Query 007255
Match_columns 611
No_of_seqs 476 out of 3737
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 21:05:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 2.7E-99 6E-104 767.8 49.4 527 17-551 188-787 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 6.9E-93 1.5E-97 733.0 45.7 509 19-551 184-692 (693)
3 TIGR01243 CDC48 AAA family ATP 100.0 2.2E-75 4.7E-80 658.4 53.7 527 16-552 175-729 (733)
4 KOG0736 Peroxisome assembly fa 100.0 4.1E-73 8.9E-78 590.6 43.5 520 18-552 400-951 (953)
5 KOG0735 AAA+-type ATPase [Post 100.0 3.9E-66 8.5E-71 533.4 38.7 452 52-517 430-891 (952)
6 COG0464 SpoVK ATPases of the A 100.0 1.8E-59 3.8E-64 509.1 45.9 487 38-548 3-492 (494)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.8E-56 3.9E-61 432.2 25.0 253 281-535 142-394 (406)
8 KOG0738 AAA+-type ATPase [Post 100.0 4.6E-51 9.9E-56 396.5 21.9 270 278-552 200-488 (491)
9 CHL00195 ycf46 Ycf46; Provisio 100.0 1.8E-45 4E-50 388.7 40.7 395 116-552 81-484 (489)
10 KOG0734 AAA+-type ATPase conta 100.0 4.7E-46 1E-50 373.7 20.5 260 285-550 299-564 (752)
11 KOG0728 26S proteasome regulat 100.0 2.3E-45 5E-50 336.8 20.8 257 281-539 138-394 (404)
12 KOG0739 AAA+-type ATPase [Post 100.0 3E-46 6.5E-51 350.7 15.1 271 276-552 119-435 (439)
13 COG1222 RPT1 ATP-dependent 26S 100.0 1.3E-44 2.8E-49 350.1 23.2 255 4-274 139-394 (406)
14 KOG0727 26S proteasome regulat 100.0 1.3E-44 2.8E-49 332.2 20.9 250 282-533 147-396 (408)
15 KOG0733 Nuclear AAA ATPase (VC 100.0 1.4E-44 3E-49 368.8 21.2 231 283-517 183-417 (802)
16 KOG0652 26S proteasome regulat 100.0 3.1E-44 6.8E-49 331.2 18.4 249 284-534 165-413 (424)
17 KOG0726 26S proteasome regulat 100.0 2.1E-44 4.6E-49 337.2 15.6 249 283-533 178-426 (440)
18 KOG0729 26S proteasome regulat 100.0 5.4E-44 1.2E-48 330.5 17.8 260 272-533 159-418 (435)
19 KOG0741 AAA+-type ATPase [Post 100.0 3.9E-43 8.5E-48 352.4 25.2 431 20-471 222-683 (744)
20 KOG0731 AAA+-type ATPase conta 100.0 6.9E-42 1.5E-46 365.9 23.5 247 284-533 305-553 (774)
21 PTZ00454 26S protease regulato 100.0 3.5E-41 7.6E-46 349.3 25.2 251 283-535 138-388 (398)
22 KOG0730 AAA+-type ATPase [Post 100.0 2.4E-41 5.1E-46 350.7 23.0 257 4-277 422-679 (693)
23 COG1223 Predicted ATPase (AAA+ 100.0 5.3E-41 1.2E-45 309.9 18.2 241 284-534 115-356 (368)
24 KOG0737 AAA+-type ATPase [Post 100.0 8.6E-41 1.9E-45 325.8 20.4 230 285-519 87-319 (386)
25 PRK03992 proteasome-activating 100.0 1.2E-39 2.5E-44 340.5 25.2 255 282-538 123-377 (389)
26 COG0465 HflB ATP-dependent Zn 100.0 2.8E-40 6E-45 348.4 19.9 247 284-533 144-390 (596)
27 PTZ00361 26 proteosome regulat 100.0 3.9E-39 8.4E-44 335.6 23.0 249 283-533 176-424 (438)
28 KOG0740 AAA+-type ATPase [Post 100.0 1.6E-39 3.5E-44 329.2 17.3 265 281-551 144-422 (428)
29 KOG0738 AAA+-type ATPase [Post 100.0 3.3E-38 7.1E-43 307.1 21.4 263 5-277 201-474 (491)
30 KOG0741 AAA+-type ATPase [Post 100.0 1.3E-38 2.8E-43 319.9 15.1 262 284-546 213-505 (744)
31 TIGR01241 FtsH_fam ATP-depende 100.0 2.7E-37 5.8E-42 334.1 24.5 250 282-534 47-296 (495)
32 KOG0651 26S proteasome regulat 100.0 2.1E-38 4.5E-43 300.2 12.7 247 285-533 127-373 (388)
33 KOG0736 Peroxisome assembly fa 100.0 7.5E-37 1.6E-41 319.9 22.8 259 9-277 665-937 (953)
34 TIGR01242 26Sp45 26S proteasom 100.0 3.4E-36 7.3E-41 313.7 24.8 249 283-533 115-363 (364)
35 TIGR03689 pup_AAA proteasome A 100.0 4.6E-36 9.9E-41 316.3 23.6 249 282-532 174-477 (512)
36 KOG0734 AAA+-type ATPase conta 100.0 3.8E-36 8.2E-41 302.5 21.1 244 16-276 301-545 (752)
37 CHL00176 ftsH cell division pr 100.0 9.1E-36 2E-40 324.7 24.2 246 285-533 178-423 (638)
38 KOG0652 26S proteasome regulat 100.0 3.6E-35 7.8E-40 271.3 17.8 252 5-272 160-412 (424)
39 TIGR02639 ClpA ATP-dependent C 100.0 2.4E-33 5.1E-38 315.8 33.7 440 16-514 179-714 (731)
40 KOG0727 26S proteasome regulat 100.0 2.3E-34 5E-39 264.7 18.9 238 18-271 154-395 (408)
41 KOG0739 AAA+-type ATPase [Post 100.0 3.4E-35 7.3E-40 276.3 13.6 234 4-250 121-356 (439)
42 KOG0732 AAA+-type ATPase conta 100.0 1.5E-34 3.3E-39 317.1 19.5 249 285-536 260-528 (1080)
43 PRK10733 hflB ATP-dependent me 100.0 7.2E-34 1.6E-38 314.0 24.7 247 285-534 147-393 (644)
44 KOG0726 26S proteasome regulat 100.0 2.7E-34 5.8E-39 269.4 15.3 244 16-272 182-426 (440)
45 KOG0728 26S proteasome regulat 100.0 1.5E-33 3.3E-38 259.1 19.9 238 19-272 147-388 (404)
46 PTZ00454 26S protease regulato 100.0 3.2E-33 7E-38 289.9 24.9 249 6-273 135-387 (398)
47 PRK11034 clpA ATP-dependent Cl 100.0 4.1E-32 8.8E-37 300.9 35.3 404 17-475 184-667 (758)
48 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.1E-33 2.4E-38 322.2 21.8 210 313-533 1619-1877(2281)
49 KOG0732 AAA+-type ATPase conta 100.0 5.9E-33 1.3E-37 304.7 25.5 385 7-399 253-669 (1080)
50 COG1223 Predicted ATPase (AAA+ 100.0 5E-33 1.1E-37 257.2 19.2 237 16-274 118-357 (368)
51 KOG0737 AAA+-type ATPase [Post 100.0 3.9E-33 8.6E-38 272.3 18.2 227 16-250 89-317 (386)
52 KOG0731 AAA+-type ATPase conta 100.0 6.2E-33 1.3E-37 297.3 21.5 240 16-272 308-553 (774)
53 PRK03992 proteasome-activating 100.0 3.6E-32 7.9E-37 284.1 25.3 255 5-278 120-378 (389)
54 KOG0729 26S proteasome regulat 100.0 5E-33 1.1E-37 257.8 16.5 251 6-272 167-418 (435)
55 KOG0735 AAA+-type ATPase [Post 100.0 1.4E-32 3.1E-37 285.2 21.6 231 8-249 659-890 (952)
56 TIGR01243 CDC48 AAA family ATP 100.0 2.7E-32 5.8E-37 308.4 25.3 251 284-537 172-439 (733)
57 PLN00020 ribulose bisphosphate 100.0 1.8E-32 4E-37 270.5 19.8 170 319-494 143-330 (413)
58 CHL00195 ycf46 Ycf46; Provisio 100.0 1.6E-31 3.4E-36 282.8 25.0 239 16-276 225-467 (489)
59 PTZ00361 26 proteosome regulat 100.0 1.2E-31 2.7E-36 279.4 23.0 247 7-272 174-424 (438)
60 COG0464 SpoVK ATPases of the A 100.0 4.3E-31 9.3E-36 287.0 25.2 254 6-277 232-488 (494)
61 TIGR03345 VI_ClpV1 type VI sec 100.0 1.5E-29 3.2E-34 286.3 36.6 437 16-513 184-832 (852)
62 COG0465 HflB ATP-dependent Zn 100.0 2.4E-31 5.3E-36 280.8 20.4 244 13-273 144-391 (596)
63 CHL00095 clpC Clp protease ATP 100.0 2.9E-29 6.4E-34 285.7 33.6 442 17-510 177-780 (821)
64 TIGR01241 FtsH_fam ATP-depende 100.0 7.7E-30 1.7E-34 276.1 23.1 242 16-274 52-297 (495)
65 TIGR03689 pup_AAA proteasome A 100.0 2.5E-29 5.3E-34 265.4 24.0 223 8-243 174-409 (512)
66 TIGR01242 26Sp45 26S proteasom 100.0 2.4E-29 5.3E-34 262.2 23.5 247 6-271 112-362 (364)
67 KOG0651 26S proteasome regulat 100.0 2.7E-30 5.8E-35 245.2 12.4 242 17-271 130-372 (388)
68 TIGR03346 chaperone_ClpB ATP-d 100.0 9.4E-28 2E-32 274.0 35.3 439 16-514 170-828 (852)
69 COG0542 clpA ATP-binding subun 100.0 1.9E-28 4E-33 265.3 27.6 406 16-476 167-707 (786)
70 CHL00176 ftsH cell division pr 100.0 4.4E-29 9.6E-34 272.4 22.0 240 16-272 180-423 (638)
71 PRK10865 protein disaggregatio 100.0 3E-27 6.4E-32 268.6 36.4 445 16-511 175-828 (857)
72 KOG0740 AAA+-type ATPase [Post 100.0 5.9E-28 1.3E-32 245.2 17.5 256 11-278 148-410 (428)
73 PLN00020 ribulose bisphosphate 100.0 7.6E-27 1.6E-31 230.8 23.8 207 16-227 112-330 (413)
74 PRK10733 hflB ATP-dependent me 100.0 5.3E-27 1.2E-31 259.4 23.6 246 12-274 145-394 (644)
75 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.9E-27 6.2E-32 270.2 20.3 214 44-275 1621-1880(2281)
76 KOG0743 AAA+-type ATPase [Post 99.9 1.6E-23 3.4E-28 210.9 16.8 211 282-503 194-412 (457)
77 KOG0742 AAA+-type ATPase [Post 99.9 7.8E-22 1.7E-26 193.7 17.2 232 285-530 350-609 (630)
78 CHL00181 cbbX CbbX; Provisiona 99.9 1.3E-21 2.9E-26 195.5 19.1 215 290-517 23-260 (287)
79 TIGR02881 spore_V_K stage V sp 99.9 2.6E-21 5.7E-26 192.4 19.4 224 288-525 4-252 (261)
80 TIGR02881 spore_V_K stage V sp 99.9 4.4E-21 9.5E-26 190.8 19.3 217 15-249 2-243 (261)
81 CHL00181 cbbX CbbX; Provisiona 99.9 9E-21 1.9E-25 189.5 20.4 215 19-250 23-260 (287)
82 KOG0744 AAA+-type ATPase [Post 99.9 5E-22 1.1E-26 190.0 10.5 238 288-531 140-412 (423)
83 PF00004 AAA: ATPase family as 99.9 1.4E-21 3E-26 173.8 12.9 130 327-460 1-132 (132)
84 TIGR02880 cbbX_cfxQ probable R 99.9 8.4E-21 1.8E-25 190.0 18.5 213 291-516 23-258 (284)
85 TIGR02639 ClpA ATP-dependent C 99.9 4E-21 8.6E-26 216.9 18.0 168 286-478 178-362 (731)
86 TIGR02880 cbbX_cfxQ probable R 99.9 1.6E-20 3.5E-25 188.0 20.0 218 16-250 18-259 (284)
87 PF05496 RuvB_N: Holliday junc 99.9 9E-21 1.9E-25 176.5 14.6 193 283-508 17-226 (233)
88 COG0542 clpA ATP-binding subun 99.8 7E-20 1.5E-24 199.0 17.9 215 286-535 166-397 (786)
89 PRK11034 clpA ATP-dependent Cl 99.8 3.7E-20 8E-25 206.0 16.0 221 288-533 184-433 (758)
90 PF05496 RuvB_N: Holliday junc 99.8 1.7E-19 3.7E-24 167.9 15.6 184 13-228 18-214 (233)
91 COG2255 RuvB Holliday junction 99.8 1.2E-18 2.6E-23 164.8 18.3 217 283-534 19-252 (332)
92 TIGR03345 VI_ClpV1 type VI sec 99.8 3.5E-19 7.5E-24 202.2 17.6 183 286-494 183-388 (852)
93 PRK10865 protein disaggregatio 99.8 4.5E-19 9.8E-24 202.0 18.1 173 286-484 174-364 (857)
94 KOG0743 AAA+-type ATPase [Post 99.8 1.7E-18 3.6E-23 174.9 18.1 181 16-210 198-386 (457)
95 PF00004 AAA: ATPase family as 99.8 1.4E-18 2.9E-23 154.5 15.0 131 56-193 1-132 (132)
96 PRK14956 DNA polymerase III su 99.8 4.1E-18 8.9E-23 177.7 20.7 188 283-508 11-227 (484)
97 COG2256 MGS1 ATPase related to 99.8 2.7E-18 5.8E-23 170.3 17.9 224 283-552 17-260 (436)
98 PRK12323 DNA polymerase III su 99.8 8.6E-19 1.9E-23 186.7 14.5 189 283-509 9-231 (700)
99 PRK07003 DNA polymerase III su 99.8 5.5E-18 1.2E-22 182.8 19.6 190 283-510 9-227 (830)
100 TIGR03346 chaperone_ClpB ATP-d 99.8 3.3E-18 7.1E-23 195.9 18.0 209 286-530 169-395 (852)
101 CHL00095 clpC Clp protease ATP 99.8 3.2E-18 6.9E-23 195.5 17.8 197 287-509 176-399 (821)
102 PRK00080 ruvB Holliday junctio 99.8 2.3E-17 5E-22 169.8 22.1 233 284-551 19-271 (328)
103 KOG0742 AAA+-type ATPase [Post 99.8 8.4E-18 1.8E-22 165.6 16.9 210 17-242 353-590 (630)
104 TIGR00635 ruvB Holliday juncti 99.8 1.8E-17 3.8E-22 169.5 18.5 212 288-534 2-230 (305)
105 KOG0744 AAA+-type ATPase [Post 99.8 5.4E-18 1.2E-22 162.6 13.2 181 21-208 144-341 (423)
106 KOG0989 Replication factor C, 99.8 3.3E-17 7.3E-22 156.8 18.2 195 279-509 25-236 (346)
107 PRK14960 DNA polymerase III su 99.8 2E-17 4.3E-22 176.8 18.2 190 283-510 8-226 (702)
108 COG2255 RuvB Holliday junction 99.7 3.5E-17 7.5E-22 155.0 16.4 183 14-228 21-216 (332)
109 PRK14949 DNA polymerase III su 99.7 4.5E-17 9.8E-22 179.1 19.5 188 283-508 9-225 (944)
110 PRK14962 DNA polymerase III su 99.7 4.5E-17 9.8E-22 173.0 18.6 204 284-531 8-240 (472)
111 COG2256 MGS1 ATPase related to 99.7 5.1E-17 1.1E-21 161.3 16.8 177 14-231 19-208 (436)
112 TIGR00763 lon ATP-dependent pr 99.7 3.8E-17 8.2E-22 185.6 18.3 164 290-474 320-505 (775)
113 PRK07994 DNA polymerase III su 99.7 6.7E-17 1.4E-21 175.6 19.0 187 284-508 10-225 (647)
114 PRK14958 DNA polymerase III su 99.7 2.2E-17 4.8E-22 177.3 15.2 190 283-510 9-227 (509)
115 KOG2004 Mitochondrial ATP-depe 99.7 3.8E-17 8.2E-22 171.5 15.5 164 290-474 411-596 (906)
116 PRK14964 DNA polymerase III su 99.7 5.4E-17 1.2E-21 171.4 16.5 204 283-530 6-238 (491)
117 PRK14961 DNA polymerase III su 99.7 1E-16 2.2E-21 166.8 17.9 204 283-530 9-241 (363)
118 TIGR00635 ruvB Holliday juncti 99.7 5E-16 1.1E-20 158.8 21.2 193 17-242 2-207 (305)
119 PRK06645 DNA polymerase III su 99.7 3.1E-16 6.7E-21 167.2 20.1 199 281-511 12-237 (507)
120 PRK00080 ruvB Holliday junctio 99.7 6.9E-16 1.5E-20 158.9 21.7 197 15-244 21-230 (328)
121 PRK14951 DNA polymerase III su 99.7 3.6E-16 7.9E-21 169.7 18.3 190 283-510 9-232 (618)
122 PRK08691 DNA polymerase III su 99.7 2.3E-16 5E-21 170.4 16.5 190 283-510 9-227 (709)
123 KOG1051 Chaperone HSP104 and r 99.7 4.7E-15 1E-19 163.8 26.7 163 18-209 185-365 (898)
124 PRK14956 DNA polymerase III su 99.7 7.1E-16 1.5E-20 161.0 19.2 189 15-241 14-227 (484)
125 PRK07940 DNA polymerase III su 99.7 2.8E-16 6.1E-21 163.2 15.8 185 288-503 3-214 (394)
126 PRK14959 DNA polymerase III su 99.7 4.3E-16 9.4E-21 167.7 17.6 204 283-530 9-241 (624)
127 PRK14957 DNA polymerase III su 99.7 5.1E-16 1.1E-20 166.5 17.9 204 283-530 9-241 (546)
128 PRK14952 DNA polymerase III su 99.7 4.6E-16 9.9E-21 168.4 17.6 189 284-510 7-226 (584)
129 PRK07003 DNA polymerase III su 99.7 1.3E-15 2.8E-20 164.6 20.0 190 14-241 11-225 (830)
130 PRK14963 DNA polymerase III su 99.7 8.6E-16 1.9E-20 164.6 18.5 187 284-508 8-222 (504)
131 PRK05563 DNA polymerase III su 99.7 6E-16 1.3E-20 168.5 17.4 189 284-510 10-227 (559)
132 PRK12323 DNA polymerase III su 99.7 7.9E-16 1.7E-20 164.3 17.6 189 15-241 12-230 (700)
133 PRK07764 DNA polymerase III su 99.7 6.1E-16 1.3E-20 173.6 17.4 188 283-508 8-226 (824)
134 PRK14969 DNA polymerase III su 99.7 5.7E-16 1.2E-20 167.5 16.6 190 283-510 9-227 (527)
135 COG0466 Lon ATP-dependent Lon 99.7 1.3E-15 2.9E-20 161.1 18.7 164 290-474 323-508 (782)
136 PRK05896 DNA polymerase III su 99.7 6.5E-16 1.4E-20 165.5 16.6 189 283-509 9-226 (605)
137 PRK07133 DNA polymerase III su 99.7 8E-16 1.7E-20 168.0 17.5 194 283-509 11-225 (725)
138 COG2812 DnaX DNA polymerase II 99.7 2.8E-16 6E-21 165.3 12.9 196 283-510 9-227 (515)
139 PRK00149 dnaA chromosomal repl 99.7 2.5E-15 5.5E-20 161.2 20.5 229 285-544 117-364 (450)
140 PRK14965 DNA polymerase III su 99.7 5E-16 1.1E-20 170.0 15.3 204 283-530 9-241 (576)
141 PLN03025 replication factor C 99.7 3.5E-15 7.6E-20 152.9 20.0 184 283-505 6-202 (319)
142 PRK13342 recombination factor 99.7 3.1E-15 6.7E-20 158.6 19.7 201 284-533 6-219 (413)
143 TIGR02902 spore_lonB ATP-depen 99.7 1.7E-15 3.6E-20 164.5 17.6 218 280-531 55-330 (531)
144 TIGR00763 lon ATP-dependent pr 99.7 1.8E-15 3.9E-20 172.1 18.5 168 19-207 320-505 (775)
145 TIGR00362 DnaA chromosomal rep 99.7 3.9E-15 8.4E-20 157.9 19.8 203 324-546 136-354 (405)
146 PRK14962 DNA polymerase III su 99.7 4.5E-15 9.7E-20 157.9 19.6 178 14-228 9-211 (472)
147 PRK14960 DNA polymerase III su 99.7 4.7E-15 1E-19 158.8 19.5 190 14-241 10-224 (702)
148 PRK08451 DNA polymerase III su 99.7 3.2E-15 7E-20 159.4 17.8 191 283-511 7-226 (535)
149 PRK14953 DNA polymerase III su 99.6 2.5E-15 5.5E-20 160.5 16.9 196 283-510 9-227 (486)
150 PF05673 DUF815: Protein of un 99.6 1.7E-14 3.7E-19 136.6 20.4 206 3-240 11-245 (249)
151 PRK06305 DNA polymerase III su 99.6 4.2E-15 9E-20 158.0 17.9 203 284-530 11-243 (451)
152 PRK14949 DNA polymerase III su 99.6 7.6E-15 1.7E-19 161.7 20.2 194 16-241 13-225 (944)
153 PRK07940 DNA polymerase III su 99.6 7.9E-15 1.7E-19 152.4 19.2 190 17-237 3-215 (394)
154 PRK06647 DNA polymerase III su 99.6 3.4E-15 7.4E-20 161.9 17.0 194 283-509 9-226 (563)
155 COG0466 Lon ATP-dependent Lon 99.6 1.3E-14 2.8E-19 153.7 20.3 167 20-207 324-508 (782)
156 PRK07994 DNA polymerase III su 99.6 9E-15 2E-19 159.1 19.6 188 16-241 13-225 (647)
157 TIGR02397 dnaX_nterm DNA polym 99.6 3.6E-15 7.8E-20 156.0 15.7 204 283-530 7-239 (355)
158 PRK14958 DNA polymerase III su 99.6 8.5E-15 1.9E-19 157.4 18.9 189 15-241 12-225 (509)
159 PRK04195 replication factor C 99.6 7.7E-15 1.7E-19 158.6 18.5 191 283-509 7-205 (482)
160 KOG0989 Replication factor C, 99.6 5.4E-15 1.2E-19 141.8 14.9 178 16-228 33-223 (346)
161 PRK14961 DNA polymerase III su 99.6 1.8E-14 3.8E-19 150.0 20.1 194 16-241 13-225 (363)
162 PRK14948 DNA polymerase III su 99.6 8.9E-15 1.9E-19 160.5 18.1 192 283-506 9-225 (620)
163 PRK14088 dnaA chromosomal repl 99.6 2.4E-14 5.2E-19 152.1 20.8 191 324-533 130-332 (440)
164 PRK05342 clpX ATP-dependent pr 99.6 1.4E-14 3.1E-19 151.2 18.6 222 292-515 73-382 (412)
165 PRK09111 DNA polymerase III su 99.6 6.7E-15 1.4E-19 160.3 16.8 196 282-509 16-239 (598)
166 PRK14964 DNA polymerase III su 99.6 1.9E-14 4E-19 152.3 19.6 190 15-242 9-223 (491)
167 PRK06645 DNA polymerase III su 99.6 2.5E-14 5.3E-19 152.7 20.6 196 15-242 17-235 (507)
168 KOG2004 Mitochondrial ATP-depe 99.6 4.6E-15 1E-19 156.0 14.4 169 19-208 411-597 (906)
169 PRK14955 DNA polymerase III su 99.6 8.1E-15 1.8E-19 154.3 16.5 195 283-510 9-235 (397)
170 TIGR02902 spore_lonB ATP-depen 99.6 1.4E-14 2.9E-19 157.4 18.5 219 16-270 62-330 (531)
171 PRK14954 DNA polymerase III su 99.6 1.8E-14 3.8E-19 157.2 18.8 196 283-511 9-236 (620)
172 PRK13341 recombination factor 99.6 2.8E-14 6.2E-19 158.5 20.8 227 283-551 21-271 (725)
173 PHA02544 44 clamp loader, smal 99.6 3.1E-14 6.8E-19 146.3 19.3 160 281-473 12-172 (316)
174 PRK05342 clpX ATP-dependent pr 99.6 6.5E-14 1.4E-18 146.2 21.6 232 16-249 67-383 (412)
175 KOG2028 ATPase related to the 99.6 1.6E-14 3.4E-19 140.9 15.6 227 284-552 132-390 (554)
176 PRK12402 replication factor C 99.6 3.1E-14 6.7E-19 147.9 19.0 211 282-532 7-248 (337)
177 PRK08691 DNA polymerase III su 99.6 3E-14 6.4E-19 154.2 18.3 196 15-242 12-226 (709)
178 PLN03025 replication factor C 99.6 2.5E-14 5.3E-19 146.7 16.8 176 14-227 8-192 (319)
179 PRK14970 DNA polymerase III su 99.6 2.5E-14 5.3E-19 150.0 17.1 196 283-510 10-216 (367)
180 PRK06893 DNA replication initi 99.6 5.2E-14 1.1E-18 137.0 18.1 180 325-530 40-227 (229)
181 PRK13342 recombination factor 99.6 4.2E-14 9E-19 150.0 18.7 184 15-240 8-200 (413)
182 PRK14957 DNA polymerase III su 99.6 6.3E-14 1.4E-18 150.5 20.0 189 15-241 12-225 (546)
183 PF05673 DUF815: Protein of un 99.6 8.4E-14 1.8E-18 131.9 18.2 188 285-505 22-243 (249)
184 TIGR00382 clpX endopeptidase C 99.6 5.2E-14 1.1E-18 146.0 18.1 223 291-515 78-388 (413)
185 PRK14950 DNA polymerase III su 99.6 2.5E-14 5.4E-19 157.5 16.7 210 283-530 9-242 (585)
186 PRK14951 DNA polymerase III su 99.6 6.2E-14 1.3E-18 152.4 19.4 188 16-241 13-230 (618)
187 TIGR00390 hslU ATP-dependent p 99.6 3.1E-14 6.8E-19 145.1 15.9 177 291-471 13-343 (441)
188 PRK14952 DNA polymerase III su 99.6 8.6E-14 1.9E-18 150.8 20.3 188 16-241 10-224 (584)
189 PRK05563 DNA polymerase III su 99.6 8E-14 1.7E-18 152.0 20.1 189 15-241 12-225 (559)
190 PRK12422 chromosomal replicati 99.6 4.4E-14 9.5E-19 149.6 17.2 206 324-545 141-360 (445)
191 PRK14086 dnaA chromosomal repl 99.6 1.2E-13 2.7E-18 148.2 20.3 202 325-545 315-532 (617)
192 PRK05201 hslU ATP-dependent pr 99.6 3.5E-14 7.6E-19 144.9 15.3 177 291-471 16-345 (443)
193 PRK10787 DNA-binding ATP-depen 99.6 4.8E-14 1E-18 158.7 18.0 219 291-531 323-580 (784)
194 PRK08084 DNA replication initi 99.6 1.1E-13 2.4E-18 135.1 17.9 204 286-530 18-233 (235)
195 PRK14969 DNA polymerase III su 99.6 8.1E-14 1.7E-18 150.9 18.4 189 16-242 13-226 (527)
196 PRK04195 replication factor C 99.6 1.1E-13 2.5E-18 149.5 19.3 189 16-240 11-203 (482)
197 TIGR02928 orc1/cdc6 family rep 99.6 1.3E-13 2.8E-18 144.8 19.1 222 288-534 13-275 (365)
198 PRK14963 DNA polymerase III su 99.6 1.8E-13 3.9E-18 146.9 20.3 187 16-240 11-221 (504)
199 PRK05896 DNA polymerase III su 99.6 1.9E-13 4.1E-18 146.7 19.4 187 15-239 12-223 (605)
200 PRK07133 DNA polymerase III su 99.5 2.1E-13 4.6E-18 149.2 20.0 192 16-239 15-222 (725)
201 PRK07764 DNA polymerase III su 99.5 1.9E-13 4.1E-18 153.7 20.0 193 16-240 12-225 (824)
202 PRK08903 DnaA regulatory inact 99.5 1.8E-13 3.9E-18 133.5 17.1 200 286-531 14-224 (227)
203 TIGR03420 DnaA_homol_Hda DnaA 99.5 1.6E-13 3.4E-18 134.0 16.3 203 287-530 12-225 (226)
204 PRK14965 DNA polymerase III su 99.5 2E-13 4.3E-18 149.6 18.7 187 16-240 13-224 (576)
205 PRK14971 DNA polymerase III su 99.5 1.7E-13 3.7E-18 150.5 17.9 189 284-510 11-229 (614)
206 TIGR00390 hslU ATP-dependent p 99.5 2.6E-13 5.7E-18 138.4 17.7 183 19-203 12-342 (441)
207 TIGR00382 clpX endopeptidase C 99.5 4.9E-13 1.1E-17 138.8 19.9 228 20-249 78-389 (413)
208 PRK14959 DNA polymerase III su 99.5 3E-13 6.5E-18 145.9 18.9 178 16-230 13-215 (624)
209 PRK14087 dnaA chromosomal repl 99.5 4.7E-13 1E-17 142.4 20.1 205 324-546 141-365 (450)
210 KOG2028 ATPase related to the 99.5 1.4E-13 3E-18 134.4 14.5 215 14-271 133-367 (554)
211 PRK08451 DNA polymerase III su 99.5 5.7E-13 1.2E-17 142.3 20.6 191 15-243 10-225 (535)
212 PRK05201 hslU ATP-dependent pr 99.5 2.2E-13 4.9E-18 139.0 16.5 184 19-204 15-345 (443)
213 TIGR02397 dnaX_nterm DNA polym 99.5 4.9E-13 1.1E-17 139.8 19.8 186 16-239 11-221 (355)
214 COG2607 Predicted ATPase (AAA+ 99.5 1.3E-12 2.7E-17 121.3 19.4 206 4-241 45-278 (287)
215 PRK14953 DNA polymerase III su 99.5 6.2E-13 1.3E-17 142.3 20.0 194 16-241 13-225 (486)
216 PRK00440 rfc replication facto 99.5 4.9E-13 1.1E-17 137.7 18.7 203 283-531 10-224 (319)
217 TIGR02903 spore_lon_C ATP-depe 99.5 1.4E-12 3E-17 144.0 23.1 220 281-532 145-429 (615)
218 PRK06647 DNA polymerase III su 99.5 5.5E-13 1.2E-17 144.8 19.2 195 15-241 12-225 (563)
219 PRK07471 DNA polymerase III su 99.5 8.1E-13 1.8E-17 136.4 19.5 186 285-505 14-240 (365)
220 PRK08727 hypothetical protein; 99.5 7.9E-13 1.7E-17 128.9 18.4 179 325-531 42-229 (233)
221 PRK09111 DNA polymerase III su 99.5 7.5E-13 1.6E-17 144.4 20.0 196 14-241 19-238 (598)
222 PRK10787 DNA-binding ATP-depen 99.5 6.6E-13 1.4E-17 149.6 20.1 206 20-247 323-558 (784)
223 PRK00411 cdc6 cell division co 99.5 9.4E-13 2E-17 139.7 20.2 223 288-534 28-283 (394)
224 PRK09112 DNA polymerase III su 99.5 9.5E-13 2.1E-17 135.1 19.4 191 285-508 18-245 (351)
225 TIGR02928 orc1/cdc6 family rep 99.5 1.5E-12 3.4E-17 136.6 21.5 221 19-272 15-274 (365)
226 PRK05564 DNA polymerase III su 99.5 9.1E-13 2E-17 134.8 19.1 174 287-494 1-182 (313)
227 PRK07399 DNA polymerase III su 99.5 8.9E-13 1.9E-17 133.5 18.6 184 288-506 2-224 (314)
228 PHA02544 44 clamp loader, smal 99.5 5.7E-13 1.2E-17 136.9 17.2 155 16-206 18-172 (316)
229 PRK14970 DNA polymerase III su 99.5 1.1E-12 2.3E-17 137.6 19.4 181 16-227 14-201 (367)
230 COG2812 DnaX DNA polymerase II 99.5 1.8E-13 3.8E-18 144.3 13.4 198 14-243 11-227 (515)
231 PTZ00112 origin recognition co 99.5 6.6E-13 1.4E-17 144.3 17.9 217 289-533 754-1006(1164)
232 PF00308 Bac_DnaA: Bacterial d 99.5 2.8E-13 6.2E-18 130.5 13.7 199 285-511 3-216 (219)
233 COG0593 DnaA ATPase involved i 99.5 1.5E-12 3.3E-17 133.4 19.2 205 323-547 112-330 (408)
234 PRK06620 hypothetical protein; 99.5 1.3E-12 2.8E-17 125.3 17.5 194 285-530 11-213 (214)
235 PRK14955 DNA polymerase III su 99.5 9.9E-13 2.1E-17 138.5 18.0 194 14-239 11-231 (397)
236 PRK05642 DNA replication initi 99.5 7.7E-13 1.7E-17 129.0 15.8 179 324-530 45-232 (234)
237 PRK14948 DNA polymerase III su 99.5 1.7E-12 3.8E-17 142.5 20.3 191 16-238 13-224 (620)
238 PRK06305 DNA polymerase III su 99.5 1.9E-12 4.1E-17 137.8 19.9 175 16-227 14-214 (451)
239 PRK12402 replication factor C 99.5 1.8E-12 4E-17 134.5 19.2 188 16-239 12-226 (337)
240 TIGR02903 spore_lon_C ATP-depe 99.5 1.4E-12 3.1E-17 143.8 19.0 228 15-270 150-428 (615)
241 KOG0991 Replication factor C, 99.5 3.6E-13 7.7E-18 123.9 11.7 186 16-236 24-215 (333)
242 PRK13341 recombination factor 99.5 1.3E-12 2.8E-17 145.4 18.2 184 16-241 25-222 (725)
243 PRK00411 cdc6 cell division co 99.5 7.1E-12 1.5E-16 133.0 23.1 224 19-272 30-282 (394)
244 PRK00149 dnaA chromosomal repl 99.5 3.8E-12 8.3E-17 136.7 20.9 171 53-243 148-329 (450)
245 PTZ00112 origin recognition co 99.5 5.2E-12 1.1E-16 137.4 21.3 181 19-224 755-967 (1164)
246 PRK14954 DNA polymerase III su 99.5 4.4E-12 9.5E-17 138.6 20.5 183 15-228 12-221 (620)
247 TIGR02640 gas_vesic_GvpN gas v 99.4 4.4E-12 9.5E-17 126.0 16.6 132 325-474 22-198 (262)
248 PRK05707 DNA polymerase III su 99.4 4.1E-12 9E-17 129.3 16.7 157 322-504 20-204 (328)
249 PRK14950 DNA polymerase III su 99.4 7.7E-12 1.7E-16 137.9 20.0 192 16-239 13-224 (585)
250 COG5271 MDN1 AAA ATPase contai 99.4 4.3E-12 9.2E-17 142.3 17.4 140 52-209 887-1049(4600)
251 PRK08084 DNA replication initi 99.4 1.1E-11 2.4E-16 121.1 18.6 182 17-239 20-212 (235)
252 TIGR02640 gas_vesic_GvpN gas v 99.4 2.9E-12 6.3E-17 127.3 14.6 142 53-207 21-198 (262)
253 PRK14971 DNA polymerase III su 99.4 8.9E-12 1.9E-16 137.0 19.4 188 14-239 12-225 (614)
254 PRK06893 DNA replication initi 99.4 5.7E-12 1.2E-16 122.7 16.0 160 54-239 40-206 (229)
255 PRK00440 rfc replication facto 99.4 1.1E-11 2.3E-16 127.8 18.9 175 16-228 14-196 (319)
256 TIGR01650 PD_CobS cobaltochela 99.4 1.4E-12 3.1E-17 130.1 10.9 141 52-209 63-235 (327)
257 PRK09112 DNA polymerase III su 99.4 1.8E-11 4E-16 125.7 19.4 186 15-232 19-237 (351)
258 PRK08058 DNA polymerase III su 99.4 2E-12 4.3E-17 132.6 12.2 153 288-471 3-179 (329)
259 COG1224 TIP49 DNA helicase TIP 99.4 2.9E-11 6.3E-16 118.3 19.1 126 384-531 292-430 (450)
260 COG1474 CDC6 Cdc6-related prot 99.4 3.3E-11 7.2E-16 124.2 20.5 213 20-268 18-261 (366)
261 TIGR03420 DnaA_homol_Hda DnaA 99.4 1.4E-11 3.1E-16 120.2 17.1 181 22-244 20-209 (226)
262 PRK07471 DNA polymerase III su 99.4 2.3E-11 5E-16 125.6 19.3 184 14-231 14-234 (365)
263 PRK14086 dnaA chromosomal repl 99.4 1.9E-11 4E-16 131.6 18.9 168 54-241 315-493 (617)
264 COG2607 Predicted ATPase (AAA+ 99.4 3.6E-11 7.7E-16 111.7 17.9 192 283-505 53-275 (287)
265 TIGR00362 DnaA chromosomal rep 99.4 6.3E-12 1.4E-16 133.4 15.0 171 53-244 136-318 (405)
266 CHL00081 chlI Mg-protoporyphyr 99.4 1.9E-11 4.1E-16 124.2 17.7 166 16-207 14-232 (350)
267 KOG0991 Replication factor C, 99.4 4.4E-12 9.5E-17 116.9 11.6 188 283-508 20-216 (333)
268 PRK05564 DNA polymerase III su 99.4 2.8E-11 6E-16 123.9 18.7 177 17-231 2-186 (313)
269 PRK13407 bchI magnesium chelat 99.4 6.3E-12 1.4E-16 127.6 13.8 161 285-474 3-216 (334)
270 KOG1969 DNA replication checkp 99.4 3.2E-11 6.9E-16 127.9 18.8 211 16-247 268-518 (877)
271 PRK13407 bchI magnesium chelat 99.4 4.7E-12 1E-16 128.5 11.7 167 16-207 5-216 (334)
272 TIGR00678 holB DNA polymerase 99.3 1E-11 2.2E-16 117.5 13.1 144 322-494 12-183 (188)
273 PRK09087 hypothetical protein; 99.3 1.2E-11 2.5E-16 119.7 13.6 170 326-532 46-221 (226)
274 PRK07399 DNA polymerase III su 99.3 4E-11 8.6E-16 121.5 18.1 184 17-234 2-220 (314)
275 PRK08727 hypothetical protein; 99.3 7.8E-11 1.7E-15 114.9 19.3 147 53-227 41-196 (233)
276 PF00308 Bac_DnaA: Bacterial d 99.3 1.5E-11 3.2E-16 118.6 13.7 167 53-240 34-212 (219)
277 COG1219 ClpX ATP-dependent pro 99.3 1.4E-11 3.1E-16 118.7 13.2 130 292-424 63-203 (408)
278 PRK06871 DNA polymerase III su 99.3 5E-11 1.1E-15 120.4 17.9 155 322-504 22-204 (325)
279 cd00009 AAA The AAA+ (ATPases 99.3 1.4E-11 3E-16 111.1 12.5 137 294-459 2-150 (151)
280 TIGR02030 BchI-ChlI magnesium 99.3 2.5E-11 5.4E-16 123.5 15.8 165 17-206 2-218 (337)
281 PRK07993 DNA polymerase III su 99.3 3.6E-11 7.8E-16 122.8 16.9 157 321-504 21-205 (334)
282 PHA02244 ATPase-like protein 99.3 3.8E-11 8.3E-16 121.1 16.3 130 52-199 118-266 (383)
283 COG1474 CDC6 Cdc6-related prot 99.3 1.3E-10 2.8E-15 119.9 20.2 216 290-532 17-264 (366)
284 COG0470 HolB ATPase involved i 99.3 1.2E-11 2.6E-16 127.8 12.5 149 291-471 2-178 (325)
285 TIGR00678 holB DNA polymerase 99.3 9.4E-11 2E-15 110.8 17.5 148 52-228 13-184 (188)
286 cd00009 AAA The AAA+ (ATPases 99.3 3.7E-11 8E-16 108.2 14.1 144 23-192 2-150 (151)
287 PRK12422 chromosomal replicati 99.3 2.3E-11 5.1E-16 128.9 14.6 168 53-240 141-317 (445)
288 PRK08903 DnaA regulatory inact 99.3 1.1E-10 2.4E-15 113.9 18.3 178 17-240 16-203 (227)
289 PRK04132 replication factor C 99.3 4.6E-11 1E-15 133.6 17.5 157 326-508 566-736 (846)
290 PRK14088 dnaA chromosomal repl 99.3 6.1E-11 1.3E-15 126.2 17.4 169 53-241 130-310 (440)
291 KOG1969 DNA replication checkp 99.3 7.9E-11 1.7E-15 125.0 17.6 226 283-530 264-534 (877)
292 CHL00081 chlI Mg-protoporyphyr 99.3 7.2E-11 1.6E-15 120.0 16.5 159 285-473 12-231 (350)
293 COG5271 MDN1 AAA ATPase contai 99.3 5.3E-11 1.2E-15 133.8 16.1 144 52-210 1542-1706(4600)
294 PHA02244 ATPase-like protein 99.3 1.1E-10 2.4E-15 117.8 17.0 122 324-464 119-264 (383)
295 PF01078 Mg_chelatase: Magnesi 99.3 1.6E-12 3.5E-17 120.9 3.3 144 289-464 2-205 (206)
296 PRK05642 DNA replication initi 99.3 9.3E-11 2E-15 114.4 15.7 159 53-240 45-212 (234)
297 COG1219 ClpX ATP-dependent pro 99.3 3.3E-11 7.1E-16 116.2 11.1 135 19-153 61-203 (408)
298 PRK06964 DNA polymerase III su 99.3 1.6E-10 3.5E-15 117.6 16.7 156 322-504 19-226 (342)
299 COG1224 TIP49 DNA helicase TIP 99.3 5.7E-10 1.2E-14 109.4 19.4 126 117-270 292-430 (450)
300 COG1220 HslU ATP-dependent pro 99.3 7.7E-11 1.7E-15 114.5 13.3 183 20-204 16-346 (444)
301 TIGR01650 PD_CobS cobaltochela 99.3 1.9E-11 4.1E-16 122.1 9.5 137 323-476 63-235 (327)
302 PF13177 DNA_pol3_delta2: DNA 99.2 4.1E-11 8.9E-16 109.8 10.6 133 294-460 1-160 (162)
303 COG0714 MoxR-like ATPases [Gen 99.2 6.5E-11 1.4E-15 122.0 13.3 159 20-205 25-201 (329)
304 TIGR02030 BchI-ChlI magnesium 99.2 1.7E-10 3.6E-15 117.5 15.8 155 288-473 2-218 (337)
305 COG0470 HolB ATPase involved i 99.2 1.8E-10 3.9E-15 118.9 16.3 154 19-204 1-178 (325)
306 PRK14087 dnaA chromosomal repl 99.2 4E-10 8.7E-15 120.0 18.8 174 53-244 141-327 (450)
307 PRK08769 DNA polymerase III su 99.2 1.8E-10 3.8E-15 116.3 15.2 172 296-504 10-209 (319)
308 PRK05707 DNA polymerase III su 99.2 3.4E-10 7.4E-15 115.4 17.1 156 51-231 20-199 (328)
309 PF07724 AAA_2: AAA domain (Cd 99.2 2.4E-11 5.2E-16 112.0 7.6 120 52-173 2-131 (171)
310 PF07728 AAA_5: AAA domain (dy 99.2 3.6E-12 7.8E-17 114.2 1.8 119 55-185 1-139 (139)
311 PRK11331 5-methylcytosine-spec 99.2 2.3E-10 5.1E-15 118.6 15.2 151 18-197 174-362 (459)
312 PRK08058 DNA polymerase III su 99.2 3E-10 6.4E-15 116.6 16.0 151 19-205 5-180 (329)
313 PF06068 TIP49: TIP49 C-termin 99.2 2.7E-10 5.9E-15 113.7 14.5 67 288-362 22-90 (398)
314 PF13177 DNA_pol3_delta2: DNA 99.2 2.7E-10 6E-15 104.4 13.3 138 23-194 1-161 (162)
315 PRK06090 DNA polymerase III su 99.2 4.3E-10 9.2E-15 113.4 15.7 167 296-504 9-202 (319)
316 TIGR02442 Cob-chelat-sub cobal 99.2 8.8E-10 1.9E-14 122.7 19.2 163 17-206 2-213 (633)
317 PRK11331 5-methylcytosine-spec 99.2 2.5E-10 5.4E-15 118.4 13.1 140 289-459 174-356 (459)
318 TIGR02442 Cob-chelat-sub cobal 99.2 2.4E-10 5.2E-15 127.2 13.3 156 288-472 2-212 (633)
319 PRK06620 hypothetical protein; 99.2 7.8E-10 1.7E-14 106.1 15.0 143 54-239 45-192 (214)
320 PF07726 AAA_3: ATPase family 99.2 1.9E-11 4.1E-16 104.1 3.3 117 55-186 1-130 (131)
321 PF07724 AAA_2: AAA domain (Cd 99.1 1.2E-10 2.7E-15 107.3 7.9 114 323-441 2-132 (171)
322 PF01078 Mg_chelatase: Magnesi 99.1 3.4E-11 7.4E-16 112.1 4.1 127 17-171 1-158 (206)
323 PRK13531 regulatory ATPase Rav 99.1 3.1E-10 6.7E-15 118.7 11.6 160 19-206 20-193 (498)
324 COG0714 MoxR-like ATPases [Gen 99.1 3.9E-10 8.4E-15 116.2 12.3 133 324-472 43-201 (329)
325 TIGR00602 rad24 checkpoint pro 99.1 2.9E-09 6.3E-14 116.5 18.2 206 280-512 74-329 (637)
326 COG0593 DnaA ATPase involved i 99.1 1.6E-09 3.5E-14 111.3 14.9 173 52-245 112-295 (408)
327 PF07728 AAA_5: AAA domain (dy 99.1 1E-10 2.2E-15 104.8 5.3 110 326-452 1-139 (139)
328 smart00382 AAA ATPases associa 99.1 5.4E-10 1.2E-14 99.8 10.1 126 324-461 2-147 (148)
329 PRK08769 DNA polymerase III su 99.1 5.7E-09 1.2E-13 105.4 18.3 174 24-233 9-206 (319)
330 TIGR03015 pepcterm_ATPase puta 99.1 8.1E-09 1.8E-13 103.6 19.4 195 53-271 43-265 (269)
331 PRK06871 DNA polymerase III su 99.1 7.6E-09 1.6E-13 104.7 19.0 168 24-230 7-198 (325)
332 PRK04132 replication factor C 99.1 2.2E-09 4.8E-14 120.3 16.0 155 54-233 565-729 (846)
333 KOG2035 Replication factor C, 99.1 2.3E-08 4.9E-13 95.1 20.0 185 16-232 10-225 (351)
334 PF06068 TIP49: TIP49 C-termin 99.1 5.4E-09 1.2E-13 104.5 16.6 78 117-214 279-368 (398)
335 KOG1051 Chaperone HSP104 and r 99.1 1E-09 2.3E-14 121.9 12.8 147 322-481 206-370 (898)
336 COG1220 HslU ATP-dependent pro 99.0 2.5E-09 5.5E-14 104.1 13.3 83 385-471 252-346 (444)
337 PRK09087 hypothetical protein; 99.0 3.9E-09 8.4E-14 102.2 14.8 137 54-227 45-187 (226)
338 TIGR03015 pepcterm_ATPase puta 99.0 1.5E-08 3.3E-13 101.6 19.5 189 325-534 44-267 (269)
339 PRK13531 regulatory ATPase Rav 99.0 1.9E-09 4.2E-14 112.8 13.2 151 291-473 21-193 (498)
340 KOG0745 Putative ATP-dependent 99.0 1.3E-09 2.7E-14 109.5 10.5 135 325-461 227-386 (564)
341 PRK06964 DNA polymerase III su 99.0 7.5E-09 1.6E-13 105.5 15.8 137 51-206 19-203 (342)
342 TIGR00764 lon_rel lon-related 99.0 4.3E-09 9.4E-14 116.0 15.0 234 281-533 9-391 (608)
343 COG1221 PspF Transcriptional r 99.0 1.4E-09 3E-14 111.4 10.1 203 16-247 75-312 (403)
344 TIGR00602 rad24 checkpoint pro 99.0 6E-09 1.3E-13 114.0 15.6 200 16-240 81-324 (637)
345 KOG1942 DNA helicase, TBP-inte 99.0 9.6E-09 2.1E-13 98.1 14.9 101 383-503 296-410 (456)
346 COG1239 ChlI Mg-chelatase subu 99.0 6.9E-09 1.5E-13 105.3 14.7 168 16-208 14-233 (423)
347 COG0606 Predicted ATPase with 99.0 4.8E-10 1.1E-14 115.1 6.4 48 286-348 175-222 (490)
348 PRK07993 DNA polymerase III su 99.0 9.6E-09 2.1E-13 105.1 15.7 157 51-233 22-202 (334)
349 PRK06090 DNA polymerase III su 99.0 1.8E-08 4E-13 101.6 17.4 149 23-205 7-178 (319)
350 PF00158 Sigma54_activat: Sigm 99.0 1.8E-09 3.8E-14 99.3 8.7 134 21-185 1-154 (168)
351 PF05621 TniB: Bacterial TniB 99.0 2.6E-08 5.6E-13 98.0 17.2 188 324-528 61-284 (302)
352 TIGR02974 phageshock_pspF psp 99.0 4.3E-09 9.3E-14 107.8 12.4 195 21-244 1-233 (329)
353 TIGR00368 Mg chelatase-related 99.0 2.8E-09 6E-14 114.3 11.4 172 287-514 189-422 (499)
354 smart00763 AAA_PrkA PrkA AAA d 99.0 2.2E-08 4.7E-13 101.5 16.8 176 13-209 44-329 (361)
355 KOG0745 Putative ATP-dependent 99.0 3.5E-09 7.5E-14 106.4 10.9 99 54-152 227-331 (564)
356 KOG2035 Replication factor C, 99.0 3.4E-08 7.4E-13 93.9 16.5 179 286-505 9-227 (351)
357 PRK11608 pspF phage shock prot 98.9 7.1E-09 1.5E-13 106.3 12.9 198 17-243 4-239 (326)
358 TIGR02031 BchD-ChlD magnesium 98.9 1.2E-08 2.7E-13 112.2 15.7 140 54-207 17-174 (589)
359 TIGR00368 Mg chelatase-related 98.9 7.8E-09 1.7E-13 110.9 13.2 153 16-198 189-395 (499)
360 PF12775 AAA_7: P-loop contain 98.9 1.1E-09 2.3E-14 108.9 5.6 148 52-209 32-195 (272)
361 KOG0990 Replication factor C, 98.9 2E-08 4.3E-13 97.7 13.3 190 279-507 30-233 (360)
362 smart00382 AAA ATPases associa 98.9 1.1E-08 2.4E-13 91.1 10.8 125 53-194 2-147 (148)
363 PRK08699 DNA polymerase III su 98.9 6.5E-09 1.4E-13 105.9 10.1 131 322-472 19-183 (325)
364 smart00350 MCM minichromosome 98.9 8.1E-09 1.8E-13 112.3 10.8 141 53-208 236-401 (509)
365 TIGR00764 lon_rel lon-related 98.9 6.4E-08 1.4E-12 106.8 17.9 50 16-80 15-64 (608)
366 PRK15424 propionate catabolism 98.9 2E-08 4.3E-13 108.5 13.3 163 17-209 217-418 (538)
367 TIGR01817 nifA Nif-specific re 98.9 7.7E-09 1.7E-13 113.8 10.1 199 16-243 193-427 (534)
368 PRK07276 DNA polymerase III su 98.9 1.4E-07 3.1E-12 93.7 18.1 170 295-505 7-199 (290)
369 smart00350 MCM minichromosome 98.9 2E-08 4.2E-13 109.3 13.1 164 291-475 204-401 (509)
370 TIGR02031 BchD-ChlD magnesium 98.9 3.6E-08 7.8E-13 108.6 15.2 133 324-474 16-174 (589)
371 COG3829 RocR Transcriptional r 98.9 1.3E-08 2.9E-13 106.1 10.9 204 13-242 239-477 (560)
372 PRK05917 DNA polymerase III su 98.9 2.4E-08 5.1E-13 98.8 12.1 122 321-461 16-154 (290)
373 PRK08699 DNA polymerase III su 98.8 3.9E-08 8.5E-13 100.2 14.1 135 51-205 19-183 (325)
374 TIGR02329 propionate_PrpR prop 98.8 1.3E-08 2.7E-13 110.1 11.0 165 16-209 209-403 (526)
375 PF07726 AAA_3: ATPase family 98.8 1.7E-09 3.6E-14 92.3 2.5 108 326-452 1-129 (131)
376 COG5245 DYN1 Dynein, heavy cha 98.8 2.3E-08 5E-13 112.7 11.9 384 51-471 1492-1961(3164)
377 PRK12377 putative replication 98.8 1.7E-08 3.8E-13 98.4 9.8 69 325-395 102-175 (248)
378 PRK05022 anaerobic nitric oxid 98.8 3.3E-08 7.1E-13 107.9 13.0 200 17-246 185-422 (509)
379 PRK05818 DNA polymerase III su 98.8 1.7E-07 3.6E-12 90.7 16.4 121 322-461 5-147 (261)
380 PRK10820 DNA-binding transcrip 98.8 4.3E-08 9.3E-13 107.0 13.9 154 16-200 201-381 (520)
381 COG1239 ChlI Mg-chelatase subu 98.8 1.1E-07 2.4E-12 96.6 15.7 160 287-476 14-234 (423)
382 COG2204 AtoC Response regulato 98.8 2.4E-08 5.2E-13 104.3 11.0 199 17-246 139-376 (464)
383 PRK15429 formate hydrogenlyase 98.8 7.7E-08 1.7E-12 109.0 16.0 198 16-244 373-609 (686)
384 TIGR02974 phageshock_pspF psp 98.8 6.2E-08 1.3E-12 99.3 13.7 169 324-511 22-233 (329)
385 PRK09862 putative ATP-dependen 98.8 4.9E-08 1.1E-12 104.3 13.3 143 288-464 189-391 (506)
386 PF05621 TniB: Bacterial TniB 98.8 8.3E-08 1.8E-12 94.4 13.8 219 4-248 25-273 (302)
387 PRK11608 pspF phage shock prot 98.8 9.4E-08 2E-12 98.1 14.4 193 288-510 4-239 (326)
388 COG3604 FhlA Transcriptional r 98.8 3.7E-08 8E-13 101.4 10.7 205 16-244 220-456 (550)
389 PF00158 Sigma54_activat: Sigm 98.8 5.4E-08 1.2E-12 89.5 10.8 98 324-438 22-143 (168)
390 PRK08116 hypothetical protein; 98.8 1.3E-08 2.9E-13 101.1 7.3 123 324-463 114-251 (268)
391 KOG1514 Origin recognition com 98.8 3.1E-07 6.7E-12 98.1 17.5 201 20-246 397-630 (767)
392 PF03215 Rad17: Rad17 cell cyc 98.8 2.9E-07 6.3E-12 99.1 17.7 213 9-245 3-269 (519)
393 PRK07952 DNA replication prote 98.8 4.7E-08 1E-12 95.1 10.6 69 325-395 100-174 (244)
394 TIGR01817 nifA Nif-specific re 98.7 3E-08 6.6E-13 109.1 10.1 204 286-527 192-439 (534)
395 PRK07132 DNA polymerase III su 98.7 1.9E-07 4.1E-12 93.7 14.7 127 322-472 16-160 (299)
396 PRK11388 DNA-binding transcrip 98.7 6E-08 1.3E-12 109.2 12.5 198 16-243 322-553 (638)
397 KOG0990 Replication factor C, 98.7 5E-08 1.1E-12 94.9 10.1 170 9-213 25-209 (360)
398 COG1221 PspF Transcriptional r 98.7 4E-08 8.7E-13 100.8 10.0 198 286-514 74-312 (403)
399 KOG2680 DNA helicase TIP49, TB 98.7 3.4E-07 7.3E-12 88.0 14.9 88 439-531 339-427 (454)
400 PRK05022 anaerobic nitric oxid 98.7 2.4E-07 5.1E-12 101.2 15.5 194 288-512 185-421 (509)
401 KOG1514 Origin recognition com 98.7 5.3E-07 1.2E-11 96.3 17.3 196 325-534 423-656 (767)
402 PRK11388 DNA-binding transcrip 98.7 1.6E-07 3.5E-12 105.7 14.4 206 286-530 321-568 (638)
403 PRK15429 formate hydrogenlyase 98.7 1.2E-07 2.5E-12 107.5 13.2 193 287-511 373-609 (686)
404 smart00763 AAA_PrkA PrkA AAA d 98.7 1.8E-07 3.8E-12 94.9 13.0 61 289-357 49-118 (361)
405 COG3829 RocR Transcriptional r 98.7 4.8E-08 1E-12 102.0 8.9 207 285-527 240-491 (560)
406 PRK09862 putative ATP-dependen 98.7 5.8E-08 1.3E-12 103.7 9.4 153 16-198 188-392 (506)
407 PRK15424 propionate catabolism 98.7 1E-07 2.2E-12 103.1 11.3 193 287-510 216-464 (538)
408 PTZ00111 DNA replication licen 98.7 1.5E-07 3.3E-12 105.2 12.8 173 19-208 450-658 (915)
409 KOG2227 Pre-initiation complex 98.7 7.7E-07 1.7E-11 91.0 16.6 188 19-230 150-363 (529)
410 PRK06835 DNA replication prote 98.7 4E-08 8.7E-13 100.0 7.5 69 325-395 184-258 (329)
411 TIGR02329 propionate_PrpR prop 98.6 1.4E-07 2.9E-12 102.2 11.2 193 287-510 209-449 (526)
412 PRK08181 transposase; Validate 98.6 4.4E-08 9.5E-13 96.8 6.4 70 324-395 106-179 (269)
413 PRK08116 hypothetical protein; 98.6 1.8E-07 4E-12 92.9 10.9 123 53-196 114-251 (268)
414 PRK05917 DNA polymerase III su 98.6 4.3E-07 9.2E-12 90.0 13.1 125 51-194 17-154 (290)
415 PRK10820 DNA-binding transcrip 98.6 3E-07 6.5E-12 100.4 13.3 196 285-511 199-437 (520)
416 KOG1942 DNA helicase, TBP-inte 98.6 1.8E-06 3.8E-11 82.9 16.6 106 116-241 296-415 (456)
417 PF03215 Rad17: Rad17 cell cyc 98.6 7.5E-07 1.6E-11 96.0 16.0 207 281-512 10-269 (519)
418 COG0606 Predicted ATPase with 98.6 2.5E-08 5.4E-13 102.7 4.3 48 15-77 175-222 (490)
419 COG1484 DnaC DNA replication p 98.6 1.2E-07 2.5E-12 93.4 8.8 71 323-395 104-179 (254)
420 PRK06526 transposase; Provisio 98.6 4.5E-08 9.7E-13 96.3 5.7 70 324-395 98-171 (254)
421 PRK13765 ATP-dependent proteas 98.6 4.1E-07 9E-12 100.1 13.8 54 282-350 23-76 (637)
422 KOG3595 Dyneins, heavy chain [ 98.6 2.6E-06 5.7E-11 102.8 21.5 328 54-391 128-531 (1395)
423 COG3604 FhlA Transcriptional r 98.6 1.9E-07 4.1E-12 96.3 9.9 194 286-511 219-456 (550)
424 PF01637 Arch_ATPase: Archaeal 98.6 2.1E-07 4.6E-12 90.8 10.1 182 294-501 3-232 (234)
425 KOG2680 DNA helicase TIP49, TB 98.6 2.9E-06 6.3E-11 81.8 17.0 129 116-272 288-429 (454)
426 PF14532 Sigma54_activ_2: Sigm 98.6 1.6E-07 3.5E-12 83.8 7.9 126 22-193 1-137 (138)
427 PRK08181 transposase; Validate 98.6 1.9E-07 4.2E-12 92.2 9.1 87 52-152 105-195 (269)
428 PF01637 Arch_ATPase: Archaeal 98.6 7.2E-07 1.6E-11 87.1 13.1 181 22-230 2-229 (234)
429 TIGR02655 circ_KaiC circadian 98.6 6.4E-07 1.4E-11 97.0 13.4 78 320-397 259-367 (484)
430 PF13173 AAA_14: AAA domain 98.6 2.3E-07 5E-12 81.6 8.1 69 325-395 3-73 (128)
431 COG2204 AtoC Response regulato 98.5 5.6E-07 1.2E-11 94.2 12.0 195 287-513 138-376 (464)
432 KOG2227 Pre-initiation complex 98.5 3.4E-06 7.3E-11 86.4 17.2 199 290-511 150-379 (529)
433 PRK09183 transposase/IS protei 98.5 1.3E-07 2.9E-12 93.5 7.0 72 323-395 101-176 (259)
434 PRK06835 DNA replication prote 98.5 4.7E-07 1E-11 92.2 11.1 111 54-185 184-305 (329)
435 PRK12377 putative replication 98.5 4.3E-07 9.4E-12 88.6 9.8 101 53-172 101-206 (248)
436 PTZ00111 DNA replication licen 98.5 1.3E-06 2.9E-11 97.9 14.6 160 291-469 451-652 (915)
437 PF12774 AAA_6: Hydrolytic ATP 98.5 1.7E-06 3.6E-11 83.7 13.5 136 52-204 31-177 (231)
438 TIGR02915 PEP_resp_reg putativ 98.5 5.2E-07 1.1E-11 97.4 10.9 197 18-244 138-372 (445)
439 PRK08939 primosomal protein Dn 98.5 2.2E-07 4.7E-12 94.0 7.1 70 323-394 155-228 (306)
440 PF13173 AAA_14: AAA domain 98.5 9.5E-07 2E-11 77.7 10.1 120 53-199 2-127 (128)
441 PRK07952 DNA replication prote 98.5 9.1E-07 2E-11 86.2 10.9 70 54-129 100-175 (244)
442 PRK07276 DNA polymerase III su 98.5 2.6E-06 5.7E-11 84.7 14.3 147 24-204 7-172 (290)
443 PF01695 IstB_IS21: IstB-like 98.5 6.4E-08 1.4E-12 90.0 2.6 70 323-394 46-119 (178)
444 PRK06921 hypothetical protein; 98.5 3.4E-07 7.4E-12 90.8 7.8 69 323-394 116-188 (266)
445 PRK10923 glnG nitrogen regulat 98.5 2.2E-06 4.8E-11 93.2 14.3 198 18-244 137-371 (469)
446 PRK07132 DNA polymerase III su 98.5 4.6E-06 9.9E-11 83.8 15.3 130 52-205 17-160 (299)
447 PF14532 Sigma54_activ_2: Sigm 98.4 4.1E-07 8.9E-12 81.2 6.8 86 324-438 21-109 (138)
448 PRK13765 ATP-dependent proteas 98.4 1.1E-05 2.4E-10 89.0 18.8 53 12-79 24-76 (637)
449 PRK06526 transposase; Provisio 98.4 2.7E-07 5.8E-12 90.8 5.6 87 52-152 97-187 (254)
450 PRK05818 DNA polymerase III su 98.4 2.2E-06 4.8E-11 83.1 11.8 124 52-194 6-147 (261)
451 TIGR02915 PEP_resp_reg putativ 98.4 8.4E-07 1.8E-11 95.8 9.7 165 324-511 162-372 (445)
452 PRK09302 circadian clock prote 98.4 6.9E-06 1.5E-10 90.0 16.8 78 320-397 269-377 (509)
453 PRK06921 hypothetical protein; 98.4 1.7E-06 3.7E-11 85.8 10.8 69 52-127 116-188 (266)
454 KOG2228 Origin recognition com 98.4 3.7E-06 8E-11 82.6 12.5 166 19-207 24-219 (408)
455 PF13401 AAA_22: AAA domain; P 98.4 1.3E-06 2.9E-11 77.0 8.7 98 324-436 4-125 (131)
456 KOG1970 Checkpoint RAD17-RFC c 98.4 1.5E-05 3.3E-10 83.2 16.5 215 8-243 65-319 (634)
457 PRK09183 transposase/IS protei 98.3 1.2E-06 2.5E-11 86.8 7.6 88 52-152 101-192 (259)
458 PRK11361 acetoacetate metaboli 98.3 1.9E-06 4E-11 93.5 9.6 131 52-201 165-321 (457)
459 PRK13406 bchD magnesium chelat 98.3 4.1E-06 8.9E-11 91.7 12.1 186 325-531 26-248 (584)
460 PF05729 NACHT: NACHT domain 98.3 9.1E-06 2E-10 74.7 12.8 143 55-208 2-164 (166)
461 KOG0478 DNA replication licens 98.3 1.4E-06 3.1E-11 92.6 8.1 173 20-207 430-626 (804)
462 PF01695 IstB_IS21: IstB-like 98.3 4.8E-07 1E-11 84.1 4.0 100 52-171 46-149 (178)
463 COG1484 DnaC DNA replication p 98.3 3E-06 6.5E-11 83.5 9.7 68 52-128 104-179 (254)
464 TIGR01818 ntrC nitrogen regula 98.3 4E-06 8.8E-11 91.0 11.6 173 52-244 156-367 (463)
465 KOG1808 AAA ATPase containing 98.3 2.1E-06 4.4E-11 102.1 9.4 140 54-208 441-600 (1856)
466 PF13401 AAA_22: AAA domain; P 98.3 1.5E-06 3.3E-11 76.6 6.4 87 53-151 4-113 (131)
467 COG3283 TyrR Transcriptional r 98.3 2.7E-05 5.8E-10 77.1 15.3 155 16-201 201-377 (511)
468 PRK13406 bchD magnesium chelat 98.3 1.3E-05 2.8E-10 87.9 14.2 132 54-199 26-174 (584)
469 PRK10923 glnG nitrogen regulat 98.2 1.2E-05 2.6E-10 87.4 13.4 200 290-527 138-382 (469)
470 KOG2170 ATPase of the AAA+ sup 98.2 1E-05 2.2E-10 78.5 10.9 137 19-171 82-224 (344)
471 TIGR01818 ntrC nitrogen regula 98.2 4.4E-06 9.4E-11 90.8 9.5 185 325-530 158-381 (463)
472 PF00493 MCM: MCM2/3/5 family 98.2 1.3E-06 2.8E-11 89.7 5.0 167 19-210 24-224 (331)
473 PRK15115 response regulator Gl 98.2 1.4E-05 2.9E-10 86.4 12.9 173 52-243 156-366 (444)
474 KOG0480 DNA replication licens 98.2 8.8E-06 1.9E-10 86.1 10.2 165 18-207 344-542 (764)
475 PRK06851 hypothetical protein; 98.2 3.4E-05 7.3E-10 79.3 14.3 34 325-358 215-251 (367)
476 PRK11361 acetoacetate metaboli 98.2 1.3E-05 2.8E-10 87.0 12.0 176 325-528 167-388 (457)
477 KOG1970 Checkpoint RAD17-RFC c 98.1 5.7E-05 1.2E-09 79.1 15.3 175 324-514 110-323 (634)
478 PRK08939 primosomal protein Dn 98.1 4.2E-06 9E-11 84.7 7.0 71 52-128 155-229 (306)
479 PRK15115 response regulator Gl 98.1 2.2E-05 4.7E-10 84.8 12.8 177 325-529 158-380 (444)
480 PF14516 AAA_35: AAA-like doma 98.1 0.00017 3.7E-09 74.3 18.3 170 52-230 30-234 (331)
481 PF00910 RNA_helicase: RNA hel 98.1 6.6E-06 1.4E-10 69.8 6.2 24 327-350 1-24 (107)
482 cd01120 RecA-like_NTPases RecA 98.1 1.1E-05 2.4E-10 73.9 8.3 110 327-440 2-138 (165)
483 PHA00729 NTP-binding motif con 98.1 9.2E-06 2E-10 77.4 7.7 27 54-80 18-44 (226)
484 PF05729 NACHT: NACHT domain 98.1 4.1E-05 8.8E-10 70.3 11.8 140 326-476 2-165 (166)
485 PF00931 NB-ARC: NB-ARC domain 98.1 6.6E-05 1.4E-09 75.9 14.0 167 25-229 2-196 (287)
486 COG3267 ExeA Type II secretory 98.1 0.00024 5.2E-09 67.8 16.4 177 54-247 52-256 (269)
487 KOG2543 Origin recognition com 98.0 9.7E-05 2.1E-09 74.1 14.2 165 19-207 6-193 (438)
488 PLN03210 Resistant to P. syrin 98.0 0.0001 2.2E-09 88.6 17.5 180 16-229 181-389 (1153)
489 PF06309 Torsin: Torsin; Inte 98.0 4E-05 8.6E-10 65.6 9.8 53 19-77 25-77 (127)
490 TIGR02012 tigrfam_recA protein 98.0 4.1E-05 9E-10 77.3 11.2 118 320-437 51-190 (321)
491 PF03969 AFG1_ATPase: AFG1-lik 98.0 7.7E-06 1.7E-10 84.5 6.1 105 321-442 59-172 (362)
492 PF12775 AAA_7: P-loop contain 98.0 5.2E-06 1.1E-10 82.7 4.5 135 324-476 33-195 (272)
493 PRK06581 DNA polymerase III su 98.0 0.00051 1.1E-08 65.4 17.2 149 322-491 13-176 (263)
494 PLN03210 Resistant to P. syrin 98.0 0.00083 1.8E-08 81.0 23.6 176 286-496 180-389 (1153)
495 PF00910 RNA_helicase: RNA hel 98.0 1.3E-05 2.9E-10 67.9 6.1 24 56-79 1-24 (107)
496 COG1241 MCM2 Predicted ATPase 98.0 7.9E-06 1.7E-10 89.6 5.5 173 18-210 285-486 (682)
497 PRK10365 transcriptional regul 98.0 3.2E-05 6.9E-10 83.5 9.8 164 324-510 162-371 (441)
498 TIGR02688 conserved hypothetic 97.9 9.7E-05 2.1E-09 76.3 12.2 94 323-438 208-314 (449)
499 PF13191 AAA_16: AAA ATPase do 97.9 2.3E-05 5E-10 73.5 7.1 58 21-88 2-62 (185)
500 cd00983 recA RecA is a bacter 97.9 6.4E-05 1.4E-09 76.0 10.2 118 320-437 51-190 (325)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-99 Score=767.80 Aligned_cols=527 Identities=45% Similarity=0.712 Sum_probs=492.1
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~ 96 (611)
.|++|+|++.....|.+.+.. +.+++.|..+|+.||+++||+||||||||++|+++|.+++.+|+.+++.++.+...|+
T Consensus 188 ~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGE 266 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGE 266 (802)
T ss_pred chhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcc
Confidence 469999999999999999988 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccc
Q 007255 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (611)
Q Consensus 97 ~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l 175 (611)
+++.++++|+++.... |||+||||||.+.+.++ .+.++..+++.+|++.||+..........|+||++||+|+.+
T Consensus 267 SEkkiRelF~~A~~~a----PcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 267 SEKKIRELFDQAKSNA----PCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred cHHHHHHHHHHHhccC----CeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 9999999999999775 99999999999999986 455778899999999999987766655679999999999999
Q ss_pred cHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccc--
Q 007255 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANE-- 253 (611)
Q Consensus 176 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~-- 253 (611)
||+|+|+|||+++|.+..|+..+|.+||+.++++..++.++++..+|..|.||+|.||..+|.+|...+++|..+...
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p 422 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP 422 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988654100
Q ss_pred ----------------------------------------------------cccccchhHHHHHHHHhccCCccccccc
Q 007255 254 ----------------------------------------------------CAGVLSVTMEDWRHARSVVGPSITRGVT 281 (611)
Q Consensus 254 ----------------------------------------------------~~~~~~v~~ed~~~a~~~i~~~~~~~~~ 281 (611)
....+.+..+||..|...++|+..+..-
T Consensus 423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF 502 (802)
T KOG0733|consen 423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF 502 (802)
T ss_pred cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence 0112456789999999999999999999
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~ 361 (611)
..+|.++|+||+++++++.+|+.++.+|+++++.|+++|+..|.|+|||||||||||.||+|+|+|.+.+|+.+.+++++
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELl 582 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELL 582 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcc
Q 007255 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHA 441 (611)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 441 (611)
++|+|++|..++++|..|+...||||||||+|.|+++|+... .....|++|+||.+|||++.+.+|.||++||+|+.
T Consensus 583 NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 999999999999999999999999999999999999997544 34578999999999999999999999999999999
Q ss_pred cchhccCCCCccceeecCCCCHHHHHHHHHHHhc--CCCCCCcccHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhhcc
Q 007255 442 IDAALMRPGRFDLVLYVPPPDLEARHEILRVHTR--NMKVGDDVDLRSIAEETE--LFTGAELEGLCREAGIVALREDIS 517 (611)
Q Consensus 442 ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~--g~s~~~i~~~~~~a~~~a~~~~~~ 517 (611)
+|||++||||||+.+|+++|+.++|..||+.+++ +.++..++|++.+|..+. ||||+|+..+|++|...|+++.+.
T Consensus 660 IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~ 739 (802)
T KOG0733|consen 660 IDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLF 739 (802)
T ss_pred cchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 788889999999998877 999999999999999999998752
Q ss_pred c--------------ccccHHHHHHHHhhcCCCCCHHHHHHHHHHhhc
Q 007255 518 A--------------TAVRNRHFQTVKDSLKPALTKEEIDSYSSFMKS 551 (611)
Q Consensus 518 ~--------------~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 551 (611)
. ..++..||.+|+++++|++++.+...|....++
T Consensus 740 ~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~ 787 (802)
T KOG0733|consen 740 EIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKS 787 (802)
T ss_pred hccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhh
Confidence 1 236778999999999999999999999887655
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-93 Score=733.03 Aligned_cols=509 Identities=52% Similarity=0.886 Sum_probs=487.8
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccchH
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESE 98 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~~ 98 (611)
++++|+....+.+++.+..|+..+..+...|.++|+++|+|||||||||.+++++|++.++.++.+++.++...+.|+++
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte 263 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE 263 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHH
Q 007255 99 KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPA 178 (611)
Q Consensus 99 ~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~ 178 (611)
..+++.|+++..... |+++||||+|.+++.+........++..+++.+++.... ..+++++++||+++.||++
T Consensus 264 ~~LR~~f~~a~k~~~---psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~----~~~vivl~atnrp~sld~a 336 (693)
T KOG0730|consen 264 SNLRKAFAEALKFQV---PSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKP----DAKVIVLAATNRPDSLDPA 336 (693)
T ss_pred HHHHHHHHHHhccCC---CeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcC----cCcEEEEEecCCccccChh
Confidence 999999999875432 999999999999998876666678999999999998763 3479999999999999999
Q ss_pred hhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhccccccccccc
Q 007255 179 LRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVL 258 (611)
Q Consensus 179 l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~ 258 (611)
++| |||+..+.+..|+..+|.+|++.+.+......+.++..++..++||+|.|+..+|++|...+.++
T Consensus 337 lRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~----------- 404 (693)
T KOG0730|consen 337 LRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR----------- 404 (693)
T ss_pred hhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----------
Confidence 999 99999999999999999999999999999888889999999999999999999999999988886
Q ss_pred chhHHHHHHHHhccCCcccccccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChH
Q 007255 259 SVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKT 338 (611)
Q Consensus 259 ~v~~ed~~~a~~~i~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT 338 (611)
++++|..+...+.|+..+.+..+.|+++|+||+|++++|+.|++.+.||++|++.|.++|+.||+|+|||||||||||
T Consensus 405 --~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT 482 (693)
T KOG0730|consen 405 --TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKT 482 (693)
T ss_pred --hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchH
Confidence 678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHH
Q 007255 339 TLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (611)
Q Consensus 339 ~la~ala~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll 418 (611)
++|+|+|++.+++|+.++++++.++|+|++|..++.+|+.|+...|||+|+||||++.+.|++.++ +..+|++++||
T Consensus 483 ~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLL 559 (693)
T KOG0730|consen 483 LLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLL 559 (693)
T ss_pred HHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999974443 77899999999
Q ss_pred HHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHH
Q 007255 419 TEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGA 498 (611)
Q Consensus 419 ~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~ 498 (611)
++|||++...+++||++||+|+.||+|++||||||++|+||+||.+.|.+||+.+++++++..++|++.||+.|+||||+
T Consensus 560 tEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGA 639 (693)
T KOG0730|consen 560 TEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGA 639 (693)
T ss_pred HHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCCCCCHHHHHHHHHHhhc
Q 007255 499 ELEGLCREAGIVALREDISATAVRNRHFQTVKDSLKPALTKEEIDSYSSFMKS 551 (611)
Q Consensus 499 ~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 551 (611)
||..+|++|+..|+++.+....++..||.+++...+++++.++++.|++|.++
T Consensus 640 el~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 640 EIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999754
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.2e-75 Score=658.41 Aligned_cols=527 Identities=47% Similarity=0.806 Sum_probs=478.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~ 95 (611)
..+++|+|++++++.+.+.+..|+.+++.+..+|+.++.++||+||||||||++++++|++++.+++.+++.++...+.|
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g 254 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYG 254 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccccc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccc
Q 007255 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA 174 (611)
Q Consensus 96 ~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~ 174 (611)
.....++.+|+.+... .|+||||||+|.+++.++. .++.+.+++.+|+.+++..... ..+++|++||.++.
T Consensus 255 ~~~~~l~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~----~~vivI~atn~~~~ 326 (733)
T TIGR01243 255 ESEERLREIFKEAEEN----APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR----GRVIVIGATNRPDA 326 (733)
T ss_pred HHHHHHHHHHHHHHhc----CCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC----CCEEEEeecCChhh
Confidence 9999999999988644 4899999999999887643 2344567888999999876432 36899999999999
Q ss_pred ccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhccccc--
Q 007255 175 IDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDAN-- 252 (611)
Q Consensus 175 l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~-- 252 (611)
+|+++++++||+..+.++.|+.++|.+|++.+.....+..+.++..++..++||++.++..++++|...++++.....
T Consensus 327 ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~ 406 (733)
T TIGR01243 327 LDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKI 406 (733)
T ss_pred cCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999998888887788899999999999999999999999998887753311
Q ss_pred ---------ccccccchhHHHHHHHHhccCCcccccccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCC
Q 007255 253 ---------ECAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISP 323 (611)
Q Consensus 253 ---------~~~~~~~v~~ed~~~a~~~i~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~ 323 (611)
.......++.+||..+...+.|+..+......|.++|++++|++.+|+.|.+.+.+|+.+++.+.++|..+
T Consensus 407 ~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~ 486 (733)
T TIGR01243 407 NFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRP 486 (733)
T ss_pred ccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCC
Confidence 11234567889999999999998877777778999999999999999999999999999999999999999
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCC
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSS 403 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~ 403 (611)
++|+|||||||||||++|+++|++++++|+.++++++.++|+|+++..++.+|..++...||||||||+|.+++.|+...
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~ 566 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF 566 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886433
Q ss_pred CCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcc
Q 007255 404 STSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDV 483 (611)
Q Consensus 404 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~ 483 (611)
+ .....+++++||.+||++...++++||+|||+|+.+|++++||||||++|++|+|+.++|.+||+.+.++.+...++
T Consensus 567 ~--~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~ 644 (733)
T TIGR01243 567 D--TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV 644 (733)
T ss_pred C--ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC
Confidence 2 23567899999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc----------------cccccHHHHHHHHhhcCCCCCHHHHHHHHH
Q 007255 484 DLRSIAEETELFTGAELEGLCREAGIVALREDIS----------------ATAVRNRHFQTVKDSLKPALTKEEIDSYSS 547 (611)
Q Consensus 484 ~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~----------------~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~ 547 (611)
+++.+|+.++||||+||.++|++|+..++++.+. ...++..||..++.+++|++++++++.|++
T Consensus 645 ~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~ 724 (733)
T TIGR01243 645 DLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYER 724 (733)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999886431 236999999999999999999999999999
Q ss_pred HhhcC
Q 007255 548 FMKSQ 552 (611)
Q Consensus 548 ~~~~~ 552 (611)
|.+..
T Consensus 725 ~~~~~ 729 (733)
T TIGR01243 725 LAKEL 729 (733)
T ss_pred HHHHh
Confidence 98765
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-73 Score=590.60 Aligned_cols=520 Identities=36% Similarity=0.593 Sum_probs=444.2
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccch
Q 007255 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGES 97 (611)
Q Consensus 18 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~ 97 (611)
+-..-+.+..+-.+..++..+ ......+......+||+|+||||||++++++|+++|.+++.++|.++.....+.+
T Consensus 400 ~~~~~~~~~~~~~l~~vl~p~----~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~ 475 (953)
T KOG0736|consen 400 SLSPPGLEAKVLELVAVLSPQ----KQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHT 475 (953)
T ss_pred cCCCccchHHHHHHHHHhCcc----cCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchh
Confidence 334456666666555554322 2222234456678999999999999999999999999999999999999988889
Q ss_pred HHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccH
Q 007255 98 EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDP 177 (611)
Q Consensus 98 ~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~ 177 (611)
+..+...|..++.. +|+|||+-++|.+.-+.++ ..+.+++..+...+..... ....+++++|++|+..+.+++
T Consensus 476 etkl~~~f~~a~~~----~pavifl~~~dvl~id~dg--ged~rl~~~i~~~ls~e~~-~~~~~~~ivv~t~~s~~~lp~ 548 (953)
T KOG0736|consen 476 ETKLQAIFSRARRC----SPAVLFLRNLDVLGIDQDG--GEDARLLKVIRHLLSNEDF-KFSCPPVIVVATTSSIEDLPA 548 (953)
T ss_pred HHHHHHHHHHHhhc----CceEEEEeccceeeecCCC--chhHHHHHHHHHHHhcccc-cCCCCceEEEEeccccccCCH
Confidence 99999999888744 6999999999998855544 3445666665555552111 123457999999999999999
Q ss_pred HhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccc------
Q 007255 178 ALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDA------ 251 (611)
Q Consensus 178 ~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~------ 251 (611)
.+++ .|..+|.++.|+.++|.+|++.++....++.++....++.+|.||+.+++..+.......+..+..+.
T Consensus 549 ~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~ 626 (953)
T KOG0736|consen 549 DIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGL 626 (953)
T ss_pred HHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccc
Confidence 9998 77789999999999999999999999999999999999999999999999998877644444332221
Q ss_pred ------cccccccchhHHHHHHHHhccCCccccc-ccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCC
Q 007255 252 ------NECAGVLSVTMEDWRHARSVVGPSITRG-VTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPV 324 (611)
Q Consensus 252 ------~~~~~~~~v~~ed~~~a~~~i~~~~~~~-~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~ 324 (611)
........++++||..+....+...... ....+|+++|+||+|++++|..+.+.+..|++|++.|.. |+++.
T Consensus 627 ~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkR 705 (953)
T KOG0736|consen 627 QEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKR 705 (953)
T ss_pred hhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-ccccc
Confidence 1223346789999999988776665544 467899999999999999999999999999999999986 88888
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCC
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSS 404 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~ 404 (611)
.|+|||||||||||.+|+|+|+++..+|+++.+++++++|+|++|++++.+|++|+...|||||+||+|+++++||.+++
T Consensus 706 SGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGD 785 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGD 785 (953)
T ss_pred ceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCcchhHHHHHHHHHHhcCCC--CCCCeEEEEecCCCcccchhccCCCCccceeecCCC-CHHHHHHHHHHHhcCCCCCC
Q 007255 405 TSITVGERLLSTLLTEMDGLE--QAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPP-DLEARHEILRVHTRNMKVGD 481 (611)
Q Consensus 405 ~~~~~~~~~~~~ll~~l~~~~--~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p-~~~~r~~il~~~~~~~~~~~ 481 (611)
+++.-+|++++||.+||++. ....++||||||+|+.|||||+||||||+.+|++.+ |.+.+..+|+...+++.++.
T Consensus 786 -SGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLde 864 (953)
T KOG0736|consen 786 -SGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDE 864 (953)
T ss_pred -ccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCC
Confidence 44666999999999999997 577899999999999999999999999999999976 55779999999999999999
Q ss_pred cccHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhhccc---------------ccccHHHHHHHHhhcCCCCCHHHHHHH
Q 007255 482 DVDLRSIAEETE-LFTGAELEGLCREAGIVALREDISA---------------TAVRNRHFQTVKDSLKPALTKEEIDSY 545 (611)
Q Consensus 482 ~~~~~~la~~~~-g~s~~~i~~~~~~a~~~a~~~~~~~---------------~~i~~~~~~~~l~~~~~~~~~~~~~~~ 545 (611)
++++.++|+.++ .|||+|+..+|..|+..|++|.+.. -.++.+||..+..+++|+++..|+..|
T Consensus 865 dVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~y 944 (953)
T KOG0736|consen 865 DVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRY 944 (953)
T ss_pred CcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999997 8999999999999999999987521 248899999999999999999999999
Q ss_pred HHHhhcC
Q 007255 546 SSFMKSQ 552 (611)
Q Consensus 546 ~~~~~~~ 552 (611)
+...++.
T Consensus 945 e~vr~~f 951 (953)
T KOG0736|consen 945 EMVRAQF 951 (953)
T ss_pred HHHHHhh
Confidence 9877654
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-66 Score=533.35 Aligned_cols=452 Identities=35% Similarity=0.563 Sum_probs=393.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECG----AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~----~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
.+.+|||.||+|+|||.|++++++++. +.+..++|+.+...........+..+|.++..+. |+|+++||+|.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~----PSiIvLDdld~ 505 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYA----PSIIVLDDLDC 505 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhC----CcEEEEcchhh
Confidence 457999999999999999999999885 4567789998876665555666777777777664 99999999999
Q ss_pred cCCCCCCCchh----hHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHH
Q 007255 128 LCPRRDHRREQ----DVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEIL 203 (611)
Q Consensus 128 l~~~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il 203 (611)
|+...+..+.+ ..++...+...+..+.... ..+.+|++.+....++|.|.++++|..++.++.|+..+|.+|+
T Consensus 506 l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~---~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL 582 (952)
T KOG0735|consen 506 LASASSNENGQDGVVSERLAAFLNQVIKIYLKRN---RKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEIL 582 (952)
T ss_pred hhccCcccCCcchHHHHHHHHHHHHHHHHHHccC---cEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHH
Confidence 99844322222 2233333334444433322 2479999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhccCCcccccccc
Q 007255 204 KLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSITRGVTV 282 (611)
Q Consensus 204 ~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~~~~~~~~~ 282 (611)
...+.+.... ...+++.++..|+||...|+..++++|...+..... +.....++.++|.++.+.+.|...+++..
T Consensus 583 ~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leri----s~~~klltke~f~ksL~~F~P~aLR~ik~ 658 (952)
T KOG0735|consen 583 TTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERI----SNGPKLLTKELFEKSLKDFVPLALRGIKL 658 (952)
T ss_pred HHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHh----ccCcccchHHHHHHHHHhcChHHhhhccc
Confidence 9988766533 223466699999999999999999999998873221 11222688999999999999999999887
Q ss_pred cCCC-cccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc
Q 007255 283 EIPK-VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (611)
Q Consensus 283 ~~~~-~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~ 361 (611)
..+. +.|+||+|+.++|+.+.+.++||.+++..|...+++.+.|+|||||||||||.+|.++|...+..|+.+.+++++
T Consensus 659 ~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL 738 (952)
T KOG0735|consen 659 VKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELL 738 (952)
T ss_pred cccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHH
Confidence 6665 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcc
Q 007255 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHA 441 (611)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 441 (611)
++|.|.+|++++.+|..|+...|||+|+||+|+++++||-.+ .+..+|++|+||.+|||.+.-+++.|+++|.+|+.
T Consensus 739 ~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs---TGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdl 815 (952)
T KOG0735|consen 739 SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS---TGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDL 815 (952)
T ss_pred HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC---CCchHHHHHHHHHhhccccccceEEEEEecCCccc
Confidence 999999999999999999999999999999999999997544 45689999999999999999999999999999999
Q ss_pred cchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 007255 442 IDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDIS 517 (611)
Q Consensus 442 ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~ 517 (611)
|||||+||||+|+.+++|.|+..+|.+|++..........++|++.+|..|+||||+|+..++-.|...|..+.+.
T Consensus 816 iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~ 891 (952)
T KOG0735|consen 816 IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILK 891 (952)
T ss_pred cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999899999999999999999999999999999999999988643
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-59 Score=509.11 Aligned_cols=487 Identities=46% Similarity=0.734 Sum_probs=438.7
Q ss_pred hhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCC
Q 007255 38 PLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKP 117 (611)
Q Consensus 38 ~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~ 117 (611)
|...+..+..++..++.+++++||||||||.++++++.. +.....++.......+.+.....++..|..+.... |
T Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~----~ 77 (494)
T COG0464 3 PLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLA----P 77 (494)
T ss_pred CccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhC----C
Confidence 455677888899999999999999999999999999999 66667778888888899999999999999988664 7
Q ss_pred eEEEEccccccCCCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCH
Q 007255 118 SVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTA 196 (611)
Q Consensus 118 ~il~IDeid~l~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~ 196 (611)
+++++|++|.+.+.... .......+..+++..++... ... +++++.+|.+..+++++++++||...+.+..|+.
T Consensus 78 ~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~----~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (494)
T COG0464 78 SIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK----RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDE 152 (494)
T ss_pred CeEeechhhhcccCccccccchhhHHHHHHHHhccccc----CCc-eEEEeecCCccccChhHhCccccceeeecCCCCH
Confidence 99999999999988765 34456678889999998876 333 8888899999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhccCCcc
Q 007255 197 EERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSI 276 (611)
Q Consensus 197 ~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~~~ 276 (611)
..+.+|++..........+.+...++..+.|+.+.++..++.++......+.. ........++.+++..+...+.++
T Consensus 153 ~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--~~~~~~~~~~~~~~~~~l~~~~~~- 229 (494)
T COG0464 153 AGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--DLVGEYIGVTEDDFEEALKKVLPS- 229 (494)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--ccCcccccccHHHHHHHHHhcCcc-
Confidence 99999999988888877788899999999999999999999999888887752 112234567888999999988887
Q ss_pred cccccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeec
Q 007255 277 TRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (611)
Q Consensus 277 ~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~ 356 (611)
+.+....+.++|++++|++.+++.+.+.+.+++.+++.|.+.+.++++++|||||||||||++|+++|++++.+|+.+.
T Consensus 230 -~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~ 308 (494)
T COG0464 230 -RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK 308 (494)
T ss_pred -cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEee
Confidence 6667778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEec
Q 007255 357 GAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAAT 436 (611)
Q Consensus 357 ~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t 436 (611)
.+++.++|+|+++++++.+|..|+...||||||||+|++++.|+...+.+ ..+++++|+.+|++++...+++||++|
T Consensus 309 ~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~---~~r~~~~lL~~~d~~e~~~~v~vi~aT 385 (494)
T COG0464 309 GSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGS---GRRVVGQLLTELDGIEKAEGVLVIAAT 385 (494)
T ss_pred CHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchH---HHHHHHHHHHHhcCCCccCceEEEecC
Confidence 99999999999999999999999999999999999999999987544432 369999999999999999999999999
Q ss_pred CCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCC--CCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007255 437 NRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKV--GDDVDLRSIAEETELFTGAELEGLCREAGIVALRE 514 (611)
Q Consensus 437 n~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~ 514 (611)
|+|+.+|+|++|||||++.++||+||.++|..||+.+++.... ..++++..+++.++|||++||..+|++|...++++
T Consensus 386 N~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~ 465 (494)
T COG0464 386 NRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALRE 465 (494)
T ss_pred CCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986554 47899999999999999999999999999999988
Q ss_pred hcccccccHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 007255 515 DISATAVRNRHFQTVKDSLKPALTKEEIDSYSSF 548 (611)
Q Consensus 515 ~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 548 (611)
.. ...++.+||..++...+|+++ |++|
T Consensus 466 ~~-~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 466 AR-RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred hc-cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 75 567999999999999999876 6666
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-56 Score=432.24 Aligned_cols=253 Identities=45% Similarity=0.738 Sum_probs=243.0
Q ss_pred cccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhh
Q 007255 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (611)
Q Consensus 281 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~ 360 (611)
..+.|.++|++|+|+++.++.+++.++.|+++|+.|.++|+.||+|+|||||||||||+||+|+|+..++.|+.+.+++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCc
Q 007255 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPH 440 (611)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 440 (611)
..+|.|++...++.+|..|+...||||||||||++.++|...+.+.+..-.|.+-+||++|||+.+.+++-||+|||+++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 99999999999999999999999999999999999999987777777777888999999999999999999999999999
Q ss_pred ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccc
Q 007255 441 AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATA 520 (611)
Q Consensus 441 ~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~ 520 (611)
.|||||+||||||++|+||+||.+.|.+||++|.+++.+..++||+.||+.++|+||+||+++|.+|++.|+++. ...
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~--R~~ 379 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER--RDE 379 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc--cCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985 778
Q ss_pred ccHHHHHHHHhhcCC
Q 007255 521 VRNRHFQTVKDSLKP 535 (611)
Q Consensus 521 i~~~~~~~~l~~~~~ 535 (611)
++.+||..|.+++..
T Consensus 380 Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 380 VTMEDFLKAVEKVVK 394 (406)
T ss_pred ecHHHHHHHHHHHHh
Confidence 999999999987744
No 8
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-51 Score=396.54 Aligned_cols=270 Identities=39% Similarity=0.683 Sum_probs=249.9
Q ss_pred ccccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecc
Q 007255 278 RGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSG 357 (611)
Q Consensus 278 ~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~ 357 (611)
+++...-|.+.|+||.|++++|+-|++++..|+..|+.|... .+|.+|+|++||||||||+||+|+|.|++..||.++.
T Consensus 200 rdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs 278 (491)
T KOG0738|consen 200 RDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS 278 (491)
T ss_pred HHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEech
Confidence 344455688999999999999999999999999999999864 4677999999999999999999999999999999999
Q ss_pred hhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCC----CCCeEEE
Q 007255 358 AELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ----AKGILVL 433 (611)
Q Consensus 358 ~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~----~~~~~vI 433 (611)
+.+.++|.|++|+.++-+|+.|+.+.|++|||||||+|++.||..+ ....++|++++||.+|||+.. ...|+|+
T Consensus 279 stltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~--EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 279 STLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSS--EHEASRRVKSELLVQMDGVQGTLENSKVVMVL 356 (491)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCcc--chhHHHHHHHHHHHHhhccccccccceeEEEE
Confidence 9999999999999999999999999999999999999999998654 456789999999999999853 2348999
Q ss_pred EecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 007255 434 AATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALR 513 (611)
Q Consensus 434 ~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~ 513 (611)
++||.||+||.||+| ||++.|++|+|+.+.|..++++.++.....++++++.|++.++||||+||.++|++|.+.+++
T Consensus 357 AATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mR 434 (491)
T KOG0738|consen 357 AATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMR 434 (491)
T ss_pred eccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc---------------ccccccHHHHHHHHhhcCCCCCHHHHHHHHHHhhcC
Q 007255 514 EDI---------------SATAVRNRHFQTVKDSLKPALTKEEIDSYSSFMKSQ 552 (611)
Q Consensus 514 ~~~---------------~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 552 (611)
|.+ .+.|++..||..|+++++|+++..++++|++|+...
T Consensus 435 R~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~ef 488 (491)
T KOG0738|consen 435 RKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEF 488 (491)
T ss_pred HHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHh
Confidence 765 235799999999999999999999999999999754
No 9
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.8e-45 Score=388.66 Aligned_cols=395 Identities=22% Similarity=0.353 Sum_probs=308.7
Q ss_pred CCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCC
Q 007255 116 KPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPT 195 (611)
Q Consensus 116 ~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~ 195 (611)
.|+|+++.|+|.++... .+.+.|.++....... + +.+|+.+.+ -.+++.|.+ +...+.+|.|+
T Consensus 81 ~~~~~vl~d~h~~~~~~--------~~~r~l~~l~~~~~~~---~-~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~ 143 (489)
T CHL00195 81 TPALFLLKDFNRFLNDI--------SISRKLRNLSRILKTQ---P-KTIIIIASE--LNIPKELKD---LITVLEFPLPT 143 (489)
T ss_pred CCcEEEEecchhhhcch--------HHHHHHHHHHHHHHhC---C-CEEEEEcCC--CCCCHHHHh---ceeEEeecCcC
Confidence 37899999999887321 2334444433322221 1 234444433 457888875 44578999999
Q ss_pred HHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccccccchhHHH----HHHHHh
Q 007255 196 AEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMED----WRHARS 270 (611)
Q Consensus 196 ~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed----~~~a~~ 270 (611)
.+++.++++.+....... ....++.++..+.|++..+++.++..+.... .. ++.++ +..-.+
T Consensus 144 ~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~----~~---------~~~~~~~~i~~~k~q 210 (489)
T CHL00195 144 ESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY----KT---------IDENSIPLILEEKKQ 210 (489)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----CC---------CChhhHHHHHHHHHH
Confidence 999999998877644333 3346899999999999999998888754321 10 11111 111111
Q ss_pred ccCCcccccccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCC
Q 007255 271 VVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA 350 (611)
Q Consensus 271 ~i~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~ 350 (611)
.+... .......+..+|++|+|++.+|+.+.+.... +.....++|+++++|+|||||||||||++|+++|++++.
T Consensus 211 ~~~~~--~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 211 IISQT--EILEFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred HHhhh--ccccccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 11111 1122233567899999999999998875432 234556789999999999999999999999999999999
Q ss_pred cEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCe
Q 007255 351 SFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGI 430 (611)
Q Consensus 351 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 430 (611)
+++.++++++.++|+|+++.+++.+|+.++..+||||||||+|.++.++...+ ......+++.+|+..|+ .....+
T Consensus 286 ~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~--d~~~~~rvl~~lL~~l~--~~~~~V 361 (489)
T CHL00195 286 PLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG--DSGTTNRVLATFITWLS--EKKSPV 361 (489)
T ss_pred CEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC--CchHHHHHHHHHHHHHh--cCCCce
Confidence 99999999999999999999999999999999999999999999987654322 23456789999999998 356789
Q ss_pred EEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC--CcccHHHHHHhCCCCCHHHHHHHHHHHH
Q 007255 431 LVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG--DDVDLRSIAEETELFTGAELEGLCREAG 508 (611)
Q Consensus 431 ~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~la~~~~g~s~~~i~~~~~~a~ 508 (611)
+||+|||+|+.+|++++|+||||++++++.|+.++|.+||+.++++.... .+.+++.||+.|+||||+||+++|.+|+
T Consensus 362 ~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~ 441 (489)
T CHL00195 362 FVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAM 441 (489)
T ss_pred EEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999886543 4788999999999999999999999999
Q ss_pred HHHHHhhcccccccHHHHHHHHhhcCCC--CCHHHHHHHHHHhhcC
Q 007255 509 IVALREDISATAVRNRHFQTVKDSLKPA--LTKEEIDSYSSFMKSQ 552 (611)
Q Consensus 509 ~~a~~~~~~~~~i~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~ 552 (611)
..|..+ .++++.+||..++..+.|. ...++++.+++|....
T Consensus 442 ~~A~~~---~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 442 YIAFYE---KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred HHHHHc---CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 988876 3779999999999999996 5788899999998653
No 10
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-46 Score=373.68 Aligned_cols=260 Identities=41% Similarity=0.657 Sum_probs=237.4
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcccc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~ 364 (611)
.+++|+|+.|.+++|+.|+|.+.+ ++.|..|.++|.+-|+|+||+||||||||+||+|+|.|.+.+||..++++|-..|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 467899999999999999999986 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccch
Q 007255 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDA 444 (611)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~ 444 (611)
+|....+++.+|..|+...||||||||||.+.++|.... ....++.+|+||.+|||+.++.+++|||+||.|+.||+
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 999999999999999999999999999999999885432 23678899999999999999999999999999999999
Q ss_pred hccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHH
Q 007255 445 ALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNR 524 (611)
Q Consensus 445 al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~ 524 (611)
||.||||||.+|.+|.||..-|.+||+.+++++....++|+.-+|+-|.||||+|+.++++.|+..|.... +..++..
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg--a~~VtM~ 532 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG--AEMVTMK 532 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC--cccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888775 6678888
Q ss_pred HHHHHHhhc------CCCCCHHHHHHHHHHhh
Q 007255 525 HFQTVKDSL------KPALTKEEIDSYSSFMK 550 (611)
Q Consensus 525 ~~~~~l~~~------~~~~~~~~~~~~~~~~~ 550 (611)
|+..+-+++ +..+-.++-.+.-.|..
T Consensus 533 ~LE~akDrIlMG~ERks~~i~~eak~~TAyHE 564 (752)
T KOG0734|consen 533 HLEFAKDRILMGPERKSMVIDEEAKKITAYHE 564 (752)
T ss_pred HHhhhhhheeecccccccccChhhhhhhhhhc
Confidence 888888776 12233444455555554
No 11
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-45 Score=336.77 Aligned_cols=257 Identities=41% Similarity=0.687 Sum_probs=241.9
Q ss_pred cccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhh
Q 007255 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (611)
Q Consensus 281 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~ 360 (611)
....|..+++-++|++...+.+.+.++.|.+||+.|..+|+..|+|+|||||||||||.+|+++|....|.|+.++++++
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCc
Q 007255 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPH 440 (611)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 440 (611)
..+|.|+....++.+|-.|+...|+|+|+||||++.+.|..++++.+....+..-+||++|||++...++-||++||+.+
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccc
Confidence 99999999999999999999999999999999999999987777766667788889999999999999999999999999
Q ss_pred ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccc
Q 007255 441 AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATA 520 (611)
Q Consensus 441 ~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~ 520 (611)
-+|||++||||+|+.|.||+|+.+.|.+|++++.+++.+...+++..+|+...|.||++++.+|.+|.++|+++. .-.
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer--rvh 375 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER--RVH 375 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh--hcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999885 567
Q ss_pred ccHHHHHHHHhhcCCCCCH
Q 007255 521 VRNRHFQTVKDSLKPALTK 539 (611)
Q Consensus 521 i~~~~~~~~l~~~~~~~~~ 539 (611)
++++||.-|..++-...++
T Consensus 376 vtqedfemav~kvm~k~~e 394 (404)
T KOG0728|consen 376 VTQEDFEMAVAKVMQKDSE 394 (404)
T ss_pred ccHHHHHHHHHHHHhcccc
Confidence 9999999998776443333
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-46 Score=350.65 Aligned_cols=271 Identities=34% Similarity=0.591 Sum_probs=245.2
Q ss_pred ccccccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 276 ITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 276 ~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
....+..+.|++.|+|+.|++.+|+.|++++..|+++|+.|.. +..|.+|+||||||||||+.||+|+|.+.+..||++
T Consensus 119 L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 119 LNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred hhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 3445566789999999999999999999999999999999985 446779999999999999999999999999999999
Q ss_pred cchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-CCCCeEEEE
Q 007255 356 SGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-QAKGILVLA 434 (611)
Q Consensus 356 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vI~ 434 (611)
+.+++.++|.|++++.++++|..|+...|+||||||||.+++.|+.. ..+..+|++.+||.+|.|+. ..++++|+|
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en---EseasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN---ESEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC---chHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 99999999999999999999999999999999999999999888643 34567999999999999984 567899999
Q ss_pred ecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 007255 435 ATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALR 513 (611)
Q Consensus 435 ~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~ 513 (611)
+||-||.||.|++| ||++.||+|+|+...|..+++.++...+.. .+.|+..|+++|+||||+||.-+|+.|.+..++
T Consensus 275 ATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvR 352 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVR 352 (439)
T ss_pred cCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHH
Confidence 99999999999999 999999999999999999999998877654 567899999999999999999999999999887
Q ss_pred hhcc--------------------------------------------cccccHHHHHHHHhhcCCCCCHHHHHHHHHHh
Q 007255 514 EDIS--------------------------------------------ATAVRNRHFQTVKDSLKPALTKEEIDSYSSFM 549 (611)
Q Consensus 514 ~~~~--------------------------------------------~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 549 (611)
+-.+ ..+++..||..++.+.+|.+...++.+.++|.
T Consensus 353 kvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft 432 (439)
T KOG0739|consen 353 KVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFT 432 (439)
T ss_pred HhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 7431 12588999999999999999999999988887
Q ss_pred hcC
Q 007255 550 KSQ 552 (611)
Q Consensus 550 ~~~ 552 (611)
+..
T Consensus 433 ~dF 435 (439)
T KOG0739|consen 433 EDF 435 (439)
T ss_pred Hhh
Confidence 643
No 13
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-44 Score=350.07 Aligned_cols=255 Identities=38% Similarity=0.621 Sum_probs=227.7
Q ss_pred ccccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 4 KGRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 4 ~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
.+.+.+++++.+ ++|+|+++++++|++.++.|+.+|+.|.++|+.||++||||||||||||.+|+++|++.++.|+.
T Consensus 139 ~M~v~e~PdvtY---~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIr 215 (406)
T COG1222 139 VMEVEEKPDVTY---EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIR 215 (406)
T ss_pred eeeeccCCCCCh---hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEE
Confidence 345666666666 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCC-CCCchhhHHHHHHHHHHHhcCCCCCCCCCc
Q 007255 84 ISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR-DHRREQDVRIASQLFTLMDSNKPSKTSVPH 162 (611)
Q Consensus 84 v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 162 (611)
+..+++...|.|+..+.++++|..|.... ||||||||||.+...+ +.+...+.+++..++.++.+... +.+.++
T Consensus 216 vvgSElVqKYiGEGaRlVRelF~lAreka----PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG-FD~~~n 290 (406)
T COG1222 216 VVGSELVQKYIGEGARLVRELFELAREKA----PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG-FDPRGN 290 (406)
T ss_pred eccHHHHHHHhccchHHHHHHHHHHhhcC----CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC-CCCCCC
Confidence 99999999999999999999999998765 9999999999999876 34445566777766655544322 123458
Q ss_pred EEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHH
Q 007255 163 VVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATM 242 (611)
Q Consensus 163 v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~ 242 (611)
|-||++||+++.|||+|+|||||++.|+||.|+.+.|.+||+.+..+..+..+++++.++..++|++|.+++++|.+|..
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm 370 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGM 370 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccccccchhHHHHHHHHhccCC
Q 007255 243 SAVKRSSDANECAGVLSVTMEDWRHARSVVGP 274 (611)
Q Consensus 243 ~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~ 274 (611)
.|++.... .++++||..|..++..
T Consensus 371 ~AiR~~R~--------~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 371 FAIRERRD--------EVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHHHhccC--------eecHHHHHHHHHHHHh
Confidence 99986543 6899999999876543
No 14
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-44 Score=332.21 Aligned_cols=250 Identities=38% Similarity=0.683 Sum_probs=236.2
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~ 361 (611)
-+.|.+++.||+|++-.|+.+++.++.|+.+.+.+++.|+.||+|+|+|||||||||++|+|+|+...+.|+.+.++++.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcc
Q 007255 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHA 441 (611)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 441 (611)
.+|.|+....++.+|..|+...|+|+||||+|.++-+|-....+.+....+++-+||++|||+....++-||++||+.+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc
Confidence 99999999999999999999999999999999999998666666666778899999999999999999999999999999
Q ss_pred cchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Q 007255 442 IDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAV 521 (611)
Q Consensus 442 ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i 521 (611)
+|||++||||+|+.|+||+||..++.-++.....++.+.+++|++.+..+-+-.|+++|..+|++|.+.|.++. .-.+
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n--ryvv 384 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN--RYVV 384 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc--ceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999885 5667
Q ss_pred cHHHHHHHHhhc
Q 007255 522 RNRHFQTVKDSL 533 (611)
Q Consensus 522 ~~~~~~~~l~~~ 533 (611)
...||..+....
T Consensus 385 l~kd~e~ay~~~ 396 (408)
T KOG0727|consen 385 LQKDFEKAYKTV 396 (408)
T ss_pred eHHHHHHHHHhh
Confidence 888888887543
No 15
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-44 Score=368.78 Aligned_cols=231 Identities=42% Similarity=0.688 Sum_probs=219.7
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
..+.++|++|+|++.....|.+.+.. +++|+.|..+|+.|++|+|||||||||||+||+|+|++++.+|+.+++.++.+
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 34467899999999999999999988 99999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCC----CCeEEEEecCC
Q 007255 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQA----KGILVLAATNR 438 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----~~~~vI~~tn~ 438 (611)
.+.|++|+.++.+|+.|+...|||+||||||.|.++|.. .+.++.+|++.+||+.||++... +.|+||||||+
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 999999999999999999999999999999999999864 44577899999999999998544 67999999999
Q ss_pred CcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 007255 439 PHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDIS 517 (611)
Q Consensus 439 ~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~ 517 (611)
|+.+||||+|+||||+.|.+..|+..+|..||+..++++.+..++|+..||+.|.||-|+|+.++|.+|+..|++|.+.
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld 417 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILD 417 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999764
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-44 Score=331.17 Aligned_cols=249 Identities=39% Similarity=0.674 Sum_probs=235.3
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccc
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~ 363 (611)
.|...++||+|++...+.|.+++..|+.|++.|.++|++||+|+|+|||||||||.+|+|.|...+..|..+.++.+...
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccc
Q 007255 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAID 443 (611)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld 443 (611)
|.|+..+.++..|..|+...|+||||||+|.+..+|..+....+....|..-+||++|||+.+.+++-||++||+.+-+|
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLD 324 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILD 324 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccC
Confidence 99999999999999999999999999999999988866555555556677788999999999999999999999999999
Q ss_pred hhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccH
Q 007255 444 AALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRN 523 (611)
Q Consensus 444 ~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~ 523 (611)
||++|+||+|+.|.||.|+.+.|.+|++++.+++.+.+++++++||+-+++|.|++.+++|-+|.+.|+++. +..++.
T Consensus 325 PALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~--atev~h 402 (424)
T KOG0652|consen 325 PALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG--ATEVTH 402 (424)
T ss_pred HHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc--cccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 677899
Q ss_pred HHHHHHHhhcC
Q 007255 524 RHFQTVKDSLK 534 (611)
Q Consensus 524 ~~~~~~l~~~~ 534 (611)
+||.+.+..++
T Consensus 403 eDfmegI~eVq 413 (424)
T KOG0652|consen 403 EDFMEGILEVQ 413 (424)
T ss_pred HHHHHHHHHHH
Confidence 99999886654
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-44 Score=337.18 Aligned_cols=249 Identities=37% Similarity=0.666 Sum_probs=234.3
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
.-|..+|.||+|++...+.+.+.++.|+.||+.+..+|+.||+|++|||+||||||.||+|+|+...+.|+.+-++++..
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCccc
Q 007255 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
+|.|+..+.++++|+.|...+|+|+||||||.+..+|=.++++....-.|..-+||+++||+...+.+-||++||+.+.+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999999986666665555566677899999999999999999999999999
Q ss_pred chhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccc
Q 007255 443 DAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVR 522 (611)
Q Consensus 443 d~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~ 522 (611)
||||.||||+|+.|.||.||...+..||+++..++.+..+++++.+....+.+||+||+++|.+|...|++++ ...++
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer--Rm~vt 415 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER--RMKVT 415 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH--Hhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 56789
Q ss_pred HHHHHHHHhhc
Q 007255 523 NRHFQTVKDSL 533 (611)
Q Consensus 523 ~~~~~~~l~~~ 533 (611)
.+||..+..++
T Consensus 416 ~~DF~ka~e~V 426 (440)
T KOG0726|consen 416 MEDFKKAKEKV 426 (440)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 18
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-44 Score=330.53 Aligned_cols=260 Identities=37% Similarity=0.641 Sum_probs=241.1
Q ss_pred cCCcccccccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc
Q 007255 272 VGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS 351 (611)
Q Consensus 272 i~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~ 351 (611)
+.|+.+.....+.|.++++|++|..+..+.+++.++.|+.||+.|-++|+.||+|+|+|||||||||.+|+|+|+..++.
T Consensus 159 idpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac 238 (435)
T KOG0729|consen 159 IDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC 238 (435)
T ss_pred CCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce
Confidence 44555555556789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeE
Q 007255 352 FFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGIL 431 (611)
Q Consensus 352 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 431 (611)
|+.+-++++..+|+|+....++.+|..|+....||||+||||.+.+.|-..+.+.+....+..-+|+++|||+.+.+++-
T Consensus 239 firvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnik 318 (435)
T KOG0729|consen 239 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK 318 (435)
T ss_pred EEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeE
Confidence 99999999999999999999999999999999999999999999998865555555556677788899999999999999
Q ss_pred EEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007255 432 VLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVA 511 (611)
Q Consensus 432 vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a 511 (611)
|+++||+|+.+||||+||||+|+.++|.+||.+.|.+|++++.+.+.+..++-++-||..|.+-||++|+.+|.+|.+.|
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfa 398 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 398 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccHHHHHHHHhhc
Q 007255 512 LREDISATAVRNRHFQTVKDSL 533 (611)
Q Consensus 512 ~~~~~~~~~i~~~~~~~~l~~~ 533 (611)
++.. .+..+..||..|..++
T Consensus 399 irar--rk~atekdfl~av~kv 418 (435)
T KOG0729|consen 399 IRAR--RKVATEKDFLDAVNKV 418 (435)
T ss_pred HHHH--hhhhhHHHHHHHHHHH
Confidence 8765 5677889999998765
No 19
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-43 Score=352.35 Aligned_cols=431 Identities=29% Similarity=0.443 Sum_probs=329.6
Q ss_pred ccCCcHHHHHHH-HHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-cEEEEcccccccccccch
Q 007255 20 AIGGNRAAVEAL-RELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-HLTVISPHSVHKAHVGES 97 (611)
Q Consensus 20 ~i~G~~~~~~~l-~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~-~~~~v~~~~~~~~~~~~~ 97 (611)
.|+|++.....+ +++...-+..|+...++|+++-+++|||||||||||.+||.+.+.++. +--.|+..++.+.|.|++
T Consensus 222 GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeS 301 (744)
T KOG0741|consen 222 GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGES 301 (744)
T ss_pred ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhccc
Confidence 468998876665 677777788889999999999999999999999999999999999975 456788999999999999
Q ss_pred HHHHHHHHHHHHhhhhc----CCCeEEEEccccccCCCCCC---CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 007255 98 EKALREAFSQASSHALS----GKPSVVFIDEIDALCPRRDH---RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (611)
Q Consensus 98 ~~~l~~~f~~~~~~~~~----~~~~il~IDeid~l~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn 170 (611)
+..++.+|..|...... ..-.||++||||.+|..+++ +......++++|+.-||+... ..++++|+.||
T Consensus 302 E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq----LNNILVIGMTN 377 (744)
T KOG0741|consen 302 EENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ----LNNILVIGMTN 377 (744)
T ss_pred HHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh----hhcEEEEeccC
Confidence 99999999998764432 22359999999999988753 234566899999999997543 34799999999
Q ss_pred CcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCC----CCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhh
Q 007255 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV----PLDANVDLEAIATSCNGYVGADLEALCREATMSAVK 246 (611)
Q Consensus 171 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~ 246 (611)
+.+.+|++|+|||||...+++..||+.-|.+|++.+.+.. .++.+++++++|..|..|+|.+|+.+++.|...|+.
T Consensus 378 R~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~n 457 (744)
T KOG0741|consen 378 RKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMN 457 (744)
T ss_pred chhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877654 367889999999999999999999999999999998
Q ss_pred hccccc-------ccccccchhHHHHHHHHhccCCccccccc-cc--C--CCccccccc--chhHHHHHHHHHhhccCCC
Q 007255 247 RSSDAN-------ECAGVLSVTMEDWRHARSVVGPSITRGVT-VE--I--PKVTWEDIG--GLRDLKKKLQQAVEWPIKH 312 (611)
Q Consensus 247 r~~~~~-------~~~~~~~v~~ed~~~a~~~i~~~~~~~~~-~~--~--~~~~~~~i~--g~~~~k~~l~~~~~~~~~~ 312 (611)
|+.... .....+.++++||..+...++|....... .. . --+.|..-+ ..++-+..+++
T Consensus 458 R~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~q-------- 529 (744)
T KOG0741|consen 458 RHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQ-------- 529 (744)
T ss_pred hhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHH--------
Confidence 875542 34456789999999999999887653211 00 0 001121110 01111111111
Q ss_pred hhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEee-cchhhccccccchHHHHHHHHHHHHhcCCcEEEEcc
Q 007255 313 STAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL-SGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDE 391 (611)
Q Consensus 313 ~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDe 391 (611)
.+.....+-.++||+||||+|||+||..+|...+.||+.+ ++.++.+..-...+..++.+|+.|+...-+||++|+
T Consensus 530 ---vk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDd 606 (744)
T KOG0741|consen 530 ---VKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDD 606 (744)
T ss_pred ---hhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcc
Confidence 1111234456799999999999999999999999999865 566665544444567899999999999989999999
Q ss_pred cccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCC-eEEEEecCCCccc-chhccCCCCccceeecCCCCH-HHHHH
Q 007255 392 ADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKG-ILVLAATNRPHAI-DAALMRPGRFDLVLYVPPPDL-EARHE 468 (611)
Q Consensus 392 id~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~~vI~~tn~~~~l-d~al~r~gRf~~~i~~~~p~~-~~r~~ 468 (611)
++.|..-.. -.-..++.++.+|+..+....+.++ .+|++||.+.+.+ +..++. .|+..+.+|..+. ++...
T Consensus 607 iErLiD~vp----IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~ 680 (744)
T KOG0741|consen 607 IERLLDYVP----IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLE 680 (744)
T ss_pred hhhhhcccc----cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHH
Confidence 999864321 1113457788888888887666654 5666666666555 334555 7888999986554 55555
Q ss_pred HHH
Q 007255 469 ILR 471 (611)
Q Consensus 469 il~ 471 (611)
++.
T Consensus 681 vl~ 683 (744)
T KOG0741|consen 681 VLE 683 (744)
T ss_pred HHH
Confidence 555
No 20
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-42 Score=365.88 Aligned_cols=247 Identities=43% Similarity=0.711 Sum_probs=230.7
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccc
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~ 363 (611)
...++|.|+.|.+++|+.|+|++.+ +++|+.|.++|...|+|+||+||||||||.||+|+|.|.+.||+.++++++...
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 3458999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCC-CCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCccc
Q 007255 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGG-SSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~-~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
++|....+++.+|..++...|||+||||||.+..+|++ ......+.....+|+||.+|||+...+.++|+++||+|+.+
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~l 463 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDIL 463 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcccc
Confidence 99999999999999999999999999999999999952 23344456678899999999999999999999999999999
Q ss_pred chhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Q 007255 443 DAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAV 521 (611)
Q Consensus 443 d~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i 521 (611)
|+|++||||||++|++++|+...|.+|++.++++.... +++++..+|..|.||||+||.++|++|+..|.++. ...|
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~--~~~i 541 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG--LREI 541 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc--cCcc
Confidence 99999999999999999999999999999999999885 77899999999999999999999999999998875 5678
Q ss_pred cHHHHHHHHhhc
Q 007255 522 RNRHFQTVKDSL 533 (611)
Q Consensus 522 ~~~~~~~~l~~~ 533 (611)
+..|+..|++++
T Consensus 542 ~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 542 GTKDLEYAIERV 553 (774)
T ss_pred chhhHHHHHHHH
Confidence 999999999854
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.5e-41 Score=349.34 Aligned_cols=251 Identities=37% Similarity=0.656 Sum_probs=233.1
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
..|.++|+||+|++.+++.+++.+.+|+.+++.|.++|+.+++++|||||||||||++|+++|++++.+++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCccc
Q 007255 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
+|.|+++..++.+|..++...|+||||||+|.+++++.....+......+.+.+|+..|+++....+++||+|||+|+.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999998875443333334567889999999998888899999999999999
Q ss_pred chhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccc
Q 007255 443 DAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVR 522 (611)
Q Consensus 443 d~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~ 522 (611)
|++++|||||+..|+|+.|+.++|..||+.++.+..+..++++..++..++||||+||.++|++|+..|+++. ...++
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~--~~~i~ 375 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN--RYVIL 375 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--CCccC
Confidence 9999999999999999999999999999999999999899999999999999999999999999999999885 45899
Q ss_pred HHHHHHHHhhcCC
Q 007255 523 NRHFQTVKDSLKP 535 (611)
Q Consensus 523 ~~~~~~~l~~~~~ 535 (611)
.+||..|+.++..
T Consensus 376 ~~df~~A~~~v~~ 388 (398)
T PTZ00454 376 PKDFEKGYKTVVR 388 (398)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987644
No 22
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-41 Score=350.69 Aligned_cols=257 Identities=39% Similarity=0.658 Sum_probs=237.7
Q ss_pred ccccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 4 KGRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 4 ~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
+..+++.+++.| +||+|++++|+.|++.+.+|+.+++.|.++|+.+|++||||||||||||++|+++|++.+.+|+.
T Consensus 422 Re~~ve~p~v~W---~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls 498 (693)
T KOG0730|consen 422 REILVEMPNVSW---DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS 498 (693)
T ss_pred hheeccCCCCCh---hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee
Confidence 345688999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCc
Q 007255 84 ISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPH 162 (611)
Q Consensus 84 v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 162 (611)
+.+.++.+.|.|++++.++++|+++.+.. |||+|+||||.+...+++ .+....+++++|++.||+..... +
T Consensus 499 vkgpEL~sk~vGeSEr~ir~iF~kAR~~a----P~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k----~ 570 (693)
T KOG0730|consen 499 VKGPELFSKYVGESERAIREVFRKARQVA----PCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK----N 570 (693)
T ss_pred ccCHHHHHHhcCchHHHHHHHHHHHhhcC----CeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC----c
Confidence 99999999999999999999999998765 999999999999998853 33457789999999999876543 6
Q ss_pred EEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHH
Q 007255 163 VVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATM 242 (611)
Q Consensus 163 v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~ 242 (611)
|+||++||+|+.||+++.|||||+..|++|+||.+.|.+|++.+.++.++.++++++.+++.|+||+|+||..+|++|+.
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~ 650 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAAL 650 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccccccchhHHHHHHHHhccCCccc
Q 007255 243 SAVKRSSDANECAGVLSVTMEDWRHARSVVGPSIT 277 (611)
Q Consensus 243 ~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~~~~ 277 (611)
.+++...+ ...+..++|.++.+...++..
T Consensus 651 ~a~~e~i~------a~~i~~~hf~~al~~~r~s~~ 679 (693)
T KOG0730|consen 651 LALRESIE------ATEITWQHFEEALKAVRPSLT 679 (693)
T ss_pred HHHHHhcc------cccccHHHHHHHHHhhcccCC
Confidence 99997765 456788899999888777653
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=5.3e-41 Score=309.86 Aligned_cols=241 Identities=29% Similarity=0.479 Sum_probs=214.1
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccc
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~ 363 (611)
.+..+++|++|++++|+..+-.+.+ +..|+.|.. ..|+++|||||||||||++|+|+|++.+.+++.+++.++.+.
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHH-hhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 4677899999999999987766654 677777654 568899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccc
Q 007255 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAID 443 (611)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld 443 (611)
|+|+....++.+|..|+..+|||+||||+|.|+-.|..++-. +...+++|+||.+|||+..+.+++.|++||+|+.||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelR--GDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD 268 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELR--GDVSEIVNALLTELDGIKENEGVVTIAATNRPELLD 268 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhc--ccHHHHHHHHHHhccCcccCCceEEEeecCChhhcC
Confidence 999999999999999999999999999999998777554432 223578999999999999999999999999999999
Q ss_pred hhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHH-HHHHHHHHHHHHhhccccccc
Q 007255 444 AALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELE-GLCREAGIVALREDISATAVR 522 (611)
Q Consensus 444 ~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~-~~~~~a~~~a~~~~~~~~~i~ 522 (611)
+|+++ ||...|.|.+|+.++|..|++.+.+++++.-+.++..+++.+.|+||+||. .+++.|+..|+.+. ...++
T Consensus 269 ~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed--~e~v~ 344 (368)
T COG1223 269 PAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED--REKVE 344 (368)
T ss_pred HHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc--hhhhh
Confidence 99999 999999999999999999999999999999999999999999999999995 45566677777664 55688
Q ss_pred HHHHHHHHhhcC
Q 007255 523 NRHFQTVKDSLK 534 (611)
Q Consensus 523 ~~~~~~~l~~~~ 534 (611)
..|+..|+.+..
T Consensus 345 ~edie~al~k~r 356 (368)
T COG1223 345 REDIEKALKKER 356 (368)
T ss_pred HHHHHHHHHhhc
Confidence 888888887543
No 24
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-41 Score=325.79 Aligned_cols=230 Identities=39% Similarity=0.609 Sum_probs=214.4
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcC-CCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLG-ISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~-~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~ 363 (611)
-.++|+||+|++.+++++++.+..|+.+++.|.+.+ .++++|+|||||||||||++|+|+|++.+++|+.++++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 457899999999999999999999999999997544 4688999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCC--eEEEEecCCCcc
Q 007255 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKG--ILVLAATNRPHA 441 (611)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~~vI~~tn~~~~ 441 (611)
|.|++++.++.+|..|...+|+||||||+|.+.+.|. +........++++|....||+...++ ++|+||||+|.+
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~D 243 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFD 243 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCcc
Confidence 9999999999999999999999999999999998883 33446677899999999999976655 999999999999
Q ss_pred cchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccc
Q 007255 442 IDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISAT 519 (611)
Q Consensus 442 ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~ 519 (611)
+|.|++| |+...++++.|+..+|.+|++..+++.++.+++|+..+|..|+||||.||+.+|+.|+...+++.+...
T Consensus 244 lDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 244 LDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred HHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999998876554
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.2e-39 Score=340.46 Aligned_cols=255 Identities=45% Similarity=0.740 Sum_probs=234.9
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~ 361 (611)
...|.++|++|+|+++.++.+.+.+..|+.+++.|..+|..+++++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcc
Q 007255 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHA 441 (611)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 441 (611)
.+|.|+++..++.+|..++...|+||||||+|.++++++...........+.+.+++..++++...+++.||+|||+++.
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI 282 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999999887654433333445677888899998888889999999999999
Q ss_pred cchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Q 007255 442 IDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAV 521 (611)
Q Consensus 442 ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i 521 (611)
+|++++|||||+..|+||+|+.++|.+||+.++++..+..++++..+|..++|||++||+.+|++|+..|+++. ...+
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~--~~~i 360 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD--RTEV 360 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--CCCc
Confidence 99999999999999999999999999999999999998888999999999999999999999999999998874 5679
Q ss_pred cHHHHHHHHhhcCCCCC
Q 007255 522 RNRHFQTVKDSLKPALT 538 (611)
Q Consensus 522 ~~~~~~~~l~~~~~~~~ 538 (611)
+.+||..|+.++++...
T Consensus 361 ~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 361 TMEDFLKAIEKVMGKEE 377 (389)
T ss_pred CHHHHHHHHHHHhcccc
Confidence 99999999999887543
No 26
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-40 Score=348.44 Aligned_cols=247 Identities=41% Similarity=0.700 Sum_probs=236.2
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccc
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~ 363 (611)
...++|.|+.|.+++|+.+.+.+.. ++.|..|.++|...|+|+||+||||||||.+|+|+|.+.+.||++++++++...
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 4578999999999999999999986 999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccc
Q 007255 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAID 443 (611)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld 443 (611)
|+|-....++.+|..++..+|||+||||+|.+...|+...++..+...+.+++||.+||++..+..+++|++||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999987766677777889999999999999889999999999999999
Q ss_pred hhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccH
Q 007255 444 AALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRN 523 (611)
Q Consensus 444 ~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~ 523 (611)
+||+||||||+.|.++.||...|.+|++.+.++.++..++++..+|+.|.||+|+|+.+++++|+..|.++. ...++.
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n--~~~i~~ 380 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN--KKEITM 380 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc--CeeEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999998886 778999
Q ss_pred HHHHHHHhhc
Q 007255 524 RHFQTVKDSL 533 (611)
Q Consensus 524 ~~~~~~l~~~ 533 (611)
.||..+..++
T Consensus 381 ~~i~ea~drv 390 (596)
T COG0465 381 RDIEEAIDRV 390 (596)
T ss_pred cchHHHHHHH
Confidence 9999999887
No 27
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=3.9e-39 Score=335.57 Aligned_cols=249 Identities=37% Similarity=0.681 Sum_probs=230.4
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
..|..+|+||+|++..++.+.+++..|+.+++.|..+|+.+++++|||||||||||++|+++|++++.+|+.+..+++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCccc
Q 007255 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
+|.|+.+..++.+|..++...|+||||||+|.++.++....++......+.+.+|+..|+++....++.||+|||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999999999999999999999999999999998876544333334456778899999998888899999999999999
Q ss_pred chhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccc
Q 007255 443 DAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVR 522 (611)
Q Consensus 443 d~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~ 522 (611)
|++++|||||+..|+|+.||.++|.+||+.+++++.+..+++++.++..++|||++||..+|.+|+..|+++. ...|+
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~--r~~Vt 413 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER--RMKVT 413 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc--CCccC
Confidence 9999999999999999999999999999999999999889999999999999999999999999999999875 55799
Q ss_pred HHHHHHHHhhc
Q 007255 523 NRHFQTVKDSL 533 (611)
Q Consensus 523 ~~~~~~~l~~~ 533 (611)
.+||..|+.++
T Consensus 414 ~~D~~~A~~~v 424 (438)
T PTZ00361 414 QADFRKAKEKV 424 (438)
T ss_pred HHHHHHHHHHH
Confidence 99999999775
No 28
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-39 Score=329.23 Aligned_cols=265 Identities=38% Similarity=0.607 Sum_probs=239.1
Q ss_pred cccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhh
Q 007255 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (611)
Q Consensus 281 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~ 360 (611)
....+.+.|+++.|++.+|+.+.+++.+|+..+..|..+. .+++++||.||||+|||+|++|+|.|.++.|+.++++++
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 3345678999999999999999999999999999998654 567899999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--CCCCeEEEEecCC
Q 007255 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--QAKGILVLAATNR 438 (611)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~~vI~~tn~ 438 (611)
.++|+|++++.++.+|+.|+..+|+|+||||+|.++.+|. .......++++.++|.++++.. +.++++||||||+
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs---~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS---DNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcC---CcccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 9999999999999999999999999999999999999983 3444667899999999988764 5668999999999
Q ss_pred CcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCC-CCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 007255 439 PHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMK-VGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDIS 517 (611)
Q Consensus 439 ~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~ 517 (611)
||++|.+++| ||.+.+++|+|++++|..+|+..+.+.+ ...+.+++.+++.|+|||++||.++|++|++..++....
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 9999999999999999999998887763 335678999999999999999999999999877766543
Q ss_pred -----------cccccHHHHHHHHhhcCCCCCHHHHHHHHHHhhc
Q 007255 518 -----------ATAVRNRHFQTVKDSLKPALTKEEIDSYSSFMKS 551 (611)
Q Consensus 518 -----------~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 551 (611)
.++++..||..++..++|.++.+..+.|.+|...
T Consensus 378 ~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~ 422 (428)
T KOG0740|consen 378 TTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKE 422 (428)
T ss_pred chhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhh
Confidence 3578999999999999999999999999999764
No 29
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-38 Score=307.07 Aligned_cols=263 Identities=37% Similarity=0.571 Sum_probs=233.1
Q ss_pred cccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 5 GRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 5 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
-++.+-++++| +||.|++++|+-|++++..|+..|+.|.-+- +|=+++|++||||||||+||+++|.+++..|+.|
T Consensus 201 dIl~~np~ikW---~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 201 DILQRNPNIKW---DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred HHhccCCCcCh---HhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 35677889999 8999999999999999999999999987432 2339999999999999999999999999999999
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCC--chhhHHHHHHHHHHHhcCCCCCCCCCc
Q 007255 85 SPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR--REQDVRIASQLFTLMDSNKPSKTSVPH 162 (611)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~~ 162 (611)
+.+++.+.|.|++++.++-+|+.+.-++ |++|||||||.|+..+++. .+.+.++-+.|+-.||+..........
T Consensus 277 SsstltSKwRGeSEKlvRlLFemARfyA----PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~ 352 (491)
T KOG0738|consen 277 SSSTLTSKWRGESEKLVRLLFEMARFYA----PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKV 352 (491)
T ss_pred chhhhhhhhccchHHHHHHHHHHHHHhC----CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccccccee
Confidence 9999999999999999999999999886 9999999999999988644 456778999999999987655444345
Q ss_pred EEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHH
Q 007255 163 VVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATM 242 (611)
Q Consensus 163 v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~ 242 (611)
|+|.++||.|++||++++| ||...|++|.|+.+.|..+++..++.....++.+++.++..++||+|.||.++|++|.+
T Consensus 353 VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm 430 (491)
T KOG0738|consen 353 VMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASM 430 (491)
T ss_pred EEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 8999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccc---------ccccccchhHHHHHHHHhccCCccc
Q 007255 243 SAVKRSSDAN---------ECAGVLSVTMEDWRHARSVVGPSIT 277 (611)
Q Consensus 243 ~a~~r~~~~~---------~~~~~~~v~~ed~~~a~~~i~~~~~ 277 (611)
.+++|...-. .......++.+||..|+..+.|+..
T Consensus 431 ~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 431 MAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 9999764321 1111256889999999999988765
No 30
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=319.89 Aligned_cols=262 Identities=36% Similarity=0.620 Sum_probs=228.4
Q ss_pred CCCccccc--ccchh-HHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCC-cEEeecchh
Q 007255 284 IPKVTWED--IGGLR-DLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA-SFFSLSGAE 359 (611)
Q Consensus 284 ~~~~~~~~--i~g~~-~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~-~~~~~~~~~ 359 (611)
.|...|++ |+|++ +.-+..++++..-+-.|+..+++|+...+|+|||||||||||.+|+.+...+++ +--.+++++
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 35556665 56775 445566788888788899999999999999999999999999999999999975 456789999
Q ss_pred hccccccchHHHHHHHHHHHHhcC----C----cEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeE
Q 007255 360 LYSMYVGESEALLRNTFQRARLAA----P----SIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGIL 431 (611)
Q Consensus 360 ~~~~~~g~~~~~~~~~~~~a~~~~----p----~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 431 (611)
++++|+|++|++++++|..|.... + -||++||||.++..||+.+++ ...++.++|+||.-|||++.-.+++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~-TGVhD~VVNQLLsKmDGVeqLNNIL 371 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS-TGVHDTVVNQLLSKMDGVEQLNNIL 371 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC-CCccHHHHHHHHHhcccHHhhhcEE
Confidence 999999999999999999986432 1 299999999999999876654 4678999999999999999999999
Q ss_pred EEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCC----CCCcccHHHHHHhCCCCCHHHHHHHHHHH
Q 007255 432 VLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMK----VGDDVDLRSIAEETELFTGAELEGLCREA 507 (611)
Q Consensus 432 vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~----~~~~~~~~~la~~~~g~s~~~i~~~~~~a 507 (611)
|||.||+.+.||.||+|||||+..+++.+||+..|.||++++++++. +..++|+.+||..|.+|||++|+.+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987764 45789999999999999999999999999
Q ss_pred HHHHHHhhccc-------------ccccHHHHHHHHhhcCCCC--CHHHHHHHH
Q 007255 508 GIVALREDISA-------------TAVRNRHFQTVKDSLKPAL--TKEEIDSYS 546 (611)
Q Consensus 508 ~~~a~~~~~~~-------------~~i~~~~~~~~l~~~~~~~--~~~~~~~~~ 546 (611)
...|+.|++.. -.++.+||..||..++|+. ++++++.+.
T Consensus 452 ~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 99999998743 2588999999999999985 555544443
No 31
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.7e-37 Score=334.14 Aligned_cols=250 Identities=42% Similarity=0.716 Sum_probs=228.5
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~ 361 (611)
...|.++|+|++|++++++.+.+.+.+ +.+++.+.+.|..+++|+|||||||||||++|+++|.+++.+++.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 345788999999999999999998876 8899999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcc
Q 007255 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHA 441 (611)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 441 (611)
+.+.|.++..++.+|..++...|+||||||+|.+..+++...+.......+.+++||.+||++...++++||+|||+|+.
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDV 205 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhh
Confidence 99999999999999999999999999999999999887653333334456889999999999988889999999999999
Q ss_pred cchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Q 007255 442 IDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAV 521 (611)
Q Consensus 442 ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i 521 (611)
+|++++||||||..|+++.|+.++|.+||+.++++.+...++++..+|..+.|||++||.++|++|...+.++. .+++
T Consensus 206 ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~--~~~i 283 (495)
T TIGR01241 206 LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN--KTEI 283 (495)
T ss_pred cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--CCCC
Confidence 99999999999999999999999999999999998887788899999999999999999999999988877653 5679
Q ss_pred cHHHHHHHHhhcC
Q 007255 522 RNRHFQTVKDSLK 534 (611)
Q Consensus 522 ~~~~~~~~l~~~~ 534 (611)
+.+|+..++.+..
T Consensus 284 ~~~~l~~a~~~~~ 296 (495)
T TIGR01241 284 TMNDIEEAIDRVI 296 (495)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998763
No 32
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-38 Score=300.20 Aligned_cols=247 Identities=35% Similarity=0.634 Sum_probs=226.1
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcccc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~ 364 (611)
..++|+.++|.-++...+++.++.|+..++.|.++|+.+|.+++||||||+|||.+|+++|..++++|+.+.++.+.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccch
Q 007255 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDA 444 (611)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~ 444 (611)
.|++...++..|..|+...|||+|+||||.+.+.+..........-.+.+-.|+++|+++...+++-+|+|||+|+.|||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 99999999999999999999999999999999998555544445556667788899999999999999999999999999
Q ss_pred hccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHH
Q 007255 445 ALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNR 524 (611)
Q Consensus 445 al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~ 524 (611)
||+||||+|+.+.+|+|+...|..|++.+.+.+......+.+.+.+..+||.++|+++.|.+|...+..+. ...+-.+
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~--~~~vl~E 364 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE--RDEVLHE 364 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh--hHHHhHH
Confidence 99999999999999999999999999999998888888999999999999999999999999998887664 3345566
Q ss_pred HHHHHHhhc
Q 007255 525 HFQTVKDSL 533 (611)
Q Consensus 525 ~~~~~l~~~ 533 (611)
+|..+..+.
T Consensus 365 d~~k~vrk~ 373 (388)
T KOG0651|consen 365 DFMKLVRKQ 373 (388)
T ss_pred HHHHHHHHH
Confidence 777777554
No 33
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-37 Score=319.86 Aligned_cols=259 Identities=38% Similarity=0.612 Sum_probs=231.5
Q ss_pred cccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccc
Q 007255 9 SEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS 88 (611)
Q Consensus 9 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~ 88 (611)
..+|+.| +||+|++++|+.|.+.+..|+.+++.+.. |.++..+||||||||||||.+|+++|.++..+|+.|...+
T Consensus 665 KIPnV~W---dDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPE 740 (953)
T KOG0736|consen 665 KIPNVSW---DDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPE 740 (953)
T ss_pred CCCccch---hcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHH
Confidence 3689999 99999999999999999999999999875 8888899999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCc---hhhHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 007255 89 VHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR---EQDVRIASQLFTLMDSNKPSKTSVPHVVV 165 (611)
Q Consensus 89 ~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~~~v~i 165 (611)
+.+.|.|+++++++++|+.|... .|||||+||+|.++|.++..+ ....+++++|+..||..... ....|+|
T Consensus 741 LLNMYVGqSE~NVR~VFerAR~A----~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~--~s~~VFV 814 (953)
T KOG0736|consen 741 LLNMYVGQSEENVREVFERARSA----APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS--SSQDVFV 814 (953)
T ss_pred HHHHHhcchHHHHHHHHHHhhcc----CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC--CCCceEE
Confidence 99999999999999999999866 499999999999999886332 33458999999999987653 2336999
Q ss_pred EEeecCcccccHHhhccCCcceEEEccCC-CHHHHHHHHHHhhcCCCCCCcccHHHHHHhcc-CCccccHHHHHHHHHHH
Q 007255 166 VASTNRVDAIDPALRRSGRFDAEVEVTVP-TAEERFEILKLYTKKVPLDANVDLEAIATSCN-GYVGADLEALCREATMS 243 (611)
Q Consensus 166 i~ttn~~~~l~~~l~~~~Rf~~~i~~~~p-~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~-g~~~~dl~~l~~~a~~~ 243 (611)
|++||+|+.+||+|.|||||+..+++.++ |.+.+..+++...+++.++.++++.++|+.|. .|+|.|+-.+|..|+..
T Consensus 815 iGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~ 894 (953)
T KOG0736|consen 815 IGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLA 894 (953)
T ss_pred EecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999888 77788999999999999999999999999985 58999999999999999
Q ss_pred Hhhhcccc---------cccccccchhHHHHHHHHhccCCccc
Q 007255 244 AVKRSSDA---------NECAGVLSVTMEDWRHARSVVGPSIT 277 (611)
Q Consensus 244 a~~r~~~~---------~~~~~~~~v~~ed~~~a~~~i~~~~~ 277 (611)
|++|..+. +.....+.++++||.++.+++.|+..
T Consensus 895 AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 895 AIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred HHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 99986543 22334567899999999999988764
No 34
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=3.4e-36 Score=313.71 Aligned_cols=249 Identities=47% Similarity=0.783 Sum_probs=227.4
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
..|.++|++++|++..++.+.+.+..|+.+++.+..+|..+++++|||||||||||++|+++|++++.+++.+..+++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCccc
Q 007255 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
+|.|.....++.+|..++...|+||||||+|.+..++............+.+.+++..++++...+++.||+|||+++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 99999999999999999999999999999999987765443333333456778888889888777889999999999999
Q ss_pred chhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccc
Q 007255 443 DAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVR 522 (611)
Q Consensus 443 d~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~ 522 (611)
|++++|||||+..|+|+.|+.++|.+||+.++.+.....++++..++..++|||++||..+|++|+..|+++. ...|+
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~--~~~i~ 352 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE--RDYVT 352 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCccC
Confidence 9999999999999999999999999999999998888888999999999999999999999999999998874 56799
Q ss_pred HHHHHHHHhhc
Q 007255 523 NRHFQTVKDSL 533 (611)
Q Consensus 523 ~~~~~~~l~~~ 533 (611)
.+||..|++++
T Consensus 353 ~~d~~~a~~~~ 363 (364)
T TIGR01242 353 MDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 35
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4.6e-36 Score=316.29 Aligned_cols=249 Identities=34% Similarity=0.624 Sum_probs=213.5
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc----------
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS---------- 351 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~---------- 351 (611)
...|.++|++|+|++..++.+++.+..|+.+++.|.++|+.+++++|||||||||||++|+++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 3457899999999999999999999999999999999999999999999999999999999999998543
Q ss_pred EEeecchhhccccccchHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCC
Q 007255 352 FFSLSGAELYSMYVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQA 427 (611)
Q Consensus 352 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 427 (611)
|+.++.+++.++|.|+++..++.+|..++.. .|+||||||+|.++++|+...+ .+...+++++||..||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s--~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS--SDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc--chHHHHHHHHHHHHhcccccC
Confidence 6678888999999999999999999998764 6999999999999988764322 234578899999999999888
Q ss_pred CCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcC-CCCC---------CcccHHHHHHh------
Q 007255 428 KGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRN-MKVG---------DDVDLRSIAEE------ 491 (611)
Q Consensus 428 ~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~-~~~~---------~~~~~~~la~~------ 491 (611)
++++||+|||+++.||+|++||||||.+|+|++|+.++|.+||+.++.. ++.. ...++..+++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999988754 3331 11222333222
Q ss_pred -----------------------CCCCCHHHHHHHHHHHHHHHHHhhcc--cccccHHHHHHHHhh
Q 007255 492 -----------------------TELFTGAELEGLCREAGIVALREDIS--ATAVRNRHFQTVKDS 532 (611)
Q Consensus 492 -----------------------~~g~s~~~i~~~~~~a~~~a~~~~~~--~~~i~~~~~~~~l~~ 532 (611)
++.+||+.|.++|..|...|+++.+. ...++.+|+..++..
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLD 477 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHH
Confidence 56789999999999999999988763 357889999998854
No 36
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-36 Score=302.53 Aligned_cols=244 Identities=37% Similarity=0.567 Sum_probs=221.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~ 95 (611)
.+|+|+-|.+++|++|++++.+ +..|..+.++|-+.|++|||+||||||||.|||++|.+.+.+|++.+.+++...+.|
T Consensus 301 v~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred cccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence 4689999999999999999877 889999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCch-hhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccc
Q 007255 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRRE-QDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA 174 (611)
Q Consensus 96 ~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~ 174 (611)
.-.++++++|..++..+ ||||||||||.+...+..... .....+++|+..||++.... .|+||++||.|+.
T Consensus 380 vGArRVRdLF~aAk~~A----PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNe----GiIvigATNfpe~ 451 (752)
T KOG0734|consen 380 VGARRVRDLFAAAKARA----PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNE----GIIVIGATNFPEA 451 (752)
T ss_pred ccHHHHHHHHHHHHhcC----CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCC----ceEEEeccCChhh
Confidence 99999999999998765 999999999999988865433 66788899999999977543 6999999999999
Q ss_pred ccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhccccccc
Q 007255 175 IDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANEC 254 (611)
Q Consensus 175 l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~ 254 (611)
+|++|.|||||+.++.+|.||..-|.+|++.++.+...+.++|+.-+|.-|.||+|.||+++++.|+..+....
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg------ 525 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG------ 525 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876533
Q ss_pred ccccchhHHHHHHHHhccCCcc
Q 007255 255 AGVLSVTMEDWRHARSVVGPSI 276 (611)
Q Consensus 255 ~~~~~v~~ed~~~a~~~i~~~~ 276 (611)
...+++.++..+..++-...
T Consensus 526 --a~~VtM~~LE~akDrIlMG~ 545 (752)
T KOG0734|consen 526 --AEMVTMKHLEFAKDRILMGP 545 (752)
T ss_pred --cccccHHHHhhhhhheeecc
Confidence 23588888888877664433
No 37
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=9.1e-36 Score=324.68 Aligned_cols=246 Identities=42% Similarity=0.692 Sum_probs=225.4
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcccc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~ 364 (611)
+.++|+|++|++++++.+.+.+.. ++.+..+..+|...++++||+||||||||++|+++|.+++.+++.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 467899999999999999998775 7889999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccch
Q 007255 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDA 444 (611)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~ 444 (611)
.|.....++.+|..++...||||||||+|.+...|+...+.......+.+++||.+||++....+++||++||+|+.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 99888899999999999999999999999999887654444445567889999999999888889999999999999999
Q ss_pred hccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHH
Q 007255 445 ALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNR 524 (611)
Q Consensus 445 al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~ 524 (611)
+++||||||..|.+++|+.++|.+||+.++++.....++++..+|..+.|||++||+++|++|+..+.++. ...++..
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~--~~~It~~ 414 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK--KATITMK 414 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC--CCCcCHH
Confidence 99999999999999999999999999999998777788999999999999999999999999988877664 4679999
Q ss_pred HHHHHHhhc
Q 007255 525 HFQTVKDSL 533 (611)
Q Consensus 525 ~~~~~l~~~ 533 (611)
|+..++.++
T Consensus 415 dl~~Ai~rv 423 (638)
T CHL00176 415 EIDTAIDRV 423 (638)
T ss_pred HHHHHHHHH
Confidence 999999876
No 38
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-35 Score=271.27 Aligned_cols=252 Identities=34% Similarity=0.597 Sum_probs=218.6
Q ss_pred cccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 5 GRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 5 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
+++.+.+...+ ++|+|++.+++.|.+++..|+.+.+.+..+|+.+|+++|+|||||||||.+++++|.+.+..|..+
T Consensus 160 MevDekPtE~Y---sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL 236 (424)
T KOG0652|consen 160 MEVDEKPTEQY---SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKL 236 (424)
T ss_pred eeeccCCcccc---cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHh
Confidence 44555555555 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCC-CCCchhhHHHHHHHHHHHhcCCCCCCCCCcE
Q 007255 85 SPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR-DHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (611)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v 163 (611)
-..++...+.|+-.+.+++.|.-++... |+|+||||+|.+...+ ++....+.+++..++.++..... +.+...|
T Consensus 237 AgPQLVQMfIGdGAkLVRDAFaLAKEka----P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG-Fss~~~v 311 (424)
T KOG0652|consen 237 AGPQLVQMFIGDGAKLVRDAFALAKEKA----PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG-FSSDDRV 311 (424)
T ss_pred cchHHHhhhhcchHHHHHHHHHHhhccC----CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC-CCCccce
Confidence 9999999999999999999999887654 9999999999998765 34444456667666555543322 1133468
Q ss_pred EEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHH
Q 007255 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMS 243 (611)
Q Consensus 164 ~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~ 243 (611)
-+|++||+.+-+||++.|+||.++.|+||.|+.+.|.+|++.+.++.....++++++++..|++|+|.....+|-+|...
T Consensus 312 KviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMi 391 (424)
T KOG0652|consen 312 KVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMI 391 (424)
T ss_pred EEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccccccccchhHHHHHHHHhcc
Q 007255 244 AVKRSSDANECAGVLSVTMEDWRHARSVV 272 (611)
Q Consensus 244 a~~r~~~~~~~~~~~~v~~ed~~~a~~~i 272 (611)
++++... .++.+||......+
T Consensus 392 ALRr~at--------ev~heDfmegI~eV 412 (424)
T KOG0652|consen 392 ALRRGAT--------EVTHEDFMEGILEV 412 (424)
T ss_pred HHhcccc--------cccHHHHHHHHHHH
Confidence 9997643 57788887765443
No 39
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2.4e-33 Score=315.77 Aligned_cols=440 Identities=22% Similarity=0.289 Sum_probs=300.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~ 85 (611)
..+++++|+++.+..+.+.+.. +..++++|+||||||||++++.+|+.+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 4678999999999988776633 245789999999999999999999987 67788888
Q ss_pred ccccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcE
Q 007255 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (611)
Q Consensus 86 ~~~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v 163 (611)
.+.+. ..+.|+.+..++.+|+.+... .++||||||+|.+++.+.... ......+.|...+.. +.+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~----~~~ILfiDEih~l~~~g~~~~-~~~~~~~~L~~~l~~--------g~i 312 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKE----PNAILFIDEIHTIVGAGATSG-GSMDASNLLKPALSS--------GKL 312 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhcc----CCeEEEEecHHHHhccCCCCC-ccHHHHHHHHHHHhC--------CCe
Confidence 88776 467889999999999987643 388999999999987653211 122344555555543 358
Q ss_pred EEEEeecCcc-----cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCC----CCC-CcccHHHHHHhccCCccc--
Q 007255 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV----PLD-ANVDLEAIATSCNGYVGA-- 231 (611)
Q Consensus 164 ~ii~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~~~~~la~~~~g~~~~-- 231 (611)
.+|++||..+ ..|+++.| ||. .|.++.|+.+++.+|++.....+ ... .+..+..++..+..|.+.
T Consensus 313 ~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~ 389 (731)
T TIGR02639 313 RCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRF 389 (731)
T ss_pred EEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccccc
Confidence 8999998743 57999999 996 79999999999999999765432 111 233477778877777543
Q ss_pred ---cHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhccCCccccccc-------ccCCCcccccccchhHHHHH
Q 007255 232 ---DLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSITRGVT-------VEIPKVTWEDIGGLRDLKKK 301 (611)
Q Consensus 232 ---dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~~~~~~~~-------~~~~~~~~~~i~g~~~~k~~ 301 (611)
-...++++|+....-+.. ......++.+|+................ ......--..|+||+.+++.
T Consensus 390 ~P~kai~lld~a~a~~~~~~~----~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~ 465 (731)
T TIGR02639 390 LPDKAIDVIDEAGASFRLRPK----AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDS 465 (731)
T ss_pred CCHHHHHHHHHhhhhhhcCcc----cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHH
Confidence 224556665543211110 0112347777777776654211100000 00111123457899999888
Q ss_pred HHHHhhccCCChhHHhhcCC----CCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccc------------cc
Q 007255 302 LQQAVEWPIKHSTAFSRLGI----SPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM------------YV 365 (611)
Q Consensus 302 l~~~~~~~~~~~~~~~~~~~----~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~------------~~ 365 (611)
+.+.+... +.|+ +|..++||+||||||||++|+++|..++.+++.++++++..+ |+
T Consensus 466 l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyv 537 (731)
T TIGR02639 466 LVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYV 537 (731)
T ss_pred HHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCc
Confidence 88877631 2232 244468999999999999999999999999999998876442 33
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC---------CCCCeEEEEec
Q 007255 366 GESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE---------QAKGILVLAAT 436 (611)
Q Consensus 366 g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~~t 436 (611)
|..+ ...+.+.++..+.+|++|||+|.+ +..+.+.|++.||... .-.+++||+||
T Consensus 538 g~~~--~~~l~~~~~~~p~~VvllDEieka--------------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Ts 601 (731)
T TIGR02639 538 GFEQ--GGLLTEAVRKHPHCVLLLDEIEKA--------------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTS 601 (731)
T ss_pred ccch--hhHHHHHHHhCCCeEEEEechhhc--------------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECC
Confidence 3222 223444556667789999999976 3567889999988531 12357899999
Q ss_pred CCCc-------------------------ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCC---------CCC-C
Q 007255 437 NRPH-------------------------AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNM---------KVG-D 481 (611)
Q Consensus 437 n~~~-------------------------~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~---------~~~-~ 481 (611)
|... .+.|.|+. |+|.+|.|.+.+.++..+|++..+... .+. +
T Consensus 602 n~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~ 679 (731)
T TIGR02639 602 NAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELT 679 (731)
T ss_pred CcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeC
Confidence 8642 13455665 999999999999999999998765432 111 2
Q ss_pred cccHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHh
Q 007255 482 DVDLRSIAEE--TELFTGAELEGLCREAGIVALRE 514 (611)
Q Consensus 482 ~~~~~~la~~--~~g~s~~~i~~~~~~a~~~a~~~ 514 (611)
+..++.|+.. ...|..+.++.+++......+-+
T Consensus 680 ~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 680 DDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred HHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 2335566664 23455677777777655555433
No 40
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-34 Score=264.73 Aligned_cols=238 Identities=35% Similarity=0.595 Sum_probs=212.0
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccch
Q 007255 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGES 97 (611)
Q Consensus 18 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~ 97 (611)
..+|+|++-+|+.++++++.|+...+.+++.|+.||+++|+|||||||||++++++|+.....|+.+..+++...|.|+-
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgeg 233 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEG 233 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCC-CCCchhhHHHHH---HHHHHHhcCCCCCCCCCcEEEEEeecCcc
Q 007255 98 EKALREAFSQASSHALSGKPSVVFIDEIDALCPRR-DHRREQDVRIAS---QLFTLMDSNKPSKTSVPHVVVVASTNRVD 173 (611)
Q Consensus 98 ~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~-~~~~~~~~~~~~---~ll~~l~~~~~~~~~~~~v~ii~ttn~~~ 173 (611)
.+.++++|.-++... |+|+||||+|.++..+ +.....+.+++. .|++.||++.... +|-+|.+||+.+
T Consensus 234 prmvrdvfrlakena----psiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~----nvkvimatnrad 305 (408)
T KOG0727|consen 234 PRMVRDVFRLAKENA----PSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT----NVKVIMATNRAD 305 (408)
T ss_pred cHHHHHHHHHHhccC----CcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc----ceEEEEecCccc
Confidence 999999999988654 9999999999998654 443444444444 5566667665433 689999999999
Q ss_pred cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccc
Q 007255 174 AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANE 253 (611)
Q Consensus 174 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~ 253 (611)
.+||+++|+||.++.|+||.|+..+++-+|.....+..+..+++++.+..+.+..+|.+|..+|++|...+++...
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr---- 381 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR---- 381 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988543
Q ss_pred cccccchhHHHHHHHHhc
Q 007255 254 CAGVLSVTMEDWRHARSV 271 (611)
Q Consensus 254 ~~~~~~v~~ed~~~a~~~ 271 (611)
-.+...||.++...
T Consensus 382 ----yvvl~kd~e~ay~~ 395 (408)
T KOG0727|consen 382 ----YVVLQKDFEKAYKT 395 (408)
T ss_pred ----eeeeHHHHHHHHHh
Confidence 24667788877654
No 41
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-35 Score=276.32 Aligned_cols=234 Identities=33% Similarity=0.561 Sum_probs=208.0
Q ss_pred ccccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 4 KGRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 4 ~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
.+++++.+|+.| +++.|++.+|+.|++++..|+.+|+.+.- +..|-++|||+||||||||+||+++|.+.+..|+.
T Consensus 121 sAIv~EKPNVkW---sDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFS 196 (439)
T KOG0739|consen 121 SAIVREKPNVKW---SDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFS 196 (439)
T ss_pred hhhhccCCCCch---hhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEE
Confidence 368999999999 88999999999999999999999998863 22344899999999999999999999999999999
Q ss_pred EcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCc
Q 007255 84 ISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPH 162 (611)
Q Consensus 84 v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 162 (611)
|+.+++.+.|.|++++.++.+|+.+... +|+||||||||.++..+. +.++...++-..++-.|.+.... ...
T Consensus 197 vSSSDLvSKWmGESEkLVknLFemARe~----kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d---~~g 269 (439)
T KOG0739|consen 197 VSSSDLVSKWMGESEKLVKNLFEMAREN----KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND---NDG 269 (439)
T ss_pred eehHHHHHHHhccHHHHHHHHHHHHHhc----CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccC---CCc
Confidence 9999999999999999999999999866 599999999999998875 44566677888888888864432 336
Q ss_pred EEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHH
Q 007255 163 VVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREAT 241 (611)
Q Consensus 163 v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~ 241 (611)
|+|.++||-|+.+|.+++| ||...|++|.|....|..+|+.++...+.. ...++.+++..|+||+|.||..+++.|.
T Consensus 270 vLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred eEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhh
Confidence 9999999999999999999 999999999999999999999998877644 4458999999999999999999999999
Q ss_pred HHHhhhccc
Q 007255 242 MSAVKRSSD 250 (611)
Q Consensus 242 ~~a~~r~~~ 250 (611)
...+++.+.
T Consensus 348 mePvRkvqs 356 (439)
T KOG0739|consen 348 MEPVRKVQS 356 (439)
T ss_pred hhhHHHhhh
Confidence 888887654
No 42
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-34 Score=317.07 Aligned_cols=249 Identities=41% Similarity=0.675 Sum_probs=223.9
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-----CCcEEeecchh
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAE 359 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~~~~ 359 (611)
..++|++|+|++.++.+|++.+..|+.+++.|.++++.||+|+||+||||||||.+|+++|..+ ...|+.-++++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 4578999999999999999999999999999999999999999999999999999999999888 56788889999
Q ss_pred hccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 007255 360 LYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRP 439 (611)
Q Consensus 360 ~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 439 (611)
..++|+|+.+..++.+|+.|+..+|+|+|+||||.+++.|+.+ ....+..+++.||..|||+...+.++||||||+|
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~SIvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHASIVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch---HHHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence 9999999999999999999999999999999999999988543 3455778999999999999999999999999999
Q ss_pred cccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccc
Q 007255 440 HAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDISA 518 (611)
Q Consensus 440 ~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~ 518 (611)
+.+|||++||||||+.++||+|+.+.|.+|+.++.++.... ...-+..+|+.+.||.|+||+.+|.+|+..++++..+.
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq 496 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQ 496 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCe
Confidence 99999999999999999999999999999999998887633 33447899999999999999999999999999886532
Q ss_pred --------------ccccHHHHHHHHhhcCCC
Q 007255 519 --------------TAVRNRHFQTVKDSLKPA 536 (611)
Q Consensus 519 --------------~~i~~~~~~~~l~~~~~~ 536 (611)
..+...||..|+.+..|+
T Consensus 497 ~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps 528 (1080)
T KOG0732|consen 497 IYSSSDKLLIDVALIKVEVRDFVEAMSRITPS 528 (1080)
T ss_pred eecccccccccchhhhhhhHhhhhhhhccCCC
Confidence 135667777777666544
No 43
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=7.2e-34 Score=313.97 Aligned_cols=247 Identities=40% Similarity=0.682 Sum_probs=225.6
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcccc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~ 364 (611)
....|+++.|.+..++.+.+.+.+ +..+..+..++...++|++|+||||||||++|+++|.+++.+|+.++++++...+
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 356799999999999999998876 5667777888888889999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccch
Q 007255 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDA 444 (611)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~ 444 (611)
.|.....++.+|..++...||||||||+|.+..+|+...........+.+++||.+||++....+++||+|||+|+.+|+
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 305 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence 99999999999999999999999999999999887654444445567899999999999988899999999999999999
Q ss_pred hccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHH
Q 007255 445 ALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNR 524 (611)
Q Consensus 445 al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~ 524 (611)
+++||||||+.|.|+.|+.++|.+||+.++++.++..++++..+|+.+.|||++||.++|++|+..|.++. ...++..
T Consensus 306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~--~~~i~~~ 383 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--KRVVSMV 383 (644)
T ss_pred HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC--CCcccHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999988764 5679999
Q ss_pred HHHHHHhhcC
Q 007255 525 HFQTVKDSLK 534 (611)
Q Consensus 525 ~~~~~l~~~~ 534 (611)
|+..++.++.
T Consensus 384 d~~~a~~~v~ 393 (644)
T PRK10733 384 EFEKAKDKIM 393 (644)
T ss_pred HHHHHHHHHh
Confidence 9999987663
No 44
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-34 Score=269.44 Aligned_cols=244 Identities=33% Similarity=0.592 Sum_probs=218.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~ 95 (611)
....||+|++.+++.+.+.++.|+-+|+.|.+.|+++|++++|||+||||||.||+++|+.....|+.+-.+++...|.|
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylG 261 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 261 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhc
Confidence 56699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccc
Q 007255 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA 174 (611)
Q Consensus 96 ~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~ 174 (611)
+-.+.++++|..+...+ |+|+||||||.+...+- .++....++++.++.++.....-. ..+.|-+|.+||..+.
T Consensus 262 dGpklvRqlF~vA~e~a----pSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFd-srgDvKvimATnrie~ 336 (440)
T KOG0726|consen 262 DGPKLVRELFRVAEEHA----PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-SRGDVKVIMATNRIET 336 (440)
T ss_pred cchHHHHHHHHHHHhcC----CceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcc-ccCCeEEEEecccccc
Confidence 99999999999998776 99999999999987663 334445567776666665443322 3457999999999999
Q ss_pred ccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhccccccc
Q 007255 175 IDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANEC 254 (611)
Q Consensus 175 l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~ 254 (611)
+||++.||||+++.|+|+.||...+..||+.+.....+..+++++.+...-+.++|.||.++|.+|...+++...
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR----- 411 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR----- 411 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988543
Q ss_pred ccccchhHHHHHHHHhcc
Q 007255 255 AGVLSVTMEDWRHARSVV 272 (611)
Q Consensus 255 ~~~~~v~~ed~~~a~~~i 272 (611)
+.++++||..+...+
T Consensus 412 ---m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 412 ---MKVTMEDFKKAKEKV 426 (440)
T ss_pred ---hhccHHHHHHHHHHH
Confidence 468999999887654
No 45
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=259.09 Aligned_cols=238 Identities=36% Similarity=0.628 Sum_probs=213.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccchH
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESE 98 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~~ 98 (611)
+=++|++.+++.+.+.++.|..+|+.+..+|+..|+++||+||||||||.+++++|....+.|+.++.+++...+.|+-.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegs 226 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGS 226 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCC-CCchhhHHHHHHHHHHH---hcCCCCCCCCCcEEEEEeecCccc
Q 007255 99 KALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLM---DSNKPSKTSVPHVVVVASTNRVDA 174 (611)
Q Consensus 99 ~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~-~~~~~~~~~~~~ll~~l---~~~~~~~~~~~~v~ii~ttn~~~~ 174 (611)
+.++++|-.+..++ |+|+|+||||.+...+. ++...+++++..++.++ |++..+ .++-+|.+||+.+-
T Consensus 227 rmvrelfvmareha----psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat----knikvimatnridi 298 (404)
T KOG0728|consen 227 RMVRELFVMAREHA----PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT----KNIKVIMATNRIDI 298 (404)
T ss_pred HHHHHHHHHHHhcC----CceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc----cceEEEEecccccc
Confidence 99999999998886 99999999999998763 33334666776665554 444433 36899999999999
Q ss_pred ccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhccccccc
Q 007255 175 IDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANEC 254 (611)
Q Consensus 175 l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~ 254 (611)
+||++.|+||+++.|+||+|+.+.|.+|++.+.++..+....+++.++....|-+|.++..+|.+|...+++..
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------ 372 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------ 372 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred ccccchhHHHHHHHHhcc
Q 007255 255 AGVLSVTMEDWRHARSVV 272 (611)
Q Consensus 255 ~~~~~v~~ed~~~a~~~i 272 (611)
...++.+||..+..++
T Consensus 373 --rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 373 --RVHVTQEDFEMAVAKV 388 (404)
T ss_pred --hccccHHHHHHHHHHH
Confidence 3468999998887654
No 46
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.2e-33 Score=289.93 Aligned_cols=249 Identities=32% Similarity=0.555 Sum_probs=215.0
Q ss_pred ccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEc
Q 007255 6 RIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVIS 85 (611)
Q Consensus 6 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 85 (611)
.+...++..| ++|+|++.+++.|++.+..|+.+++.+..+|+.+|+++||+||||||||++++++|++++.+++.+.
T Consensus 135 ~~~~~p~v~~---~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~ 211 (398)
T PTZ00454 135 QMSEKPDVTY---SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV 211 (398)
T ss_pred cccCCCCCCH---HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 3445666666 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC-Cc---hhhHHHHHHHHHHHhcCCCCCCCCC
Q 007255 86 PHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RR---EQDVRIASQLFTLMDSNKPSKTSVP 161 (611)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~-~~---~~~~~~~~~ll~~l~~~~~~~~~~~ 161 (611)
++.+...+.|+....++.+|..+... .|+||||||+|.++..+.. .. ....+++..++..++.... ..
T Consensus 212 ~s~l~~k~~ge~~~~lr~lf~~A~~~----~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~----~~ 283 (398)
T PTZ00454 212 GSEFVQKYLGEGPRMVRDVFRLAREN----APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ----TT 283 (398)
T ss_pred hHHHHHHhcchhHHHHHHHHHHHHhc----CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC----CC
Confidence 99988889999888999999887644 5999999999999876522 11 1223455566666665432 23
Q ss_pred cEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHH
Q 007255 162 HVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREAT 241 (611)
Q Consensus 162 ~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~ 241 (611)
++.+|++||.++.+||++.|+|||+..|+|+.|+.++|..||+.++.+..+..+.++..++..++||+|+||.++|++|.
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~ 363 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAG 363 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHhhhcccccccccccchhHHHHHHHHhccC
Q 007255 242 MSAVKRSSDANECAGVLSVTMEDWRHARSVVG 273 (611)
Q Consensus 242 ~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~ 273 (611)
..++++.. ..++.+||..+...+.
T Consensus 364 ~~A~r~~~--------~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 364 MQAVRKNR--------YVILPKDFEKGYKTVV 387 (398)
T ss_pred HHHHHcCC--------CccCHHHHHHHHHHHH
Confidence 99887643 3688999999877653
No 47
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-32 Score=300.95 Aligned_cols=404 Identities=19% Similarity=0.249 Sum_probs=268.8
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEcc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVISP 86 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~ 86 (611)
.++.++|.+..+..+.+++.. ..++++||+||||||||++++.++..+ +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 457788888888888876643 235788999999999999999999875 445566655
Q ss_pred cccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEE
Q 007255 87 HSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (611)
Q Consensus 87 ~~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ 164 (611)
..+. ..+.|+.+..++.++..+... .++||||||+|.+++.+.... ....+.+.|...+.. +.+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~----~~~ILfIDEIh~L~g~g~~~~-g~~d~~nlLkp~L~~--------g~i~ 317 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQD----TNSILFIDEIHTIIGAGAASG-GQVDAANLIKPLLSS--------GKIR 317 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhc----CCCEEEeccHHHHhccCCCCC-cHHHHHHHHHHHHhC--------CCeE
Confidence 5544 356778888888888877532 478999999999987654211 122344444445542 3589
Q ss_pred EEEeecCcc-----cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCccc-----HHHHHHhccCCc-----
Q 007255 165 VVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-----LEAIATSCNGYV----- 229 (611)
Q Consensus 165 ii~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-----~~~la~~~~g~~----- 229 (611)
+|++||..+ ..|+++.| ||. .|.++.|+.+++..|++.+...+....++. +...+..+..|.
T Consensus 318 vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~l 394 (758)
T PRK11034 318 VIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHL 394 (758)
T ss_pred EEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccC
Confidence 999999864 56999999 996 899999999999999998766554433332 444555555542
Q ss_pred cccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhccCCcccccccc-------cCCCcccccccchhHHHHHH
Q 007255 230 GADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSITRGVTV-------EIPKVTWEDIGGLRDLKKKL 302 (611)
Q Consensus 230 ~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~~~~~~~~~-------~~~~~~~~~i~g~~~~k~~l 302 (611)
+.....++++|+....- .... .....++.+|+................. .....--..|+|++++++.+
T Consensus 395 PdKaidlldea~a~~~~--~~~~--~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l 470 (758)
T PRK11034 395 PDKAIDVIDEAGARARL--MPVS--KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEAL 470 (758)
T ss_pred hHHHHHHHHHHHHhhcc--Cccc--ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHH
Confidence 23456777777653311 0000 0112355566655544322111100000 00011123589999999999
Q ss_pred HHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc-----c-------cccchHH
Q 007255 303 QQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-----M-------YVGESEA 370 (611)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~-----~-------~~g~~~~ 370 (611)
.+.+........ . ..+|..++||+||||||||.+|+++|..++.+++.++++++.. + |+|....
T Consensus 471 ~~~i~~~~~gl~---~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~ 546 (758)
T PRK11034 471 TEAIKMSRAGLG---H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG 546 (758)
T ss_pred HHHHHHHhcccc---C-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCccccccc
Confidence 998864211000 0 1234457999999999999999999999999999999887643 1 2222111
Q ss_pred HHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--C-------CCCeEEEEecCCC--
Q 007255 371 LLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--Q-------AKGILVLAATNRP-- 439 (611)
Q Consensus 371 ~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~-------~~~~~vI~~tn~~-- 439 (611)
..+.+..+..+.+||||||+|.+ +..+.+.|++.||... . -.+++||+|||.-
T Consensus 547 --g~L~~~v~~~p~sVlllDEieka--------------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~ 610 (758)
T PRK11034 547 --GLLTDAVIKHPHAVLLLDEIEKA--------------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR 610 (758)
T ss_pred --chHHHHHHhCCCcEEEeccHhhh--------------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHH
Confidence 12333445556689999999987 3568899999997421 1 1368899999932
Q ss_pred -----------------------cccchhccCCCCccceeecCCCCHHHHHHHHHHHhc
Q 007255 440 -----------------------HAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTR 475 (611)
Q Consensus 440 -----------------------~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~ 475 (611)
..+.|.|+. |+|.+|.|++.+.++..+|+...+.
T Consensus 611 ~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred HHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 124466666 9999999999999999999986543
No 48
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.1e-33 Score=322.19 Aligned_cols=210 Identities=18% Similarity=0.257 Sum_probs=179.9
Q ss_pred hhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcccc----------cc----------------
Q 007255 313 STAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY----------VG---------------- 366 (611)
Q Consensus 313 ~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~----------~g---------------- 366 (611)
.....++|..+|+|+||+||||||||++|+|+|.++++||+.++++++..++ +|
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 4455788999999999999999999999999999999999999999998754 12
Q ss_pred ---------------chHH--HHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC---C
Q 007255 367 ---------------ESEA--LLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE---Q 426 (611)
Q Consensus 367 ---------------~~~~--~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---~ 426 (611)
..+. .++.+|+.|+..+||||||||||.+..+. .....+++|+++|++.. .
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccccCC
Confidence 1222 38889999999999999999999996541 11224789999999763 4
Q ss_pred CCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHH--hcCCCCCCc-ccHHHHHHhCCCCCHHHHHHH
Q 007255 427 AKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVH--TRNMKVGDD-VDLRSIAEETELFTGAELEGL 503 (611)
Q Consensus 427 ~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~--~~~~~~~~~-~~~~~la~~~~g~s~~~i~~~ 503 (611)
..+++||||||+|+.+||||+||||||+.|+++.|+..+|.+++... .+++....+ +++..+|+.|.|||||||.++
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 56899999999999999999999999999999999999999998854 455665543 689999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccHHHHHHHHhhc
Q 007255 504 CREAGIVALREDISATAVRNRHFQTVKDSL 533 (611)
Q Consensus 504 ~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~ 533 (611)
|++|+..|+++. ...|+..++..|+.+.
T Consensus 1850 vNEAaliAirq~--ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1850 TNEALSISITQK--KSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred HHHHHHHHHHcC--CCccCHHHHHHHHHHH
Confidence 999999999885 6679999999999765
No 49
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-33 Score=304.71 Aligned_cols=385 Identities=31% Similarity=0.445 Sum_probs=295.2
Q ss_pred cccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----cE
Q 007255 7 IMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-----HL 81 (611)
Q Consensus 7 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~-----~~ 81 (611)
+++-.......|++++|++.++..|++.+..|+.+++.+..+++.+|+++||+||||||||..++++|..+.. .+
T Consensus 253 ~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisf 332 (1080)
T KOG0732|consen 253 SDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISF 332 (1080)
T ss_pred cCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccch
Confidence 3444555567889999999999999999999999999999999999999999999999999999999998843 33
Q ss_pred EEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC-CchhhHHHHHHHHHHHhcCCCCCCCC
Q 007255 82 TVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSV 160 (611)
Q Consensus 82 ~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~ 160 (611)
+.-...+..+.|.|+.++.++.+|+++... +|+|+|+||||-|+|.+.. .......+...|+.+|++... .
T Consensus 333 fmrkgaD~lskwvgEaERqlrllFeeA~k~----qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds----R 404 (1080)
T KOG0732|consen 333 FMRKGADCLSKWVGEAERQLRLLFEEAQKT----QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS----R 404 (1080)
T ss_pred hhhcCchhhccccCcHHHHHHHHHHHHhcc----CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC----C
Confidence 444556777899999999999999999854 6999999999999998843 344566788999999998653 4
Q ss_pred CcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHH
Q 007255 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCRE 239 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~ 239 (611)
+.|++|++||+++.+||+++|+|||++.++|+.|+.+.|.+|+..+...+... ...-+..++..+.||.|.|++.+|.+
T Consensus 405 gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTe 484 (1080)
T KOG0732|consen 405 GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTE 484 (1080)
T ss_pred CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999988877633 22347889999999999999999999
Q ss_pred HHHHHhhhcccc--------cccccccchhHHHHHHHHhccCCccccccccc-CCCccccc-ccchhHHHHHHHHHhh--
Q 007255 240 ATMSAVKRSSDA--------NECAGVLSVTMEDWRHARSVVGPSITRGVTVE-IPKVTWED-IGGLRDLKKKLQQAVE-- 307 (611)
Q Consensus 240 a~~~a~~r~~~~--------~~~~~~~~v~~ed~~~a~~~i~~~~~~~~~~~-~~~~~~~~-i~g~~~~k~~l~~~~~-- 307 (611)
|...++++.--. ........+...||..+...+.|+..+..... .|....-. +.+.......++..+.
T Consensus 485 Aal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va 564 (1080)
T KOG0732|consen 485 AALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVA 564 (1080)
T ss_pred HhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHH
Confidence 999988764211 12233445788899999999888877743322 22111111 1112222222222111
Q ss_pred -----------ccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-CCcEEeecchhhcccc-ccchHHHHHH
Q 007255 308 -----------WPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-EASFFSLSGAELYSMY-VGESEALLRN 374 (611)
Q Consensus 308 -----------~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-~~~~~~~~~~~~~~~~-~g~~~~~~~~ 374 (611)
+.+...+..-...+--...+++.|..|.|=+.+..|+-+.+ +.++..+..+.++... .++.+..+..
T Consensus 565 ~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~ 644 (1080)
T KOG0732|consen 565 SSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVH 644 (1080)
T ss_pred hhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHH
Confidence 10000000000011112358899999999999999998887 6777778777777755 6667889999
Q ss_pred HHHHHHhcCCcEEEEcccccccccC
Q 007255 375 TFQRARLAAPSIIFFDEADVVGAKR 399 (611)
Q Consensus 375 ~~~~a~~~~p~il~iDeid~l~~~~ 399 (611)
+|..++...|||+||-++|.+....
T Consensus 645 i~~eaR~~~psi~~ip~~d~w~~~~ 669 (1080)
T KOG0732|consen 645 IFMEARKTTPSIVFIPNVDEWARVI 669 (1080)
T ss_pred HHHHHhccCCceeeccchhhhhhcC
Confidence 9999999999999999999876443
No 50
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=5e-33 Score=257.16 Aligned_cols=237 Identities=32% Similarity=0.538 Sum_probs=202.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~ 95 (611)
-.++|++|++++|+.-.-++.+ +..|+.+.. =.|+++||+||||||||++|+++|++.+.+++.+.+.++...+.|
T Consensus 118 it~ddViGqEeAK~kcrli~~y-LenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG 193 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEY-LENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG 193 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHH-hhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh
Confidence 5789999999999887665554 555555543 358999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCC--chhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcc
Q 007255 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR--REQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD 173 (611)
Q Consensus 96 ~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~ 173 (611)
+..+.++.+|+.+...+ |||+||||+|.++-++..+ ...-++++++|++.||+... ...|+.|++||+++
T Consensus 194 dgar~Ihely~rA~~~a----PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e----neGVvtIaaTN~p~ 265 (368)
T COG1223 194 DGARRIHELYERARKAA----PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE----NEGVVTIAATNRPE 265 (368)
T ss_pred hHHHHHHHHHHHHHhcC----CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc----CCceEEEeecCChh
Confidence 99999999999998775 9999999999998776432 22345788999999998663 33689999999999
Q ss_pred cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHH-HHHHHHHHHHhhhccccc
Q 007255 174 AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLE-ALCREATMSAVKRSSDAN 252 (611)
Q Consensus 174 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~-~l~~~a~~~a~~r~~~~~ 252 (611)
.+|+++++ ||...|+|..|+.++|..|++.+.+.+++.-+.+++.++..+.|+||+||. .++..|.+.++....+
T Consensus 266 ~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e-- 341 (368)
T COG1223 266 LLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDRE-- 341 (368)
T ss_pred hcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchh--
Confidence 99999999 999999999999999999999999999999999999999999999999986 4666777777765443
Q ss_pred ccccccchhHHHHHHHHhccCC
Q 007255 253 ECAGVLSVTMEDWRHARSVVGP 274 (611)
Q Consensus 253 ~~~~~~~v~~ed~~~a~~~i~~ 274 (611)
.+..+|+..+..+..+
T Consensus 342 ------~v~~edie~al~k~r~ 357 (368)
T COG1223 342 ------KVEREDIEKALKKERK 357 (368)
T ss_pred ------hhhHHHHHHHHHhhcc
Confidence 5778888888775433
No 51
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-33 Score=272.26 Aligned_cols=227 Identities=36% Similarity=0.593 Sum_probs=202.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGL-KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~-~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~ 94 (611)
..++||+|++.+++.|++.+..|+.+++.+...++ +++++|||+||||||||++|+++|++.+.+|+.|+.+.+.+.++
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 44599999999999999999999999999975443 68899999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcc
Q 007255 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD 173 (611)
Q Consensus 95 ~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~ 173 (611)
|+..+.++.+|.-+... +|+||||||+|.+...+.. ..+.....-++++...|+...... ..|+|+|+||+|.
T Consensus 169 gE~eKlv~AvFslAsKl----~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~--~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKL----QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDS--ERVLVLGATNRPF 242 (386)
T ss_pred HHHHHHHHHHHhhhhhc----CcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCC--ceEEEEeCCCCCc
Confidence 99999999999988744 5999999999999887732 233444566788888887665432 3599999999999
Q ss_pred cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhccc
Q 007255 174 AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD 250 (611)
Q Consensus 174 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~ 250 (611)
++|.++.| |+...++++.|+..+|.+|++..++...++.++|+..++..|+||+|+||.++|+.|....++....
T Consensus 243 DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 243 DLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred cHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999988886654
No 52
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-33 Score=297.30 Aligned_cols=240 Identities=38% Similarity=0.592 Sum_probs=216.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~ 95 (611)
..|.|+.|.+++|++|++++.+ +.+|+.|.++|.+.|+++||+||||||||.||+++|.+.+.+|+.++++++...+.|
T Consensus 308 V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g 386 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVG 386 (774)
T ss_pred CccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcc
Confidence 5679999999999999999976 899999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCC-----CCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 007255 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-----HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (611)
Q Consensus 96 ~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~-----~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn 170 (611)
.-..+++++|..++... |||+||||||.+...+. +.+......+++|+..||.+... ..|+++++||
T Consensus 387 ~~asrvr~lf~~ar~~a----P~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~----~~vi~~a~tn 458 (774)
T KOG0731|consen 387 VGASRVRDLFPLARKNA----PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS----KGVIVLAATN 458 (774)
T ss_pred cchHHHHHHHHHhhccC----CeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC----CcEEEEeccC
Confidence 88999999999998665 99999999999998773 33445567889999999987654 3699999999
Q ss_pred CcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcc
Q 007255 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSAVKRSS 249 (611)
Q Consensus 171 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~ 249 (611)
+++-+|++++|+|||++.|+++.|+...|.+|++.++...... .+.++..++..|.||+|.||.++|++|...+.++..
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988875 777888899999999999999999999999988654
Q ss_pred cccccccccchhHHHHHHHHhcc
Q 007255 250 DANECAGVLSVTMEDWRHARSVV 272 (611)
Q Consensus 250 ~~~~~~~~~~v~~ed~~~a~~~i 272 (611)
. .+...++..+...+
T Consensus 539 ~--------~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 539 R--------EIGTKDLEYAIERV 553 (774)
T ss_pred C--------ccchhhHHHHHHHH
Confidence 3 46777777776643
No 53
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.6e-32 Score=284.09 Aligned_cols=255 Identities=38% Similarity=0.622 Sum_probs=217.8
Q ss_pred cccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 5 GRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 5 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
+.+...++..| ++|+|++++++.|.+.+..|+.+++.+...|+.+|+++||+||||||||++|+++|++++.+++.+
T Consensus 120 ~~~~~~p~~~~---~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 120 MEVIESPNVTY---EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred eeecCCCCCCH---HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEe
Confidence 44556667777 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCc-hhhHHHHHH---HHHHHhcCCCCCCCC
Q 007255 85 SPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR-EQDVRIASQ---LFTLMDSNKPSKTSV 160 (611)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~-~~~~~~~~~---ll~~l~~~~~~~~~~ 160 (611)
+++++...+.|.....++.+|..+... .|+||||||+|.++..+.... ..+..++.. ++..++... ..
T Consensus 197 ~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~----~~ 268 (389)
T PRK03992 197 VGSELVQKFIGEGARLVRELFELAREK----APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD----PR 268 (389)
T ss_pred ehHHHhHhhccchHHHHHHHHHHHHhc----CCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC----CC
Confidence 999999889999889999999887654 499999999999987654221 112233334 444444332 22
Q ss_pred CcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHH
Q 007255 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREA 240 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a 240 (611)
.++.||+|||.++.+|+++.|++||+..|+|++|+.++|.+|++.++....+..+.++..++..++||+|+|+..+|++|
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA 348 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEA 348 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999988888888999999999999999999999999
Q ss_pred HHHHhhhcccccccccccchhHHHHHHHHhccCCcccc
Q 007255 241 TMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSITR 278 (611)
Q Consensus 241 ~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~~~~~ 278 (611)
...+++... ..++.+||..|...+.+....
T Consensus 349 ~~~a~~~~~--------~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 349 GMFAIRDDR--------TEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred HHHHHHcCC--------CCcCHHHHHHHHHHHhccccc
Confidence 999887632 358999999999888776544
No 54
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-33 Score=257.81 Aligned_cols=251 Identities=32% Similarity=0.560 Sum_probs=220.2
Q ss_pred ccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEc
Q 007255 6 RIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVIS 85 (611)
Q Consensus 6 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 85 (611)
.+.+.+++.+ ++++|..++++.|++.++.|+.+++.+-.+|+.+|+++|+|||||||||..++++|+..+..|+.+-
T Consensus 167 ~veekpdvty---~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvi 243 (435)
T KOG0729|consen 167 QVEEKPDVTY---SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVI 243 (435)
T ss_pred EeecCCCccc---ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeeh
Confidence 3455566666 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCC-CCCchhhHHHHHHHHHHHhcCCCCCCCCCcEE
Q 007255 86 PHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR-DHRREQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (611)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ 164 (611)
.+++...|.|+-.+.++++|+.+... +-||+|+||+|.+...+ +.+...+.+++..++.++..... ..+.+++-
T Consensus 244 gselvqkyvgegarmvrelf~martk----kaciiffdeidaiggarfddg~ggdnevqrtmleli~qldg-fdprgnik 318 (435)
T KOG0729|consen 244 GSELVQKYVGEGARMVRELFEMARTK----KACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-FDPRGNIK 318 (435)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHhccc----ceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccC-CCCCCCeE
Confidence 99999999999999999999988743 57999999999998765 44445566778777776655433 23556899
Q ss_pred EEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHH
Q 007255 165 VVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSA 244 (611)
Q Consensus 165 ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a 244 (611)
++.+||+|+.+||++.|+||.++.++|..|+.+-|..||+.+.+......+..++.++..|..-+|.+|+.+|.+|...+
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfa 398 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 398 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhcccccccccccchhHHHHHHHHhcc
Q 007255 245 VKRSSDANECAGVLSVTMEDWRHARSVV 272 (611)
Q Consensus 245 ~~r~~~~~~~~~~~~v~~ed~~~a~~~i 272 (611)
++.... ..++.||..+..++
T Consensus 399 irarrk--------~atekdfl~av~kv 418 (435)
T KOG0729|consen 399 IRARRK--------VATEKDFLDAVNKV 418 (435)
T ss_pred HHHHhh--------hhhHHHHHHHHHHH
Confidence 774332 46778887776544
No 55
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-32 Score=285.18 Aligned_cols=231 Identities=35% Similarity=0.607 Sum_probs=214.0
Q ss_pred ccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccc
Q 007255 8 MSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH 87 (611)
Q Consensus 8 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~ 87 (611)
..+++..| ++|+|+.++++.|.+.+.+|-.++..+...+++.+.+||||||||||||.+|.++|...+..|+.+...
T Consensus 659 ~k~tgi~w---~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGP 735 (952)
T KOG0735|consen 659 VKSTGIRW---EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGP 735 (952)
T ss_pred cccCCCCc---eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCH
Confidence 45667888 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCC-chhhHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 007255 88 SVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-REQDVRIASQLFTLMDSNKPSKTSVPHVVVV 166 (611)
Q Consensus 88 ~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii 166 (611)
++.+.|.|.+++.++.+|..+... +|||||+||+|.++|.++.. .....+++++|++.||+... ...|.|+
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a----~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg----l~GV~i~ 807 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSA----KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG----LDGVYIL 807 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhcc----CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc----cceEEEE
Confidence 999999999999999999998744 69999999999999988643 34566899999999998664 3369999
Q ss_pred EeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhh
Q 007255 167 ASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVK 246 (611)
Q Consensus 167 ~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~ 246 (611)
++|.+|+.+||+++||||+++.++.+.|+..+|.+|++.+......+.+++++.+|..|+||+|.|+..++-.|...++.
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh 887 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVH 887 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred hcc
Q 007255 247 RSS 249 (611)
Q Consensus 247 r~~ 249 (611)
+..
T Consensus 888 ~~l 890 (952)
T KOG0735|consen 888 EIL 890 (952)
T ss_pred HHH
Confidence 654
No 56
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.7e-32 Score=308.42 Aligned_cols=251 Identities=49% Similarity=0.759 Sum_probs=230.2
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccc
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~ 363 (611)
.+.++|++|+|++.+++.+.+.+..|+.+++.+.++|+.+++++|||||||||||++|+++|++++.+++.++++++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccc
Q 007255 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAID 443 (611)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld 443 (611)
|.|.++..++.+|..+....|+||||||+|.+.++++... .....+++++|+..|+++...++++||++||+|+.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999998764322 2345788999999999988888999999999999999
Q ss_pred hhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc------
Q 007255 444 AALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDIS------ 517 (611)
Q Consensus 444 ~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~------ 517 (611)
++++|+|||+..+.++.|+.++|.+||+.+.+++.+..++++..+++.++||+++++..+|++|...++++.+.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999998888899999999999999999999999999998877543
Q ss_pred -----------cccccHHHHHHHHhhcCCCC
Q 007255 518 -----------ATAVRNRHFQTVKDSLKPAL 537 (611)
Q Consensus 518 -----------~~~i~~~~~~~~l~~~~~~~ 537 (611)
...++..||..++..++|+.
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccccc
Confidence 12467889999998887763
No 57
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.8e-32 Score=270.48 Aligned_cols=170 Identities=21% Similarity=0.236 Sum_probs=149.4
Q ss_pred cCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccccccchHHHHHHHHHHHHh-----cCCcEEEEcccc
Q 007255 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARL-----AAPSIIFFDEAD 393 (611)
Q Consensus 319 ~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~-----~~p~il~iDeid 393 (611)
.++++|++++||||||||||++|+++|++++++++.++++++.++|.|+++++++.+|..|+. .+||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 578999999999999999999999999999999999999999999999999999999999975 469999999999
Q ss_pred cccccCCCCCCCCcchhHHHH-HHHHHHhcCC------------CCCCCeEEEEecCCCcccchhccCCCCccceeecCC
Q 007255 394 VVGAKRGGSSSTSITVGERLL-STLLTEMDGL------------EQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPP 460 (611)
Q Consensus 394 ~l~~~~~~~~~~~~~~~~~~~-~~ll~~l~~~------------~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~ 460 (611)
.+++.++. .+....++++ .+|+++||+. +...+++||+|||+|+.||++|+||||||+.+ +.
T Consensus 223 A~~g~r~~---~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~l 297 (413)
T PLN00020 223 AGAGRFGT---TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WA 297 (413)
T ss_pred hcCCCCCC---CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CC
Confidence 99998863 2234445665 7999998863 34567999999999999999999999999865 58
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCC
Q 007255 461 PDLEARHEILRVHTRNMKVGDDVDLRSIAEETEL 494 (611)
Q Consensus 461 p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g 494 (611)
|+.++|..||+.++++..+. .+++..|+..+.|
T Consensus 298 Pd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 298 PTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred CCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 99999999999999987765 5778888888766
No 58
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.6e-31 Score=282.82 Aligned_cols=239 Identities=29% Similarity=0.394 Sum_probs=205.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~ 95 (611)
..+++|+|++.+|+.+.+.... +.......|+.+|+++||+||||||||++|+++|++++.+++.++++.+.+.+.|
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vG 301 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVG 301 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccC
Confidence 4679999999999999875432 3445567899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCC--CCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcc
Q 007255 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD--HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD 173 (611)
Q Consensus 96 ~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~ 173 (611)
+++..++.+|..+... .||||||||+|.++.... +.+....++...++..++... .++++|+|||.++
T Consensus 302 ese~~l~~~f~~A~~~----~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~------~~V~vIaTTN~~~ 371 (489)
T CHL00195 302 ESESRMRQMIRIAEAL----SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKK------SPVFVVATANNID 371 (489)
T ss_pred hHHHHHHHHHHHHHhc----CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCC------CceEEEEecCChh
Confidence 9999999999887654 499999999999887533 223345677788888887522 2589999999999
Q ss_pred cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC--CcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccc
Q 007255 174 AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD--ANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDA 251 (611)
Q Consensus 174 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~--~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~ 251 (611)
.+|+++.|+|||+..++++.|+.++|.+||+.++.+.... .+.++..++..|+||+|+||+++|.+|+..+....
T Consensus 372 ~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~--- 448 (489)
T CHL00195 372 LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK--- 448 (489)
T ss_pred hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 9999999999999999999999999999999999886543 46789999999999999999999999998887643
Q ss_pred cccccccchhHHHHHHHHhccCCcc
Q 007255 252 NECAGVLSVTMEDWRHARSVVGPSI 276 (611)
Q Consensus 252 ~~~~~~~~v~~ed~~~a~~~i~~~~ 276 (611)
..++.+|+..+...+.|..
T Consensus 449 ------~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 449 ------REFTTDDILLALKQFIPLA 467 (489)
T ss_pred ------CCcCHHHHHHHHHhcCCCc
Confidence 2478999999999888864
No 59
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.2e-31 Score=279.38 Aligned_cols=247 Identities=34% Similarity=0.577 Sum_probs=211.8
Q ss_pred cccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 007255 7 IMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISP 86 (611)
Q Consensus 7 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~ 86 (611)
+...+...| ++|+|++++++.|.+++..|+.++..+..+|+.+|.++||+||||||||++++++|++++.+++.+..
T Consensus 174 ~~~~p~~~~---~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~ 250 (438)
T PTZ00361 174 VDKAPLESY---ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVG 250 (438)
T ss_pred cccCCCCCH---HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEec
Confidence 444555555 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCC-chhh---HHHHHHHHHHHhcCCCCCCCCCc
Q 007255 87 HSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-REQD---VRIASQLFTLMDSNKPSKTSVPH 162 (611)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~-~~~~---~~~~~~ll~~l~~~~~~~~~~~~ 162 (611)
+++...+.|.....++.+|..+... .|+||||||+|.++..+... .... .+.+..++..++.... ..+
T Consensus 251 seL~~k~~Ge~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~----~~~ 322 (438)
T PTZ00361 251 SELIQKYLGDGPKLVRELFRVAEEN----APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS----RGD 322 (438)
T ss_pred chhhhhhcchHHHHHHHHHHHHHhC----CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc----cCC
Confidence 9998889999888899999887643 59999999999998765321 1112 2334455566665432 235
Q ss_pred EEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHH
Q 007255 163 VVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATM 242 (611)
Q Consensus 163 v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~ 242 (611)
+.||++||.++.+|+++.|++||+..|+|+.|+.++|.+||+.++.+..+..+.++..++..+.|++|+|+..+|.+|..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~ 402 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGL 402 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998888888899999999999999999999999999
Q ss_pred HHhhhcccccccccccchhHHHHHHHHhcc
Q 007255 243 SAVKRSSDANECAGVLSVTMEDWRHARSVV 272 (611)
Q Consensus 243 ~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i 272 (611)
.|+++.. ..++.+||..|...+
T Consensus 403 ~Alr~~r--------~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 403 LALRERR--------MKVTQADFRKAKEKV 424 (438)
T ss_pred HHHHhcC--------CccCHHHHHHHHHHH
Confidence 9987643 358899999887765
No 60
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.3e-31 Score=287.02 Aligned_cols=254 Identities=41% Similarity=0.639 Sum_probs=227.1
Q ss_pred ccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEc
Q 007255 6 RIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVIS 85 (611)
Q Consensus 6 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 85 (611)
.....+++.| ++++|++.+++.+++.+..|+..++.+...+++++.++||+||||||||++++++|.+++.+|+.+.
T Consensus 232 ~~~~~~~v~~---~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~ 308 (494)
T COG0464 232 VLFEDEDVTL---DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK 308 (494)
T ss_pred cccCCCCcce---ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEee
Confidence 3445667777 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchh-hHHHHHHHHHHHhcCCCCCCCCCcEE
Q 007255 86 PHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQ-DVRIASQLFTLMDSNKPSKTSVPHVV 164 (611)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~~~v~ 164 (611)
.+++.+.+.|++++.++.+|..+... .||||||||+|.+++.+...... ..+++.+++..++...... +|+
T Consensus 309 ~~~l~sk~vGesek~ir~~F~~A~~~----~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~----~v~ 380 (494)
T COG0464 309 GSELLSKWVGESEKNIRELFEKARKL----APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE----GVL 380 (494)
T ss_pred CHHHhccccchHHHHHHHHHHHHHcC----CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC----ceE
Confidence 99999999999999999999999855 49999999999999988654433 3589999999998765433 589
Q ss_pred EEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCC--CCcccHHHHHHhccCCccccHHHHHHHHHH
Q 007255 165 VVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPL--DANVDLEAIATSCNGYVGADLEALCREATM 242 (611)
Q Consensus 165 ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~--~~~~~~~~la~~~~g~~~~dl~~l~~~a~~ 242 (611)
+|++||.++.+|+++.|+|||+..+++++|+.++|.+||+.++..... ..+.++..++..++||+|.|+..+|++|..
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~ 460 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAAL 460 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986544 577899999999999999999999999999
Q ss_pred HHhhhcccccccccccchhHHHHHHHHhccCCccc
Q 007255 243 SAVKRSSDANECAGVLSVTMEDWRHARSVVGPSIT 277 (611)
Q Consensus 243 ~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~~~~ 277 (611)
.+++... ...++.+||..+...+.|+..
T Consensus 461 ~~~~~~~-------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 461 EALREAR-------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred HHHHHhc-------cCCccHHHHHHHHHhcCCCCC
Confidence 9988664 346889999999988777643
No 61
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.97 E-value=1.5e-29 Score=286.30 Aligned_cols=437 Identities=19% Similarity=0.238 Sum_probs=278.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----------CcEEEEc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG----------AHLTVIS 85 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~----------~~~~~v~ 85 (611)
..+++++|+++.+..+.+.+.. +..++++|+||||||||++++.+|+.+. ..++.++
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 5678999999988887776533 2446899999999999999999999872 4566676
Q ss_pred ccccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcE
Q 007255 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (611)
Q Consensus 86 ~~~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v 163 (611)
.+.+. ..+.|+.+..++.+++.+... +.++||||||+|.+.+.+...+.. ...+.|...+.. +.+
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~---~~~~ILfIDEih~l~~~g~~~~~~--d~~n~Lkp~l~~--------G~l 317 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKAS---PQPIILFIDEAHTLIGAGGQAGQG--DAANLLKPALAR--------GEL 317 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhc---CCCeEEEEeChHHhccCCCccccc--cHHHHhhHHhhC--------CCe
Confidence 66654 357788889999999988642 357899999999998765432222 223344444443 358
Q ss_pred EEEEeecCcc-----cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-----CcccHHHHHHhccCCccc--
Q 007255 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-----ANVDLEAIATSCNGYVGA-- 231 (611)
Q Consensus 164 ~ii~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-----~~~~~~~la~~~~g~~~~-- 231 (611)
.+|++|+..+ .+|++|.| ||. .|.+++|+.+++..|++.+...+... .+..+..++..+.+|...
T Consensus 318 ~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~ 394 (852)
T TIGR03345 318 RTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQ 394 (852)
T ss_pred EEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccccccc
Confidence 8999998743 58999999 995 89999999999999987665443221 233477778888777432
Q ss_pred ---cHHHHHHHHHHHH-hhhcccc---------------------cc-----ccc----cc-------------------
Q 007255 232 ---DLEALCREATMSA-VKRSSDA---------------------NE-----CAG----VL------------------- 258 (611)
Q Consensus 232 ---dl~~l~~~a~~~a-~~r~~~~---------------------~~-----~~~----~~------------------- 258 (611)
-.-.++++|+... +...... .+ ... .+
T Consensus 395 LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (852)
T TIGR03345 395 LPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQ 474 (852)
T ss_pred CccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233444443211 1100000 00 000 00
Q ss_pred -----------------------------------------------------chhHHHHHHHHhccCCcccccccccCC
Q 007255 259 -----------------------------------------------------SVTMEDWRHARSVVGPSITRGVTVEIP 285 (611)
Q Consensus 259 -----------------------------------------------------~v~~ed~~~a~~~i~~~~~~~~~~~~~ 285 (611)
.++.+|+...... .. .+|
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~-------~t--gip 545 (852)
T TIGR03345 475 QEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVAD-------WT--GIP 545 (852)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHH-------HH--CCC
Confidence 0000000000000 00 011
Q ss_pred Cc----------------ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-
Q 007255 286 KV----------------TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA- 348 (611)
Q Consensus 286 ~~----------------~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~- 348 (611)
.. --..|+|++.+.+.+.+.+......-. .+.+|...+||+||||||||.+|+++|..+
T Consensus 546 ~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 546 VGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLE----DPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred chhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 10 013578898888888887764211000 011222348999999999999999999998
Q ss_pred --CCcEEeecchhhccc------------cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 349 --EASFFSLSGAELYSM------------YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 349 --~~~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
...++.++++++... |+|..+.. .+....+..+.+||+|||++.. +..+.
T Consensus 622 ~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka--------------~~~v~ 685 (852)
T TIGR03345 622 GGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKA--------------HPDVL 685 (852)
T ss_pred CCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhc--------------CHHHH
Confidence 457889998876432 44433221 2344556677899999999865 35677
Q ss_pred HHHHHHhcCCC---------CCCCeEEEEecCCCc-----------------------------ccchhccCCCCcccee
Q 007255 415 STLLTEMDGLE---------QAKGILVLAATNRPH-----------------------------AIDAALMRPGRFDLVL 456 (611)
Q Consensus 415 ~~ll~~l~~~~---------~~~~~~vI~~tn~~~-----------------------------~ld~al~r~gRf~~~i 456 (611)
+.|+..+|... .-.+.+||+|||... .+.|+|+. |++ +|
T Consensus 686 ~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI 762 (852)
T TIGR03345 686 ELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VI 762 (852)
T ss_pred HHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EE
Confidence 88888887432 014688999998522 13455665 998 89
Q ss_pred ecCCCCHHHHHHHHHHHhcCC--------CCC---CcccHHHHHHhCCC--CCHHHHHHHHHHHHHHHHH
Q 007255 457 YVPPPDLEARHEILRVHTRNM--------KVG---DDVDLRSIAEETEL--FTGAELEGLCREAGIVALR 513 (611)
Q Consensus 457 ~~~~p~~~~r~~il~~~~~~~--------~~~---~~~~~~~la~~~~g--~s~~~i~~~~~~a~~~a~~ 513 (611)
.|.+.+.++..+|++..+... ++. ++..++.|+....+ |-.+.++.+++.-...++-
T Consensus 763 ~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la 832 (852)
T TIGR03345 763 PYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELS 832 (852)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999998654331 221 22335677776643 5577888877765554443
No 62
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-31 Score=280.85 Aligned_cols=244 Identities=39% Similarity=0.574 Sum_probs=222.1
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccc
Q 007255 13 EKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA 92 (611)
Q Consensus 13 ~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~ 92 (611)
....+|+|+.|.+++|+.+.+.+.. +..|..|.++|.+.|++++|+||||||||.+|+++|.+.+.+|+.++.+++...
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 4457889999999999999999876 888999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCC----CCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 007255 93 HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD----HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS 168 (611)
Q Consensus 93 ~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~----~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~t 168 (611)
+.|.-...++++|.+++..+ |||+||||+|.+...+. +++......+++|+..||.+... ..|+++++
T Consensus 223 fVGvGAsRVRdLF~qAkk~a----P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~----~gviviaa 294 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNA----PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN----EGVIVIAA 294 (596)
T ss_pred hcCCCcHHHHHHHHHhhccC----CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC----CceEEEec
Confidence 99999999999999998665 99999999999998874 44555667889999999987632 35999999
Q ss_pred ecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhc
Q 007255 169 TNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRS 248 (611)
Q Consensus 169 tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~ 248 (611)
||+++-+|++|.|+|||++.+.++.||...|.+|++.+.+..++..++++..+++.|.|++|.|+.+++++|...+.++.
T Consensus 295 TNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n 374 (596)
T COG0465 295 TNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN 374 (596)
T ss_pred CCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ccccccccccchhHHHHHHHHhccC
Q 007255 249 SDANECAGVLSVTMEDWRHARSVVG 273 (611)
Q Consensus 249 ~~~~~~~~~~~v~~ed~~~a~~~i~ 273 (611)
.. .+++.++..+..++-
T Consensus 375 ~~--------~i~~~~i~ea~drv~ 391 (596)
T COG0465 375 KK--------EITMRDIEEAIDRVI 391 (596)
T ss_pred Ce--------eEeccchHHHHHHHh
Confidence 53 577888888877653
No 63
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.97 E-value=2.9e-29 Score=285.69 Aligned_cols=442 Identities=21% Similarity=0.252 Sum_probs=279.9
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEcc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVISP 86 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~ 86 (611)
.+++++|.++.++.+.+++.. +.+++++|+||||||||++++.+|..+ +..++.++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 468899999999999988743 245789999999999999999999987 367888888
Q ss_pred cccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEE
Q 007255 87 HSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (611)
Q Consensus 87 ~~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ 164 (611)
+.+. ..+.|+.+..++.+++.+... .++||||||+|.+...+...+. ....+.|...+.. +.+.
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~----~~~ILfiDEih~l~~~g~~~g~--~~~a~lLkp~l~r--------g~l~ 309 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQEN----NNIILVIDEVHTLIGAGAAEGA--IDAANILKPALAR--------GELQ 309 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhc----CCeEEEEecHHHHhcCCCCCCc--ccHHHHhHHHHhC--------CCcE
Confidence 7765 467788999999999988643 4789999999999876543222 2334444455543 2578
Q ss_pred EEEeecCcc-----cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcC----CCCC-CcccHHHHHHhccCCccc---
Q 007255 165 VVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK----VPLD-ANVDLEAIATSCNGYVGA--- 231 (611)
Q Consensus 165 ii~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~----~~~~-~~~~~~~la~~~~g~~~~--- 231 (611)
+|++|+..+ ..|+++.+ ||. .+.++.|+.++...|++..... .... .+..+..++..+.+|...
T Consensus 310 ~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~l 386 (821)
T CHL00095 310 CIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFL 386 (821)
T ss_pred EEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccC
Confidence 899998754 46899998 996 6899999999999998754322 2222 233467777777777542
Q ss_pred --cHHHHHHHHHHHH-hhhcccccc------------------------------------------------------c
Q 007255 232 --DLEALCREATMSA-VKRSSDANE------------------------------------------------------C 254 (611)
Q Consensus 232 --dl~~l~~~a~~~a-~~r~~~~~~------------------------------------------------------~ 254 (611)
..-.++++|+... +........ .
T Consensus 387 Pdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (821)
T CHL00095 387 PDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKR 466 (821)
T ss_pred chHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 2334445444322 110000000 0
Q ss_pred ccccchhHHHHHHHHhccCCcccccccc-------cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCc
Q 007255 255 AGVLSVTMEDWRHARSVVGPSITRGVTV-------EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGA 327 (611)
Q Consensus 255 ~~~~~v~~ed~~~a~~~i~~~~~~~~~~-------~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (611)
.....++.+|+................. .....--+.|+||+.+.+.+...+......- . -..+|..++
T Consensus 467 ~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl---~-~~~~p~~~~ 542 (821)
T CHL00095 467 LEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGL---K-NPNRPIASF 542 (821)
T ss_pred ccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcc---c-CCCCCceEE
Confidence 0001123333322222111000000000 0000112457899999999988776321100 0 012334568
Q ss_pred ceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccc------------cccchHHHHHHHHHHHHhcCCcEEEEccc
Q 007255 328 LLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM------------YVGESEALLRNTFQRARLAAPSIIFFDEA 392 (611)
Q Consensus 328 Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~a~~~~p~il~iDei 392 (611)
||+||+|||||++|+++|..+ +.+++.++++++... |+|..+. ..+...++..+.+|++|||+
T Consensus 543 lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~--~~l~~~~~~~p~~VvllDei 620 (821)
T CHL00095 543 LFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEG--GQLTEAVRKKPYTVVLFDEI 620 (821)
T ss_pred EEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCcc--chHHHHHHhCCCeEEEECCh
Confidence 999999999999999999988 467888888876432 3332221 23445556566689999999
Q ss_pred ccccccCCCCCCCCcchhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCCcc----------------------
Q 007255 393 DVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE---------QAKGILVLAATNRPHA---------------------- 441 (611)
Q Consensus 393 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~~tn~~~~---------------------- 441 (611)
|.. +..+.+.|++.||... ...+++||+|||....
T Consensus 621 eka--------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~ 686 (821)
T CHL00095 621 EKA--------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQ 686 (821)
T ss_pred hhC--------------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCccccccccccc
Confidence 976 3668899999998531 1246899999985321
Q ss_pred ---------------cchhccCCCCccceeecCCCCHHHHHHHHHHHhcCC-------CCC---CcccHHHHHHhC--CC
Q 007255 442 ---------------IDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNM-------KVG---DDVDLRSIAEET--EL 494 (611)
Q Consensus 442 ---------------ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~-------~~~---~~~~~~~la~~~--~g 494 (611)
+.|.|+. |+|.+|.|.+.+.++..+|++..+..+ ++. ++...+.|++.. ..
T Consensus 687 ~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~ 764 (821)
T CHL00095 687 YKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPL 764 (821)
T ss_pred HHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCC
Confidence 1234555 999999999999999999998665432 111 122245555542 23
Q ss_pred CCHHHHHHHHHHHHHH
Q 007255 495 FTGAELEGLCREAGIV 510 (611)
Q Consensus 495 ~s~~~i~~~~~~a~~~ 510 (611)
|-.+.++.+++.-...
T Consensus 765 ~GAR~l~r~i~~~i~~ 780 (821)
T CHL00095 765 YGARPLRRAIMRLLED 780 (821)
T ss_pred CChhhHHHHHHHHHHH
Confidence 4456666666544433
No 64
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=7.7e-30 Score=276.06 Aligned_cols=242 Identities=39% Similarity=0.576 Sum_probs=209.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~ 95 (611)
.+|++++|++++++.+.+++.. +..++.+...|..+|+++||+||||||||++++++|.+++.+++.++++++...+.+
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g 130 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG 130 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhc
Confidence 4569999999999999998876 788888999999999999999999999999999999999999999999999888888
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 007255 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (611)
Q Consensus 96 ~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~ 171 (611)
.....++.+|+.+... .|+||||||+|.++..+.. ........+++++..++..... .+++||++||.
T Consensus 131 ~~~~~l~~~f~~a~~~----~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~----~~v~vI~aTn~ 202 (495)
T TIGR01241 131 VGASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN----TGVIVIAATNR 202 (495)
T ss_pred ccHHHHHHHHHHHHhc----CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC----CCeEEEEecCC
Confidence 8889999999988754 4999999999999876643 1233446677888888765432 35899999999
Q ss_pred cccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccc
Q 007255 172 VDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDA 251 (611)
Q Consensus 172 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~ 251 (611)
++.+|++++|++||+..++++.|+.++|.+|++.++.......+.++..++..+.||+++||.++|++|...+.++..
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~-- 280 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK-- 280 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC--
Confidence 999999999999999999999999999999999999888777778899999999999999999999999877765432
Q ss_pred cccccccchhHHHHHHHHhccCC
Q 007255 252 NECAGVLSVTMEDWRHARSVVGP 274 (611)
Q Consensus 252 ~~~~~~~~v~~ed~~~a~~~i~~ 274 (611)
..++.+|+..+...+..
T Consensus 281 ------~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 281 ------TEITMNDIEEAIDRVIA 297 (495)
T ss_pred ------CCCCHHHHHHHHHHHhc
Confidence 25888999988876543
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=2.5e-29 Score=265.37 Aligned_cols=223 Identities=31% Similarity=0.540 Sum_probs=180.2
Q ss_pred ccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------
Q 007255 8 MSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH------- 80 (611)
Q Consensus 8 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~------- 80 (611)
...++..| ++|+|++.+++.+.+.+..|+.+++.+...|+.+|+++||+||||||||++++++|++++.+
T Consensus 174 ~~~p~v~~---~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~ 250 (512)
T TIGR03689 174 EEVPDVTY---ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD 250 (512)
T ss_pred ecCCCCCH---HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC
Confidence 34455555 88999999999999999999999999999999999999999999999999999999998654
Q ss_pred ---EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC--CchhhHHHHHHHHHHHhcCCC
Q 007255 81 ---LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH--RREQDVRIASQLFTLMDSNKP 155 (611)
Q Consensus 81 ---~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~--~~~~~~~~~~~ll~~l~~~~~ 155 (611)
++.+..+++...+.|+++..++.+|..+......++|+||||||+|.++..++. .++....++.+|+..++....
T Consensus 251 ~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred ceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 556666778888999999999999999887665667999999999999987643 234455677889999987543
Q ss_pred CCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCC-CCCCcccHHHHHHhccCCccccHH
Q 007255 156 SKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV-PLDANVDLEAIATSCNGYVGADLE 234 (611)
Q Consensus 156 ~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~-~~~~~~~~~~la~~~~g~~~~dl~ 234 (611)
. +++++|++||+++.|||+++|+|||+.+|+|+.|+.++|.+||+.++... +. + .....+.|+++.++.
T Consensus 331 ~----~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l--~----~~l~~~~g~~~a~~~ 400 (512)
T TIGR03689 331 L----DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL--D----ADLAEFDGDREATAA 400 (512)
T ss_pred C----CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc--h----HHHHHhcCCCHHHHH
Confidence 2 36899999999999999999999999999999999999999999987642 22 1 112224455555555
Q ss_pred HHHHHHHHH
Q 007255 235 ALCREATMS 243 (611)
Q Consensus 235 ~l~~~a~~~ 243 (611)
.++++++..
T Consensus 401 al~~~av~~ 409 (512)
T TIGR03689 401 ALIQRAVDH 409 (512)
T ss_pred HHHHHHHHH
Confidence 555554433
No 66
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=2.4e-29 Score=262.20 Aligned_cols=247 Identities=40% Similarity=0.635 Sum_probs=206.8
Q ss_pred ccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEc
Q 007255 6 RIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVIS 85 (611)
Q Consensus 6 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 85 (611)
.+.+.++..| ++|+|++++++.|.+.+..|+.+++.+..+|+.+|.++||+||||||||++++++|++++.+++.+.
T Consensus 112 ~~~~~p~~~~---~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 112 EVEERPNVSY---EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred eeccCCCCCH---HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 3445555666 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCC-chhhHHHHHH---HHHHHhcCCCCCCCCC
Q 007255 86 PHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-REQDVRIASQ---LFTLMDSNKPSKTSVP 161 (611)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~-~~~~~~~~~~---ll~~l~~~~~~~~~~~ 161 (611)
++.+...+.+.....++.+|..+... .|+||||||+|.+...+... ...+...+.. ++..++... ..+
T Consensus 189 ~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~----~~~ 260 (364)
T TIGR01242 189 GSELVRKYIGEGARLVREIFELAKEK----APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD----PRG 260 (364)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHhc----CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC----CCC
Confidence 88888888888888888888876543 48999999999998654321 1122233334 444444332 123
Q ss_pred cEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHH
Q 007255 162 HVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREAT 241 (611)
Q Consensus 162 ~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~ 241 (611)
++.+|+|||.++.+|+++.+++||+..++|+.|+.++|.+|++.+.....+..+.++..++..++||+|+|+..+|++|.
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAG 340 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998888777788999999999999999999999999
Q ss_pred HHHhhhcccccccccccchhHHHHHHHHhc
Q 007255 242 MSAVKRSSDANECAGVLSVTMEDWRHARSV 271 (611)
Q Consensus 242 ~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~ 271 (611)
..++++.. ..++.+||..+...
T Consensus 341 ~~a~~~~~--------~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 341 MFAIREER--------DYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHhCC--------CccCHHHHHHHHHH
Confidence 99987643 35888999888664
No 67
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-30 Score=245.23 Aligned_cols=242 Identities=36% Similarity=0.590 Sum_probs=211.7
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~ 96 (611)
.+++++|.-.+..++.+.+..|+..+..+..+|+.+|.+++||||||||||.+++++|..++++++.+.++.+.+.+.|+
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGE 209 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGE 209 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccc
Q 007255 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (611)
Q Consensus 97 ~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l 175 (611)
+.+.+++.|..+.... ||||||||||.....+. .+...+.+++..|++++++...- ...++|-+|+|+|+++.|
T Consensus 210 saRlIRemf~yA~~~~----pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgf-d~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 210 SARLIRDMFRYAREVI----PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGF-DTLHRVKTIMATNRPDTL 284 (388)
T ss_pred HHHHHHHHHHHHhhhC----ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccc-hhcccccEEEecCCcccc
Confidence 9999999999998775 99999999999887653 23344567788888877754332 234578999999999999
Q ss_pred cHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccc
Q 007255 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECA 255 (611)
Q Consensus 176 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~ 255 (611)
+|+|.|+||+++.+.+|.|+...|..|++.+..........+.+.+.+..+|++|.++.+.|.+|...+.+...+
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~----- 359 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERD----- 359 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhH-----
Confidence 999999999999999999999999999998888888778888999999999999999999999998666554322
Q ss_pred cccchhHHHHHHHHhc
Q 007255 256 GVLSVTMEDWRHARSV 271 (611)
Q Consensus 256 ~~~~v~~ed~~~a~~~ 271 (611)
.+..+|+..+...
T Consensus 360 ---~vl~Ed~~k~vrk 372 (388)
T KOG0651|consen 360 ---EVLHEDFMKLVRK 372 (388)
T ss_pred ---HHhHHHHHHHHHH
Confidence 4556677665544
No 68
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.97 E-value=9.4e-28 Score=274.04 Aligned_cols=439 Identities=21% Similarity=0.273 Sum_probs=277.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~ 85 (611)
..++.++|+++.+..+.+.+.. +..++++|+||||||||++++.+|..+ +.+++.++
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 4678899999998888887643 244788999999999999999999986 56777777
Q ss_pred ccccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcE
Q 007255 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (611)
Q Consensus 86 ~~~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v 163 (611)
.+.+. ..+.|+.+..++.+++.+... ..++||||||+|.+.+.+...+. ....+.|...+. .+.+
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~---~~~~ILfIDEih~l~~~g~~~~~--~d~~~~Lk~~l~--------~g~i 303 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKS---EGQIILFIDELHTLVGAGKAEGA--MDAGNMLKPALA--------RGEL 303 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhc---CCCeEEEeccHHHhhcCCCCcch--hHHHHHhchhhh--------cCce
Confidence 76654 456788888899998877532 35889999999999865432221 223333333332 2358
Q ss_pred EEEEeecCcc-----cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-----cccHHHHHHhccCCccc--
Q 007255 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-----NVDLEAIATSCNGYVGA-- 231 (611)
Q Consensus 164 ~ii~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-----~~~~~~la~~~~g~~~~-- 231 (611)
.+|++|+..+ ..|+++.| ||. .+.++.|+.+++..|++.+...+.... +..+...+..+.+|...
T Consensus 304 ~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~ 380 (852)
T TIGR03346 304 HCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRF 380 (852)
T ss_pred EEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccC
Confidence 8999998864 57999999 996 689999999999999998766544332 23466667777666432
Q ss_pred ---cHHHHHHHHHHHHhhh-cccc---------------------ccccc----c-------------------------
Q 007255 232 ---DLEALCREATMSAVKR-SSDA---------------------NECAG----V------------------------- 257 (611)
Q Consensus 232 ---dl~~l~~~a~~~a~~r-~~~~---------------------~~~~~----~------------------------- 257 (611)
-.-.++++|+...... .... ..... .
T Consensus 381 lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (852)
T TIGR03346 381 LPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAE 460 (852)
T ss_pred CchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233444444221100 0000 00000 0
Q ss_pred -----------------------------------------------------------------cchhHHHHHHHHhcc
Q 007255 258 -----------------------------------------------------------------LSVTMEDWRHARSVV 272 (611)
Q Consensus 258 -----------------------------------------------------------------~~v~~ed~~~a~~~i 272 (611)
..++.+|+.......
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~ 540 (852)
T TIGR03346 461 KAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRW 540 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHh
Confidence 000000000000000
Q ss_pred CCcccccccccCCCc----------------ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCC
Q 007255 273 GPSITRGVTVEIPKV----------------TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCS 336 (611)
Q Consensus 273 ~~~~~~~~~~~~~~~----------------~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~G 336 (611)
..+|.. -...|+|++.+.+.+.+.+......- .-..+|...+||+||+|||
T Consensus 541 ---------tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl----~~~~~p~~~~Lf~Gp~GvG 607 (852)
T TIGR03346 541 ---------TGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGL----SDPNRPIGSFLFLGPTGVG 607 (852)
T ss_pred ---------cCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccC----CCCCCCCeEEEEEcCCCCC
Confidence 001111 12457888888888887776421000 0011344568999999999
Q ss_pred hHHHHHHHHHHh---CCcEEeecchhhccc------------cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCC
Q 007255 337 KTTLAKAAAHAA---EASFFSLSGAELYSM------------YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGG 401 (611)
Q Consensus 337 KT~la~ala~~~---~~~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~ 401 (611)
||++|+++|..+ +.+++.++++++... |+|..+. ..+....+..+.+|||||||+.+
T Consensus 608 Kt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~--g~l~~~v~~~p~~vlllDeieka------ 679 (852)
T TIGR03346 608 KTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEG--GQLTEAVRRKPYSVVLFDEVEKA------ 679 (852)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccc--cHHHHHHHcCCCcEEEEeccccC------
Confidence 999999999987 468888888776432 2222111 12334445555679999999866
Q ss_pred CCCCCcchhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCCcc-------------------------cchhcc
Q 007255 402 SSSTSITVGERLLSTLLTEMDGLE---------QAKGILVLAATNRPHA-------------------------IDAALM 447 (611)
Q Consensus 402 ~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~~tn~~~~-------------------------ld~al~ 447 (611)
+..+.+.|++.|+... .-.+++||+|||.... +.|.|+
T Consensus 680 --------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~ 751 (852)
T TIGR03346 680 --------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFL 751 (852)
T ss_pred --------CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHh
Confidence 3567888998886421 1245789999997321 224555
Q ss_pred CCCCccceeecCCCCHHHHHHHHHHHhcC-------CC--CC-CcccHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHh
Q 007255 448 RPGRFDLVLYVPPPDLEARHEILRVHTRN-------MK--VG-DDVDLRSIAEETE--LFTGAELEGLCREAGIVALRE 514 (611)
Q Consensus 448 r~gRf~~~i~~~~p~~~~r~~il~~~~~~-------~~--~~-~~~~~~~la~~~~--g~s~~~i~~~~~~a~~~a~~~ 514 (611)
. |++.++.|.+++.+...+|+...+.. .. +. ++..++.|++... .+..+.++++++......+-+
T Consensus 752 ~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 752 N--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred c--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 4 99999999999999999999865432 11 11 2233566666532 456678888777666555443
No 69
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-28 Score=265.27 Aligned_cols=406 Identities=20% Similarity=0.281 Sum_probs=273.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~ 85 (611)
-.++.++|.++.+.++.+.+.. +..+|-+|+|+||+|||.++..+|... +..++.++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 4678999999999999998754 345677889999999999999999876 45677777
Q ss_pred ccccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcE
Q 007255 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (611)
Q Consensus 86 ~~~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v 163 (611)
...+. ..+.|+.+.+++.+.++..... +.||||||+|.+.+.+...++ .....+.|--.+... .+
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~----~vILFIDEiHtiVGAG~~~G~-a~DAaNiLKPaLARG--------eL 300 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSK----NVILFIDEIHTIVGAGATEGG-AMDAANLLKPALARG--------EL 300 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCC----CeEEEEechhhhcCCCccccc-ccchhhhhHHHHhcC--------Ce
Confidence 77665 5688999999999999987542 789999999999987754333 334555555555542 46
Q ss_pred EEEEeecCcc-----cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-----ccHHHHHHhccCCcc---
Q 007255 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-----VDLEAIATSCNGYVG--- 230 (611)
Q Consensus 164 ~ii~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-----~~~~~la~~~~g~~~--- 230 (611)
.+|++|+..+ .-|++|.| ||. .+.+..|+.++-..|++..-..+..... .-+...+..++.|..
T Consensus 301 ~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~ 377 (786)
T COG0542 301 RCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRF 377 (786)
T ss_pred EEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCC
Confidence 7888887643 45899999 996 8999999999999999876655443322 124444444444321
Q ss_pred --ccHHHHHHHHHHHHhhhccccc---------------------cc--cccc----------------------chhHH
Q 007255 231 --ADLEALCREATMSAVKRSSDAN---------------------EC--AGVL----------------------SVTME 263 (611)
Q Consensus 231 --~dl~~l~~~a~~~a~~r~~~~~---------------------~~--~~~~----------------------~v~~e 263 (611)
.-.-.++++|+....-...... +. .... .++++
T Consensus 378 LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 457 (786)
T COG0542 378 LPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDED 457 (786)
T ss_pred CCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhhccCHH
Confidence 1123344444432211100000 00 0000 02223
Q ss_pred HHHHHHhccCCc-cccccc------ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCC----CCCCCcceeCC
Q 007255 264 DWRHARSVVGPS-ITRGVT------VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGI----SPVRGALLHGP 332 (611)
Q Consensus 264 d~~~a~~~i~~~-~~~~~~------~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~----~~~~~~Ll~Gp 332 (611)
++........-. ..+... ......--..|+||+++...+...+.. .+.|+ +|..++||.||
T Consensus 458 ~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GP 529 (786)
T COG0542 458 DIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGP 529 (786)
T ss_pred HHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCC
Confidence 333222211100 000000 001111124588999999988888764 23333 44567899999
Q ss_pred CCCChHHHHHHHHHHhC---CcEEeecchhhccc------------cccchHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 007255 333 PGCSKTTLAKAAAHAAE---ASFFSLSGAELYSM------------YVGESEALLRNTFQRARLAAPSIIFFDEADVVGA 397 (611)
Q Consensus 333 ~G~GKT~la~ala~~~~---~~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~ 397 (611)
+|+|||.+|+++|..+. ..++.++++++..+ |+|-.+.. .+-+..+..+.|||++|||++-
T Consensus 530 TGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG--~LTEaVRr~PySViLlDEIEKA-- 605 (786)
T COG0542 530 TGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGG--QLTEAVRRKPYSVILLDEIEKA-- 605 (786)
T ss_pred CcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecccc--chhHhhhcCCCeEEEechhhhc--
Confidence 99999999999999995 88999999998764 67665532 3455566677789999999854
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHhcCCCCC---------CCeEEEEecCCCc----------------------------
Q 007255 398 KRGGSSSTSITVGERLLSTLLTEMDGLEQA---------KGILVLAATNRPH---------------------------- 440 (611)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~---------~~~~vI~~tn~~~---------------------------- 440 (611)
+.++++-||+.||...-. .++++|+|||--.
T Consensus 606 ------------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~ 673 (786)
T COG0542 606 ------------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKK 673 (786)
T ss_pred ------------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHh
Confidence 578999999999864221 2588999998421
Q ss_pred ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcC
Q 007255 441 AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRN 476 (611)
Q Consensus 441 ~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~ 476 (611)
...|.|+. |+|.+|.|.+.+.+...+|+...+..
T Consensus 674 ~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 674 HFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred hCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence 13445555 99999999999999999999866543
No 70
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=4.4e-29 Score=272.36 Aligned_cols=240 Identities=37% Similarity=0.567 Sum_probs=205.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~ 95 (611)
..|++++|++++++.+.+.+.. +..++.+..+|...|+++||+||||||||++++++|.+++.+++.++++++...+.+
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g 258 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVG 258 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhh
Confidence 4679999999999999998765 777888899999999999999999999999999999999999999999998888888
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 007255 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (611)
Q Consensus 96 ~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~ 171 (611)
.....++.+|..+... .||||||||+|.+...++. .+......+.+|+..++.... ..++++|++||.
T Consensus 259 ~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~----~~~ViVIaaTN~ 330 (638)
T CHL00176 259 VGAARVRDLFKKAKEN----SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG----NKGVIVIAATNR 330 (638)
T ss_pred hhHHHHHHHHHHHhcC----CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC----CCCeeEEEecCc
Confidence 7778889999888654 5999999999999865432 223334566777777776543 236899999999
Q ss_pred cccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccc
Q 007255 172 VDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDA 251 (611)
Q Consensus 172 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~ 251 (611)
++.+|+++.|++||+..+.++.|+.++|.+|++.+++......+.++..++..+.||+++||.+++++|...+.++..
T Consensus 331 ~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~-- 408 (638)
T CHL00176 331 VDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK-- 408 (638)
T ss_pred hHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999999887777788899999999999999999999999887765432
Q ss_pred cccccccchhHHHHHHHHhcc
Q 007255 252 NECAGVLSVTMEDWRHARSVV 272 (611)
Q Consensus 252 ~~~~~~~~v~~ed~~~a~~~i 272 (611)
..++.+|+..+...+
T Consensus 409 ------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 ------ATITMKEIDTAIDRV 423 (638)
T ss_pred ------CCcCHHHHHHHHHHH
Confidence 257888998887654
No 71
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.96 E-value=3e-27 Score=268.59 Aligned_cols=445 Identities=19% Similarity=0.261 Sum_probs=265.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~ 85 (611)
..+++++|++..+..+.+++.. +..++++|+||||||||++++.+|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 4678999999988888887643 244789999999999999999999988 67788887
Q ss_pred ccccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcE
Q 007255 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (611)
Q Consensus 86 ~~~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v 163 (611)
.+.+. ..+.|+.+..++.+|+..... ..++||||||+|.+.+.+...+. ....+.|...+.. +.+
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~---~~~~ILfIDEih~l~~~~~~~~~--~d~~~~lkp~l~~--------g~l 308 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQ---EGNVILFIDELHTMVGAGKADGA--MDAGNMLKPALAR--------GEL 308 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHc---CCCeEEEEecHHHhccCCCCccc--hhHHHHhcchhhc--------CCC
Confidence 77755 456788889999999876532 35789999999999876543222 2334444444432 358
Q ss_pred EEEEeecCcc-----cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-----cccHHHHHHhccCCccc--
Q 007255 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-----NVDLEAIATSCNGYVGA-- 231 (611)
Q Consensus 164 ~ii~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-----~~~~~~la~~~~g~~~~-- 231 (611)
.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+...+.... +..+...+..+++|...
T Consensus 309 ~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~ 385 (857)
T PRK10865 309 HCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQ 385 (857)
T ss_pred eEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCC
Confidence 8999999866 58999999 996 689999999999999987765543222 22233333444433211
Q ss_pred ---cHHHHHHHHHHHH---------------------------hhhccccc---------c----cccc-----------
Q 007255 232 ---DLEALCREATMSA---------------------------VKRSSDAN---------E----CAGV----------- 257 (611)
Q Consensus 232 ---dl~~l~~~a~~~a---------------------------~~r~~~~~---------~----~~~~----------- 257 (611)
....+++.++... ..+..+.. . ....
T Consensus 386 ~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~ 465 (857)
T PRK10865 386 LPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAE 465 (857)
T ss_pred CChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111000 00000000 0 0000
Q ss_pred ---------------------------------------------------------------cchhHHHHHHHHhccCC
Q 007255 258 ---------------------------------------------------------------LSVTMEDWRHARSVVGP 274 (611)
Q Consensus 258 ---------------------------------------------------------------~~v~~ed~~~a~~~i~~ 274 (611)
..++.+|+.......+.
T Consensus 466 k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tg 545 (857)
T PRK10865 466 KASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTG 545 (857)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHC
Confidence 00000000000000000
Q ss_pred cc-ccccc------ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHH
Q 007255 275 SI-TRGVT------VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHA 347 (611)
Q Consensus 275 ~~-~~~~~------~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~ 347 (611)
.. .+... ......-...++|++.+.+.+...+....... . ..-+|...+||+||+|||||++|+++|..
T Consensus 546 ip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl---~-~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 546 IPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGL---S-DPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred CCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcc---c-CCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 00 00000 00001113457888888888887776311000 0 01123346899999999999999999998
Q ss_pred h---CCcEEeecchhhccc------------cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHH
Q 007255 348 A---EASFFSLSGAELYSM------------YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGER 412 (611)
Q Consensus 348 ~---~~~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~ 412 (611)
+ +.+++.++++++... |+|..+. ..+....+..+.+||+|||++.+ +..
T Consensus 622 l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~--g~l~~~v~~~p~~vLllDEieka--------------~~~ 685 (857)
T PRK10865 622 MFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEG--GYLTEAVRRRPYSVILLDEVEKA--------------HPD 685 (857)
T ss_pred hhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchh--HHHHHHHHhCCCCeEEEeehhhC--------------CHH
Confidence 7 457888888876432 2222111 11223334444589999999866 356
Q ss_pred HHHHHHHHhcCCC---------CCCCeEEEEecCCCc-------------------------ccchhccCCCCccceeec
Q 007255 413 LLSTLLTEMDGLE---------QAKGILVLAATNRPH-------------------------AIDAALMRPGRFDLVLYV 458 (611)
Q Consensus 413 ~~~~ll~~l~~~~---------~~~~~~vI~~tn~~~-------------------------~ld~al~r~gRf~~~i~~ 458 (611)
+.+.|++.|+... ...+.+||+|||... .+.|+|+. |++.++.|
T Consensus 686 v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF 763 (857)
T PRK10865 686 VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVF 763 (857)
T ss_pred HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEec
Confidence 7788888886321 123467888999731 13456776 99999999
Q ss_pred CCCCHHHHHHHHHHHhcCC-------CCC---CcccHHHHHHhC--CCCCHHHHHHHHHHHHHHH
Q 007255 459 PPPDLEARHEILRVHTRNM-------KVG---DDVDLRSIAEET--ELFTGAELEGLCREAGIVA 511 (611)
Q Consensus 459 ~~p~~~~r~~il~~~~~~~-------~~~---~~~~~~~la~~~--~g~s~~~i~~~~~~a~~~a 511 (611)
.+++.+....|++..+... .+. ++..++.|+... ..|-.+.++.+++.-....
T Consensus 764 ~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~ 828 (857)
T PRK10865 764 HPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENP 828 (857)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHH
Confidence 9999999999988665432 121 122244455432 1223556666666544443
No 72
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.9e-28 Score=245.20 Aligned_cols=256 Identities=35% Similarity=0.566 Sum_probs=211.7
Q ss_pred cccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccc
Q 007255 11 HNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH 90 (611)
Q Consensus 11 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~ 90 (611)
.++.| +++.|++.+++.+.+.+.+|...+..+..+. .+.+++||.||||+|||++++++|.+.+..|+.++++.+.
T Consensus 148 ~~v~~---~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 148 RNVGW---DDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred Ccccc---cCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 44667 8999999999999999999999888876422 3558999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 007255 91 KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST 169 (611)
Q Consensus 91 ~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~tt 169 (611)
+.|.|+.+..++.+|.-+... +|+|+||||+|.++..+. ...+...++..+++-.++..... ..++|++|++|
T Consensus 224 sK~~Ge~eK~vralf~vAr~~----qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~--~~drvlvigaT 297 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSL----QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSA--PDDRVLVIGAT 297 (428)
T ss_pred hhccChHHHHHHHHHHHHHhc----CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCC--CCCeEEEEecC
Confidence 999999999999999988755 699999999999998773 33455556777777666654332 33489999999
Q ss_pred cCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCC-CCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhc
Q 007255 170 NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVP-LDANVDLEAIATSCNGYVGADLEALCREATMSAVKRS 248 (611)
Q Consensus 170 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~-~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~ 248 (611)
|.|+.+|.+++| ||...+++|.|+.+.|..+|++++...+ ...+.++..+++.++||++.|+.++|.+|+..-.+..
T Consensus 298 N~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 298 NRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred CCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 999999999999 9999999999999999999999998773 2344679999999999999999999999987665544
Q ss_pred ccc-----cccccccchhHHHHHHHHhccCCcccc
Q 007255 249 SDA-----NECAGVLSVTMEDWRHARSVVGPSITR 278 (611)
Q Consensus 249 ~~~-----~~~~~~~~v~~ed~~~a~~~i~~~~~~ 278 (611)
... ........++..|+..+...+.+....
T Consensus 376 ~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~ 410 (428)
T KOG0740|consen 376 GGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSL 410 (428)
T ss_pred ccchhhhhcchhccCCCCcchHHHHHHhhccccCc
Confidence 431 123344566777788887777665543
No 73
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=7.6e-27 Score=230.85 Aligned_cols=207 Identities=21% Similarity=0.321 Sum_probs=162.7
Q ss_pred cccccc-CCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccc
Q 007255 16 KAEEAI-GGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (611)
Q Consensus 16 ~~~~~i-~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~ 94 (611)
..|+++ +|+--.+..+.+....... .....+|+++|.+++|+||||||||++++++|++++.+++.+++.++.+.+.
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~k--n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAK--NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHh--hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 556677 6666666666555543221 1223367899999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhh-hcCCCeEEEEccccccCCCCCCC-chhhHHHH-HHHHHHHhcCCC--------CCCCCCcE
Q 007255 95 GESEKALREAFSQASSHA-LSGKPSVVFIDEIDALCPRRDHR-REQDVRIA-SQLFTLMDSNKP--------SKTSVPHV 163 (611)
Q Consensus 95 ~~~~~~l~~~f~~~~~~~-~~~~~~il~IDeid~l~~~~~~~-~~~~~~~~-~~ll~~l~~~~~--------~~~~~~~v 163 (611)
|++++.++++|..|.... ..++||||||||||.+++.++.. .....+++ .+|++++|.... ......+|
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V 269 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRV 269 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCc
Confidence 999999999999997654 35679999999999999987532 22233444 789999886311 11234469
Q ss_pred EEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccC
Q 007255 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNG 227 (611)
Q Consensus 164 ~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g 227 (611)
+||+|||+++.|||+|+|+|||+.. +..|+.++|.+|++.+++...++ ..++..++..+.|
T Consensus 270 ~VIaTTNrpd~LDpALlRpGRfDk~--i~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 270 PIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred eEEEeCCCcccCCHhHcCCCCCCce--eCCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 9999999999999999999999975 46899999999999999887665 3567777776655
No 74
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=5.3e-27 Score=259.45 Aligned_cols=246 Identities=35% Similarity=0.544 Sum_probs=210.8
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc
Q 007255 12 NEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK 91 (611)
Q Consensus 12 ~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~ 91 (611)
......++++.|.+..++.+.+.+.. +..+..+..++...|++++|+||||||||+++++++++++.+++.++++++..
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 34456789999999999999998876 45566677788888999999999999999999999999999999999999888
Q ss_pred ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 007255 92 AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVA 167 (611)
Q Consensus 92 ~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ 167 (611)
.+.+.....++.+|..+... .||||||||+|.++..+.. +.......+++++..+|.... ...+++|+
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~----~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~----~~~vivIa 295 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKA----APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG----NEGIIVIA 295 (644)
T ss_pred hhhcccHHHHHHHHHHHHhc----CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC----CCCeeEEE
Confidence 88888888899999887644 5999999999999876542 223344677888888887543 23689999
Q ss_pred eecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhh
Q 007255 168 STNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKR 247 (611)
Q Consensus 168 ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r 247 (611)
+||+++.+|++++|++||++.+.++.|+.++|.+|++.++...++..+.++..++..+.||+|+||.++|++|...+.++
T Consensus 296 aTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 296 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred ecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998888889999999999999999999999999988764
Q ss_pred cccccccccccchhHHHHHHHHhccCC
Q 007255 248 SSDANECAGVLSVTMEDWRHARSVVGP 274 (611)
Q Consensus 248 ~~~~~~~~~~~~v~~ed~~~a~~~i~~ 274 (611)
.. ..++..|+..+...+.+
T Consensus 376 ~~--------~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 376 NK--------RVVSMVEFEKAKDKIMM 394 (644)
T ss_pred CC--------CcccHHHHHHHHHHHhc
Confidence 32 35788888888776644
No 75
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=2.9e-27 Score=270.25 Aligned_cols=214 Identities=17% Similarity=0.225 Sum_probs=172.3
Q ss_pred HHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccc----------cc------------------
Q 007255 44 QAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAH----------VG------------------ 95 (611)
Q Consensus 44 ~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~----------~~------------------ 95 (611)
...++|..+|++|||+||||||||++|+++|.+.+++++.++++++...+ .|
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 44678999999999999999999999999999999999999999887543 11
Q ss_pred -------------chH--HHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCC
Q 007255 96 -------------ESE--KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSV 160 (611)
Q Consensus 96 -------------~~~--~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 160 (611)
... ..++.+|+.|+... ||||||||||.++.... ....+.+|++.|++..... ..
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~S----PCIIFIDEIDaL~~~ds-----~~ltL~qLLneLDg~~~~~-s~ 1770 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMS----PCIIWIPNIHDLNVNES-----NYLSLGLLVNSLSRDCERC-ST 1770 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCC----CeEEEEEchhhcCCCcc-----ceehHHHHHHHhccccccC-CC
Confidence 111 23778899888664 99999999999987521 1123678888888653211 22
Q ss_pred CcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhh--cCCCCCCc-ccHHHHHHhccCCccccHHHHH
Q 007255 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYT--KKVPLDAN-VDLEAIATSCNGYVGADLEALC 237 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~--~~~~~~~~-~~~~~la~~~~g~~~~dl~~l~ 237 (611)
.+|+|||+||.|+.+|||++|||||+..|+++.|+..+|.+++..+. ++..+..+ .++..+|..|.||+|+||.++|
T Consensus 1771 ~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1771 RNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALT 1850 (2281)
T ss_pred CCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHH
Confidence 36999999999999999999999999999999999999999988653 34444433 5799999999999999999999
Q ss_pred HHHHHHHhhhcccccccccccchhHHHHHHHHhccCCc
Q 007255 238 REATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPS 275 (611)
Q Consensus 238 ~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~~ 275 (611)
++|+..++++... .++..++..|...+...
T Consensus 1851 NEAaliAirq~ks--------~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1851 NEALSISITQKKS--------IIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHHHHHHHHcCCC--------ccCHHHHHHHHHHHHhh
Confidence 9999999886543 47888888888766443
No 76
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.6e-23 Score=210.94 Aligned_cols=211 Identities=26% Similarity=0.328 Sum_probs=164.1
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~ 361 (611)
.+.| .+|+.++-..+.|+.+.+-+...++...-+++.|.++.+|+|||||||||||+++.|+|++++..++.++.++..
T Consensus 194 f~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~ 272 (457)
T KOG0743|consen 194 FPHP-STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK 272 (457)
T ss_pred CCCC-CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc
Confidence 3344 789999999999999999998889999999999999999999999999999999999999999999999887653
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCC---CCc-chhHHHHHHHHHHhcCCCCCC--CeEEEEe
Q 007255 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSS---TSI-TVGERLLSTLLTEMDGLEQAK--GILVLAA 435 (611)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~---~~~-~~~~~~~~~ll~~l~~~~~~~--~~~vI~~ 435 (611)
. .++ ++.++... ...+||+|+|||+-+..++.... ... ....-.++.||+.+||+.... ..|+|+|
T Consensus 273 ~----n~d--Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFT 344 (457)
T KOG0743|consen 273 L----DSD--LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFT 344 (457)
T ss_pred C----cHH--HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEe
Confidence 3 222 66666554 34569999999986643322221 111 123356889999999997665 6788889
Q ss_pred cCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCC--CCHHHHHHH
Q 007255 436 TNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETEL--FTGAELEGL 503 (611)
Q Consensus 436 tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g--~s~~~i~~~ 503 (611)
||.++.|||||+||||+|.+|+++..+.++-+.+++.++..-. +..-+.++.+..++ .|+|++...
T Consensus 345 TNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 345 TNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred cCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 9999999999999999999999999999999999998886432 12223333333332 588887543
No 77
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.8e-22 Score=193.70 Aligned_cols=232 Identities=22% Similarity=0.327 Sum_probs=171.5
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcccc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~ 364 (611)
++-.+++++-...+.+.+..+....-+. +....|-+++|||||||||||++|+-+|...|..+-.+.++++.. .
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNT-----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-l 423 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANT-----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-L 423 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccc-----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-c
Confidence 3445777877777777777765432111 112345578999999999999999999999999998888888753 2
Q ss_pred ccchHHHHHHHHHHHHhcCC-cEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccc
Q 007255 365 VGESEALLRNTFQRARLAAP-SIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAID 443 (611)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~p-~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld 443 (611)
-.+..-.|+++|+.++.... -+|||||+|.+..+|...-- +...+..+|+||-.-- ..+..++++.+||+|.++|
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktym--SEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYM--SEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhh--cHHHHHHHHHHHHHhc--ccccceEEEeccCCccchh
Confidence 23456689999999987654 48999999999988743221 2334556777765443 4667889999999999999
Q ss_pred hhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-----------------------Cc----ccHHHHHHhCCCCC
Q 007255 444 AALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-----------------------DD----VDLRSIAEETELFT 496 (611)
Q Consensus 444 ~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-----------------------~~----~~~~~la~~~~g~s 496 (611)
.|+-. |+|..|+||+|..++|..++..++.++-.. .. .-+.+.|+.|+|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99999 999999999999999999999887554211 01 12577899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 007255 497 GAELEGLCREAGIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 497 ~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
|++|..++-.....++-.. +..++..-|....
T Consensus 578 GREiakLva~vQAavYgse--dcvLd~~lf~e~v 609 (630)
T KOG0742|consen 578 GREIAKLVASVQAAVYGSE--DCVLDEALFDERV 609 (630)
T ss_pred HHHHHHHHHHHHHHHhccc--chhhHHHHHHHHH
Confidence 9999999887665555332 4455555555544
No 78
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=1.3e-21 Score=195.48 Aligned_cols=215 Identities=17% Similarity=0.269 Sum_probs=162.4
Q ss_pred ccccchhHHHHHHHHHhhccCCChhHHhhcCCCCC---CCcceeCCCCCChHHHHHHHHHHh-------CCcEEeecchh
Q 007255 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPV---RGALLHGPPGCSKTTLAKAAAHAA-------EASFFSLSGAE 359 (611)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~---~~~Ll~Gp~G~GKT~la~ala~~~-------~~~~~~~~~~~ 359 (611)
++++|++.+|+++.+++.+ +.....+.+.|..++ .+++|+||||||||++|+++|..+ ..+++.++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999999877 444566666776543 358999999999999999999886 23689999999
Q ss_pred hccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 007255 360 LYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRP 439 (611)
Q Consensus 360 ~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 439 (611)
+.+.|.|+++.....+++.+. ++||||||+|.+...++ ..+.....+..|+..|+. ..++++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~-----~~~~~~e~~~~L~~~me~--~~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN-----ERDYGSEAIEILLQVMEN--QRDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC-----ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcH
Confidence 999999988877777777653 46999999999864321 123457788999999984 45678888887643
Q ss_pred c-----ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHH----h--CCCCC-HHHHHHHHHH
Q 007255 440 H-----AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGD-DVDLRSIAE----E--TELFT-GAELEGLCRE 506 (611)
Q Consensus 440 ~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~----~--~~g~s-~~~i~~~~~~ 506 (611)
. ..+|++.+ ||+.+|.|+.|+.+++.+|++.++++....- +.....+.. . .+.|. ++++++++..
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 2 24689998 9999999999999999999998886654332 222222222 2 23454 8999999998
Q ss_pred HHHHHHHhhcc
Q 007255 507 AGIVALREDIS 517 (611)
Q Consensus 507 a~~~a~~~~~~ 517 (611)
+......|.+.
T Consensus 250 ~~~~~~~r~~~ 260 (287)
T CHL00181 250 ARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHc
Confidence 87776666543
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=2.6e-21 Score=192.43 Aligned_cols=224 Identities=17% Similarity=0.274 Sum_probs=161.7
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCC---CCCcceeCCCCCChHHHHHHHHHHh-------CCcEEeecc
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISP---VRGALLHGPPGCSKTTLAKAAAHAA-------EASFFSLSG 357 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~---~~~~Ll~Gp~G~GKT~la~ala~~~-------~~~~~~~~~ 357 (611)
.+++++|++.+|+++.+.+.++... ....+.|..+ ..+++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 3678999999999999998875443 3333445543 3468999999999999999999875 347889999
Q ss_pred hhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 007255 358 AELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATN 437 (611)
Q Consensus 358 ~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn 437 (611)
+++.++|.|+....++.+|+.+. ++||||||+|.|... .........+..|+..|+. ....+++|++++
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~--~~~~~~vila~~ 151 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMED--NRNEFVLILAGY 151 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhc--cCCCEEEEecCC
Confidence 99999999999988888887764 469999999998531 1112345678889999974 355667776655
Q ss_pred CCc-----ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHh-------CC--CCCHHHHHH
Q 007255 438 RPH-----AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEE-------TE--LFTGAELEG 502 (611)
Q Consensus 438 ~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~-------~~--g~s~~~i~~ 502 (611)
..+ .++|++.+ ||+..|.||.++.+++.+|++.++...... ++..+..+++. .. .-+++.+++
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n 229 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRN 229 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHH
Confidence 332 36789998 999999999999999999999887765443 22224444321 11 125678888
Q ss_pred HHHHHHHHHHHhhcccccccHHH
Q 007255 503 LCREAGIVALREDISATAVRNRH 525 (611)
Q Consensus 503 ~~~~a~~~a~~~~~~~~~i~~~~ 525 (611)
++..|......+.+.....+.++
T Consensus 230 ~~e~a~~~~~~r~~~~~~~~~~~ 252 (261)
T TIGR02881 230 IIEKAIRRQAVRLLDKSDYSKED 252 (261)
T ss_pred HHHHHHHHHHHHHhccCCCCHHH
Confidence 88877766665554444444433
No 80
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=4.4e-21 Score=190.81 Aligned_cols=217 Identities=19% Similarity=0.244 Sum_probs=158.4
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCC---CceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEE
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKW---PRGLLLYGPPGTGKTSLVRAVVREC-------GAHLTVI 84 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~---~~~iLl~Gp~GtGKT~la~~la~~l-------~~~~~~v 84 (611)
|..+++++|++++|+.|.+++..+... ....+.|... ..+++|+||||||||++|+++|+.+ ..+++.+
T Consensus 2 ~~~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~ 80 (261)
T TIGR02881 2 ERELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV 80 (261)
T ss_pred hHHHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe
Confidence 567899999999999999988775443 3334456653 3689999999999999999999875 2367888
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEE
Q 007255 85 SPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (611)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ 164 (611)
+++++...+.|++...+.++|+.+. ++||||||+|.|.... ......+.+..++..++... .+++
T Consensus 81 ~~~~l~~~~~g~~~~~~~~~~~~a~-------~~VL~IDE~~~L~~~~--~~~~~~~~i~~Ll~~~e~~~------~~~~ 145 (261)
T TIGR02881 81 ERADLVGEYIGHTAQKTREVIKKAL-------GGVLFIDEAYSLARGG--EKDFGKEAIDTLVKGMEDNR------NEFV 145 (261)
T ss_pred cHHHhhhhhccchHHHHHHHHHhcc-------CCEEEEechhhhccCC--ccchHHHHHHHHHHHHhccC------CCEE
Confidence 8889988888988888888887763 5799999999997422 12233456778888887642 2355
Q ss_pred EEEeecCc-----ccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCccc-HHHHHHh---------ccCCc
Q 007255 165 VVASTNRV-----DAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATS---------CNGYV 229 (611)
Q Consensus 165 ii~ttn~~-----~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-~~~la~~---------~~g~~ 229 (611)
+|+++.+. ..++|++++ ||...+.||+|+.+++.+|++.++.......+.+ +..++.. ...-+
T Consensus 146 vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn 223 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSN 223 (261)
T ss_pred EEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCch
Confidence 66554432 246899998 9988899999999999999999987654432222 3333221 11235
Q ss_pred cccHHHHHHHHHHHHhhhcc
Q 007255 230 GADLEALCREATMSAVKRSS 249 (611)
Q Consensus 230 ~~dl~~l~~~a~~~a~~r~~ 249 (611)
++.+.+++..|......|..
T Consensus 224 ~R~~~n~~e~a~~~~~~r~~ 243 (261)
T TIGR02881 224 ARYVRNIIEKAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 78888888888877665543
No 81
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=9e-21 Score=189.52 Aligned_cols=215 Identities=21% Similarity=0.299 Sum_probs=159.5
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCC---ceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEEcccc
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWP---RGLLLYGPPGTGKTSLVRAVVRECG-------AHLTVISPHS 88 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~---~~iLl~Gp~GtGKT~la~~la~~l~-------~~~~~v~~~~ 88 (611)
++++|++++|++|.+++.. +...+...+.|..++ .+++|+||||||||++|+++|+.+. .+++.++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999998766 334466666777543 5699999999999999999998762 3588999888
Q ss_pred cccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 007255 89 VHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS 168 (611)
Q Consensus 89 ~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~t 168 (611)
+...+.|.+......+++.+. ++||||||+|.+...+ +..+...+.+..|+..|+... .++++|++
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~-------ggVLfIDE~~~l~~~~-~~~~~~~e~~~~L~~~me~~~------~~~~vI~a 167 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM-------GGVLFIDEAYYLYKPD-NERDYGSEAIEILLQVMENQR------DDLVVIFA 167 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc-------CCEEEEEccchhccCC-CccchHHHHHHHHHHHHhcCC------CCEEEEEe
Confidence 888888888777777777653 5799999999986543 223345678889999998642 24677777
Q ss_pred ecCcc-----cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCccc-H----HHHHHhc--cCC-ccccHHH
Q 007255 169 TNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-L----EAIATSC--NGY-VGADLEA 235 (611)
Q Consensus 169 tn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-~----~~la~~~--~g~-~~~dl~~ 235 (611)
++... .++|++++ ||...|+|++|+.+++.+|+..++.......+.+ . ..+.... ..+ +++++++
T Consensus 168 g~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn 245 (287)
T CHL00181 168 GYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRN 245 (287)
T ss_pred CCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 65421 34699998 9999999999999999999999987654332211 2 2222222 223 3799999
Q ss_pred HHHHHHHHHhhhccc
Q 007255 236 LCREATMSAVKRSSD 250 (611)
Q Consensus 236 l~~~a~~~a~~r~~~ 250 (611)
+++.+......|...
T Consensus 246 ~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 246 ALDRARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999988877666543
No 82
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5e-22 Score=189.96 Aligned_cols=238 Identities=28% Similarity=0.352 Sum_probs=176.6
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhc-CCCCCCCcceeCCCCCChHHHHHHHHHHh---------CCcEEeecc
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRL-GISPVRGALLHGPPGCSKTTLAKAAAHAA---------EASFFSLSG 357 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---------~~~~~~~~~ 357 (611)
-|+.++=-..+|+.|..+....+...+.--.- -+...+-+|++||||||||+|++|+|+.+ ...+++++.
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 36777666778888888776544332211100 12334668999999999999999999988 456899999
Q ss_pred hhhccccccchHHHHHHHHHHHHhcC---Cc--EEEEcccccccccCC-CCCCCCcchhHHHHHHHHHHhcCCCCCCCeE
Q 007255 358 AELYSMYVGESEALLRNTFQRARLAA---PS--IIFFDEADVVGAKRG-GSSSTSITVGERLLSTLLTEMDGLEQAKGIL 431 (611)
Q Consensus 358 ~~~~~~~~g~~~~~~~~~~~~a~~~~---p~--il~iDeid~l~~~~~-~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 431 (611)
..+.++|.+++.+.+..+|+...... .+ .++|||+++++..|. ..+..+....-|++|++|.+||.+...++++
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 99999999999999999999987643 22 667999999998883 3333333445699999999999999999999
Q ss_pred EEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCC-----CCCC-------------cccHHHHHHh-C
Q 007255 432 VLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNM-----KVGD-------------DVDLRSIAEE-T 492 (611)
Q Consensus 432 vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~-----~~~~-------------~~~~~~la~~-~ 492 (611)
+++|+|-.+.||.|+.. |-|.+.++++|+...|..|++.....+ -... +.....+.+. +
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999999 999999999999999999998554221 1111 1112334444 3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHh
Q 007255 493 ELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKD 531 (611)
Q Consensus 493 ~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~ 531 (611)
.|.||+.|+.+=-.|.... ...-+++..+|..++.
T Consensus 378 ~gLSGRtlrkLP~Laha~y----~~~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLAHAEY----FRTFTVDLSNFLLALL 412 (423)
T ss_pred cCCccchHhhhhHHHHHhc----cCCCccChHHHHHHHH
Confidence 7999998887655443322 2335688888887763
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=1.4e-21 Score=173.77 Aligned_cols=130 Identities=42% Similarity=0.672 Sum_probs=116.2
Q ss_pred cceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccccccchHHHHHHHHHHHHhcC-CcEEEEcccccccccCCCCCCC
Q 007255 327 ALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAA-PSIIFFDEADVVGAKRGGSSST 405 (611)
Q Consensus 327 ~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~~~ 405 (611)
+||+||||||||++|+.+|+.++.+++.++++++.+.+.++....+..+|..++... |+||||||+|.+.++. ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 589999999999999999999999999999999999999999999999999999888 9999999999999886 222
Q ss_pred CcchhHHHHHHHHHHhcCCCCC-CCeEEEEecCCCcccchhccCCCCccceeecCC
Q 007255 406 SITVGERLLSTLLTEMDGLEQA-KGILVLAATNRPHAIDAALMRPGRFDLVLYVPP 460 (611)
Q Consensus 406 ~~~~~~~~~~~ll~~l~~~~~~-~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~ 460 (611)
.......+.+.|+..++..... .++++|+|||.++.++++++| +||+..|++|+
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3455678899999999976654 569999999999999999998 89999999874
No 84
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=8.4e-21 Score=190.02 Aligned_cols=213 Identities=17% Similarity=0.255 Sum_probs=164.0
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHhhcCCCC---CCCcceeCCCCCChHHHHHHHHHHhC-------CcEEeecchhh
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISP---VRGALLHGPPGCSKTTLAKAAAHAAE-------ASFFSLSGAEL 360 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~---~~~~Ll~Gp~G~GKT~la~ala~~~~-------~~~~~~~~~~~ 360 (611)
+++|++++|+++.+.+.+ +..+..+.+.|..+ ..+++|+||||||||++|+++|..+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999999887 55666777777764 45899999999999999999998872 37999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCC-
Q 007255 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRP- 439 (611)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~- 439 (611)
.+.|.|.++..+..+|+.+. +++|||||++.+.+.+. .......+.+.|+..|+. ...++++|++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMEN--QRDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHH
Confidence 99999998888888887763 46999999999864321 123456788899999983 45678888887653
Q ss_pred -c---ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHh------CCCC-CHHHHHHHHHHH
Q 007255 440 -H---AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEE------TELF-TGAELEGLCREA 507 (611)
Q Consensus 440 -~---~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~------~~g~-s~~~i~~~~~~a 507 (611)
+ .++|++.+ ||+..|.||.++.+++..|++.++++.... ++..+..+... .+.+ +++++++++..+
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 2 25899999 999999999999999999999888775433 22223344332 1222 578999999988
Q ss_pred HHHHHHhhc
Q 007255 508 GIVALREDI 516 (611)
Q Consensus 508 ~~~a~~~~~ 516 (611)
......+..
T Consensus 250 ~~~~~~r~~ 258 (284)
T TIGR02880 250 RLRQANRLF 258 (284)
T ss_pred HHHHHHHHh
Confidence 776665543
No 85
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.86 E-value=4e-21 Score=216.89 Aligned_cols=168 Identities=23% Similarity=0.295 Sum_probs=135.8
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEee
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSL 355 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~~ 355 (611)
+-.+++++|.++....+.+.+.. +...+++|+||||||||++|+++|..+ +..++.+
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 44688899999888877776653 345689999999999999999999987 7889999
Q ss_pred cchhhc--cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEE
Q 007255 356 SGAELY--SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVL 433 (611)
Q Consensus 356 ~~~~~~--~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI 433 (611)
+.+.+. .+|.|+.+..++.+|+.++...|+||||||+|.+++.+...+ ++ ....+.|...| ..+.+.+|
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~-~~----~~~~~~L~~~l----~~g~i~~I 315 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSG-GS----MDASNLLKPAL----SSGKLRCI 315 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCC-cc----HHHHHHHHHHH----hCCCeEEE
Confidence 999887 489999999999999999877889999999999987653211 11 12334444444 35789999
Q ss_pred EecCCCc-----ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCC
Q 007255 434 AATNRPH-----AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMK 478 (611)
Q Consensus 434 ~~tn~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~ 478 (611)
|+||..+ ++|+++.| ||+ .|.++.|+.+++.+|++.....+.
T Consensus 316 gaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e 362 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYE 362 (731)
T ss_pred EecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999743 57999999 998 799999999999999997665543
No 86
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=1.6e-20 Score=187.99 Aligned_cols=218 Identities=21% Similarity=0.272 Sum_probs=163.0
Q ss_pred cccc-ccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCC---CceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEE
Q 007255 16 KAEE-AIGGNRAAVEALRELITFPLLYSSQAQKLGLKW---PRGLLLYGPPGTGKTSLVRAVVRECG-------AHLTVI 84 (611)
Q Consensus 16 ~~~~-~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~---~~~iLl~Gp~GtGKT~la~~la~~l~-------~~~~~v 84 (611)
..++ +++|++++|+.|.+++.. ...++.+.+.|+.. ..+++|+||||||||++|+++|+.+. .+++.+
T Consensus 18 ~~l~~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v 96 (284)
T TIGR02880 18 DQLDRELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV 96 (284)
T ss_pred HHHHHhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe
Confidence 3444 799999999999998877 45566667778764 35899999999999999999988763 368899
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEE
Q 007255 85 SPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (611)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ 164 (611)
++.++...+.|.+...+..+|+.+. +++|||||++.|.+..+ ......+.+..|+..|+... .+++
T Consensus 97 ~~~~l~~~~~g~~~~~~~~~~~~a~-------~gvL~iDEi~~L~~~~~-~~~~~~~~~~~Ll~~le~~~------~~~~ 162 (284)
T TIGR02880 97 TRDDLVGQYIGHTAPKTKEILKRAM-------GGVLFIDEAYYLYRPDN-ERDYGQEAIEILLQVMENQR------DDLV 162 (284)
T ss_pred cHHHHhHhhcccchHHHHHHHHHcc-------CcEEEEechhhhccCCC-ccchHHHHHHHHHHHHhcCC------CCEE
Confidence 9888888888888777778887764 67999999999864332 22345577888999998642 2567
Q ss_pred EEEeecCc--c---cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCccc-HHHHHHhc------c-CCccc
Q 007255 165 VVASTNRV--D---AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSC------N-GYVGA 231 (611)
Q Consensus 165 ii~ttn~~--~---~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-~~~la~~~------~-g~~~~ 231 (611)
+|++++.. + .++|++.+ ||...|+||+|+.+++..|++.++......-+.+ ...+.... + --+++
T Consensus 163 vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R 240 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANAR 240 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHH
Confidence 77776542 2 35899999 9999999999999999999999988754332222 33333321 1 13578
Q ss_pred cHHHHHHHHHHHHhhhccc
Q 007255 232 DLEALCREATMSAVKRSSD 250 (611)
Q Consensus 232 dl~~l~~~a~~~a~~r~~~ 250 (611)
.+++++..+......|...
T Consensus 241 ~lrn~ve~~~~~~~~r~~~ 259 (284)
T TIGR02880 241 SIRNAIDRARLRQANRLFC 259 (284)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999998877776543
No 87
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.85 E-value=9e-21 Score=176.47 Aligned_cols=193 Identities=23% Similarity=0.289 Sum_probs=132.5
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
...+.+++|++||++++..+.-++..... ...+..++|||||||+|||++|+.+|++++.++..++++.+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~--------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKK--------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHC--------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHh--------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 34566899999999999998776653211 1133457999999999999999999999999999888765432
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--------CC-------
Q 007255 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--------QA------- 427 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~------- 427 (611)
.++ +..++... ....||||||||.+ ++.....|+..|+... +.
T Consensus 89 --~~d----l~~il~~l--~~~~ILFIDEIHRl--------------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 89 --AGD----LAAILTNL--KEGDILFIDEIHRL--------------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp --CHH----HHHHHHT----TT-EEEECTCCC----------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred --HHH----HHHHHHhc--CCCcEEEEechhhc--------------cHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 122 33333333 34569999999988 3556677888887531 11
Q ss_pred -CCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHhCCCCCHHHHHHHHH
Q 007255 428 -KGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDD-VDLRSIAEETELFTGAELEGLCR 505 (611)
Q Consensus 428 -~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~s~~~i~~~~~ 505 (611)
.++.+||||++...+.++|+. ||.....+..++.++..+|++.......+.-+ ....++|..+.| |++-..++++
T Consensus 147 l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred CCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 258899999999999999998 99988899999999999999977777666533 447899999999 8888888877
Q ss_pred HHH
Q 007255 506 EAG 508 (611)
Q Consensus 506 ~a~ 508 (611)
.+.
T Consensus 224 rvr 226 (233)
T PF05496_consen 224 RVR 226 (233)
T ss_dssp HHC
T ss_pred HHH
Confidence 543
No 88
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7e-20 Score=199.00 Aligned_cols=215 Identities=20% Similarity=0.243 Sum_probs=186.8
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEee
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSL 355 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~~ 355 (611)
.-.++-++|.+.-.+++.+.+.. +..++-+|+|+||+|||+++..+|... +..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 34577789998888888887764 556788999999999999999999887 6789999
Q ss_pred cchhhcc--ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEE
Q 007255 356 SGAELYS--MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVL 433 (611)
Q Consensus 356 ~~~~~~~--~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI 433 (611)
+.+.+.. +|.|++|++++.+.+.++...+.||||||+|++.|..+..++ +++..+-++..| ..+.+-+|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~DAaNiLKPaL--------ARGeL~~I 303 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMDAANLLKPAL--------ARGELRCI 303 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-ccchhhhhHHHH--------hcCCeEEE
Confidence 9999886 799999999999999999888999999999999988655443 566666666665 77889999
Q ss_pred EecCCCc-----ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHH
Q 007255 434 AATNRPH-----AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAG 508 (611)
Q Consensus 434 ~~tn~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~ 508 (611)
|+|+.-+ +.|+||.| ||+ .|++..|+.++...|++....++..++.+. |+...|.+++..+.
T Consensus 304 GATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~----------i~D~Al~aAv~LS~ 370 (786)
T COG0542 304 GATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVR----------ITDEALVAAVTLSD 370 (786)
T ss_pred EeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCce----------ecHHHHHHHHHHHH
Confidence 9998655 57999999 999 899999999999999999999999888887 88999999999999
Q ss_pred HHHHHhhcccccccHHHHHHHHhhcCC
Q 007255 509 IVALREDISATAVRNRHFQTVKDSLKP 535 (611)
Q Consensus 509 ~~a~~~~~~~~~i~~~~~~~~l~~~~~ 535 (611)
.+.-.++++++.|+.-|...+..+++.
T Consensus 371 RYI~dR~LPDKAIDLiDeA~a~~~l~~ 397 (786)
T COG0542 371 RYIPDRFLPDKAIDLLDEAGARVRLEI 397 (786)
T ss_pred hhcccCCCCchHHHHHHHHHHHHHhcc
Confidence 999999999999999999888877753
No 89
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.83 E-value=3.7e-20 Score=205.98 Aligned_cols=221 Identities=20% Similarity=0.237 Sum_probs=161.7
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEeecc
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSLSG 357 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~~~~ 357 (611)
.++.++|.+...+.+.+.+.. ....++||+||||||||++|+++|..+ ++.++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 466788988888888776653 334678999999999999999999875 677888888
Q ss_pred hhhc--cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEe
Q 007255 358 AELY--SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAA 435 (611)
Q Consensus 358 ~~~~--~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~ 435 (611)
+.+. .+|.|+.+..++.+++.++...++||||||+|.|++.++..+ .+ ..+.+.|...+ ..+++.+||+
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~-g~----~d~~nlLkp~L----~~g~i~vIgA 321 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-GQ----VDAANLIKPLL----SSGKIRVIGS 321 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC-cH----HHHHHHHHHHH----hCCCeEEEec
Confidence 7776 468999999999999999888889999999999987753211 11 22223332233 5678999999
Q ss_pred cCCCc-----ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHH-----HhC-----CCCCHHHH
Q 007255 436 TNRPH-----AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIA-----EET-----ELFTGAEL 500 (611)
Q Consensus 436 tn~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la-----~~~-----~g~s~~~i 500 (611)
||.++ ..|++|.| ||+ .|.++.|+.+++..|++....++...+++.+...| ..+ +-+-+...
T Consensus 322 Tt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 99875 57999999 997 89999999999999999988888777776643322 222 23445577
Q ss_pred HHHHHHHHHHHHHhh--cccccccHHHHHHHHhhc
Q 007255 501 EGLCREAGIVALRED--ISATAVRNRHFQTVKDSL 533 (611)
Q Consensus 501 ~~~~~~a~~~a~~~~--~~~~~i~~~~~~~~l~~~ 533 (611)
..++.+|+....... .....++..|+..++.+.
T Consensus 399 idlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 399 IDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_pred HHHHHHHHHhhccCcccccccccChhhHHHHHHHH
Confidence 777777765432111 012346666777666554
No 90
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.82 E-value=1.7e-19 Score=167.94 Aligned_cols=184 Identities=24% Similarity=0.361 Sum_probs=123.1
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccc
Q 007255 13 EKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA 92 (611)
Q Consensus 13 ~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~ 92 (611)
...+.|++++||++++..+.-++...... -....|+|||||||+||||+|+.+|++++.++..+++..+..
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k- 88 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK- 88 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-
Confidence 34578999999999999988777543221 124469999999999999999999999999999888755422
Q ss_pred cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----C-------CCC
Q 007255 93 HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----K-------TSV 160 (611)
Q Consensus 93 ~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~-------~~~ 160 (611)
. ..+..++... .++.||||||||.+.. ..+..|+..|+.+.-+ . ...
T Consensus 89 -~----~dl~~il~~l------~~~~ILFIDEIHRlnk----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 89 -A----GDLAAILTNL------KEGDILFIDEIHRLNK----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp -C----HHHHHHHHT--------TT-EEEECTCCC--H----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred -H----HHHHHHHHhc------CCCcEEEEechhhccH----------HHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 1 1222333222 2467999999999854 5678889999874321 0 123
Q ss_pred CcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcc-cHHHHHHhccCC
Q 007255 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGY 228 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~~~~la~~~~g~ 228 (611)
+++.+|++|+....++++++. ||.....+..++.++..+|++.......+.-+. ...++|..+.|-
T Consensus 148 ~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt 214 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT 214 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS
T ss_pred CCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC
Confidence 568999999999999999998 999888999999999999999887776665433 367778777764
No 91
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.81 E-value=1.2e-18 Score=164.80 Aligned_cols=217 Identities=21% Similarity=0.249 Sum_probs=164.9
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
...+.+|++.+|++.+|++|.-++...-. .....-++|||||||.|||+||..+|+++|.++-..+++-+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~--------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKK--------RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHh--------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 34456899999999999999988874322 2344568999999999999999999999999998888776644
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCC--------CCC-------
Q 007255 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL--------EQA------- 427 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--------~~~------- 427 (611)
.|+ +-.++... ...+|+||||||.+.+ .+-..|...|+.+ .+.
T Consensus 91 --~gD----laaiLt~L--e~~DVLFIDEIHrl~~--------------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ld 148 (332)
T COG2255 91 --PGD----LAAILTNL--EEGDVLFIDEIHRLSP--------------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLD 148 (332)
T ss_pred --hhh----HHHHHhcC--CcCCeEEEehhhhcCh--------------hHHHHhhhhhhheeEEEEEccCCccceEecc
Confidence 333 33333332 4557999999999832 2233444556543 111
Q ss_pred -CCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHhCCCCCHHHHHHHHH
Q 007255 428 -KGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDD-VDLRSIAEETELFTGAELEGLCR 505 (611)
Q Consensus 428 -~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~s~~~i~~~~~ 505 (611)
..+.+||+|++...+..+|+. ||..+..+..++.++..+|+....+.+.+.-+ ....++|+++.| |++-...+++
T Consensus 149 LppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLr 225 (332)
T COG2255 149 LPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLR 225 (332)
T ss_pred CCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHH
Confidence 257899999999999999998 99999999999999999999988877777643 457899999999 8998899999
Q ss_pred HHHHHHHHhhcccccccHHHHHHHHhhcC
Q 007255 506 EAGIVALREDISATAVRNRHFQTVKDSLK 534 (611)
Q Consensus 506 ~a~~~a~~~~~~~~~i~~~~~~~~l~~~~ 534 (611)
.+...|..+. ...|+..-...++..+.
T Consensus 226 RVRDfa~V~~--~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 226 RVRDFAQVKG--DGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHHHHHhc--CCcccHHHHHHHHHHhC
Confidence 8888887553 34566666666666654
No 92
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.81 E-value=3.5e-19 Score=202.19 Aligned_cols=183 Identities=22% Similarity=0.260 Sum_probs=138.9
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEee
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSL 355 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~~ 355 (611)
+-.+++++|+++..+.+.+.+.. +...+++|+||||||||++|+++|..+ +..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 45688999999987777666543 344689999999999999999999986 3568888
Q ss_pred cchhhcc--ccccchHHHHHHHHHHHHh-cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEE
Q 007255 356 SGAELYS--MYVGESEALLRNTFQRARL-AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILV 432 (611)
Q Consensus 356 ~~~~~~~--~~~g~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 432 (611)
+.+.+.. .|.|+.+..++.+++.++. ..+.||||||+|.+.+.++..+ +.+ ..+.|+..| ..+.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~--~~d----~~n~Lkp~l----~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG--QGD----AANLLKPAL----ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc--ccc----HHHHhhHHh----hCCCeEE
Confidence 8887763 6899999999999999875 4578999999999987754322 222 223333333 5678999
Q ss_pred EEecCCCc-----ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCccc-----HHHHHHhCCC
Q 007255 433 LAATNRPH-----AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVD-----LRSIAEETEL 494 (611)
Q Consensus 433 I~~tn~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-----~~~la~~~~g 494 (611)
||||+..+ .+|+||.| ||+ .|.++.|+.+++..||+...+.+...+.+. +..++..+.+
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 99999754 58999999 997 899999999999999987776665444333 4444444443
No 93
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.81 E-value=4.5e-19 Score=201.99 Aligned_cols=173 Identities=21% Similarity=0.298 Sum_probs=137.3
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEee
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSL 355 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~~ 355 (611)
+-.++.++|.+...+.+.+.+.. +...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 34678899999887777776653 345689999999999999999999988 7889999
Q ss_pred cchhhc--cccccchHHHHHHHHHHHHh-cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEE
Q 007255 356 SGAELY--SMYVGESEALLRNTFQRARL-AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILV 432 (611)
Q Consensus 356 ~~~~~~--~~~~g~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 432 (611)
+.+.+. .+|.|+.+..++.+|+.+.. ..++||||||+|.+.+.++.. ++.+. .+.|...+ ..+.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~--~~~d~----~~~lkp~l----~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD--GAMDA----GNMLKPAL----ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc--cchhH----HHHhcchh----hcCCCeE
Confidence 888876 46899999999999998654 568899999999998775422 22222 22232222 5678999
Q ss_pred EEecCCCc-----ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCccc
Q 007255 433 LAATNRPH-----AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVD 484 (611)
Q Consensus 433 I~~tn~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~ 484 (611)
||+|+.++ ++|+|+.| ||+ .|.++.|+.+++..|++.....+...+.+.
T Consensus 311 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~ 364 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQ 364 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCC
Confidence 99999877 48999999 998 688999999999999998877776655443
No 94
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.7e-18 Score=174.92 Aligned_cols=181 Identities=25% Similarity=0.345 Sum_probs=149.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~ 95 (611)
.+|+.++=-.+.|+.|.+=+.......+.+.+.|..+.++.|||||||||||+++.|+|+.++..++-++.++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n--- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD--- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc---
Confidence 67899999999999999999888999999999999999999999999999999999999999999988887665331
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCch--------hhHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 007255 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRRE--------QDVRIASQLFTLMDSNKPSKTSVPHVVVVA 167 (611)
Q Consensus 96 ~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~--------~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ 167 (611)
..++.++-... ..+||+|+|||+-+..++...+ ...-.++.|++++|+....+. ..-++|.
T Consensus 275 ---~dLr~LL~~t~------~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg--~ERIivF 343 (457)
T KOG0743|consen 275 ---SDLRHLLLATP------NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG--DERIIVF 343 (457)
T ss_pred ---HHHHHHHHhCC------CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC--CceEEEE
Confidence 12666655443 3679999999987653321111 122456889999998766553 2468899
Q ss_pred eecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCC
Q 007255 168 STNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV 210 (611)
Q Consensus 168 ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~ 210 (611)
|||..+.|||||.||||++.+|++..-+......+++.++..-
T Consensus 344 TTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~ 386 (457)
T KOG0743|consen 344 TTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE 386 (457)
T ss_pred ecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999988653
No 95
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.80 E-value=1.4e-18 Score=154.47 Aligned_cols=131 Identities=41% Similarity=0.673 Sum_probs=112.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCC-CC
Q 007255 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR-DH 134 (611)
Q Consensus 56 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~-~~ 134 (611)
|||+||||||||++++.+|+.++.+++.+++..+...+.+.....+..+|..+.... +|+||+|||+|.+.+.. ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~vl~iDe~d~l~~~~~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA---KPCVLFIDEIDKLFPKSQPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS---TSEEEEEETGGGTSHHCSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccc---cceeeeeccchhcccccccc
Confidence 689999999999999999999999999999999998888899999999999986543 48999999999999876 23
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccC
Q 007255 135 RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTV 193 (611)
Q Consensus 135 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 193 (611)
.......+++.|+..++..... ..++++|+|||.++.+++++.+ +||+..+++|.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~---~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSK---NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTT---SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccc---cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 4455667889999999976543 2369999999999999999996 79999998863
No 96
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=4.1e-18 Score=177.69 Aligned_cols=188 Identities=17% Similarity=0.183 Sum_probs=144.2
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS----------- 351 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~----------- 351 (611)
.+.+.+|++++|++.+.+.|..++.. .+.++++||+||||||||++|+++|+.+++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKS------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 34567899999999999999988873 2345679999999999999999999999773
Q ss_pred -------------EEeecchhhccccccchHHHHHHHHHHHH----hcCCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 352 -------------FFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 352 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
++.++++.- .....++.+.+.+. .....|+||||+|.+ +...+
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L--------------s~~A~ 138 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHML--------------TDQSF 138 (484)
T ss_pred cHHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc--------------CHHHH
Confidence 333333211 11234455544443 233459999999988 24578
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
++||+.|+ ++...++||++|+.++.+.+++++ |+. .+.|..++.++..+.++..+...++. ++..+..+++.++
T Consensus 139 NALLKtLE--EPp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~ 213 (484)
T PRK14956 139 NALLKTLE--EPPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGD 213 (484)
T ss_pred HHHHHHhh--cCCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 99999998 577899999999999999999998 987 78899999988888888777665543 4456889999999
Q ss_pred CCCHHHHHHHHHHHH
Q 007255 494 LFTGAELEGLCREAG 508 (611)
Q Consensus 494 g~s~~~i~~~~~~a~ 508 (611)
| +.++..+++..+.
T Consensus 214 G-d~RdAL~lLeq~i 227 (484)
T PRK14956 214 G-SVRDMLSFMEQAI 227 (484)
T ss_pred C-hHHHHHHHHHHHH
Confidence 8 6788777776654
No 97
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.79 E-value=2.7e-18 Score=170.35 Aligned_cols=224 Identities=23% Similarity=0.331 Sum_probs=152.8
Q ss_pred cCCCcccccccchhHHH---HHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchh
Q 007255 283 EIPKVTWEDIGGLRDLK---KKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAE 359 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k---~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~ 359 (611)
...+.++++++||+++. +.|.+++.. ....+++||||||||||++|++||...++.|..+++..
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 34567899999999875 446666653 34468999999999999999999999999999998743
Q ss_pred hccccccchHHHHHHHHHHHHhcC----CcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEe
Q 007255 360 LYSMYVGESEALLRNTFQRARLAA----PSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAA 435 (611)
Q Consensus 360 ~~~~~~g~~~~~~~~~~~~a~~~~----p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~ 435 (611)
.+.+.++.+++.++... ..||||||||.+- +.-+..||-.++ .+.+++||+
T Consensus 84 -------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn--------------K~QQD~lLp~vE----~G~iilIGA 138 (436)
T COG2256 84 -------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN--------------KAQQDALLPHVE----NGTIILIGA 138 (436)
T ss_pred -------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC--------------hhhhhhhhhhhc----CCeEEEEec
Confidence 34566889999986533 3699999999882 223456777774 678899988
Q ss_pred cC--CCcccchhccCCCCccceeecCCCCHHHHHHHHHHHh--cCCCCC------CcccHHHHHHhCCCCCHHHHHHHHH
Q 007255 436 TN--RPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHT--RNMKVG------DDVDLRSIAEETELFTGAELEGLCR 505 (611)
Q Consensus 436 tn--~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~--~~~~~~------~~~~~~~la~~~~g~s~~~i~~~~~ 505 (611)
|+ ....+.+|+++ |.. ++.+.+.+.++..++++..+ ....+. ++..++.++..++| |.+.+++
T Consensus 139 TTENPsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN 211 (436)
T COG2256 139 TTENPSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALN 211 (436)
T ss_pred cCCCCCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHH
Confidence 74 34589999998 876 88888999999999998632 222222 23446778887776 5555544
Q ss_pred HHHHHHHHhhcccccccHHHHHHHHhhcCCCCCHH---HHHHHHHHhhcC
Q 007255 506 EAGIVALREDISATAVRNRHFQTVKDSLKPALTKE---EIDSYSSFMKSQ 552 (611)
Q Consensus 506 ~a~~~a~~~~~~~~~i~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~ 552 (611)
..-..+.... ....+..+.+...+.+..+..+.. -.+....|.+..
T Consensus 212 ~LE~~~~~~~-~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSv 260 (436)
T COG2256 212 LLELAALSAE-PDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSV 260 (436)
T ss_pred HHHHHHHhcC-CCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhh
Confidence 3222222111 112344666777776554433322 245555555544
No 98
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=8.6e-19 Score=186.70 Aligned_cols=189 Identities=15% Similarity=0.204 Sum_probs=145.2
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS----------- 351 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~----------- 351 (611)
++.+.+|++|+|++.+++.|.+++.. .+.++.+||+||+|+|||++|+.+|+.++|.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 34567899999999999999999873 2456788999999999999999999999872
Q ss_pred ------------------EEeecchhhccccccchHHHHHHHHHHHH----hcCCcEEEEcccccccccCCCCCCCCcch
Q 007255 352 ------------------FFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITV 409 (611)
Q Consensus 352 ------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~ 409 (611)
++.+++++- .....++.+.+.+. .....|++|||+|.+
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-------------- 136 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-------------- 136 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhc--------------
Confidence 233333211 11234555555443 233459999999988
Q ss_pred hHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHH
Q 007255 410 GERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDD-VDLRSI 488 (611)
Q Consensus 410 ~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~l 488 (611)
+....|.||+.|+ ++..+++||++||.++.+.+.+++ |+. .+.|..++.++..+.++..+.+..+..+ ..+..+
T Consensus 137 s~~AaNALLKTLE--EPP~~v~FILaTtep~kLlpTIrS--RCq-~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~I 211 (700)
T PRK12323 137 TNHAFNAMLKTLE--EPPEHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLL 211 (700)
T ss_pred CHHHHHHHHHhhc--cCCCCceEEEEeCChHhhhhHHHH--HHH-hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 2457899999998 678899999999999999999998 986 8999999999999988877655544433 347888
Q ss_pred HHhCCCCCHHHHHHHHHHHHH
Q 007255 489 AEETELFTGAELEGLCREAGI 509 (611)
Q Consensus 489 a~~~~g~s~~~i~~~~~~a~~ 509 (611)
++.++| +.++..+++..+..
T Consensus 212 A~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 212 AQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 999988 78888888776554
No 99
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=5.5e-18 Score=182.76 Aligned_cols=190 Identities=16% Similarity=0.205 Sum_probs=146.4
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS----------- 351 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~----------- 351 (611)
++.+.+|++|+|++.+++.|..++.. .+.++.+||+||+|||||++|+++|+.++|.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 34567899999999999999998873 2456778999999999999999999999763
Q ss_pred -------------EEeecchhhccccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 352 -------------FFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 352 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
++.++.++ ......++.+++.+.. ....|+||||+|.| +....
T Consensus 77 ~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L--------------T~~A~ 136 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML--------------TNHAF 136 (830)
T ss_pred HHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC--------------CHHHH
Confidence 33333221 1122345555555432 23459999999988 24567
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
|.||+.|+ ++..++.||++||.++.|.+.+++ |+. .+.|..++.++..+.|+..+.+..+. ++..+..|++.++
T Consensus 137 NALLKtLE--EPP~~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~ 211 (830)
T PRK07003 137 NAMLKTLE--EPPPHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQ 211 (830)
T ss_pred HHHHHHHH--hcCCCeEEEEEECChhhccchhhh--heE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 99999998 577889999999999999999998 996 89999999999999999877665554 4455888999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGIV 510 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~~ 510 (611)
| +.++..+++..+..+
T Consensus 212 G-smRdALsLLdQAia~ 227 (830)
T PRK07003 212 G-SMRDALSLTDQAIAY 227 (830)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 8 678887777766543
No 100
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.78 E-value=3.3e-18 Score=195.93 Aligned_cols=209 Identities=19% Similarity=0.229 Sum_probs=152.4
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEee
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSL 355 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~~ 355 (611)
+-.++.++|.+...+.+.+.+.. +..++++|+||||||||++|+++|..+ +.+++.+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 44678899999887777777653 445689999999999999999999986 6788999
Q ss_pred cchhhc--cccccchHHHHHHHHHHHHhc-CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEE
Q 007255 356 SGAELY--SMYVGESEALLRNTFQRARLA-APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILV 432 (611)
Q Consensus 356 ~~~~~~--~~~~g~~~~~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 432 (611)
+.+.+. .+|.|+.+..++.+++.+... .|+||||||+|.+.+.++..+ + ....+.|... -..+.+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~--~----~d~~~~Lk~~----l~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG--A----MDAGNMLKPA----LARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc--h----hHHHHHhchh----hhcCceEE
Confidence 888876 478999999999999998654 588999999999986543211 1 1222333222 35678999
Q ss_pred EEecCCCc-----ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHH
Q 007255 433 LAATNRPH-----AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREA 507 (611)
Q Consensus 433 I~~tn~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a 507 (611)
||+||.++ .+|+++.| ||+ .|.++.|+.+++..|++.....++..+.+. ++...+..++..+
T Consensus 306 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~----------~~d~~i~~~~~ls 372 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVR----------ITDPAIVAAATLS 372 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCC----------CCHHHHHHHHHhc
Confidence 99999874 47999999 997 689999999999999998888877766554 3344444444444
Q ss_pred HHHHHHhhcccccccHHHHHHHH
Q 007255 508 GIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 508 ~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
..+.-.+.++++.|+.-|...+.
T Consensus 373 ~~yi~~r~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 373 HRYITDRFLPDKAIDLIDEAAAR 395 (852)
T ss_pred cccccccCCchHHHHHHHHHHHH
Confidence 44444444444444444444443
No 101
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.78 E-value=3.2e-18 Score=195.53 Aligned_cols=197 Identities=23% Similarity=0.286 Sum_probs=148.8
Q ss_pred cccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEeec
Q 007255 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSLS 356 (611)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~~~ 356 (611)
-.++.++|.+...+.+.+.+.. +.+++++|+||||||||++|+++|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3578899999999988888763 455689999999999999999999987 47899999
Q ss_pred chhhc--cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEE
Q 007255 357 GAELY--SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLA 434 (611)
Q Consensus 357 ~~~~~--~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~ 434 (611)
++.+. .+|.|+.+..++.+++.++...++||||||+|.+++.++..+ ..+ +.+-|...+ ..+.+.+||
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g--~~~----~a~lLkp~l----~rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG--AID----AANILKPAL----ARGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC--ccc----HHHHhHHHH----hCCCcEEEE
Confidence 99887 479999999999999999888889999999999987754221 122 222222233 467899999
Q ss_pred ecCCCc-----ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcC----CCC-CCcccHHHHHHhCCCCCH-----HH
Q 007255 435 ATNRPH-----AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRN----MKV-GDDVDLRSIAEETELFTG-----AE 499 (611)
Q Consensus 435 ~tn~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~----~~~-~~~~~~~~la~~~~g~s~-----~~ 499 (611)
+||..+ ..|+++.| ||+ .|.++.|+.++...|++..... ..+ .++..+..++..+.+|-+ ..
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdk 389 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDK 389 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchH
Confidence 999765 47999999 998 5899999999999999854432 222 234446777777776543 34
Q ss_pred HHHHHHHHHH
Q 007255 500 LEGLCREAGI 509 (611)
Q Consensus 500 i~~~~~~a~~ 509 (611)
...++.+|+.
T Consensus 390 aidlld~a~a 399 (821)
T CHL00095 390 AIDLLDEAGS 399 (821)
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 102
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=2.3e-17 Score=169.80 Aligned_cols=233 Identities=20% Similarity=0.234 Sum_probs=165.1
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccc
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~ 363 (611)
..+.+|++++|++..++.+...+..... ...++.+++||||||||||++|+++|++++..+...+.+.+..
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~- 89 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK- 89 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-
Confidence 3455899999999999999888753111 1245678999999999999999999999999887766553321
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC----------------CC
Q 007255 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE----------------QA 427 (611)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~~ 427 (611)
...+..++... ..++||||||+|.+... ....|...|+... .-
T Consensus 90 -----~~~l~~~l~~l--~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 90 -----PGDLAAILTNL--EEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred -----hHHHHHHHHhc--ccCCEEEEecHhhcchH--------------HHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 12233344332 35679999999988311 1122333333210 11
Q ss_pred CCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHH
Q 007255 428 KGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCRE 506 (611)
Q Consensus 428 ~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~ 506 (611)
..+.+|++||++..+++++.+ ||...+.++.|+.+++.+|++.......+. ++..+..+++.+.| +++.+..+++.
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~ 225 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRR 225 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHH
Confidence 247889999999999999988 999899999999999999999777665554 33457899999998 56888888887
Q ss_pred HHHHHHHhhcccccccHHHHHHHHhhcCCC---CCHHHHHHHHHHhhc
Q 007255 507 AGIVALREDISATAVRNRHFQTVKDSLKPA---LTKEEIDSYSSFMKS 551 (611)
Q Consensus 507 a~~~a~~~~~~~~~i~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~ 551 (611)
+...+..+ ....++..+...++..+... .+..+.+.+..+.+.
T Consensus 226 ~~~~a~~~--~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~ 271 (328)
T PRK00080 226 VRDFAQVK--GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEK 271 (328)
T ss_pred HHHHHHHc--CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHH
Confidence 77666544 24568888899888776543 444554544445444
No 103
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=8.4e-18 Score=165.58 Aligned_cols=210 Identities=26% Similarity=0.376 Sum_probs=145.7
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~ 96 (611)
+|++++-.-...+.|..+-..... .+....+-++||||||||||||++++.+|+..|..+-.....++... -.+
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaN-----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~q 426 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATAN-----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQ 426 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcc-----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chH
Confidence 355565555555555554322111 11122344899999999999999999999999998877777665432 124
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHH-HHHHHhcCCCCCCCCCcEEEEEeecCcccc
Q 007255 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQ-LFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (611)
Q Consensus 97 ~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~-ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l 175 (611)
....+.++|+.++.. .++-+|||||+|.+...++.. ..++.+.. |..++-...... ..++++.+||.|.++
T Consensus 427 aVTkiH~lFDWakkS---~rGLllFIDEADAFLceRnkt--ymSEaqRsaLNAlLfRTGdqS---rdivLvlAtNrpgdl 498 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKS---RRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTGDQS---RDIVLVLATNRPGDL 498 (630)
T ss_pred HHHHHHHHHHHHhhc---ccceEEEehhhHHHHHHhchh--hhcHHHHHHHHHHHHHhcccc---cceEEEeccCCccch
Confidence 456788999998753 467899999999988766432 11122222 222222222111 158899999999999
Q ss_pred cHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC---------------------------cccHHHHHHhccCC
Q 007255 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA---------------------------NVDLEAIATSCNGY 228 (611)
Q Consensus 176 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~---------------------------~~~~~~la~~~~g~ 228 (611)
|-++.. |++..++||.|..++|..++..|+.++-... +.-+.+.+..|+||
T Consensus 499 DsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGf 576 (630)
T KOG0742|consen 499 DSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGF 576 (630)
T ss_pred hHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCC
Confidence 999988 9999999999999999999998876532110 01167888999999
Q ss_pred ccccHHHHHHHHHH
Q 007255 229 VGADLEALCREATM 242 (611)
Q Consensus 229 ~~~dl~~l~~~a~~ 242 (611)
+|++|..|+..+..
T Consensus 577 SGREiakLva~vQA 590 (630)
T KOG0742|consen 577 SGREIAKLVASVQA 590 (630)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999988876543
No 104
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.76 E-value=1.8e-17 Score=169.51 Aligned_cols=212 Identities=21% Similarity=0.228 Sum_probs=150.3
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccccccc
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGE 367 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g~ 367 (611)
+|++++|++++++.|..++..... ....+.+++|+||||||||++|+++|++++..+.....+.... .+
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~- 70 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PG- 70 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--ch-
Confidence 689999999999999888753211 1233567999999999999999999999998876665443221 11
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC----------------CCCCeE
Q 007255 368 SEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE----------------QAKGIL 431 (611)
Q Consensus 368 ~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~~~ 431 (611)
.+...+.. ...+.++||||+|.+... ....|+..|+... ....+.
T Consensus 71 ---~l~~~l~~--~~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 71 ---DLAAILTN--LEEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred ---hHHHHHHh--cccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12222222 235679999999988421 2233443433211 123478
Q ss_pred EEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007255 432 VLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIV 510 (611)
Q Consensus 432 vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~ 510 (611)
+|++||++..+++++++ ||...+.+++|+.+++.++++......... ++..++.+++.+.|+ ++.+..++..+...
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDF 208 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHH
Confidence 99999999999999988 999889999999999999999776654443 344578899999994 57778888877655
Q ss_pred HHHhhcccccccHHHHHHHHhhcC
Q 007255 511 ALREDISATAVRNRHFQTVKDSLK 534 (611)
Q Consensus 511 a~~~~~~~~~i~~~~~~~~l~~~~ 534 (611)
+.... ...++.+++..++..+.
T Consensus 209 a~~~~--~~~it~~~v~~~l~~l~ 230 (305)
T TIGR00635 209 AQVRG--QKIINRDIALKALEMLM 230 (305)
T ss_pred HHHcC--CCCcCHHHHHHHHHHhC
Confidence 54332 35588888888887653
No 105
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.4e-18 Score=162.56 Aligned_cols=181 Identities=33% Similarity=0.468 Sum_probs=140.7
Q ss_pred cCCcHHHHHHHHHHHHhhhhCchHHH-hcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEcccccc
Q 007255 21 IGGNRAAVEALRELITFPLLYSSQAQ-KLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG---------AHLTVISPHSVH 90 (611)
Q Consensus 21 i~G~~~~~~~l~~~l~~~~~~~~~~~-~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~---------~~~~~v~~~~~~ 90 (611)
++=-...|++|.......+...+..- ..=+.+++-+||+||||||||++++++|+.+. ..+++++++.++
T Consensus 144 Liyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF 223 (423)
T KOG0744|consen 144 LIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF 223 (423)
T ss_pred HhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH
Confidence 33344567777766554443332211 11234668899999999999999999999984 468999999999
Q ss_pred cccccchHHHHHHHHHHHHhhhhcCCC--eEEEEccccccCCCCC---CC--chhhHHHHHHHHHHHhcCCCCCCCCCcE
Q 007255 91 KAHVGESEKALREAFSQASSHALSGKP--SVVFIDEIDALCPRRD---HR--REQDVRIASQLFTLMDSNKPSKTSVPHV 163 (611)
Q Consensus 91 ~~~~~~~~~~l~~~f~~~~~~~~~~~~--~il~IDeid~l~~~~~---~~--~~~~~~~~~~ll~~l~~~~~~~~~~~~v 163 (611)
++|++++.+.+.++|++....... ++ ..++|||++.|+..+. ++ .....++++++++.+|..+. .++|
T Consensus 224 SKWFsESgKlV~kmF~kI~ELv~d-~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~----~~Nv 298 (423)
T KOG0744|consen 224 SKWFSESGKLVAKMFQKIQELVED-RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR----YPNV 298 (423)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhC-CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc----CCCE
Confidence 999999999999999998766532 33 3566999999987663 12 22345899999999998764 3479
Q ss_pred EEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhc
Q 007255 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTK 208 (611)
Q Consensus 164 ~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~ 208 (611)
++.+|+|-.+.+|.++-. |-+.+.++.+|+...+.+|++..+.
T Consensus 299 liL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred EEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 999999999999999988 9898999999999999999986553
No 106
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.76 E-value=3.3e-17 Score=156.79 Aligned_cols=195 Identities=20% Similarity=0.206 Sum_probs=142.9
Q ss_pred cccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCC------cE
Q 007255 279 GVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA------SF 352 (611)
Q Consensus 279 ~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~------~~ 352 (611)
.+...+.+.+++++.|++.+.+.|...+.. +...++|||||||||||+.|+++|.++++ .+
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 344556677899999999999999998874 22347999999999999999999999976 34
Q ss_pred EeecchhhccccccchHHHHHHHHHHHHhc------CC----cEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhc
Q 007255 353 FSLSGAELYSMYVGESEALLRNTFQRARLA------AP----SIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (611)
Q Consensus 353 ~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~------~p----~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 422 (611)
..+++++..+..++ ...++. |...... .| .|+++||+|.+ .....++|.+.||
T Consensus 92 l~lnaSderGisvv--r~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsm--------------tsdaq~aLrr~mE 154 (346)
T KOG0989|consen 92 LELNASDERGISVV--REKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSM--------------TSDAQAALRRTME 154 (346)
T ss_pred hhhcccccccccch--hhhhcC-HHHHhhccccccCCCCCcceEEEEechhhh--------------hHHHHHHHHHHHh
Confidence 55566665554322 122222 2222111 12 49999999987 3567899999998
Q ss_pred CCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHHhCCCCCHHHHH
Q 007255 423 GLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGD-DVDLRSIAEETELFTGAELE 501 (611)
Q Consensus 423 ~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~s~~~i~ 501 (611)
. ....+.||..||+++.|...+.+ |+. .+.|+....+...+.|+.+..+..+.- +..+..++..++| +-++..
T Consensus 155 ~--~s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 155 D--FSRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAI 228 (346)
T ss_pred c--cccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 4 56778899999999999999998 888 778887777788888887777666653 3457889998887 555555
Q ss_pred HHHHHHHH
Q 007255 502 GLCREAGI 509 (611)
Q Consensus 502 ~~~~~a~~ 509 (611)
..++.+..
T Consensus 229 t~Lqsls~ 236 (346)
T KOG0989|consen 229 TTLQSLSL 236 (346)
T ss_pred HHHHHhhc
Confidence 55555544
No 107
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=2e-17 Score=176.84 Aligned_cols=190 Identities=17% Similarity=0.231 Sum_probs=145.4
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS----------- 351 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~----------- 351 (611)
.+.+.+|++|+|++.+++.|..++.. .+.++++||+||+|||||++|+++|+.++|.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 34567899999999999999998873 3456789999999999999999999999762
Q ss_pred -------------EEeecchhhccccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 352 -------------FFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 352 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
++.+++++- .....++.+...+.. ....|++|||+|.+- ....
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------------~~A~ 135 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------------THSF 135 (702)
T ss_pred HHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------------HHHH
Confidence 344443321 123345555554432 234599999999882 3467
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.|++.|+ ++++.+.||++|+.+..+.+.+++ |+. ++.|..++.++..+.++..+.+.++. .+..+..+++.+.
T Consensus 136 NALLKtLE--EPP~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~ 210 (702)
T PRK14960 136 NALLKTLE--EPPEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQ 210 (702)
T ss_pred HHHHHHHh--cCCCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 89999998 466788888999999999888887 886 89999999999999998777665554 3455888999988
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGIV 510 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~~ 510 (611)
| +.+++.+++..+..+
T Consensus 211 G-dLRdALnLLDQaIay 226 (702)
T PRK14960 211 G-SLRDALSLTDQAIAY 226 (702)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 8 788888887766543
No 108
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=3.5e-17 Score=155.03 Aligned_cols=183 Identities=27% Similarity=0.404 Sum_probs=140.3
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccc
Q 007255 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAH 93 (611)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~ 93 (611)
..+.|++.+|++++|+.|.-++.....+. ...-|+||+||||.||||+|..+|+++|.++...+...+..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 35788999999999999999887643322 35579999999999999999999999999998888766543
Q ss_pred ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCC------------CCCCCCC
Q 007255 94 VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK------------PSKTSVP 161 (611)
Q Consensus 94 ~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~------------~~~~~~~ 161 (611)
+++ +..++... ....||||||||.+.+ .+...|+..|+.+. ...-..+
T Consensus 91 ~gD----laaiLt~L------e~~DVLFIDEIHrl~~----------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 91 PGD----LAAILTNL------EEGDVLFIDEIHRLSP----------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred hhh----HHHHHhcC------CcCCeEEEehhhhcCh----------hHHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 121 22333222 2467999999999976 34556667777632 1112346
Q ss_pred cEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcc-cHHHHHHhccCC
Q 007255 162 HVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGY 228 (611)
Q Consensus 162 ~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~~~~la~~~~g~ 228 (611)
++.+|++|++...+...|+. ||.....+..++.++..+|++.....+.+..+. ...++|.++.|-
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT 216 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT 216 (332)
T ss_pred CeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC
Confidence 78999999999999999999 999999999999999999999887766655433 367777777764
No 109
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=4.5e-17 Score=179.09 Aligned_cols=188 Identities=16% Similarity=0.190 Sum_probs=142.6
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcE----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF---------- 352 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~---------- 352 (611)
++.+.+|++|+|++.+++.|..++.. .+.++.+||+||||||||++|+++|+.+++..
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQ------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 34567899999999999999988763 24567789999999999999999999998751
Q ss_pred --------------EeecchhhccccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 353 --------------FSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 353 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
+.+++.+ ......++.+.+.+.. ....|+||||+|.+ ....+
T Consensus 77 ~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L--------------T~eAq 136 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML--------------SRSSF 136 (944)
T ss_pred hHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc--------------CHHHH
Confidence 1111110 0112334555544432 23459999999988 35678
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.||+.|+ ++++.+.||++|+.+..|.+.+++ |+. ++.|..++.++....++..+....+. .+..+..+++.+.
T Consensus 137 NALLKtLE--EPP~~vrFILaTTe~~kLl~TIlS--RCq-~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~ 211 (944)
T PRK14949 137 NALLKTLE--EPPEHVKFLLATTDPQKLPVTVLS--RCL-QFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAAN 211 (944)
T ss_pred HHHHHHHh--ccCCCeEEEEECCCchhchHHHHH--hhe-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 99999998 678889999999999999999888 885 89999999999998888766554433 3345788999998
Q ss_pred CCCHHHHHHHHHHHH
Q 007255 494 LFTGAELEGLCREAG 508 (611)
Q Consensus 494 g~s~~~i~~~~~~a~ 508 (611)
| +.+++.++|..+.
T Consensus 212 G-d~R~ALnLLdQal 225 (944)
T PRK14949 212 G-SMRDALSLTDQAI 225 (944)
T ss_pred C-CHHHHHHHHHHHH
Confidence 8 7888888887655
No 110
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=4.5e-17 Score=173.04 Aligned_cols=204 Identities=16% Similarity=0.173 Sum_probs=147.6
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCC-------------
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA------------- 350 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~------------- 350 (611)
+.+.+|++++|++++++.|...+.. ...++++||+||||||||++|+++|+.+++
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKK------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 4567899999999999999888763 245567999999999999999999999876
Q ss_pred -----------cEEeecchhhccccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHH
Q 007255 351 -----------SFFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLS 415 (611)
Q Consensus 351 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 415 (611)
.++.++++.- ..-..++.+...+.. ....|+||||+|.+. ...++
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------------~~a~~ 135 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------------KEAFN 135 (472)
T ss_pred HHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------------HHHHH
Confidence 3444444311 112345555555442 223599999999882 34568
Q ss_pred HHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCC
Q 007255 416 TLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETEL 494 (611)
Q Consensus 416 ~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 494 (611)
.|+..|+ .+++.+++|++|+.|+.+++++.+ |+. .+.|.+++.++...+++..+...++. ++..+..+++.+.|
T Consensus 136 ~LLk~LE--~p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 136 ALLKTLE--EPPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred HHHHHHH--hCCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 8888888 456778888888889999999998 886 89999999999999999776554433 34557888888776
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHh
Q 007255 495 FTGAELEGLCREAGIVALREDISATAVRNRHFQTVKD 531 (611)
Q Consensus 495 ~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~ 531 (611)
+.+.+.+.+..+...+ ...|+.+++..++.
T Consensus 211 -dlR~aln~Le~l~~~~------~~~It~e~V~~~l~ 240 (472)
T PRK14962 211 -GLRDALTMLEQVWKFS------EGKITLETVHEALG 240 (472)
T ss_pred -CHHHHHHHHHHHHHhc------CCCCCHHHHHHHHc
Confidence 5556555555433321 12377777777664
No 111
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.74 E-value=5.1e-17 Score=161.34 Aligned_cols=177 Identities=24% Similarity=0.386 Sum_probs=134.6
Q ss_pred ccccccccCCcHHHH---HHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccc
Q 007255 14 KWKAEEAIGGNRAAV---EALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH 90 (611)
Q Consensus 14 ~~~~~~~i~G~~~~~---~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~ 90 (611)
..+.+++++||+..+ ..|.+++.. ....+++|||||||||||+++.+|...+..|..+|+...
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~- 84 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS- 84 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-
Confidence 457899999999886 344454432 234689999999999999999999999999999997653
Q ss_pred cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEee-
Q 007255 91 KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST- 169 (611)
Q Consensus 91 ~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~tt- 169 (611)
..+.++.+++.+.+....++..||||||||.+.. .-+..|+-.++.. .+++|++|
T Consensus 85 ------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK----------~QQD~lLp~vE~G--------~iilIGATT 140 (436)
T COG2256 85 ------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK----------AQQDALLPHVENG--------TIILIGATT 140 (436)
T ss_pred ------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh----------hhhhhhhhhhcCC--------eEEEEeccC
Confidence 3456889999998777678889999999999854 3467788888753 47788776
Q ss_pred -cCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhc--CCCCC------CcccHHHHHHhccCCccc
Q 007255 170 -NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTK--KVPLD------ANVDLEAIATSCNGYVGA 231 (611)
Q Consensus 170 -n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~--~~~~~------~~~~~~~la~~~~g~~~~ 231 (611)
|+.-.+++++++ |+. ++.+.+.+.++..++++.-+. ..++. .+.-++.++..++|-..+
T Consensus 141 ENPsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 141 ENPSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred CCCCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 445699999999 874 789999999999999987332 22222 222467777777765333
No 112
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.74 E-value=3.8e-17 Score=185.63 Aligned_cols=164 Identities=25% Similarity=0.347 Sum_probs=126.1
Q ss_pred ccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc--------
Q 007255 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY-------- 361 (611)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~-------- 361 (611)
+++.|++.+++.+.+++...... +...+.+++|+||||||||++|+++|+.++.+++.++.+.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 35889999999999987643211 112234699999999999999999999999999988765432
Q ss_pred -cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCC-----C--------CC
Q 007255 362 -SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL-----E--------QA 427 (611)
Q Consensus 362 -~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~--------~~ 427 (611)
..|.|...+.+.+.|..+....| |+||||||.+.+... ....+.|+..||.. . ..
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~----------~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR----------GDPASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC----------CCHHHHHHHhcCHHhcCccccccCCceecc
Confidence 25777777777788887766666 999999999964311 11246677776631 1 12
Q ss_pred CCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHh
Q 007255 428 KGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHT 474 (611)
Q Consensus 428 ~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~ 474 (611)
.+++||+|||.++.+++++++ ||+ +|.|+.|+.+++.+|++.++
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 478999999999999999999 996 89999999999999998765
No 113
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=6.7e-17 Score=175.61 Aligned_cols=187 Identities=17% Similarity=0.227 Sum_probs=143.7
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc------------
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS------------ 351 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~------------ 351 (611)
+.+.+|++|+|++.+++.|...+.. .+.++.+||+||+|||||++|+++|+.++|.
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDL------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 4567899999999999999988873 2455678999999999999999999999774
Q ss_pred ------------EEeecchhhccccccchHHHHHHHHHHHH----hcCCcEEEEcccccccccCCCCCCCCcchhHHHHH
Q 007255 352 ------------FFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLS 415 (611)
Q Consensus 352 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 415 (611)
++.+++++ ......++.+.+.+. .....|+||||+|.+ +....+
T Consensus 78 ~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L--------------s~~a~N 137 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML--------------SRHSFN 137 (647)
T ss_pred HHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC--------------CHHHHH
Confidence 22233221 011233555554443 223459999999988 356789
Q ss_pred HHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCC
Q 007255 416 TLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETEL 494 (611)
Q Consensus 416 ~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 494 (611)
.||+.|+ ++++.+.||++|+.++.+.+.+++ |+. .+.|..++.++....++..+....+. .+..+..++..++|
T Consensus 138 ALLKtLE--EPp~~v~FIL~Tt~~~kLl~TI~S--RC~-~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G 212 (647)
T PRK07994 138 ALLKTLE--EPPEHVKFLLATTDPQKLPVTILS--RCL-QFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG 212 (647)
T ss_pred HHHHHHH--cCCCCeEEEEecCCccccchHHHh--hhe-EeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999 688899999999999999999998 885 89999999999999998777554443 33557889999988
Q ss_pred CCHHHHHHHHHHHH
Q 007255 495 FTGAELEGLCREAG 508 (611)
Q Consensus 495 ~s~~~i~~~~~~a~ 508 (611)
+.+++.+++..+.
T Consensus 213 -s~R~Al~lldqai 225 (647)
T PRK07994 213 -SMRDALSLTDQAI 225 (647)
T ss_pred -CHHHHHHHHHHHH
Confidence 7888888876654
No 114
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=2.2e-17 Score=177.26 Aligned_cols=190 Identities=14% Similarity=0.172 Sum_probs=144.8
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS----------- 351 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~----------- 351 (611)
.+.+.+|++++|++.+++.|..++.. .+.++.+||+||+|||||++|+++|+.++|.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 35567899999999999999999873 2456789999999999999999999999764
Q ss_pred -------------EEeecchhhccccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 352 -------------FFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 352 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
++.+++++ ......++.+.+.+.. ....|++|||+|.+. ....
T Consensus 77 ~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------------~~a~ 136 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------------GHSF 136 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------------HHHH
Confidence 44444332 1122345555555432 223599999999882 4567
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.|++.|+ ++++.+.||++|+.++.+.+.+++ |+. .+.|..++.++....++..+++.++. .+..+..+++.+.
T Consensus 137 naLLk~LE--epp~~~~fIlattd~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~ 211 (509)
T PRK14958 137 NALLKTLE--EPPSHVKFILATTDHHKLPVTVLS--RCL-QFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAAN 211 (509)
T ss_pred HHHHHHHh--ccCCCeEEEEEECChHhchHHHHH--Hhh-hhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 99999998 577789999999999999888887 885 78898888988888887776655544 3445788999988
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGIV 510 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~~ 510 (611)
| +.+++.+++..+..+
T Consensus 212 G-slR~al~lLdq~ia~ 227 (509)
T PRK14958 212 G-SVRDALSLLDQSIAY 227 (509)
T ss_pred C-cHHHHHHHHHHHHhc
Confidence 7 888888888776543
No 115
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.8e-17 Score=171.48 Aligned_cols=164 Identities=25% Similarity=0.383 Sum_probs=132.0
Q ss_pred ccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc-------
Q 007255 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS------- 362 (611)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~------- 362 (611)
+|-.|++++|+.+.+++....-. |-....-++|+||||+|||+++++||..+|..|+.++.+-+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 45679999999999998741111 2233455789999999999999999999999999998865543
Q ss_pred --ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-------------CC
Q 007255 363 --MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-------------QA 427 (611)
Q Consensus 363 --~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------~~ 427 (611)
-|+|.-.+.+-++++..+..+| +++|||||.+.+ +..+ ++ .++||..||.-. .-
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~qG----DP----asALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GHQG----DP----ASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CCCC----Ch----HHHHHHhcChhhccchhhhccccccch
Confidence 3999999999999999999999 999999999962 2222 22 266777776311 12
Q ss_pred CCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHh
Q 007255 428 KGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHT 474 (611)
Q Consensus 428 ~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~ 474 (611)
.+++||+|+|..+.|+++|+. |++ +|.++-+..++...|-+.++
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhh
Confidence 379999999999999999999 998 99999999999999999775
No 116
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=5.4e-17 Score=171.42 Aligned_cols=204 Identities=18% Similarity=0.208 Sum_probs=153.5
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS----------- 351 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~----------- 351 (611)
.+.+.+|+|++|++.+++.|...+.. .+.++++||+||+|+|||++|+++|..++|.
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 34567899999999999999988773 2556899999999999999999999987542
Q ss_pred -------------EEeecchhhccccccchHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 352 -------------FFSLSGAELYSMYVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 352 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
++.+++++- .+...++.+.+.+... ...|++|||+|.+. ...+
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~ 133 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAF 133 (491)
T ss_pred HHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHH
Confidence 344444321 1234466666665432 23599999999882 3567
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.|++.|+ ++++.+.+|++|+.++.+.+.+++ |+. .+.|..++.++....++..+.+.++. ++..+..+++.+.
T Consensus 134 NaLLK~LE--ePp~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~ 208 (491)
T PRK14964 134 NALLKTLE--EPAPHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSS 208 (491)
T ss_pred HHHHHHHh--CCCCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 89999998 577889999999999999999988 886 78999999999999999777665554 4456888999988
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
| +.+++.+.+..+..+.- ..|+.+++...+
T Consensus 209 G-slR~alslLdqli~y~~------~~It~e~V~~ll 238 (491)
T PRK14964 209 G-SMRNALFLLEQAAIYSN------NKISEKSVRDLL 238 (491)
T ss_pred C-CHHHHHHHHHHHHHhcC------CCCCHHHHHHHH
Confidence 7 78888888877665431 235555554443
No 117
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1e-16 Score=166.83 Aligned_cols=204 Identities=16% Similarity=0.180 Sum_probs=148.2
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcE----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF---------- 352 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~---------- 352 (611)
.+.+.+|++|+|++.+++.+...+.. .+.++++||+||||+|||++|+++|+.+++..
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSL------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHc------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 34567899999999999999988863 24567789999999999999999999987532
Q ss_pred --------------EeecchhhccccccchHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 353 --------------FSLSGAELYSMYVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 353 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
+.+++++ ......++.+...+... ...|++|||+|.+. ....
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~ 136 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSF 136 (363)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHH
Confidence 1122110 01223455665554322 23499999999872 3456
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.|++.++ ++++.+.+|++|+.++.+.+++.+ |+. .+.|++|+.++..++++..++..+.. ++..+..++..+.
T Consensus 137 naLLk~lE--e~~~~~~fIl~t~~~~~l~~tI~S--Rc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~ 211 (363)
T PRK14961 137 NALLKTLE--EPPQHIKFILATTDVEKIPKTILS--RCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAH 211 (363)
T ss_pred HHHHHHHh--cCCCCeEEEEEcCChHhhhHHHHh--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 88999998 466788888889989999999887 885 89999999999999999777665543 4456788898888
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
| +.+++.+.+..+.... ...++.+++..++
T Consensus 212 G-~~R~al~~l~~~~~~~------~~~It~~~v~~~l 241 (363)
T PRK14961 212 G-SMRDALNLLEHAINLG------KGNINIKNVTDML 241 (363)
T ss_pred C-CHHHHHHHHHHHHHhc------CCCCCHHHHHHHH
Confidence 7 7888888777665331 2345665555544
No 118
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.72 E-value=5e-16 Score=158.81 Aligned_cols=193 Identities=26% Similarity=0.359 Sum_probs=136.2
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~ 96 (611)
.|++++|++++++.|..++..... ....+.+++|+||||||||++++++|++++..+..++......
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 578999999999999988754221 1234578999999999999999999999998876665443211
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC------------CCCCCcEE
Q 007255 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS------------KTSVPHVV 164 (611)
Q Consensus 97 ~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~------------~~~~~~v~ 164 (611)
...+...+.. ...+.+|||||+|.+.+ .....|+..++..... ....+++.
T Consensus 69 -~~~l~~~l~~------~~~~~vl~iDEi~~l~~----------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 -PGDLAAILTN------LEEGDVLFIDEIHRLSP----------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred -chhHHHHHHh------cccCCEEEEehHhhhCH----------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 1112222222 12467999999998864 2334456666543210 01223478
Q ss_pred EEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCCccccHHHHHHHHHH
Q 007255 165 VVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEALCREATM 242 (611)
Q Consensus 165 ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~~~~dl~~l~~~a~~ 242 (611)
+|++||.+..+++++++ ||...+.+++|+.+++.++++..+......- +..+..++..+.|+. +.+..++..+..
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~ 207 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRD 207 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHH
Confidence 89999999999999998 9988889999999999999998876554432 234788899888875 555666665543
No 119
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=3.1e-16 Score=167.18 Aligned_cols=199 Identities=21% Similarity=0.238 Sum_probs=148.7
Q ss_pred cccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEee-----
Q 007255 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL----- 355 (611)
Q Consensus 281 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~----- 355 (611)
...+.+.+|++++|++.+.+.|...+.. .+.++++||+||||||||++|+++|+.+++..-..
T Consensus 12 a~kyRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 12 ARKYRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 3345677899999999999999987763 25567899999999999999999999997632100
Q ss_pred -------cch--------hhccc--cccchHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 356 -------SGA--------ELYSM--YVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 356 -------~~~--------~~~~~--~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
++. ++..- ....+...++.+++.+... ...|++|||+|.+. ...+
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~a~ 145 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KGAF 145 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HHHH
Confidence 000 11100 0111344567777666532 23599999999872 3567
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.|++.|+ +++..++||++|+.++.+.+++.+ |+. .+.|..++.++...+++..+++.++. ++..+..+++.++
T Consensus 146 naLLk~LE--epp~~~vfI~aTte~~kI~~tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLE--EPPPHIIFIFATTEVQKIPATIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHh--hcCCCEEEEEEeCChHHhhHHHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 88999998 577788999999999999999988 885 88999999999999999887766554 3355788999998
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGIVA 511 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~~a 511 (611)
| +.+++.+.+..+...+
T Consensus 221 G-slR~al~~Ldkai~~~ 237 (507)
T PRK06645 221 G-SARDAVSILDQAASMS 237 (507)
T ss_pred C-CHHHHHHHHHHHHHhh
Confidence 8 8888888888776543
No 120
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.71 E-value=6.9e-16 Score=158.87 Aligned_cols=197 Identities=25% Similarity=0.342 Sum_probs=140.0
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccc
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~ 94 (611)
...|++++|+++.++.|..++..... .-.++.+++|+||||||||++++++|++++..+..++...+..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 36889999999999999988754211 1235679999999999999999999999998877766543321
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC------------CCCCCc
Q 007255 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS------------KTSVPH 162 (611)
Q Consensus 95 ~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~------------~~~~~~ 162 (611)
...+..++... ..++||||||+|.+.. .....++..++..... ....++
T Consensus 90 ---~~~l~~~l~~l------~~~~vl~IDEi~~l~~----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 90 ---PGDLAAILTNL------EEGDVLFIDEIHRLSP----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ---hHHHHHHHHhc------ccCCEEEEecHhhcch----------HHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 12233333322 2477999999998854 2233345555543110 001234
Q ss_pred EEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCccccHHHHHHHHH
Q 007255 163 VVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEALCREAT 241 (611)
Q Consensus 163 v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~~~dl~~l~~~a~ 241 (611)
+.+|++||....+++++++ ||...+.+++|+.+++.+|++..........+ ..+..++..+.|.. +.+..+++.+.
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHH
Confidence 7889999999999999998 99888999999999999999988776654432 34788899888865 55666666554
Q ss_pred HHH
Q 007255 242 MSA 244 (611)
Q Consensus 242 ~~a 244 (611)
..+
T Consensus 228 ~~a 230 (328)
T PRK00080 228 DFA 230 (328)
T ss_pred HHH
Confidence 433
No 121
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=3.6e-16 Score=169.66 Aligned_cols=190 Identities=16% Similarity=0.216 Sum_probs=143.7
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS----------- 351 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~----------- 351 (611)
++.+.+|++++|++.+++.|..++.. .+.++.+||+||+|||||++|+++|+.++|.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 34567899999999999999998873 2456778999999999999999999999762
Q ss_pred ------------------EEeecchhhccccccchHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcch
Q 007255 352 ------------------FFSLSGAELYSMYVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITV 409 (611)
Q Consensus 352 ------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~ 409 (611)
++.+++++ ......++.+.+.+... ...|++|||+|.+.
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------- 137 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------- 137 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-------------
Confidence 22222221 11223456666554322 23499999999882
Q ss_pred hHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHH
Q 007255 410 GERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSI 488 (611)
Q Consensus 410 ~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l 488 (611)
...++.|++.|+ ++.+.+.||++|+.++.+.+.+++ |+. .+.|..++.++..+.++..+.+.++. ++..+..|
T Consensus 138 -~~a~NaLLKtLE--EPP~~~~fIL~Ttd~~kil~TIlS--Rc~-~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~L 211 (618)
T PRK14951 138 -NTAFNAMLKTLE--EPPEYLKFVLATTDPQKVPVTVLS--RCL-QFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLL 211 (618)
T ss_pred -HHHHHHHHHhcc--cCCCCeEEEEEECCchhhhHHHHH--hce-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 456789999998 577888899999999999888887 885 89999999999999998777655554 33457889
Q ss_pred HHhCCCCCHHHHHHHHHHHHHH
Q 007255 489 AEETELFTGAELEGLCREAGIV 510 (611)
Q Consensus 489 a~~~~g~s~~~i~~~~~~a~~~ 510 (611)
++.++| +.+++.+++..+..+
T Consensus 212 a~~s~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 212 ARAARG-SMRDALSLTDQAIAF 232 (618)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh
Confidence 999888 788888877665543
No 122
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=2.3e-16 Score=170.45 Aligned_cols=190 Identities=17% Similarity=0.234 Sum_probs=145.3
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcE----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF---------- 352 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~---------- 352 (611)
++.+.+|++|+|++.+++.|..++.. .+.++++||+||+|||||++|+++|+.+++.-
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 34567899999999999999998873 25567899999999999999999999987642
Q ss_pred --------------EeecchhhccccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 353 --------------FSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 353 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
+.++++ .+.....++.+++.+.. ....|++|||+|.+ .....
T Consensus 77 ~sCr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L--------------s~~A~ 136 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML--------------SKSAF 136 (709)
T ss_pred HHHHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc--------------CHHHH
Confidence 112111 11223456666665432 23459999999977 24567
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.||+.|+ ++.+.+.||++|+.+..+.+.+++ |+. .+.|+.++.++....++..+.+.++. ++..+..|++.+.
T Consensus 137 NALLKtLE--EPp~~v~fILaTtd~~kL~~TIrS--RC~-~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~ 211 (709)
T PRK08691 137 NAMLKTLE--EPPEHVKFILATTDPHKVPVTVLS--RCL-QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA 211 (709)
T ss_pred HHHHHHHH--hCCCCcEEEEEeCCccccchHHHH--HHh-hhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC
Confidence 89999998 466788889999999999888886 885 78888999999999998887766554 3445889999988
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGIV 510 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~~ 510 (611)
| +.+++.+++..+..+
T Consensus 212 G-slRdAlnLLDqaia~ 227 (709)
T PRK08691 212 G-SMRDALSLLDQAIAL 227 (709)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 7 788888888776654
No 123
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.7e-15 Score=163.76 Aligned_cols=163 Identities=24% Similarity=0.351 Sum_probs=113.0
Q ss_pred ccccCCc-HHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEcc
Q 007255 18 EEAIGGN-RAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVISP 86 (611)
Q Consensus 18 ~~~i~G~-~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~ 86 (611)
++.++|. ++.+..+.+.+.. +..+|-+|+|.||+|||.++.-+|+.. +..++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 5677777 7777777776632 344788899999999999999999876 234556665
Q ss_pred cccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEE
Q 007255 87 HSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (611)
Q Consensus 87 ~~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ 164 (611)
..+. ..+.++.+..++.+.+.+.. .+.+.||||||+|.+.......+ .....+.|-..+.. +.+.
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~---~~~gvILfigelh~lvg~g~~~~--~~d~~nlLkp~L~r--------g~l~ 318 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVES---GGGGVILFLGELHWLVGSGSNYG--AIDAANLLKPLLAR--------GGLW 318 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhc---CCCcEEEEecceeeeecCCCcch--HHHHHHhhHHHHhc--------CCeE
Confidence 5333 44567788888888887764 33578999999999987654411 22233333333322 1378
Q ss_pred EEEeecCcc-----cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcC
Q 007255 165 VVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK 209 (611)
Q Consensus 165 ii~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~ 209 (611)
+|++|+... .-+|++.+ ||+ .+.++.|+..+...|+......
T Consensus 319 ~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 319 CIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred EEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 898877422 44899998 997 7789999988877777765444
No 124
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=7.1e-16 Score=161.05 Aligned_cols=189 Identities=19% Similarity=0.228 Sum_probs=138.1
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------------
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------------- 80 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~-------------- 80 (611)
...|++++|++.+++.|..++.. -+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 37899999999999999888754 1234568999999999999999999998763
Q ss_pred ----------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHH
Q 007255 81 ----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM 150 (611)
Q Consensus 81 ----------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l 150 (611)
++.+++.. ......++.+.+.+......++..|+||||+|.|.. ..++.|+..+
T Consensus 82 ~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~----------~A~NALLKtL 145 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD----------QSFNALLKTL 145 (484)
T ss_pred HHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH----------HHHHHHHHHh
Confidence 12222110 111234555555554444445677999999998854 5678889998
Q ss_pred hcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCc
Q 007255 151 DSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYV 229 (611)
Q Consensus 151 ~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~ 229 (611)
++ ++.++++|.+|+.++.+.+.+++ |+. .+.|..++.++..+.++..+...++. .+..+..++..++|-
T Consensus 146 EE------Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd- 215 (484)
T PRK14956 146 EE------PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS- 215 (484)
T ss_pred hc------CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh-
Confidence 76 33468889999999999999999 985 79999999999999999888766544 233477788877765
Q ss_pred cccHHHHHHHHH
Q 007255 230 GADLEALCREAT 241 (611)
Q Consensus 230 ~~dl~~l~~~a~ 241 (611)
.|+..++++.+.
T Consensus 216 ~RdAL~lLeq~i 227 (484)
T PRK14956 216 VRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHHH
Confidence 455555555443
No 125
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.69 E-value=2.8e-16 Score=163.16 Aligned_cols=185 Identities=21% Similarity=0.260 Sum_probs=133.9
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcE---------------
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF--------------- 352 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~--------------- 352 (611)
.|++|+|++.+++.|++.+.....+. ...+.+.++++||+||||+|||++|+++|..+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 58999999999999999998644322 122344678999999999999999999999886642
Q ss_pred --------EeecchhhccccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHH
Q 007255 353 --------FSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTE 420 (611)
Q Consensus 353 --------~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ 420 (611)
..+.+.. . .-.-..++.+++.+.. ....|+||||+|.+. ....+.||+.
T Consensus 80 ~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~--------------~~aanaLLk~ 140 (394)
T PRK07940 80 LAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT--------------ERAANALLKA 140 (394)
T ss_pred hcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC--------------HHHHHHHHHH
Confidence 1111110 0 1123347777777653 223599999999882 4456899999
Q ss_pred hcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHH
Q 007255 421 MDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAEL 500 (611)
Q Consensus 421 l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i 500 (611)
|+ ++++++++|.+|+.++.+.|++++ |+. .+.|++|+.++..+.+.... .+ +......++..+.|..+..+
T Consensus 141 LE--ep~~~~~fIL~a~~~~~llpTIrS--Rc~-~i~f~~~~~~~i~~~L~~~~---~~-~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 141 VE--EPPPRTVWLLCAPSPEDVLPTIRS--RCR-HVALRTPSVEAVAEVLVRRD---GV-DPETARRAARASQGHIGRAR 211 (394)
T ss_pred hh--cCCCCCeEEEEECChHHChHHHHh--hCe-EEECCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHH
Confidence 98 566777777788889999999998 886 99999999999888876321 22 23456788899999665554
Q ss_pred HHH
Q 007255 501 EGL 503 (611)
Q Consensus 501 ~~~ 503 (611)
.-+
T Consensus 212 ~l~ 214 (394)
T PRK07940 212 RLA 214 (394)
T ss_pred HHh
Confidence 443
No 126
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=4.3e-16 Score=167.74 Aligned_cols=204 Identities=18% Similarity=0.191 Sum_probs=146.3
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS----------- 351 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~----------- 351 (611)
.+.+.+|++|+|++.+++.|..++.. .+.++++||+||+|||||++|+++|+.+++.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQE------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 45677899999999999999998873 2445789999999999999999999999764
Q ss_pred -------------EEeecchhhccccccchHHHHHHHHHHHH----hcCCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 352 -------------FFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 352 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
++.+++..- ..-..++.+.+.+. .....|+||||+|.+. ...+
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~a~ 136 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------REAF 136 (624)
T ss_pred HHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HHHH
Confidence 333332110 01122333332222 2234599999999882 4567
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.|++.|+ ++.+.+++|++||.++.+.+.+++ |+. ++.|+.++.++...+++..+.+..+. ++..+..+++.+.
T Consensus 137 naLLk~LE--EP~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~ 211 (624)
T PRK14959 137 NALLKTLE--EPPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAA 211 (624)
T ss_pred HHHHHHhh--ccCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 89999998 466788999999999999888887 886 78999999999999998776655542 4455788888887
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
| +.+++.+++.++. +. ....|+.+++..++
T Consensus 212 G-dlR~Al~lLeqll--~~----g~~~It~d~V~~~l 241 (624)
T PRK14959 212 G-SVRDSMSLLGQVL--AL----GESRLTIDGARGVL 241 (624)
T ss_pred C-CHHHHHHHHHHHH--Hh----cCCCcCHHHHHHHh
Confidence 7 5566666655432 11 23357777766665
No 127
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=5.1e-16 Score=166.46 Aligned_cols=204 Identities=15% Similarity=0.206 Sum_probs=147.0
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS----------- 351 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~----------- 351 (611)
.+.+.+|++++|++.+++.|...+.. .+.++++||+||+|+|||++|+++|+.+++.
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 34567899999999999999988873 2455679999999999999999999988752
Q ss_pred -------------EEeecchhhccccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 352 -------------FFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 352 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
++.+++..- . ....++.+.+.+.. ....|++|||+|.+ +....
T Consensus 77 ~sC~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l--------------s~~a~ 136 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHML--------------SKQSF 136 (546)
T ss_pred HHHHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhc--------------cHHHH
Confidence 222222110 1 12234455544432 23459999999987 24577
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.||+.|+ ++++.+.||++|+.+..+.+.+++ |+. .+.|..++.++....++..+++.++. ++..+..++..+.
T Consensus 137 naLLK~LE--epp~~v~fIL~Ttd~~kil~tI~S--Rc~-~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~ 211 (546)
T PRK14957 137 NALLKTLE--EPPEYVKFILATTDYHKIPVTILS--RCI-QLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK 211 (546)
T ss_pred HHHHHHHh--cCCCCceEEEEECChhhhhhhHHH--hee-eEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 89999998 577788888888889989888887 885 99999999999988888776665544 3445788888887
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
| +.+++.+.+..+..+.- ..++.+++...+
T Consensus 212 G-dlR~alnlLek~i~~~~------~~It~~~V~~~l 241 (546)
T PRK14957 212 G-SLRDALSLLDQAISFCG------GELKQAQIKQML 241 (546)
T ss_pred C-CHHHHHHHHHHHHHhcc------CCCCHHHHHHHH
Confidence 7 77777777776654321 235555555444
No 128
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=4.6e-16 Score=168.37 Aligned_cols=189 Identities=17% Similarity=0.171 Sum_probs=140.9
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc------------
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS------------ 351 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~------------ 351 (611)
+.+.+|++|+|++.+++.|..++.. .+.++.+||+||+|||||++|+++|+.++|.
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDA------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 4567899999999999999999873 2456778999999999999999999998753
Q ss_pred --------------EEeecchhhccccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHH
Q 007255 352 --------------FFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERL 413 (611)
Q Consensus 352 --------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~ 413 (611)
++.++++.. ..-..++.+.+.+.. ....|++|||+|.+- ...
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~A 134 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TAG 134 (584)
T ss_pred HHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HHH
Confidence 222222111 112334444444322 223499999999882 447
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhC
Q 007255 414 LSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEET 492 (611)
Q Consensus 414 ~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~ 492 (611)
.+.||+.|+ ++++.++||++|+.++.+.+++++ |+. .+.|..++.++..+.++..+++.++. ++..+..++..+
T Consensus 135 ~NALLK~LE--Epp~~~~fIL~tte~~kll~TI~S--Rc~-~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s 209 (584)
T PRK14952 135 FNALLKIVE--EPPEHLIFIFATTEPEKVLPTIRS--RTH-HYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG 209 (584)
T ss_pred HHHHHHHHh--cCCCCeEEEEEeCChHhhHHHHHH--hce-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 899999999 677899999999999999999988 875 89999999999998888777665543 334567777777
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 007255 493 ELFTGAELEGLCREAGIV 510 (611)
Q Consensus 493 ~g~s~~~i~~~~~~a~~~ 510 (611)
.| +.+++.+++.....+
T Consensus 210 ~G-dlR~aln~Ldql~~~ 226 (584)
T PRK14952 210 GG-SPRDTLSVLDQLLAG 226 (584)
T ss_pred CC-CHHHHHHHHHHHHhc
Confidence 76 777777777765443
No 129
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.3e-15 Score=164.59 Aligned_cols=190 Identities=18% Similarity=0.223 Sum_probs=139.0
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------------
Q 007255 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH------------- 80 (611)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~------------- 80 (611)
+.+.|++|+|++.+++.|..++.. -+.+..+||+||+|||||++++.+|+.+++.
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 337889999999999999998743 1234677999999999999999999998753
Q ss_pred -----------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHH
Q 007255 81 -----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (611)
Q Consensus 81 -----------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~ 149 (611)
+++++..+ ......++.+.+.+......++..|+||||+|.|.. ...+.|++.
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~----------~A~NALLKt 142 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN----------HAFNAMLKT 142 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH----------HHHHHHHHH
Confidence 22222211 112234566666555444445667999999998843 457889999
Q ss_pred HhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCC
Q 007255 150 MDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGY 228 (611)
Q Consensus 150 l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~ 228 (611)
|++. ..++.||.+||.++.|.+.+++ || ..+.|..++.++..++++..+...++.. +..+..++..++|-
T Consensus 143 LEEP------P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 143 LEEP------PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS 213 (830)
T ss_pred HHhc------CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 9873 3368899999999999999999 98 4899999999999999998887655442 33477788888775
Q ss_pred ccccHHHHHHHHH
Q 007255 229 VGADLEALCREAT 241 (611)
Q Consensus 229 ~~~dl~~l~~~a~ 241 (611)
. ++..+++..+.
T Consensus 214 m-RdALsLLdQAi 225 (830)
T PRK07003 214 M-RDALSLTDQAI 225 (830)
T ss_pred H-HHHHHHHHHHH
Confidence 3 44445555444
No 130
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=8.6e-16 Score=164.62 Aligned_cols=187 Identities=20% Similarity=0.251 Sum_probs=140.4
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc------------
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS------------ 351 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~------------ 351 (611)
+.+.+|++|+|++.+++.|..++.. ...++.+||+||||||||++|+++|+.+.+.
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 4567899999999999999998874 2445678999999999999999999998642
Q ss_pred -----------EEeecchhhccccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHH
Q 007255 352 -----------FFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLST 416 (611)
Q Consensus 352 -----------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ 416 (611)
++.+++++ ......++.+...+.. ..+.|++|||+|.+ ....++.
T Consensus 76 c~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l--------------s~~a~na 135 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM--------------SKSAFNA 135 (504)
T ss_pred hHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc--------------CHHHHHH
Confidence 33444321 1123345555444432 24569999999866 2456788
Q ss_pred HHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCC
Q 007255 417 LLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELF 495 (611)
Q Consensus 417 ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~ 495 (611)
|++.|+ ++...+++|++|+.++.+.+.+.+ |+. .+.|+.|+.++....++..+.+.++. ++..+..+++.+.|
T Consensus 136 LLk~LE--ep~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G- 209 (504)
T PRK14963 136 LLKTLE--EPPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG- 209 (504)
T ss_pred HHHHHH--hCCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 999998 456678888899999999999988 887 89999999999999998777655544 34557889998887
Q ss_pred CHHHHHHHHHHHH
Q 007255 496 TGAELEGLCREAG 508 (611)
Q Consensus 496 s~~~i~~~~~~a~ 508 (611)
+.+++.+.++...
T Consensus 210 dlR~aln~Lekl~ 222 (504)
T PRK14963 210 AMRDAESLLERLL 222 (504)
T ss_pred CHHHHHHHHHHHH
Confidence 6677777666654
No 131
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=6e-16 Score=168.54 Aligned_cols=189 Identities=22% Similarity=0.288 Sum_probs=145.2
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc------------
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS------------ 351 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~------------ 351 (611)
+.+.+|++++|++.+.+.|+..+.. .+.++.+||+||+|||||++|+.+|..++|.
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 4567899999999999999999873 2456789999999999999999999998653
Q ss_pred ------------EEeecchhhccccccchHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHHH
Q 007255 352 ------------FFSLSGAELYSMYVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLLS 415 (611)
Q Consensus 352 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 415 (611)
++.++++. +.....++.+...+... ...|++|||+|.+. ....+
T Consensus 78 ~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~n 137 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAFN 137 (559)
T ss_pred HHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHH
Confidence 23333211 12344566776665532 23599999999882 34678
Q ss_pred HHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCC
Q 007255 416 TLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETEL 494 (611)
Q Consensus 416 ~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 494 (611)
.|++.|+ +++..+++|++|+.|+.+.+.+++ |+. .+.|+.|+.++....++..+++.++. ++..+..++..+.|
T Consensus 138 aLLKtLE--epp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G 212 (559)
T PRK05563 138 ALLKTLE--EPPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG 212 (559)
T ss_pred HHHHHhc--CCCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999998 577788999999999999999988 887 78899999999999998777665544 33557888888887
Q ss_pred CCHHHHHHHHHHHHHH
Q 007255 495 FTGAELEGLCREAGIV 510 (611)
Q Consensus 495 ~s~~~i~~~~~~a~~~ 510 (611)
+.+++.+.+..+..+
T Consensus 213 -~~R~al~~Ldq~~~~ 227 (559)
T PRK05563 213 -GMRDALSILDQAISF 227 (559)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 788888877766544
No 132
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=7.9e-16 Score=164.30 Aligned_cols=189 Identities=17% Similarity=0.222 Sum_probs=138.7
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------------
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------------- 80 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~-------------- 80 (611)
.+.|++|+|++.+++.|.+++.. -+.+..+||+||+|||||++++.+|+.+++.
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 37889999999999999998854 1244678999999999999999999999762
Q ss_pred ---------------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHH
Q 007255 81 ---------------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQ 145 (611)
Q Consensus 81 ---------------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ 145 (611)
++.+++.+ ......++++.+........++..|+||||+|.|.. ...+.
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~----------~AaNA 143 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN----------HAFNA 143 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH----------HHHHH
Confidence 11222110 112344666666655444456678999999998854 55788
Q ss_pred HHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcc-cHHHHHHh
Q 007255 146 LFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATS 224 (611)
Q Consensus 146 ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~~~~la~~ 224 (611)
|++.|++ .+.+++||.+||.++.|.+.+++ ||. .+.|..++.++..+.++..+...++..+. .+..++..
T Consensus 144 LLKTLEE------PP~~v~FILaTtep~kLlpTIrS--RCq-~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 144 MLKTLEE------PPEHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHhhcc------CCCCceEEEEeCChHhhhhHHHH--HHH-hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999887 33467889999999999999999 884 89999999999999999887655544332 36777777
Q ss_pred ccCCccccHHHHHHHHH
Q 007255 225 CNGYVGADLEALCREAT 241 (611)
Q Consensus 225 ~~g~~~~dl~~l~~~a~ 241 (611)
++|- .++..++++.+.
T Consensus 215 A~Gs-~RdALsLLdQai 230 (700)
T PRK12323 215 AQGS-MRDALSLTDQAI 230 (700)
T ss_pred cCCC-HHHHHHHHHHHH
Confidence 7764 445555555443
No 133
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=6.1e-16 Score=173.62 Aligned_cols=188 Identities=18% Similarity=0.148 Sum_probs=138.8
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS----------- 351 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~----------- 351 (611)
++...+|++|+|++.+++.|..++.. .+.++.+||+||+|||||++|+++|+.++|.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 34567899999999999999998873 2455779999999999999999999999763
Q ss_pred ---------------EEeecchhhccccccchHHHHHHHHHHHH----hcCCcEEEEcccccccccCCCCCCCCcchhHH
Q 007255 352 ---------------FFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGER 412 (611)
Q Consensus 352 ---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~ 412 (611)
++.++..+. ..-..++.+.+.+. .....|+||||+|.| +..
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l--------------t~~ 135 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV--------------TPQ 135 (824)
T ss_pred HHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc--------------CHH
Confidence 122222110 01223444433322 234459999999988 246
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHh
Q 007255 413 LLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEE 491 (611)
Q Consensus 413 ~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~ 491 (611)
..|.||+.|+ ++...++||++|+.++.|.+.+++ |+. ++.|..++.++...+++..+++.++. ++..+..++..
T Consensus 136 a~NaLLK~LE--EpP~~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~ 210 (824)
T PRK07764 136 GFNALLKIVE--EPPEHLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRA 210 (824)
T ss_pred HHHHHHHHHh--CCCCCeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7899999998 577889999999999998888887 886 88999999999999998777655554 33446777777
Q ss_pred CCCCCHHHHHHHHHHHH
Q 007255 492 TELFTGAELEGLCREAG 508 (611)
Q Consensus 492 ~~g~s~~~i~~~~~~a~ 508 (611)
+.| +.+++.+.+.+..
T Consensus 211 sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 211 GGG-SVRDSLSVLDQLL 226 (824)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 776 6777777666554
No 134
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=5.7e-16 Score=167.54 Aligned_cols=190 Identities=17% Similarity=0.213 Sum_probs=142.7
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcE----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF---------- 352 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~---------- 352 (611)
.+.+.+|++++|++.+++.|..++.. .+.++++||+||||+|||++|+++|..+++..
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 34567899999999999999998873 24557789999999999999999999997631
Q ss_pred --------------EeecchhhccccccchHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 353 --------------FSLSGAELYSMYVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 353 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
+.++++. ......++.+...+... ...|++|||+|.+. ....
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~ 136 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAF 136 (527)
T ss_pred HHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHH
Confidence 1122110 11234566666665422 23599999999872 4567
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.||+.|+ ++++.+.+|++|+.++.+.+.+++ |+. .+.|+.++.++....+...+.+.++. ++..+..+++.+.
T Consensus 137 naLLK~LE--epp~~~~fIL~t~d~~kil~tI~S--Rc~-~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~ 211 (527)
T PRK14969 137 NAMLKTLE--EPPEHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA 211 (527)
T ss_pred HHHHHHHh--CCCCCEEEEEEeCChhhCchhHHH--HHH-HHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 89999998 577888999999999988888877 885 89999999999998888766554444 3345788888888
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGIV 510 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~~ 510 (611)
| +.+++.+++..+..+
T Consensus 212 G-slr~al~lldqai~~ 227 (527)
T PRK14969 212 G-SMRDALSLLDQAIAY 227 (527)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 7 778888888766544
No 135
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.3e-15 Score=161.10 Aligned_cols=164 Identities=24% Similarity=0.335 Sum_probs=129.9
Q ss_pred ccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc-------
Q 007255 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS------- 362 (611)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~------- 362 (611)
.+-.|++.+|+.+.+++..-... +-....-++|+||||+|||+|++.+|..+|..|+.++.+-+.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 35579999999999998741111 1112234789999999999999999999999999998865544
Q ss_pred --ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-------------CC
Q 007255 363 --MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-------------QA 427 (611)
Q Consensus 363 --~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------~~ 427 (611)
-|+|.-.+.+-+-++.+...+| ++++||||.+...- .+++ .++||.-||.-. .-
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~------rGDP----aSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF------RGDP----ASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC------CCCh----HHHHHhhcCHhhcCchhhccccCccch
Confidence 3999998888888999999999 99999999995331 1222 266776666311 12
Q ss_pred CCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHh
Q 007255 428 KGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHT 474 (611)
Q Consensus 428 ~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~ 474 (611)
.+|+||+|+|..+.|+.+|+. |++ +|.++-++.++..+|-+.|+
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhc
Confidence 369999999999999999999 998 99999999999999999765
No 136
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=6.5e-16 Score=165.53 Aligned_cols=189 Identities=19% Similarity=0.233 Sum_probs=141.8
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS----------- 351 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~----------- 351 (611)
.+.+.+|++++|++.+++.|..++.. .+.++++||+||+|+|||++|+++|+.+.|.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 34577899999999999999988763 2456789999999999999999999998642
Q ss_pred -------------EEeecchhhccccccchHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 352 -------------FFSLSGAELYSMYVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 352 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
++.++++.. ..-..++.+.+.+... ...|++|||+|.+- ....
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------------~~A~ 136 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------------TSAW 136 (605)
T ss_pred HHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------------HHHH
Confidence 222322110 1223456665554432 23499999999872 3456
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.|++.|+ ++++.+++|++|+.++.+.+++++ |+. .+.|+.|+.++....++..+.+.+.. ++..+..++..+.
T Consensus 137 NaLLKtLE--EPp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~ 211 (605)
T PRK05896 137 NALLKTLE--EPPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLAD 211 (605)
T ss_pred HHHHHHHH--hCCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 89999998 577788999999999999999988 887 89999999999999988776655432 3455788888888
Q ss_pred CCCHHHHHHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGI 509 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~ 509 (611)
| +.+++.+.+..+..
T Consensus 212 G-dlR~AlnlLekL~~ 226 (605)
T PRK05896 212 G-SLRDGLSILDQLST 226 (605)
T ss_pred C-cHHHHHHHHHHHHh
Confidence 7 67777777776443
No 137
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=8e-16 Score=168.02 Aligned_cols=194 Identities=18% Similarity=0.226 Sum_probs=144.5
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEee---cc--
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL---SG-- 357 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~---~~-- 357 (611)
.+.+.+|++|+|++.+++.|...+.. .+.++++||+||+|+|||++|+++|..+.|.-... .+
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 34677899999999999999998873 24567899999999999999999999987642100 00
Q ss_pred --------hhhcccccc---chHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhc
Q 007255 358 --------AELYSMYVG---ESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (611)
Q Consensus 358 --------~~~~~~~~g---~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 422 (611)
.++.. ..+ .+...++.+.+.+... ...|++|||+|.+. ....+.||+.|+
T Consensus 79 C~~~~~~~~Dvie-idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLKtLE 143 (725)
T PRK07133 79 CIENVNNSLDIIE-MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLKTLE 143 (725)
T ss_pred HHHhhcCCCcEEE-EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHHHhh
Confidence 01100 001 1234467777666532 33599999999872 346789999998
Q ss_pred CCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHHhCCCCCHHHHH
Q 007255 423 GLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGD-DVDLRSIAEETELFTGAELE 501 (611)
Q Consensus 423 ~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~s~~~i~ 501 (611)
++++.+++|++|+.++.+.+.+++ |+. .+.|.+|+.++....++..+.+.++.. +..+..+|..+.| +.+++.
T Consensus 144 --EPP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Al 217 (725)
T PRK07133 144 --EPPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDAL 217 (725)
T ss_pred --cCCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 577889999999999999999988 887 899999999999999987766555443 3347888888887 677777
Q ss_pred HHHHHHHH
Q 007255 502 GLCREAGI 509 (611)
Q Consensus 502 ~~~~~a~~ 509 (611)
.++..+..
T Consensus 218 slLekl~~ 225 (725)
T PRK07133 218 SIAEQVSI 225 (725)
T ss_pred HHHHHHHH
Confidence 77776543
No 138
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.67 E-value=2.8e-16 Score=165.28 Aligned_cols=196 Identities=20% Similarity=0.237 Sum_probs=153.5
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEE---------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF--------- 353 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~--------- 353 (611)
.+.+..|++++|++.+.+.|...+.. -+..+++||.||.|||||++|+.+|..++|.--
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 34567899999999999999999884 356689999999999999999999999977631
Q ss_pred ----eecchhhcc--ccc---cchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHH
Q 007255 354 ----SLSGAELYS--MYV---GESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTE 420 (611)
Q Consensus 354 ----~~~~~~~~~--~~~---g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ 420 (611)
.++.+.+.+ .+. ..+-..++.+.+.+.- ....|.+|||+|.+ +...+|+||+.
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML--------------S~~afNALLKT 142 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML--------------SKQAFNALLKT 142 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh--------------hHHHHHHHhcc
Confidence 111111110 000 1123346666665542 23359999999988 36789999999
Q ss_pred hcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcc-cHHHHHHhCCCCCHHH
Q 007255 421 MDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDV-DLRSIAEETELFTGAE 499 (611)
Q Consensus 421 l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~g~s~~~ 499 (611)
|+ +++..|.||++|+.|+.+++.+++ |++ .+.|...+.++....+...+.+..+..+. .+..+|+..+| |.+|
T Consensus 143 LE--EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RD 216 (515)
T COG2812 143 LE--EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRD 216 (515)
T ss_pred cc--cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chhh
Confidence 99 799999999999999999999998 888 88899999999999999888887777554 47889999998 8899
Q ss_pred HHHHHHHHHHH
Q 007255 500 LEGLCREAGIV 510 (611)
Q Consensus 500 i~~~~~~a~~~ 510 (611)
...++..+...
T Consensus 217 alslLDq~i~~ 227 (515)
T COG2812 217 ALSLLDQAIAF 227 (515)
T ss_pred HHHHHHHHHHc
Confidence 98888877665
No 139
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.67 E-value=2.5e-15 Score=161.17 Aligned_cols=229 Identities=21% Similarity=0.305 Sum_probs=153.3
Q ss_pred CCccccccc-ch--hHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-----CCcEEeec
Q 007255 285 PKVTWEDIG-GL--RDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLS 356 (611)
Q Consensus 285 ~~~~~~~i~-g~--~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~ 356 (611)
+..+|++.+ |. ..+...+.++...| + ...++++||||||||||+|++++|+++ +..+++++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 455777743 43 22444455544431 1 223569999999999999999999998 56688899
Q ss_pred chhhccccccchHH-HHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEe
Q 007255 357 GAELYSMYVGESEA-LLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAA 435 (611)
Q Consensus 357 ~~~~~~~~~g~~~~-~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~ 435 (611)
+.++...+...... ....+.+.. ..+++|+|||+|.+.++. .....|+..++.+...++.++|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~~~------------~~~~~l~~~~n~l~~~~~~iiits 251 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKY--RSVDVLLIDDIQFLAGKE------------RTQEEFFHTFNALHEAGKQIVLTS 251 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHH--hcCCEEEEehhhhhcCCH------------HHHHHHHHHHHHHHHCCCcEEEEC
Confidence 88876654433221 112222222 257799999999885431 122344444443334455677766
Q ss_pred cCCCcc---cchhccCCCCcc--ceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007255 436 TNRPHA---IDAALMRPGRFD--LVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGI 509 (611)
Q Consensus 436 tn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~ 509 (611)
+..|.. +++.+.+ ||. ..+.++.|+.++|.+|++..+...+.. ++..++.+|....| +.+++..++.....
T Consensus 252 ~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~ 328 (450)
T PRK00149 252 DRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIA 328 (450)
T ss_pred CCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHH
Confidence 666665 6678887 886 589999999999999999877654433 44458899998887 88999999988776
Q ss_pred HHHHhhcccccccHHHHHHHHhhc-C---CCCCHHHHHH
Q 007255 510 VALREDISATAVRNRHFQTVKDSL-K---PALTKEEIDS 544 (611)
Q Consensus 510 ~a~~~~~~~~~i~~~~~~~~l~~~-~---~~~~~~~~~~ 544 (611)
.+... .++++...+..++..+ . ..++.++|..
T Consensus 329 ~~~~~---~~~it~~~~~~~l~~~~~~~~~~~~~~~i~~ 364 (450)
T PRK00149 329 YASLT---GKPITLELAKEALKDLLAAQKKKITIENIQK 364 (450)
T ss_pred HHHhh---CCCCCHHHHHHHHHHhhccCCCCCCHHHHHH
Confidence 66543 4678999988888765 2 2355665433
No 140
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=5e-16 Score=169.96 Aligned_cols=204 Identities=18% Similarity=0.247 Sum_probs=150.2
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS----------- 351 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~----------- 351 (611)
.+.+.+|++|+|++++++.|...+.. .+.++.+|||||+|+|||++|+++|+.+++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 34567899999999999999998873 2456789999999999999999999998753
Q ss_pred -------------EEeecchhhccccccchHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 352 -------------FFSLSGAELYSMYVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 352 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
++.+++.+ ......++.+.+.+... ...|++|||+|.+. ....
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a~ 136 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNAF 136 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHHH
Confidence 22222211 11233466666655422 22499999999882 4567
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.|++.|+ ++++.++||++|+.++.+.+.+++ |+. .+.|..++.++....+...+++.++. ++..+..++..+.
T Consensus 137 naLLk~LE--epp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~ 211 (576)
T PRK14965 137 NALLKTLE--EPPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGD 211 (576)
T ss_pred HHHHHHHH--cCCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 99999998 577889999999999999999988 886 88999999999888888776655543 3455788888888
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
| +-+++.+.+..+..+.- ..++.+++...+
T Consensus 212 G-~lr~al~~Ldqliay~g------~~It~edV~~ll 241 (576)
T PRK14965 212 G-SMRDSLSTLDQVLAFCG------DAVGDDDVAELL 241 (576)
T ss_pred C-CHHHHHHHHHHHHHhcc------CCCCHHHHHHHh
Confidence 7 66777777765544422 125666655543
No 141
>PLN03025 replication factor C subunit; Provisional
Probab=99.67 E-value=3.5e-15 Score=152.93 Aligned_cols=184 Identities=20% Similarity=0.167 Sum_probs=130.4
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCC-----cEEeecc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA-----SFFSLSG 357 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~-----~~~~~~~ 357 (611)
.+.+.++++++|++++.+.|+.++.. + . ..++|||||||||||++|+++|+++.+ .++.+++
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~-~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARD-----------G-N-MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhc-----------C-C-CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 44567899999999999999887653 1 2 235999999999999999999999833 3566666
Q ss_pred hhhccccccchHHHHHHHHHHHHh-------cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCe
Q 007255 358 AELYSMYVGESEALLRNTFQRARL-------AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGI 430 (611)
Q Consensus 358 ~~~~~~~~g~~~~~~~~~~~~a~~-------~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 430 (611)
++..+ ...++...+.... ....|++|||+|.+. ....+.|++.|+. ..+.+
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt--------------~~aq~aL~~~lE~--~~~~t 130 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT--------------SGAQQALRRTMEI--YSNTT 130 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC--------------HHHHHHHHHHHhc--ccCCc
Confidence 55422 1123333222111 235699999999883 3346778888873 34556
Q ss_pred EEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHH
Q 007255 431 LVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCR 505 (611)
Q Consensus 431 ~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~ 505 (611)
.+|.+||.++.+.+++.+ |+. .+.|+.|+.++....++..+++.++. ++..+..++..+.| +.+.+.+.++
T Consensus 131 ~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 131 RFALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred eEEEEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 677789999999899988 875 89999999999999998776655443 34568888888776 4444444444
No 142
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.66 E-value=3.1e-15 Score=158.59 Aligned_cols=201 Identities=23% Similarity=0.316 Sum_probs=142.3
Q ss_pred CCCcccccccchhHHHHH---HHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhh
Q 007255 284 IPKVTWEDIGGLRDLKKK---LQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~---l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~ 360 (611)
..+.++++++|++++... +.+.+.. ....+++|+||||||||++|+++|+..+..++.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 345679999999998655 7777653 223579999999999999999999999999999887532
Q ss_pred ccccccchHHHHHHHHHHHH----hcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEec
Q 007255 361 YSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAAT 436 (611)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t 436 (611)
....++.+++.+. .....||||||+|.+. ....+.|+..++ .+.+++|++|
T Consensus 73 -------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~--------------~~~q~~LL~~le----~~~iilI~at 127 (413)
T PRK13342 73 -------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN--------------KAQQDALLPHVE----DGTITLIGAT 127 (413)
T ss_pred -------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC--------------HHHHHHHHHHhh----cCcEEEEEeC
Confidence 2233455555543 2356799999999872 334567777775 2567777776
Q ss_pred CC--CcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCC--C--CCcccHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007255 437 NR--PHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMK--V--GDDVDLRSIAEETELFTGAELEGLCREAGIV 510 (611)
Q Consensus 437 n~--~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~--~--~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~ 510 (611)
+. ...+++++++ |+ ..+.|+.++.++...+++..+.... . .++..+..+++.+.| +.+.+.+++..+...
T Consensus 128 t~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~ 203 (413)
T PRK13342 128 TENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG 203 (413)
T ss_pred CCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 43 4478999998 88 4889999999999999987654321 1 233446788888766 566666666655432
Q ss_pred HHHhhcccccccHHHHHHHHhhc
Q 007255 511 ALREDISATAVRNRHFQTVKDSL 533 (611)
Q Consensus 511 a~~~~~~~~~i~~~~~~~~l~~~ 533 (611)
...|+.+++..++...
T Consensus 204 -------~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 204 -------VDSITLELLEEALQKR 219 (413)
T ss_pred -------cCCCCHHHHHHHHhhh
Confidence 2457777777776543
No 143
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.66 E-value=1.7e-15 Score=164.50 Aligned_cols=218 Identities=20% Similarity=0.267 Sum_probs=149.2
Q ss_pred ccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------C
Q 007255 280 VTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------E 349 (611)
Q Consensus 280 ~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~ 349 (611)
+.....+.+|++++|++...+.+...+.. +.+.++||+||||||||++|++++.++ +
T Consensus 55 ~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~ 121 (531)
T TIGR02902 55 LSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEG 121 (531)
T ss_pred HHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCC
Confidence 33345567899999999999888865432 234579999999999999999998753 3
Q ss_pred CcEEeecchhhc--c-----ccccchHHHH---HHHH----------HHHHhcCCcEEEEcccccccccCCCCCCCCcch
Q 007255 350 ASFFSLSGAELY--S-----MYVGESEALL---RNTF----------QRARLAAPSIIFFDEADVVGAKRGGSSSTSITV 409 (611)
Q Consensus 350 ~~~~~~~~~~~~--~-----~~~g~~~~~~---~~~~----------~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~ 409 (611)
.+|+.+++.... . ...+.....+ ...| ......+..+|||||+|.+.
T Consensus 122 ~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~------------- 188 (531)
T TIGR02902 122 AAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELH------------- 188 (531)
T ss_pred CCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCC-------------
Confidence 678888875321 1 1011000000 0000 01112345699999999882
Q ss_pred hHHHHHHHHHHhcCCC---------------------------CCCCeEEEEecCCCcccchhccCCCCccceeecCCCC
Q 007255 410 GERLLSTLLTEMDGLE---------------------------QAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPD 462 (611)
Q Consensus 410 ~~~~~~~ll~~l~~~~---------------------------~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~ 462 (611)
...++.|++.|+.-. +.+-.++++||+.|+.+++++++ |+. .++|++++
T Consensus 189 -~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~ 264 (531)
T TIGR02902 189 -PVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLL 264 (531)
T ss_pred -HHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCC
Confidence 456677777664210 11124455566789999999998 986 78899999
Q ss_pred HHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHh
Q 007255 463 LEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKD 531 (611)
Q Consensus 463 ~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~ 531 (611)
.+++..|++..+++..+. ++..++.++..+. +++++.++++.|...+..+. ...|+.+|+..++.
T Consensus 265 ~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~--~~~It~~dI~~vl~ 330 (531)
T TIGR02902 265 DEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEG--RKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCC--CcEEcHHHHHHHhC
Confidence 999999999888776544 3344666666554 78999999999988776543 45799999999985
No 144
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.66 E-value=1.8e-15 Score=172.06 Aligned_cols=168 Identities=27% Similarity=0.395 Sum_probs=121.6
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccc--------
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH-------- 90 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~-------- 90 (611)
+++.|++++++.+.+++...... +...+.+++|+||||||||++++++|+.++.+++.++.+...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 35889999999999977543221 112335899999999999999999999999999999765432
Q ss_pred -cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCC---------CCCCCC
Q 007255 91 -KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK---------PSKTSV 160 (611)
Q Consensus 91 -~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~ 160 (611)
..+.|.....+...|..+.. ..| |++|||||.+.+...+ ...+.|+..+|... ......
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~----~~~-villDEidk~~~~~~~------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKT----KNP-LFLLDEIDKIGSSFRG------DPASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CCceeCCCCchHHHHHHHhCc----CCC-EEEEechhhcCCccCC------CHHHHHHHhcCHHhcCccccccCCceecc
Confidence 23445445555555655432 224 8999999999864321 12456677666311 111112
Q ss_pred CcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhh
Q 007255 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYT 207 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~ 207 (611)
.++++|+|||..+.+++++++ ||. .|.|+.|+.+++.+|++.++
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 468999999999999999998 995 89999999999999998765
No 145
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.66 E-value=3.9e-15 Score=157.89 Aligned_cols=203 Identities=21% Similarity=0.292 Sum_probs=140.2
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh-----CCcEEeecchhhccccccchHH-HHHHHHHHHHhcCCcEEEEcccccccc
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSMYVGESEA-LLRNTFQRARLAAPSIIFFDEADVVGA 397 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~a~~~~p~il~iDeid~l~~ 397 (611)
.++++||||+|+|||+|++++++++ +..++++++.++...+...... .+..+.+.. ..+++|+|||+|.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcC
Confidence 4568999999999999999999987 5778899988876544322111 112222222 2367999999998854
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcc---cchhccCCCCcc--ceeecCCCCHHHHHHHHHH
Q 007255 398 KRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHA---IDAALMRPGRFD--LVLYVPPPDLEARHEILRV 472 (611)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~il~~ 472 (611)
+. .....|+..++.+...++.++|+++..|.. +++.+.+ ||. ..+.++.|+.++|..|++.
T Consensus 214 ~~------------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 214 KE------------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CH------------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHH
Confidence 31 122344444443334455677766666765 4567776 886 5799999999999999998
Q ss_pred HhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhc----CCCCCHHHHHHHH
Q 007255 473 HTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSL----KPALTKEEIDSYS 546 (611)
Q Consensus 473 ~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~----~~~~~~~~~~~~~ 546 (611)
.++..+.. ++..++.+|+...+ +.++++.++......+... .++++......++... ++.++.+.|....
T Consensus 280 ~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~---~~~it~~~~~~~L~~~~~~~~~~it~~~I~~~V 354 (405)
T TIGR00362 280 KAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLT---GKPITLELAKEALKDLLRAKKKEITIENIQEVV 354 (405)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhccccCCCCCHHHHHHHH
Confidence 87665544 44557889988887 7899999999887766543 4678888888888654 2346666654433
No 146
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=4.5e-15 Score=157.87 Aligned_cols=178 Identities=19% Similarity=0.279 Sum_probs=127.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------------
Q 007255 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH------------- 80 (611)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~------------- 80 (611)
+.+.|++++|++.+++.|...+... +.+.++||+||||||||++|+.+|+.+++.
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 3467899999999999888876431 245679999999999999999999998752
Q ss_pred -----------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHH
Q 007255 81 -----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (611)
Q Consensus 81 -----------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~ 149 (611)
++.++++. ......++.+.+.+...+..++..|++|||+|.+.. ..+..|+..
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~----------~a~~~LLk~ 140 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK----------EAFNALLKT 140 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH----------HHHHHHHHH
Confidence 33333321 111234555555554444445677999999998843 446778888
Q ss_pred HhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCC
Q 007255 150 MDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGY 228 (611)
Q Consensus 150 l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~ 228 (611)
++.. ++++++|++|+.+..+++++++ |+. .+.|.+++.++...+++..+...+..- +..+..++..+.|-
T Consensus 141 LE~p------~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~Gd 211 (472)
T PRK14962 141 LEEP------PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGG 211 (472)
T ss_pred HHhC------CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 8752 2356777777777899999998 884 899999999999999998876544332 23477788776653
No 147
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.7e-15 Score=158.85 Aligned_cols=190 Identities=19% Similarity=0.215 Sum_probs=139.0
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------------
Q 007255 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH------------- 80 (611)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~------------- 80 (611)
+.+.|++++|++.+++.|..++.. -+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 346789999999999999998753 1345788999999999999999999998762
Q ss_pred -----------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHH
Q 007255 81 -----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (611)
Q Consensus 81 -----------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~ 149 (611)
++.+++++ ......++.+...+...+..++..|+||||+|.|.. ...+.|+..
T Consensus 78 C~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~----------~A~NALLKt 141 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST----------HSFNALLKT 141 (702)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH----------HHHHHHHHH
Confidence 22233221 112344566665554444445678999999998854 457788999
Q ss_pred HhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCC
Q 007255 150 MDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGY 228 (611)
Q Consensus 150 l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~ 228 (611)
++.. +.++.+|.+|+.+..+.+.+++ |+. .+.|.+++.++..+.++..+...+...+ ..+..++..++|
T Consensus 142 LEEP------P~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G- 211 (702)
T PRK14960 142 LEEP------PEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG- 211 (702)
T ss_pred HhcC------CCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8863 2356778888888889999988 884 8999999999999999988876655433 347777777765
Q ss_pred ccccHHHHHHHHH
Q 007255 229 VGADLEALCREAT 241 (611)
Q Consensus 229 ~~~dl~~l~~~a~ 241 (611)
+.+++.+++..++
T Consensus 212 dLRdALnLLDQaI 224 (702)
T PRK14960 212 SLRDALSLTDQAI 224 (702)
T ss_pred CHHHHHHHHHHHH
Confidence 4566666666554
No 148
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=3.2e-15 Score=159.39 Aligned_cols=191 Identities=17% Similarity=0.192 Sum_probs=143.6
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS----------- 351 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~----------- 351 (611)
.+.+.+|++++|++.+++.|...+.. .+.++.+|||||+|+|||++|+++|+.+.+.
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDN------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 34567899999999999999998863 2456778999999999999999999998432
Q ss_pred -------------EEeecchhhccccccchHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 352 -------------FFSLSGAELYSMYVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 352 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
++.+++++- ..-..++.+....... ...|++|||+|.+ +....
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L--------------t~~A~ 134 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML--------------TKEAF 134 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC--------------CHHHH
Confidence 222222110 0123455555443321 1249999999987 35678
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.||+.|+ ++++.+.||++|+.+..+.+++++ |+. .++|.+++.++....++..++..++. ++..+..++..+.
T Consensus 135 NALLK~LE--Epp~~t~FIL~ttd~~kL~~tI~S--Rc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~ 209 (535)
T PRK08451 135 NALLKTLE--EPPSYVKFILATTDPLKLPATILS--RTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGN 209 (535)
T ss_pred HHHHHHHh--hcCCceEEEEEECChhhCchHHHh--hce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 99999998 467778888889999999999998 876 89999999999888888776655443 3456788999888
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGIVA 511 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~~a 511 (611)
| +.+++.+.+..+..++
T Consensus 210 G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 210 G-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred C-cHHHHHHHHHHHHHhc
Confidence 8 8888888888776654
No 149
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.5e-15 Score=160.55 Aligned_cols=196 Identities=17% Similarity=0.209 Sum_probs=140.1
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEe--------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFS-------- 354 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~-------- 354 (611)
.+.+.+|++++|++.+.+.|...+.. ...++++|||||+|+|||++|+++|..+++.--.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 34567899999999999999998873 2456778999999999999999999998752100
Q ss_pred ecc--------hhhcc--ccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHH
Q 007255 355 LSG--------AELYS--MYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTE 420 (611)
Q Consensus 355 ~~~--------~~~~~--~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ 420 (611)
.++ .++.. ......-..++.+.+.+.. ....|++|||+|.+. ....+.|++.
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~naLLk~ 142 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNALLKT 142 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHHHHHH
Confidence 000 01100 0000112335555555442 234599999999772 3456889999
Q ss_pred hcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHH
Q 007255 421 MDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAE 499 (611)
Q Consensus 421 l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~ 499 (611)
|+ +++..+++|++|+.++.+.+++.+ |+. .+.|++|+.++....++..++..++. ++..+..++..+.| +.++
T Consensus 143 LE--epp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~ 216 (486)
T PRK14953 143 LE--EPPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRD 216 (486)
T ss_pred Hh--cCCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 98 466677888888888889888887 886 79999999999999999877766554 33457888888877 6777
Q ss_pred HHHHHHHHHHH
Q 007255 500 LEGLCREAGIV 510 (611)
Q Consensus 500 i~~~~~~a~~~ 510 (611)
+.+.+..+...
T Consensus 217 al~~Ldkl~~~ 227 (486)
T PRK14953 217 AASLLDQASTY 227 (486)
T ss_pred HHHHHHHHHHh
Confidence 77777766543
No 150
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.65 E-value=1.7e-14 Score=136.58 Aligned_cols=206 Identities=23% Similarity=0.294 Sum_probs=149.2
Q ss_pred cccccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CC
Q 007255 3 SKGRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GA 79 (611)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~ 79 (611)
+.+.+.+.......++++++|.+.+++.|.+.....+. | .+.+|+||+|+.|||||++++++..++ |.
T Consensus 11 ~~~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GL 81 (249)
T PF05673_consen 11 NSGYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGL 81 (249)
T ss_pred CCCcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCc
Confidence 35667788888888999999999999999887755433 2 366899999999999999999999877 56
Q ss_pred cEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCC
Q 007255 80 HLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTS 159 (611)
Q Consensus 80 ~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 159 (611)
.++.|...++.. +..+++..... ..+-|||+||+- +...+ .-...|..+|++.-.. .
T Consensus 82 RlIev~k~~L~~---------l~~l~~~l~~~---~~kFIlf~DDLs--Fe~~d-------~~yk~LKs~LeGgle~--~ 138 (249)
T PF05673_consen 82 RLIEVSKEDLGD---------LPELLDLLRDR---PYKFILFCDDLS--FEEGD-------TEYKALKSVLEGGLEA--R 138 (249)
T ss_pred eEEEECHHHhcc---------HHHHHHHHhcC---CCCEEEEecCCC--CCCCc-------HHHHHHHHHhcCcccc--C
Confidence 788888766643 34455544432 247899999973 32221 2346677778775433 4
Q ss_pred CCcEEEEEeecCccccc---------------------HHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-cc
Q 007255 160 VPHVVVVASTNRVDAID---------------------PALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VD 217 (611)
Q Consensus 160 ~~~v~ii~ttn~~~~l~---------------------~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~ 217 (611)
+.+|++.+|+|+.+.++ +.+.-..||...+.|.+|+.++..+|+++++...++..+ ..
T Consensus 139 P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~ 218 (249)
T PF05673_consen 139 PDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEE 218 (249)
T ss_pred CCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 56899999999854222 222223499999999999999999999999987776654 23
Q ss_pred H----HHHHHhccCCccccHHHHHHHH
Q 007255 218 L----EAIATSCNGYVGADLEALCREA 240 (611)
Q Consensus 218 ~----~~la~~~~g~~~~dl~~l~~~a 240 (611)
+ ...+..-.|.||+...++++..
T Consensus 219 l~~~Al~wa~~rg~RSGRtA~QF~~~l 245 (249)
T PF05673_consen 219 LRQEALQWALRRGGRSGRTARQFIDDL 245 (249)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3 3334445778999888877653
No 151
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=4.2e-15 Score=157.99 Aligned_cols=203 Identities=18% Similarity=0.197 Sum_probs=143.6
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc------------
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS------------ 351 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~------------ 351 (611)
+.+.+|++|+|++.+++.|...+.. .+.++++|||||||+|||++|+++|+.+.+.
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 4567999999999999999998873 2456789999999999999999999998653
Q ss_pred -------------EEeecchhhccccccchHHHHHHHHHHHH----hcCCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 352 -------------FFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 352 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
++.+++.. .. +-..++.+.+.+. .....|++|||+|.+. ....
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~----~~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------------~~~~ 138 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGAS----HR--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------------KEAF 138 (451)
T ss_pred HHHHHHhcCCCCceEEeeccc----cC--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------------HHHH
Confidence 22222111 01 1123333333222 2345699999999872 3457
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.|++.|+ ++++.+++|++|+.++.+.+++.+ |+. .+.|+.++.++....++..+++.++. ++..+..++..+.
T Consensus 139 n~LLk~lE--ep~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~ 213 (451)
T PRK06305 139 NSLLKTLE--EPPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQ 213 (451)
T ss_pred HHHHHHhh--cCCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 88999998 466788888899999999999988 887 79999999999998888776655543 4456788888887
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
| +.+.+.+.+.....+. ...|+.+++..++
T Consensus 214 g-dlr~a~~~Lekl~~~~------~~~It~~~V~~l~ 243 (451)
T PRK06305 214 G-SLRDAESLYDYVVGLF------PKSLDPDSVAKAL 243 (451)
T ss_pred C-CHHHHHHHHHHHHHhc------cCCcCHHHHHHHH
Confidence 6 5566666555443321 1236666665554
No 152
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=7.6e-15 Score=161.74 Aligned_cols=194 Identities=20% Similarity=0.204 Sum_probs=135.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE-E----Ecc---c
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLT-V----ISP---H 87 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~-~----v~~---~ 87 (611)
..|++|+|++.+++.|+.++.. -+.+..+||+||+|||||++++.+|+.+++... . -.| .
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 6789999999999999988753 123456799999999999999999999976411 0 000 0
Q ss_pred c--------cc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC
Q 007255 88 S--------VH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK 157 (611)
Q Consensus 88 ~--------~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 157 (611)
. +. +.........++.+.+........++..|+||||+|.|.. ..++.|++.|+.
T Consensus 81 ~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~----------eAqNALLKtLEE----- 145 (944)
T PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR----------SSFNALLKTLEE----- 145 (944)
T ss_pred HHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH----------HHHHHHHHHHhc-----
Confidence 0 00 0000012234555555554444445667999999999843 678899999997
Q ss_pred CCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCccccHHHH
Q 007255 158 TSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEAL 236 (611)
Q Consensus 158 ~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~~~dl~~l 236 (611)
++.++.+|++|+.+..+.+.+++ |+ ..+.|.+++.++...+++..+....+..+ ..+..++..++|. .|++.++
T Consensus 146 -PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd-~R~ALnL 220 (944)
T PRK14949 146 -PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGS-MRDALSL 220 (944)
T ss_pred -cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHH
Confidence 33467788888888899999998 88 58999999999999999988765443322 2467777777664 4455555
Q ss_pred HHHHH
Q 007255 237 CREAT 241 (611)
Q Consensus 237 ~~~a~ 241 (611)
+..+.
T Consensus 221 LdQal 225 (944)
T PRK14949 221 TDQAI 225 (944)
T ss_pred HHHHH
Confidence 55444
No 153
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.64 E-value=7.9e-15 Score=152.41 Aligned_cols=190 Identities=22% Similarity=0.323 Sum_probs=134.3
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---------------
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL--------------- 81 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~--------------- 81 (611)
.|++|+|++.+++.|..++..+.. .....+.+.+..+||+||||+|||++|+.+|+.+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 468999999999999999876422 12223344667899999999999999999999876531
Q ss_pred --------EEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcC
Q 007255 82 --------TVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSN 153 (611)
Q Consensus 82 --------~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~ 153 (611)
..+.+.. .......++.+++.+...+..++..|+||||+|.|.+ ..++.|++.+++.
T Consensus 80 ~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~----------~aanaLLk~LEep 144 (394)
T PRK07940 80 LAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE----------RAANALLKAVEEP 144 (394)
T ss_pred hcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH----------HHHHHHHHHhhcC
Confidence 1111110 1122345777887776665556678999999999854 4567899998863
Q ss_pred CCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccH
Q 007255 154 KPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADL 233 (611)
Q Consensus 154 ~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl 233 (611)
+.++++|.+|+.++.+.|.++| |+ ..+.|++|+.++..+++.... ... ......++..++|..+..+
T Consensus 145 ------~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 145 ------PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred ------CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHH
Confidence 2234555556668999999999 88 489999999999888876322 222 2346678888888877665
Q ss_pred HHHH
Q 007255 234 EALC 237 (611)
Q Consensus 234 ~~l~ 237 (611)
.-+.
T Consensus 212 ~l~~ 215 (394)
T PRK07940 212 RLAT 215 (394)
T ss_pred HHhc
Confidence 4443
No 154
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=3.4e-15 Score=161.93 Aligned_cols=194 Identities=18% Similarity=0.182 Sum_probs=141.4
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEe--------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFS-------- 354 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~-------- 354 (611)
.+.+.+|++|+|++.+++.|+..+.. ...++++|||||+|+|||++|+++|+.+++.--.
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 34577899999999999999998873 2456789999999999999999999998763100
Q ss_pred ecc--------hhhccccccc---hHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHH
Q 007255 355 LSG--------AELYSMYVGE---SEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLT 419 (611)
Q Consensus 355 ~~~--------~~~~~~~~g~---~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 419 (611)
.++ .++. .+.|. .-..++.+...+.. ....|++|||+|.+ +....+.|++
T Consensus 77 ~~C~~i~~~~~~dv~-~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L--------------s~~a~naLLK 141 (563)
T PRK06647 77 SSCKSIDNDNSLDVI-EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML--------------SNSAFNALLK 141 (563)
T ss_pred hHHHHHHcCCCCCeE-EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc--------------CHHHHHHHHH
Confidence 000 0100 01111 12344454443332 23459999999987 2456789999
Q ss_pred HhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHH
Q 007255 420 EMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGA 498 (611)
Q Consensus 420 ~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~ 498 (611)
.|+ ++++.+++|++|+.++.+.+++.+ |+. .+.|.+++.++..+.++..+...++. ++..+..+++.+.| +.+
T Consensus 142 ~LE--epp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 142 TIE--EPPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred hhc--cCCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 998 577889999999999999999988 887 78999999999999998776555543 34557888888887 778
Q ss_pred HHHHHHHHHHH
Q 007255 499 ELEGLCREAGI 509 (611)
Q Consensus 499 ~i~~~~~~a~~ 509 (611)
++.+.+..+..
T Consensus 216 ~alslLdklis 226 (563)
T PRK06647 216 DAYTLFDQVVS 226 (563)
T ss_pred HHHHHHHHHHh
Confidence 88877776543
No 155
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.3e-14 Score=153.69 Aligned_cols=167 Identities=26% Similarity=0.352 Sum_probs=125.4
Q ss_pred ccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc--------
Q 007255 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK-------- 91 (611)
Q Consensus 20 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~-------- 91 (611)
+=.|++++|+++.+.+.-.... .--...-++|+||||+|||++++++|+.++..|+.++...+.+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4479999999999987542221 1223467899999999999999999999999999999875542
Q ss_pred -ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhc---------CCCCCCCCC
Q 007255 92 -AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDS---------NKPSKTSVP 161 (611)
Q Consensus 92 -~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~~ 161 (611)
.|.|.....+-+-...+... .| ++++||||.|..+..+ +. .++|+..+|- +-...-...
T Consensus 397 RTYIGamPGrIiQ~mkka~~~----NP-v~LLDEIDKm~ss~rG--DP----aSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVK----NP-VFLLDEIDKMGSSFRG--DP----ASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred ccccccCChHHHHHHHHhCCc----CC-eEEeechhhccCCCCC--Ch----HHHHHhhcCHhhcCchhhccccCccchh
Confidence 35566555555555555433 35 8889999999875432 22 3566666653 222222346
Q ss_pred cEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhh
Q 007255 162 HVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYT 207 (611)
Q Consensus 162 ~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~ 207 (611)
+|+||+|.|..+.++.+|+. |+. .|.++-++.+|..+|.+.++
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhc
Confidence 89999999999999999998 985 89999999999999999876
No 156
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=9e-15 Score=159.11 Aligned_cols=188 Identities=18% Similarity=0.255 Sum_probs=137.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~--------------- 80 (611)
+.|++|+|++.+++.|...+.. -+.+..+||+||+|+|||++++.+|+.+++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 6889999999999999888754 1234567999999999999999999999763
Q ss_pred ---------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHh
Q 007255 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (611)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 151 (611)
++.+++.+ ......++.+.+.+......++..|+||||+|.|.. ..++.|++.++
T Consensus 81 ~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~----------~a~NALLKtLE 144 (647)
T PRK07994 81 EIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR----------HSFNALLKTLE 144 (647)
T ss_pred HHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH----------HHHHHHHHHHH
Confidence 12222211 112344566665555444455677999999998854 56889999999
Q ss_pred cCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCcc
Q 007255 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVG 230 (611)
Q Consensus 152 ~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~~ 230 (611)
+ +++++.||.+|+.+..+.+.+++ |+ ..+.|.+++.++....++..+...++..+ ..+..++..++|..
T Consensus 145 E------Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~- 214 (647)
T PRK07994 145 E------PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSM- 214 (647)
T ss_pred c------CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-
Confidence 7 34467888888889999999999 87 58999999999999999988765444332 34677777777654
Q ss_pred ccHHHHHHHHH
Q 007255 231 ADLEALCREAT 241 (611)
Q Consensus 231 ~dl~~l~~~a~ 241 (611)
++..++++.+.
T Consensus 215 R~Al~lldqai 225 (647)
T PRK07994 215 RDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHH
Confidence 44445555443
No 157
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.63 E-value=3.6e-15 Score=155.97 Aligned_cols=204 Identities=19% Similarity=0.268 Sum_probs=147.6
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS----------- 351 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~----------- 351 (611)
...+.+|++++|++.+++.+.+.+.. ...++++|||||||+|||++|+++|..+.+.
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 44678899999999999999988763 2445789999999999999999999998543
Q ss_pred -------------EEeecchhhccccccchHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 352 -------------FFSLSGAELYSMYVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 352 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
++.+++.. ......++.++..+... ...|++|||+|.+. ....
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~~~ 134 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KSAF 134 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HHHH
Confidence 22222210 11233466676665432 23499999998772 3456
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.|++.++ ++++.+++|++|+.++.+.+++.+ |+. .+.|++|+.++..++++..+++.+.. ++..+..++..+.
T Consensus 135 ~~Ll~~le--~~~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~ 209 (355)
T TIGR02397 135 NALLKTLE--EPPEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAAD 209 (355)
T ss_pred HHHHHHHh--CCccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 88999997 356678888889999988889888 885 78999999999999999877665543 3355777888887
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
| +.+.+.+.+..+..+. ...++.+++..++
T Consensus 210 g-~~~~a~~~lekl~~~~------~~~it~~~v~~~~ 239 (355)
T TIGR02397 210 G-SLRDALSLLDQLISFG------NGNITYEDVNELL 239 (355)
T ss_pred C-ChHHHHHHHHHHHhhc------CCCCCHHHHHHHh
Confidence 6 6777777776665542 1236666665544
No 158
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=8.5e-15 Score=157.38 Aligned_cols=189 Identities=18% Similarity=0.211 Sum_probs=139.0
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------------
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------------- 80 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~-------------- 80 (611)
.+.|++|+|++.+++.|..++.. -+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 36789999999999999998854 1244568999999999999999999999753
Q ss_pred ----------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHH
Q 007255 81 ----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM 150 (611)
Q Consensus 81 ----------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l 150 (611)
++.+++.+ ......++.+.+.+...+..++..|++|||+|.|.. ...+.|+..+
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~----------~a~naLLk~L 143 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG----------HSFNALLKTL 143 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH----------HHHHHHHHHH
Confidence 23333221 122334566666555444455677999999998854 4578899999
Q ss_pred hcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCCc
Q 007255 151 DSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYV 229 (611)
Q Consensus 151 ~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~~ 229 (611)
+.. +.++.+|.+|+.++.+.+.+++ |+. .++|..++.++....++..+...+... +..+..++..++| +
T Consensus 144 Eep------p~~~~fIlattd~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 144 EEP------PSHVKFILATTDHHKLPVTVLS--RCL-QFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred hcc------CCCeEEEEEECChHhchHHHHH--Hhh-hhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 873 3457778888888899989998 874 789999999999998888887665442 2346777777765 4
Q ss_pred cccHHHHHHHHH
Q 007255 230 GADLEALCREAT 241 (611)
Q Consensus 230 ~~dl~~l~~~a~ 241 (611)
.+++.++++.+.
T Consensus 214 lR~al~lLdq~i 225 (509)
T PRK14958 214 VRDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHHHH
Confidence 666777776654
No 159
>PRK04195 replication factor C large subunit; Provisional
Probab=99.63 E-value=7.7e-15 Score=158.58 Aligned_cols=191 Identities=22% Similarity=0.279 Sum_probs=137.5
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
.+.+.++++++|++.+++.|..++..... | .+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 45567899999999999999998864221 2 34678999999999999999999999999999999877532
Q ss_pred ccccchHHHHHHHHHHHHh------cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEec
Q 007255 363 MYVGESEALLRNTFQRARL------AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAAT 436 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~------~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t 436 (611)
...+..+...+.. ..+.||+|||+|.+.+.. .....++|+..++. .+..+|++|
T Consensus 78 ------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~----~~~~iIli~ 137 (482)
T PRK04195 78 ------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKK----AKQPIILTA 137 (482)
T ss_pred ------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHc----CCCCEEEec
Confidence 1223333333322 246799999999985421 12345677777752 234566788
Q ss_pred CCCcccch-hccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007255 437 NRPHAIDA-ALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGI 509 (611)
Q Consensus 437 n~~~~ld~-al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~ 509 (611)
|.++.+++ .+.+ |+ ..|.|+.|+..++..+++..+...++. ++..+..+++.+.| |++.+++....
T Consensus 138 n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~ 205 (482)
T PRK04195 138 NDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQA 205 (482)
T ss_pred cCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 99988877 5554 44 489999999999999999777655543 34557888887665 67776665544
No 160
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.63 E-value=5.4e-15 Score=141.79 Aligned_cols=178 Identities=21% Similarity=0.298 Sum_probs=129.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc------EEEEccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH------LTVISPHSV 89 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~------~~~v~~~~~ 89 (611)
+.+++++|++.+++.|...+.. +.-.++|||||||||||+.++++|++++.+ +...++++.
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 8899999999999999988743 234699999999999999999999999762 233344443
Q ss_pred ccccccchHHHHHHHHHHHHhhh-----hcCCC-eEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcE
Q 007255 90 HKAHVGESEKALREAFSQASSHA-----LSGKP-SVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (611)
Q Consensus 90 ~~~~~~~~~~~l~~~f~~~~~~~-----~~~~~-~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v 163 (611)
.+... .+.-.+.|....... ..+.| -|++|||+|.|.. ..+.+|.+.|+.... ++
T Consensus 100 rGisv---vr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts----------daq~aLrr~mE~~s~------~t 160 (346)
T KOG0989|consen 100 RGISV---VREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS----------DAQAALRRTMEDFSR------TT 160 (346)
T ss_pred ccccc---hhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH----------HHHHHHHHHHhcccc------ce
Confidence 22211 111112233322211 11122 6999999999865 678999999998443 46
Q ss_pred EEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCccc-HHHHHHhccCC
Q 007255 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGY 228 (611)
Q Consensus 164 ~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-~~~la~~~~g~ 228 (611)
.||..||..+.+.+.+.+ |+. .+.|+....+.....++..+.+..++.+.+ ++.++..++|-
T Consensus 161 rFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 161 RFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred EEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 888889999999999998 986 789999999999999998887776664433 77777766653
No 161
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.8e-14 Score=150.03 Aligned_cols=194 Identities=20% Similarity=0.267 Sum_probs=132.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE--------ccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI--------SPH 87 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v--------~~~ 87 (611)
..|++|+|++.+++.|...+.. -+.+..+||+||+|+|||++|+.+|+.+++..... +|.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 6789999999999999888743 12456789999999999999999999986421000 000
Q ss_pred --------cccc--ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC
Q 007255 88 --------SVHK--AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK 157 (611)
Q Consensus 88 --------~~~~--~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 157 (611)
++.. .........++.+.+.....+..++..|++|||+|.+.. ..++.|+..++..
T Consensus 81 ~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~----------~a~naLLk~lEe~---- 146 (363)
T PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR----------HSFNALLKTLEEP---- 146 (363)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH----------HHHHHHHHHHhcC----
Confidence 1110 000122344555555544333344567999999998843 4467788888863
Q ss_pred CCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHH
Q 007255 158 TSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEAL 236 (611)
Q Consensus 158 ~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l 236 (611)
+.++.+|.+|+.++.+.+.+++ |+ ..+.|++|+.++..+++...++..+.. .+..+..++..+.| +.+++.++
T Consensus 147 --~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~ 220 (363)
T PRK14961 147 --PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNL 220 (363)
T ss_pred --CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 2356677777888889999988 87 489999999999999999887765543 22346777777765 34555555
Q ss_pred HHHHH
Q 007255 237 CREAT 241 (611)
Q Consensus 237 ~~~a~ 241 (611)
++.+.
T Consensus 221 l~~~~ 225 (363)
T PRK14961 221 LEHAI 225 (363)
T ss_pred HHHHH
Confidence 55543
No 162
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=8.9e-15 Score=160.47 Aligned_cols=192 Identities=17% Similarity=0.214 Sum_probs=138.5
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEee----cc-
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL----SG- 357 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~----~~- 357 (611)
.+.+.+|++++|++.+++.|...+.. .+.++++||+||+|+|||++|+++|+.+++....- .+
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 44567899999999999999998874 13456899999999999999999999997732100 00
Q ss_pred -------------hhhc--cccccchHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHH
Q 007255 358 -------------AELY--SMYVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (611)
Q Consensus 358 -------------~~~~--~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll 418 (611)
.++. ....+.....++.+.+.+... ...|++|||+|.+ .....+.||
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L--------------t~~a~naLL 142 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML--------------STAAFNALL 142 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc--------------CHHHHHHHH
Confidence 0110 111122345677777666532 2359999999987 245679999
Q ss_pred HHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCH
Q 007255 419 TEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTG 497 (611)
Q Consensus 419 ~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~ 497 (611)
+.|+ ++.+.++||++|+.++.+-+.+++ |+. .+.|+.++.++....+.....+.... .+..+..+++.+.| +.
T Consensus 143 K~LE--ePp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~l 216 (620)
T PRK14948 143 KTLE--EPPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GL 216 (620)
T ss_pred HHHh--cCCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CH
Confidence 9999 577888999999999999889887 886 78898888888877777655544333 33457888888877 45
Q ss_pred HHHHHHHHH
Q 007255 498 AELEGLCRE 506 (611)
Q Consensus 498 ~~i~~~~~~ 506 (611)
+++.+.++.
T Consensus 217 r~A~~lLek 225 (620)
T PRK14948 217 RDAESLLDQ 225 (620)
T ss_pred HHHHHHHHH
Confidence 666666554
No 163
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=2.4e-14 Score=152.09 Aligned_cols=191 Identities=17% Similarity=0.238 Sum_probs=130.6
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh-----CCcEEeecchhhccccccchH-HHHHHHHHHHHhcCCcEEEEcccccccc
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSMYVGESE-ALLRNTFQRARLAAPSIIFFDEADVVGA 397 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~a~~~~p~il~iDeid~l~~ 397 (611)
.++++||||||+|||+|++++|+++ +..++++++.++...+..... ..+.. |.......+++|+|||++.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC
Confidence 3569999999999999999999986 467888888887655432211 11222 2222223678999999998854
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcc---cchhccCCCCcc--ceeecCCCCHHHHHHHHHH
Q 007255 398 KRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHA---IDAALMRPGRFD--LVLYVPPPDLEARHEILRV 472 (611)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~il~~ 472 (611)
+. .....|+..++.+...++.++|+++..|.. +++.+.+ ||. ..+.+++||.+.|..|++.
T Consensus 209 ~~------------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 209 KT------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred cH------------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHH
Confidence 31 112233333333334455666666677775 4556766 774 6888999999999999997
Q ss_pred HhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Q 007255 473 HTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSL 533 (611)
Q Consensus 473 ~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~ 533 (611)
.+...++. ++..++.+|....| +.++++.++......+... .++++......++..+
T Consensus 275 ~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~---~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 275 MLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT---GEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHH
Confidence 76543333 33447889988877 7889999988776655443 4678888888888754
No 164
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.62 E-value=1.4e-14 Score=151.15 Aligned_cols=222 Identities=25% Similarity=0.258 Sum_probs=143.0
Q ss_pred ccchhHHHHHHHHHhhccCCChhHHhh---cCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc-ccccc
Q 007255 292 IGGLRDLKKKLQQAVEWPIKHSTAFSR---LGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MYVGE 367 (611)
Q Consensus 292 i~g~~~~k~~l~~~~~~~~~~~~~~~~---~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~-~~~g~ 367 (611)
|+|++.+++.+..++..+.+......+ -.-.+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 899999999997766432222110000 00123568999999999999999999999999999999988764 68887
Q ss_pred hHH-HHHHHHHH----HHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC----C-------CCCeE
Q 007255 368 SEA-LLRNTFQR----ARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE----Q-------AKGIL 431 (611)
Q Consensus 368 ~~~-~~~~~~~~----a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----~-------~~~~~ 431 (611)
... .+..++.. .....++||||||||.+..+....+...+.....+++.||+.||+.. + ...++
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 543 34444432 22346789999999999876433222222223468899999998631 1 11244
Q ss_pred EEEecCCCc--------------------------c--------------------------cchhccCCCCccceeecC
Q 007255 432 VLAATNRPH--------------------------A--------------------------IDAALMRPGRFDLVLYVP 459 (611)
Q Consensus 432 vI~~tn~~~--------------------------~--------------------------ld~al~r~gRf~~~i~~~ 459 (611)
+|.|+|-.. . +.|.|+ ||++.++.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecC
Confidence 555544300 0 123333 5999999999
Q ss_pred CCCHHHHHHHHHH----HhcC---------CCCC-CcccHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHhh
Q 007255 460 PPDLEARHEILRV----HTRN---------MKVG-DDVDLRSIAEE--TELFTGAELEGLCREAGIVALRED 515 (611)
Q Consensus 460 ~p~~~~r~~il~~----~~~~---------~~~~-~~~~~~~la~~--~~g~s~~~i~~~~~~a~~~a~~~~ 515 (611)
+.+.++..+|+.. .+++ +.+. ++..++.+++. ..++-.+.++.+++......+.+.
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 9999999999972 2221 1111 23336677765 345666788888777666665443
No 165
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=6.7e-15 Score=160.32 Aligned_cols=196 Identities=18% Similarity=0.175 Sum_probs=144.4
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeec-c---
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS-G--- 357 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~-~--- 357 (611)
..+.+.+|++++|++.+++.|...+.. .+.++++||+||+|+|||++|+++|+.++|.....+ .
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 345567899999999999999998873 255688999999999999999999999976532221 0
Q ss_pred -----------------hhhcccc--ccchHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 358 -----------------AELYSMY--VGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 358 -----------------~~~~~~~--~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
.++.... ....-..++.+.+.+... ...|++|||+|.+. ....
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~a~ 149 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TAAF 149 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HHHH
Confidence 0111000 001133566666665432 24599999999882 3567
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~ 493 (611)
+.|++.|+ ++.+.+.||++|+.++.+.+.+++ |+. .+.|..|+.++....++..+++..+. ++..+..++..+.
T Consensus 150 naLLKtLE--ePp~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~ 224 (598)
T PRK09111 150 NALLKTLE--EPPPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAE 224 (598)
T ss_pred HHHHHHHH--hCCCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 99999998 577788888899988888888887 886 89999999999999998777665544 3355778888887
Q ss_pred CCCHHHHHHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGI 509 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~ 509 (611)
| +.+++.+.+..+..
T Consensus 225 G-dlr~al~~Ldkli~ 239 (598)
T PRK09111 225 G-SVRDGLSLLDQAIA 239 (598)
T ss_pred C-CHHHHHHHHHHHHh
Confidence 7 77788777766543
No 166
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.9e-14 Score=152.32 Aligned_cols=190 Identities=23% Similarity=0.296 Sum_probs=142.1
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------------
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------------- 80 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~-------------- 80 (611)
.+.|++++|++.+++.|..++.. -+.+.++||+||+|+|||++|+.+|+.+++.
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 37889999999999999887643 1346789999999999999999999987532
Q ss_pred ----------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHH
Q 007255 81 ----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM 150 (611)
Q Consensus 81 ----------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l 150 (611)
++.+++++ ......++.+.+.+...+..++..|++|||+|.|.. ..++.|+..+
T Consensus 77 ~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~----------~A~NaLLK~L 140 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN----------SAFNALLKTL 140 (491)
T ss_pred HHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH----------HHHHHHHHHH
Confidence 23333321 122345677777766665566778999999998843 4578899999
Q ss_pred hcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCc
Q 007255 151 DSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYV 229 (611)
Q Consensus 151 ~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~ 229 (611)
++ +++++.+|.+|+.++.+.+.+++ |+. .+.|..++.++....++..+...+..-+ ..+..++..++| +
T Consensus 141 Ee------Pp~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 141 EE------PAPHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred hC------CCCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 87 33457788888888899999998 884 7999999999999999988876655432 347777887765 5
Q ss_pred cccHHHHHHHHHH
Q 007255 230 GADLEALCREATM 242 (611)
Q Consensus 230 ~~dl~~l~~~a~~ 242 (611)
.+++.++++.+..
T Consensus 211 lR~alslLdqli~ 223 (491)
T PRK14964 211 MRNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666543
No 167
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=2.5e-14 Score=152.70 Aligned_cols=196 Identities=23% Similarity=0.309 Sum_probs=142.1
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE-----------
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV----------- 83 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~----------- 83 (611)
.+.|++++|++.+++.|..++.. -+.+.++||+||+|||||++|+.+|+.+++....
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 37889999999999999887643 1345789999999999999999999999763210
Q ss_pred -Eccccc--------cc--ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhc
Q 007255 84 -ISPHSV--------HK--AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDS 152 (611)
Q Consensus 84 -v~~~~~--------~~--~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~ 152 (611)
-+|..+ .. .........++.+.+.+...+..++..|++|||+|.+.. ..++.|+..++.
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~----------~a~naLLk~LEe 154 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK----------GAFNALLKTLEE 154 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH----------HHHHHHHHHHhh
Confidence 001011 00 001123456777777776666566778999999998843 456778888885
Q ss_pred CCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCccc
Q 007255 153 NKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGA 231 (611)
Q Consensus 153 ~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~~~ 231 (611)
+++++++|.+|+.++.+.+.+++ |+ ..+.|..++.++...+++..++..+...+ ..+..++..++| +.+
T Consensus 155 ------pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR 224 (507)
T PRK06645 155 ------PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SAR 224 (507)
T ss_pred ------cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 23457777778888899999998 88 48999999999999999998876655433 347778887776 556
Q ss_pred cHHHHHHHHHH
Q 007255 232 DLEALCREATM 242 (611)
Q Consensus 232 dl~~l~~~a~~ 242 (611)
++.++++.+..
T Consensus 225 ~al~~Ldkai~ 235 (507)
T PRK06645 225 DAVSILDQAAS 235 (507)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 168
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.6e-15 Score=156.03 Aligned_cols=169 Identities=26% Similarity=0.409 Sum_probs=126.4
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc-------
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK------- 91 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~------- 91 (611)
+|=.|++++|+++.+++.-- .-.|-...+-++|+||||+|||+++++||+.+|..|+.++...+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~-------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVG-------KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHH-------hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 35579999999999987432 2223445678999999999999999999999999999998765432
Q ss_pred --ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHh---------cCCCCCCCC
Q 007255 92 --AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD---------SNKPSKTSV 160 (611)
Q Consensus 92 --~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~---------~~~~~~~~~ 160 (611)
.|.|.....+-+.++.... +.| +++|||+|.+... ..++. .++|+.++| ++-......
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t----~NP-liLiDEvDKlG~g--~qGDP----asALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKT----ENP-LILIDEVDKLGSG--HQGDP----ASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred ceeeeccCChHHHHHHHhhCC----CCc-eEEeehhhhhCCC--CCCCh----HHHHHHhcChhhccchhhhccccccch
Confidence 3556555666565555543 345 8889999999832 22222 345555554 333333345
Q ss_pred CcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhc
Q 007255 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTK 208 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~ 208 (611)
.+|+||||.|..+.++++|+. |+. .|+++-|..++...|.+.++-
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 689999999999999999998 985 899999999999999998763
No 169
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=8.1e-15 Score=154.31 Aligned_cols=195 Identities=16% Similarity=0.171 Sum_probs=137.5
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEee-------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL------- 355 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~------- 355 (611)
.+.+.+|++|+|++.+++.|+..+.. .+.++++||+||||+|||++|+++|+.+.+.-..-
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRM------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHh------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 34567899999999999999988873 25667899999999999999999999997741000
Q ss_pred ---cc--------------hhhccccccc---hHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhH
Q 007255 356 ---SG--------------AELYSMYVGE---SEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGE 411 (611)
Q Consensus 356 ---~~--------------~~~~~~~~g~---~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 411 (611)
.+ .++. .+.+. ....++.+.+.+.. ....|++|||+|.+. .
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~-~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------------~ 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------------I 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeE-eecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------------H
Confidence 00 0100 01111 12345555444421 123499999999872 3
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCC-CCcccHHHHHH
Q 007255 412 RLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKV-GDDVDLRSIAE 490 (611)
Q Consensus 412 ~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~ 490 (611)
...+.|++.++ ++++.+++|++|+.+..+-+++.+ |+. .+.|+.++.++..+.++..++.... .++..++.++.
T Consensus 142 ~~~~~LLk~LE--ep~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~ 216 (397)
T PRK14955 142 AAFNAFLKTLE--EPPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGR 216 (397)
T ss_pred HHHHHHHHHHh--cCCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 35678899988 466677788888888888888887 776 8899999999988888876655544 34456788888
Q ss_pred hCCCCCHHHHHHHHHHHHHH
Q 007255 491 ETELFTGAELEGLCREAGIV 510 (611)
Q Consensus 491 ~~~g~s~~~i~~~~~~a~~~ 510 (611)
.+.| +.+.+.+.+..+..+
T Consensus 217 ~s~g-~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 217 KAQG-SMRDAQSILDQVIAF 235 (397)
T ss_pred HcCC-CHHHHHHHHHHHHHh
Confidence 8877 667777776665444
No 170
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.62 E-value=1.4e-14 Score=157.43 Aligned_cols=219 Identities=25% Similarity=0.328 Sum_probs=143.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~ 85 (611)
..|++++|++..++.+...+.. ..+.++||+||||||||++|+++++.+ +.+|+.++
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id 128 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEID 128 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEc
Confidence 6788999999999998865422 245799999999999999999998753 35788888
Q ss_pred ccccccccccchHHHHHH----------HHHHH------HhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHH
Q 007255 86 PHSVHKAHVGESEKALRE----------AFSQA------SSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (611)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~----------~f~~~------~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~ 149 (611)
+........+.....+.. .|... ........+++|||||+|.|.+ ..++.|+..
T Consensus 129 ~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~----------~~q~~LL~~ 198 (531)
T TIGR02902 129 ATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP----------VQMNKLLKV 198 (531)
T ss_pred cccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH----------HHHHHHHHH
Confidence 764211000000000000 00000 0000123467999999999865 567888888
Q ss_pred HhcCCCC----------------------CCCCCcEE-EEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHh
Q 007255 150 MDSNKPS----------------------KTSVPHVV-VVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLY 206 (611)
Q Consensus 150 l~~~~~~----------------------~~~~~~v~-ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~ 206 (611)
++..... ...+.++. +++|++.++.++|++++ |+. .+.|++++.+++.+|++..
T Consensus 199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~ 275 (531)
T TIGR02902 199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNA 275 (531)
T ss_pred HHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHH
Confidence 8653210 00112344 45556779999999998 885 7899999999999999998
Q ss_pred hcCCCCCCc-ccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHh
Q 007255 207 TKKVPLDAN-VDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARS 270 (611)
Q Consensus 207 ~~~~~~~~~-~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~ 270 (611)
+++....-+ ..++.++..+ .+++++.++++.|+..+..+. ...++.+|+.....
T Consensus 276 a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~--------~~~It~~dI~~vl~ 330 (531)
T TIGR02902 276 AEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEG--------RKRILAEDIEWVAE 330 (531)
T ss_pred HHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCC--------CcEEcHHHHHHHhC
Confidence 877654422 2355555443 378999999999887665432 13477888877754
No 171
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.8e-14 Score=157.17 Aligned_cols=196 Identities=16% Similarity=0.194 Sum_probs=139.3
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEee-------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL------- 355 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~------- 355 (611)
.+.+.+|++|+|++.+++.|+..+.. .+.++++||+||+|||||++|+++|+.++|.-..-
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 34577899999999999999998763 35667899999999999999999999998742100
Q ss_pred ---cc--------------hhhccccccc---hHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhH
Q 007255 356 ---SG--------------AELYSMYVGE---SEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGE 411 (611)
Q Consensus 356 ---~~--------------~~~~~~~~g~---~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 411 (611)
.+ .++. .+.|. ....++.+.+.+.. ....|++|||+|.+. .
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~-~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------------~ 141 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------------T 141 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeE-EecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------------H
Confidence 00 0000 01111 12345555444421 223499999999872 3
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCC-CCcccHHHHHH
Q 007255 412 RLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKV-GDDVDLRSIAE 490 (611)
Q Consensus 412 ~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~ 490 (611)
...+.|++.|+ ++++.+++|++|+.++.+-+.+.+ |+. .+.|..++.++....++..++..++ .++..++.++.
T Consensus 142 ~a~naLLK~LE--ePp~~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~ 216 (620)
T PRK14954 142 AAFNAFLKTLE--EPPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIAR 216 (620)
T ss_pred HHHHHHHHHHh--CCCCCeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45789999998 566778888888888888888887 776 8999999999988888876665444 24556788888
Q ss_pred hCCCCCHHHHHHHHHHHHHHH
Q 007255 491 ETELFTGAELEGLCREAGIVA 511 (611)
Q Consensus 491 ~~~g~s~~~i~~~~~~a~~~a 511 (611)
.+.| +.+++.+.+.....+.
T Consensus 217 ~s~G-dlr~al~eLeKL~~y~ 236 (620)
T PRK14954 217 KAQG-SMRDAQSILDQVIAFS 236 (620)
T ss_pred HhCC-CHHHHHHHHHHHHHhc
Confidence 8877 6666666666554443
No 172
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.61 E-value=2.8e-14 Score=158.48 Aligned_cols=227 Identities=20% Similarity=0.239 Sum_probs=147.7
Q ss_pred cCCCcccccccchhHHHH---HHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchh
Q 007255 283 EIPKVTWEDIGGLRDLKK---KLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAE 359 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~---~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~ 359 (611)
...+.++++++|++.+.. .+.+.+.. ....+++||||||||||++|+++|+..+.+++.+++..
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~ 87 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh
Confidence 344678999999998874 56666542 22347999999999999999999999999998888653
Q ss_pred hccccccchHHHHHHHHHHHH-----hcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEE
Q 007255 360 LYSMYVGESEALLRNTFQRAR-----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLA 434 (611)
Q Consensus 360 ~~~~~~g~~~~~~~~~~~~a~-----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~ 434 (611)
. + ...++..+..+. .....+|||||+|.+- ....+.|+..++ .+.+++|+
T Consensus 88 ~-----~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln--------------~~qQdaLL~~lE----~g~IiLI~ 142 (725)
T PRK13341 88 A-----G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN--------------KAQQDALLPWVE----NGTITLIG 142 (725)
T ss_pred h-----h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC--------------HHHHHHHHHHhc----CceEEEEE
Confidence 1 1 112333333331 1245699999999872 233466777664 35677777
Q ss_pred ecCC--CcccchhccCCCCccceeecCCCCHHHHHHHHHHHhc-------CCCCC-CcccHHHHHHhCCCCCHHHHHHHH
Q 007255 435 ATNR--PHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTR-------NMKVG-DDVDLRSIAEETELFTGAELEGLC 504 (611)
Q Consensus 435 ~tn~--~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~-------~~~~~-~~~~~~~la~~~~g~s~~~i~~~~ 504 (611)
+|+. ...+++++++ |+. .+.|++++.+++..+++..+. ...+. ++..+..|++.+.| +.+++.+++
T Consensus 143 aTTenp~~~l~~aL~S--R~~-v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~L 218 (725)
T PRK13341 143 ATTENPYFEVNKALVS--RSR-LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNAL 218 (725)
T ss_pred ecCCChHhhhhhHhhc--ccc-ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHH
Confidence 6643 2468899998 764 789999999999999997765 22222 34457888888876 667777777
Q ss_pred HHHHHHHHHhhcccccccHHHHHHHHhhcCC------CCCHHHHHHHHHHhhc
Q 007255 505 REAGIVALREDISATAVRNRHFQTVKDSLKP------ALTKEEIDSYSSFMKS 551 (611)
Q Consensus 505 ~~a~~~a~~~~~~~~~i~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~ 551 (611)
+.+...+.........++.++...++..... ....+.|..|.+.++.
T Consensus 219 e~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirg 271 (725)
T PRK13341 219 ELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRG 271 (725)
T ss_pred HHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhc
Confidence 7665322211111223676777776654211 2334455555555544
No 173
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.61 E-value=3.1e-14 Score=146.27 Aligned_cols=160 Identities=20% Similarity=0.192 Sum_probs=115.1
Q ss_pred cccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhh
Q 007255 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (611)
Q Consensus 281 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~ 360 (611)
...+.+.++++++|++.+++.+..++.. + ..++.+||+||||+|||++|++++++.+.+++.+++++
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~- 78 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD- 78 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-
Confidence 3445667899999999999999988762 2 34556777999999999999999999999999998876
Q ss_pred ccccccchHHHHHHHHHHHH-hcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 007255 361 YSMYVGESEALLRNTFQRAR-LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRP 439 (611)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 439 (611)
.. .......+........ ...+.|++|||+|.+.. ......|...++. ...++.+|++||.+
T Consensus 79 -~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------------~~~~~~L~~~le~--~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 79 -CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------------ADAQRHLRSFMEA--YSKNCSFIITANNK 141 (316)
T ss_pred -cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------------HHHHHHHHHHHHh--cCCCceEEEEcCCh
Confidence 22 2211122222211111 12467999999997721 1233445555663 44567888899999
Q ss_pred cccchhccCCCCccceeecCCCCHHHHHHHHHHH
Q 007255 440 HAIDAALMRPGRFDLVLYVPPPDLEARHEILRVH 473 (611)
Q Consensus 440 ~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~ 473 (611)
+.+++++.+ ||. .+.|+.|+.+++..+++..
T Consensus 142 ~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 142 NGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred hhchHHHHh--hce-EEEeCCCCHHHHHHHHHHH
Confidence 999999998 996 7899999999998887643
No 174
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.60 E-value=6.5e-14 Score=146.25 Aligned_cols=232 Identities=19% Similarity=0.241 Sum_probs=147.9
Q ss_pred cccc-ccCCcHHHHHHHHHHHHhhhhCchHHHhc--CC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc
Q 007255 16 KAEE-AIGGNRAAVEALRELITFPLLYSSQAQKL--GL-KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK 91 (611)
Q Consensus 16 ~~~~-~i~G~~~~~~~l~~~l~~~~~~~~~~~~~--g~-~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~ 91 (611)
..++ .|+|++.+++.|..++..++......... .. .+..++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~ 146 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTE 146 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 4454 48999999999988876544332211000 11 13479999999999999999999999999999999987653
Q ss_pred -ccccchH-HHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCC----chhhHHHHHHHHHHHhcCC-------CCCC
Q 007255 92 -AHVGESE-KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR----REQDVRIASQLFTLMDSNK-------PSKT 158 (611)
Q Consensus 92 -~~~~~~~-~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~----~~~~~~~~~~ll~~l~~~~-------~~~~ 158 (611)
.+.|... ..+..++..+........++||||||+|.+.+..++. ......+++.|+.+|++.. ....
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 4555533 3334444332222223458899999999998763221 1122368899999998531 1111
Q ss_pred CCCcEEEEEeecCcc----------------------------------------------------cccHHhhccCCcc
Q 007255 159 SVPHVVVVASTNRVD----------------------------------------------------AIDPALRRSGRFD 186 (611)
Q Consensus 159 ~~~~v~ii~ttn~~~----------------------------------------------------~l~~~l~~~~Rf~ 186 (611)
...++++|.|+|... .+.|++.. |++
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCC
Confidence 222345555554400 13466654 999
Q ss_pred eEEEccCCCHHHHHHHHHH----hhcC-------CCCC---CcccHHHHHHh--ccCCccccHHHHHHHHHHHHhhhcc
Q 007255 187 AEVEVTVPTAEERFEILKL----YTKK-------VPLD---ANVDLEAIATS--CNGYVGADLEALCREATMSAVKRSS 249 (611)
Q Consensus 187 ~~i~~~~p~~~~r~~Il~~----~~~~-------~~~~---~~~~~~~la~~--~~g~~~~dl~~l~~~a~~~a~~r~~ 249 (611)
..+.|.+.+.+++.+|+.. .+++ .... .+.-++.+++. ..++-+|.|+.+++..+...+....
T Consensus 305 ~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p 383 (412)
T PRK05342 305 VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELP 383 (412)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcc
Confidence 9999999999999999972 2221 1121 11226667765 3455678888888887776665443
No 175
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.60 E-value=1.6e-14 Score=140.86 Aligned_cols=227 Identities=21% Similarity=0.245 Sum_probs=146.3
Q ss_pred CCCcccccccchhHHHHH---HHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc---EEeecc
Q 007255 284 IPKVTWEDIGGLRDLKKK---LQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS---FFSLSG 357 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~---l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~---~~~~~~ 357 (611)
..+.+++|.+|++++..+ |+.+++. ..-.+++|+||||||||+||+.++.....+ |+++++
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 345678888888876543 3444442 223479999999999999999999988665 777776
Q ss_pred hhhccccccchHHHHHHHHHHHHhc-----CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEE
Q 007255 358 AELYSMYVGESEALLRNTFQRARLA-----APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILV 432 (611)
Q Consensus 358 ~~~~~~~~g~~~~~~~~~~~~a~~~-----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 432 (611)
.+- ....++.+|+.++.. ...||||||||.+- +.-+..||-.. ..+.+++
T Consensus 199 t~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN--------------ksQQD~fLP~V----E~G~I~l 253 (554)
T KOG2028|consen 199 TNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN--------------KSQQDTFLPHV----ENGDITL 253 (554)
T ss_pred ccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh--------------hhhhhccccee----ccCceEE
Confidence 432 345588888887653 35699999999872 11123344443 4577889
Q ss_pred EEecC--CCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhc---CC-----CCCC------cccHHHHHHhCCCCC
Q 007255 433 LAATN--RPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTR---NM-----KVGD------DVDLRSIAEETELFT 496 (611)
Q Consensus 433 I~~tn--~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~---~~-----~~~~------~~~~~~la~~~~g~s 496 (611)
||+|+ ....+..+|++ |+. ++.+.....+....||..... +- ++.+ +--++.++..++|-+
T Consensus 254 IGATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 254 IGATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred EecccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 98874 34478999998 876 677777888888888875322 11 1111 223788999998843
Q ss_pred HHHHHHHHHHHHHHHHHh--hcccccccHHHHHHHHhhcCCCCC---HHHHHHHHHHhhcC
Q 007255 497 GAELEGLCREAGIVALRE--DISATAVRNRHFQTVKDSLKPALT---KEEIDSYSSFMKSQ 552 (611)
Q Consensus 497 ~~~i~~~~~~a~~~a~~~--~~~~~~i~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~ 552 (611)
.+ .-+++..++.....+ +.+..+++.+|+.+.+..-.-.++ ++.......|.+..
T Consensus 331 R~-aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSm 390 (554)
T KOG2028|consen 331 RA-ALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSM 390 (554)
T ss_pred HH-HHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhh
Confidence 33 333344443333322 235568999999999976543332 33444455555443
No 176
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.60 E-value=3.1e-14 Score=147.86 Aligned_cols=211 Identities=20% Similarity=0.236 Sum_probs=139.9
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhC-----CcEEeec
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE-----ASFFSLS 356 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~-----~~~~~~~ 356 (611)
..+.+.+|++++|++.+++.|..++.. + . ..+++|+||||||||++|+++|+++. .+++.++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~-----------~-~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~ 73 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDS-----------P-N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN 73 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhC-----------C-C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec
Confidence 344567899999999999999988763 1 1 22699999999999999999999984 3467788
Q ss_pred chhhccccc-------------cc-------hHHHHHHHHHHHHh-----cCCcEEEEcccccccccCCCCCCCCcchhH
Q 007255 357 GAELYSMYV-------------GE-------SEALLRNTFQRARL-----AAPSIIFFDEADVVGAKRGGSSSTSITVGE 411 (611)
Q Consensus 357 ~~~~~~~~~-------------g~-------~~~~~~~~~~~a~~-----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 411 (611)
+.++..... +. ....++.+.+.... ..+.+|+|||+|.+. .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~--------------~ 139 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR--------------E 139 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC--------------H
Confidence 776542210 10 11233333333322 224599999999772 2
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHH
Q 007255 412 RLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAE 490 (611)
Q Consensus 412 ~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~ 490 (611)
...+.|...++.. .+...+|++|+.+..+.+++.+ |+. .+.+++|+.++...+++..+++.++. ++..++.++.
T Consensus 140 ~~~~~L~~~le~~--~~~~~~Il~~~~~~~~~~~L~s--r~~-~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~ 214 (337)
T PRK12402 140 DAQQALRRIMEQY--SRTCRFIIATRQPSKLIPPIRS--RCL-PLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAY 214 (337)
T ss_pred HHHHHHHHHHHhc--cCCCeEEEEeCChhhCchhhcC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3345666677642 3345566677777777778877 764 78999999999999999777655543 4456788888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Q 007255 491 ETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDS 532 (611)
Q Consensus 491 ~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~ 532 (611)
.+.| +++.++......+. ....|+.+++..++..
T Consensus 215 ~~~g----dlr~l~~~l~~~~~----~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 215 YAGG----DLRKAILTLQTAAL----AAGEITMEAAYEALGD 248 (337)
T ss_pred HcCC----CHHHHHHHHHHHHH----cCCCCCHHHHHHHhCC
Confidence 7754 44444444433331 1235888877776643
No 177
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=3e-14 Score=154.23 Aligned_cols=196 Identities=19% Similarity=0.205 Sum_probs=139.1
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE-------E-cc
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV-------I-SP 86 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~-------v-~~ 86 (611)
.+.|++|+|++.+++.|..++.. -+.+..+||+||+|||||++++.+|+.+++.-.. + +|
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 36789999999999999998754 1345689999999999999999999998653110 0 00
Q ss_pred -----c---ccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC
Q 007255 87 -----H---SVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS 156 (611)
Q Consensus 87 -----~---~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 156 (611)
. ++. +.........++.+++.+......++..|+||||+|.|.. ...+.|++.|+..
T Consensus 80 r~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~----------~A~NALLKtLEEP--- 146 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK----------SAFNAMLKTLEEP--- 146 (709)
T ss_pred HHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH----------HHHHHHHHHHHhC---
Confidence 0 010 0001122345667766655444445678999999998743 4567889999862
Q ss_pred CCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCccccHHH
Q 007255 157 KTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEA 235 (611)
Q Consensus 157 ~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~~~dl~~ 235 (611)
++++.+|.+|+.+..+.+.+++ ||. .+.|..++.++...+++..+...++..+ ..+..++..+.| +.+++.+
T Consensus 147 ---p~~v~fILaTtd~~kL~~TIrS--RC~-~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAln 219 (709)
T PRK08691 147 ---PEHVKFILATTDPHKVPVTVLS--RCL-QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALS 219 (709)
T ss_pred ---CCCcEEEEEeCCccccchHHHH--HHh-hhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHH
Confidence 2356778888888899999987 884 7899999999999999998887665433 247777777754 4566666
Q ss_pred HHHHHHH
Q 007255 236 LCREATM 242 (611)
Q Consensus 236 l~~~a~~ 242 (611)
+++.+..
T Consensus 220 LLDqaia 226 (709)
T PRK08691 220 LLDQAIA 226 (709)
T ss_pred HHHHHHH
Confidence 6666553
No 178
>PLN03025 replication factor C subunit; Provisional
Probab=99.59 E-value=2.5e-14 Score=146.67 Aligned_cols=176 Identities=21% Similarity=0.238 Sum_probs=122.8
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEEcccc
Q 007255 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-----HLTVISPHS 88 (611)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~-----~~~~v~~~~ 88 (611)
..+.+++++|++++++.|+.++.. ....++||+||||||||++++++|+++.. .++.+++++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 347889999999999999887543 12247999999999999999999999833 355556554
Q ss_pred cccccccchHHHHHHHHHHHHhh---hhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 007255 89 VHKAHVGESEKALREAFSQASSH---ALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVV 165 (611)
Q Consensus 89 ~~~~~~~~~~~~l~~~f~~~~~~---~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~i 165 (611)
... ...++...+..... ...++..|++|||+|.|.. ..++.|+..++.... .+.+
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~----------~aq~aL~~~lE~~~~------~t~~ 132 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS----------GAQQALRRTMEIYSN------TTRF 132 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH----------HHHHHHHHHHhcccC------CceE
Confidence 321 11223222221111 1113467999999999854 446778888875322 2457
Q ss_pred EEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccC
Q 007255 166 VASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNG 227 (611)
Q Consensus 166 i~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g 227 (611)
|.+||....+.+++++ |+. .+.|++|+.++....++..++..+.. .+..+..++..+.|
T Consensus 133 il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 133 ALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred EEEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7788888899999998 874 79999999999999999888765543 23347777776654
No 179
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.5e-14 Score=149.99 Aligned_cols=196 Identities=17% Similarity=0.239 Sum_probs=139.5
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhh--
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL-- 360 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~-- 360 (611)
.+.+.+|++++|++.+.+.+...+.. | ..++++|||||||+|||++|+++|+.++++.......++
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 34577899999999999999998873 2 445789999999999999999999998653211110000
Q ss_pred ----ccccccchHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEE
Q 007255 361 ----YSMYVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILV 432 (611)
Q Consensus 361 ----~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 432 (611)
...........++.+++.+... .+.|++|||+|.+. ....+.|++.++. ++...++
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~--------------~~~~~~ll~~le~--~~~~~~~ 141 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS--------------SAAFNAFLKTLEE--PPAHAIF 141 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC--------------HHHHHHHHHHHhC--CCCceEE
Confidence 0001111234566666665432 34599999999772 2346788888873 5556777
Q ss_pred EEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007255 433 LAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIV 510 (611)
Q Consensus 433 I~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~ 510 (611)
|++|+.+..+.+++.+ |+. .+.|+.|+.++...++...+.+.++. ++..+..++..+.| +.+.+.+.++....+
T Consensus 142 Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y 216 (367)
T PRK14970 142 ILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTF 216 (367)
T ss_pred EEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 7788888899999887 776 78999999999999988766665543 45667888888776 667777777665543
No 180
>PRK06893 DNA replication initiation factor; Validated
Probab=99.59 E-value=5.2e-14 Score=136.99 Aligned_cols=180 Identities=11% Similarity=0.099 Sum_probs=114.3
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCC
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGG 401 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~ 401 (611)
..++||||||||||+|++|+|+++ +.....++..+.. .....+++.. .+.++|+|||++.+.++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~--~~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL--EQQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc--ccCCEEEEeChhhhcCCh--
Confidence 357999999999999999999986 3344444443211 1111223222 245799999999885331
Q ss_pred CCCCCcchhHHHHHHHHHHhcCCCCCCC-eEEEEecCCCcccc---hhccCCCCccceeecCCCCHHHHHHHHHHHhcCC
Q 007255 402 SSSTSITVGERLLSTLLTEMDGLEQAKG-ILVLAATNRPHAID---AALMRPGRFDLVLYVPPPDLEARHEILRVHTRNM 477 (611)
Q Consensus 402 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~~vI~~tn~~~~ld---~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~ 477 (611)
... ..|+..++.....++ +++++++..|..++ +.+.+..++...+.++.|+.++|.+|++..+...
T Consensus 108 -------~~~---~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 108 -------EWE---LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred -------HHH---HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 112 233333333233344 44555666677654 7888734455788999999999999999766544
Q ss_pred CCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 007255 478 KVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 478 ~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
.+. ++.-+..|++...| +.+.+..++......+..+ .+++|...+..++
T Consensus 178 ~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~---~~~it~~~v~~~L 227 (229)
T PRK06893 178 GIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQA---QRKLTIPFVKEIL 227 (229)
T ss_pred CCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHh
Confidence 443 34457899999887 7788888877654333321 3457776666554
No 181
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.59 E-value=4.2e-14 Score=149.99 Aligned_cols=184 Identities=26% Similarity=0.382 Sum_probs=129.3
Q ss_pred cccccccCCcHHHHHH---HHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc
Q 007255 15 WKAEEAIGGNRAAVEA---LRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK 91 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~---l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~ 91 (611)
.+.+++++|+++.+.. |.+++.. ....+++|+||||||||++++++++.++..++.+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 4678999999999776 7776632 134589999999999999999999999999999887542
Q ss_pred ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEee--
Q 007255 92 AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST-- 169 (611)
Q Consensus 92 ~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~tt-- 169 (611)
....++.+++.+......+++.||||||+|.+.. ..+..|+..++.. .+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~----------~~q~~LL~~le~~--------~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK----------AQQDALLPHVEDG--------TITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH----------HHHHHHHHHhhcC--------cEEEEEeCCC
Confidence 1234555565554433344678999999998753 3456777777642 35666654
Q ss_pred cCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCC--CC-C-CcccHHHHHHhccCCccccHHHHHHHH
Q 007255 170 NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV--PL-D-ANVDLEAIATSCNGYVGADLEALCREA 240 (611)
Q Consensus 170 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~--~~-~-~~~~~~~la~~~~g~~~~dl~~l~~~a 240 (611)
|+...+++++++ || ..+.+++++.++...+++..+... .. . .+..+..++..+.|. .+.+.+++..+
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd-~R~aln~Le~~ 200 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGD-ARRALNLLELA 200 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 334588999998 88 589999999999999999876542 11 1 122366777766543 34444444444
No 182
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=6.3e-14 Score=150.46 Aligned_cols=189 Identities=20% Similarity=0.241 Sum_probs=134.1
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------------
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------------- 80 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~-------------- 80 (611)
...|++++|++.+++.|...+.. .+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 36789999999999999888753 1234568999999999999999999988642
Q ss_pred ----------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHH
Q 007255 81 ----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM 150 (611)
Q Consensus 81 ----------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l 150 (611)
++.+++.. ......++.+.+.+...+..++..|++|||+|.|.. ..++.|+..+
T Consensus 80 ~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~----------~a~naLLK~L 143 (546)
T PRK14957 80 VAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK----------QSFNALLKTL 143 (546)
T ss_pred HHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH----------HHHHHHHHHH
Confidence 22222110 011234455655555444456677999999998843 5678899999
Q ss_pred hcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCc
Q 007255 151 DSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYV 229 (611)
Q Consensus 151 ~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~ 229 (611)
++. ++.+.+|.+|+.+..+.+.+++ |+ ..++|.+++.++....++..+...+...+ ..+..++..++| +
T Consensus 144 Eep------p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-d 213 (546)
T PRK14957 144 EEP------PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-S 213 (546)
T ss_pred hcC------CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 873 3356677777778888888988 88 58999999999999999887776554433 236677776654 3
Q ss_pred cccHHHHHHHHH
Q 007255 230 GADLEALCREAT 241 (611)
Q Consensus 230 ~~dl~~l~~~a~ 241 (611)
.+++.++++.+.
T Consensus 214 lR~alnlLek~i 225 (546)
T PRK14957 214 LRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHHH
Confidence 455555555544
No 183
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.59 E-value=8.4e-14 Score=131.91 Aligned_cols=188 Identities=24% Similarity=0.333 Sum_probs=139.3
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELY 361 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~ 361 (611)
..+.+++++|.+..|+.|.+.....+. | .|.+++||+|++|||||++++++.++. |..++.+...++.
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 467899999999999999877654332 3 577899999999999999999999987 7788888887775
Q ss_pred cccccchHHHHHHHHHHHHhc-CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCC--CCCCCeEEEEecCC
Q 007255 362 SMYVGESEALLRNTFQRARLA-APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL--EQAKGILVLAATNR 438 (611)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~~~~~vI~~tn~ 438 (611)
. +..++...+.. .+-|||+||+- .+..+.-.+.|-..|||. ..++++++.+|+|+
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs-------------Fe~~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS-------------FEEGDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC-------------CCCCcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 4 66666666633 34499999863 122234457777778874 46778999999997
Q ss_pred Ccccch-----------------------hccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCc-ccHH----HHHH
Q 007255 439 PHAIDA-----------------------ALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDD-VDLR----SIAE 490 (611)
Q Consensus 439 ~~~ld~-----------------------al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~----~la~ 490 (611)
.+.+.. +|.. ||...|.|..|+.++-.+|++.++..+.+.-+ .++. ..|.
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 553322 2222 99999999999999999999999987776644 3333 2334
Q ss_pred hCCCCCHHHHHHHHH
Q 007255 491 ETELFTGAELEGLCR 505 (611)
Q Consensus 491 ~~~g~s~~~i~~~~~ 505 (611)
...|.||+-..+.+.
T Consensus 229 ~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 229 RRGGRSGRTARQFID 243 (249)
T ss_pred HcCCCCHHHHHHHHH
Confidence 445778887777665
No 184
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.58 E-value=5.2e-14 Score=145.97 Aligned_cols=223 Identities=25% Similarity=0.289 Sum_probs=144.7
Q ss_pred cccchhHHHHHHHHHhhccCCChhHH-hh---cCC-CCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc-cc
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAF-SR---LGI-SPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MY 364 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~-~~---~~~-~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~-~~ 364 (611)
-|+|++++++.+..++....+..... .. -++ ....++||+||||||||++|+++|..++.+|..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 37899999999987763221111100 00 001 12368999999999999999999999999999999888753 57
Q ss_pred ccch-HHHHHHHHHHH----HhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCC-----------CC
Q 007255 365 VGES-EALLRNTFQRA----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ-----------AK 428 (611)
Q Consensus 365 ~g~~-~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----------~~ 428 (611)
+|.. +..+...+..+ ....++||||||+|.+..++...+.........+++.||+.|+|... ..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 8874 34444444322 33467799999999998765433322222234688999999986421 12
Q ss_pred CeEEEEecCCC---------------------------c-----------------------ccchhccCCCCccceeec
Q 007255 429 GILVLAATNRP---------------------------H-----------------------AIDAALMRPGRFDLVLYV 458 (611)
Q Consensus 429 ~~~vI~~tn~~---------------------------~-----------------------~ld~al~r~gRf~~~i~~ 458 (611)
.+++|.|+|-. + -+.|+|+ ||++.++.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 46777777750 0 0223344 599999999
Q ss_pred CCCCHHHHHHHHHHH----hcCC-------CC--C-CcccHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHhh
Q 007255 459 PPPDLEARHEILRVH----TRNM-------KV--G-DDVDLRSIAEET--ELFTGAELEGLCREAGIVALRED 515 (611)
Q Consensus 459 ~~p~~~~r~~il~~~----~~~~-------~~--~-~~~~~~~la~~~--~g~s~~~i~~~~~~a~~~a~~~~ 515 (611)
.+.+.++..+|+... .+++ .+ . ++..++.+++.. ..+-.+.++.+++......+-+.
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 999999999998742 2211 11 1 233366777653 35667788888877666655543
No 185
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.5e-14 Score=157.51 Aligned_cols=210 Identities=17% Similarity=0.210 Sum_probs=144.3
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeec------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS------ 356 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~------ 356 (611)
.+.+.+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++....-.
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 34567899999999999999888763 234567899999999999999999999865321100
Q ss_pred ---c--------hhhcc--ccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHH
Q 007255 357 ---G--------AELYS--MYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLT 419 (611)
Q Consensus 357 ---~--------~~~~~--~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 419 (611)
+ .++.. .........++.+.+.+.. ....|++|||+|.+. ....+.|++
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~naLLk 142 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNALLK 142 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHHHHH
Confidence 0 01000 0001112334555444332 223599999999872 345788999
Q ss_pred HhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHH
Q 007255 420 EMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGA 498 (611)
Q Consensus 420 ~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~ 498 (611)
.|+ ++...++||++|+.++.+.+.+.+ |+. .+.|+.++..+...+++..+...++. ++..+..++..+.| +.+
T Consensus 143 ~LE--epp~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr 216 (585)
T PRK14950 143 TLE--EPPPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMR 216 (585)
T ss_pred HHh--cCCCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 998 455678888888888888888877 776 78899999999998888776655543 34457888888887 778
Q ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 007255 499 ELEGLCREAGIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 499 ~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
++.+.++....+ ....|+.+++...+
T Consensus 217 ~al~~LekL~~y------~~~~It~e~V~~ll 242 (585)
T PRK14950 217 DAENLLQQLATT------YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHHh------cCCCCCHHHHHHHh
Confidence 887777765432 12346666655544
No 186
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=6.2e-14 Score=152.41 Aligned_cols=188 Identities=19% Similarity=0.253 Sum_probs=136.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~--------------- 80 (611)
+.|++++|++.+++.|..++.. .+.+..+||+||+|||||++++.+|+.+++.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 6789999999999999998754 1244667999999999999999999998752
Q ss_pred --------------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHH
Q 007255 81 --------------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQL 146 (611)
Q Consensus 81 --------------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~l 146 (611)
++.+++.+ ......++++.+.+...+..++..|++|||+|.|.. ...+.|
T Consensus 81 C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~----------~a~NaL 144 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN----------TAFNAM 144 (618)
T ss_pred cHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH----------HHHHHH
Confidence 11111110 112334666666655444445667999999998854 457788
Q ss_pred HHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhc
Q 007255 147 FTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSC 225 (611)
Q Consensus 147 l~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~ 225 (611)
+..+++ .+.++.+|.+|+.++.+.+.+++ |+ ..+.|..++.++....++..+...+...+ ..+..++..+
T Consensus 145 LKtLEE------PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 145 LKTLEE------PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHhccc------CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 888886 33457778788888889989998 87 58999999999999999988876655433 3477888877
Q ss_pred cCCccccHHHHHHHHH
Q 007255 226 NGYVGADLEALCREAT 241 (611)
Q Consensus 226 ~g~~~~dl~~l~~~a~ 241 (611)
+| +.+++.++++.+.
T Consensus 216 ~G-slR~al~lLdq~i 230 (618)
T PRK14951 216 RG-SMRDALSLTDQAI 230 (618)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 76 4555556655544
No 187
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.58 E-value=3.1e-14 Score=145.14 Aligned_cols=177 Identities=27% Similarity=0.372 Sum_probs=128.0
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHhhc-CCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc-cccc-c
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRL-GISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MYVG-E 367 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~-~~~g-~ 367 (611)
-|+|++++++.+..++............+ .-.+|+++||+||||||||++|+++|..++.+|+.+++..+.. .|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 47899999999987765321111110000 1224589999999999999999999999999999999988874 6877 5
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 007255 368 SEALLRNTFQRAR------------------------------------------------------------------- 380 (611)
Q Consensus 368 ~~~~~~~~~~~a~------------------------------------------------------------------- 380 (611)
.+..++.+|..+.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5666666665540
Q ss_pred ------------------------------------------------------------------------hcCCcEEE
Q 007255 381 ------------------------------------------------------------------------LAAPSIIF 388 (611)
Q Consensus 381 ------------------------------------------------------------------------~~~p~il~ 388 (611)
..+..|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 11334999
Q ss_pred EcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--------CCCCeEEEEecC----CCcccchhccCCCCcccee
Q 007255 389 FDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--------QAKGILVLAATN----RPHAIDAALMRPGRFDLVL 456 (611)
Q Consensus 389 iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~vI~~tn----~~~~ld~al~r~gRf~~~i 456 (611)
|||||+|+.+..+ ...+....-++..||+.++|-. ..++++||++.. .|+++-|.|. |||..++
T Consensus 253 iDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRV 328 (441)
T ss_pred EEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 9999999876421 1122223458899999998732 245789998764 4666666666 5999999
Q ss_pred ecCCCCHHHHHHHHH
Q 007255 457 YVPPPDLEARHEILR 471 (611)
Q Consensus 457 ~~~~p~~~~r~~il~ 471 (611)
.+..++.++-..||.
T Consensus 329 ~L~~L~~edL~rILt 343 (441)
T TIGR00390 329 ELQALTTDDFERILT 343 (441)
T ss_pred ECCCCCHHHHHHHhc
Confidence 999999999999984
No 188
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=8.6e-14 Score=150.80 Aligned_cols=188 Identities=14% Similarity=0.184 Sum_probs=133.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~--------------- 80 (611)
..|++|+|++.+++.|..++.. -+.+..+||+||+|||||++++.+|+.+++.
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 77 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDA------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCV 77 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHH
Confidence 6789999999999999998754 1244558999999999999999999998752
Q ss_pred -----------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHH
Q 007255 81 -----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (611)
Q Consensus 81 -----------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~ 149 (611)
++.+++.+ ......++++.+.+...+..++..|++|||+|.|.. ..++.|+..
T Consensus 78 ~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~----------~A~NALLK~ 141 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT----------AGFNALLKI 141 (584)
T ss_pred HhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH----------HHHHHHHHH
Confidence 11111110 112344555555554444445667999999998843 467889999
Q ss_pred HhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcc-cHHHHHHhccCC
Q 007255 150 MDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGY 228 (611)
Q Consensus 150 l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~~~~la~~~~g~ 228 (611)
|+. .+.++++|.+|+.++.+.+.+++ |+ ..+.|..++.++..+.+...+...+...+. .+..++..+.|
T Consensus 142 LEE------pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G- 211 (584)
T PRK14952 142 VEE------PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG- 211 (584)
T ss_pred Hhc------CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 987 33467888888888999999998 86 589999999999999999888766544332 35556555443
Q ss_pred ccccHHHHHHHHH
Q 007255 229 VGADLEALCREAT 241 (611)
Q Consensus 229 ~~~dl~~l~~~a~ 241 (611)
+.+++.++++...
T Consensus 212 dlR~aln~Ldql~ 224 (584)
T PRK14952 212 SPRDTLSVLDQLL 224 (584)
T ss_pred CHHHHHHHHHHHH
Confidence 4555555555543
No 189
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=8e-14 Score=151.99 Aligned_cols=189 Identities=21% Similarity=0.259 Sum_probs=139.1
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------------
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------------- 80 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~-------------- 80 (611)
.+.|++++|++.+++.|..++.. .+.+..+||+||+|||||++++.+|+.+++.
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 36789999999999999998754 1245678999999999999999999988642
Q ss_pred ----------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHH
Q 007255 81 ----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM 150 (611)
Q Consensus 81 ----------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l 150 (611)
++.+++. .+.....++.+.+.+...+..++..|++|||+|.|.. ...+.|+..+
T Consensus 80 ~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~----------~a~naLLKtL 143 (559)
T PRK05563 80 KAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST----------GAFNALLKTL 143 (559)
T ss_pred HHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH----------HHHHHHHHHh
Confidence 2222221 1123455777777766655566778999999998843 4577888888
Q ss_pred hcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCc
Q 007255 151 DSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYV 229 (611)
Q Consensus 151 ~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~ 229 (611)
+.. +.++++|.+|+.++.+.+.+++ |+. .+.|++|+.++...+++..+...+...+ ..+..++..+.| .
T Consensus 144 Eep------p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~ 213 (559)
T PRK05563 144 EEP------PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G 213 (559)
T ss_pred cCC------CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 762 3457777778888999999998 885 7899999999999999988876654433 346777777765 4
Q ss_pred cccHHHHHHHHH
Q 007255 230 GADLEALCREAT 241 (611)
Q Consensus 230 ~~dl~~l~~~a~ 241 (611)
.+++.++++.+.
T Consensus 214 ~R~al~~Ldq~~ 225 (559)
T PRK05563 214 MRDALSILDQAI 225 (559)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 190
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=4.4e-14 Score=149.59 Aligned_cols=206 Identities=16% Similarity=0.234 Sum_probs=135.8
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCC
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRG 400 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~ 400 (611)
.++++||||+|+|||+|++++++++ +..+++++..++...+.......-...|+... ..+++|+|||++.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-
Confidence 3579999999999999999999986 67888888877765433221111112233322 356799999999885331
Q ss_pred CCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcc---cchhccCCCCcc--ceeecCCCCHHHHHHHHHHHhc
Q 007255 401 GSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHA---IDAALMRPGRFD--LVLYVPPPDLEARHEILRVHTR 475 (611)
Q Consensus 401 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~il~~~~~ 475 (611)
.....|...++.+...++.+++.+++.|.. +++.+.+ ||. ..+.+++|+.++|..|++..+.
T Consensus 219 -----------~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 219 -----------ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred -----------hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 112233333322223345566655555654 5678887 885 7899999999999999998776
Q ss_pred CCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhc---CC--CCCHHHHHHH
Q 007255 476 NMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSL---KP--ALTKEEIDSY 545 (611)
Q Consensus 476 ~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~---~~--~~~~~~~~~~ 545 (611)
..++. ++.-++.++....+ +.+++.+++...+.......+...+++.+....++... .+ .++.+.|...
T Consensus 286 ~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~t~~~I~~~ 360 (445)
T PRK12422 286 ALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLEAAESVRLTPSKIIRA 360 (445)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhhcccCCCCCHHHHHHH
Confidence 65544 33446778887775 67788887777653222333445779999999998754 22 3566665543
No 191
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=1.2e-13 Score=148.18 Aligned_cols=202 Identities=23% Similarity=0.300 Sum_probs=137.1
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh-----CCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccC
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKR 399 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~ 399 (611)
+.++|||++|+|||+|++|+|+++ +..+++++..++...+...........|... -..+++|+|||++.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 459999999999999999999987 5688999998887665443222111223322 2356799999999885432
Q ss_pred CCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCc---ccchhccCCCCcc--ceeecCCCCHHHHHHHHHHHh
Q 007255 400 GGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPH---AIDAALMRPGRFD--LVLYVPPPDLEARHEILRVHT 474 (611)
Q Consensus 400 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~---~ld~al~r~gRf~--~~i~~~~p~~~~r~~il~~~~ 474 (611)
.....|+..++.+...++.+||.+...|. .+++.|.+ ||. .++.+..||.+.|..||+..+
T Consensus 394 ------------~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 394 ------------STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred ------------HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 11223333333333444556664444454 36778887 875 778999999999999999877
Q ss_pred cCCCCCC-cccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCC-----CCCHHHHHHH
Q 007255 475 RNMKVGD-DVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSLKP-----ALTKEEIDSY 545 (611)
Q Consensus 475 ~~~~~~~-~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~~~-----~~~~~~~~~~ 545 (611)
....+.- +.-++.|+....+ +.++++.++......+... .++++......++..+.+ .++.+.|...
T Consensus 460 ~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~---~~~itl~la~~vL~~~~~~~~~~~it~d~I~~~ 532 (617)
T PRK14086 460 VQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLN---RQPVDLGLTEIVLRDLIPEDSAPEITAAAIMAA 532 (617)
T ss_pred HhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhhccccCCcCCHHHHHHH
Confidence 7665553 3447888888776 7889999988876665543 366888888888876522 3555555443
No 192
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.57 E-value=3.5e-14 Score=144.88 Aligned_cols=177 Identities=26% Similarity=0.370 Sum_probs=129.0
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHhhcC-CCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc-cccc-c
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLG-ISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MYVG-E 367 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~-~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~-~~~g-~ 367 (611)
.|+|++.+++.+..++.....+........ -..++++||+||||||||++|+++|..++.+|+.++++.+.. .|+| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 388999999999887753211111000000 012578999999999999999999999999999999998885 6888 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 007255 368 SEALLRNTFQRAR------------------------------------------------------------------- 380 (611)
Q Consensus 368 ~~~~~~~~~~~a~------------------------------------------------------------------- 380 (611)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4666666666651
Q ss_pred -----------------------------------------------------------------------hcCCcEEEE
Q 007255 381 -----------------------------------------------------------------------LAAPSIIFF 389 (611)
Q Consensus 381 -----------------------------------------------------------------------~~~p~il~i 389 (611)
..+..||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 012349999
Q ss_pred cccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--------CCCCeEEEEecC----CCcccchhccCCCCccceee
Q 007255 390 DEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--------QAKGILVLAATN----RPHAIDAALMRPGRFDLVLY 457 (611)
Q Consensus 390 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~vI~~tn----~~~~ld~al~r~gRf~~~i~ 457 (611)
||||.|+.+.+. +..+....-++..||+.++|-. ..++++||++.. .|+++-|.|. |||+.++.
T Consensus 256 DEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVE 331 (443)
T ss_pred EcchhhcccCCC--CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 999999976432 1222223458899999998732 346789997753 4667777777 49999999
Q ss_pred cCCCCHHHHHHHHH
Q 007255 458 VPPPDLEARHEILR 471 (611)
Q Consensus 458 ~~~p~~~~r~~il~ 471 (611)
+..++.++..+||.
T Consensus 332 L~~L~~~dL~~ILt 345 (443)
T PRK05201 332 LDALTEEDFVRILT 345 (443)
T ss_pred CCCCCHHHHHHHhc
Confidence 99999999999984
No 193
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.57 E-value=4.8e-14 Score=158.71 Aligned_cols=219 Identities=18% Similarity=0.240 Sum_probs=146.7
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc--------
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-------- 362 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~-------- 362 (611)
+..|++.+|+.+.+++..... .+......++|+||||||||++++.+|..++.+++.++.+....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 488999999999988763211 11123346899999999999999999999999998887665432
Q ss_pred -ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCC-------------CCCC
Q 007255 363 -MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL-------------EQAK 428 (611)
Q Consensus 363 -~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------------~~~~ 428 (611)
.|.|...+.+.+.+..+....| |++|||+|.+..... ....+.|+..||.- ..-+
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~----------g~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR----------GDPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC----------CCHHHHHHHHhccccEEEEecccccccccCC
Confidence 3666666666666665554555 999999998853311 12346777777631 1226
Q ss_pred CeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcC-----CCCC------CcccHHHHHHhC-CCCC
Q 007255 429 GILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRN-----MKVG------DDVDLRSIAEET-ELFT 496 (611)
Q Consensus 429 ~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~-----~~~~------~~~~~~~la~~~-~g~s 496 (611)
+++||+|+|.. .++++|+. ||+ +|.++.++.++..+|.+.++.. .... ++..+..+++.+ ..+-
T Consensus 465 ~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 465 DVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred ceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 79999999887 59999998 996 8999999999999999877631 1111 122245555432 2334
Q ss_pred HHHHHHHHHHHHHHHHHhhc-----ccccccHHHHHHHHh
Q 007255 497 GAELEGLCREAGIVALREDI-----SATAVRNRHFQTVKD 531 (611)
Q Consensus 497 ~~~i~~~~~~a~~~a~~~~~-----~~~~i~~~~~~~~l~ 531 (611)
.+.++..+.......+.+.+ ....++..++...+-
T Consensus 541 aR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 541 VRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 45666666655544444332 223566666666663
No 194
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.57 E-value=1.1e-13 Score=135.10 Aligned_cols=204 Identities=13% Similarity=0.107 Sum_probs=126.2
Q ss_pred Cccccccc-c-hhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhC---CcEEeecchhh
Q 007255 286 KVTWEDIG-G-LRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE---ASFFSLSGAEL 360 (611)
Q Consensus 286 ~~~~~~i~-g-~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~---~~~~~~~~~~~ 360 (611)
..+|++.+ | ...+...+.+.... ....+++||||||||||++++++++++. ..+.+++..+.
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 34666655 3 45555555555432 2234799999999999999999998763 44555555442
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCC-eEEEEecCCC
Q 007255 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKG-ILVLAATNRP 439 (611)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~~vI~~tn~~ 439 (611)
... ...+.+... ..++|+|||++.+.++. ...+.+-.+++.+ ...++ .+++.+++.|
T Consensus 85 ~~~--------~~~~~~~~~--~~dlliiDdi~~~~~~~---------~~~~~lf~l~n~~---~e~g~~~li~ts~~~p 142 (235)
T PRK08084 85 AWF--------VPEVLEGME--QLSLVCIDNIECIAGDE---------LWEMAIFDLYNRI---LESGRTRLLITGDRPP 142 (235)
T ss_pred hhh--------hHHHHHHhh--hCCEEEEeChhhhcCCH---------HHHHHHHHHHHHH---HHcCCCeEEEeCCCCh
Confidence 211 112222222 12599999999884321 1122222333322 23444 3555455555
Q ss_pred cc---cchhccCCCCcc--ceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 007255 440 HA---IDAALMRPGRFD--LVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALR 513 (611)
Q Consensus 440 ~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~ 513 (611)
.. +.|.+.+ |+. .++.+.+|+.+++.++++......++. ++.-++.|++..+| +.+.+..++......+..
T Consensus 143 ~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~ 219 (235)
T PRK08084 143 RQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASIT 219 (235)
T ss_pred HHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHh
Confidence 55 5788888 885 799999999999999999755443333 34457899999987 788888888875433322
Q ss_pred hhcccccccHHHHHHHH
Q 007255 514 EDISATAVRNRHFQTVK 530 (611)
Q Consensus 514 ~~~~~~~i~~~~~~~~l 530 (611)
. .++||...+..++
T Consensus 220 ~---~~~it~~~~k~~l 233 (235)
T PRK08084 220 A---QRKLTIPFVKEIL 233 (235)
T ss_pred c---CCCCCHHHHHHHH
Confidence 2 3557776666654
No 195
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=8.1e-14 Score=150.91 Aligned_cols=189 Identities=19% Similarity=0.238 Sum_probs=136.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE--------------
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL-------------- 81 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~-------------- 81 (611)
+.|++|+|++.+++.|..++.. .+.+..+||+||+|+|||++|+.+|+.+++..
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 6789999999999999988754 12345689999999999999999999997531
Q ss_pred ----------EEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHh
Q 007255 82 ----------TVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (611)
Q Consensus 82 ----------~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 151 (611)
+.+++. .......++.+.+.+...+..++..|++|||+|.|.. ..++.|+..++
T Consensus 81 ~i~~~~~~d~~ei~~~------~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~----------~a~naLLK~LE 144 (527)
T PRK14969 81 EIDSGRFVDLIEVDAA------SNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK----------SAFNAMLKTLE 144 (527)
T ss_pred HHhcCCCCceeEeecc------ccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH----------HHHHHHHHHHh
Confidence 111111 0122345666766665555556678999999998843 45778999998
Q ss_pred cCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCcc
Q 007255 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVG 230 (611)
Q Consensus 152 ~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~~ 230 (611)
+. +.++.+|.+|+.++.+.+.+++ |+ ..+.|..++.++....+...+...+...+ ..+..++..++|- .
T Consensus 145 ep------p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gs-l 214 (527)
T PRK14969 145 EP------PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGS-M 214 (527)
T ss_pred CC------CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 72 3357777788888888888988 87 48999999999999999887765554432 2367777776653 4
Q ss_pred ccHHHHHHHHHH
Q 007255 231 ADLEALCREATM 242 (611)
Q Consensus 231 ~dl~~l~~~a~~ 242 (611)
+++.++++.+..
T Consensus 215 r~al~lldqai~ 226 (527)
T PRK14969 215 RDALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHHHH
Confidence 556666665543
No 196
>PRK04195 replication factor C large subunit; Provisional
Probab=99.56 E-value=1.1e-13 Score=149.51 Aligned_cols=189 Identities=25% Similarity=0.366 Sum_probs=133.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~ 95 (611)
+.+++|+|++++++.|..++.... .| .+++++||+||||||||++++++|++++..++.+++++...
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~--------~g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~---- 77 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL--------KG-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT---- 77 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh--------cC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc----
Confidence 678999999999999999986522 11 23689999999999999999999999999999999876432
Q ss_pred chHHHHHHHHHHHHhh-hhc-CCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcc
Q 007255 96 ESEKALREAFSQASSH-ALS-GKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD 173 (611)
Q Consensus 96 ~~~~~l~~~f~~~~~~-~~~-~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~ 173 (611)
...+..+...+... ... .++.||+|||+|.+....+ ...+..++..++.. +..+|++||.+.
T Consensus 78 --~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d------~~~~~aL~~~l~~~--------~~~iIli~n~~~ 141 (482)
T PRK04195 78 --ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED------RGGARAILELIKKA--------KQPIILTANDPY 141 (482)
T ss_pred --HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc------hhHHHHHHHHHHcC--------CCCEEEeccCcc
Confidence 12233333333221 112 2577999999999865321 13456677777632 134666788888
Q ss_pred cccH-HhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCCccccHHHHHHHH
Q 007255 174 AIDP-ALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEALCREA 240 (611)
Q Consensus 174 ~l~~-~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~~~~dl~~l~~~a 240 (611)
.+.+ .+++ |+ ..+.|++|+..++..+++..+...+... +..+..++..+. +|++.+++..
T Consensus 142 ~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~L 203 (482)
T PRK04195 142 DPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDL 203 (482)
T ss_pred ccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHH
Confidence 7777 6765 65 5899999999999999998886655432 234777777665 4666555544
No 197
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.56 E-value=1.3e-13 Score=144.79 Aligned_cols=222 Identities=20% Similarity=0.246 Sum_probs=146.0
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhC---------CcEEeecch
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE---------ASFFSLSGA 358 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~---------~~~~~~~~~ 358 (611)
..+++.|.+...+.|...+...+. + ..+.+++++||||||||++++++++.+. ..++.+++.
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 345789999988888887763221 1 3345799999999999999999998762 467777765
Q ss_pred hhccc----------c---------cc-chHHHHHHHHHHHHh-cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHH
Q 007255 359 ELYSM----------Y---------VG-ESEALLRNTFQRARL-AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTL 417 (611)
Q Consensus 359 ~~~~~----------~---------~g-~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~l 417 (611)
..... . .+ .....+..+++.... ..+.||+|||+|.+.+. ...++..|
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~l 152 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQL 152 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHhH
Confidence 43221 1 01 112334555555433 44679999999999621 12345555
Q ss_pred HHHhcCC-CCCCCeEEEEecCCCc---ccchhccCCCCcc-ceeecCCCCHHHHHHHHHHHhcC-C--CCCCcccHHH--
Q 007255 418 LTEMDGL-EQAKGILVLAATNRPH---AIDAALMRPGRFD-LVLYVPPPDLEARHEILRVHTRN-M--KVGDDVDLRS-- 487 (611)
Q Consensus 418 l~~l~~~-~~~~~~~vI~~tn~~~---~ld~al~r~gRf~-~~i~~~~p~~~~r~~il~~~~~~-~--~~~~~~~~~~-- 487 (611)
+...+.. .+..++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++..++. . ...++..++.
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCA 230 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Confidence 5442211 1336789999999886 47777777 775 67999999999999999977652 1 1122222333
Q ss_pred -HHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Q 007255 488 -IAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSLK 534 (611)
Q Consensus 488 -la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~~ 534 (611)
++..+.| ..+.+..+|+.|...|..+. ...++.+|+..++..+.
T Consensus 231 ~~~~~~~G-d~R~al~~l~~a~~~a~~~~--~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 231 ALAAQEHG-DARKAIDLLRVAGEIAEREG--AERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHH
Confidence 4444456 46667778888887776553 34688888888876653
No 198
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.8e-13 Score=146.88 Aligned_cols=187 Identities=20% Similarity=0.250 Sum_probs=132.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~--------------- 80 (611)
..|++++|++.+++.|..++.. ...+..+||+||||||||++++++|+.+.+.
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~ 78 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA 78 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH
Confidence 5679999999999999988754 1234567999999999999999999988541
Q ss_pred --------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhc
Q 007255 81 --------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDS 152 (611)
Q Consensus 81 --------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~ 152 (611)
++.++++. ......++++.+.+...+..+++.|++|||+|.+.. ..++.|+..++.
T Consensus 79 i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~----------~a~naLLk~LEe 142 (504)
T PRK14963 79 VRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK----------SAFNALLKTLEE 142 (504)
T ss_pred HhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH----------HHHHHHHHHHHh
Confidence 23333221 112334555544444444445678999999987632 457788888876
Q ss_pred CCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCccc
Q 007255 153 NKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGA 231 (611)
Q Consensus 153 ~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~~~ 231 (611)
. ..++++|.+|+.+..+.+.+++ |+. .+.|.+|+.++....++..+...+...+ ..+..++..++|. .+
T Consensus 143 p------~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gd-lR 212 (504)
T PRK14963 143 P------PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGA-MR 212 (504)
T ss_pred C------CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 3 2246777778888899999998 875 8999999999999999998876655432 3477778777654 33
Q ss_pred cHHHHHHHH
Q 007255 232 DLEALCREA 240 (611)
Q Consensus 232 dl~~l~~~a 240 (611)
++.++++.+
T Consensus 213 ~aln~Lekl 221 (504)
T PRK14963 213 DAESLLERL 221 (504)
T ss_pred HHHHHHHHH
Confidence 344444443
No 199
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.9e-13 Score=146.73 Aligned_cols=187 Identities=20% Similarity=0.223 Sum_probs=133.8
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------------
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------------- 80 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~-------------- 80 (611)
...|++++|++.+++.|..++.. -+.+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 36789999999999999887743 1345679999999999999999999998642
Q ss_pred ----------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHH
Q 007255 81 ----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM 150 (611)
Q Consensus 81 ----------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l 150 (611)
++.+++.. ......++.+.+.+...+..++..|++|||+|.|.. ...+.|+..+
T Consensus 80 r~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~----------~A~NaLLKtL 143 (605)
T PRK05896 80 ESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST----------SAWNALLKTL 143 (605)
T ss_pred HHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH----------HHHHHHHHHH
Confidence 12222111 112334666666655554455667999999998843 4567899999
Q ss_pred hcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCc
Q 007255 151 DSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYV 229 (611)
Q Consensus 151 ~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~ 229 (611)
+. +++.+++|.+|+.++.+.+.+++ |+. .+.|++|+.++...+++..+...+.. .+..+..++..+.|.
T Consensus 144 EE------Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd- 213 (605)
T PRK05896 144 EE------PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS- 213 (605)
T ss_pred Hh------CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc-
Confidence 86 33357778888888999999998 875 79999999999999999887665432 223467777777663
Q ss_pred cccHHHHHHH
Q 007255 230 GADLEALCRE 239 (611)
Q Consensus 230 ~~dl~~l~~~ 239 (611)
.+++.++++.
T Consensus 214 lR~AlnlLek 223 (605)
T PRK05896 214 LRDGLSILDQ 223 (605)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 200
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=2.1e-13 Score=149.18 Aligned_cols=192 Identities=20% Similarity=0.286 Sum_probs=136.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE---ccc-----
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI---SPH----- 87 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v---~~~----- 87 (611)
..|++|+|++.+++.|..++.. -+.+..+||+||+|+|||++|+.+|+.+.+.-... .|.
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 5679999999999999998854 12456789999999999999999999986532100 000
Q ss_pred -----ccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCC
Q 007255 88 -----SVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSV 160 (611)
Q Consensus 88 -----~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 160 (611)
++. ..........++.+.+.+...+..++..|++|||+|.|.. ..++.|+..|+. ++
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~----------~A~NALLKtLEE------PP 146 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK----------SAFNALLKTLEE------PP 146 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH----------HHHHHHHHHhhc------CC
Confidence 000 0000112345777777776666666778999999998853 457889999986 33
Q ss_pred CcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcc-cHHHHHHhccCCccccHHHHHHH
Q 007255 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVGADLEALCRE 239 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~~~~la~~~~g~~~~dl~~l~~~ 239 (611)
..+++|.+|+.++.+.+.+++ |+. .+.|.+++.++...+++..+...+...+. .+..++..+.|-. +++..++..
T Consensus 147 ~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gsl-R~AlslLek 222 (725)
T PRK07133 147 KHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSL-RDALSIAEQ 222 (725)
T ss_pred CceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHH
Confidence 467788888888999999998 885 89999999999999999877665544332 3667777776543 344444443
No 201
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.9e-13 Score=153.70 Aligned_cols=193 Identities=18% Similarity=0.154 Sum_probs=133.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE--------EEccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLT--------VISPH 87 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~--------~v~~~ 87 (611)
..|++|+|++.+++.|...+.. -+.+..+||+||+|||||++++.+|+.+++.-- +-+|.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~ 79 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV 79 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHH
Confidence 6789999999999999998753 123456899999999999999999999975210 00010
Q ss_pred c----------cc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCC
Q 007255 88 S----------VH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP 155 (611)
Q Consensus 88 ~----------~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~ 155 (611)
. +. +.........++++.+.+.......+..|+||||+|.|.. ..++.|++.|++.
T Consensus 80 ~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~----------~a~NaLLK~LEEp-- 147 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP----------QGFNALLKIVEEP-- 147 (824)
T ss_pred HHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH----------HHHHHHHHHHhCC--
Confidence 0 10 0000011334455444444333445677999999999854 5678899999973
Q ss_pred CCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCccccHH
Q 007255 156 SKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLE 234 (611)
Q Consensus 156 ~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~~~dl~ 234 (611)
..+++||.+|+.++.|.+.|++ |+ ..+.|..++.++..++++..+...++..+ ..+..++..+.| +.+++.
T Consensus 148 ----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al 219 (824)
T PRK07764 148 ----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSL 219 (824)
T ss_pred ----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 3357777788888889999998 87 48999999999999999988876555433 235667776665 344454
Q ss_pred HHHHHH
Q 007255 235 ALCREA 240 (611)
Q Consensus 235 ~l~~~a 240 (611)
+++++.
T Consensus 220 ~eLEKL 225 (824)
T PRK07764 220 SVLDQL 225 (824)
T ss_pred HHHHHH
Confidence 555443
No 202
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.54 E-value=1.8e-13 Score=133.54 Aligned_cols=200 Identities=15% Similarity=0.111 Sum_probs=132.0
Q ss_pred Cccccccc--chhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhh
Q 007255 286 KVTWEDIG--GLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAEL 360 (611)
Q Consensus 286 ~~~~~~i~--g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~ 360 (611)
+.+|+++. +.+.+...+.++.. +.....+++|+||+|||||++|++++++. +..++.+++.++
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 45677765 34555566666544 22445679999999999999999999876 667777777664
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCc
Q 007255 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPH 440 (611)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 440 (611)
... + .....+++|+|||+|.+-. .....|+..++.....+..++|.+++.+.
T Consensus 82 ~~~------------~--~~~~~~~~liiDdi~~l~~--------------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 82 LLA------------F--DFDPEAELYAVDDVERLDD--------------AQQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred HHH------------H--hhcccCCEEEEeChhhcCc--------------hHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 321 1 1123456999999997721 11234444444333444544454555432
Q ss_pred ---ccchhccCCCCc--cceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007255 441 ---AIDAALMRPGRF--DLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALRE 514 (611)
Q Consensus 441 ---~ld~al~r~gRf--~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~ 514 (611)
.+.+.+.+ || ...+.+|+|+.+++..+++.......+. ++..+..|+....| +.+++..+++....++...
T Consensus 134 ~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~ 210 (227)
T PRK08903 134 LALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQ 210 (227)
T ss_pred HhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh
Confidence 24566665 66 4699999999999999998766555444 33457888887777 8889999888766555444
Q ss_pred hcccccccHHHHHHHHh
Q 007255 515 DISATAVRNRHFQTVKD 531 (611)
Q Consensus 515 ~~~~~~i~~~~~~~~l~ 531 (611)
.++|+.....+++.
T Consensus 211 ---~~~i~~~~~~~~l~ 224 (227)
T PRK08903 211 ---KRPVTLPLLREMLA 224 (227)
T ss_pred ---CCCCCHHHHHHHHh
Confidence 36788888777764
No 203
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.54 E-value=1.6e-13 Score=134.01 Aligned_cols=203 Identities=20% Similarity=0.227 Sum_probs=130.5
Q ss_pred ccccccc--chhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhc
Q 007255 287 VTWEDIG--GLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELY 361 (611)
Q Consensus 287 ~~~~~i~--g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~ 361 (611)
.+|++.+ +.+.+.+.+++++.. ..+.+++|+||+|||||++|++++.++ +.+++.+++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 3555654 355666777766431 345689999999999999999999887 4678888888775
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcc
Q 007255 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHA 441 (611)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 441 (611)
... ..++... ..+.+|+|||+|.+... ......|...++.....+..+++.++..+..
T Consensus 79 ~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~------------~~~~~~L~~~l~~~~~~~~~iIits~~~~~~ 136 (226)
T TIGR03420 79 QAD--------PEVLEGL--EQADLVCLDDVEAIAGQ------------PEWQEALFHLYNRVREAGGRLLIAGRAAPAQ 136 (226)
T ss_pred HhH--------HHHHhhc--ccCCEEEEeChhhhcCC------------hHHHHHHHHHHHHHHHcCCeEEEECCCChHH
Confidence 422 2223222 23459999999987321 0112333333332223334445444444544
Q ss_pred cc---hhccCCCCc--cceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Q 007255 442 ID---AALMRPGRF--DLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALRED 515 (611)
Q Consensus 442 ld---~al~r~gRf--~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~ 515 (611)
++ +.+.+ |+ ...+.+|+|+.+++..+++....+..+. ++..+..|+..+.| +.+++.++++.+...+....
T Consensus 137 ~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~~~~~~~ 213 (226)
T TIGR03420 137 LPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDRASLAAK 213 (226)
T ss_pred CCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhC
Confidence 32 56665 65 4789999999999999999766544443 34457888887655 89999999998776655543
Q ss_pred cccccccHHHHHHHH
Q 007255 516 ISATAVRNRHFQTVK 530 (611)
Q Consensus 516 ~~~~~i~~~~~~~~l 530 (611)
..|+.....+++
T Consensus 214 ---~~i~~~~~~~~~ 225 (226)
T TIGR03420 214 ---RKITIPFVKEVL 225 (226)
T ss_pred ---CCCCHHHHHHHh
Confidence 457666655544
No 204
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2e-13 Score=149.62 Aligned_cols=187 Identities=16% Similarity=0.226 Sum_probs=136.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~--------------- 80 (611)
..|++|+|++.+++.|...+.. -+.+..+||+||+|+|||++++.+|+.+++.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~ 80 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHH
Confidence 6789999999999999988753 1345678999999999999999999998653
Q ss_pred ---------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHh
Q 007255 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (611)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 151 (611)
++.+++.+ ......++++.+.+...+...+..|++|||+|.|.. ...+.|+..|+
T Consensus 81 ~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~----------~a~naLLk~LE 144 (576)
T PRK14965 81 EITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST----------NAFNALLKTLE 144 (576)
T ss_pred HHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH----------HHHHHHHHHHH
Confidence 12222111 112345666666665554455667999999998853 45788999999
Q ss_pred cCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCCcc
Q 007255 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVG 230 (611)
Q Consensus 152 ~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~~~ 230 (611)
+ +++++++|.+|+.++.+.+.+++ |+. .+.|..++.++....+...+...+... +..+..++..++|- .
T Consensus 145 e------pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~-l 214 (576)
T PRK14965 145 E------PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGS-M 214 (576)
T ss_pred c------CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-H
Confidence 7 33467888888888999999998 874 889999999999999988777665442 23477777777763 3
Q ss_pred ccHHHHHHHH
Q 007255 231 ADLEALCREA 240 (611)
Q Consensus 231 ~dl~~l~~~a 240 (611)
+++.++++.+
T Consensus 215 r~al~~Ldql 224 (576)
T PRK14965 215 RDSLSTLDQV 224 (576)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 205
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.7e-13 Score=150.47 Aligned_cols=189 Identities=19% Similarity=0.251 Sum_probs=140.9
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc------------
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS------------ 351 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~------------ 351 (611)
+.+.+|++|+|++.+++.|...+.. ...++.+|||||+|+|||++|+++|..++|.
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 4567899999999999999998873 2456789999999999999999999998653
Q ss_pred -------------EEeecchhhccccccchHHHHHHHHHHHHhcC----CcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 352 -------------FFSLSGAELYSMYVGESEALLRNTFQRARLAA----PSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 352 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~----p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
++.+++.+ ......++.+.+.+.... ..|++|||+|.+- ....
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~ 138 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAF 138 (614)
T ss_pred hHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHH
Confidence 22222211 111344666665554322 3499999999872 3567
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHhCC
Q 007255 415 STLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDD-VDLRSIAEETE 493 (611)
Q Consensus 415 ~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~ 493 (611)
+.|++.|+ ++++.+++|++|+.+..+-+++++ |+. ++.|..++.++....++..+.+.++..+ ..+..++..+.
T Consensus 139 naLLK~LE--epp~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~ 213 (614)
T PRK14971 139 NAFLKTLE--EPPSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD 213 (614)
T ss_pred HHHHHHHh--CCCCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 89999998 567788888889888999999988 886 7999999999999888877766655433 45788888887
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007255 494 LFTGAELEGLCREAGIV 510 (611)
Q Consensus 494 g~s~~~i~~~~~~a~~~ 510 (611)
| +.+++.+.+.....+
T Consensus 214 g-dlr~al~~Lekl~~y 229 (614)
T PRK14971 214 G-GMRDALSIFDQVVSF 229 (614)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 6 677777766654433
No 206
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.53 E-value=2.6e-13 Score=138.42 Aligned_cols=183 Identities=21% Similarity=0.351 Sum_probs=131.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc-cccc-
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLG-LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK-AHVG- 95 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g-~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~-~~~~- 95 (611)
.-|+|++++++.+..++...+........+. ...|.++||+||||||||++++++|+.++.+++.+++..+.. .+.|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 3589999999999998876544332211111 225689999999999999999999999999999999887763 5666
Q ss_pred chHHHHHHHHHHHHh--------------------------------h--------------------------------
Q 007255 96 ESEKALREAFSQASS--------------------------------H-------------------------------- 111 (611)
Q Consensus 96 ~~~~~l~~~f~~~~~--------------------------------~-------------------------------- 111 (611)
..+..++.+|..+.. .
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 455666666655400 0
Q ss_pred -----------------------------------------------------------------------hhcCCCeEE
Q 007255 112 -----------------------------------------------------------------------ALSGKPSVV 120 (611)
Q Consensus 112 -----------------------------------------------------------------------~~~~~~~il 120 (611)
....+.+|+
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 001355799
Q ss_pred EEccccccCCCCC--CCchhhHHHHHHHHHHHhcCCCC----CCCCCcEEEEEee----cCcccccHHhhccCCcceEEE
Q 007255 121 FIDEIDALCPRRD--HRREQDVRIASQLFTLMDSNKPS----KTSVPHVVVVAST----NRVDAIDPALRRSGRFDAEVE 190 (611)
Q Consensus 121 ~IDeid~l~~~~~--~~~~~~~~~~~~ll~~l~~~~~~----~~~~~~v~ii~tt----n~~~~l~~~l~~~~Rf~~~i~ 190 (611)
||||||.++.... +.......+++.|+.++++..-. .....+++||++- ..|+++=|.|.- ||...+.
T Consensus 252 fiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~ 329 (441)
T TIGR00390 252 FIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVE 329 (441)
T ss_pred EEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEE
Confidence 9999999997653 22233446899999999873221 1123468888874 235667788865 9999999
Q ss_pred ccCCCHHHHHHHH
Q 007255 191 VTVPTAEERFEIL 203 (611)
Q Consensus 191 ~~~p~~~~r~~Il 203 (611)
+.+++.++..+||
T Consensus 330 L~~L~~edL~rIL 342 (441)
T TIGR00390 330 LQALTTDDFERIL 342 (441)
T ss_pred CCCCCHHHHHHHh
Confidence 9999999999998
No 207
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.53 E-value=4.9e-13 Score=138.80 Aligned_cols=228 Identities=18% Similarity=0.269 Sum_probs=144.3
Q ss_pred ccCCcHHHHHHHHHHHHhhhhCchHH--Hh--cCCC-CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc-cc
Q 007255 20 AIGGNRAAVEALRELITFPLLYSSQA--QK--LGLK-WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK-AH 93 (611)
Q Consensus 20 ~i~G~~~~~~~l~~~l~~~~~~~~~~--~~--~g~~-~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~-~~ 93 (611)
.++|++++++.+..++...+...... .. .+.. ...++||+||||||||++|+++|+.++.++..+++..+.. .+
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 46999999999988875433321110 00 0111 2368999999999999999999999999999998887642 35
Q ss_pred ccch-HHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCC----chhhHHHHHHHHHHHhcCCC-------CCCCCC
Q 007255 94 VGES-EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR----REQDVRIASQLFTLMDSNKP-------SKTSVP 161 (611)
Q Consensus 94 ~~~~-~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~----~~~~~~~~~~ll~~l~~~~~-------~~~~~~ 161 (611)
.|.. ...+..++..........+++||||||+|.+.+..++. ......+++.|+..|++... ...+..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 5553 33344443332211123457899999999998753321 11223688899999975321 111234
Q ss_pred cEEEEEeecCc---------------------------c-----------------------cccHHhhccCCcceEEEc
Q 007255 162 HVVVVASTNRV---------------------------D-----------------------AIDPALRRSGRFDAEVEV 191 (611)
Q Consensus 162 ~v~ii~ttn~~---------------------------~-----------------------~l~~~l~~~~Rf~~~i~~ 191 (611)
+.++|.|+|.. + .+.|+|.. |++..+.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeec
Confidence 56777777651 0 13366654 99988999
Q ss_pred cCCCHHHHHHHHHHh----hcC----C---CCCC---cccHHHHHHhc--cCCccccHHHHHHHHHHHHhhhcc
Q 007255 192 TVPTAEERFEILKLY----TKK----V---PLDA---NVDLEAIATSC--NGYVGADLEALCREATMSAVKRSS 249 (611)
Q Consensus 192 ~~p~~~~r~~Il~~~----~~~----~---~~~~---~~~~~~la~~~--~g~~~~dl~~l~~~a~~~a~~r~~ 249 (611)
.+.+.+++.+|+... .++ + .... +.-++.+++.+ ..+-+|.|+.+++..+...+....
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p 389 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLP 389 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCC
Confidence 999999999998652 221 1 1111 12266677653 345667888888877766655443
No 208
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=3e-13 Score=145.95 Aligned_cols=178 Identities=16% Similarity=0.181 Sum_probs=126.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~--------------- 80 (611)
..|++|+|++.+++.|..++.. -+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~ 80 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQE------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHH
Confidence 6789999999999999988753 1235689999999999999999999999753
Q ss_pred ---------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHh
Q 007255 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (611)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 151 (611)
++.+++.. ......++.+.+........++..|+||||+|.|.. ..++.|+..++
T Consensus 81 ~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~----------~a~naLLk~LE 144 (624)
T PRK14959 81 KVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR----------EAFNALLKTLE 144 (624)
T ss_pred HHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH----------HHHHHHHHHhh
Confidence 22222211 011223444433333333345567999999998843 45788888888
Q ss_pred cCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCcc
Q 007255 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVG 230 (611)
Q Consensus 152 ~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~ 230 (611)
.. ..++++|.+|+.++.+.+.+++ |+. .+.|+.++.++...+++..+...... ....+..++..+.|...
T Consensus 145 EP------~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 145 EP------PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred cc------CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 62 2357788888888889989988 874 78999999999999998877665543 22346777777665433
No 209
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=4.7e-13 Score=142.36 Aligned_cols=205 Identities=15% Similarity=0.209 Sum_probs=139.1
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh-----CCcEEeecchhhccccccchHH---HHHHHHHHHHhcCCcEEEEcccccc
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSMYVGESEA---LLRNTFQRARLAAPSIIFFDEADVV 395 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~a~~~~p~il~iDeid~l 395 (611)
.++++||||+|+|||+|++++++++ +..++++++.++...+...... .+..+... ...+++|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 3569999999999999999999965 4788899998887765443221 12222111 235679999999988
Q ss_pred cccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcc---cchhccCCCCcc--ceeecCCCCHHHHHHHH
Q 007255 396 GAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHA---IDAALMRPGRFD--LVLYVPPPDLEARHEIL 470 (611)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~il 470 (611)
.++ ......|...++.+...++.+||.+...|+. +++.+.+ ||. ..+.+.+|+.++|.+|+
T Consensus 219 ~~k------------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 219 SYK------------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred cCC------------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHH
Confidence 533 1222334333333334455566645555654 4667777 875 78889999999999999
Q ss_pred HHHhcCCCC---CCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCC----CCCHHHHH
Q 007255 471 RVHTRNMKV---GDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSLKP----ALTKEEID 543 (611)
Q Consensus 471 ~~~~~~~~~---~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~~~----~~~~~~~~ 543 (611)
+..++..+. .++..++.|+..+.| +.+.+.++|..+...+..... .++++......++..+.. .++.+.|.
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~-~~~it~~~v~~~l~~~~~~~~~~~t~~~I~ 362 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPE-EKIITIEIVSDLFRDIPTSKLGILNVKKIK 362 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccC-CCCCCHHHHHHHHhhccccccCCCCHHHHH
Confidence 977765432 344557889999988 899999999988765554321 257999999998876532 25666655
Q ss_pred HHH
Q 007255 544 SYS 546 (611)
Q Consensus 544 ~~~ 546 (611)
...
T Consensus 363 ~~V 365 (450)
T PRK14087 363 EVV 365 (450)
T ss_pred HHH
Confidence 443
No 210
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.53 E-value=1.4e-13 Score=134.37 Aligned_cols=215 Identities=20% Similarity=0.293 Sum_probs=140.5
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEcccccc
Q 007255 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH---LTVISPHSVH 90 (611)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~---~~~v~~~~~~ 90 (611)
..+.+++.+|+++.+.+ ...+...+.. ..-..++|+||||||||++|+.++.....+ |+.+++...
T Consensus 133 RPktL~dyvGQ~hlv~q-~gllrs~ieq---------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a- 201 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQ-DGLLRSLIEQ---------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA- 201 (554)
T ss_pred CcchHHHhcchhhhcCc-chHHHHHHHc---------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-
Confidence 34778889999888765 3333222221 123689999999999999999999987655 777776543
Q ss_pred cccccchHHHHHHHHHHHHhhhh-cCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 007255 91 KAHVGESEKALREAFSQASSHAL-SGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST 169 (611)
Q Consensus 91 ~~~~~~~~~~l~~~f~~~~~~~~-~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~tt 169 (611)
....++++|++++.... ..+..||||||+|.+... -+..++-..+. +.|++|++|
T Consensus 202 ------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks----------QQD~fLP~VE~--------G~I~lIGAT 257 (554)
T KOG2028|consen 202 ------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS----------QQDTFLPHVEN--------GDITLIGAT 257 (554)
T ss_pred ------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh----------hhhcccceecc--------CceEEEecc
Confidence 23458889998887654 356789999999987542 23444444432 357888876
Q ss_pred --cCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhc---C-----CCCCC------cccHHHHHHhccCCccccH
Q 007255 170 --NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTK---K-----VPLDA------NVDLEAIATSCNGYVGADL 233 (611)
Q Consensus 170 --n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~---~-----~~~~~------~~~~~~la~~~~g~~~~dl 233 (611)
|+.-.++.+|.+ |+. ++.+...+.+....|+.+-.. . .++.. +.-+++++..+.|-....|
T Consensus 258 TENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 258 TENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 445589999999 874 788899999999999986332 1 11222 2237888999988766655
Q ss_pred HHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhc
Q 007255 234 EALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSV 271 (611)
Q Consensus 234 ~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~ 271 (611)
..|-- +......|.... ....++.+|.+...+.
T Consensus 335 N~Lem-s~~m~~tr~g~~----~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 335 NALEM-SLSMFCTRSGQS----SRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHH-HHHHHHhhcCCc----ccceecHHHHHHHHhh
Confidence 44422 222333333321 2345666777666543
No 211
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=5.7e-13 Score=142.33 Aligned_cols=191 Identities=19% Similarity=0.183 Sum_probs=135.6
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------------
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------------- 80 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~-------------- 80 (611)
...|++++|++.+++.|...+.. -+.+..+||+||+|+|||++++++|+.+.+.
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 36789999999999999998743 1345667999999999999999999988431
Q ss_pred ----------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHH
Q 007255 81 ----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM 150 (611)
Q Consensus 81 ----------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l 150 (611)
++.+++.+ ......++.+.......+..++..|++|||+|.|.. ..++.|+..+
T Consensus 78 ~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~----------~A~NALLK~L 141 (535)
T PRK08451 78 QSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK----------EAFNALLKTL 141 (535)
T ss_pred HHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH----------HHHHHHHHHH
Confidence 22222111 011234555554433333334567999999998854 5678899999
Q ss_pred hcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCCc
Q 007255 151 DSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYV 229 (611)
Q Consensus 151 ~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~~ 229 (611)
+.. +.++.+|.+|+.+..+.+.+++ |+ ..+.|.+++.++....+...+...+... +..+..++..+.| +
T Consensus 142 EEp------p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 142 EEP------PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred hhc------CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 873 2346677777778999999999 86 4899999999999999998887655442 2346777777665 5
Q ss_pred cccHHHHHHHHHHH
Q 007255 230 GADLEALCREATMS 243 (611)
Q Consensus 230 ~~dl~~l~~~a~~~ 243 (611)
.+++.++++.+...
T Consensus 212 lR~alnlLdqai~~ 225 (535)
T PRK08451 212 LRDTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666776665543
No 212
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.53 E-value=2.2e-13 Score=139.01 Aligned_cols=184 Identities=24% Similarity=0.355 Sum_probs=131.5
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc-cccc-
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGL-KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK-AHVG- 95 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~-~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~-~~~~- 95 (611)
..|+|++++++.+..++...+........... ..|.++||+||||||||++++.+|+.++.+++.++++.+.. .|.|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 34999999999999988654432221111111 13589999999999999999999999999999999987774 5666
Q ss_pred chHHHHHHHHHHHH------------------------------------------------------------------
Q 007255 96 ESEKALREAFSQAS------------------------------------------------------------------ 109 (611)
Q Consensus 96 ~~~~~l~~~f~~~~------------------------------------------------------------------ 109 (611)
..+..++.+|..+.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 44556666666551
Q ss_pred ----h--h--------------------------------------------------------------hhcCCCeEEE
Q 007255 110 ----S--H--------------------------------------------------------------ALSGKPSVVF 121 (611)
Q Consensus 110 ----~--~--------------------------------------------------------------~~~~~~~il~ 121 (611)
. . ....+.+|+|
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 0 0 0012457999
Q ss_pred EccccccCCCCCC--CchhhHHHHHHHHHHHhcCCCC----CCCCCcEEEEEee----cCcccccHHhhccCCcceEEEc
Q 007255 122 IDEIDALCPRRDH--RREQDVRIASQLFTLMDSNKPS----KTSVPHVVVVAST----NRVDAIDPALRRSGRFDAEVEV 191 (611)
Q Consensus 122 IDeid~l~~~~~~--~~~~~~~~~~~ll~~l~~~~~~----~~~~~~v~ii~tt----n~~~~l~~~l~~~~Rf~~~i~~ 191 (611)
|||||.++...++ .......+++.||.++++..-. .....+++|||+- ..|+++-|.|.- ||...+.+
T Consensus 255 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 332 (443)
T PRK05201 255 IDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVEL 332 (443)
T ss_pred EEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 9999999976532 2233456899999999873221 1123468888873 235667789965 99999999
Q ss_pred cCCCHHHHHHHHH
Q 007255 192 TVPTAEERFEILK 204 (611)
Q Consensus 192 ~~p~~~~r~~Il~ 204 (611)
.+++.++..+||.
T Consensus 333 ~~L~~~dL~~ILt 345 (443)
T PRK05201 333 DALTEEDFVRILT 345 (443)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999999983
No 213
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.53 E-value=4.9e-13 Score=139.85 Aligned_cols=186 Identities=24% Similarity=0.311 Sum_probs=131.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~--------------- 80 (611)
..+++++|++.+++.|.+.+.. -..+..+||+||||+|||++++.+++.+.+.
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~ 78 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCK 78 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 4568999999999999988743 1245679999999999999999999998543
Q ss_pred ---------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHh
Q 007255 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (611)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 151 (611)
++.++.. .......++.+++.+...+..+...|++|||+|.+.. ..++.++..++
T Consensus 79 ~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~----------~~~~~Ll~~le 142 (355)
T TIGR02397 79 EINSGSSLDVIEIDAA------SNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK----------SAFNALLKTLE 142 (355)
T ss_pred HHhcCCCCCEEEeecc------ccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH----------HHHHHHHHHHh
Confidence 1222211 0122345667777766555556677999999998743 34677888886
Q ss_pred cCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCcc
Q 007255 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVG 230 (611)
Q Consensus 152 ~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~~ 230 (611)
.. ++++++|.+|+.++.+.+.+++ |+. .+.|++|+.++...++..++...+..-+ ..+..++..+.| ..
T Consensus 143 ~~------~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~ 212 (355)
T TIGR02397 143 EP------PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SL 212 (355)
T ss_pred CC------ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-Ch
Confidence 52 2356777778888888899998 874 7899999999999999988876654322 346667776655 33
Q ss_pred ccHHHHHHH
Q 007255 231 ADLEALCRE 239 (611)
Q Consensus 231 ~dl~~l~~~ 239 (611)
+.+.+.++.
T Consensus 213 ~~a~~~lek 221 (355)
T TIGR02397 213 RDALSLLDQ 221 (355)
T ss_pred HHHHHHHHH
Confidence 334444433
No 214
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.52 E-value=1.3e-12 Score=121.27 Aligned_cols=206 Identities=21% Similarity=0.242 Sum_probs=148.5
Q ss_pred ccccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCc
Q 007255 4 KGRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAH 80 (611)
Q Consensus 4 ~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~ 80 (611)
++...+.+.....++.+|+|.+.+++.|.+.....+. | .+.+|+||+|.-|||||++++++.+++ +..
T Consensus 45 ~~~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 45 IGYLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAE--------G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred cCcccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 4556677777778999999999999999887655322 2 355899999999999999999998887 567
Q ss_pred EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCC
Q 007255 81 LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSV 160 (611)
Q Consensus 81 ~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 160 (611)
+++|+.+++.. +-.+++..+.. .++.|||+||+- +.. .......|-..+++.-.. .+
T Consensus 116 LVEV~k~dl~~---------Lp~l~~~Lr~~---~~kFIlFcDDLS--Fe~-------gd~~yK~LKs~LeG~ve~--rP 172 (287)
T COG2607 116 LVEVDKEDLAT---------LPDLVELLRAR---PEKFILFCDDLS--FEE-------GDDAYKALKSALEGGVEG--RP 172 (287)
T ss_pred EEEEcHHHHhh---------HHHHHHHHhcC---CceEEEEecCCC--CCC-------CchHHHHHHHHhcCCccc--CC
Confidence 88888777643 44455555433 357899999983 111 113356666777765433 45
Q ss_pred CcEEEEEeecCccccc--------------------HHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcc-cH-
Q 007255 161 PHVVVVASTNRVDAID--------------------PALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DL- 218 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~--------------------~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~~- 218 (611)
.+|+|.+|+|+...++ +.+.-+.||...+.|++++.++..+|+.++.+...++.+. .+
T Consensus 173 ~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~ 252 (287)
T COG2607 173 ANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELH 252 (287)
T ss_pred CeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999865333 2222245999999999999999999999999988877532 22
Q ss_pred ---HHHHHhccCCccccHHHHHHHHH
Q 007255 219 ---EAIATSCNGYVGADLEALCREAT 241 (611)
Q Consensus 219 ---~~la~~~~g~~~~dl~~l~~~a~ 241 (611)
...|..-.|.+|+...++++...
T Consensus 253 ~eAl~WAt~rg~RSGR~A~QF~~~~~ 278 (287)
T COG2607 253 AEALQWATTRGGRSGRVAWQFIRDLA 278 (287)
T ss_pred HHHHHHHHhcCCCccHhHHHHHHHHH
Confidence 22344456788888877776543
No 215
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=6.2e-13 Score=142.30 Aligned_cols=194 Identities=21% Similarity=0.288 Sum_probs=131.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------EE-EEccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------LT-VISPH 87 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~-------~~-~v~~~ 87 (611)
..|++++|++.+++.|...+.. .+.+..+||+||+|+|||++++.+|+.+++. +- +.+|.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 6789999999999999988743 1234568999999999999999999998641 00 00110
Q ss_pred c--------cc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC
Q 007255 88 S--------VH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK 157 (611)
Q Consensus 88 ~--------~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 157 (611)
. +. +.........++.+.+.+...+..++..|++|||+|.|.. ...+.|+..++..
T Consensus 81 ~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~----------~a~naLLk~LEep---- 146 (486)
T PRK14953 81 EIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK----------EAFNALLKTLEEP---- 146 (486)
T ss_pred HHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH----------HHHHHHHHHHhcC----
Confidence 0 10 0001111233555555555555556778999999998743 4467788888753
Q ss_pred CCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCccccHHHH
Q 007255 158 TSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEAL 236 (611)
Q Consensus 158 ~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~~~dl~~l 236 (611)
++.+++|.+|+.++.+.+.+.+ |+. .+.|++|+.+++..++...+...+...+ ..+..++..+.|- .+++.++
T Consensus 147 --p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~-lr~al~~ 220 (486)
T PRK14953 147 --PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGG-MRDAASL 220 (486)
T ss_pred --CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHH
Confidence 2345666667777889999988 875 7999999999999999998877665432 2366777766643 4455555
Q ss_pred HHHHH
Q 007255 237 CREAT 241 (611)
Q Consensus 237 ~~~a~ 241 (611)
++.+.
T Consensus 221 Ldkl~ 225 (486)
T PRK14953 221 LDQAS 225 (486)
T ss_pred HHHHH
Confidence 55443
No 216
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.52 E-value=4.9e-13 Score=137.73 Aligned_cols=203 Identities=24% Similarity=0.269 Sum_probs=137.2
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhC-----CcEEeecc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE-----ASFFSLSG 357 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~-----~~~~~~~~ 357 (611)
.+.+.+|++++|++.+++.+..++.. + . ..+++|+||||||||++++++++++. ..++.+++
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~-~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKE-----------K-N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhC-----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 44567899999999999999988763 1 1 22589999999999999999999873 23445544
Q ss_pred hhhccccccchHHHHHHHHHH-HHh-----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeE
Q 007255 358 AELYSMYVGESEALLRNTFQR-ARL-----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGIL 431 (611)
Q Consensus 358 ~~~~~~~~g~~~~~~~~~~~~-a~~-----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 431 (611)
++-.+ ...++..+.. +.. ..+.+++|||+|.+. ....+.|+..++. ....+.
T Consensus 77 ~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~--------------~~~~~~L~~~le~--~~~~~~ 134 (319)
T PRK00440 77 SDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT--------------SDAQQALRRTMEM--YSQNTR 134 (319)
T ss_pred ccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC--------------HHHHHHHHHHHhc--CCCCCe
Confidence 33211 1112222222 221 224599999999873 2234667777774 334566
Q ss_pred EEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007255 432 VLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIV 510 (611)
Q Consensus 432 vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~ 510 (611)
+|+++|.+..+.+++.+ |+. .+.|++++.++...+++..+++.++. ++..+..++..+.| +.+.+.+.++.+...
T Consensus 135 lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~~ 210 (319)
T PRK00440 135 FILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAAT 210 (319)
T ss_pred EEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 77788888888788877 776 68999999999999999877665543 44568888888776 555555555544332
Q ss_pred HHHhhcccccccHHHHHHHHh
Q 007255 511 ALREDISATAVRNRHFQTVKD 531 (611)
Q Consensus 511 a~~~~~~~~~i~~~~~~~~l~ 531 (611)
...|+.+++..+..
T Consensus 211 -------~~~it~~~v~~~~~ 224 (319)
T PRK00440 211 -------GKEVTEEAVYKITG 224 (319)
T ss_pred -------CCCCCHHHHHHHhC
Confidence 24577777776664
No 217
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.52 E-value=1.4e-12 Score=143.95 Aligned_cols=220 Identities=21% Similarity=0.236 Sum_probs=137.4
Q ss_pred cccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CC
Q 007255 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EA 350 (611)
Q Consensus 281 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~ 350 (611)
.....+.+|++++|++...+.+...+.. ..+.+++|+||||||||++|+++++.. +.
T Consensus 145 ~~~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~ 211 (615)
T TIGR02903 145 QSLLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDA 211 (615)
T ss_pred hhhcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCC
Confidence 3334567899999999988877665542 224569999999999999999998765 35
Q ss_pred cEEeecchhhcc-------ccccchHH----HHHHHHHH----------HHhcCCcEEEEcccccccccCCCCCCCCcch
Q 007255 351 SFFSLSGAELYS-------MYVGESEA----LLRNTFQR----------ARLAAPSIIFFDEADVVGAKRGGSSSTSITV 409 (611)
Q Consensus 351 ~~~~~~~~~~~~-------~~~g~~~~----~~~~~~~~----------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~ 409 (611)
+|+.+++..+.. .+.|.... ..+..+.. ....+..+|||||++.+-
T Consensus 212 ~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld------------- 278 (615)
T TIGR02903 212 PFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD------------- 278 (615)
T ss_pred CeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-------------
Confidence 688888766521 11111000 00111110 112235599999998772
Q ss_pred hHHHHHHHHHHhcCCC--------------------------CCCCeEEEEec-CCCcccchhccCCCCccceeecCCCC
Q 007255 410 GERLLSTLLTEMDGLE--------------------------QAKGILVLAAT-NRPHAIDAALMRPGRFDLVLYVPPPD 462 (611)
Q Consensus 410 ~~~~~~~ll~~l~~~~--------------------------~~~~~~vI~~t-n~~~~ld~al~r~gRf~~~i~~~~p~ 462 (611)
......|+..|+.-. ....+++|++| +.++.+++++++ ||. .+.|++++
T Consensus 279 -~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls 354 (615)
T TIGR02903 279 -PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLT 354 (615)
T ss_pred -HHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCC
Confidence 344556666654210 12235666554 568889999988 998 67888999
Q ss_pred HHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc------ccccccHHHHHHHHhh
Q 007255 463 LEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDI------SATAVRNRHFQTVKDS 532 (611)
Q Consensus 463 ~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~------~~~~i~~~~~~~~l~~ 532 (611)
.+++..|++..+...... ++..+..++..+. .++...+++..+...++.+.. ....|+.+|+..++..
T Consensus 355 ~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 355 PEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 999999999887765432 2333455666543 455555555555444332221 1236788888888853
No 218
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=5.5e-13 Score=144.82 Aligned_cols=195 Identities=22% Similarity=0.255 Sum_probs=135.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE-------EE-Ecc
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL-------TV-ISP 86 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~-------~~-v~~ 86 (611)
...|++|+|++.+++.|..++.. -..+..+||+||+|+|||++++++|+.+++.- -. -+|
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 35679999999999999998753 12456799999999999999999999987531 00 000
Q ss_pred ccccc-------cccc---chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC
Q 007255 87 HSVHK-------AHVG---ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS 156 (611)
Q Consensus 87 ~~~~~-------~~~~---~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 156 (611)
..+.. ...| .....++.+.+.+...+..++..|++|||+|.|.. ..++.|+..++.
T Consensus 80 ~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~----------~a~naLLK~LEe---- 145 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN----------SAFNALLKTIEE---- 145 (563)
T ss_pred HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH----------HHHHHHHHhhcc----
Confidence 00000 0011 12344556555555555556678999999998843 457788888885
Q ss_pred CCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCCccccHHH
Q 007255 157 KTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEA 235 (611)
Q Consensus 157 ~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~~~~dl~~ 235 (611)
+++.+++|.+|+.+..+.+++++ |+. .+.|.+++.++..++++..+...+... +..+..++..+.| +.+++.+
T Consensus 146 --pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~als 219 (563)
T PRK06647 146 --PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYT 219 (563)
T ss_pred --CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 33457777777888899999998 885 789999999999999988876555442 2346777776665 4555556
Q ss_pred HHHHHH
Q 007255 236 LCREAT 241 (611)
Q Consensus 236 l~~~a~ 241 (611)
+++.+.
T Consensus 220 lLdkli 225 (563)
T PRK06647 220 LFDQVV 225 (563)
T ss_pred HHHHHH
Confidence 555543
No 219
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=8.1e-13 Score=136.36 Aligned_cols=186 Identities=18% Similarity=0.088 Sum_probs=130.4
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEe----------
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFS---------- 354 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~---------- 354 (611)
.+.++++|+|++.+++.|.+.+.. .+.++++||+||+|+||+++|.++|+.+.|.--.
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 456789999999999999998874 3567889999999999999999999988442100
Q ss_pred ----------------ecchhhccccc---cc--------hHHHHHHHHHHHH----hcCCcEEEEcccccccccCCCCC
Q 007255 355 ----------------LSGAELYSMYV---GE--------SEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSS 403 (611)
Q Consensus 355 ----------------~~~~~~~~~~~---g~--------~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~ 403 (611)
-+.+++..-.. +. .-..++.+.+.+. ...+.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 00011110000 10 1223444444332 345679999999977
Q ss_pred CCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcc
Q 007255 404 STSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDV 483 (611)
Q Consensus 404 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~ 483 (611)
+....+.||+.++ ++++++++|.+|+.++.+.+.+.+ |+. .+.|++|+.++..+++..... ...+.
T Consensus 154 ------~~~aanaLLK~LE--epp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~---~~~~~ 219 (365)
T PRK07471 154 ------NANAANALLKVLE--EPPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGP---DLPDD 219 (365)
T ss_pred ------CHHHHHHHHHHHh--cCCCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhcc---cCCHH
Confidence 3567899999998 577788888899999999888877 887 899999999999999885431 11222
Q ss_pred cHHHHHHhCCCCCHHHHHHHHH
Q 007255 484 DLRSIAEETELFTGAELEGLCR 505 (611)
Q Consensus 484 ~~~~la~~~~g~s~~~i~~~~~ 505 (611)
.+..++..+.| ++.....++.
T Consensus 220 ~~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 220 PRAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred HHHHHHHHcCC-CHHHHHHHhc
Confidence 23567777777 5655555554
No 220
>PRK08727 hypothetical protein; Validated
Probab=99.51 E-value=7.9e-13 Score=128.94 Aligned_cols=179 Identities=22% Similarity=0.214 Sum_probs=113.5
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCC
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGG 401 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~ 401 (611)
..++|+||+|||||+++.+++.++ +....+++..++.. .+...++.. ...++|+|||++.+.++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCCh--
Confidence 459999999999999999998775 55666666554332 233334333 345699999999885432
Q ss_pred CCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCccc---chhccCCCCc--cceeecCCCCHHHHHHHHHHHhcC
Q 007255 402 SSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAI---DAALMRPGRF--DLVLYVPPPDLEARHEILRVHTRN 476 (611)
Q Consensus 402 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l---d~al~r~gRf--~~~i~~~~p~~~~r~~il~~~~~~ 476 (611)
.....+-.+++.+ ...+..+++.+...|..+ ++++.+ || ...+.++.|+.+++.+|++.....
T Consensus 110 -------~~~~~lf~l~n~~---~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 -------EDEVALFDFHNRA---RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred -------HHHHHHHHHHHHH---HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 1112222333333 233333444444566654 688887 86 468899999999999999976544
Q ss_pred CCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHh
Q 007255 477 MKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKD 531 (611)
Q Consensus 477 ~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~ 531 (611)
..+. ++..++.|++.+.| +.+.+.+++......+... .++++...+..++.
T Consensus 178 ~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~---~~~it~~~~~~~l~ 229 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA---KRRVTVPFLRRVLE 229 (233)
T ss_pred cCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHh
Confidence 3333 34457889998876 5555555566554433332 34577666666553
No 221
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=7.5e-13 Score=144.37 Aligned_cols=196 Identities=19% Similarity=0.213 Sum_probs=139.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEc--------
Q 007255 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVIS-------- 85 (611)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~-------- 85 (611)
....|++|+|++.+++.|..++.. -+.+..+||+||+|+|||++++.+|+.+++.....+
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 346789999999999999998753 134678999999999999999999999876422111
Q ss_pred -----cc--------cccccc--ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHH
Q 007255 86 -----PH--------SVHKAH--VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM 150 (611)
Q Consensus 86 -----~~--------~~~~~~--~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l 150 (611)
|. ++.... .......++.+.+.+...+...+..|++|||+|.|.. ...+.|+..+
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~----------~a~naLLKtL 156 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST----------AAFNALLKTL 156 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH----------HHHHHHHHHH
Confidence 00 010000 0112345677777666555566778999999998843 4578888888
Q ss_pred hcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCc
Q 007255 151 DSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYV 229 (611)
Q Consensus 151 ~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~ 229 (611)
++. ++++.+|.+|+..+.+.+.+++ |+. .+.|..++.++...++...+...+..-+ ..+..++..+.| +
T Consensus 157 EeP------p~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-d 226 (598)
T PRK09111 157 EEP------PPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-S 226 (598)
T ss_pred HhC------CCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 863 3356777777888888899988 874 8999999999999999988876654433 346777777765 4
Q ss_pred cccHHHHHHHHH
Q 007255 230 GADLEALCREAT 241 (611)
Q Consensus 230 ~~dl~~l~~~a~ 241 (611)
.+++.++++.+.
T Consensus 227 lr~al~~Ldkli 238 (598)
T PRK09111 227 VRDGLSLLDQAI 238 (598)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 222
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.51 E-value=6.6e-13 Score=149.58 Aligned_cols=206 Identities=21% Similarity=0.258 Sum_probs=135.6
Q ss_pred ccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc--------
Q 007255 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK-------- 91 (611)
Q Consensus 20 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~-------- 91 (611)
+..|++++|+.+.+++...... +......++|+||||+|||++++.+|+.++.+++.++.+...+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 4899999999999887643221 1123457999999999999999999999999999888665432
Q ss_pred -ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCC---------CCCCCCC
Q 007255 92 -AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK---------PSKTSVP 161 (611)
Q Consensus 92 -~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~~ 161 (611)
.+.|.....+...+..+. . ...|++|||+|.+.+...+ .....|+..+|... .......
T Consensus 396 ~~~~g~~~G~~~~~l~~~~----~-~~~villDEidk~~~~~~g------~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVG----V-KNPLFLLDEIDKMSSDMRG------DPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred hccCCCCCcHHHHHHHhcC----C-CCCEEEEEChhhcccccCC------CHHHHHHHHhccccEEEEecccccccccCC
Confidence 233333333333333322 1 2348999999999764321 23567888877421 1111235
Q ss_pred cEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcC-----CCCCC------cccHHHHHHhc-cCCc
Q 007255 162 HVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK-----VPLDA------NVDLEAIATSC-NGYV 229 (611)
Q Consensus 162 ~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~-----~~~~~------~~~~~~la~~~-~g~~ 229 (611)
++++|+|+|.. .++++|++ ||. .|.++.++.++..+|.+.++.. ..... +.-+..++..+ ..+-
T Consensus 465 ~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 465 DVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred ceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 78999999987 59999998 995 8999999999999999887731 11111 11144554432 2233
Q ss_pred cccHHHHHHHHHHHHhhh
Q 007255 230 GADLEALCREATMSAVKR 247 (611)
Q Consensus 230 ~~dl~~l~~~a~~~a~~r 247 (611)
.|.++..+...+...+.+
T Consensus 541 aR~LeR~I~~i~r~~l~~ 558 (784)
T PRK10787 541 VRSLEREISKLCRKAVKQ 558 (784)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 466766666655554443
No 223
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.51 E-value=9.4e-13 Score=139.72 Aligned_cols=223 Identities=21% Similarity=0.249 Sum_probs=146.5
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-----CCcEEeecchhhcc
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYS 362 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~~~~~~~ 362 (611)
..+.+.|.++..+.|...+...+. + ..+.+++++||||||||++++.+++++ +..++.+++....+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 446788888888888777753221 1 234568999999999999999999887 46788887754321
Q ss_pred ----------ccc-------c-chHHHHHHHHHHHHh-cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcC
Q 007255 363 ----------MYV-------G-ESEALLRNTFQRARL-AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (611)
Q Consensus 363 ----------~~~-------g-~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 423 (611)
... + .....+..+.+.... ..+.||+|||+|.+.... ....+..|+..++.
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~~ 168 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHEE 168 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhhc
Confidence 111 1 123334444444433 345799999999986211 12456667666654
Q ss_pred CCCCCCeEEEEecCCCc---ccchhccCCCCcc-ceeecCCCCHHHHHHHHHHHhcCC---CCCCcccHHHHHHhCCCC-
Q 007255 424 LEQAKGILVLAATNRPH---AIDAALMRPGRFD-LVLYVPPPDLEARHEILRVHTRNM---KVGDDVDLRSIAEETELF- 495 (611)
Q Consensus 424 ~~~~~~~~vI~~tn~~~---~ld~al~r~gRf~-~~i~~~~p~~~~r~~il~~~~~~~---~~~~~~~~~~la~~~~g~- 495 (611)
.. ..++.+|+++|.++ .+++.+.+ ||. ..|.|++++.++..+|++..++.. ...++..++.+++.+.+.
T Consensus 169 ~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 169 YP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred cC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 32 23788888888765 46676665 563 578999999999999999776432 122344466777766332
Q ss_pred -CHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Q 007255 496 -TGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSLK 534 (611)
Q Consensus 496 -s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~~ 534 (611)
..+.+..+|..|...|..+. ...|+.+|+..++..+.
T Consensus 246 Gd~r~a~~ll~~a~~~a~~~~--~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 246 GDARVAIDLLRRAGLIAEREG--SRKVTEEDVRKAYEKSE 283 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHH
Confidence 34555677777777776543 35688888888887653
No 224
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=9.5e-13 Score=135.11 Aligned_cols=191 Identities=15% Similarity=0.101 Sum_probs=132.8
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-------EEee--
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS-------FFSL-- 355 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~-------~~~~-- 355 (611)
.+..+++++|++.+.+.|...+.. .+.++++||+||+|+|||++|+.+|+.+.+. ....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 456789999999999999999874 3556789999999999999999999998662 1000
Q ss_pred --cc-----------hhhc---ccc--c------cchHHHHHHHHHHHH----hcCCcEEEEcccccccccCCCCCCCCc
Q 007255 356 --SG-----------AELY---SMY--V------GESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSI 407 (611)
Q Consensus 356 --~~-----------~~~~---~~~--~------g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~ 407 (611)
.+ +++. ... . .-+...++.+.+... .....|++|||+|.+
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l------------ 153 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM------------ 153 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc------------
Confidence 00 0110 000 0 001233444333322 233459999999987
Q ss_pred chhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHH
Q 007255 408 TVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRS 487 (611)
Q Consensus 408 ~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~ 487 (611)
+....+.||+.|+ +++.+.++|..|+.|+.+.+.+++ |+. .+.|++|+.++..++++....... .++..+..
T Consensus 154 --~~~aanaLLk~LE--Epp~~~~fiLit~~~~~llptIrS--Rc~-~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~ 225 (351)
T PRK09112 154 --NRNAANAILKTLE--EPPARALFILISHSSGRLLPTIRS--RCQ-PISLKPLDDDELKKALSHLGSSQG-SDGEITEA 225 (351)
T ss_pred --CHHHHHHHHHHHh--cCCCCceEEEEECChhhccHHHHh--hcc-EEEecCCCHHHHHHHHHHhhcccC-CCHHHHHH
Confidence 3556789999998 567778888888999999899887 885 999999999999999986432222 22334677
Q ss_pred HHHhCCCCCHHHHHHHHHHHH
Q 007255 488 IAEETELFTGAELEGLCREAG 508 (611)
Q Consensus 488 la~~~~g~s~~~i~~~~~~a~ 508 (611)
+++.+.| +++....++....
T Consensus 226 i~~~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 226 LLQRSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HHHHcCC-CHHHHHHHHhcCc
Confidence 8888887 6666666665443
No 225
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.50 E-value=1.5e-12 Score=136.62 Aligned_cols=221 Identities=21% Similarity=0.261 Sum_probs=134.6
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEccccc
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG---------AHLTVISPHSV 89 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~---------~~~~~v~~~~~ 89 (611)
++++|.++.++.|...+...+. | ..+.+++++||||||||++++.+++++. ..++++++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 5799999999999998864221 1 2456899999999999999999998763 45777787543
Q ss_pred cccc-------------------cc-chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHH
Q 007255 90 HKAH-------------------VG-ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (611)
Q Consensus 90 ~~~~-------------------~~-~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~ 149 (611)
.... .+ .....+..++.... ...++.||+|||+|.+.... ..++..++.+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlvIDE~d~L~~~~-------~~~L~~l~~~ 155 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELN---ERGDSLIIVLDEIDYLVGDD-------DDLLYQLSRA 155 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH---hcCCeEEEEECchhhhccCC-------cHHHHhHhcc
Confidence 2110 00 01112223332221 12457899999999997321 1234444443
Q ss_pred HhcCCCCCCCCCcEEEEEeecCcc---cccHHhhccCCcc-eEEEccCCCHHHHHHHHHHhhcCC-C--CCCcccHHHHH
Q 007255 150 MDSNKPSKTSVPHVVVVASTNRVD---AIDPALRRSGRFD-AEVEVTVPTAEERFEILKLYTKKV-P--LDANVDLEAIA 222 (611)
Q Consensus 150 l~~~~~~~~~~~~v~ii~ttn~~~---~l~~~l~~~~Rf~-~~i~~~~p~~~~r~~Il~~~~~~~-~--~~~~~~~~~la 222 (611)
.+... ....++.+|+++|.++ .+++++.+ ||. ..+.|++|+.+++.+|++..+... . .-.+..++.++
T Consensus 156 ~~~~~---~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 156 RSNGD---LDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCA 230 (365)
T ss_pred ccccC---CCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Confidence 22111 1223688889998875 57888887 774 579999999999999999887521 1 11121233333
Q ss_pred ---HhccCCccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhcc
Q 007255 223 ---TSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVV 272 (611)
Q Consensus 223 ---~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i 272 (611)
..+.|.. +.+..+++.|...+..+.. ..++.+++..+....
T Consensus 231 ~~~~~~~Gd~-R~al~~l~~a~~~a~~~~~--------~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 231 ALAAQEHGDA-RKAIDLLRVAGEIAEREGA--------ERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHhcCCH-HHHHHHHHHHHHHHHHcCC--------CCCCHHHHHHHHHHH
Confidence 3334443 3344566666655544321 246677776655543
No 226
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=9.1e-13 Score=134.80 Aligned_cols=174 Identities=13% Similarity=0.174 Sum_probs=124.4
Q ss_pred cccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc--cc
Q 007255 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS--MY 364 (611)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~--~~ 364 (611)
++|++|+|++.+++.+...+.. .+.++.+||+||+|+|||++|+++|..+.|....-+.+++.. .+
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 4689999999999999998863 355678999999999999999999998754321111111110 00
Q ss_pred ccc--hHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 007255 365 VGE--SEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNR 438 (611)
Q Consensus 365 ~g~--~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 438 (611)
.|. .-..++.+.+.+.. ....|++||++|.+ +....+.||+.|+ ++++++++|.+|+.
T Consensus 69 ~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m--------------~~~a~naLLK~LE--epp~~t~~il~~~~ 132 (313)
T PRK05564 69 NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM--------------TEQAQNAFLKTIE--EPPKGVFIILLCEN 132 (313)
T ss_pred cCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc--------------CHHHHHHHHHHhc--CCCCCeEEEEEeCC
Confidence 111 22345555554332 23359999999877 3557899999999 67888888888899
Q ss_pred CcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCC
Q 007255 439 PHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETEL 494 (611)
Q Consensus 439 ~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g 494 (611)
|+.+-+.+.+ |+. .+.|+.|+.++....+.....+ .++..+..++..+.|
T Consensus 133 ~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g 182 (313)
T PRK05564 133 LEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDG 182 (313)
T ss_pred hHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCC
Confidence 9999999988 886 9999999999988877754432 123446677777776
No 227
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=8.9e-13 Score=133.51 Aligned_cols=184 Identities=11% Similarity=0.111 Sum_probs=130.6
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcE----------Eeecc
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF----------FSLSG 357 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~----------~~~~~ 357 (611)
.|++|+|++.+++.+...+.. .+.++++||+||+|+||+++|.++|+.+.+.- ...+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 588999999999999999874 25568999999999999999999999874331 11222
Q ss_pred hhhcccc-----ccc--------------------hHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcc
Q 007255 358 AELYSMY-----VGE--------------------SEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSIT 408 (611)
Q Consensus 358 ~~~~~~~-----~g~--------------------~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~ 408 (611)
+|+.--+ .|. .-..++.+.+.+.. ....|++||++|.+
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------------- 136 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------------- 136 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-------------
Confidence 2222000 011 11235555444432 23459999999877
Q ss_pred hhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHH
Q 007255 409 VGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSI 488 (611)
Q Consensus 409 ~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 488 (611)
+....|.||+.|+ +++ +.++|.+|+.|+.+-|.+++ |+. .+.|++|+.++..+++........ .+.+...+
T Consensus 137 -~~~aaNaLLK~LE--EPp-~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l 207 (314)
T PRK07399 137 -NEAAANALLKTLE--EPG-NGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEI--LNINFPEL 207 (314)
T ss_pred -CHHHHHHHHHHHh--CCC-CCeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhcccc--chhHHHHH
Confidence 3567899999998 455 66788889999999999998 887 899999999999999985532111 12235788
Q ss_pred HHhCCCCCHHHHHHHHHH
Q 007255 489 AEETELFTGAELEGLCRE 506 (611)
Q Consensus 489 a~~~~g~s~~~i~~~~~~ 506 (611)
+..+.| +++.+..+++.
T Consensus 208 ~~~a~G-s~~~al~~l~~ 224 (314)
T PRK07399 208 LALAQG-SPGAAIANIEQ 224 (314)
T ss_pred HHHcCC-CHHHHHHHHHH
Confidence 888888 67666666553
No 228
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.50 E-value=5.7e-13 Score=136.93 Aligned_cols=155 Identities=26% Similarity=0.360 Sum_probs=111.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~ 95 (611)
+.|++++|++++++.+..++.. -..|+.+||+||||+|||+++++++++++..++.+++++ . . ..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~-~-~~ 82 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C-R-ID 82 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c-c-HH
Confidence 7899999999999999988742 124566777999999999999999999998898888876 1 1 11
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccc
Q 007255 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (611)
Q Consensus 96 ~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l 175 (611)
.....+... .........+.+++|||+|.+... .....+...++... .++.+|.+||.++.+
T Consensus 83 ~i~~~l~~~---~~~~~~~~~~~vliiDe~d~l~~~---------~~~~~L~~~le~~~------~~~~~Ilt~n~~~~l 144 (316)
T PHA02544 83 FVRNRLTRF---ASTVSLTGGGKVIIIDEFDRLGLA---------DAQRHLRSFMEAYS------KNCSFIITANNKNGI 144 (316)
T ss_pred HHHHHHHHH---HHhhcccCCCeEEEEECcccccCH---------HHHHHHHHHHHhcC------CCceEEEEcCChhhc
Confidence 111112211 111111235789999999987321 23455666666532 246788899999999
Q ss_pred cHHhhccCCcceEEEccCCCHHHHHHHHHHh
Q 007255 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLY 206 (611)
Q Consensus 176 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~ 206 (611)
.+++++ ||. .+.++.|+.+++..+++.+
T Consensus 145 ~~~l~s--R~~-~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 145 IEPLRS--RCR-VIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred hHHHHh--hce-EEEeCCCCHHHHHHHHHHH
Confidence 999998 885 7899999999998887654
No 229
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.1e-12 Score=137.60 Aligned_cols=181 Identities=20% Similarity=0.251 Sum_probs=125.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccc----c-
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV----H- 90 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~----~- 90 (611)
..|++++|++.+++.+.+.+.. -..+.++||+||||+|||++++++++.+...........+ .
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~ 81 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIEN------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE 81 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE
Confidence 6789999999999999988754 1345789999999999999999999998653211110000 0
Q ss_pred -cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 007255 91 -KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST 169 (611)
Q Consensus 91 -~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~tt 169 (611)
+.........++.+++.+...+..+.+.|++|||+|.+.. ..++.++..++.. +...++|.++
T Consensus 82 l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~----------~~~~~ll~~le~~------~~~~~~Il~~ 145 (367)
T PRK14970 82 LDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS----------AAFNAFLKTLEEP------PAHAIFILAT 145 (367)
T ss_pred eccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH----------HHHHHHHHHHhCC------CCceEEEEEe
Confidence 0011122345666676665544455677999999997743 3456777777652 2245666667
Q ss_pred cCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccC
Q 007255 170 NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNG 227 (611)
Q Consensus 170 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g 227 (611)
+....+.+++.+ |+. .+.+++|+.++...++...+...+.. .+..+..++..+.|
T Consensus 146 ~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 146 TEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred CCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 777889999988 774 78999999999999998877766543 23346777776554
No 230
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.50 E-value=1.8e-13 Score=144.28 Aligned_cols=198 Identities=20% Similarity=0.257 Sum_probs=151.8
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE-------EE-c
Q 007255 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLT-------VI-S 85 (611)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~-------~v-~ 85 (611)
+.+.|++++|++.+++.|..++.. -+.....||+||-|||||+++|.+|+.+++.-- .+ .
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 347789999999999999999865 234578999999999999999999999976520 00 1
Q ss_pred cccccc----------ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCC
Q 007255 86 PHSVHK----------AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP 155 (611)
Q Consensus 86 ~~~~~~----------~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~ 155 (611)
|..+.. .-.......++.+.+.+.-.+..++.-|++|||+|.|.. ...+.|+..+++
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~----------~afNALLKTLEE--- 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK----------QAFNALLKTLEE--- 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH----------HHHHHHhccccc---
Confidence 111111 111223456778888887777778888999999998844 567889998887
Q ss_pred CCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCccc-HHHHHHhccCCccccHH
Q 007255 156 SKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVGADLE 234 (611)
Q Consensus 156 ~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-~~~la~~~~g~~~~dl~ 234 (611)
++.+|.+|.+|+.++.+++.+++ |+. .+.|...+.++....+...+.+..+..+.+ +..++...+| +.||..
T Consensus 146 ---PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDal 218 (515)
T COG2812 146 ---PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDAL 218 (515)
T ss_pred ---CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHH
Confidence 56689999999999999999999 885 899999999999999999998877765544 5555665554 568888
Q ss_pred HHHHHHHHH
Q 007255 235 ALCREATMS 243 (611)
Q Consensus 235 ~l~~~a~~~ 243 (611)
.+.+.+...
T Consensus 219 slLDq~i~~ 227 (515)
T COG2812 219 SLLDQAIAF 227 (515)
T ss_pred HHHHHHHHc
Confidence 888877644
No 231
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.49 E-value=6.6e-13 Score=144.29 Aligned_cols=217 Identities=18% Similarity=0.200 Sum_probs=137.4
Q ss_pred cccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEeecch
Q 007255 289 WEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSLSGA 358 (611)
Q Consensus 289 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~~~~~ 358 (611)
-+.|.|.++-.+.|..++...+. +..+...++++|+||||||++++.+..++ .+.++.+++.
T Consensus 754 PD~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 35677888877777777664332 22333345699999999999999998776 2567888885
Q ss_pred hhcccc----------------cc-chHHHHHHHHHHHHh--cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHH
Q 007255 359 ELYSMY----------------VG-ESEALLRNTFQRARL--AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLT 419 (611)
Q Consensus 359 ~~~~~~----------------~g-~~~~~~~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 419 (611)
.+...+ .| .+...+..+|..... ....||+|||||.|..+ ...++-.|+.
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR 894 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFD 894 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHHH
Confidence 433221 11 123455666665422 23469999999999532 1234444444
Q ss_pred HhcCCCCCCCeEEEEecCC---CcccchhccCCCCccc-eeecCCCCHHHHHHHHHHHhcCC-CCCCcccHHHHHHhCCC
Q 007255 420 EMDGLEQAKGILVLAATNR---PHAIDAALMRPGRFDL-VLYVPPPDLEARHEILRVHTRNM-KVGDDVDLRSIAEETEL 494 (611)
Q Consensus 420 ~l~~~~~~~~~~vI~~tn~---~~~ld~al~r~gRf~~-~i~~~~p~~~~r~~il~~~~~~~-~~~~~~~~~~la~~~~g 494 (611)
... ....+++|||++|. ++.+++.+.+ ||.. .|.|++++.+++.+||+..+... ...++..++.+|+....
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 332 24567999999986 5567888877 6653 58889999999999999777643 23344446667663332
Q ss_pred C--CHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Q 007255 495 F--TGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSL 533 (611)
Q Consensus 495 ~--s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~ 533 (611)
. ..+.+-.+|+.|+..+ ....|+.+|+..|+..+
T Consensus 971 ~SGDARKALDILRrAgEik-----egskVT~eHVrkAleei 1006 (1164)
T PTZ00112 971 VSGDIRKALQICRKAFENK-----RGQKIVPRDITEATNQL 1006 (1164)
T ss_pred cCCHHHHHHHHHHHHHhhc-----CCCccCHHHHHHHHHHH
Confidence 1 3344444555555431 22357777777777554
No 232
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.49 E-value=2.8e-13 Score=130.48 Aligned_cols=199 Identities=22% Similarity=0.276 Sum_probs=124.9
Q ss_pred CCccccccc-c--hhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-----CCcEEeec
Q 007255 285 PKVTWEDIG-G--LRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLS 356 (611)
Q Consensus 285 ~~~~~~~i~-g--~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~ 356 (611)
|+.+|+..+ | .+.+.......... .......++||||+|+|||+|.+|+++++ +..+++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~-----------~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAEN-----------PGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHS-----------TTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhc-----------CCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 456777764 4 33444444444442 11223458999999999999999999875 67789999
Q ss_pred chhhccccccchHH-HHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEe
Q 007255 357 GAELYSMYVGESEA-LLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAA 435 (611)
Q Consensus 357 ~~~~~~~~~g~~~~-~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~ 435 (611)
+.++...+...... .+..+.+.. ...++|+||+++.+.++ ......|...++.+...++.+||.+
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~------------~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGK------------QRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTH------------HHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCc------------hHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 88887654333211 122222222 35569999999998432 2344555555555556677777777
Q ss_pred cCCCccc---chhccCCCCcc--ceeecCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007255 436 TNRPHAI---DAALMRPGRFD--LVLYVPPPDLEARHEILRVHTRNMKVGDD-VDLRSIAEETELFTGAELEGLCREAGI 509 (611)
Q Consensus 436 tn~~~~l---d~al~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~s~~~i~~~~~~a~~ 509 (611)
...|..+ ++.+.+ ||. ..+.+..|+.++|.+|++......++.-+ .-++.|+....+ +.+++..++.....
T Consensus 138 ~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp SS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred CCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 7777754 566666 776 58889999999999999987766655533 346778888775 78888888876554
Q ss_pred HH
Q 007255 510 VA 511 (611)
Q Consensus 510 ~a 511 (611)
.+
T Consensus 215 ~~ 216 (219)
T PF00308_consen 215 YA 216 (219)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 233
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.49 E-value=1.5e-12 Score=133.42 Aligned_cols=205 Identities=22% Similarity=0.307 Sum_probs=148.1
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHh-----CCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGA 397 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~ 397 (611)
+.+.++||||.|+|||+|++|++++. +..+++++.+++...++......-..-|+.-. +-++++|||++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 44569999999999999999999988 45688888888877665554433334455554 556999999999975
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCccc---chhccCCCCcc--ceeecCCCCHHHHHHHHHH
Q 007255 398 KRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAI---DAALMRPGRFD--LVLYVPPPDLEARHEILRV 472 (611)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l---d~al~r~gRf~--~~i~~~~p~~~~r~~il~~ 472 (611)
+. +...+|...+..+...++.+++.+...|.++ ++.|.+ ||. ..+.+.+|+.+.|..|++.
T Consensus 190 k~------------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 190 KE------------RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred Ch------------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHH
Confidence 52 2234444444444566667887777778865 467777 876 7888999999999999998
Q ss_pred HhcCCCCCC-cccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCCC---CCHHHHHHHHH
Q 007255 473 HTRNMKVGD-DVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSLKPA---LTKEEIDSYSS 547 (611)
Q Consensus 473 ~~~~~~~~~-~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~~~~---~~~~~~~~~~~ 547 (611)
.....++.- +.-+..+|..... +.+++..++......+.... +.||.....+++..+... ++.+.|.+...
T Consensus 256 ka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~---~~iTi~~v~e~L~~~~~~~~~itie~I~~~Va 330 (408)
T COG0593 256 KAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTK---RAITIDLVKEILKDLLRAGEKITIEDIQKIVA 330 (408)
T ss_pred HHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcC---ccCcHHHHHHHHHHhhcccccCCHHHHHHHHH
Confidence 665555543 3446778877665 77899998888877776554 578888888888766433 67777655443
No 234
>PRK06620 hypothetical protein; Validated
Probab=99.49 E-value=1.3e-12 Score=125.26 Aligned_cols=194 Identities=14% Similarity=0.145 Sum_probs=124.2
Q ss_pred CCccccccc-c--hhHHHHHHHHHhhccCCChhHHhhcCCCC-CCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhh
Q 007255 285 PKVTWEDIG-G--LRDLKKKLQQAVEWPIKHSTAFSRLGISP-VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (611)
Q Consensus 285 ~~~~~~~i~-g--~~~~k~~l~~~~~~~~~~~~~~~~~~~~~-~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~ 360 (611)
+..+|++++ | .+.+...++++... ++..+ .+.++||||||||||++++++++..+..++. ....
T Consensus 11 ~~~tfd~Fvvg~~N~~a~~~~~~~~~~----------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 11 SKYHPDEFIVSSSNDQAYNIIKNWQCG----------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCchhhEecccHHHHHHHHHHHHHc----------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 445677754 2 33455555554431 12233 2679999999999999999999888754322 1100
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCc
Q 007255 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPH 440 (611)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 440 (611)
....+ ...++++|||||.+- ...+-.+++.+ ...++.++|+++..|.
T Consensus 79 -----------~~~~~-----~~~d~lliDdi~~~~--------------~~~lf~l~N~~---~e~g~~ilits~~~p~ 125 (214)
T PRK06620 79 -----------NEEIL-----EKYNAFIIEDIENWQ--------------EPALLHIFNII---NEKQKYLLLTSSDKSR 125 (214)
T ss_pred -----------chhHH-----hcCCEEEEeccccch--------------HHHHHHHHHHH---HhcCCEEEEEcCCCcc
Confidence 00111 234699999999541 12233444444 3556788888887777
Q ss_pred c--cchhccCCCCcc--ceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Q 007255 441 A--IDAALMRPGRFD--LVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALRED 515 (611)
Q Consensus 441 ~--ld~al~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~ 515 (611)
. + +++++ |+. .++.+..|+.+++..+++......++. ++.-++.|+....| +.+.+.+++......+..
T Consensus 126 ~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~-- 199 (214)
T PRK06620 126 NFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALI-- 199 (214)
T ss_pred ccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH--
Confidence 5 4 67776 876 578999999999999998776654443 44557889998887 788888888765433332
Q ss_pred cccccccHHHHHHHH
Q 007255 516 ISATAVRNRHFQTVK 530 (611)
Q Consensus 516 ~~~~~i~~~~~~~~l 530 (611)
..++|+...+..++
T Consensus 200 -~~~~it~~~~~~~l 213 (214)
T PRK06620 200 -SKRKITISLVKEVL 213 (214)
T ss_pred -cCCCCCHHHHHHHh
Confidence 23557766665554
No 235
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=9.9e-13 Score=138.55 Aligned_cols=194 Identities=15% Similarity=0.206 Sum_probs=128.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE----------
Q 007255 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV---------- 83 (611)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~---------- 83 (611)
....|++|+|++.+++.|..++.. -+.+..+||+||||+|||++|+.+|+.+.+.-..
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 345679999999999999887753 1345679999999999999999999999763100
Q ss_pred Eccc--------------ccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHH
Q 007255 84 ISPH--------------SVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLF 147 (611)
Q Consensus 84 v~~~--------------~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll 147 (611)
-.|. ++. ..........++.+.+.....+..+...|++|||+|.+.. ..++.|+
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~----------~~~~~LL 148 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI----------AAFNAFL 148 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----------HHHHHHH
Confidence 0000 000 0000011344555555554444455667999999998853 3466788
Q ss_pred HHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhcc
Q 007255 148 TLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCN 226 (611)
Q Consensus 148 ~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~ 226 (611)
..++.. ++.+++|.+|+....+.+.+++ |+. .+.|++++.++..+.++..++..+.. .+..+..++..+.
T Consensus 149 k~LEep------~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~ 219 (397)
T PRK14955 149 KTLEEP------PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQ 219 (397)
T ss_pred HHHhcC------CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 888752 2245666666777888899988 775 78999999999999998887655433 2234677777666
Q ss_pred CCccccHHHHHHH
Q 007255 227 GYVGADLEALCRE 239 (611)
Q Consensus 227 g~~~~dl~~l~~~ 239 (611)
|. .+.+.+.++.
T Consensus 220 g~-lr~a~~~L~k 231 (397)
T PRK14955 220 GS-MRDAQSILDQ 231 (397)
T ss_pred CC-HHHHHHHHHH
Confidence 53 3333333333
No 236
>PRK05642 DNA replication initiation factor; Validated
Probab=99.48 E-value=7.7e-13 Score=129.04 Aligned_cols=179 Identities=18% Similarity=0.168 Sum_probs=122.6
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCC
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRG 400 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~ 400 (611)
.+.++||||+|||||+|++++++++ +..+++++..++.... ..+.+..+ ..++|+|||++.+.++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCCh-
Confidence 3578999999999999999999765 5678888887775421 22223332 23599999999874331
Q ss_pred CCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCccc---chhccCCCCcc--ceeecCCCCHHHHHHHHHHHhc
Q 007255 401 GSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAI---DAALMRPGRFD--LVLYVPPPDLEARHEILRVHTR 475 (611)
Q Consensus 401 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l---d~al~r~gRf~--~~i~~~~p~~~~r~~il~~~~~ 475 (611)
.....|...++.....++.++|+++..|..+ .+.+.+ ||. ..+.+..|+.++|..+++....
T Consensus 114 -----------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 114 -----------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred -----------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 1223444444444456677888777777643 577777 884 6777899999999999995544
Q ss_pred CCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 007255 476 NMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 476 ~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
...+. ++.-++.|++..++ +.+.+..++......+... .++||..-+.+++
T Consensus 181 ~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~---~~~it~~~~~~~L 232 (234)
T PRK05642 181 RRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQA---QRKLTIPFLKETL 232 (234)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHc---CCcCCHHHHHHHh
Confidence 43332 34557889998887 8888888888665444332 3667776666554
No 237
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.7e-12 Score=142.53 Aligned_cols=191 Identities=21% Similarity=0.254 Sum_probs=134.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE----ccc----
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI----SPH---- 87 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v----~~~---- 87 (611)
..|++++|++.+++.|..++.. .+.+.++||+||+|+|||++|+++|+.+++..... .|.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~ 80 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALIS------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCEL 80 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHH
Confidence 6789999999999999998754 12346899999999999999999999987631100 000
Q ss_pred ----------ccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCC
Q 007255 88 ----------SVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP 155 (611)
Q Consensus 88 ----------~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~ 155 (611)
++. ..........++++.+.+......+...|++|||+|.|.. ..++.|+..+++
T Consensus 81 C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~----------~a~naLLK~LEe--- 147 (620)
T PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST----------AAFNALLKTLEE--- 147 (620)
T ss_pred HHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH----------HHHHHHHHHHhc---
Confidence 010 1111233456777777766555456677999999998843 567889999986
Q ss_pred CCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCCccccHH
Q 007255 156 SKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLE 234 (611)
Q Consensus 156 ~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~~~~dl~ 234 (611)
.+..+++|++|+.++.+.+.+++ |+. .+.|..++.++....+...+...+..- ...+..++..+.|.. +++.
T Consensus 148 ---Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~l-r~A~ 220 (620)
T PRK14948 148 ---PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGL-RDAE 220 (620)
T ss_pred ---CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-HHHH
Confidence 33357777778888889999998 874 789999999998888877766544332 234777777776643 4444
Q ss_pred HHHH
Q 007255 235 ALCR 238 (611)
Q Consensus 235 ~l~~ 238 (611)
++++
T Consensus 221 ~lLe 224 (620)
T PRK14948 221 SLLD 224 (620)
T ss_pred HHHH
Confidence 4444
No 238
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.9e-12 Score=137.80 Aligned_cols=175 Identities=21% Similarity=0.283 Sum_probs=123.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~--------------- 80 (611)
..|++|+|++.+++.|...+.. -+.+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 6779999999999999988753 1345679999999999999999999988543
Q ss_pred ----------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHH
Q 007255 81 ----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM 150 (611)
Q Consensus 81 ----------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l 150 (611)
++.++... ......++.+.+........+...|++|||+|.+.. ..++.|+..+
T Consensus 82 ~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~----------~~~n~LLk~l 145 (451)
T PRK06305 82 KEISSGTSLDVLEIDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK----------EAFNSLLKTL 145 (451)
T ss_pred HHHhcCCCCceEEeeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH----------HHHHHHHHHh
Confidence 11111100 011233444333333333345678999999998853 4567888888
Q ss_pred hcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccC
Q 007255 151 DSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNG 227 (611)
Q Consensus 151 ~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g 227 (611)
+.. ++.+++|.+|+.+..+.+.+++ |+. .+.|+.++.++...++...++..+...+ ..+..++..++|
T Consensus 146 Eep------~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 146 EEP------PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred hcC------CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 863 2346777777888899999998 885 7999999999999999887766554322 346777776654
No 239
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.48 E-value=1.8e-12 Score=134.54 Aligned_cols=188 Identities=24% Similarity=0.323 Sum_probs=123.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEcccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG-----AHLTVISPHSVH 90 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~-----~~~~~v~~~~~~ 90 (611)
..|++++|++++++.|..++..+ ...+++|+||||||||++++++++++. .+++.++++++.
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 56799999999999998877431 224799999999999999999999884 346777776643
Q ss_pred cccc-------------cc-------hHHHHHHHHHHHHhh-hhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHH
Q 007255 91 KAHV-------------GE-------SEKALREAFSQASSH-ALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (611)
Q Consensus 91 ~~~~-------------~~-------~~~~l~~~f~~~~~~-~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~ 149 (611)
.... +. ....++.+....... +....+.+|+|||+|.+.. ..+..|...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~----------~~~~~L~~~ 148 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE----------DAQQALRRI 148 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH----------HHHHHHHHH
Confidence 2110 00 011222222222111 1123456999999998743 345567777
Q ss_pred HhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCC
Q 007255 150 MDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGY 228 (611)
Q Consensus 150 l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~ 228 (611)
++.... ...+|.+++.+..+.+.+++ |+ ..+.+++|+.+++..+++..+...+.. .+..++.++..+.
T Consensus 149 le~~~~------~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~-- 217 (337)
T PRK12402 149 MEQYSR------TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG-- 217 (337)
T ss_pred HHhccC------CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--
Confidence 775432 23455566666677788887 76 478999999999999999888766544 2334777777663
Q ss_pred ccccHHHHHHH
Q 007255 229 VGADLEALCRE 239 (611)
Q Consensus 229 ~~~dl~~l~~~ 239 (611)
+++..++..
T Consensus 218 --gdlr~l~~~ 226 (337)
T PRK12402 218 --GDLRKAILT 226 (337)
T ss_pred --CCHHHHHHH
Confidence 345444443
No 240
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.47 E-value=1.4e-12 Score=143.81 Aligned_cols=228 Identities=23% Similarity=0.344 Sum_probs=135.3
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEE
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVI 84 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v 84 (611)
...|++++|++..++.+.+.+.. ..+.+++|+||||||||++++.+++.. +.+++.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 36789999999999987655422 235689999999999999999998765 3468888
Q ss_pred cccccccc-------cccchHH----HHHHHHHHH------HhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHH
Q 007255 85 SPHSVHKA-------HVGESEK----ALREAFSQA------SSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLF 147 (611)
Q Consensus 85 ~~~~~~~~-------~~~~~~~----~l~~~f~~~------~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll 147 (611)
++..+... ..+.... ..+..+... ........+++|||||++.|.+ ..+..|+
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~----------~~Q~~Ll 286 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP----------LLQNKLL 286 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH----------HHHHHHH
Confidence 87765210 1111000 000001000 0000112357999999988754 5577777
Q ss_pred HHHhcCCC----------------------CCCCCCcEEEEEe-ecCcccccHHhhccCCcceEEEccCCCHHHHHHHHH
Q 007255 148 TLMDSNKP----------------------SKTSVPHVVVVAS-TNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILK 204 (611)
Q Consensus 148 ~~l~~~~~----------------------~~~~~~~v~ii~t-tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~ 204 (611)
..++.... ....+..+++|++ ++.++.+++++++ ||. .+.+++++.+++..|++
T Consensus 287 ~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~ 363 (615)
T TIGR02903 287 KVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVL 363 (615)
T ss_pred HHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHH
Confidence 77765320 0112234566654 5567889999998 886 78999999999999999
Q ss_pred HhhcCCCCCCccc-HHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHh
Q 007255 205 LYTKKVPLDANVD-LEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARS 270 (611)
Q Consensus 205 ~~~~~~~~~~~~~-~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~ 270 (611)
..+.......+.+ ++.++..+. .++...+.+..+...+..+............++.+|+..+..
T Consensus 364 ~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~ 428 (615)
T TIGR02903 364 NAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQ 428 (615)
T ss_pred HHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhC
Confidence 9887654332222 344444332 344444444444333222221001112234677788777654
No 241
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.47 E-value=3.6e-13 Score=123.93 Aligned_cols=186 Identities=20% Similarity=0.275 Sum_probs=130.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh-C----CcEEEEcccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-G----AHLTVISPHSVH 90 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l-~----~~~~~v~~~~~~ 90 (611)
..+.||+|+++.++.|..+... ..-.|+++.|||||||||-+.++|+++ | -.+.++++++-.
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc
Confidence 5689999999999999877533 133699999999999999999999987 3 235677777533
Q ss_pred cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 007255 91 KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (611)
Q Consensus 91 ~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn 170 (611)
.. +..+.-.+.|.+-+-....++..|+++||+|++.. ..++.|.+.|+-+..+ ..+..+||
T Consensus 91 GI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~----------gAQQAlRRtMEiyS~t------tRFalaCN 151 (333)
T KOG0991|consen 91 GI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA----------GAQQALRRTMEIYSNT------TRFALACN 151 (333)
T ss_pred cc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh----------HHHHHHHHHHHHHccc------chhhhhhc
Confidence 21 22334445666666555456677999999998854 5678888888876553 35778899
Q ss_pred CcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCCccccHHHH
Q 007255 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEAL 236 (611)
Q Consensus 171 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~~~~dl~~l 236 (611)
..+.+-+.+.+ |+. .+.+...+..+...-+....+...... +..++.+.-..+|-....+.++
T Consensus 152 ~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnL 215 (333)
T KOG0991|consen 152 QSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNL 215 (333)
T ss_pred chhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHH
Confidence 99999999998 885 667777777766655555544433332 2246777666666544444443
No 242
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.47 E-value=1.3e-12 Score=145.42 Aligned_cols=184 Identities=23% Similarity=0.333 Sum_probs=124.0
Q ss_pred ccccccCCcHHHHH---HHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccc
Q 007255 16 KAEEAIGGNRAAVE---ALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA 92 (611)
Q Consensus 16 ~~~~~i~G~~~~~~---~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~ 92 (611)
+.|++++|++..+. .|.+++.. ....+++|+||||||||++++++++.++..++.+++....
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~-- 89 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG-- 89 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh--
Confidence 78999999999985 45555432 1335899999999999999999999999988888865321
Q ss_pred cccchHHHHHHHHHHHHhhh-hcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 007255 93 HVGESEKALREAFSQASSHA-LSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (611)
Q Consensus 93 ~~~~~~~~l~~~f~~~~~~~-~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~ 171 (611)
...++..+..+.... ..++..+|||||+|.+.. ..+..|+..++. +.+++|++|+.
T Consensus 90 -----i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~----------~qQdaLL~~lE~--------g~IiLI~aTTe 146 (725)
T PRK13341 90 -----VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK----------AQQDALLPWVEN--------GTITLIGATTE 146 (725)
T ss_pred -----hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH----------HHHHHHHHHhcC--------ceEEEEEecCC
Confidence 112333333332111 123467999999998743 335667776654 14667766543
Q ss_pred --cccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcC-------CCCC-CcccHHHHHHhccCCccccHHHHHHHHH
Q 007255 172 --VDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK-------VPLD-ANVDLEAIATSCNGYVGADLEALCREAT 241 (611)
Q Consensus 172 --~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~-------~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~ 241 (611)
...+++++.+ |+ ..+.|++++.+++..+++..+.. .... .+..+..++..+.| ..+.+.++++.+.
T Consensus 147 np~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 147 NPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred ChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3578899998 76 47899999999999999987762 1222 22236777776644 3455555555544
No 243
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.47 E-value=7.1e-12 Score=133.02 Aligned_cols=224 Identities=24% Similarity=0.276 Sum_probs=138.2
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEcccccccc-
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKA- 92 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~~~~~- 92 (611)
+.++|.++..+.|...+...+. -..+.+++++||||||||++++.+++++ +..++++++......
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~---------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR---------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 5689999999999998854221 1245679999999999999999999887 466888887643210
Q ss_pred ---------ccc----chHHHHHHHHHHHHhhh-hcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCC
Q 007255 93 ---------HVG----ESEKALREAFSQASSHA-LSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKT 158 (611)
Q Consensus 93 ---------~~~----~~~~~l~~~f~~~~~~~-~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 158 (611)
..+ ........++....... ..+++.||+|||+|.+.... ....+..++..++....
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~------~~~~l~~l~~~~~~~~~--- 171 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE------GNDVLYSLLRAHEEYPG--- 171 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC------CchHHHHHHHhhhccCC---
Confidence 000 00001122222222111 12456899999999987211 11345666666554321
Q ss_pred CCCcEEEEEeecCcc---cccHHhhccCCcc-eEEEccCCCHHHHHHHHHHhhcCCC---CCCcccHHHHHHhccCCcc-
Q 007255 159 SVPHVVVVASTNRVD---AIDPALRRSGRFD-AEVEVTVPTAEERFEILKLYTKKVP---LDANVDLEAIATSCNGYVG- 230 (611)
Q Consensus 159 ~~~~v~ii~ttn~~~---~l~~~l~~~~Rf~-~~i~~~~p~~~~r~~Il~~~~~~~~---~~~~~~~~~la~~~~g~~~- 230 (611)
.++.+|+++|..+ .+++.+.+ ||. ..+.|++++.++..+|++..+.... .-.+..++.+++.+.+..|
T Consensus 172 --~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 172 --ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred --CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 1577888887753 57788877 553 5789999999999999998775321 1122335666666643222
Q ss_pred -ccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhcc
Q 007255 231 -ADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVV 272 (611)
Q Consensus 231 -~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i 272 (611)
+.+..++..|...+..+. ...++.+++..+...+
T Consensus 248 ~r~a~~ll~~a~~~a~~~~--------~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 248 ARVAIDLLRRAGLIAEREG--------SRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHHHHHcC--------CCCcCHHHHHHHHHHH
Confidence 333456666655554332 2246777777665543
No 244
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.46 E-value=3.8e-12 Score=136.68 Aligned_cols=171 Identities=23% Similarity=0.347 Sum_probs=109.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
.++++|+||||||||+|++++++++ +..++++++.++..............-|.... ....+|+|||+|.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~dlLiiDDi~~ 222 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-----RSVDVLLIDDIQF 222 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-----hcCCEEEEehhhh
Confidence 3679999999999999999999987 45678888877654332211111111122111 1356999999998
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccc---ccHHhhccCCcc--eEEEccCCCHHHHHHH
Q 007255 128 LCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA---IDPALRRSGRFD--AEVEVTVPTAEERFEI 202 (611)
Q Consensus 128 l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~---l~~~l~~~~Rf~--~~i~~~~p~~~~r~~I 202 (611)
+.... ..+..++..++...... ..++|++..+|.. +++++.+ ||. ..+.+.+|+.++|.+|
T Consensus 223 l~~~~--------~~~~~l~~~~n~l~~~~----~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 223 LAGKE--------RTQEEFFHTFNALHEAG----KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred hcCCH--------HHHHHHHHHHHHHHHCC----CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHH
Confidence 85432 23344555544332211 2355655555554 6799988 874 5799999999999999
Q ss_pred HHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHHHH
Q 007255 203 LKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMS 243 (611)
Q Consensus 203 l~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~ 243 (611)
++..+...+.. .+..++.++..+.| +.+.+..++......
T Consensus 289 l~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 289 LKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAY 329 (450)
T ss_pred HHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHH
Confidence 99988765443 23347777776654 455566665554433
No 245
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.46 E-value=5.2e-12 Score=137.44 Aligned_cols=181 Identities=20% Similarity=0.240 Sum_probs=117.6
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEcccc
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVISPHS 88 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~ 88 (611)
+.|.|.++.++.|..++...+. |..++..++++|+||||||++++.+++++ ...+++++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 6799999999999998865332 11233445799999999999999998776 14578888854
Q ss_pred ccccc--------------c--c-chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHh
Q 007255 89 VHKAH--------------V--G-ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (611)
Q Consensus 89 ~~~~~--------------~--~-~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 151 (611)
+.... + + .....+..+|...... .....||+|||||.|.... ..++..|+++..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~--~r~v~IIILDEID~L~kK~-------QDVLYnLFR~~~ 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKD--NRNVSILIIDEIDYLITKT-------QKVLFTLFDWPT 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcc--cccceEEEeehHhhhCccH-------HHHHHHHHHHhh
Confidence 32211 0 1 1223444555443211 1235699999999997531 133333444322
Q ss_pred cCCCCCCCCCcEEEEEeecC---cccccHHhhccCCcce-EEEccCCCHHHHHHHHHHhhcCCC-CCCcccHHHHHHh
Q 007255 152 SNKPSKTSVPHVVVVASTNR---VDAIDPALRRSGRFDA-EVEVTVPTAEERFEILKLYTKKVP-LDANVDLEAIATS 224 (611)
Q Consensus 152 ~~~~~~~~~~~v~ii~ttn~---~~~l~~~l~~~~Rf~~-~i~~~~p~~~~r~~Il~~~~~~~~-~~~~~~~~~la~~ 224 (611)
. ....+.+|+.+|. ++.+++++++ ||.. .+.|++|+.+++.+|++..+.... .-.+.-++.+|+.
T Consensus 898 ---~---s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArk 967 (1164)
T PTZ00112 898 ---K---INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARK 967 (1164)
T ss_pred ---c---cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 1 1236889999987 4577889988 6643 589999999999999999887542 1122235555553
No 246
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=4.4e-12 Score=138.57 Aligned_cols=183 Identities=15% Similarity=0.216 Sum_probs=127.3
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE----------E
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV----------I 84 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~----------v 84 (611)
...|++|+|++.+++.|...+.. -+.+..+||+||+|||||++|+.+|+.+++.-.. -
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 35679999999999999887743 1345679999999999999999999999763100 0
Q ss_pred ccc------cc------c-ccccc---chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHH
Q 007255 85 SPH------SV------H-KAHVG---ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFT 148 (611)
Q Consensus 85 ~~~------~~------~-~~~~~---~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~ 148 (611)
.|. .+ . ....+ .....++.+.+.....+..+...|++|||+|.|.. ..++.|+.
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~----------~a~naLLK 149 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST----------AAFNAFLK 149 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH----------HHHHHHHH
Confidence 000 00 0 00011 11345555555554444455677999999998843 44678899
Q ss_pred HHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccC
Q 007255 149 LMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNG 227 (611)
Q Consensus 149 ~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g 227 (611)
.++.- ++.+++|.+|+....+.+.+++ |+ ..+.|..++.++....+...+...+.. .+..+..++..++|
T Consensus 150 ~LEeP------p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 150 TLEEP------PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHhCC------CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 98873 2345666667777899999998 87 489999999999999888877655433 23347778887766
Q ss_pred C
Q 007255 228 Y 228 (611)
Q Consensus 228 ~ 228 (611)
.
T Consensus 221 d 221 (620)
T PRK14954 221 S 221 (620)
T ss_pred C
Confidence 3
No 247
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.42 E-value=4.4e-12 Score=126.03 Aligned_cols=132 Identities=23% Similarity=0.312 Sum_probs=93.2
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEeecc------hhhccccccchHHH-HHH-------------------HHHH
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSLSG------AELYSMYVGESEAL-LRN-------------------TFQR 378 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~------~~~~~~~~g~~~~~-~~~-------------------~~~~ 378 (611)
.++||+||||||||++|+++|..+|.+++.+++ +++.+.+.+..... ... .+-.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 569999999999999999999999999998865 34444443321111 110 0111
Q ss_pred HHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--------------CCCCeEEEEecCCCc----
Q 007255 379 ARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--------------QAKGILVLAATNRPH---- 440 (611)
Q Consensus 379 a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------------~~~~~~vI~~tn~~~---- 440 (611)
|. ..+.+++|||++.+ .....+.|+..|+.-. ....+.+|+|+|...
T Consensus 102 A~-~~g~~lllDEi~r~--------------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 102 AV-REGFTLVYDEFTRS--------------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HH-HcCCEEEEcchhhC--------------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 11 23459999999976 2456677777775311 223678999999763
Q ss_pred -ccchhccCCCCccceeecCCCCHHHHHHHHHHHh
Q 007255 441 -AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHT 474 (611)
Q Consensus 441 -~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~ 474 (611)
.+++++++ ||- .+.++.|+.++-.+|++.+.
T Consensus 167 ~~l~~aL~~--R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hcE-EEECCCCCHHHHHHHHHHhh
Confidence 56889998 985 89999999999999998654
No 248
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=4.1e-12 Score=129.34 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=112.4
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHhCCc------------------------EEeecchhhccccccchHHHHHHHHH
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEAS------------------------FFSLSGAELYSMYVGESEALLRNTFQ 377 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~ 377 (611)
+.++++||+||+|+|||++|+++|+.+.|. ++.+.+.+- + ..-.-..++.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHH
Confidence 557889999999999999999999998653 222222100 0 0012345666555
Q ss_pred HHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCcc
Q 007255 378 RARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFD 453 (611)
Q Consensus 378 ~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~ 453 (611)
.+.. ....|++||++|.+ +....|.||+.|+ ++++++++|.+|+.++.+.|.+++ |+.
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m--------------~~~aaNaLLK~LE--EPp~~~~fiL~t~~~~~ll~TI~S--Rc~ 158 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM--------------NRNAANALLKSLE--EPSGDTVLLLISHQPSRLLPTIKS--RCQ 158 (328)
T ss_pred HHhhccccCCCeEEEECChhhC--------------CHHHHHHHHHHHh--CCCCCeEEEEEECChhhCcHHHHh--hce
Confidence 5443 33459999999987 3567899999999 678899999999999999999998 998
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHH
Q 007255 454 LVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLC 504 (611)
Q Consensus 454 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~ 504 (611)
.+.|++|+.++..+.+..... ...+.+...++..+.| ++.....+.
T Consensus 159 -~~~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~G-sp~~A~~l~ 204 (328)
T PRK05707 159 -QQACPLPSNEESLQWLQQALP---ESDERERIELLTLAGG-SPLRALQLH 204 (328)
T ss_pred -eeeCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCC-CHHHHHHHH
Confidence 699999999988888874431 1233445667777777 455444443
No 249
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=7.7e-12 Score=137.94 Aligned_cols=192 Identities=21% Similarity=0.270 Sum_probs=129.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE---Eccc-----
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV---ISPH----- 87 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~---v~~~----- 87 (611)
..|++|+|++.+++.|..++.. -+.+..+||+||+|+|||++++.+|+.+++.... -.|.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c 80 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMC 80 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHH
Confidence 6789999999999999888753 1234568999999999999999999998642210 0000
Q ss_pred ---------ccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC
Q 007255 88 ---------SVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS 156 (611)
Q Consensus 88 ---------~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 156 (611)
++. +.........++.+.+.+..........|++|||+|.|.. ..++.|+..++...
T Consensus 81 ~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~----------~a~naLLk~LEepp-- 148 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST----------AAFNALLKTLEEPP-- 148 (585)
T ss_pred HHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH----------HHHHHHHHHHhcCC--
Confidence 000 0000112334555554444443445567999999998743 45677888888632
Q ss_pred CCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCccccHHH
Q 007255 157 KTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEA 235 (611)
Q Consensus 157 ~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~~~dl~~ 235 (611)
.++++|.+++..+.+.+.+++ |+. .+.|+.++..+...+++..+...+...+ ..+..++..+.| +.+++.+
T Consensus 149 ----~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~ 220 (585)
T PRK14950 149 ----PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAEN 220 (585)
T ss_pred ----CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 346677777777888899988 874 7899999999999999888766554322 346777777765 4444545
Q ss_pred HHHH
Q 007255 236 LCRE 239 (611)
Q Consensus 236 l~~~ 239 (611)
.++.
T Consensus 221 ~Lek 224 (585)
T PRK14950 221 LLQQ 224 (585)
T ss_pred HHHH
Confidence 4443
No 250
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.42 E-value=4.3e-12 Score=142.27 Aligned_cols=140 Identities=24% Similarity=0.339 Sum_probs=102.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccc--ccccc----chHH---HHHHHHHHHHhhhhcCCCeEEEE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH--KAHVG----ESEK---ALREAFSQASSHALSGKPSVVFI 122 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~--~~~~~----~~~~---~l~~~f~~~~~~~~~~~~~il~I 122 (611)
..-++|+.||+.+|||+.+.++|++.|..|+.++-++-. ..|.| .... --..++-+|.. ++-++++
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR-----~GyWIVL 961 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR-----RGYWIVL 961 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh-----cCcEEEe
Confidence 346899999999999999999999999999999876422 11111 1111 11223333322 3569999
Q ss_pred ccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC--------CCCCcEEEEEeecCcc------cccHHhhccCCcceE
Q 007255 123 DEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK--------TSVPHVVVVASTNRVD------AIDPALRRSGRFDAE 188 (611)
Q Consensus 123 Deid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--------~~~~~v~ii~ttn~~~------~l~~~l~~~~Rf~~~ 188 (611)
||++.. | ..++..|-+++|.++.-. .+.+++.+++|.|+|. .++.+++. ||. .
T Consensus 962 DELNLA-p---------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E 1028 (4600)
T COG5271 962 DELNLA-P---------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-E 1028 (4600)
T ss_pred eccccC-c---------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-h
Confidence 999643 3 267888889998754332 3567899999999875 67889987 995 8
Q ss_pred EEccCCCHHHHHHHHHHhhcC
Q 007255 189 VEVTVPTAEERFEILKLYTKK 209 (611)
Q Consensus 189 i~~~~p~~~~r~~Il~~~~~~ 209 (611)
++|..-..++...|+...++-
T Consensus 1029 ~hFddipedEle~ILh~rc~i 1049 (4600)
T COG5271 1029 MHFDDIPEDELEEILHGRCEI 1049 (4600)
T ss_pred hhcccCcHHHHHHHHhccCcc
Confidence 899999999999999877653
No 251
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.41 E-value=1.1e-11 Score=121.05 Aligned_cols=182 Identities=15% Similarity=0.152 Sum_probs=110.4
Q ss_pred cccccC--CcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEccccccc
Q 007255 17 AEEAIG--GNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG---AHLTVISPHSVHK 91 (611)
Q Consensus 17 ~~~~i~--G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~---~~~~~v~~~~~~~ 91 (611)
+|++.+ ++..++..+.++... ....+++|+||+|||||++++++++++. ....+++......
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW 86 (235)
T ss_pred CccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh
Confidence 345554 466667766665422 1235899999999999999999998764 3344544433211
Q ss_pred ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 007255 92 AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (611)
Q Consensus 92 ~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~ 171 (611)
...++.+.... -.+|+|||++.+.... .+...++.+++....... ..++++++++
T Consensus 87 --------~~~~~~~~~~~------~dlliiDdi~~~~~~~--------~~~~~lf~l~n~~~e~g~---~~li~ts~~~ 141 (235)
T PRK08084 87 --------FVPEVLEGMEQ------LSLVCIDNIECIAGDE--------LWEMAIFDLYNRILESGR---TRLLITGDRP 141 (235)
T ss_pred --------hhHHHHHHhhh------CCEEEEeChhhhcCCH--------HHHHHHHHHHHHHHHcCC---CeEEEeCCCC
Confidence 11122222111 2489999999875432 334444444443221110 1355555566
Q ss_pred ccc---ccHHhhccCCcc--eEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCCccccHHHHHHH
Q 007255 172 VDA---IDPALRRSGRFD--AEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEALCRE 239 (611)
Q Consensus 172 ~~~---l~~~l~~~~Rf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~~~~dl~~l~~~ 239 (611)
+.. +.|++++ |+. ..+.+.+|+.+++.++++......++.- +.-++.++..+.|- .+.+..+++.
T Consensus 142 p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d-~r~l~~~l~~ 212 (235)
T PRK08084 142 PRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDRE-MRTLFMTLDQ 212 (235)
T ss_pred hHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC-HHHHHHHHHH
Confidence 655 5799999 774 6899999999999999988665544432 23477777776643 4445555554
No 252
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.41 E-value=2.9e-12 Score=127.33 Aligned_cols=142 Identities=21% Similarity=0.288 Sum_probs=97.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccc------cccccccchHHHHHHHHHH---------------HHhh
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS------VHKAHVGESEKALREAFSQ---------------ASSH 111 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~------~~~~~~~~~~~~l~~~f~~---------------~~~~ 111 (611)
..++||+||||||||++|+++|+.+|.+++.++++. +...+.+........-|.. ..-.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 479999999999999999999999999999987754 2222211111111110100 0000
Q ss_pred hhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC----------CCCCcEEEEEeecCcc-----ccc
Q 007255 112 ALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK----------TSVPHVVVVASTNRVD-----AID 176 (611)
Q Consensus 112 ~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~----------~~~~~v~ii~ttn~~~-----~l~ 176 (611)
....++.+|+|||+|.+.+ .++..|+..++...... ...+++.+|+|+|+.. .++
T Consensus 101 ~A~~~g~~lllDEi~r~~~----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~ 170 (262)
T TIGR02640 101 LAVREGFTLVYDEFTRSKP----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQ 170 (262)
T ss_pred HHHHcCCEEEEcchhhCCH----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceeccc
Confidence 0112467999999998754 67888888887632100 1224678999999853 668
Q ss_pred HHhhccCCcceEEEccCCCHHHHHHHHHHhh
Q 007255 177 PALRRSGRFDAEVEVTVPTAEERFEILKLYT 207 (611)
Q Consensus 177 ~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~ 207 (611)
+++.+ || ..+.++.|+.++..+|++...
T Consensus 171 ~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 171 DALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred HHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 99998 98 489999999999999998764
No 253
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=8.9e-12 Score=137.02 Aligned_cols=188 Identities=19% Similarity=0.266 Sum_probs=134.8
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------------
Q 007255 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH------------- 80 (611)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~------------- 80 (611)
+...|++|+|++.+++.|...+.. -..+..+||+||+|+|||++++.+|+.+.+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 346789999999999999998753 1245679999999999999999999988642
Q ss_pred ------------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHH
Q 007255 81 ------------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFT 148 (611)
Q Consensus 81 ------------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~ 148 (611)
++.+++.. ......++.+.+.+...+..+..-|++|||+|.|.. ..++.|+.
T Consensus 80 sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~----------~a~naLLK 143 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ----------AAFNAFLK 143 (614)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH----------HHHHHHHH
Confidence 11222110 112345666666665555555667999999998843 45788999
Q ss_pred HHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccC
Q 007255 149 LMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNG 227 (611)
Q Consensus 149 ~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g 227 (611)
.++.. +..+++|.+|+....+.+.+++ |+. .+.|.+++.++....++..+...++..+ ..+..++..++|
T Consensus 144 ~LEep------p~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 144 TLEEP------PSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHhCC------CCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99873 2346677777777899999998 874 7999999999999999988776665533 247778877765
Q ss_pred CccccHHHHHHH
Q 007255 228 YVGADLEALCRE 239 (611)
Q Consensus 228 ~~~~dl~~l~~~ 239 (611)
- .+++.++++.
T Consensus 215 d-lr~al~~Lek 225 (614)
T PRK14971 215 G-MRDALSIFDQ 225 (614)
T ss_pred C-HHHHHHHHHH
Confidence 3 3344444433
No 254
>PRK06893 DNA replication initiation factor; Validated
Probab=99.41 E-value=5.7e-12 Score=122.69 Aligned_cols=160 Identities=13% Similarity=0.152 Sum_probs=100.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCC
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCP 130 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~ 130 (611)
..++|+||||||||++++++|+++ +....+++..... .....+++.. .+..+|+|||++.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~------~~~dlLilDDi~~~~~ 105 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL------EQQDLVCLDDLQAVIG 105 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc------ccCCEEEEeChhhhcC
Confidence 468999999999999999999886 3344444443211 0111222222 1356999999998754
Q ss_pred CCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccccc---HHhhccCCcceEEEccCCCHHHHHHHHHHhh
Q 007255 131 RRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAID---PALRRSGRFDAEVEVTVPTAEERFEILKLYT 207 (611)
Q Consensus 131 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~---~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~ 207 (611)
.. .+...++.+++...... ..+++++++..|..++ ++++++.++...+.+++|+.+++.+|++..+
T Consensus 106 ~~--------~~~~~l~~l~n~~~~~~---~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a 174 (229)
T PRK06893 106 NE--------EWELAIFDLFNRIKEQG---KTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNA 174 (229)
T ss_pred Ch--------HHHHHHHHHHHHHHHcC---CcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHH
Confidence 32 23345566665432211 1245556666666554 8999855556788999999999999999877
Q ss_pred cCCCCCCc-ccHHHHHHhccCCccccHHHHHHH
Q 007255 208 KKVPLDAN-VDLEAIATSCNGYVGADLEALCRE 239 (611)
Q Consensus 208 ~~~~~~~~-~~~~~la~~~~g~~~~dl~~l~~~ 239 (611)
....+..+ ..++.++..+.|- .+.+..++..
T Consensus 175 ~~~~l~l~~~v~~~L~~~~~~d-~r~l~~~l~~ 206 (229)
T PRK06893 175 YQRGIELSDEVANFLLKRLDRD-MHTLFDALDL 206 (229)
T ss_pred HHcCCCCCHHHHHHHHHhccCC-HHHHHHHHHH
Confidence 65554433 3477778776643 3444444443
No 255
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.41 E-value=1.1e-11 Score=127.81 Aligned_cols=175 Identities=22% Similarity=0.289 Sum_probs=118.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEEcccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-----HLTVISPHSVH 90 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~-----~~~~v~~~~~~ 90 (611)
+.+++++|++++++.|..++.. ....+++|+||||||||++++++++++.. .++.+++++..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 6679999999999999988743 12246999999999999999999998743 34444433211
Q ss_pred cccccchHHHHHHHHHHHH-hhhhc-CCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 007255 91 KAHVGESEKALREAFSQAS-SHALS-GKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS 168 (611)
Q Consensus 91 ~~~~~~~~~~l~~~f~~~~-~~~~~-~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~t 168 (611)
....+...+.... ..+.. ..+.+++|||+|.+.. ..+..|+..++.... ...+|.+
T Consensus 81 ------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~----------~~~~~L~~~le~~~~------~~~lIl~ 138 (319)
T PRK00440 81 ------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS----------DAQQALRRTMEMYSQ------NTRFILS 138 (319)
T ss_pred ------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH----------HHHHHHHHHHhcCCC------CCeEEEE
Confidence 1111222222221 11111 2356999999998843 335667777765332 2456667
Q ss_pred ecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCC
Q 007255 169 TNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGY 228 (611)
Q Consensus 169 tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~ 228 (611)
+|.+..+.+++.+ |+. .+.|++++.++...+++.++...+.. ....+..++..+.|.
T Consensus 139 ~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd 196 (319)
T PRK00440 139 CNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGD 196 (319)
T ss_pred eCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 7777788888888 775 68999999999999999888765543 233577888776653
No 256
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.39 E-value=1.4e-12 Score=130.14 Aligned_cols=141 Identities=17% Similarity=0.215 Sum_probs=100.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccc--cccchHHHH----------HHHHHHHHhhhhcCCCeE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA--HVGESEKAL----------REAFSQASSHALSGKPSV 119 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~--~~~~~~~~l----------~~~f~~~~~~~~~~~~~i 119 (611)
..++++|.||||||||++++.+|+.++.+++.++++..... ..|...-.+ ...+..+ ...+++
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A-----~~~g~i 137 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWA-----LQHNVA 137 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhH-----HhCCeE
Confidence 45799999999999999999999999999999987643322 223211000 0111112 134789
Q ss_pred EEEccccccCCCCCCCchhhHHHHHHHHHHHhcC--------CCCCCCCCcEEEEEeecCcc------------cccHHh
Q 007255 120 VFIDEIDALCPRRDHRREQDVRIASQLFTLMDSN--------KPSKTSVPHVVVVASTNRVD------------AIDPAL 179 (611)
Q Consensus 120 l~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~--------~~~~~~~~~v~ii~ttn~~~------------~l~~~l 179 (611)
|++||+|...+ +++..|..+++.. .......+.+.+|+|+|+.+ .+++++
T Consensus 138 lllDEin~a~p----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~ 207 (327)
T TIGR01650 138 LCFDEYDAGRP----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQ 207 (327)
T ss_pred EEechhhccCH----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHH
Confidence 99999998755 5567777777631 11122445799999999853 568999
Q ss_pred hccCCcceEEEccCCCHHHHHHHHHHhhcC
Q 007255 180 RRSGRFDAEVEVTVPTAEERFEILKLYTKK 209 (611)
Q Consensus 180 ~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~ 209 (611)
+. ||...+.++.|+.++-.+|+......
T Consensus 208 lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 208 MD--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred Hh--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 98 99878899999999999999876543
No 257
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=1.8e-11 Score=125.70 Aligned_cols=186 Identities=17% Similarity=0.188 Sum_probs=124.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------EEEE-cc
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------LTVI-SP 86 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~-------~~~v-~~ 86 (611)
...+++++|++++++.|..++.. -+.+..+||+||+|+|||++++.+|+.+.+. .... .+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 36788999999999999998754 1345679999999999999999999998651 1000 00
Q ss_pred ---c-----------ccc---cc--c------ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHH
Q 007255 87 ---H-----------SVH---KA--H------VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVR 141 (611)
Q Consensus 87 ---~-----------~~~---~~--~------~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~ 141 (611)
. ++. .. . ..-....++.+.+........++..|++|||+|.|.. .
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----------~ 156 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----------N 156 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----------H
Confidence 0 000 00 0 0111234444444333333345567999999998854 5
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHH
Q 007255 142 IASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAI 221 (611)
Q Consensus 142 ~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~l 221 (611)
.++.|+..+++.. .+.++|..|+.++.+.|.+++ |+ ..+.|++|+.++..+++.........+ +..+..+
T Consensus 157 aanaLLk~LEEpp------~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i 226 (351)
T PRK09112 157 AANAILKTLEEPP------ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEAL 226 (351)
T ss_pred HHHHHHHHHhcCC------CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHH
Confidence 5788999998632 245666667778889999998 88 489999999999999998743322211 2235666
Q ss_pred HHhccCCcccc
Q 007255 222 ATSCNGYVGAD 232 (611)
Q Consensus 222 a~~~~g~~~~d 232 (611)
+..+.|.....
T Consensus 227 ~~~s~G~pr~A 237 (351)
T PRK09112 227 LQRSKGSVRKA 237 (351)
T ss_pred HHHcCCCHHHH
Confidence 66666654443
No 258
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=2e-12 Score=132.63 Aligned_cols=153 Identities=19% Similarity=0.190 Sum_probs=111.5
Q ss_pred ccccccc-hhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEE-------------
Q 007255 288 TWEDIGG-LRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF------------- 353 (611)
Q Consensus 288 ~~~~i~g-~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~------------- 353 (611)
.|+.|.| ++.+.+.+...+.. .+.++.+||+||+|+||+++|+++|+.+.+.-.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 5788888 89999999988763 356778999999999999999999998754310
Q ss_pred ---eecchhhcc-ccccc--hHHHHHHHHHHHH----hcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcC
Q 007255 354 ---SLSGAELYS-MYVGE--SEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (611)
Q Consensus 354 ---~~~~~~~~~-~~~g~--~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 423 (611)
.-+-+++.- ...|. .-..++.+.+.+. .....|++|||+|.+ +....+.||+.|+
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~--------------~~~a~NaLLK~LE- 135 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM--------------TASAANSLLKFLE- 135 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh--------------CHHHHHHHHHHhc-
Confidence 000011100 00111 1234555544433 123359999999877 3567899999999
Q ss_pred CCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHH
Q 007255 424 LEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILR 471 (611)
Q Consensus 424 ~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~ 471 (611)
++++.+++|++|+.++.+.+.+++ |+. .+.|++|+.++..+.++
T Consensus 136 -EPp~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 136 -EPSGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQ 179 (329)
T ss_pred -CCCCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHH
Confidence 688899999999999999999998 887 89999999998877776
No 259
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.39 E-value=2.9e-11 Score=118.33 Aligned_cols=126 Identities=24% Similarity=0.359 Sum_probs=87.5
Q ss_pred CcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCC------------CcccchhccCCCC
Q 007255 384 PSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNR------------PHAIDAALMRPGR 451 (611)
Q Consensus 384 p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~------------~~~ld~al~r~gR 451 (611)
|.||||||+|.| .-+.++-|-+.|+. .=--++|++||+ |+-++..|+. |
T Consensus 292 pGVLFIDEvHmL--------------DIE~FsFlnrAlEs---e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML--------------DIECFSFLNRALES---ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh--------------hHHHHHHHHHHhhc---ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 556777777766 12344444445542 112367778884 6678888887 7
Q ss_pred ccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 007255 452 FDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 452 f~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
+- +|...+++.++.+.|+++..+...+. ++..++.|+....--|-+..-+++.-|...|-++. ...+..+|+..+.
T Consensus 353 ll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg--~~~V~~~dVe~a~ 429 (450)
T COG1224 353 LL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG--SKRVEVEDVERAK 429 (450)
T ss_pred ee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC--CCeeehhHHHHHH
Confidence 75 78888999999999999888776665 44557888888776677777787777777777664 4457777777765
Q ss_pred h
Q 007255 531 D 531 (611)
Q Consensus 531 ~ 531 (611)
.
T Consensus 430 ~ 430 (450)
T COG1224 430 E 430 (450)
T ss_pred H
Confidence 4
No 260
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.3e-11 Score=124.22 Aligned_cols=213 Identities=25% Similarity=0.373 Sum_probs=136.1
Q ss_pred ccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----EEEEccccccccc-
Q 007255 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-----LTVISPHSVHKAH- 93 (611)
Q Consensus 20 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~-----~~~v~~~~~~~~~- 93 (611)
.+.+.++.++++...+...+. -..|.+++++||||||||.+++.+++++... ++++||......+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~---------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR---------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc---------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 489999999999998755333 1244569999999999999999999998543 7889987543221
Q ss_pred --------------ccchH-HHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCC
Q 007255 94 --------------VGESE-KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKT 158 (611)
Q Consensus 94 --------------~~~~~-~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 158 (611)
.|... +.+..+++.... .....|+++||+|.|..... +++..|+......
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~---~~~~~IvvLDEid~L~~~~~-------~~LY~L~r~~~~~----- 153 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSK---KGKTVIVILDEVDALVDKDG-------EVLYSLLRAPGEN----- 153 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh---cCCeEEEEEcchhhhccccc-------hHHHHHHhhcccc-----
Confidence 11111 122222222221 24567999999999987532 4455555554443
Q ss_pred CCCcEEEEEeecCc---ccccHHhhccCCcc-eEEEccCCCHHHHHHHHHHhhcCCCCCC--ccc-HHHHH---HhccCC
Q 007255 159 SVPHVVVVASTNRV---DAIDPALRRSGRFD-AEVEVTVPTAEERFEILKLYTKKVPLDA--NVD-LEAIA---TSCNGY 228 (611)
Q Consensus 159 ~~~~v~ii~ttn~~---~~l~~~l~~~~Rf~-~~i~~~~p~~~~r~~Il~~~~~~~~~~~--~~~-~~~la---~~~~g~ 228 (611)
..++.+|+.+|.. +.++|.+.+ ++. .+|.||+++.+|...|+........... +.+ ++.++ ....|
T Consensus 154 -~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G- 229 (366)
T COG1474 154 -KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG- 229 (366)
T ss_pred -ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-
Confidence 2368899999885 478999998 543 4689999999999999998876532221 112 33333 33333
Q ss_pred ccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHH
Q 007255 229 VGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHA 268 (611)
Q Consensus 229 ~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a 268 (611)
..+-...+++.|...|-++.. ..++.++...+
T Consensus 230 DAR~aidilr~A~eiAe~~~~--------~~v~~~~v~~a 261 (366)
T COG1474 230 DARKAIDILRRAGEIAEREGS--------RKVSEDHVREA 261 (366)
T ss_pred cHHHHHHHHHHHHHHHHhhCC--------CCcCHHHHHHH
Confidence 333344566777666654433 24555555554
No 261
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.38 E-value=1.4e-11 Score=120.16 Aligned_cols=181 Identities=21% Similarity=0.298 Sum_probs=114.9
Q ss_pred CCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccchH
Q 007255 22 GGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESE 98 (611)
Q Consensus 22 ~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~~ 98 (611)
.+.+.+++.+.+++.. ..+.+++|+||+|||||++++++++.+ +.+++.+++..+....
T Consensus 20 ~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~----- 81 (226)
T TIGR03420 20 GGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD----- 81 (226)
T ss_pred CCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH-----
Confidence 3577788888776521 245799999999999999999999876 4677888877664321
Q ss_pred HHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccccc--
Q 007255 99 KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAID-- 176 (611)
Q Consensus 99 ~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~-- 176 (611)
..++... .+..+|+|||+|.+.... ..+..+..+++...... ..++++++..+..++
T Consensus 82 ---~~~~~~~------~~~~lLvIDdi~~l~~~~--------~~~~~L~~~l~~~~~~~----~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 82 ---PEVLEGL------EQADLVCLDDVEAIAGQP--------EWQEALFHLYNRVREAG----GRLLIAGRAAPAQLPLR 140 (226)
T ss_pred ---HHHHhhc------ccCCEEEEeChhhhcCCh--------HHHHHHHHHHHHHHHcC----CeEEEECCCChHHCCcc
Confidence 1222221 124599999999875421 22445555554321111 123444443443332
Q ss_pred -HHhhccCCc--ceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCccccHHHHHHHHHHHH
Q 007255 177 -PALRRSGRF--DAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEALCREATMSA 244 (611)
Q Consensus 177 -~~l~~~~Rf--~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~~~dl~~l~~~a~~~a 244 (611)
+.+.+ |+ ...+.+++|+.+++..+++.+........+ ..+..++.. -+.+.+++.++++.+...+
T Consensus 141 ~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 141 LPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRAS 209 (226)
T ss_pred cHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHH
Confidence 77777 55 468999999999999999987665443322 236777774 3345677777777655433
No 262
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=2.3e-11 Score=125.61 Aligned_cols=184 Identities=20% Similarity=0.212 Sum_probs=125.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE------------
Q 007255 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL------------ 81 (611)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~------------ 81 (611)
..+.+++|+|++++++.|.+.+.. -+.+..+||+||+|+||+++|.++|+.+.+.-
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 346789999999999999988754 13456799999999999999999999884321
Q ss_pred ----------------------EEEcccccccc---cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCc
Q 007255 82 ----------------------TVISPHSVHKA---HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR 136 (611)
Q Consensus 82 ----------------------~~v~~~~~~~~---~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~ 136 (611)
+.+....-... ...-....++++.+........+.+.|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 11110000000 00012344555555554444456788999999998843
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcc
Q 007255 137 EQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV 216 (611)
Q Consensus 137 ~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~ 216 (611)
..++.|+..+++. +.+.++|.+|+.++.+.+.+++ |+. .+.|++|+.++..+++...... ..+.
T Consensus 156 ----~aanaLLK~LEep------p~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~ 219 (365)
T PRK07471 156 ----NAANALLKVLEEP------PARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDD 219 (365)
T ss_pred ----HHHHHHHHHHhcC------CCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHH
Confidence 5678899999863 2346777788888889999988 874 8999999999999998875321 1121
Q ss_pred cHHHHHHhccCCccc
Q 007255 217 DLEAIATSCNGYVGA 231 (611)
Q Consensus 217 ~~~~la~~~~g~~~~ 231 (611)
.+..++..++|..+.
T Consensus 220 ~~~~l~~~s~Gsp~~ 234 (365)
T PRK07471 220 PRAALAALAEGSVGR 234 (365)
T ss_pred HHHHHHHHcCCCHHH
Confidence 235566666665444
No 263
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=1.9e-11 Score=131.58 Aligned_cols=168 Identities=22% Similarity=0.351 Sum_probs=109.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEcccccc
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDAL 128 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l 128 (611)
++++|+|++|+|||+|++++++++ +..++++++.++...+...........|.... .+..+|+|||++.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-----~~~DLLlIDDIq~l 389 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-----REMDILLVDDIQFL 389 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-----hcCCEEEEehhccc
Confidence 569999999999999999999976 45778888877654433221111111222221 13569999999988
Q ss_pred CCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcc---cccHHhhccCCc--ceEEEccCCCHHHHHHHH
Q 007255 129 CPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD---AIDPALRRSGRF--DAEVEVTVPTAEERFEIL 203 (611)
Q Consensus 129 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~---~l~~~l~~~~Rf--~~~i~~~~p~~~~r~~Il 203 (611)
.... ..+..|+.+++...... .-+||++...+. .++++|++ || ...+.+..|+.+.|..|+
T Consensus 390 ~gke--------~tqeeLF~l~N~l~e~g----k~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 390 EDKE--------STQEEFFHTFNTLHNAN----KQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred cCCH--------HHHHHHHHHHHHHHhcC----CCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHH
Confidence 6532 23445555555433221 124444333343 56899998 66 567899999999999999
Q ss_pred HHhhcCCCCCCc-ccHHHHHHhccCCccccHHHHHHHHH
Q 007255 204 KLYTKKVPLDAN-VDLEAIATSCNGYVGADLEALCREAT 241 (611)
Q Consensus 204 ~~~~~~~~~~~~-~~~~~la~~~~g~~~~dl~~l~~~a~ 241 (611)
+..+....+... .-+++|+....+ +.+.|+.++....
T Consensus 456 ~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~ 493 (617)
T PRK14086 456 RKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVT 493 (617)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 998877665533 347777776653 3556666655543
No 264
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.37 E-value=3.6e-11 Score=111.75 Aligned_cols=192 Identities=21% Similarity=0.265 Sum_probs=139.3
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchh
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAE 359 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~ 359 (611)
..+.+.+.++.|.+.+++.|.+.-...+ ...|.+++||+|..|||||++++|+-++. +..+++++..+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~---------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFA---------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHH---------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 3455789999999999999877554322 23567899999999999999999999887 56788888888
Q ss_pred hccccccchHHHHHHHHHHHHhcC-CcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCC--CCCCCeEEEEec
Q 007255 360 LYSMYVGESEALLRNTFQRARLAA-PSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL--EQAKGILVLAAT 436 (611)
Q Consensus 360 ~~~~~~g~~~~~~~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~~~~~vI~~t 436 (611)
+.. +..+++..+..+ .-|||+|+.- .+..+...+.|-..|||- ..+.+|+|-+|+
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-------------Fe~gd~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLS-------------FEEGDDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCC-------------CCCCchHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 755 666777776543 3499999872 223344567777777764 356789999999
Q ss_pred CCCcccchh--------------------ccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCc-ccHH----HHHHh
Q 007255 437 NRPHAIDAA--------------------LMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDD-VDLR----SIAEE 491 (611)
Q Consensus 437 n~~~~ld~a--------------------l~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~----~la~~ 491 (611)
|+.+.++.. +.=+.||...+-|++++.++..+|++.+.+++.+.-+ ..+. +.|..
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~ 261 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATT 261 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 987654421 1112399999999999999999999999998887643 2232 23334
Q ss_pred CCCCCHHHHHHHHH
Q 007255 492 TELFTGAELEGLCR 505 (611)
Q Consensus 492 ~~g~s~~~i~~~~~ 505 (611)
..|-||+-..+.++
T Consensus 262 rg~RSGR~A~QF~~ 275 (287)
T COG2607 262 RGGRSGRVAWQFIR 275 (287)
T ss_pred cCCCccHhHHHHHH
Confidence 44667776666555
No 265
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.37 E-value=6.3e-12 Score=133.41 Aligned_cols=171 Identities=24% Similarity=0.366 Sum_probs=109.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEcccccccccccchHH-HHHHHHHHHHhhhhcCCCeEEEEcccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESEK-ALREAFSQASSHALSGKPSVVFIDEID 126 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~-~l~~~f~~~~~~~~~~~~~il~IDeid 126 (611)
.++++|+||+|||||++++++++++ +..++++++.++.......... .... |.... ....+|+|||+|
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~dlLiiDDi~ 209 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEE-FKEKY-----RSVDLLLIDDIQ 209 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHH-HHHHH-----HhCCEEEEehhh
Confidence 4689999999999999999999887 5667888877654332211110 1111 11111 125699999999
Q ss_pred ccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcc---cccHHhhccCCcc--eEEEccCCCHHHHHH
Q 007255 127 ALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD---AIDPALRRSGRFD--AEVEVTVPTAEERFE 201 (611)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~---~l~~~l~~~~Rf~--~~i~~~~p~~~~r~~ 201 (611)
.+.... ..+..++..++...... ..++|++...|. .+++++.+ ||. ..+.+++|+.++|..
T Consensus 210 ~l~~~~--------~~~~~l~~~~n~~~~~~----~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 210 FLAGKE--------RTQEEFFHTFNALHENG----KQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred hhcCCH--------HHHHHHHHHHHHHHHCC----CCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHH
Confidence 886532 22344555554322111 234555555554 45688988 775 579999999999999
Q ss_pred HHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHHHHH
Q 007255 202 ILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSA 244 (611)
Q Consensus 202 Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a 244 (611)
|++..+...+.. .+..++.++....+ +.++++.++......+
T Consensus 276 il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 276 ILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 999998776554 23347788877654 4566777666654443
No 266
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.37 E-value=1.9e-11 Score=124.24 Aligned_cols=166 Identities=23% Similarity=0.318 Sum_probs=110.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------cEEEEcccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-------HLTVISPHS 88 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~-------~~~~v~~~~ 88 (611)
-.|++|+|+++.|..|...+..| ...++||.||+|||||++++.+++.+.. +|. ..+..
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~ 79 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSD 79 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCC
Confidence 47899999999999998776553 2368999999999999999999877631 121 00000
Q ss_pred -------cc-------------------cccccchHHH------HHHHHHHHHh-----hhhcCCCeEEEEccccccCCC
Q 007255 89 -------VH-------------------KAHVGESEKA------LREAFSQASS-----HALSGKPSVVFIDEIDALCPR 131 (611)
Q Consensus 89 -------~~-------------------~~~~~~~~~~------l~~~f~~~~~-----~~~~~~~~il~IDeid~l~~~ 131 (611)
.. .-..+.++.. +...|..... .......++||+||++.+.+
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~- 158 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD- 158 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH-
Confidence 00 0001112221 1111221110 01123467999999998865
Q ss_pred CCCCchhhHHHHHHHHHHHhcCCC-------CCCCCCcEEEEEeecCcc-cccHHhhccCCcceEEEccCCC-HHHHHHH
Q 007255 132 RDHRREQDVRIASQLFTLMDSNKP-------SKTSVPHVVVVASTNRVD-AIDPALRRSGRFDAEVEVTVPT-AEERFEI 202 (611)
Q Consensus 132 ~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~~~v~ii~ttn~~~-~l~~~l~~~~Rf~~~i~~~~p~-~~~r~~I 202 (611)
..+..|+..|+.... +...+.++++|+|.|+.+ .+++++.. ||...+.+..|+ .+.+.+|
T Consensus 159 ---------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~i 227 (350)
T CHL00081 159 ---------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKI 227 (350)
T ss_pred ---------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHH
Confidence 678888888875321 122345789999999865 79999998 999999999997 6999999
Q ss_pred HHHhh
Q 007255 203 LKLYT 207 (611)
Q Consensus 203 l~~~~ 207 (611)
++...
T Consensus 228 l~~~~ 232 (350)
T CHL00081 228 VEQRT 232 (350)
T ss_pred HHhhh
Confidence 98753
No 267
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.37 E-value=4.4e-12 Score=116.85 Aligned_cols=188 Identities=19% Similarity=0.194 Sum_probs=121.9
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-C----CcEEeecc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-E----ASFFSLSG 357 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-~----~~~~~~~~ 357 (611)
.+.+..+.||+|.++....|.-+... |- ..+++|.||||||||+-+.++|.++ | -.+.++++
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~-----------gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKE-----------GN--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHc-----------CC--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 44566789999999999998877664 22 2379999999999999999999998 2 24667777
Q ss_pred hhhccccccchHHHHHHHHHHHHhcCCc---EEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEE
Q 007255 358 AELYSMYVGESEALLRNTFQRARLAAPS---IIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLA 434 (611)
Q Consensus 358 ~~~~~~~~g~~~~~~~~~~~~a~~~~p~---il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~ 434 (611)
++-.+ ...-...++...+.--..+|+ |+++||+|++. .-...+|-..|+- .+....|..
T Consensus 87 SdeRG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT--------------~gAQQAlRRtMEi--yS~ttRFal 148 (333)
T KOG0991|consen 87 SDERG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT--------------AGAQQALRRTMEI--YSNTTRFAL 148 (333)
T ss_pred ccccc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh--------------hHHHHHHHHHHHH--Hcccchhhh
Confidence 76433 222333444443333334443 99999999773 2344556566653 344566778
Q ss_pred ecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHH
Q 007255 435 ATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAG 508 (611)
Q Consensus 435 ~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~ 508 (611)
++|..+.|-.++-+ |+. ++.|...+..+...-+....+...+. .+..++.+..-++| |+++.++...
T Consensus 149 aCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNnLQ 216 (333)
T KOG0991|consen 149 ACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNNLQ 216 (333)
T ss_pred hhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHHHH
Confidence 89999988766665 665 45555666666555555444333333 33446666665555 6777666543
No 268
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=2.8e-11 Score=123.90 Aligned_cols=177 Identities=11% Similarity=0.218 Sum_probs=123.9
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------EEEEcccc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------LTVISPHS 88 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~--------~~~v~~~~ 88 (611)
.|++|+|++.+++.|...+.. -+.+..+||+||+|+|||++|+.+|+.+.+. +..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-
Confidence 368999999999999988743 2345678999999999999999999987442 2222221
Q ss_pred cccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 007255 89 VHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS 168 (611)
Q Consensus 89 ~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~t 168 (611)
.........++++.+.....+..++..|++||++|.+.. ...+.|+..+++ +++++++|.+
T Consensus 69 ---~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~----------~a~naLLK~LEe------pp~~t~~il~ 129 (313)
T PRK05564 69 ---NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE----------QAQNAFLKTIEE------PPKGVFIILL 129 (313)
T ss_pred ---cCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH----------HHHHHHHHHhcC------CCCCeEEEEE
Confidence 001122344666666555555556677999999988743 567899999986 3335666777
Q ss_pred ecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccc
Q 007255 169 TNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGA 231 (611)
Q Consensus 169 tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~ 231 (611)
|+.++.+.|.+++ |+. .+.|++|+.++....++..... .+ ...+..++..++|..++
T Consensus 130 ~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g~~~~ 186 (313)
T PRK05564 130 CENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDGIPGK 186 (313)
T ss_pred eCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCCCHHH
Confidence 7788999999999 874 8999999999998888765432 11 22345556655554443
No 269
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.37 E-value=6.3e-12 Score=127.55 Aligned_cols=161 Identities=20% Similarity=0.317 Sum_probs=104.4
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-------CCc--EEee
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-------EAS--FFSL 355 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-------~~~--~~~~ 355 (611)
....|++|+|++++++.+.-.... ...+++||+||||||||++|+++|..+ +++ +..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 346799999999999988765432 112579999999999999999999988 332 1111
Q ss_pred cc---------hhhc---------------cccccch--HHHH---HHHHHH--HHhcCCcEEEEcccccccccCCCCCC
Q 007255 356 SG---------AELY---------------SMYVGES--EALL---RNTFQR--ARLAAPSIIFFDEADVVGAKRGGSSS 404 (611)
Q Consensus 356 ~~---------~~~~---------------~~~~g~~--~~~~---~~~~~~--a~~~~p~il~iDeid~l~~~~~~~~~ 404 (611)
.. ..+. +...|.. +..+ ...|+. ....+..+||+||++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl--------- 140 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL--------- 140 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------
Confidence 00 0000 0011110 0000 000110 00112349999999977
Q ss_pred CCcchhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCCCc-ccchhccCCCCccceeecCCCCH-HHHHHHHH
Q 007255 405 TSITVGERLLSTLLTEMDGLE-----------QAKGILVLAATNRPH-AIDAALMRPGRFDLVLYVPPPDL-EARHEILR 471 (611)
Q Consensus 405 ~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~~tn~~~-~ld~al~r~gRf~~~i~~~~p~~-~~r~~il~ 471 (611)
....++.|+..|+.-. ...++++|+++|..+ .++++++. ||...+.++.|.. ++|.+|++
T Consensus 141 -----~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 141 -----EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred -----CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 3567788888886321 235688888888655 58889998 9999999998877 89999998
Q ss_pred HHh
Q 007255 472 VHT 474 (611)
Q Consensus 472 ~~~ 474 (611)
...
T Consensus 214 ~~~ 216 (334)
T PRK13407 214 RRD 216 (334)
T ss_pred Hhh
Confidence 643
No 270
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.36 E-value=3.2e-11 Score=127.95 Aligned_cols=211 Identities=19% Similarity=0.309 Sum_probs=137.2
Q ss_pred ccccccCCcHHHHHHHHHHHHh--hhhCchHHHhc-------------------CCCCCceEEEEcCCCCcHHHHHHHHH
Q 007255 16 KAEEAIGGNRAAVEALRELITF--PLLYSSQAQKL-------------------GLKWPRGLLLYGPPGTGKTSLVRAVV 74 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~--~~~~~~~~~~~-------------------g~~~~~~iLl~Gp~GtGKT~la~~la 74 (611)
+.|.++.|-+.+-..+..|+.. |..+.....++ +.++.+-+||+||||-||||||+.+|
T Consensus 268 k~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViA 347 (877)
T KOG1969|consen 268 KKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIA 347 (877)
T ss_pred hHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHH
Confidence 7789999999998888877753 22233211111 22334779999999999999999999
Q ss_pred HHhCCcEEEEcccccccccccchHHHHHHHHHHHHh----hhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHH
Q 007255 75 RECGAHLTVISPHSVHKAHVGESEKALREAFSQASS----HALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM 150 (611)
Q Consensus 75 ~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~----~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l 150 (611)
++.|..++.+|+++-.. ...++.....+.+ .....+|.+|+|||||--. ..++..++.++
T Consensus 348 kqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~----------~~~Vdvilslv 411 (877)
T KOG1969|consen 348 KQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP----------RAAVDVILSLV 411 (877)
T ss_pred HhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc----------HHHHHHHHHHH
Confidence 99999999999987432 2233333333332 2123689999999998432 24566666666
Q ss_pred hcC------CCC---------CCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc
Q 007255 151 DSN------KPS---------KTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN 215 (611)
Q Consensus 151 ~~~------~~~---------~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~ 215 (611)
... ... ....-.--|||.||.. ..|+|+.---|...++|.+|+..-..+=|+..|....+..+
T Consensus 412 ~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d 489 (877)
T KOG1969|consen 412 KATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRAD 489 (877)
T ss_pred HhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCC
Confidence 521 110 0000123588999964 56788643357788999999999888888888776655433
Q ss_pred ccHHHHHHhccCCccccHHHHHHHHHHHHhhh
Q 007255 216 VDLEAIATSCNGYVGADLEALCREATMSAVKR 247 (611)
Q Consensus 216 ~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r 247 (611)
...+...|+ +...|++..++.....+.+.
T Consensus 490 --~~aL~~L~e-l~~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 490 --SKALNALCE-LTQNDIRSCINTLQFLASNV 518 (877)
T ss_pred --HHHHHHHHH-HhcchHHHHHHHHHHHHHhc
Confidence 334444443 33457877777666555543
No 271
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.35 E-value=4.7e-12 Score=128.51 Aligned_cols=167 Identities=25% Similarity=0.325 Sum_probs=107.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEE--cc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG-------AHLTVI--SP 86 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~-------~~~~~v--~~ 86 (611)
.+|++|+|++++++.|.-....+ ...|+||.|+||||||+++++++..+. .++-.. ..
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 46899999999999887644221 125899999999999999999999883 211110 00
Q ss_pred c---------cc-------ccccccchHHHHHH--HHHHH---------HhhhhcCCCeEEEEccccccCCCCCCCchhh
Q 007255 87 H---------SV-------HKAHVGESEKALRE--AFSQA---------SSHALSGKPSVVFIDEIDALCPRRDHRREQD 139 (611)
Q Consensus 87 ~---------~~-------~~~~~~~~~~~l~~--~f~~~---------~~~~~~~~~~il~IDeid~l~~~~~~~~~~~ 139 (611)
. .+ .....+.++..+-. .++.. .........++||+||++.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~--------- 142 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED--------- 142 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH---------
Confidence 0 00 00000111110100 00110 0000113356999999998754
Q ss_pred HHHHHHHHHHHhcCCC-------CCCCCCcEEEEEeecCcc-cccHHhhccCCcceEEEccCCCH-HHHHHHHHHhh
Q 007255 140 VRIASQLFTLMDSNKP-------SKTSVPHVVVVASTNRVD-AIDPALRRSGRFDAEVEVTVPTA-EERFEILKLYT 207 (611)
Q Consensus 140 ~~~~~~ll~~l~~~~~-------~~~~~~~v~ii~ttn~~~-~l~~~l~~~~Rf~~~i~~~~p~~-~~r~~Il~~~~ 207 (611)
..+..|++.|+.... ....+.++++++++|+.+ .+++++.. ||...+.+++|.. +++.+|++...
T Consensus 143 -~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 143 -HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred -HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 678889999876431 112345689999999855 68999988 9998999998866 89999998743
No 272
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.35 E-value=1e-11 Score=117.45 Aligned_cols=144 Identities=19% Similarity=0.219 Sum_probs=102.4
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHhCCc------------------------EEeecchhhccccccchHHHHHHHHH
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEAS------------------------FFSLSGAELYSMYVGESEALLRNTFQ 377 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~ 377 (611)
..++.+||+||+|+|||++|+++|..+.+. +..+.... . .-....++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence 456789999999999999999999998543 11111110 0 012345555565
Q ss_pred HHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCcc
Q 007255 378 RARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFD 453 (611)
Q Consensus 378 ~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~ 453 (611)
.+.. ....|++|||+|.+. ....+.|++.|+. +++...+|++|+.+..+.+++.+ |+.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~--------------~~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s--r~~ 148 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN--------------EAAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS--RCQ 148 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh--hcE
Confidence 5543 234599999999872 3456889999984 56677788888888999999998 886
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCC
Q 007255 454 LVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETEL 494 (611)
Q Consensus 454 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g 494 (611)
.+.|++|+.++..++++.. .+ ++..+..++..+.|
T Consensus 149 -~~~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 149 -VLPFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGG 183 (188)
T ss_pred -EeeCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCC
Confidence 8999999999999888865 22 23446666666655
No 273
>PRK09087 hypothetical protein; Validated
Probab=99.34 E-value=1.2e-11 Score=119.72 Aligned_cols=170 Identities=18% Similarity=0.185 Sum_probs=112.8
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCC
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST 405 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~ 405 (611)
.++|+||+|+|||+|+++++...+..++. ..++... ++.... ..+|+|||++.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~--~~~~~~~-----------~~~~~~---~~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIH--PNEIGSD-----------AANAAA---EGPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEec--HHHcchH-----------HHHhhh---cCeEEEECCCCCCC--------
Confidence 48999999999999999999887665433 2222211 111111 14899999997621
Q ss_pred CcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCccc---chhccCCCCcc--ceeecCCCCHHHHHHHHHHHhcCCCCC
Q 007255 406 SITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAI---DAALMRPGRFD--LVLYVPPPDLEARHEILRVHTRNMKVG 480 (611)
Q Consensus 406 ~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l---d~al~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~~~ 480 (611)
. . .+|...++.+...++.++|+++..|..+ .+.+.+ |+. .++.+..|+.++|.++++..++...+.
T Consensus 102 ~----~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~ 172 (226)
T PRK09087 102 D----E---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLY 172 (226)
T ss_pred C----H---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 0 1 2233333333455677787777666643 567777 875 799999999999999999887765554
Q ss_pred -CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Q 007255 481 -DDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDS 532 (611)
Q Consensus 481 -~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~ 532 (611)
++..++.|++...| +.+.+..++......+... .++++...+..++..
T Consensus 173 l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~---~~~it~~~~~~~l~~ 221 (226)
T PRK09087 173 VDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER---KSRITRALAAEVLNE 221 (226)
T ss_pred CCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHh
Confidence 34457889998876 6666666666555444433 356777777777754
No 274
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=4e-11 Score=121.53 Aligned_cols=184 Identities=17% Similarity=0.207 Sum_probs=127.9
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---------------
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL--------------- 81 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~--------------- 81 (611)
.|++|+|++.+++.|.+.+.. -+.+..+||+||+|+||+++|.++|+.+.+.-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 368999999999999998854 13467999999999999999999999874321
Q ss_pred ---EEEccccccccc-----------------ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHH
Q 007255 82 ---TVISPHSVHKAH-----------------VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVR 141 (611)
Q Consensus 82 ---~~v~~~~~~~~~-----------------~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~ 141 (611)
..+.+....... ..-....++++.+.+...+..+...|++||++|.|.. .
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------~ 139 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------A 139 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH----------H
Confidence 111111000000 0011234566655555555556678999999998844 5
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHH
Q 007255 142 IASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAI 221 (611)
Q Consensus 142 ~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~l 221 (611)
..+.|++.+++- + +.++|..|+.++.+-|.+++ |+ ..+.|++|+.++..+++......... +.+...+
T Consensus 140 aaNaLLK~LEEP------p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l 207 (314)
T PRK07399 140 AANALLKTLEEP------G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPEL 207 (314)
T ss_pred HHHHHHHHHhCC------C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHH
Confidence 678999999873 2 34667777888999999999 88 48999999999999999876432111 1124677
Q ss_pred HHhccCCccccHH
Q 007255 222 ATSCNGYVGADLE 234 (611)
Q Consensus 222 a~~~~g~~~~dl~ 234 (611)
+..++|-.+..+.
T Consensus 208 ~~~a~Gs~~~al~ 220 (314)
T PRK07399 208 LALAQGSPGAAIA 220 (314)
T ss_pred HHHcCCCHHHHHH
Confidence 7777776555443
No 275
>PRK08727 hypothetical protein; Validated
Probab=99.34 E-value=7.8e-11 Score=114.94 Aligned_cols=147 Identities=21% Similarity=0.318 Sum_probs=95.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccC
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALC 129 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~ 129 (611)
...++|+||+|||||+++++++..+ +....+++..++. ..+.+.++... +..+|+|||++.+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~------~~dlLiIDDi~~l~ 106 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALE------GRSLVALDGLESIA 106 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHh------cCCEEEEeCccccc
Confidence 3679999999999999999997765 4455566544322 12223333332 24599999999876
Q ss_pred CCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccc---cHHhhccCCc--ceEEEccCCCHHHHHHHHH
Q 007255 130 PRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI---DPALRRSGRF--DAEVEVTVPTAEERFEILK 204 (611)
Q Consensus 130 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l---~~~l~~~~Rf--~~~i~~~~p~~~~r~~Il~ 204 (611)
... .....++.+++...... .-+++.+..+|..+ ++++++ || ...+.+++|+.+++.+|++
T Consensus 107 ~~~--------~~~~~lf~l~n~~~~~~----~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 107 GQR--------EDEVALFDFHNRARAAG----ITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred CCh--------HHHHHHHHHHHHHHHcC----CeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHH
Confidence 432 22345555555432211 12444444456644 699998 75 4678999999999999999
Q ss_pred HhhcCCCCCC-cccHHHHHHhccC
Q 007255 205 LYTKKVPLDA-NVDLEAIATSCNG 227 (611)
Q Consensus 205 ~~~~~~~~~~-~~~~~~la~~~~g 227 (611)
.++....+.. +..+..++..+.|
T Consensus 173 ~~a~~~~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 173 ERAQRRGLALDEAAIDWLLTHGER 196 (233)
T ss_pred HHHHHcCCCCCHHHHHHHHHhCCC
Confidence 8776544432 2347788887663
No 276
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.34 E-value=1.5e-11 Score=118.59 Aligned_cols=167 Identities=25% Similarity=0.375 Sum_probs=102.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEcccccccccccchHH-HHHHHHHHHHhhhhcCCCeEEEEcccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESEK-ALREAFSQASSHALSGKPSVVFIDEID 126 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~-~l~~~f~~~~~~~~~~~~~il~IDeid 126 (611)
.++++|+||+|+|||+|++++++++ +..++++++.++...+...... .+..+.+... ...+|+|||++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~------~~DlL~iDDi~ 107 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR------SADLLIIDDIQ 107 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC------TSSEEEEETGG
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh------cCCEEEEecch
Confidence 3579999999999999999998875 5678888877765433221111 1111111111 24599999999
Q ss_pred ccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcc---cccHHhhccCCcc--eEEEccCCCHHHHHH
Q 007255 127 ALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD---AIDPALRRSGRFD--AEVEVTVPTAEERFE 201 (611)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~---~l~~~l~~~~Rf~--~~i~~~~p~~~~r~~ 201 (611)
.+... ..++..++.+++...... ..+++++...|. .+++.+.+ ||. ..+.+.+|+.++|.+
T Consensus 108 ~l~~~--------~~~q~~lf~l~n~~~~~~----k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 108 FLAGK--------QRTQEELFHLFNRLIESG----KQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRR 173 (219)
T ss_dssp GGTTH--------HHHHHHHHHHHHHHHHTT----SEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHH
T ss_pred hhcCc--------hHHHHHHHHHHHHHHhhC----CeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHH
Confidence 88542 245666776666543322 235555545555 45789988 664 689999999999999
Q ss_pred HHHHhhcCCCCCCccc-HHHHHHhccCCccccHHHHHHHH
Q 007255 202 ILKLYTKKVPLDANVD-LEAIATSCNGYVGADLEALCREA 240 (611)
Q Consensus 202 Il~~~~~~~~~~~~~~-~~~la~~~~g~~~~dl~~l~~~a 240 (611)
|++.+....++.-+.+ ++.++.... .+.+++..+++..
T Consensus 174 il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l 212 (219)
T PF00308_consen 174 ILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRL 212 (219)
T ss_dssp HHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHH
Confidence 9999888777664433 566666654 3455565555543
No 277
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.4e-11 Score=118.70 Aligned_cols=130 Identities=31% Similarity=0.362 Sum_probs=91.4
Q ss_pred ccchhHHHHHHHHHhhccCCChhHHhhcC----C-CCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc-ccc
Q 007255 292 IGGLRDLKKKLQQAVEWPIKHSTAFSRLG----I-SPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MYV 365 (611)
Q Consensus 292 i~g~~~~k~~l~~~~~~~~~~~~~~~~~~----~-~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~-~~~ 365 (611)
++|++.+|+.|.-++- +|-.+..... + -...++||.||+|||||.||+.+|..++.||..-++..+.. .|+
T Consensus 63 VIGQe~AKKvLsVAVY---NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYV 139 (408)
T COG1219 63 VIGQEQAKKVLSVAVY---NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYV 139 (408)
T ss_pred eecchhhhceeeeeeh---hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcccc
Confidence 6788888877654332 1211111110 1 12357999999999999999999999999999999988875 699
Q ss_pred cchHHH-HHHHHHHH----HhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCC
Q 007255 366 GESEAL-LRNTFQRA----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL 424 (611)
Q Consensus 366 g~~~~~-~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 424 (611)
|+..++ +..++..+ ......|+||||||.+..+-...+-..+-...-++.+||+.++|.
T Consensus 140 GEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 140 GEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred chhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 986543 44444433 123345999999999988765555444444567899999999974
No 278
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=5e-11 Score=120.40 Aligned_cols=155 Identities=12% Similarity=0.153 Sum_probs=108.5
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHhCCc------------------------EEeecchhhccccccchHHHHHHHHH
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEAS------------------------FFSLSGAELYSMYVGESEALLRNTFQ 377 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~ 377 (611)
+.++++||+||+|+||+++|+++|..+.|. ++.+.+.+ ++. -....++.+.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHH
Confidence 567899999999999999999999988552 11121110 011 12344555554
Q ss_pred HHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCcc
Q 007255 378 RARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFD 453 (611)
Q Consensus 378 ~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~ 453 (611)
.+.. ..-.|++||++|.+ +....|.||+.|+ ++++++++|.+|+.++.+.|.+++ |+.
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m--------------~~~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC~ 159 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERL--------------TEAAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RCQ 159 (325)
T ss_pred HHhhccccCCceEEEEechhhh--------------CHHHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hce
Confidence 4432 23349999999977 4667899999999 799999999999999999999998 988
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHH
Q 007255 454 LVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLC 504 (611)
Q Consensus 454 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~ 504 (611)
.+.|++|+.++..+.+..... ..+.....++..+.| ++.....++
T Consensus 160 -~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g-~p~~A~~~~ 204 (325)
T PRK06871 160 -TWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYG-RPLLALTFL 204 (325)
T ss_pred -EEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCC-CHHHHHHHh
Confidence 889999999988887774321 122234555666666 344333333
No 279
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.33 E-value=1.4e-11 Score=111.09 Aligned_cols=137 Identities=34% Similarity=0.533 Sum_probs=91.3
Q ss_pred chhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccchHH
Q 007255 294 GLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEA 370 (611)
Q Consensus 294 g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~~~ 370 (611)
|.+...+.+...+.. ...++++++||||||||++++.+++.+ +.+++.++..............
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 445555555555442 244679999999999999999999998 8889988887765533222111
Q ss_pred H---HHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCC----CCCeEEEEecCCCc--c
Q 007255 371 L---LRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ----AKGILVLAATNRPH--A 441 (611)
Q Consensus 371 ~---~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~----~~~~~vI~~tn~~~--~ 441 (611)
. ....+.......+.++++||++.+. ......++..+..... ..++.+|+++|.+. .
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~~--------------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~ 134 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSLS--------------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGD 134 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhhh--------------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCC
Confidence 1 1122233444567899999998761 1223445454443332 46788888998877 6
Q ss_pred cchhccCCCCccceeecC
Q 007255 442 IDAALMRPGRFDLVLYVP 459 (611)
Q Consensus 442 ld~al~r~gRf~~~i~~~ 459 (611)
+++.+.+ ||+..+.++
T Consensus 135 ~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 135 LDRALYD--RLDIRIVIP 150 (151)
T ss_pred cChhHHh--hhccEeecC
Confidence 7777777 998777775
No 280
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.33 E-value=2.5e-11 Score=123.53 Aligned_cols=165 Identities=24% Similarity=0.311 Sum_probs=106.7
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEE-------
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-------GAHLT------- 82 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l-------~~~~~------- 82 (611)
+|+.|+|++++|..|.-.+..| ...+++|.|++|+|||+++++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 5789999999999987665443 23689999999999999999999877 22111
Q ss_pred --EEcccc----------------cccccccchHHHH------HHHHHH-----HHhhhhcCCCeEEEEccccccCCCCC
Q 007255 83 --VISPHS----------------VHKAHVGESEKAL------REAFSQ-----ASSHALSGKPSVVFIDEIDALCPRRD 133 (611)
Q Consensus 83 --~v~~~~----------------~~~~~~~~~~~~l------~~~f~~-----~~~~~~~~~~~il~IDeid~l~~~~~ 133 (611)
..+|.. +.+...+.++..+ ...+.. .........+++||+||++.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 000000 0010011111111 111000 00011123457999999998854
Q ss_pred CCchhhHHHHHHHHHHHhcCCC-------CCCCCCcEEEEEeecCcc-cccHHhhccCCcceEEEccCCCH-HHHHHHHH
Q 007255 134 HRREQDVRIASQLFTLMDSNKP-------SKTSVPHVVVVASTNRVD-AIDPALRRSGRFDAEVEVTVPTA-EERFEILK 204 (611)
Q Consensus 134 ~~~~~~~~~~~~ll~~l~~~~~-------~~~~~~~v~ii~ttn~~~-~l~~~l~~~~Rf~~~i~~~~p~~-~~r~~Il~ 204 (611)
..+..|++.|+.... ....+.++++|+|+|+.+ .+++++.. ||...+.++.|+. +++.+|++
T Consensus 146 -------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~ 216 (337)
T TIGR02030 146 -------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVE 216 (337)
T ss_pred -------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHH
Confidence 678888998876420 111234689999998765 78999998 9999999999976 88889988
Q ss_pred Hh
Q 007255 205 LY 206 (611)
Q Consensus 205 ~~ 206 (611)
..
T Consensus 217 ~~ 218 (337)
T TIGR02030 217 RR 218 (337)
T ss_pred hh
Confidence 74
No 281
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=3.6e-11 Score=122.81 Aligned_cols=157 Identities=15% Similarity=0.208 Sum_probs=109.6
Q ss_pred CCCCCCcceeCCCCCChHHHHHHHHHHhCCc------------------------EEeecchhhccccccchHHHHHHHH
Q 007255 321 ISPVRGALLHGPPGCSKTTLAKAAAHAAEAS------------------------FFSLSGAELYSMYVGESEALLRNTF 376 (611)
Q Consensus 321 ~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~ 376 (611)
.+.++++||+||+|+||+++|.++|..+.|. +..+.+..- . ..-.-..++.+.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-K--SSLGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-c--ccCCHHHHHHHH
Confidence 3667899999999999999999999988542 111211100 0 001233455555
Q ss_pred HHHH----hcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCc
Q 007255 377 QRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRF 452 (611)
Q Consensus 377 ~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf 452 (611)
+.+. .....|++||++|.+ +....|.||+.|+ +++++++||.+|+.|+.+.|.+++ |+
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m--------------~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RC 159 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALL--------------TDAAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RC 159 (334)
T ss_pred HHHhhccccCCceEEEEcchHhh--------------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cc
Confidence 4443 233459999999977 4678899999999 799999999999999999999998 99
Q ss_pred cceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHH
Q 007255 453 DLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLC 504 (611)
Q Consensus 453 ~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~ 504 (611)
. .+.|++|+.++..+.+... .+. +..+...++..+.| ++.....++
T Consensus 160 q-~~~~~~~~~~~~~~~L~~~---~~~-~~~~a~~~~~la~G-~~~~Al~l~ 205 (334)
T PRK07993 160 R-LHYLAPPPEQYALTWLSRE---VTM-SQDALLAALRLSAG-APGAALALL 205 (334)
T ss_pred c-cccCCCCCHHHHHHHHHHc---cCC-CHHHHHHHHHHcCC-CHHHHHHHh
Confidence 8 6899999998888777532 122 22335566777777 444444443
No 282
>PHA02244 ATPase-like protein
Probab=99.32 E-value=3.8e-11 Score=121.07 Aligned_cols=130 Identities=21% Similarity=0.248 Sum_probs=85.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccc--hHHHHH-HHHHHHHhhhhcCCCeEEEEcccccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE--SEKALR-EAFSQASSHALSGKPSVVFIDEIDAL 128 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~--~~~~l~-~~f~~~~~~~~~~~~~il~IDeid~l 128 (611)
.+.++||+||||||||++|+++|..++.+++.++...-.....|. ....+. ..|-.+ ..++++|+|||++.+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A-----~~~GgvLiLDEId~a 192 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA-----FKKGGLFFIDEIDAS 192 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH-----hhcCCEEEEeCcCcC
Confidence 457899999999999999999999999999988743100000010 000010 111111 224789999999987
Q ss_pred CCCCCCCchhhHHHHHHHHHHHhcCC-----CCCCCCCcEEEEEeecCc-----------ccccHHhhccCCcceEEEcc
Q 007255 129 CPRRDHRREQDVRIASQLFTLMDSNK-----PSKTSVPHVVVVASTNRV-----------DAIDPALRRSGRFDAEVEVT 192 (611)
Q Consensus 129 ~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~~~~~v~ii~ttn~~-----------~~l~~~l~~~~Rf~~~i~~~ 192 (611)
.+ .++..|...++... ......+++.+|+|+|+. ..+++++++ ||. .++++
T Consensus 193 ~p----------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~d 259 (383)
T PHA02244 193 IP----------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFD 259 (383)
T ss_pred CH----------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCC
Confidence 55 45666666665321 111223578999999983 477999998 995 79999
Q ss_pred CCCHHHH
Q 007255 193 VPTAEER 199 (611)
Q Consensus 193 ~p~~~~r 199 (611)
.|+..+.
T Consensus 260 yp~~~E~ 266 (383)
T PHA02244 260 YDEKIEH 266 (383)
T ss_pred CCcHHHH
Confidence 9984443
No 283
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.3e-10 Score=119.87 Aligned_cols=216 Identities=21% Similarity=0.284 Sum_probs=143.9
Q ss_pred ccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----EEeecchhhcccc
Q 007255 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS-----FFSLSGAELYSMY 364 (611)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~-----~~~~~~~~~~~~~ 364 (611)
+.+.+.+...+++...+.-.+. ...|.++++|||||||||+.++.++.++... ++++|+......|
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~---------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR---------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc---------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 4477788888888777654332 2344569999999999999999999998433 8888886554421
Q ss_pred ---------------ccch-HHHHHHHHHHHHh-cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCC
Q 007255 365 ---------------VGES-EALLRNTFQRARL-AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQA 427 (611)
Q Consensus 365 ---------------~g~~-~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 427 (611)
.|.+ ......+++.... ....||++||+|.|..+.+ .++-.|+...+.. .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--c
Confidence 2222 2233334444333 3455999999999975421 4556666655532 5
Q ss_pred CCeEEEEecCCCc---ccchhccCCCCcc-ceeecCCCCHHHHHHHHHHHhcCCCCC---CcccH---HHHHHhCCCCCH
Q 007255 428 KGILVLAATNRPH---AIDAALMRPGRFD-LVLYVPPPDLEARHEILRVHTRNMKVG---DDVDL---RSIAEETELFTG 497 (611)
Q Consensus 428 ~~~~vI~~tn~~~---~ld~al~r~gRf~-~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~---~~la~~~~g~s~ 497 (611)
.++.+|+.+|..+ .+|+.+.+ ++. ..|.||+++.++...|++...+..... ++.-+ ..++....| +.
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DA 231 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DA 231 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cH
Confidence 6789999999875 57888876 554 569999999999999999766543222 22223 333444445 66
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Q 007255 498 AELEGLCREAGIVALREDISATAVRNRHFQTVKDS 532 (611)
Q Consensus 498 ~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~ 532 (611)
+-...+|+.|+..|-++. ...++.++...|...
T Consensus 232 R~aidilr~A~eiAe~~~--~~~v~~~~v~~a~~~ 264 (366)
T COG1474 232 RKAIDILRRAGEIAEREG--SRKVSEDHVREAQEE 264 (366)
T ss_pred HHHHHHHHHHHHHHHhhC--CCCcCHHHHHHHHHH
Confidence 777788899998888765 445666666666433
No 284
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.31 E-value=1.2e-11 Score=127.77 Aligned_cols=149 Identities=23% Similarity=0.279 Sum_probs=108.1
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhC---------------------
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE--------------------- 349 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~--------------------- 349 (611)
++.|.+.+...+....... + ..++.+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 4566777777666665520 1 3345799999999999999999999986
Q ss_pred ---CcEEeecchhhccccccchHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhc
Q 007255 350 ---ASFFSLSGAELYSMYVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (611)
Q Consensus 350 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 422 (611)
-.++.+++++..... -....++.+-+..... ...|++|||+|.+ +....+.+++.++
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m--------------t~~A~nallk~lE 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL--------------TEDAANALLKTLE 134 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH--------------hHHHHHHHHHHhc
Confidence 467788887754421 2234455554443322 3459999999987 3467899999998
Q ss_pred CCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHH
Q 007255 423 GLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILR 471 (611)
Q Consensus 423 ~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~ 471 (611)
+++.+..+|++||.|+.+-+.+.+ |+. .+.|++|+...+....+
T Consensus 135 --ep~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 --EPPKNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred --cCCCCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 688899999999999999888888 887 78887766555544444
No 285
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.31 E-value=9.4e-11 Score=110.78 Aligned_cols=148 Identities=18% Similarity=0.264 Sum_probs=103.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEcccccccccccchHHHHHHHHHH
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAH------------------------LTVISPHSVHKAHVGESEKALREAFSQ 107 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~f~~ 107 (611)
.+..+||+||+|+|||++++.+++.+... +..+.... . ......++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 45789999999999999999999988542 12221110 0 1123456666666
Q ss_pred HHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcce
Q 007255 108 ASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDA 187 (611)
Q Consensus 108 ~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~ 187 (611)
+...+..+...|++|||+|.+.. ..++.|+..++... ....+|.+++.+..+.+++++ |+.
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~----------~~~~~Ll~~le~~~------~~~~~il~~~~~~~l~~~i~s--r~~- 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE----------AAANALLKTLEEPP------PNTLFILITPSPEKLLPTIRS--RCQ- 148 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH----------HHHHHHHHHhcCCC------CCeEEEEEECChHhChHHHHh--hcE-
Confidence 65555556678999999998854 44677888887622 235566667777899999998 874
Q ss_pred EEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCC
Q 007255 188 EVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGY 228 (611)
Q Consensus 188 ~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~ 228 (611)
.+.|++|+.++..+++... +++ +..+..++..++|.
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGGS 184 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCCC
Confidence 8999999999999999876 233 23466777766654
No 286
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.31 E-value=3.7e-11 Score=108.23 Aligned_cols=144 Identities=34% Similarity=0.494 Sum_probs=91.0
Q ss_pred CcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccchHH
Q 007255 23 GNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEK 99 (611)
Q Consensus 23 G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~~~ 99 (611)
|++..++.+...+.. ....+++++||||||||++++.+++.+ +.+++.+++.+...........
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 666777777666533 145789999999999999999999998 7888888877654332211111
Q ss_pred HHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcc--cccH
Q 007255 100 ALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD--AIDP 177 (611)
Q Consensus 100 ~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~--~l~~ 177 (611)
... ............++.+|++||++.+.+ .....++..+............+.+|++++... .+++
T Consensus 69 ~~~-~~~~~~~~~~~~~~~~lilDe~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 69 GHF-LVRLLFELAEKAKPGVLFIDEIDSLSR----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhh-hHhHHHHhhccCCCeEEEEeChhhhhH----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 000 011111112234578999999997722 234455555555432111123578888888766 6788
Q ss_pred HhhccCCcceEEEcc
Q 007255 178 ALRRSGRFDAEVEVT 192 (611)
Q Consensus 178 ~l~~~~Rf~~~i~~~ 192 (611)
.+.+ ||+.++.++
T Consensus 138 ~~~~--r~~~~i~~~ 150 (151)
T cd00009 138 ALYD--RLDIRIVIP 150 (151)
T ss_pred hHHh--hhccEeecC
Confidence 8877 887677765
No 287
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=2.3e-11 Score=128.93 Aligned_cols=168 Identities=18% Similarity=0.281 Sum_probs=104.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccC
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALC 129 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~ 129 (611)
.++++|+||+|+|||+|++++++++ +..++++++..+...........-...|.... ....+|+|||++.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-----~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-----RNVDALFIEDIEVFS 215 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-----ccCCEEEEcchhhhc
Confidence 3689999999999999999999876 57778888765543221111100011222221 235699999999875
Q ss_pred CCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcc---cccHHhhccCCcc--eEEEccCCCHHHHHHHHH
Q 007255 130 PRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD---AIDPALRRSGRFD--AEVEVTVPTAEERFEILK 204 (611)
Q Consensus 130 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~---~l~~~l~~~~Rf~--~~i~~~~p~~~~r~~Il~ 204 (611)
+.. ..+..++..++...... ..++++++..|. .+++++.+ ||. ..+.+++|+.+++..|++
T Consensus 216 ~k~--------~~qeelf~l~N~l~~~~----k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 216 GKG--------ATQEEFFHTFNSLHTEG----KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred CCh--------hhHHHHHHHHHHHHHCC----CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHH
Confidence 432 22344444443321111 234555545454 56799998 874 789999999999999999
Q ss_pred HhhcCCCCCCc-ccHHHHHHhccCCccccHHHHHHHH
Q 007255 205 LYTKKVPLDAN-VDLEAIATSCNGYVGADLEALCREA 240 (611)
Q Consensus 205 ~~~~~~~~~~~-~~~~~la~~~~g~~~~dl~~l~~~a 240 (611)
..+...++.-+ ..++.++....+ +.+.+...+...
T Consensus 282 ~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l 317 (445)
T PRK12422 282 RKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLL 317 (445)
T ss_pred HHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 98877654433 236667776654 334454444443
No 288
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.31 E-value=1.1e-10 Score=113.85 Aligned_cols=178 Identities=21% Similarity=0.245 Sum_probs=109.8
Q ss_pred cccccC--CcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccccccc
Q 007255 17 AEEAIG--GNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHK 91 (611)
Q Consensus 17 ~~~~i~--G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~ 91 (611)
+|++.+ +.+..+..+.++.. +.....+++|+||+|||||++++++++++ +..++.+++..+..
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~ 83 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL 83 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence 455544 45666666666542 12345799999999999999999999876 55777777665431
Q ss_pred ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 007255 92 AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (611)
Q Consensus 92 ~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~ 171 (611)
. +.. .....+|+|||+|.+.+ ..+..++..++...... ..+++++++..
T Consensus 84 ~------------~~~------~~~~~~liiDdi~~l~~----------~~~~~L~~~~~~~~~~~---~~~vl~~~~~~ 132 (227)
T PRK08903 84 A------------FDF------DPEAELYAVDDVERLDD----------AQQIALFNLFNRVRAHG---QGALLVAGPAA 132 (227)
T ss_pred H------------Hhh------cccCCEEEEeChhhcCc----------hHHHHHHHHHHHHHHcC---CcEEEEeCCCC
Confidence 1 111 11356999999998743 22345555554422211 12344443333
Q ss_pred cc--cccHHhhccCCc--ceEEEccCCCHHHHHHHHHHhhcCCCCCCcc-cHHHHHHhccCCccccHHHHHHHH
Q 007255 172 VD--AIDPALRRSGRF--DAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVGADLEALCREA 240 (611)
Q Consensus 172 ~~--~l~~~l~~~~Rf--~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~~~~la~~~~g~~~~dl~~l~~~a 240 (611)
+. .+.+.+.+ || ...+.+++|+.+++..++..........-+. -++.++..+.| +.+.+..+++..
T Consensus 133 ~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l 203 (227)
T PRK08903 133 PLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDAL 203 (227)
T ss_pred HHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 32 35677877 65 4689999999999999998876655443322 36666764443 445555555553
No 289
>PRK04132 replication factor C small subunit; Provisional
Probab=99.31 E-value=4.6e-11 Score=133.62 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=121.2
Q ss_pred CcceeC--CCCCChHHHHHHHHHHh-----CCcEEeecchhhccccccchHHHHHHHHHHHHhcC------CcEEEEccc
Q 007255 326 GALLHG--PPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSMYVGESEALLRNTFQRARLAA------PSIIFFDEA 392 (611)
Q Consensus 326 ~~Ll~G--p~G~GKT~la~ala~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~------p~il~iDei 392 (611)
+-+..| |++.|||++|+++|+++ +.+++.+++++..+ -..++.+.+.+.... ..|++|||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 456779 99999999999999998 56799999987533 224555555443222 259999999
Q ss_pred ccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHH
Q 007255 393 DVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRV 472 (611)
Q Consensus 393 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~ 472 (611)
|.+ +...++.|++.|+ ++++++.||++||.++.+.+++++ |+. .+.|++|+.++....++.
T Consensus 640 D~L--------------t~~AQnALLk~lE--ep~~~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 640 DAL--------------TQDAQQALRRTME--MFSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ccC--------------CHHHHHHHHHHhh--CCCCCeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHHHHHHHH
Confidence 988 2456899999998 567889999999999999999998 986 899999999999988887
Q ss_pred HhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHH
Q 007255 473 HTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAG 508 (611)
Q Consensus 473 ~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~ 508 (611)
.+.+.++. ++..+..++..++| +.+...++++.+.
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 66654443 45568899999888 5555555555443
No 290
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.30 E-value=6.1e-11 Score=126.16 Aligned_cols=169 Identities=20% Similarity=0.257 Sum_probs=105.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEcccccccccccchH-HHHHHHHHHHHhhhhcCCCeEEEEcccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESE-KALREAFSQASSHALSGKPSVVFIDEID 126 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~~~~~~~~~~~-~~l~~~f~~~~~~~~~~~~~il~IDeid 126 (611)
.++++||||+|+|||+|++++++++ +..++++++.++......... ..+.. |.... ..++.+|+|||++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~----~~~~dvLlIDDi~ 204 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKY----RKKVDVLLIDDVQ 204 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHH----HhcCCEEEEechh
Confidence 4679999999999999999999986 356778887765433221110 01111 21111 1136799999999
Q ss_pred ccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcc---cccHHhhccCCc--ceEEEccCCCHHHHHH
Q 007255 127 ALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD---AIDPALRRSGRF--DAEVEVTVPTAEERFE 201 (611)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~---~l~~~l~~~~Rf--~~~i~~~~p~~~~r~~ 201 (611)
.+.... ..+..++..++...... ..+++++.+.|. .+.+++.+ || ...+.+++|+.+.|..
T Consensus 205 ~l~~~~--------~~q~elf~~~n~l~~~~----k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 205 FLIGKT--------GVQTELFHTFNELHDSG----KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred hhcCcH--------HHHHHHHHHHHHHHHcC----CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHH
Confidence 875431 22334444443322111 235555555555 45678888 66 4578999999999999
Q ss_pred HHHHhhcCCCCCC-cccHHHHHHhccCCccccHHHHHHHHH
Q 007255 202 ILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEALCREAT 241 (611)
Q Consensus 202 Il~~~~~~~~~~~-~~~~~~la~~~~g~~~~dl~~l~~~a~ 241 (611)
|++..+....+.- +..+..++....| +.+.++.++....
T Consensus 271 IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~ 310 (440)
T PRK14088 271 IARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLL 310 (440)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHH
Confidence 9999887544432 2347777777664 4566666665543
No 291
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.30 E-value=7.9e-11 Score=125.02 Aligned_cols=226 Identities=19% Similarity=0.222 Sum_probs=143.8
Q ss_pred cCCCcccccccchhHHHHHHHHHhhc--cCCChhHHhhc-------------------CCCCCCCcceeCCCCCChHHHH
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEW--PIKHSTAFSRL-------------------GISPVRGALLHGPPGCSKTTLA 341 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~--~~~~~~~~~~~-------------------~~~~~~~~Ll~Gp~G~GKT~la 341 (611)
.+.+..|.|+.|.+.+.+.+..++.. |--+-..+.++ +.++.+-+||+||||-|||+||
T Consensus 264 ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 264 KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLA 343 (877)
T ss_pred ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHH
Confidence 44556788999999888887776652 00000111111 2344467899999999999999
Q ss_pred HHHHHHhCCcEEeecchhhccccccchHHHHHHHHHHHH----hcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHH
Q 007255 342 KAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTL 417 (611)
Q Consensus 342 ~ala~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~l 417 (611)
+.+|..+|..++++++++-.. .......+..+...-. ...|..|+|||||.- ...++..+
T Consensus 344 HViAkqaGYsVvEINASDeRt--~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa--------------~~~~Vdvi 407 (877)
T KOG1969|consen 344 HVIAKQAGYSVVEINASDERT--APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA--------------PRAAVDVI 407 (877)
T ss_pred HHHHHhcCceEEEeccccccc--HHHHHHHHHHHHhhccccccCCCcceEEEecccCC--------------cHHHHHHH
Confidence 999999999999999988544 2222333333332221 256889999999832 13445555
Q ss_pred HHHhcCC------CCC--C-----------CeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCC
Q 007255 418 LTEMDGL------EQA--K-----------GILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMK 478 (611)
Q Consensus 418 l~~l~~~------~~~--~-----------~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~ 478 (611)
+..+..- .+. + ..-||++||.... |||+..--|.+++.|++|......+-|+..+....
T Consensus 408 lslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~ 485 (877)
T KOG1969|consen 408 LSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLVERLNEICHREN 485 (877)
T ss_pred HHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCChhHHHHHHHHHHhhhc
Confidence 5555410 000 0 1457888886553 44432225789999999999988888887776655
Q ss_pred CCCc-ccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 007255 479 VGDD-VDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 479 ~~~~-~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
...+ ..+..|++.++ .||+.+++.....+....-.+..+...+.....
T Consensus 486 mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~ 534 (877)
T KOG1969|consen 486 MRADSKALNALCELTQ----NDIRSCINTLQFLASNVDRRDSSISVKLICAKN 534 (877)
T ss_pred CCCCHHHHHHHHHHhc----chHHHHHHHHHHHHHhcccccccchhhhhhhhh
Confidence 4432 34566666554 599999998888777665444445554444433
No 292
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.29 E-value=7.2e-11 Score=120.03 Aligned_cols=159 Identities=19% Similarity=0.309 Sum_probs=105.7
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhC-------CcEEeecc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE-------ASFFSLSG 357 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~-------~~~~~~~~ 357 (611)
+...|++|+|++++|..|...+.. +...++||.||+|||||++|++++..+. ++|. ..+
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 456799999999999999887764 2335899999999999999999988762 2222 000
Q ss_pred h-------hhccc---------------c----ccchHHH------HHHHHHHH---------HhcCCcEEEEccccccc
Q 007255 358 A-------ELYSM---------------Y----VGESEAL------LRNTFQRA---------RLAAPSIIFFDEADVVG 396 (611)
Q Consensus 358 ~-------~~~~~---------------~----~g~~~~~------~~~~~~~a---------~~~~p~il~iDeid~l~ 396 (611)
. ++.+. + .|.++.. +...|... ...+..+||+||++.+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL- 156 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL- 156 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-
Confidence 0 00000 0 0111111 11111111 0122359999999987
Q ss_pred ccCCCCCCCCcchhHHHHHHHHHHhcCC-----------CCCCCeEEEEecCCCc-ccchhccCCCCccceeecCCCC-H
Q 007255 397 AKRGGSSSTSITVGERLLSTLLTEMDGL-----------EQAKGILVLAATNRPH-AIDAALMRPGRFDLVLYVPPPD-L 463 (611)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~~tn~~~-~ld~al~r~gRf~~~i~~~~p~-~ 463 (611)
....++.|+..|+.. ..+.++++|+|.|..+ .+.++++. ||..++.+..|+ .
T Consensus 157 -------------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~ 221 (350)
T CHL00081 157 -------------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDP 221 (350)
T ss_pred -------------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCCh
Confidence 245677788777531 1234688888777655 58999998 999999999997 5
Q ss_pred HHHHHHHHHH
Q 007255 464 EARHEILRVH 473 (611)
Q Consensus 464 ~~r~~il~~~ 473 (611)
+.+.+|++..
T Consensus 222 ~~e~~il~~~ 231 (350)
T CHL00081 222 ELRVKIVEQR 231 (350)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 293
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.29 E-value=5.3e-11 Score=133.80 Aligned_cols=144 Identities=24% Similarity=0.287 Sum_probs=101.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccc------ccc-cccchHHHHHHHHHHHHhhhhcCCCeEEEEcc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV------HKA-HVGESEKALREAFSQASSHALSGKPSVVFIDE 124 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~------~~~-~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDe 124 (611)
..+++||-|.||+|||+++.++|+..|..++.++.++- ++. .+++....+ .|..+.-...+..+.++++||
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef--~w~dapfL~amr~G~WVlLDE 1619 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEF--RWMDAPFLHAMRDGGWVLLDE 1619 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCcee--EecccHHHHHhhcCCEEEeeh
Confidence 34799999999999999999999999999999998742 221 122110100 111121112233477999999
Q ss_pred ccccCCCCCCCchhhHHHHHHHHHHHhcCCC--------CCCCCCcEEEEEeecCcc------cccHHhhccCCcceEEE
Q 007255 125 IDALCPRRDHRREQDVRIASQLFTLMDSNKP--------SKTSVPHVVVVASTNRVD------AIDPALRRSGRFDAEVE 190 (611)
Q Consensus 125 id~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~~~~~v~ii~ttn~~~------~l~~~l~~~~Rf~~~i~ 190 (611)
++... ..++..|-.++|.... +....+++.|+++.|+-+ .++..+.. ||. +++
T Consensus 1620 iNLaS----------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~ 1686 (4600)
T COG5271 1620 INLAS----------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVK 1686 (4600)
T ss_pred hhhhH----------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEE
Confidence 96542 2567778888876322 333457899999999843 78999988 997 789
Q ss_pred ccCCCHHHHHHHHHHhhcCC
Q 007255 191 VTVPTAEERFEILKLYTKKV 210 (611)
Q Consensus 191 ~~~p~~~~r~~Il~~~~~~~ 210 (611)
++.++.++...|........
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred ecccccchHHHHHHhhCCcc
Confidence 99999999999988776543
No 294
>PHA02244 ATPase-like protein
Probab=99.28 E-value=1.1e-10 Score=117.79 Aligned_cols=122 Identities=20% Similarity=0.298 Sum_probs=80.8
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCcEEeecch----hhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccC
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA----ELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKR 399 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~ 399 (611)
..++||+||||||||++|+++|..++.+++.++.. ++.+ +..........-|-.+. ..+.+++|||++.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~--- 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAF-KKGGLFFIDEIDASI--- 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHh-hcCCEEEEeCcCcCC---
Confidence 34699999999999999999999999999988742 1111 11111111111122222 345699999998762
Q ss_pred CCCCCCCcchhHHHHHHHHHHhcC---------CCCCCCeEEEEecCCC-----------cccchhccCCCCccceeecC
Q 007255 400 GGSSSTSITVGERLLSTLLTEMDG---------LEQAKGILVLAATNRP-----------HAIDAALMRPGRFDLVLYVP 459 (611)
Q Consensus 400 ~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~vI~~tn~~-----------~~ld~al~r~gRf~~~i~~~ 459 (611)
......|...++. .....++.+|+|+|.+ ..+++|++. ||- .|+|+
T Consensus 194 -----------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~d 259 (383)
T PHA02244 194 -----------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFD 259 (383)
T ss_pred -----------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCC
Confidence 2334444444431 1234678999999974 467899998 997 79999
Q ss_pred CCCHH
Q 007255 460 PPDLE 464 (611)
Q Consensus 460 ~p~~~ 464 (611)
.|+..
T Consensus 260 yp~~~ 264 (383)
T PHA02244 260 YDEKI 264 (383)
T ss_pred CCcHH
Confidence 99843
No 295
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.28 E-value=1.6e-12 Score=120.88 Aligned_cols=144 Identities=26% Similarity=0.391 Sum_probs=68.6
Q ss_pred cccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCC----------cEEeecc-
Q 007255 289 WEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA----------SFFSLSG- 357 (611)
Q Consensus 289 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~----------~~~~~~~- 357 (611)
|++|.||+.+|+.+.-+.. | .+++|++||||||||++|+++...+.- .+.++..
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 7899999999999988876 3 368999999999999999999977610 0000000
Q ss_pred ---hhhcc--ccc--cchHHHHHHHHHH--------HHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhc
Q 007255 358 ---AELYS--MYV--GESEALLRNTFQR--------ARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (611)
Q Consensus 358 ---~~~~~--~~~--g~~~~~~~~~~~~--------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 422 (611)
..+.. .|. ..+. ....++.- ....+..|||+||+..+ .+.++..|+..|+
T Consensus 67 ~~~~~~~~~~Pfr~phhs~-s~~~liGgg~~~~PGeislAh~GVLflDE~~ef--------------~~~vld~Lr~ple 131 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSA-SEAALIGGGRPPRPGEISLAHRGVLFLDELNEF--------------DRSVLDALRQPLE 131 (206)
T ss_dssp S---EEEE---EEEE-TT---HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS---------------HHHHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCc-CHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc--------------CHHHHHHHHHHHH
Confidence 00000 000 0000 01111110 11223459999999765 4678899988886
Q ss_pred CC-----------CCCCCeEEEEecCC-----------------------CcccchhccCCCCccceeecCCCCHH
Q 007255 423 GL-----------EQAKGILVLAATNR-----------------------PHAIDAALMRPGRFDLVLYVPPPDLE 464 (611)
Q Consensus 423 ~~-----------~~~~~~~vI~~tn~-----------------------~~~ld~al~r~gRf~~~i~~~~p~~~ 464 (611)
.- ..+.++++|+|+|. ...+..+++. |||..+.++..+++
T Consensus 132 ~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 132 DGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred CCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 32 22346899999883 1136667776 88888888776654
No 296
>PRK05642 DNA replication initiation factor; Validated
Probab=99.28 E-value=9.3e-11 Score=114.40 Aligned_cols=159 Identities=17% Similarity=0.238 Sum_probs=102.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccC
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALC 129 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~ 129 (611)
.++++|+||+|||||+|++++++++ +..+++++..++.... ..+.+... +..+|+|||++.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~------~~d~LiiDDi~~~~ 110 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE------QYELVCLDDLDVIA 110 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh------hCCEEEEechhhhc
Confidence 3789999999999999999998765 5667777776654321 11222221 12489999999775
Q ss_pred CCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccc---ccHHhhccCCc--ceEEEccCCCHHHHHHHHH
Q 007255 130 PRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA---IDPALRRSGRF--DAEVEVTVPTAEERFEILK 204 (611)
Q Consensus 130 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~---l~~~l~~~~Rf--~~~i~~~~p~~~~r~~Il~ 204 (611)
... .+...|+.+++...... ..++++++..+.. ..|++++ || ...+.+.+|+.+++..+++
T Consensus 111 ~~~--------~~~~~Lf~l~n~~~~~g----~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 111 GKA--------DWEEALFHLFNRLRDSG----RRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CCh--------HHHHHHHHHHHHHHhcC----CEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHH
Confidence 432 33455666665533221 3466666665543 3688998 77 4678899999999999999
Q ss_pred HhhcCCCCCC-cccHHHHHHhccCCccccHHHHHHHH
Q 007255 205 LYTKKVPLDA-NVDLEAIATSCNGYVGADLEALCREA 240 (611)
Q Consensus 205 ~~~~~~~~~~-~~~~~~la~~~~g~~~~dl~~l~~~a 240 (611)
..+....+.- +.-++.++....+ +.+.+..+++..
T Consensus 177 ~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERL 212 (234)
T ss_pred HHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 6665544432 2346666766553 345555555544
No 297
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.3e-11 Score=116.25 Aligned_cols=135 Identities=18% Similarity=0.309 Sum_probs=95.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHh-cCCC-CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccc-ccccc
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQK-LGLK-WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH-KAHVG 95 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~-~g~~-~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~-~~~~~ 95 (611)
+-++|++.+|+.|-.++.+.+.+-..... -... ...||||.||+|||||.+|+.+|+.++.+|..-++.++. ..|.|
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 34799999999998777654332211111 0111 226899999999999999999999999999999998876 45677
Q ss_pred chHHH-HHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCC----chhhHHHHHHHHHHHhcC
Q 007255 96 ESEKA-LREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR----REQDVRIASQLFTLMDSN 153 (611)
Q Consensus 96 ~~~~~-l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~----~~~~~~~~~~ll~~l~~~ 153 (611)
+-..+ +.+++..+.-.....+.+|++|||||.+....++. .-....+++.|+.++++.
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 66554 44555444433344567899999999999876432 223457899999999873
No 298
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=1.6e-10 Score=117.62 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=107.4
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHhCCcE-------------------------Eeecchhhc---------------
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEASF-------------------------FSLSGAELY--------------- 361 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~-------------------------~~~~~~~~~--------------- 361 (611)
+.++++||+||+|+||+++|+++|..+.|.. ..+.+....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 6678999999999999999999999986632 111111000
Q ss_pred ---cc----c-ccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCC
Q 007255 362 ---SM----Y-VGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKG 429 (611)
Q Consensus 362 ---~~----~-~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 429 (611)
++ . ..-.-..++.+.+.+.. ..-.|++||++|.+ +....|.||+.|| +++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m--------------~~~AaNaLLKtLE--EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL--------------NVAAANALLKTLE--EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc--------------CHHHHHHHHHHhc--CCCcC
Confidence 00 0 00112345555544332 22349999999877 4667899999999 79999
Q ss_pred eEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHH
Q 007255 430 ILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLC 504 (611)
Q Consensus 430 ~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~ 504 (611)
++||++|++|+.+.|.+++ |+. .+.|++|+.++..+.+... + .. +...++..+.| ++.....++
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rcq-~i~~~~~~~~~~~~~L~~~--~--~~---~~~~~l~~~~G-sp~~Al~~~ 226 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RCR-QFPMTVPAPEAAAAWLAAQ--G--VA---DADALLAEAGG-APLAALALA 226 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cCE-EEEecCCCHHHHHHHHHHc--C--CC---hHHHHHHHcCC-CHHHHHHHH
Confidence 9999999999999999998 996 8999999999999888743 1 11 12345566666 444443333
No 299
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.25 E-value=5.7e-10 Score=109.41 Aligned_cols=126 Identities=26% Similarity=0.313 Sum_probs=85.9
Q ss_pred CeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC------------cccccHHhhccCC
Q 007255 117 PSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR------------VDAIDPALRRSGR 184 (611)
Q Consensus 117 ~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~------------~~~l~~~l~~~~R 184 (611)
|+||||||+|.| +.+..+.|...|+..- .++ +|.+||+ |+.++..|+. |
T Consensus 292 pGVLFIDEvHmL----------DIE~FsFlnrAlEse~------aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML----------DIECFSFLNRALESEL------API-IILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh----------hHHHHHHHHHHhhccc------CcE-EEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 779999999876 2345566666666522 134 4455554 4578889988 8
Q ss_pred cceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccccccchhHH
Q 007255 185 FDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTME 263 (611)
Q Consensus 185 f~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~e 263 (611)
. ..|...+++.++..+|++...+...+..+ .-++.++.....-+-+-.-+|+.-|...+.++... .+..+
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~--------~V~~~ 423 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSK--------RVEVE 423 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCC--------eeehh
Confidence 7 47899999999999999998877665533 24777777776666666677777777777665432 24445
Q ss_pred HHHHHHh
Q 007255 264 DWRHARS 270 (611)
Q Consensus 264 d~~~a~~ 270 (611)
|...+..
T Consensus 424 dVe~a~~ 430 (450)
T COG1224 424 DVERAKE 430 (450)
T ss_pred HHHHHHH
Confidence 5555444
No 300
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=7.7e-11 Score=114.53 Aligned_cols=183 Identities=25% Similarity=0.379 Sum_probs=125.4
Q ss_pred ccCCcHHHHHHHHHHHHhhhhCchHHHhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc-cccc--
Q 007255 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGL-KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK-AHVG-- 95 (611)
Q Consensus 20 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~-~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~-~~~~-- 95 (611)
-|+|++++|+.+.-++.+-+.+.+.-.++.- -.|+|||++||+|+|||.+||.+|+..+.+|+.|-+..+.. .|.|
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrD 95 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRD 95 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeeccccccc
Confidence 4899999999998888775554444444332 26899999999999999999999999999998887653210 0000
Q ss_pred --------------------------------------------------------------------------------
Q 007255 96 -------------------------------------------------------------------------------- 95 (611)
Q Consensus 96 -------------------------------------------------------------------------------- 95 (611)
T Consensus 96 VesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~eIei 175 (444)
T COG1220 96 VESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDKEIEI 175 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCccEEEE
Confidence
Q ss_pred -------------------chHHHHHHHHHHHHhhh-----------------------------------hcCCCeEEE
Q 007255 96 -------------------ESEKALREAFSQASSHA-----------------------------------LSGKPSVVF 121 (611)
Q Consensus 96 -------------------~~~~~l~~~f~~~~~~~-----------------------------------~~~~~~il~ 121 (611)
+....+.++|....... ...+.+|+|
T Consensus 176 ev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~GIvF 255 (444)
T COG1220 176 EVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQNGIVF 255 (444)
T ss_pred EEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEE
Confidence 00011222222211100 011345999
Q ss_pred EccccccCCCCCCCc-h-hhHHHHHHHHHHHhcCCCC----CCCCCcEEEEEee----cCcccccHHhhccCCcceEEEc
Q 007255 122 IDEIDALCPRRDHRR-E-QDVRIASQLFTLMDSNKPS----KTSVPHVVVVAST----NRVDAIDPALRRSGRFDAEVEV 191 (611)
Q Consensus 122 IDeid~l~~~~~~~~-~-~~~~~~~~ll~~l~~~~~~----~~~~~~v~ii~tt----n~~~~l~~~l~~~~Rf~~~i~~ 191 (611)
|||||.++...+.++ + ....++..|+-++++..-. .....+++||++- ..|++|-|.|.- ||...+++
T Consensus 256 IDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfPIRVEL 333 (444)
T COG1220 256 IDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFPIRVEL 333 (444)
T ss_pred EehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCceEEEc
Confidence 999999998775332 2 3446888999888874322 1223578899874 457888899965 99999999
Q ss_pred cCCCHHHHHHHHH
Q 007255 192 TVPTAEERFEILK 204 (611)
Q Consensus 192 ~~p~~~~r~~Il~ 204 (611)
...+.++...|+.
T Consensus 334 ~~Lt~~Df~rILt 346 (444)
T COG1220 334 DALTKEDFERILT 346 (444)
T ss_pred ccCCHHHHHHHHc
Confidence 9999999999884
No 301
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.25 E-value=1.9e-11 Score=122.13 Aligned_cols=137 Identities=16% Similarity=0.183 Sum_probs=96.7
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccc--cccchHHH----------HHHHHHHHHhcCCcEEEEc
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM--YVGESEAL----------LRNTFQRARLAAPSIIFFD 390 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~--~~g~~~~~----------~~~~~~~a~~~~p~il~iD 390 (611)
..+++||.||||||||++|+.+|..++.+++.++....... ..|..... ....+-.|. ..+.++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence 34679999999999999999999999999998877554443 33321100 111222232 356789999
Q ss_pred ccccccccCCCCCCCCcchhHHHHHHHHHHhcC------------CCCCCCeEEEEecCCCc------------ccchhc
Q 007255 391 EADVVGAKRGGSSSTSITVGERLLSTLLTEMDG------------LEQAKGILVLAATNRPH------------AIDAAL 446 (611)
Q Consensus 391 eid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~------------~~~~~~~~vI~~tn~~~------------~ld~al 446 (611)
|+|..- .+..+.|...||. +.+...+.||+|+|..+ .++.|+
T Consensus 142 Ein~a~--------------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~ 207 (327)
T TIGR01650 142 EYDAGR--------------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQ 207 (327)
T ss_pred hhhccC--------------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHH
Confidence 999762 3344555445441 12445788999999754 368899
Q ss_pred cCCCCccceeecCCCCHHHHHHHHHHHhcC
Q 007255 447 MRPGRFDLVLYVPPPDLEARHEILRVHTRN 476 (611)
Q Consensus 447 ~r~gRf~~~i~~~~p~~~~r~~il~~~~~~ 476 (611)
+. ||-.++.++.|+.++-.+|+.....+
T Consensus 208 lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 208 MD--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred Hh--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 98 99888899999999999999866543
No 302
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.24 E-value=4.1e-11 Score=109.81 Aligned_cols=133 Identities=26% Similarity=0.338 Sum_probs=92.3
Q ss_pred chhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc----------------------
Q 007255 294 GLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS---------------------- 351 (611)
Q Consensus 294 g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~---------------------- 351 (611)
|++.+.+.|...+.. .+.++++||+||+|+||+++|.++|..+.+.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 788888888888873 3567889999999999999999999988432
Q ss_pred -EEeecchhhccccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCC
Q 007255 352 -FFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ 426 (611)
Q Consensus 352 -~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 426 (611)
++.+++.+-.. .-....++.+...+.. ....|++|||+|.+ +....++||+.|+ ++
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l--------------~~~a~NaLLK~LE--ep 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL--------------TEEAQNALLKTLE--EP 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHH--ST
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh--------------hHHHHHHHHHHhc--CC
Confidence 22222211100 1123445555555432 23459999999987 4678999999999 78
Q ss_pred CCCeEEEEecCCCcccchhccCCCCccceeecCC
Q 007255 427 AKGILVLAATNRPHAIDAALMRPGRFDLVLYVPP 460 (611)
Q Consensus 427 ~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~ 460 (611)
++++.+|++|+.++.+-+.+++ |+. .+.|++
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~ 160 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RCQ-VIRFRP 160 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TSE-EEEE--
T ss_pred CCCEEEEEEECChHHChHHHHh--hce-EEecCC
Confidence 8999999999999999999998 887 666654
No 303
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.24 E-value=6.5e-11 Score=121.97 Aligned_cols=159 Identities=25% Similarity=0.321 Sum_probs=105.0
Q ss_pred ccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc--ccccch
Q 007255 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK--AHVGES 97 (611)
Q Consensus 20 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~--~~~~~~ 97 (611)
.++|.++++..+..++. ...++||.||||||||++++.+|+.++.+++.+++..... ...|..
T Consensus 25 ~~~g~~~~~~~~l~a~~---------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLALL---------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHHH---------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 36777777776666553 3479999999999999999999999999999998874321 112211
Q ss_pred HHHHH----HHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCC-----CC-CCCCCcEEEEE
Q 007255 98 EKALR----EAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK-----PS-KTSVPHVVVVA 167 (611)
Q Consensus 98 ~~~l~----~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~-~~~~~~v~ii~ 167 (611)
.-... ..|............+|+++|||+...+ .+++.|+..|++.. .. ...+..+++|+
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPP----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccceEEEEeccccCCH----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 11110 0000000000000013999999998755 77899999998721 12 23345689999
Q ss_pred eecC-----cccccHHhhccCCcceEEEccCCCHH-HHHHHHHH
Q 007255 168 STNR-----VDAIDPALRRSGRFDAEVEVTVPTAE-ERFEILKL 205 (611)
Q Consensus 168 ttn~-----~~~l~~~l~~~~Rf~~~i~~~~p~~~-~r~~Il~~ 205 (611)
|+|+ ...+++++++ ||...++++.|+.+ +...++..
T Consensus 160 T~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 160 TQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILAR 201 (329)
T ss_pred ccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHh
Confidence 9994 4578999998 99888999999444 44444443
No 304
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.24 E-value=1.7e-10 Score=117.54 Aligned_cols=155 Identities=21% Similarity=0.278 Sum_probs=101.7
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-------CCcEE-------
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-------EASFF------- 353 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-------~~~~~------- 353 (611)
.|..|+|++++|..|.-.+.. +...+++|.|+||+|||+++++++..+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 478899999999988766553 224579999999999999999999877 33221
Q ss_pred --------------------------eecchhhccccccchHHHHHHH-------HH--HHHhcCCcEEEEccccccccc
Q 007255 354 --------------------------SLSGAELYSMYVGESEALLRNT-------FQ--RARLAAPSIIFFDEADVVGAK 398 (611)
Q Consensus 354 --------------------------~~~~~~~~~~~~g~~~~~~~~~-------~~--~a~~~~p~il~iDeid~l~~~ 398 (611)
.+......+...|... +... |. .....+..+||+||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d--~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L--- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLD--IERALTEGVKAFEPGLLARANRGILYIDEVNLL--- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchh--HhhHhhcCCEEeecCcceeccCCEEEecChHhC---
Confidence 0000000001222210 1110 00 001122359999999987
Q ss_pred CCCCCCCCcchhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCCCc-ccchhccCCCCccceeecCCCCH-HH
Q 007255 399 RGGSSSTSITVGERLLSTLLTEMDGLE-----------QAKGILVLAATNRPH-AIDAALMRPGRFDLVLYVPPPDL-EA 465 (611)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~~tn~~~-~ld~al~r~gRf~~~i~~~~p~~-~~ 465 (611)
....++.|+..|+.-. ...++++|+++|..+ .+.++++. ||..++.++.|+. ++
T Consensus 144 -----------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 144 -----------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVEL 210 (337)
T ss_pred -----------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHH
Confidence 2457778888775311 124678888887555 68899999 9999999998876 88
Q ss_pred HHHHHHHH
Q 007255 466 RHEILRVH 473 (611)
Q Consensus 466 r~~il~~~ 473 (611)
|.+|++..
T Consensus 211 r~eIL~~~ 218 (337)
T TIGR02030 211 RVEIVERR 218 (337)
T ss_pred HHHHHHhh
Confidence 99999864
No 305
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.24 E-value=1.8e-10 Score=118.94 Aligned_cols=154 Identities=27% Similarity=0.382 Sum_probs=110.5
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC--------------------
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG-------------------- 78 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~-------------------- 78 (611)
++++|.+.+...+..+.... + +.+..+||+||||+|||++|.++|+.+.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 1 DELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CCcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 35788888888888876431 1 2334599999999999999999999987
Q ss_pred ----CcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCC
Q 007255 79 ----AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK 154 (611)
Q Consensus 79 ----~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~ 154 (611)
..++.+++++..... .....++++-+........+..-|++|||+|.|.. ..++.++..++...
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~----------~A~nallk~lEep~ 137 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE----------DAANALLKTLEEPP 137 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH----------HHHHHHHHHhccCC
Confidence 466777776654321 22344555444444333334567999999998855 66888999998733
Q ss_pred CCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHH
Q 007255 155 PSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILK 204 (611)
Q Consensus 155 ~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~ 204 (611)
.+..+|.+||.++.+-+.+++ |+. .+.|++|+.........
T Consensus 138 ------~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 138 ------KNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ------CCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 357899999999999999998 884 78898866555544443
No 306
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.23 E-value=4e-10 Score=120.01 Aligned_cols=174 Identities=16% Similarity=0.231 Sum_probs=109.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
.++++|+|++|+|||+|++++++++ +..++++++.++............ ..+...... .....+|+|||++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~~--~~~~dvLiIDDiq~ 217 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKNE--ICQNDVLIIDDVQF 217 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHHH--hccCCEEEEecccc
Confidence 3689999999999999999999865 457778887776544332211100 111111111 12356999999998
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcc---cccHHhhccCCc--ceEEEccCCCHHHHHHH
Q 007255 128 LCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD---AIDPALRRSGRF--DAEVEVTVPTAEERFEI 202 (611)
Q Consensus 128 l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~---~l~~~l~~~~Rf--~~~i~~~~p~~~~r~~I 202 (611)
+.... ..+..++.+++...... ..+|+++..+|. .+++++.+ || ...+.+.+|+.+++.+|
T Consensus 218 l~~k~--------~~~e~lf~l~N~~~~~~----k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 218 LSYKE--------KTNEIFFTIFNNFIEND----KQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred ccCCH--------HHHHHHHHHHHHHHHcC----CcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHH
Confidence 75422 33445555554432221 123444444444 45799998 66 46789999999999999
Q ss_pred HHHhhcCCCC---CCcccHHHHHHhccCCccccHHHHHHHHHHHH
Q 007255 203 LKLYTKKVPL---DANVDLEAIATSCNGYVGADLEALCREATMSA 244 (611)
Q Consensus 203 l~~~~~~~~~---~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a 244 (611)
++..+...+. -.+..+..++..+.| ..|.+..++......+
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a 327 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWS 327 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence 9998876443 123346777777665 4666777777665443
No 307
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=1.8e-10 Score=116.30 Aligned_cols=172 Identities=18% Similarity=0.172 Sum_probs=115.8
Q ss_pred hHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEE-------------eecchhhcc
Q 007255 296 RDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF-------------SLSGAELYS 362 (611)
Q Consensus 296 ~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~-------------~~~~~~~~~ 362 (611)
+.+.+.+...+.. .+.++++||+||+|+||+++|.++|..+.|.-. .-+-+|+.-
T Consensus 10 ~~~~~~l~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 10 QRAYDQTVAALDA------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 4556666666552 356788999999999999999999988844210 000111110
Q ss_pred c-----ccc------chHHHHHHHHHHHHhc----CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCC
Q 007255 363 M-----YVG------ESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQA 427 (611)
Q Consensus 363 ~-----~~g------~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 427 (611)
- ..| -.-..++.+.+.+... .-.|++||++|.+ +....|.||+.|+ +++
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m--------------~~~AaNaLLKtLE--EPp 141 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI--------------NRAACNALLKTLE--EPS 141 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh--------------CHHHHHHHHHHhh--CCC
Confidence 0 011 1233455555544332 2249999999977 3567899999999 788
Q ss_pred CCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHH
Q 007255 428 KGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLC 504 (611)
Q Consensus 428 ~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~ 504 (611)
++++||.+|+.++.+-|.+++ |+. .+.|+.|+.++..+.+... .. +..+...++..+.| ++......+
T Consensus 142 ~~~~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~~~~~~~L~~~----~~-~~~~a~~~~~l~~G-~p~~A~~~~ 209 (319)
T PRK08769 142 PGRYLWLISAQPARLPATIRS--RCQ-RLEFKLPPAHEALAWLLAQ----GV-SERAAQEALDAARG-HPGLAAQWL 209 (319)
T ss_pred CCCeEEEEECChhhCchHHHh--hhe-EeeCCCcCHHHHHHHHHHc----CC-ChHHHHHHHHHcCC-CHHHHHHHh
Confidence 899999999999999999998 998 8889999998888777631 11 22334466777777 444333433
No 308
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=3.4e-10 Score=115.38 Aligned_cols=156 Identities=20% Similarity=0.287 Sum_probs=110.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEcccccccccccchHHHHHHHHH
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGAH------------------------LTVISPHSVHKAHVGESEKALREAFS 106 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~f~ 106 (611)
+.+..+||+||+|+|||++|+.+|+.+.+. +..+.+..- ...-....++.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKTIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCCCCHHHHHHHHH
Confidence 356789999999999999999999988542 122211100 01123456677666
Q ss_pred HHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcc
Q 007255 107 QASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFD 186 (611)
Q Consensus 107 ~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~ 186 (611)
.+...+..+...|++||++|.|.. ...+.|++.+++ +++++++|.+|+.++.+.|.+++ |+.
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~----------~aaNaLLK~LEE------Pp~~~~fiL~t~~~~~ll~TI~S--Rc~ 158 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNR----------NAANALLKSLEE------PSGDTVLLLISHQPSRLLPTIKS--RCQ 158 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCH----------HHHHHHHHHHhC------CCCCeEEEEEECChhhCcHHHHh--hce
Confidence 666555555677999999998854 678999999997 34468888999999999999999 985
Q ss_pred eEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccc
Q 007255 187 AEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGA 231 (611)
Q Consensus 187 ~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~ 231 (611)
.+.|++|+.++..+.+...... ..+.....++..++|-.+.
T Consensus 159 -~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~~ 199 (328)
T PRK05707 159 -QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPLR 199 (328)
T ss_pred -eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHHH
Confidence 7999999999998888764321 1222345556666665544
No 309
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.22 E-value=2.4e-11 Score=112.00 Aligned_cols=120 Identities=19% Similarity=0.291 Sum_probs=79.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGA----HLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~----~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
|..++||+||+|||||.+++++|+.+.. +++.++++.+.... .....+..............+..||++||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4468999999999999999999999996 99999999887611 11111222222211111111234999999999
Q ss_pred cCCCCCCC-chhhHHHHHHHHHHHhcCCCC-----CCCCCcEEEEEeecCcc
Q 007255 128 LCPRRDHR-REQDVRIASQLFTLMDSNKPS-----KTSVPHVVVVASTNRVD 173 (611)
Q Consensus 128 l~~~~~~~-~~~~~~~~~~ll~~l~~~~~~-----~~~~~~v~ii~ttn~~~ 173 (611)
..+....+ ......+++.|+..++...-. .....++++|+|+|--.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 98853322 333457889999999874321 12335789999999754
No 310
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.21 E-value=3.6e-12 Score=114.22 Aligned_cols=119 Identities=27% Similarity=0.420 Sum_probs=73.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccc--cccchHHH-HHHHHHHHHhhhhcCCCeEEEEccccccCCC
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA--HVGESEKA-LREAFSQASSHALSGKPSVVFIDEIDALCPR 131 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~--~~~~~~~~-l~~~f~~~~~~~~~~~~~il~IDeid~l~~~ 131 (611)
+|||+||||||||++++.+|+.++.+++.++++..... ..|..... -...|....-.....+++|++|||++...+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~- 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPP- 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--H-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCH-
Confidence 68999999999999999999999999988877643210 00100000 000000000000011478999999987643
Q ss_pred CCCCchhhHHHHHHHHHHHhcCCCC-------CCCCC------cEEEEEeecCcc----cccHHhhccCCc
Q 007255 132 RDHRREQDVRIASQLFTLMDSNKPS-------KTSVP------HVVVVASTNRVD----AIDPALRRSGRF 185 (611)
Q Consensus 132 ~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~~------~v~ii~ttn~~~----~l~~~l~~~~Rf 185 (611)
.++..|+.+++..... ..... ++.+|+|+|+.+ .+++++++ ||
T Consensus 80 ---------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 80 ---------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ---------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 7788888888763211 00111 389999999988 89999998 87
No 311
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.21 E-value=2.3e-10 Score=118.58 Aligned_cols=151 Identities=21% Similarity=0.299 Sum_probs=94.0
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------EEEEccc---
Q 007255 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------LTVISPH--- 87 (611)
Q Consensus 18 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~-------~~~v~~~--- 87 (611)
++++.+-++..+.+...+. ...+++|+||||||||++|+.+|..++.. ++.++.+
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 5677777777777766553 24799999999999999999999988531 2333322
Q ss_pred -cccccc-ccch-----HHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCC------
Q 007255 88 -SVHKAH-VGES-----EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK------ 154 (611)
Q Consensus 88 -~~~~~~-~~~~-----~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~------ 154 (611)
++...+ ++.. ...+..+...+... ..+|.||||||+|..... .+...++.+++...
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~--p~~~~vliIDEINRani~---------kiFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ--PEKKYVFIIDEINRANLS---------KVFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhc--ccCCcEEEEehhhccCHH---------Hhhhhhhhhccccccccccc
Confidence 221111 1100 01223333444322 235799999999865432 33445555555321
Q ss_pred ----------CCCCCCCcEEEEEeecCcc----cccHHhhccCCcceEEEccC-CCHH
Q 007255 155 ----------PSKTSVPHVVVVASTNRVD----AIDPALRRSGRFDAEVEVTV-PTAE 197 (611)
Q Consensus 155 ----------~~~~~~~~v~ii~ttn~~~----~l~~~l~~~~Rf~~~i~~~~-p~~~ 197 (611)
.....+.++.||||+|..+ .+|.+++| ||. .+++.+ ++..
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p~~~~~ 362 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEPGFDTP 362 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecCCCChH
Confidence 1234567899999999987 79999999 886 456655 3443
No 312
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=3e-10 Score=116.60 Aligned_cols=151 Identities=17% Similarity=0.229 Sum_probs=109.5
Q ss_pred cccCC-cHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 007255 19 EAIGG-NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH----------------- 80 (611)
Q Consensus 19 ~~i~G-~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~----------------- 80 (611)
+.|+| ++.+++.|...+.. -+.+..+||+||+|+||+++++.+|+.+.+.
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~ 72 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRI 72 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHH
Confidence 66777 88899999888743 2355678999999999999999999987432
Q ss_pred -------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcC
Q 007255 81 -------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSN 153 (611)
Q Consensus 81 -------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~ 153 (611)
+..+... . .......++++.+.....+..+...|++|||+|.+.. ..++.|++.+++
T Consensus 73 ~~~~hpD~~~i~~~---~--~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~----------~a~NaLLK~LEE- 136 (329)
T PRK08058 73 DSGNHPDVHLVAPD---G--QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA----------SAANSLLKFLEE- 136 (329)
T ss_pred hcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH----------HHHHHHHHHhcC-
Confidence 1111111 0 0112334555555544333344567999999998844 568899999997
Q ss_pred CCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHH
Q 007255 154 KPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKL 205 (611)
Q Consensus 154 ~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~ 205 (611)
++.++++|.+|+.++.+.|.+++ |+. .++|++|+.++..++++.
T Consensus 137 -----Pp~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 -----PSGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred -----CCCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 33457778888888899999999 874 899999999998887764
No 313
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.20 E-value=2.7e-10 Score=113.68 Aligned_cols=67 Identities=34% Similarity=0.506 Sum_probs=47.8
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhC--CcEEeecchhhcc
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE--ASFFSLSGAELYS 362 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~--~~~~~~~~~~~~~ 362 (611)
..+.++||..+++..--.+.. + +-+.-..+++||.||||||||++|-++|+++| .||+.++++++++
T Consensus 22 ~~~GlVGQ~~AReAagiiv~m-I-------k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDM-I-------KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHH-H-------HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred ccccccChHHHHHHHHHHHHH-H-------hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 456899999999987655542 1 11444578999999999999999999999995 7888888877765
No 314
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.19 E-value=2.7e-10 Score=104.36 Aligned_cols=138 Identities=27% Similarity=0.393 Sum_probs=95.0
Q ss_pred CcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------------
Q 007255 23 GNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH---------------------- 80 (611)
Q Consensus 23 G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~---------------------- 80 (611)
|++.+++.|.+.+.. -+.|..+||+||+|+||+++|.++|+.+...
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 788999999888754 2356789999999999999999999987432
Q ss_pred -EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCC
Q 007255 81 -LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTS 159 (611)
Q Consensus 81 -~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 159 (611)
++.++...... .-....++.+..........+..-|++|||+|.|.. ..++.|+..|++ +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~----------~a~NaLLK~LEe------p 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE----------EAQNALLKTLEE------P 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H----------HHHHHHHHHHHS------T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH----------HHHHHHHHHhcC------C
Confidence 22222211100 123455666666665555455677999999998854 779999999998 3
Q ss_pred CCcEEEEEeecCcccccHHhhccCCcceEEEccCC
Q 007255 160 VPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVP 194 (611)
Q Consensus 160 ~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p 194 (611)
+.++.+|.+|+.++.+-|.+++ |+. .+.|++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 4478999999999999999999 884 7777764
No 315
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=4.3e-10 Score=113.41 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=114.6
Q ss_pred hHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-----------------------E
Q 007255 296 RDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS-----------------------F 352 (611)
Q Consensus 296 ~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~-----------------------~ 352 (611)
....+.+...+. ..+.++++||+||.|+||+++|+++|..+.|. +
T Consensus 9 ~~~~~~l~~~~~------------~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 9 VPVWQNWKAGLD------------AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHH------------cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 455566666655 23667899999999999999999999988442 2
Q ss_pred EeecchhhccccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCC
Q 007255 353 FSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAK 428 (611)
Q Consensus 353 ~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 428 (611)
+.+.+.. .++. -....++.+-+.+.. ..-.|++||++|.+ +....|.||+.|+ ++++
T Consensus 77 ~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m--------------~~~AaNaLLKtLE--EPp~ 137 (319)
T PRK06090 77 HVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAM--------------NESASNALLKTLE--EPAP 137 (319)
T ss_pred EEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhh--------------CHHHHHHHHHHhc--CCCC
Confidence 2222110 0000 122345555444432 22359999999977 3567899999999 7889
Q ss_pred CeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHH
Q 007255 429 GILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLC 504 (611)
Q Consensus 429 ~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~ 504 (611)
++++|.+|+.|+.+-|.+++ |+. .+.|+.|+.++..+.+... + .. ....++..+.| ++.....+.
T Consensus 138 ~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~~--~--~~---~~~~~l~l~~G-~p~~A~~~~ 202 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKGQ--G--IT---VPAYALKLNMG-SPLKTLAMM 202 (319)
T ss_pred CeEEEEEECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHHc--C--Cc---hHHHHHHHcCC-CHHHHHHHh
Confidence 99999999999999999998 998 8899999999888887632 1 11 12355566666 444444443
No 316
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.18 E-value=8.8e-10 Score=122.71 Aligned_cols=163 Identities=22% Similarity=0.296 Sum_probs=107.5
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC------------------
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG------------------ 78 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~------------------ 78 (611)
.|.+|+|++.++..|.-+...| ...++||.|++|||||++++++++.+.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4689999999998886655432 125799999999999999999999872
Q ss_pred -----------------CcEEEEcccccccccccchHHHHHHHHHHH-----HhhhhcCCCeEEEEccccccCCCCCCCc
Q 007255 79 -----------------AHLTVISPHSVHKAHVGESEKALREAFSQA-----SSHALSGKPSVVFIDEIDALCPRRDHRR 136 (611)
Q Consensus 79 -----------------~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~-----~~~~~~~~~~il~IDeid~l~~~~~~~~ 136 (611)
.+|+.+.++.......|... +...+... .........+||||||++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d--~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~------ 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD--IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD------ 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc--HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH------
Confidence 34444444332222222210 11111100 0000122457999999998855
Q ss_pred hhhHHHHHHHHHHHhcCC-------CCCCCCCcEEEEEeecCc-ccccHHhhccCCcceEEEccCCC-HHHHHHHHHHh
Q 007255 137 EQDVRIASQLFTLMDSNK-------PSKTSVPHVVVVASTNRV-DAIDPALRRSGRFDAEVEVTVPT-AEERFEILKLY 206 (611)
Q Consensus 137 ~~~~~~~~~ll~~l~~~~-------~~~~~~~~v~ii~ttn~~-~~l~~~l~~~~Rf~~~i~~~~p~-~~~r~~Il~~~ 206 (611)
..+..|+..|+... .....+.++.+|+|+|+. ..+.++|.. ||...+.++.+. .+++.++++..
T Consensus 141 ----~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 141 ----HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred ----HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 67888999987542 111223568999999975 368899998 999888888774 57777777653
No 317
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.17 E-value=2.5e-10 Score=118.39 Aligned_cols=140 Identities=17% Similarity=0.305 Sum_probs=87.6
Q ss_pred cccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc-------EEeecc----
Q 007255 289 WEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS-------FFSLSG---- 357 (611)
Q Consensus 289 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~-------~~~~~~---- 357 (611)
++++.+.+...+.+...+. ..++++|+||||||||++|+.+|..+... ++.+++
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 3455555665555554443 24689999999999999999999988431 233332
Q ss_pred hhhccccccc----h--HHHHHHHHHHHHh--cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhc-------
Q 007255 358 AELYSMYVGE----S--EALLRNTFQRARL--AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD------- 422 (611)
Q Consensus 358 ~~~~~~~~g~----~--~~~~~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~------- 422 (611)
.++...+... . ...+..++..|+. ..|.++||||++.--. .+++..++..|+
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani-------------~kiFGel~~lLE~~~rg~~ 305 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL-------------SKVFGEVMMLMEHDKRGEN 305 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH-------------HHhhhhhhhhccccccccc
Confidence 2333222111 0 1233445555654 3578999999986421 223333333333
Q ss_pred -------------CCCCCCCeEEEEecCCCc----ccchhccCCCCccceeecC
Q 007255 423 -------------GLEQAKGILVLAATNRPH----AIDAALMRPGRFDLVLYVP 459 (611)
Q Consensus 423 -------------~~~~~~~~~vI~~tn~~~----~ld~al~r~gRf~~~i~~~ 459 (611)
.+..+.++.||||+|..+ .+|.|++| ||. .|.+.
T Consensus 306 ~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~ 356 (459)
T PRK11331 306 WSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIE 356 (459)
T ss_pred cceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEec
Confidence 234567899999999988 79999999 997 45554
No 318
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.16 E-value=2.4e-10 Score=127.19 Aligned_cols=156 Identities=27% Similarity=0.372 Sum_probs=103.5
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-------------------
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA------------------- 348 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~------------------- 348 (611)
.|.+|+|++.++..+.-.... +...++||.||+|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~-------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD-------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC-------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 478999999999888766553 122479999999999999999999887
Q ss_pred ----------------CCcEEeecchhhccccccch--HHHHH---HHHH--HHHhcCCcEEEEcccccccccCCCCCCC
Q 007255 349 ----------------EASFFSLSGAELYSMYVGES--EALLR---NTFQ--RARLAAPSIIFFDEADVVGAKRGGSSST 405 (611)
Q Consensus 349 ----------------~~~~~~~~~~~~~~~~~g~~--~~~~~---~~~~--~a~~~~p~il~iDeid~l~~~~~~~~~~ 405 (611)
..+|+.+..+.......|.. +..+. ..+. .....+..||||||++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l---------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLL---------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhC----------
Confidence 23555554443322233321 11110 0000 000113359999999987
Q ss_pred CcchhHHHHHHHHHHhcCC-----------CCCCCeEEEEecCCC-cccchhccCCCCccceeecCCCC-HHHHHHHHHH
Q 007255 406 SITVGERLLSTLLTEMDGL-----------EQAKGILVLAATNRP-HAIDAALMRPGRFDLVLYVPPPD-LEARHEILRV 472 (611)
Q Consensus 406 ~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~~tn~~-~~ld~al~r~gRf~~~i~~~~p~-~~~r~~il~~ 472 (611)
....++.|+..|+.- ....++++|+|+|.. ..+.++|+. ||+.+|.++.|. .+++.++++.
T Consensus 139 ----~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 139 ----DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 356778888888631 112468999988853 358889998 999989998764 5777777764
No 319
>PRK06620 hypothetical protein; Validated
Probab=99.16 E-value=7.8e-10 Score=106.09 Aligned_cols=143 Identities=14% Similarity=0.183 Sum_probs=89.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCC
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD 133 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~ 133 (611)
++++|+||||||||++++++++..+..++ +.... ....+ ....+|+|||+|.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~-----------~~~~~---------~~~d~lliDdi~~~~---- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF-----------NEEIL---------EKYNAFIIEDIENWQ---- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh-----------chhHH---------hcCCEEEEeccccch----
Confidence 68999999999999999999988765322 21110 00111 123589999998441
Q ss_pred CCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccc--ccHHhhccCCcc--eEEEccCCCHHHHHHHHHHhhcC
Q 007255 134 HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA--IDPALRRSGRFD--AEVEVTVPTAEERFEILKLYTKK 209 (611)
Q Consensus 134 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~--l~~~l~~~~Rf~--~~i~~~~p~~~~r~~Il~~~~~~ 209 (611)
. ..++.+++..... +..++++++..|.. + +++++ |+. ..+.+.+|+.+++..+++.....
T Consensus 99 -----~----~~lf~l~N~~~e~----g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 99 -----E----PALLHIFNIINEK----QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred -----H----HHHHHHHHHHHhc----CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 1 1333333322211 13566666655553 5 88998 764 47899999999999999887765
Q ss_pred CCCCC-cccHHHHHHhccCCccccHHHHHHH
Q 007255 210 VPLDA-NVDLEAIATSCNGYVGADLEALCRE 239 (611)
Q Consensus 210 ~~~~~-~~~~~~la~~~~g~~~~dl~~l~~~ 239 (611)
.++.- +.-++.++..+.| +.+.+.+++..
T Consensus 163 ~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 163 SSVTISRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred cCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 54432 3347777777654 34445555554
No 320
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.15 E-value=1.9e-11 Score=104.08 Aligned_cols=117 Identities=25% Similarity=0.345 Sum_probs=63.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccc-ccc-cccccchHHHHH-HHHHHHHhhhhcCCCeEEEEccccccCCC
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH-SVH-KAHVGESEKALR-EAFSQASSHALSGKPSVVFIDEIDALCPR 131 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~-~~~-~~~~~~~~~~l~-~~f~~~~~~~~~~~~~il~IDeid~l~~~ 131 (611)
|+||.|+||+|||++++++|+.++..+..|.+. ++. ....|...-... ..|.-. ..+.. ..|+++||++...+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~-~GPif--~~ill~DEiNrapp- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFR-PGPIF--TNILLADEINRAPP- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEE-E-TT---SSEEEEETGGGS-H-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEee-cChhh--hceeeecccccCCH-
Confidence 799999999999999999999999999887653 221 111110000000 000000 00000 24999999998765
Q ss_pred CCCCchhhHHHHHHHHHHHhcCCCC-----CCCCCcEEEEEeecCcc-----cccHHhhccCCcc
Q 007255 132 RDHRREQDVRIASQLFTLMDSNKPS-----KTSVPHVVVVASTNRVD-----AIDPALRRSGRFD 186 (611)
Q Consensus 132 ~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~~~v~ii~ttn~~~-----~l~~~l~~~~Rf~ 186 (611)
+.++.|++.|.+..-+ ...+..++||+|.|+.+ .+++++.. ||.
T Consensus 77 ---------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 77 ---------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp ---------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred ---------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 7799999999874322 22345689999999966 78888887 874
No 321
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.13 E-value=1.2e-10 Score=107.29 Aligned_cols=114 Identities=23% Similarity=0.311 Sum_probs=76.6
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHhCC----cEEeecchhhccccccchHHHHHHHHHHH----HhcCCcEEEEccccc
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAAEA----SFFSLSGAELYSMYVGESEALLRNTFQRA----RLAAPSIIFFDEADV 394 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~ 394 (611)
|..++||+||+|||||.+|+++|..+.. +++.++++.+... ++....+..+...+ ......|||+||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4457999999999999999999999996 9999999988761 11111122222111 111223999999999
Q ss_pred ccccCCCCCCCCcchhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCCcc
Q 007255 395 VGAKRGGSSSTSITVGERLLSTLLTEMDGLE---------QAKGILVLAATNRPHA 441 (611)
Q Consensus 395 l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~~tn~~~~ 441 (611)
.... .+...+.....+.+.||+.||+.. .-++++||+|+|.-..
T Consensus 80 a~~~---~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 80 AHPS---NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp CSHT---TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred cccc---ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 9765 122223334578899999997531 1246899999997654
No 322
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.13 E-value=3.4e-11 Score=112.06 Aligned_cols=127 Identities=26% Similarity=0.297 Sum_probs=70.8
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----EEEEcc----c-
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH----LTVISP----H- 87 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~----~~~v~~----~- 87 (611)
+|++|+|++.+|..|.-+..- ..|+|++||||||||++++.+...+..- ...+.. .
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 478999999999999776421 3699999999999999999998766310 000000 0
Q ss_pred -----------ccccccccchHHHHHHHHHHHHh----hhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhc
Q 007255 88 -----------SVHKAHVGESEKALREAFSQASS----HALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDS 152 (611)
Q Consensus 88 -----------~~~~~~~~~~~~~l~~~f~~~~~----~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~ 152 (611)
-+.......+. ..++..... .......+|||+||+..+ ...++..|+..++.
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~---~~liGgg~~~~PGeislAh~GVLflDE~~ef----------~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASE---AALIGGGRPPRPGEISLAHRGVLFLDELNEF----------DRSVLDALRQPLED 132 (206)
T ss_dssp -S---EEEE---EEEE-TT--H---HHHHEEGGGEEE-CGGGGTTSEEEECETTTS-----------HHHHHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCH---HHHhCCCcCCCcCHHHHhcCCEEEechhhhc----------CHHHHHHHHHHHHC
Confidence 00000011111 111111100 001234679999999765 33788899999876
Q ss_pred CC-------CCCCCCCcEEEEEeecC
Q 007255 153 NK-------PSKTSVPHVVVVASTNR 171 (611)
Q Consensus 153 ~~-------~~~~~~~~v~ii~ttn~ 171 (611)
.. ...+.+.++++|+|+|+
T Consensus 133 g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 133 GEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp SBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred CeEEEEECCceEEEecccEEEEEecc
Confidence 32 12223457899999998
No 323
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.13 E-value=3.1e-10 Score=118.65 Aligned_cols=160 Identities=18% Similarity=0.219 Sum_probs=95.6
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEccc-cccccccc
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA--HLTVISPH-SVHKAHVG 95 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~~~-~~~~~~~~ 95 (611)
..++|.+++++.+..++. ...++||.||||||||++|++++..++. +|..+.+. .......|
T Consensus 20 ~~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hhccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 357888888888777653 3479999999999999999999998753 33333222 11111222
Q ss_pred ch-HHHH--HHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCC----CCCCCCcEEEEEe
Q 007255 96 ES-EKAL--REAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP----SKTSVPHVVVVAS 168 (611)
Q Consensus 96 ~~-~~~l--~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~----~~~~~~~v~ii~t 168 (611)
.. .... ...|.....+. .....+||+|||+.+.+ ..++.|+..|++... .....+.-+++++
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~-L~~A~lLfLDEI~rasp----------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A 153 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGY-LPEAEIVFLDEIWKAGP----------AILNTLLTAINERRFRNGAHEEKIPMRLLVTA 153 (498)
T ss_pred cHHHhhhhhcCchhhhcCCc-cccccEEeecccccCCH----------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE
Confidence 11 0110 11121111110 00123899999987654 778999999965331 1111222344555
Q ss_pred ecCcc---cccHHhhccCCcceEEEccCCC-HHHHHHHHHHh
Q 007255 169 TNRVD---AIDPALRRSGRFDAEVEVTVPT-AEERFEILKLY 206 (611)
Q Consensus 169 tn~~~---~l~~~l~~~~Rf~~~i~~~~p~-~~~r~~Il~~~ 206 (611)
||+.. ...+++.. ||...+.+|+|+ .++..+++...
T Consensus 154 TN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 154 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 57532 23358887 998899999997 46667777653
No 324
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.12 E-value=3.9e-10 Score=116.21 Aligned_cols=133 Identities=27% Similarity=0.343 Sum_probs=90.2
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccc--cccchHHHHH----HHHHHHHh--cCC--cEEEEcccc
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM--YVGESEALLR----NTFQRARL--AAP--SIIFFDEAD 393 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~--~~g~~~~~~~----~~~~~a~~--~~p--~il~iDeid 393 (611)
.+++||.||||||||++|+++|..++.+|+.+.+...... ..|...-..+ ..|..... ... +|+|+|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 3579999999999999999999999999999988644332 1221111110 00000000 001 399999998
Q ss_pred cccccCCCCCCCCcchhHHHHHHHHHHhcC----------CCCCCCeEEEEecCC-----CcccchhccCCCCccceeec
Q 007255 394 VVGAKRGGSSSTSITVGERLLSTLLTEMDG----------LEQAKGILVLAATNR-----PHAIDAALMRPGRFDLVLYV 458 (611)
Q Consensus 394 ~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~----------~~~~~~~~vI~~tn~-----~~~ld~al~r~gRf~~~i~~ 458 (611)
.. ...+.+.|+..|+. ..-+..+++|+|+|. -+.+++|+++ ||...+++
T Consensus 123 ra--------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v 186 (329)
T COG0714 123 RA--------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYV 186 (329)
T ss_pred cC--------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEec
Confidence 65 35677888888874 234467889988893 3468999999 99889999
Q ss_pred CCC-CHHHHHHHHHH
Q 007255 459 PPP-DLEARHEILRV 472 (611)
Q Consensus 459 ~~p-~~~~r~~il~~ 472 (611)
+.| +.++...+...
T Consensus 187 ~yp~~~~e~~~i~~~ 201 (329)
T COG0714 187 DYPDSEEEERIILAR 201 (329)
T ss_pred CCCCchHHHHHHHHh
Confidence 999 55555555543
No 325
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=2.9e-09 Score=116.46 Aligned_cols=206 Identities=11% Similarity=0.087 Sum_probs=123.3
Q ss_pred ccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEe-ecch
Q 007255 280 VTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFS-LSGA 358 (611)
Q Consensus 280 ~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~-~~~~ 358 (611)
+...+.+.++++++|++...+.+..++.... ++..+.+.++|+||||||||++++++|.+++..+.. .++.
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv 145 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT 145 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh
Confidence 3445567789999999999998888876311 122344558999999999999999999999866544 2222
Q ss_pred hhc---ccc------------ccchHHHHHHHHHHHHh----------cCCcEEEEcccccccccCCCCCCCCcchhHHH
Q 007255 359 ELY---SMY------------VGESEALLRNTFQRARL----------AAPSIIFFDEADVVGAKRGGSSSTSITVGERL 413 (611)
Q Consensus 359 ~~~---~~~------------~g~~~~~~~~~~~~a~~----------~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~ 413 (611)
... ..| .......++.++..+.. ....||||||++.++.. ..+.
T Consensus 146 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~~~~ 214 (637)
T TIGR00602 146 LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------DTRA 214 (637)
T ss_pred hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------hHHH
Confidence 110 000 01122334455554431 23459999999987532 1223
Q ss_pred HHHHHH-HhcCCCCCCCeEEEEecCC-Cc--------------ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCC
Q 007255 414 LSTLLT-EMDGLEQAKGILVLAATNR-PH--------------AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNM 477 (611)
Q Consensus 414 ~~~ll~-~l~~~~~~~~~~vI~~tn~-~~--------------~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~ 477 (611)
+..+|. ... ..+++.+|++++. |. .+.++++...|+. +|.|++.+.....+.|+..+...
T Consensus 215 lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 215 LHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred HHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhh
Confidence 444544 221 2345555555542 22 1336676422454 79999999999777777665432
Q ss_pred CC--------CCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007255 478 KV--------GDDVDLRSIAEETELFTGAELEGLCREAGIVAL 512 (611)
Q Consensus 478 ~~--------~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~ 512 (611)
.. .....+..++..+.| ||+.++......+.
T Consensus 291 ~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~ 329 (637)
T TIGR00602 291 AKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSS 329 (637)
T ss_pred hhccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHh
Confidence 11 122356677775554 88887776555443
No 326
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.09 E-value=1.6e-09 Score=111.32 Aligned_cols=173 Identities=22% Similarity=0.315 Sum_probs=111.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEcccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEID 126 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid 126 (611)
.-++++||||+|+|||+|+++++++. +..++++++..+...........--.-|++.. .-.+++|||++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y------~~dlllIDDiq 185 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY------SLDLLLIDDIQ 185 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh------ccCeeeechHh
Confidence 45899999999999999999998876 23567777666544332221111112232222 13489999999
Q ss_pred ccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccc---ccHHhhccCCcc--eEEEccCCCHHHHHH
Q 007255 127 ALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA---IDPALRRSGRFD--AEVEVTVPTAEERFE 201 (611)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~---l~~~l~~~~Rf~--~~i~~~~p~~~~r~~ 201 (611)
.+.... .++..++..+....... +-+++.+...|.. +.|+|++ ||. ..+.+.+|+.+.|..
T Consensus 186 ~l~gk~--------~~qeefFh~FN~l~~~~----kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 186 FLAGKE--------RTQEEFFHTFNALLENG----KQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred HhcCCh--------hHHHHHHHHHHHHHhcC----CEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHH
Confidence 887643 44566666665543322 2355555555664 4599999 664 678999999999999
Q ss_pred HHHHhhcCCCCCCcc-cHHHHHHhccCCccccHHHHHHHHHHHHh
Q 007255 202 ILKLYTKKVPLDANV-DLEAIATSCNGYVGADLEALCREATMSAV 245 (611)
Q Consensus 202 Il~~~~~~~~~~~~~-~~~~la~~~~g~~~~dl~~l~~~a~~~a~ 245 (611)
|++......++.-.. -...++.+.. -+.++++..+......+.
T Consensus 252 iL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~ 295 (408)
T COG0593 252 ILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFAL 295 (408)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHH
Confidence 999977766655433 3566666544 345666666665554443
No 327
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.09 E-value=1e-10 Score=104.76 Aligned_cols=110 Identities=25% Similarity=0.370 Sum_probs=70.9
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEeecchhh------ccccccchH--HHHHHHHHHHHhcCCcEEEEcccccccc
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL------YSMYVGESE--ALLRNTFQRARLAAPSIIFFDEADVVGA 397 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~------~~~~~g~~~--~~~~~~~~~a~~~~p~il~iDeid~l~~ 397 (611)
++||+||||||||++|+.+|..++.+++.+++... .+.|.-... ......+-.+. ..+.|++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence 47999999999999999999999999988877543 222221100 00000000000 15679999999865
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHhcCCC-----------CCC------CeEEEEecCCCc----ccchhccCCCCc
Q 007255 398 KRGGSSSTSITVGERLLSTLLTEMDGLE-----------QAK------GILVLAATNRPH----AIDAALMRPGRF 452 (611)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~------~~~vI~~tn~~~----~ld~al~r~gRf 452 (611)
...++..|+..++.-. ... ++.+|+|+|.++ .+++++++ ||
T Consensus 78 ------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 2556677777766421 011 389999999988 89999999 87
No 328
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.09 E-value=5.4e-10 Score=99.75 Aligned_cols=126 Identities=30% Similarity=0.351 Sum_probs=82.4
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCc---EEeecchhhccc--------------cccchHHHHHHHHHHHHhcCCcE
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEAS---FFSLSGAELYSM--------------YVGESEALLRNTFQRARLAAPSI 386 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~---~~~~~~~~~~~~--------------~~g~~~~~~~~~~~~a~~~~p~i 386 (611)
+..++|+||||||||++++.+|..+... ++.++++..... ............+..++...+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3578999999999999999999999775 888887755432 22334556778888888877899
Q ss_pred EEEcccccccccCCCCCCCCcchhHHHHHHH--HHHhcCCCCCCCeEEEEecCC-CcccchhccCCCCccceeecCCC
Q 007255 387 IFFDEADVVGAKRGGSSSTSITVGERLLSTL--LTEMDGLEQAKGILVLAATNR-PHAIDAALMRPGRFDLVLYVPPP 461 (611)
Q Consensus 387 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~l--l~~l~~~~~~~~~~vI~~tn~-~~~ld~al~r~gRf~~~i~~~~p 461 (611)
++|||++.+..... ....... ..............+|+++|. ....+..+.+ |++..+.++.+
T Consensus 82 iiiDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQ----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHH----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 99999998853310 0000000 000011124556788888886 3334444444 88878777654
No 329
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=5.7e-09 Score=105.44 Aligned_cols=174 Identities=18% Similarity=0.260 Sum_probs=117.1
Q ss_pred cHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------------------EE
Q 007255 24 NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH---------------------LT 82 (611)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~---------------------~~ 82 (611)
++.+.+.|...+.. -+.|..+||+||+|+||+++|.++|+.+.+. +.
T Consensus 9 ~~~~~~~l~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 9 QQRAYDQTVAALDA------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred HHHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE
Confidence 55666777666532 2355679999999999999999999887432 11
Q ss_pred EE--cccccccc-cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCC
Q 007255 83 VI--SPHSVHKA-HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTS 159 (611)
Q Consensus 83 ~v--~~~~~~~~-~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 159 (611)
.+ .+..-... ...-....++++.+.....+..+...|++||++|.|.. ...+.|++.+++ +
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~----------~AaNaLLKtLEE------P 140 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR----------AACNALLKTLEE------P 140 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH----------HHHHHHHHHhhC------C
Confidence 11 01000000 00112445666666555555455567999999998854 668999999997 4
Q ss_pred CCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccH
Q 007255 160 VPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADL 233 (611)
Q Consensus 160 ~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl 233 (611)
+++++||.+|+.++.+.|.++| |+. .+.|++|+.++..+.+... ..+. .+...++..++|..+..+
T Consensus 141 p~~~~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~~~~~~~L~~~----~~~~-~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 141 SPGRYLWLISAQPARLPATIRS--RCQ-RLEFKLPPAHEALAWLLAQ----GVSE-RAAQEALDAARGHPGLAA 206 (319)
T ss_pred CCCCeEEEEECChhhCchHHHh--hhe-EeeCCCcCHHHHHHHHHHc----CCCh-HHHHHHHHHcCCCHHHHH
Confidence 4467888889999999999999 984 8899999999888887642 2221 224456666777655443
No 330
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.08 E-value=8.1e-09 Score=103.56 Aligned_cols=195 Identities=19% Similarity=0.245 Sum_probs=112.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-cEEE---Eccc----c----ccc----ccccc-hHHHHHHHHHHHHhhhhcC
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGA-HLTV---ISPH----S----VHK----AHVGE-SEKALREAFSQASSHALSG 115 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~-~~~~---v~~~----~----~~~----~~~~~-~~~~l~~~f~~~~~~~~~~ 115 (611)
+..++|+||+|+|||++++.+++.+.. .+.. +++. + +.. ...+. ....+..+..........+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 346899999999999999999998863 2221 1111 0 000 00011 1111222222222222345
Q ss_pred CCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC--cccc----cHHhhccCCcceEE
Q 007255 116 KPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR--VDAI----DPALRRSGRFDAEV 189 (611)
Q Consensus 116 ~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~--~~~l----~~~l~~~~Rf~~~i 189 (611)
++.+|+|||++.+.+ .....+..+.+ ..... ...+.++.+..+ .+.+ ...+.+ |+...+
T Consensus 123 ~~~vliiDe~~~l~~----------~~~~~l~~l~~-~~~~~--~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 123 KRALLVVDEAQNLTP----------ELLEELRMLSN-FQTDN--AKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CCeEEEEECcccCCH----------HHHHHHHHHhC-cccCC--CCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 678999999998743 22233322222 11111 112333333222 1122 123555 777789
Q ss_pred EccCCCHHHHHHHHHHhhcCCCC-----CCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccccccchhHHH
Q 007255 190 EVTVPTAEERFEILKLYTKKVPL-----DANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMED 264 (611)
Q Consensus 190 ~~~~p~~~~r~~Il~~~~~~~~~-----~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed 264 (611)
++++++.++..+++...+...+. -.+..++.+...+.|... .+..++..+...+..+..+ .++.++
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~~~~--------~i~~~~ 258 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLEEKR--------EIGGEE 258 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHcCCC--------CCCHHH
Confidence 99999999999999988764432 123457888899999864 4999999998877664332 467777
Q ss_pred HHHHHhc
Q 007255 265 WRHARSV 271 (611)
Q Consensus 265 ~~~a~~~ 271 (611)
+..+...
T Consensus 259 v~~~~~~ 265 (269)
T TIGR03015 259 VREVIAE 265 (269)
T ss_pred HHHHHHH
Confidence 7666544
No 331
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=7.6e-09 Score=104.70 Aligned_cols=168 Identities=16% Similarity=0.218 Sum_probs=116.8
Q ss_pred cHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------------------
Q 007255 24 NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH----------------------- 80 (611)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~----------------------- 80 (611)
+....+.|...+.. -+.+..+||+||+|+||+++|+.+|+.+.+.
T Consensus 7 ~~~~~~~l~~~~~~------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 7 LQPTYQQITQAFQQ------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred hHHHHHHHHHHHHc------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45556666665532 2346789999999999999999999988542
Q ss_pred -EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCC
Q 007255 81 -LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTS 159 (611)
Q Consensus 81 -~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 159 (611)
+..+.+. ....-....++++.+.....+..+...|++||++|.|.. ...+.|++.+++ +
T Consensus 75 D~~~i~p~----~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~----------~AaNaLLKtLEE------P 134 (325)
T PRK06871 75 DFHILEPI----DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTE----------AAANALLKTLEE------P 134 (325)
T ss_pred CEEEEccc----cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCH----------HHHHHHHHHhcC------C
Confidence 1111110 001123456666666666555556667999999999854 678999999997 5
Q ss_pred CCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCcc
Q 007255 160 VPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVG 230 (611)
Q Consensus 160 ~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~ 230 (611)
++++++|.+|+.++.+.|.++| |+. .+.|++|+.++..+.+..... ........++..+.|..+
T Consensus 135 p~~~~fiL~t~~~~~llpTI~S--RC~-~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 135 RPNTYFLLQADLSAALLPTIYS--RCQ-TWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPL 198 (325)
T ss_pred CCCeEEEEEECChHhCchHHHh--hce-EEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHH
Confidence 5578899999999999999999 984 899999999999888876432 112124444555555444
No 332
>PRK04132 replication factor C small subunit; Provisional
Probab=99.07 E-value=2.2e-09 Score=120.35 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=115.7
Q ss_pred ceEEEEc--CCCCcHHHHHHHHHHHh-----CCcEEEEcccccccccccchHHHHHHHHHHHHhhhhc--CCCeEEEEcc
Q 007255 54 RGLLLYG--PPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALS--GKPSVVFIDE 124 (611)
Q Consensus 54 ~~iLl~G--p~GtGKT~la~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~--~~~~il~IDe 124 (611)
-+-+..| |++.||||+|+++|+++ +.+++.+|+++..+ ...++.+.+........ .+..|+||||
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDE 638 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDE 638 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEEC
Confidence 4556779 99999999999999998 45799999987422 12344444443322111 1346999999
Q ss_pred ccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHH
Q 007255 125 IDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILK 204 (611)
Q Consensus 125 id~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~ 204 (611)
+|.|.. ..++.|+..|+... .++.+|++||+++.+.+++++ || ..+.|++|+.++....++
T Consensus 639 aD~Lt~----------~AQnALLk~lEep~------~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 639 ADALTQ----------DAQQALRRTMEMFS------SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred cccCCH----------HHHHHHHHHhhCCC------CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHH
Confidence 999854 56889999999732 357899999999999999998 88 489999999999999998
Q ss_pred HhhcCCCCC-CcccHHHHHHhccCCccccH
Q 007255 205 LYTKKVPLD-ANVDLEAIATSCNGYVGADL 233 (611)
Q Consensus 205 ~~~~~~~~~-~~~~~~~la~~~~g~~~~dl 233 (611)
..+...++. .+..+..++..++|-....+
T Consensus 700 ~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 700 YIAENEGLELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 887755443 23458888888887654444
No 333
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.06 E-value=2.3e-08 Score=95.10 Aligned_cols=185 Identities=22% Similarity=0.290 Sum_probs=126.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---c------------
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA---H------------ 80 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~---~------------ 80 (611)
+.++.+.+.++....|...... .--.|+++|||+|+||-|.+.++.+++-. +
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred chhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 5567788888877777665421 11269999999999999999999998721 1
Q ss_pred ------EEEEccc---ccccccccchHH-HHHHHHHHHHhhhh---cC--CCeEEEEccccccCCCCCCCchhhHHHHHH
Q 007255 81 ------LTVISPH---SVHKAHVGESEK-ALREAFSQASSHAL---SG--KPSVVFIDEIDALCPRRDHRREQDVRIASQ 145 (611)
Q Consensus 81 ------~~~v~~~---~~~~~~~~~~~~-~l~~~f~~~~~~~~---~~--~~~il~IDeid~l~~~~~~~~~~~~~~~~~ 145 (611)
+-+++.. ++.....|..++ .++++.++..+... .+ .-.|++|.|+|.|.. +.+..
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~----------dAQ~a 146 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR----------DAQHA 146 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH----------HHHHH
Confidence 0011100 011112233333 34555555443221 11 124899999998854 67889
Q ss_pred HHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc-ccHHHHHHh
Q 007255 146 LFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATS 224 (611)
Q Consensus 146 ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~ 224 (611)
|.+.|+.+.. ++.+|..||..+.+-+++++ |+. .+.+|.|+.++...+++..+++.++... ..+..+++.
T Consensus 147 LRRTMEkYs~------~~RlIl~cns~SriIepIrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~k 217 (351)
T KOG2035|consen 147 LRRTMEKYSS------NCRLILVCNSTSRIIEPIRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEK 217 (351)
T ss_pred HHHHHHHHhc------CceEEEEecCcccchhHHhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 9999987654 46788889999999999999 874 7899999999999999999987776533 346777777
Q ss_pred ccCCcccc
Q 007255 225 CNGYVGAD 232 (611)
Q Consensus 225 ~~g~~~~d 232 (611)
++|.-.+.
T Consensus 218 S~~nLRrA 225 (351)
T KOG2035|consen 218 SNRNLRRA 225 (351)
T ss_pred hcccHHHH
Confidence 77654443
No 334
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.06 E-value=5.4e-09 Score=104.54 Aligned_cols=78 Identities=29% Similarity=0.395 Sum_probs=50.1
Q ss_pred CeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC------------cccccHHhhccCC
Q 007255 117 PSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR------------VDAIDPALRRSGR 184 (611)
Q Consensus 117 ~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~------------~~~l~~~l~~~~R 184 (611)
|+||||||+|.| +.+..+.|.+.++..- .++ +|.+||+ |..++..|+. |
T Consensus 279 pGVLFIDEvHmL----------DiEcFsfLnralEs~~------sPi-iIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHML----------DIECFSFLNRALESEL------SPI-IILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGS----------BHHHHHHHHHHHTSTT--------E-EEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhc----------cHHHHHHHHHHhcCCC------CcE-EEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 789999999987 3356677777777522 134 4555664 4577889988 8
Q ss_pred cceEEEccCCCHHHHHHHHHHhhcCCCCCC
Q 007255 185 FDAEVEVTVPTAEERFEILKLYTKKVPLDA 214 (611)
Q Consensus 185 f~~~i~~~~p~~~~r~~Il~~~~~~~~~~~ 214 (611)
+. .|...+++.++..+|++.+++.....-
T Consensus 340 ll-II~t~py~~~ei~~Il~iR~~~E~v~i 368 (398)
T PF06068_consen 340 LL-IIRTKPYSEEEIKQILKIRAKEEDVEI 368 (398)
T ss_dssp EE-EEEE----HHHHHHHHHHHHHHCT--B
T ss_pred cE-EEECCCCCHHHHHHHHHhhhhhhcCcC
Confidence 74 889999999999999999987765543
No 335
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1e-09 Score=121.94 Aligned_cols=147 Identities=22% Similarity=0.300 Sum_probs=109.7
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEeecchhhcc--ccccchHHHHHHHHHHHH-hcCCcEEE
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSLSGAELYS--MYVGESEALLRNTFQRAR-LAAPSIIF 388 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~a~-~~~p~il~ 388 (611)
+..++-+|+|.||+|||.++.-+|+.. +..++.++...+.. ++.|+.+..++.+.+.+. .....|||
T Consensus 206 rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILf 285 (898)
T KOG1051|consen 206 KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILF 285 (898)
T ss_pred cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 334789999999999999999999877 45677777765543 689999999999999988 44566999
Q ss_pred EcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCc-----ccchhccCCCCccceeecCCCCH
Q 007255 389 FDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPH-----AIDAALMRPGRFDLVLYVPPPDL 463 (611)
Q Consensus 389 iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~-----~ld~al~r~gRf~~~i~~~~p~~ 463 (611)
|||+|.+.+.... .+ .....+ +|+.+ ...+++.+||||+... +-||++-| ||+ .+.++.|+.
T Consensus 286 igelh~lvg~g~~--~~----~~d~~n-lLkp~---L~rg~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~ 352 (898)
T KOG1051|consen 286 LGELHWLVGSGSN--YG----AIDAAN-LLKPL---LARGGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSV 352 (898)
T ss_pred ecceeeeecCCCc--ch----HHHHHH-hhHHH---HhcCCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcc
Confidence 9999999876533 11 112222 23332 2555699999988433 46999999 999 788999999
Q ss_pred HHHHHHHHHHhcCCCCCC
Q 007255 464 EARHEILRVHTRNMKVGD 481 (611)
Q Consensus 464 ~~r~~il~~~~~~~~~~~ 481 (611)
+....|++.....+..++
T Consensus 353 ~~~~~iL~~l~~~~e~~h 370 (898)
T KOG1051|consen 353 ENLSLILPGLSERYEVHH 370 (898)
T ss_pred cchhhhhhhhhhhhcccc
Confidence 888888887666654443
No 336
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.5e-09 Score=104.14 Aligned_cols=83 Identities=25% Similarity=0.400 Sum_probs=62.2
Q ss_pred cEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--------CCCCeEEEEec----CCCcccchhccCCCCc
Q 007255 385 SIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--------QAKGILVLAAT----NRPHAIDAALMRPGRF 452 (611)
Q Consensus 385 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~vI~~t----n~~~~ld~al~r~gRf 452 (611)
.|+||||||.++.+.+.++ .+-...-++..||-.++|.. ..+.++||++. ..|++|-|.|- |||
T Consensus 252 GIvFIDEIDKIa~~~~~g~--~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGG--PDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCC--CCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 4999999999987754222 12223356778888887642 34579999876 46888888887 599
Q ss_pred cceeecCCCCHHHHHHHHH
Q 007255 453 DLVLYVPPPDLEARHEILR 471 (611)
Q Consensus 453 ~~~i~~~~p~~~~r~~il~ 471 (611)
...+.+...+.++-..||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999999999986
No 337
>PRK09087 hypothetical protein; Validated
Probab=99.05 E-value=3.9e-09 Score=102.17 Aligned_cols=137 Identities=22% Similarity=0.266 Sum_probs=88.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCC
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD 133 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~ 133 (611)
+.++|+||+|+|||++++++++..+.. +++...+.. ..+.... ..+|+|||++.+...
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~-----------~~~~~~~-------~~~l~iDDi~~~~~~-- 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGS-----------DAANAAA-------EGPVLIEDIDAGGFD-- 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcch-----------HHHHhhh-------cCeEEEECCCCCCCC--
Confidence 569999999999999999999876654 333322211 1111111 237889999876321
Q ss_pred CCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccc---ccHHhhccCCc--ceEEEccCCCHHHHHHHHHHhhc
Q 007255 134 HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA---IDPALRRSGRF--DAEVEVTVPTAEERFEILKLYTK 208 (611)
Q Consensus 134 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~---l~~~l~~~~Rf--~~~i~~~~p~~~~r~~Il~~~~~ 208 (611)
...++.+++...... ..++++++..+.. ..+++++ |+ ...+.+.+|+.+++.+|++..+.
T Consensus 103 ---------~~~lf~l~n~~~~~g----~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 103 ---------ETGLFHLINSVRQAG----TSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred ---------HHHHHHHHHHHHhCC----CeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 123444444322211 2456666655542 3688988 66 36899999999999999999887
Q ss_pred CCCCCC-cccHHHHHHhccC
Q 007255 209 KVPLDA-NVDLEAIATSCNG 227 (611)
Q Consensus 209 ~~~~~~-~~~~~~la~~~~g 227 (611)
...+.- +..++.++....|
T Consensus 168 ~~~~~l~~ev~~~La~~~~r 187 (226)
T PRK09087 168 DRQLYVDPHVVYYLVSRMER 187 (226)
T ss_pred HcCCCCCHHHHHHHHHHhhh
Confidence 765543 3347778877663
No 338
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.04 E-value=1.5e-08 Score=101.59 Aligned_cols=189 Identities=17% Similarity=0.226 Sum_probs=115.3
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCC-cEEe-------ecchhhcc----c----cccch-HHHHHHHH----HHHHhcC
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEA-SFFS-------LSGAELYS----M----YVGES-EALLRNTF----QRARLAA 383 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~-~~~~-------~~~~~~~~----~----~~g~~-~~~~~~~~----~~a~~~~ 383 (611)
..++|+||+|+|||++++.+++.+.. .+.. .+..++.. . ..+.. ......+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999999999998752 2221 11111111 1 11111 11122222 2233456
Q ss_pred CcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-CCCC-eEEEEecCCCc---ccc----hhccCCCCccc
Q 007255 384 PSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-QAKG-ILVLAATNRPH---AID----AALMRPGRFDL 454 (611)
Q Consensus 384 p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~-~~vI~~tn~~~---~ld----~al~r~gRf~~ 454 (611)
+.+++|||+|.+. ......+ ..+-... .... +.|++ +..|+ .+. ..+.+ |+..
T Consensus 124 ~~vliiDe~~~l~--------------~~~~~~l-~~l~~~~~~~~~~~~vvl-~g~~~~~~~l~~~~~~~l~~--r~~~ 185 (269)
T TIGR03015 124 RALLVVDEAQNLT--------------PELLEEL-RMLSNFQTDNAKLLQIFL-VGQPEFRETLQSPQLQQLRQ--RIIA 185 (269)
T ss_pred CeEEEEECcccCC--------------HHHHHHH-HHHhCcccCCCCeEEEEE-cCCHHHHHHHcCchhHHHHh--heee
Confidence 6799999999872 1122222 2222111 1222 33333 33333 221 12444 7778
Q ss_pred eeecCCCCHHHHHHHHHHHhcCCCC-----CCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHH
Q 007255 455 VLYVPPPDLEARHEILRVHTRNMKV-----GDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTV 529 (611)
Q Consensus 455 ~i~~~~p~~~~r~~il~~~~~~~~~-----~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~ 529 (611)
.+.+++.+.++...++...+...+. .++..++.+.+.+.|. ++.|..+|..+...+..+. ...|+.+++..+
T Consensus 186 ~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~--~~~i~~~~v~~~ 262 (269)
T TIGR03015 186 SCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEE--KREIGGEEVREV 262 (269)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcC--CCCCCHHHHHHH
Confidence 8999999999999999877654332 2445688899999996 5669999999998887764 467999999998
Q ss_pred HhhcC
Q 007255 530 KDSLK 534 (611)
Q Consensus 530 l~~~~ 534 (611)
+..++
T Consensus 263 ~~~~~ 267 (269)
T TIGR03015 263 IAEID 267 (269)
T ss_pred HHHhh
Confidence 87654
No 339
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.04 E-value=1.9e-09 Score=112.76 Aligned_cols=151 Identities=21% Similarity=0.246 Sum_probs=90.6
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCC--cEEee-----cchhhccc
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA--SFFSL-----SGAELYSM 363 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~--~~~~~-----~~~~~~~~ 363 (611)
.++|.+++.+.+...+. ...++||+||||||||++|++++..++. +|..+ .++++.+.
T Consensus 21 ~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 36677777776666544 2357999999999999999999998743 23222 23344332
Q ss_pred cccchHHHHHHHHHHHHhc---CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--------CCCCeEE
Q 007255 364 YVGESEALLRNTFQRARLA---APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--------QAKGILV 432 (611)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~---~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~v 432 (611)
....... -..-|...... ...++|+|||..+ +....+.||..|..-. +-+..++
T Consensus 86 l~i~~~~-~~g~f~r~~~G~L~~A~lLfLDEI~ra--------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfi 150 (498)
T PRK13531 86 LSIQALK-DEGRYQRLTSGYLPEAEIVFLDEIWKA--------------GPAILNTLLTAINERRFRNGAHEEKIPMRLL 150 (498)
T ss_pred HHHhhhh-hcCchhhhcCCccccccEEeecccccC--------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEE
Confidence 1000000 00112111111 2349999999754 3678899999884211 1122344
Q ss_pred EEecCCCc---ccchhccCCCCccceeecCCCC-HHHHHHHHHHH
Q 007255 433 LAATNRPH---AIDAALMRPGRFDLVLYVPPPD-LEARHEILRVH 473 (611)
Q Consensus 433 I~~tn~~~---~ld~al~r~gRf~~~i~~~~p~-~~~r~~il~~~ 473 (611)
++|||... ...++++. ||-..+.+|+|+ .++-..|+...
T Consensus 151 v~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 151 VTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred EEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 55666432 23358888 998899999997 46667787653
No 340
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.3e-09 Score=109.46 Aligned_cols=135 Identities=29% Similarity=0.415 Sum_probs=94.2
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc-ccccch-HHHHHHHHHHHH----hcCCcEEEEccccccccc
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MYVGES-EALLRNTFQRAR----LAAPSIIFFDEADVVGAK 398 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~a~----~~~p~il~iDeid~l~~~ 398 (611)
.++||.||+|+|||.||+-+|..++.||...++..+.. .|+|+. |..+.+++..|. ..+..|+||||+|.|..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 57999999999999999999999999999999999875 699985 456677766542 234459999999999855
Q ss_pred CCCCCCCCcchhHHHHHHHHHHhcCC-----------CCCCCeEEEEecC-------CCcccchhccCCCCcc-ceeecC
Q 007255 399 RGGSSSTSITVGERLLSTLLTEMDGL-----------EQAKGILVLAATN-------RPHAIDAALMRPGRFD-LVLYVP 459 (611)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~~tn-------~~~~ld~al~r~gRf~-~~i~~~ 459 (611)
..+-+...+-...-++..||+.++|. .+.+..+.|-||| .-..||.-+-| |.+ ..+-|.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~slGFg 384 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKSLGFG 384 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchhcccC
Confidence 33222222233456889999999873 1122233333333 33456666666 654 566677
Q ss_pred CC
Q 007255 460 PP 461 (611)
Q Consensus 460 ~p 461 (611)
.|
T Consensus 385 ~~ 386 (564)
T KOG0745|consen 385 AP 386 (564)
T ss_pred CC
Confidence 66
No 341
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=7.5e-09 Score=105.50 Aligned_cols=137 Identities=20% Similarity=0.315 Sum_probs=100.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcE-------------------------EEEccccccc--------------
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGAHL-------------------------TVISPHSVHK-------------- 91 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~-------------------------~~v~~~~~~~-------------- 91 (611)
+.+..+||+||+|+||+++|+.+|+.+.+.- ..+.+.....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 5678999999999999999999999885531 1111110000
Q ss_pred --cc-------ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCc
Q 007255 92 --AH-------VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPH 162 (611)
Q Consensus 92 --~~-------~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 162 (611)
.. ..-....++.+.+.....+..+...|++||++|.|.. ...+.|++.+++ ++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~----------~AaNaLLKtLEE------Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV----------AAANALLKTLEE------PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH----------HHHHHHHHHhcC------CCcC
Confidence 00 0112345666665555444445567999999999854 678999999996 4557
Q ss_pred EEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHh
Q 007255 163 VVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLY 206 (611)
Q Consensus 163 v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~ 206 (611)
+++|.+|+.++.+.|.++| |+ ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8899999999999999999 98 48999999999999888764
No 342
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.01 E-value=4.3e-09 Score=115.98 Aligned_cols=234 Identities=19% Similarity=0.203 Sum_probs=137.9
Q ss_pred cccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcE-----Eee
Q 007255 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF-----FSL 355 (611)
Q Consensus 281 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~-----~~~ 355 (611)
.+..|..-+++++|++++++.+...+.. .++++|+||||||||++++++|..++... +..
T Consensus 9 ~~~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 9 EIPVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred ccCcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 3456777899999999999988887763 24799999999999999999999997652 233
Q ss_pred cch----hh-ccccccchHHHHHHHHHHHHhcCCc---------------------------------------------
Q 007255 356 SGA----EL-YSMYVGESEALLRNTFQRARLAAPS--------------------------------------------- 385 (611)
Q Consensus 356 ~~~----~~-~~~~~g~~~~~~~~~~~~a~~~~p~--------------------------------------------- 385 (611)
++. ++ ...+.|..++.++..|..++...|+
T Consensus 74 n~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (608)
T TIGR00764 74 NPEDPNMPRIVEVPAGEGREIVEDYKKKAFKQPSSRNLLLFMIGFIVLSEYFLKNLPPNYLLAAVIAAALILLIFGFFIP 153 (608)
T ss_pred CCCCCchHHHHHHHHhhchHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 331 11 1223344444444444444322221
Q ss_pred --------------------EEEEcccc--cccccCC---------C-CCCC--------------------CcchhHHH
Q 007255 386 --------------------IIFFDEAD--VVGAKRG---------G-SSST--------------------SITVGERL 413 (611)
Q Consensus 386 --------------------il~iDeid--~l~~~~~---------~-~~~~--------------------~~~~~~~~ 413 (611)
+++.+... .|++... . ..+. -.......
T Consensus 154 ~~~~~~~n~lv~~s~~~~~P~v~~~~~~~~~L~G~i~~~~~~g~~g~~~~~~~~i~~G~L~~AngGtL~Ldei~~L~~~~ 233 (608)
T TIGR00764 154 RTSIMVPKLLVDNSGKKKAPFVDATGAHAGALLGDVRHDPFQGSGGLGTPAHERVEAGAIHRAHKGVLYIDEIKTMPLEV 233 (608)
T ss_pred cchhceeeeeecCCCCCCCCEEEeCCCChHHCccceeeccccCccccccCccccCCCCceEECCCCEEEEEChHhCCHHH
Confidence 33322221 2333210 0 0000 00222356
Q ss_pred HHHHHHHhcCCC-------------------CCCCeEEEEecCCC--cccchhccCCCCcc---ceeecCC---CCHHHH
Q 007255 414 LSTLLTEMDGLE-------------------QAKGILVLAATNRP--HAIDAALMRPGRFD---LVLYVPP---PDLEAR 466 (611)
Q Consensus 414 ~~~ll~~l~~~~-------------------~~~~~~vI~~tn~~--~~ld~al~r~gRf~---~~i~~~~---p~~~~r 466 (611)
...|+..|+.-. -+-++.+|+++|.. ..+|++|+. ||+ ..++|+. ++.+.|
T Consensus 234 q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~ 311 (608)
T TIGR00764 234 QQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENR 311 (608)
T ss_pred HHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHH
Confidence 667777664211 12257889888864 478999998 998 6666653 356667
Q ss_pred HHHHHHHh---cCC---CCCCcccHHHHHH----hCC-----CCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHh
Q 007255 467 HEILRVHT---RNM---KVGDDVDLRSIAE----ETE-----LFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKD 531 (611)
Q Consensus 467 ~~il~~~~---~~~---~~~~~~~~~~la~----~~~-----g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~ 531 (611)
.++.+... +.. +..++..+..+.+ .+. -.+.+++.+++++|...|..+ ....|+.+|+..|++
T Consensus 312 ~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~--~~~~I~~ehV~~Ai~ 389 (608)
T TIGR00764 312 DKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSS--GKVYVTAEHVLKAKK 389 (608)
T ss_pred HHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhc--CCceecHHHHHHHHH
Confidence 66665332 222 2122333333332 111 135699999999997766555 356799999999986
Q ss_pred hc
Q 007255 532 SL 533 (611)
Q Consensus 532 ~~ 533 (611)
..
T Consensus 390 ~~ 391 (608)
T TIGR00764 390 LA 391 (608)
T ss_pred HH
Confidence 44
No 343
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.00 E-value=1.4e-09 Score=111.41 Aligned_cols=203 Identities=19% Similarity=0.231 Sum_probs=122.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHH----hCCcEEEEccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRE----CGAHLTVISPHSVHK 91 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~----l~~~~~~v~~~~~~~ 91 (611)
..+.+++|.....+++.+.+.. + .....++|+.|++||||+.+|+.+... .+.+|+.+||..+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-Y----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-h----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 4678899999998888887754 1 123479999999999999999998643 367899999987754
Q ss_pred ccccc------------hHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCC-----
Q 007255 92 AHVGE------------SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK----- 154 (611)
Q Consensus 92 ~~~~~------------~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~----- 154 (611)
..... ....-..+|+.+ .++.||+|||+.|.+ ..+..|+..++...
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A-------~GGtLfLDEI~~LP~----------~~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQA-------NGGTLFLDEIHRLPP----------EGQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheec-------CCCEEehhhhhhCCH----------hHHHHHHHHHHcCceEecC
Confidence 32210 011111223332 367999999999977 66889999998732
Q ss_pred CCCCCCCcEEEEEeecCc--ccccH--HhhccCCcceEEEccCCCHH--HHHHHHHHhh----cCCCCCCcccHHHHHHh
Q 007255 155 PSKTSVPHVVVVASTNRV--DAIDP--ALRRSGRFDAEVEVTVPTAE--ERFEILKLYT----KKVPLDANVDLEAIATS 224 (611)
Q Consensus 155 ~~~~~~~~v~ii~ttn~~--~~l~~--~l~~~~Rf~~~i~~~~p~~~--~r~~Il~~~~----~~~~~~~~~~~~~la~~ 224 (611)
.......+|.+|++|+.. +.+-. .+.+. ++...|.+|+.... ++..++.+++ .+...............
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 222344578899988752 22222 33321 34445555554332 2222333433 33433322222222222
Q ss_pred ccCC----ccccHHHHHHHHHHHHhhh
Q 007255 225 CNGY----VGADLEALCREATMSAVKR 247 (611)
Q Consensus 225 ~~g~----~~~dl~~l~~~a~~~a~~r 247 (611)
...| +-+++++++..++..+...
T Consensus 286 L~~y~~pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 286 LLAYDWPGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHhccc
Confidence 2222 3467889998888776543
No 344
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.00 E-value=6e-09 Score=114.01 Aligned_cols=200 Identities=13% Similarity=0.223 Sum_probs=115.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE-Eccc---cccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV-ISPH---SVHK 91 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~-v~~~---~~~~ 91 (611)
+.+++++|+++.++.|..++.... .+..+...++|+||||||||++++.+|++++..+.. +++. ....
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~ 152 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKN 152 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccc
Confidence 889999999999999998875421 122334569999999999999999999998865433 1111 0000
Q ss_pred c------------cccchHHHHHHHHHHHHhhh------hcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHH-HHhc
Q 007255 92 A------------HVGESEKALREAFSQASSHA------LSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFT-LMDS 152 (611)
Q Consensus 92 ~------------~~~~~~~~l~~~f~~~~~~~------~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~-~l~~ 152 (611)
. ........+..++..+.... ...+..||+|||++.++... ...+..++. ....
T Consensus 153 ~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~-------~~~lq~lLr~~~~e 225 (637)
T TIGR00602 153 DHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD-------TRALHEILRWKYVS 225 (637)
T ss_pred ccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh-------HHHHHHHHHHHhhc
Confidence 0 00122234444444443211 12356799999999876421 123444444 2222
Q ss_pred CCCCCCCCCcEEEEEeecCc------c-------cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCC--C----
Q 007255 153 NKPSKTSVPHVVVVASTNRV------D-------AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPL--D---- 213 (611)
Q Consensus 153 ~~~~~~~~~~v~ii~ttn~~------~-------~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~--~---- 213 (611)
. ....+++|.+-++. + .+.+++++..|. .+|.|++.+.....+.|+..+..... .
T Consensus 226 ---~--~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~ 299 (637)
T TIGR00602 226 ---I--GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIK 299 (637)
T ss_pred ---C--CCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccccc
Confidence 1 11123333332221 1 134788764455 37999999999988888777654211 1
Q ss_pred --CcccHHHHHHhccCCccccHHHHHHHH
Q 007255 214 --ANVDLEAIATSCNGYVGADLEALCREA 240 (611)
Q Consensus 214 --~~~~~~~la~~~~g~~~~dl~~l~~~a 240 (611)
....+..++..+. +|++..+...
T Consensus 300 ~p~~~~l~~I~~~s~----GDiRsAIn~L 324 (637)
T TIGR00602 300 VPKKTSVELLCQGCS----GDIRSAINSL 324 (637)
T ss_pred cCCHHHHHHHHHhCC----ChHHHHHHHH
Confidence 1224566666444 4555554433
No 345
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.00 E-value=9.6e-09 Score=98.12 Aligned_cols=101 Identities=22% Similarity=0.324 Sum_probs=65.9
Q ss_pred CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCC-------------CcccchhccCC
Q 007255 383 APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNR-------------PHAIDAALMRP 449 (611)
Q Consensus 383 ~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~-------------~~~ld~al~r~ 449 (611)
-|.|+||||+|.| .-+.+..|-+.++ ++=.-+||++||+ |+-+++.++.
T Consensus 296 vPGVLFIDEVhML--------------DiEcFTyL~kalE---S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHML--------------DIECFTYLHKALE---SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred cCcceEeeehhhh--------------hhHHHHHHHHHhc---CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 3778889999877 2356666666665 3333467777774 5567788887
Q ss_pred CCccceeecCCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHHhCCCCCHHHHHHH
Q 007255 450 GRFDLVLYVPPPDLEARHEILRVHTRNMKVGD-DVDLRSIAEETELFTGAELEGL 503 (611)
Q Consensus 450 gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~s~~~i~~~ 503 (611)
|+- +|..-+++.++..+|++...+-..+.- +..+..|+.....-|-+...++
T Consensus 358 -Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqL 410 (456)
T KOG1942|consen 358 -RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQL 410 (456)
T ss_pred -hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHh
Confidence 775 677778888999999997776555543 3446667766443333333333
No 346
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.00 E-value=6.9e-09 Score=105.27 Aligned_cols=168 Identities=23% Similarity=0.298 Sum_probs=112.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccc--------
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH-------- 87 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~-------- 87 (611)
-.|..++|++..+..|--.-..| .-.++|+-|+.||||||++|+++.-|...-+...|.
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 46789999999998875432221 226899999999999999999999885432222220
Q ss_pred ------------------------ccccccccchHHHH------HHHHHHHH-----hhhhcCCCeEEEEccccccCCCC
Q 007255 88 ------------------------SVHKAHVGESEKAL------REAFSQAS-----SHALSGKPSVVFIDEIDALCPRR 132 (611)
Q Consensus 88 ------------------------~~~~~~~~~~~~~l------~~~f~~~~-----~~~~~~~~~il~IDeid~l~~~~ 132 (611)
.+.....+.++..+ .++.+.-. ......+.+||+|||++.|..
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d-- 158 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD-- 158 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH--
Confidence 01111223333311 11111100 001123457999999988854
Q ss_pred CCCchhhHHHHHHHHHHHhcCC-------CCCCCCCcEEEEEeecCcc-cccHHhhccCCcceEEEccCC-CHHHHHHHH
Q 007255 133 DHRREQDVRIASQLFTLMDSNK-------PSKTSVPHVVVVASTNRVD-AIDPALRRSGRFDAEVEVTVP-TAEERFEIL 203 (611)
Q Consensus 133 ~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~~~v~ii~ttn~~~-~l~~~l~~~~Rf~~~i~~~~p-~~~~r~~Il 203 (611)
.++..|++.+.... .....+.++++|+|+|+.+ .|-|.|+. ||...+.+..| +.++|.+|+
T Consensus 159 --------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii 228 (423)
T COG1239 159 --------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEII 228 (423)
T ss_pred --------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHH
Confidence 78899999887631 1223467899999999965 89999998 99999988776 788999998
Q ss_pred HHhhc
Q 007255 204 KLYTK 208 (611)
Q Consensus 204 ~~~~~ 208 (611)
.....
T Consensus 229 ~r~~~ 233 (423)
T COG1239 229 RRRLA 233 (423)
T ss_pred HHHHH
Confidence 87654
No 347
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.8e-10 Score=115.06 Aligned_cols=48 Identities=31% Similarity=0.413 Sum_probs=41.5
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~ 348 (611)
...|.||.|++..|+.+...... .+++|++||||||||++|+-+...+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccC
Confidence 34789999999999999988763 4789999999999999999987654
No 348
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=9.6e-09 Score=105.06 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=111.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEcccccccccccchHHHHHHHHH
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGAH------------------------LTVISPHSVHKAHVGESEKALREAFS 106 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~f~ 106 (611)
+.+..+||+||+|+||+++|.++|+.+.+. +..+.+.. ....-....++.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~~~~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK---GKSSLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc---ccccCCHHHHHHHHH
Confidence 456789999999999999999999988431 11111110 001123456666666
Q ss_pred HHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcc
Q 007255 107 QASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFD 186 (611)
Q Consensus 107 ~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~ 186 (611)
.....+..+...|++||++|.|.. ...+.|++.+++ +++++++|..|+.++.+.|.++| |+.
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~~----------~AaNaLLKtLEE------Pp~~t~fiL~t~~~~~lLpTIrS--RCq 160 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTD----------AAANALLKTLEE------PPENTWFFLACREPARLLATLRS--RCR 160 (334)
T ss_pred HHhhccccCCceEEEEcchHhhCH----------HHHHHHHHHhcC------CCCCeEEEEEECChhhChHHHHh--ccc
Confidence 666555556677999999999854 678999999997 55578999999999999999999 886
Q ss_pred eEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccH
Q 007255 187 AEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADL 233 (611)
Q Consensus 187 ~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl 233 (611)
.+.|++|+.++..+.+.... +.+. .....++..++|-.+..+
T Consensus 161 -~~~~~~~~~~~~~~~L~~~~---~~~~-~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 161 -LHYLAPPPEQYALTWLSREV---TMSQ-DALLAALRLSAGAPGAAL 202 (334)
T ss_pred -cccCCCCCHHHHHHHHHHcc---CCCH-HHHHHHHHHcCCCHHHHH
Confidence 78999999999888776431 2222 224455666666555433
No 349
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=1.8e-08 Score=101.65 Aligned_cols=149 Identities=19% Similarity=0.229 Sum_probs=107.2
Q ss_pred CcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------------
Q 007255 23 GNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH---------------------- 80 (611)
Q Consensus 23 G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~---------------------- 80 (611)
.+....+.|...+.. -+.+..+||+||.|+||+++|+.+|+.+.+.
T Consensus 7 Wl~~~~~~l~~~~~~------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 7 WLVPVWQNWKAGLDA------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred cHHHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 356667777666533 2456789999999999999999999987432
Q ss_pred -EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCC
Q 007255 81 -LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTS 159 (611)
Q Consensus 81 -~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 159 (611)
+..+.+..- ...-....++.+-+.....+..+...|++||++|.|.. ...+.|++.+++ +
T Consensus 75 D~~~i~p~~~---~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~----------~AaNaLLKtLEE------P 135 (319)
T PRK06090 75 DLHVIKPEKE---GKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE----------SASNALLKTLEE------P 135 (319)
T ss_pred CEEEEecCcC---CCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCH----------HHHHHHHHHhcC------C
Confidence 122211100 00112345555555544444444567999999999854 668999999997 4
Q ss_pred CCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHH
Q 007255 160 VPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKL 205 (611)
Q Consensus 160 ~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~ 205 (611)
+.++++|..|+.++.+-|.++| |+. .+.|++|+.++..+.+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCeEEEEEECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 5578899999999999999999 985 899999999998888765
No 350
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.97 E-value=1.8e-09 Score=99.33 Aligned_cols=134 Identities=25% Similarity=0.404 Sum_probs=83.9
Q ss_pred cCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccc---
Q 007255 21 IGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHV--- 94 (611)
Q Consensus 21 i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~--- 94 (611)
|+|.....+.+.+.+... ...+.+|||+|++||||+.+|+++.+.. +.+|+.++|+.+.....
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 567777878777766542 1345899999999999999999998865 46899999987643211
Q ss_pred --cch-------HHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCC
Q 007255 95 --GES-------EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSV 160 (611)
Q Consensus 95 --~~~-------~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~ 160 (611)
|.. ...-...++.+ ..+.||||||+.|.+ .++..|++.++..... ....
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A-------~~GtL~Ld~I~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~ 132 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQA-------NGGTLFLDEIEDLPP----------ELQAKLLRVLEEGKFTRLGSDKPVP 132 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHT-------TTSEEEEETGGGS-H----------HHHHHHHHHHHHSEEECCTSSSEEE
T ss_pred hhccccccccccccccCCceeec-------cceEEeecchhhhHH----------HHHHHHHHHHhhchhcccccccccc
Confidence 100 00011333333 367999999999865 7889999999864321 1123
Q ss_pred CcEEEEEeecCcccccHHhhccCCc
Q 007255 161 PHVVVVASTNRVDAIDPALRRSGRF 185 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~~~l~~~~Rf 185 (611)
.++.+|++|+.. +...+. .|+|
T Consensus 133 ~~~RiI~st~~~--l~~~v~-~g~f 154 (168)
T PF00158_consen 133 VDVRIIASTSKD--LEELVE-QGRF 154 (168)
T ss_dssp --EEEEEEESS---HHHHHH-TTSS
T ss_pred ccceEEeecCcC--HHHHHH-cCCC
Confidence 478999999863 334333 3455
No 351
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.97 E-value=2.6e-08 Score=97.96 Aligned_cols=188 Identities=18% Similarity=0.197 Sum_probs=113.6
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh---------CCcEEeecchhhcc--------------cc--ccchHHHHHHHHHH
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA---------EASFFSLSGAELYS--------------MY--VGESEALLRNTFQR 378 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~---------~~~~~~~~~~~~~~--------------~~--~g~~~~~~~~~~~~ 378 (611)
..++||+|++|.|||++++.++..- .++++.+.+..--+ .+ .......-.++...
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998654 24566555422111 11 11123334455566
Q ss_pred HHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecC--CCc--ccchhccCCCCccc
Q 007255 379 ARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATN--RPH--AIDAALMRPGRFDL 454 (611)
Q Consensus 379 a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn--~~~--~ld~al~r~gRf~~ 454 (611)
.+..++.+|+|||+|.+.... .+-..++++.++.+...-++-+|+..+ -.. .-|+.+.+ ||+
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs-----------~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~- 206 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGS-----------YRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE- 206 (302)
T ss_pred HHHcCCcEEEeechHHHhccc-----------HHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC-
Confidence 677888899999999875221 111233333333333333444444332 222 34778887 998
Q ss_pred eeecCCCCH-HHHHHHHHHHhcCCCCCCc-----cc-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHH
Q 007255 455 VLYVPPPDL-EARHEILRVHTRNMKVGDD-----VD-LRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQ 527 (611)
Q Consensus 455 ~i~~~~p~~-~~r~~il~~~~~~~~~~~~-----~~-~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~ 527 (611)
.+.+|.-.. ++-..++..+.+..++... .+ ...+-..++|. -+++..++..|+..|++.. ...|+.+.+.
T Consensus 207 ~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~-iG~l~~ll~~aA~~AI~sG--~E~It~~~l~ 283 (302)
T PF05621_consen 207 PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL-IGELSRLLNAAAIAAIRSG--EERITREILD 283 (302)
T ss_pred CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHhcC--CceecHHHHh
Confidence 555554333 3455667766655555422 22 25666788885 4679999999999999875 4556665554
Q ss_pred H
Q 007255 528 T 528 (611)
Q Consensus 528 ~ 528 (611)
.
T Consensus 284 ~ 284 (302)
T PF05621_consen 284 K 284 (302)
T ss_pred h
Confidence 3
No 352
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.97 E-value=4.3e-09 Score=107.79 Aligned_cols=195 Identities=14% Similarity=0.175 Sum_probs=111.4
Q ss_pred cCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccch
Q 007255 21 IGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGES 97 (611)
Q Consensus 21 i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~ 97 (611)
++|.....+.+.+.+... .....+|||+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l--- 66 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLL--- 66 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHH---
Confidence 456666667666665432 1245799999999999999999997755 46899999987642211
Q ss_pred HHHHHHHHHHH-------H----hhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCCC
Q 007255 98 EKALREAFSQA-------S----SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSVP 161 (611)
Q Consensus 98 ~~~l~~~f~~~-------~----~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~~ 161 (611)
+ ..+|... . .......++.|||||++.|.. ..+..|+..++..... .....
T Consensus 67 ~---~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (329)
T TIGR02974 67 D---SELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL----------LVQEKLLRVIEYGEFERVGGSQTLQV 133 (329)
T ss_pred H---HHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCH----------HHHHHHHHHHHcCcEEecCCCceecc
Confidence 0 1112110 0 001122467999999998855 6788888888764311 11234
Q ss_pred cEEEEEeecCc-------ccccHHhhccCCcc-eEEEccCCC--HHHHHHHHHHhhcCC----CCC--Cccc---HHHHH
Q 007255 162 HVVVVASTNRV-------DAIDPALRRSGRFD-AEVEVTVPT--AEERFEILKLYTKKV----PLD--ANVD---LEAIA 222 (611)
Q Consensus 162 ~v~ii~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~--~~~r~~Il~~~~~~~----~~~--~~~~---~~~la 222 (611)
++.+|++|+.. ..+.+.|.. |+. ..|.+|+.. .++...++++++... ... .... +..+.
T Consensus 134 ~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~ 211 (329)
T TIGR02974 134 DVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLL 211 (329)
T ss_pred ceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 57889988763 244566665 664 234444443 234444555544321 111 1112 22222
Q ss_pred HhccCCccccHHHHHHHHHHHH
Q 007255 223 TSCNGYVGADLEALCREATMSA 244 (611)
Q Consensus 223 ~~~~g~~~~dl~~l~~~a~~~a 244 (611)
...=-.+-++|++++..++..+
T Consensus 212 ~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 212 EYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hCCCCchHHHHHHHHHHHHHhC
Confidence 2111123467777777766543
No 353
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.97 E-value=2.8e-09 Score=114.32 Aligned_cols=172 Identities=23% Similarity=0.258 Sum_probs=105.6
Q ss_pred cccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhC-----------------
Q 007255 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE----------------- 349 (611)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~----------------- 349 (611)
..|+++.|++.+++.+...+. ..++++|+||||||||+++++++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~---------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA---------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc---------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 378999999998777665443 236799999999999999999997541
Q ss_pred -----------CcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHH
Q 007255 350 -----------ASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (611)
Q Consensus 350 -----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll 418 (611)
.+|...+.+.......|.....-...+. ..+..+|||||++.+ ...++..|+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~---lA~~GvLfLDEi~e~--------------~~~~~~~L~ 316 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEIS---LAHNGVLFLDELPEF--------------KRSVLDALR 316 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhh---ccCCCeEecCChhhC--------------CHHHHHHHH
Confidence 1111111111100011111000011122 234459999999876 246677777
Q ss_pred HHhcCCC-----------CCCCeEEEEecCCC------c-----------------ccchhccCCCCccceeecCCCCHH
Q 007255 419 TEMDGLE-----------QAKGILVLAATNRP------H-----------------AIDAALMRPGRFDLVLYVPPPDLE 464 (611)
Q Consensus 419 ~~l~~~~-----------~~~~~~vI~~tn~~------~-----------------~ld~al~r~gRf~~~i~~~~p~~~ 464 (611)
..|+.-. ...++.+|+++|.- + .+..+++. |||.++.++.++.+
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 7775321 12468899999852 1 47778888 99999999887765
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007255 465 ARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALRE 514 (611)
Q Consensus 465 ~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~ 514 (611)
+ +.....+-+.++++.-+.+|......|
T Consensus 395 ~----------------------l~~~~~~e~s~~ir~rV~~Ar~~q~~R 422 (499)
T TIGR00368 395 K----------------------LLSTGSGESSAEVKQRVIKAREIQNIR 422 (499)
T ss_pred H----------------------HhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2 111122356777877777776655555
No 354
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.96 E-value=2.2e-08 Score=101.47 Aligned_cols=176 Identities=19% Similarity=0.217 Sum_probs=111.6
Q ss_pred ccccccc-ccCCcHHHHHHHHHHHHhhhhCchHHHhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHhCC-------cEEE
Q 007255 13 EKWKAEE-AIGGNRAAVEALRELITFPLLYSSQAQKLGL-KWPRGLLLYGPPGTGKTSLVRAVVRECGA-------HLTV 83 (611)
Q Consensus 13 ~~~~~~~-~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~-~~~~~iLl~Gp~GtGKT~la~~la~~l~~-------~~~~ 83 (611)
..++-|+ ++.|++++++++.+.+.... .|. .....++|+||||||||++++++++.++. +++.
T Consensus 44 ~~y~~F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~ 115 (361)
T smart00763 44 KRYRFFDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYT 115 (361)
T ss_pred eeccccchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEE
Confidence 3456677 99999999999998876532 122 23478899999999999999999999976 7777
Q ss_pred Ecc----cccccccccchHHHHHHHHHHHHhh-----------------------h------------------------
Q 007255 84 ISP----HSVHKAHVGESEKALREAFSQASSH-----------------------A------------------------ 112 (611)
Q Consensus 84 v~~----~~~~~~~~~~~~~~l~~~f~~~~~~-----------------------~------------------------ 112 (611)
+.. +.+.....+......+..|.+.... .
T Consensus 116 ~~~~~~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P 195 (361)
T smart00763 116 FKWNGEESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEP 195 (361)
T ss_pred EEecCCCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECC
Confidence 765 3333222222222222222111100 0
Q ss_pred -------------------------------------hcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCC
Q 007255 113 -------------------------------------LSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP 155 (611)
Q Consensus 113 -------------------------------------~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~ 155 (611)
.....+|+-|+|+.+. +.+++..|++.+++..-
T Consensus 196 ~D~~~qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~----------~~~~l~~LL~~~qE~~v 265 (361)
T smart00763 196 KDENNQDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKA----------DIKFLHPLLTATQEGNI 265 (361)
T ss_pred CCCCcccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcC----------CHHHHHHHhhhhhcceE
Confidence 0011234444444433 34788889999886432
Q ss_pred CC-----CCCCcEEEEEeecCcc-------cccHHhhccCCcceEEEccCC-CHHHHHHHHHHhhcC
Q 007255 156 SK-----TSVPHVVVVASTNRVD-------AIDPALRRSGRFDAEVEVTVP-TAEERFEILKLYTKK 209 (611)
Q Consensus 156 ~~-----~~~~~v~ii~ttn~~~-------~l~~~l~~~~Rf~~~i~~~~p-~~~~r~~Il~~~~~~ 209 (611)
.. .-+-..+||+++|+.+ ...++|++ ||. .+.+|.| +..+-.+|.+..+..
T Consensus 266 ~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 266 KGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred ecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 21 1223468899999973 56799998 986 7888887 666777788877654
No 355
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.5e-09 Score=106.38 Aligned_cols=99 Identities=22% Similarity=0.443 Sum_probs=79.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccc-cccccch-HHHHHHHHHHHHhhhhcCCCeEEEEccccccCCC
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH-KAHVGES-EKALREAFSQASSHALSGKPSVVFIDEIDALCPR 131 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~-~~~~~~~-~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~ 131 (611)
.|+||.||+|+|||.+++.+|+.++.+|...+|.++. ..|.|+- +..+.+++..+.-.....+.+|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 5899999999999999999999999999999999876 3466654 4456777777766666677889999999999854
Q ss_pred CCCC----chhhHHHHHHHHHHHhc
Q 007255 132 RDHR----REQDVRIASQLFTLMDS 152 (611)
Q Consensus 132 ~~~~----~~~~~~~~~~ll~~l~~ 152 (611)
..+. .-....+++.|+.+++.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 3321 22345789999999986
No 356
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.95 E-value=3.4e-08 Score=93.92 Aligned_cols=179 Identities=15% Similarity=0.193 Sum_probs=126.3
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-C--Cc-----------
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-E--AS----------- 351 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-~--~~----------- 351 (611)
+-+++.+.+.++....+...... ..-.++++|||+|+||.+.+-++-+++ | .+
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred cchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 34566677777777776665431 111369999999999999999998887 2 11
Q ss_pred ---------------EEeecchhhccccccc-hHHHHHHHHHHHHhcCC---------cEEEEcccccccccCCCCCCCC
Q 007255 352 ---------------FFSLSGAELYSMYVGE-SEALLRNTFQRARLAAP---------SIIFFDEADVVGAKRGGSSSTS 406 (611)
Q Consensus 352 ---------------~~~~~~~~~~~~~~g~-~~~~~~~~~~~a~~~~p---------~il~iDeid~l~~~~~~~~~~~ 406 (611)
.+++++++ .|. ..-.++.+.+...+.+| .+++|.|+|.+
T Consensus 76 pS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L----------- 139 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL----------- 139 (351)
T ss_pred CCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----------
Confidence 12222222 222 23456777777665544 39999999988
Q ss_pred cchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcc-cH
Q 007255 407 ITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDV-DL 485 (611)
Q Consensus 407 ~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~ 485 (611)
.++.+.+|-..|+. ..+.+.+|.++|..+.+-+++.+ |+- .|.+|.|+.++...++...+.+..+.-.. -+
T Consensus 140 ---T~dAQ~aLRRTMEk--Ys~~~RlIl~cns~SriIepIrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l 211 (351)
T KOG2035|consen 140 ---TRDAQHALRRTMEK--YSSNCRLILVCNSTSRIIEPIRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELL 211 (351)
T ss_pred ---hHHHHHHHHHHHHH--HhcCceEEEEecCcccchhHHhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHH
Confidence 35677888888884 45667888899999999999988 775 89999999999999999888776665443 35
Q ss_pred HHHHHhCCCCCHHHHHHHHH
Q 007255 486 RSIAEETELFTGAELEGLCR 505 (611)
Q Consensus 486 ~~la~~~~g~s~~~i~~~~~ 505 (611)
..+|+.++| +++.++.
T Consensus 212 ~rIa~kS~~----nLRrAll 227 (351)
T KOG2035|consen 212 KRIAEKSNR----NLRRALL 227 (351)
T ss_pred HHHHHHhcc----cHHHHHH
Confidence 677887665 5554433
No 357
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.95 E-value=7.1e-09 Score=106.33 Aligned_cols=198 Identities=13% Similarity=0.173 Sum_probs=116.9
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccccccccc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAH 93 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~ 93 (611)
.+++++|.....+.+.+.+.... ..+.+|||+|++||||+++|+++.... +.+|+.++|..+....
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 45789999999888888775421 245799999999999999999998665 4689999998763211
Q ss_pred ccchHHHHHHHHHHH-----------HhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC-----
Q 007255 94 VGESEKALREAFSQA-----------SSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK----- 157 (611)
Q Consensus 94 ~~~~~~~l~~~f~~~-----------~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~----- 157 (611)
. . ..+|... ........++.|||||+|.|.. ..+..|+..++......
T Consensus 73 ~---~---~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~----------~~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 73 L---D---SELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM----------LVQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred H---H---HHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH----------HHHHHHHHHHhcCcEEeCCCCc
Confidence 0 0 1111110 0001123467999999999865 67888888887643111
Q ss_pred CCCCcEEEEEeecCc-------ccccHHhhccCCcc-eEEEccCCCH--HHHHHHHHHhhcCC----CCC--CcccHHHH
Q 007255 158 TSVPHVVVVASTNRV-------DAIDPALRRSGRFD-AEVEVTVPTA--EERFEILKLYTKKV----PLD--ANVDLEAI 221 (611)
Q Consensus 158 ~~~~~v~ii~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~~--~~r~~Il~~~~~~~----~~~--~~~~~~~l 221 (611)
....++.+|++|+.. ..+.+.+.. ||. ..|.+|+... ++...++++++... ... ....-+.+
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 112357888887763 245566765 663 3455555422 23444555554321 111 11121221
Q ss_pred HHh-ccCC--ccccHHHHHHHHHHH
Q 007255 222 ATS-CNGY--VGADLEALCREATMS 243 (611)
Q Consensus 222 a~~-~~g~--~~~dl~~l~~~a~~~ 243 (611)
... ...| +-++|++++..++..
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 111 1223 346777887777654
No 358
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.95 E-value=1.2e-08 Score=112.24 Aligned_cols=140 Identities=17% Similarity=0.265 Sum_probs=95.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEcccccccccccchHHHHHHHHHHH----Hh-hhhcCCCeEEEEcccc
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGA--HLTVISPHSVHKAHVGESEKALREAFSQA----SS-HALSGKPSVVFIDEID 126 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~~~~~~~~~~~~~~~~l~~~f~~~----~~-~~~~~~~~il~IDeid 126 (611)
.+|||.|+||||||++++++++.+.. +|+.+..+......+|... +...+... .. .....+.++|||||++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~id--l~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGID--VEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchh--hhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 59999999999999999999998764 5887775433333333321 11101100 00 0112345799999999
Q ss_pred ccCCCCCCCchhhHHHHHHHHHHHhcCC-------CCCCCCCcEEEEEeecCcc---cccHHhhccCCcceEEEccC-CC
Q 007255 127 ALCPRRDHRREQDVRIASQLFTLMDSNK-------PSKTSVPHVVVVASTNRVD---AIDPALRRSGRFDAEVEVTV-PT 195 (611)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~~~v~ii~ttn~~~---~l~~~l~~~~Rf~~~i~~~~-p~ 195 (611)
.+.+ ..+..|+..|+... .....+..+.+|+|+|+.+ .+.+++.. ||..++.+.. |+
T Consensus 95 rl~~----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~ 162 (589)
T TIGR02031 95 LLDD----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVAS 162 (589)
T ss_pred hCCH----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCC
Confidence 8865 67889999998643 1112234689999999865 78999998 9987776654 57
Q ss_pred HHHHHHHHHHhh
Q 007255 196 AEERFEILKLYT 207 (611)
Q Consensus 196 ~~~r~~Il~~~~ 207 (611)
.++|.+|++...
T Consensus 163 ~~er~eil~~~~ 174 (589)
T TIGR02031 163 QDLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHHH
Confidence 778889888765
No 359
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.94 E-value=7.8e-09 Score=110.91 Aligned_cols=153 Identities=22% Similarity=0.254 Sum_probs=94.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEccc-ccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA----HLTVISPH-SVH 90 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~----~~~~v~~~-~~~ 90 (611)
.+|+++.|++.+++.+.-.+ ....+++|.||||||||++++.++..+.. ..+.+..- ++.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 47899999999987765543 23479999999999999999999875521 11111110 000
Q ss_pred cc---------------cccchHHHHHHHHHHH----HhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHh
Q 007255 91 KA---------------HVGESEKALREAFSQA----SSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (611)
Q Consensus 91 ~~---------------~~~~~~~~l~~~f~~~----~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 151 (611)
.. +...+... ++... .......+.++|||||++.+.+ ..+..|+..|+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~---~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~----------~~~~~L~~~LE 320 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPA---LVGGGPIPLPGEISLAHNGVLFLDELPEFKR----------SVLDALREPIE 320 (499)
T ss_pred hhhccccccccCCccccccccchhh---hhCCccccchhhhhccCCCeEecCChhhCCH----------HHHHHHHHHHH
Confidence 00 00000000 00000 0000123467999999987643 67788888887
Q ss_pred cCCC-------CCCCCCcEEEEEeecCc-----c------------------cccHHhhccCCcceEEEccCCCHHH
Q 007255 152 SNKP-------SKTSVPHVVVVASTNRV-----D------------------AIDPALRRSGRFDAEVEVTVPTAEE 198 (611)
Q Consensus 152 ~~~~-------~~~~~~~v~ii~ttn~~-----~------------------~l~~~l~~~~Rf~~~i~~~~p~~~~ 198 (611)
...- ....+.++.+|+++|+- . .++..++. ||+..+.++.++.++
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEK 395 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHH
Confidence 6431 12234578999999972 1 47788888 999888998887653
No 360
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.92 E-value=1.1e-09 Score=108.91 Aligned_cols=148 Identities=24% Similarity=0.357 Sum_probs=83.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcE---EEEcccccccccccchHHHHHHHHHHHH-------hhhhcCCCeEEE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHL---TVISPHSVHKAHVGESEKALREAFSQAS-------SHALSGKPSVVF 121 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~---~~v~~~~~~~~~~~~~~~~l~~~f~~~~-------~~~~~~~~~il~ 121 (611)
...++||+||+|||||++++.+.+.+...- ..++.+.. .+...++.+.+... -++..++.+|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 457999999999999999999888765432 22332211 11122222221111 012234567999
Q ss_pred EccccccCCCCCCCchhhHHHHHHHHHHH---hcCCCCCCCCCcEEEEEeecCcc---cccHHhhccCCcceEEEccCCC
Q 007255 122 IDEIDALCPRRDHRREQDVRIASQLFTLM---DSNKPSKTSVPHVVVVASTNRVD---AIDPALRRSGRFDAEVEVTVPT 195 (611)
Q Consensus 122 IDeid~l~~~~~~~~~~~~~~~~~ll~~l---~~~~~~~~~~~~v~ii~ttn~~~---~l~~~l~~~~Rf~~~i~~~~p~ 195 (611)
|||++.-.++ ..+.....++++++++.- |..........++.+++++++.. .+++++.| +|. .+.++.|+
T Consensus 106 iDDlN~p~~d-~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~~~p~ 181 (272)
T PF12775_consen 106 IDDLNMPQPD-KYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNIPYPS 181 (272)
T ss_dssp EETTT-S----TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE----T
T ss_pred ecccCCCCCC-CCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEEecCCC
Confidence 9999754433 233333334444443221 11111222345688999998743 68999998 774 89999999
Q ss_pred HHHHHHHHHHhhcC
Q 007255 196 AEERFEILKLYTKK 209 (611)
Q Consensus 196 ~~~r~~Il~~~~~~ 209 (611)
.+....|+..++..
T Consensus 182 ~~sl~~If~~il~~ 195 (272)
T PF12775_consen 182 DESLNTIFSSILQS 195 (272)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 99999999887754
No 361
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.90 E-value=2e-08 Score=97.66 Aligned_cols=190 Identities=13% Similarity=0.106 Sum_probs=121.5
Q ss_pred cccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc------E
Q 007255 279 GVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS------F 352 (611)
Q Consensus 279 ~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~------~ 352 (611)
.+....++..+.++++++++...+.++... ....++|+|||||||||+...+.|..+-++ +
T Consensus 30 pwvekyrP~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~ 96 (360)
T KOG0990|consen 30 PWVEKYRPPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSML 96 (360)
T ss_pred CCccCCCCchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHH
Confidence 344555667789999999999999888543 222289999999999999999999988553 2
Q ss_pred EeecchhhccccccchHHHHHHHHHHHHh-------cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC
Q 007255 353 FSLSGAELYSMYVGESEALLRNTFQRARL-------AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE 425 (611)
Q Consensus 353 ~~~~~~~~~~~~~g~~~~~~~~~~~~a~~-------~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 425 (611)
..+++++-.+ .+-.... -..|..++. ..+..+++||+|.+ .....++|-+.++.
T Consensus 97 lelnaSd~rg--id~vr~q-i~~fast~~~~~fst~~~fKlvILDEADaM--------------T~~AQnALRRviek-- 157 (360)
T KOG0990|consen 97 LELNASDDRG--IDPVRQQ-IHLFASTQQPTTYSTHAAFKLVILDEADAM--------------TRDAQNALRRVIEK-- 157 (360)
T ss_pred HHhhccCccC--CcchHHH-HHHHHhhccceeccccCceeEEEecchhHh--------------hHHHHHHHHHHHHH--
Confidence 2233333222 1211222 233444442 25669999999976 35667777776664
Q ss_pred CCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHHhCCCCCHHHHHHHH
Q 007255 426 QAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGD-DVDLRSIAEETELFTGAELEGLC 504 (611)
Q Consensus 426 ~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~s~~~i~~~~ 504 (611)
...++.|+..+|.|..+.|++.. ||. .+.|.+.+......++..+...-+... .+....++..+ -+|++.++
T Consensus 158 ~t~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s----~gDmr~a~ 230 (360)
T KOG0990|consen 158 YTANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLS----VGDMRVAL 230 (360)
T ss_pred hccceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHh----HHHHHHHH
Confidence 34455566789999999999987 777 566666676666666665554443332 22334445443 33555555
Q ss_pred HHH
Q 007255 505 REA 507 (611)
Q Consensus 505 ~~a 507 (611)
+-.
T Consensus 231 n~L 233 (360)
T KOG0990|consen 231 NYL 233 (360)
T ss_pred HHH
Confidence 433
No 362
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.90 E-value=1.1e-08 Score=91.13 Aligned_cols=125 Identities=33% Similarity=0.459 Sum_probs=74.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEccccccccc--------------ccchHHHHHHHHHHHHhhhhcC
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAH---LTVISPHSVHKAH--------------VGESEKALREAFSQASSHALSG 115 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~---~~~v~~~~~~~~~--------------~~~~~~~l~~~f~~~~~~~~~~ 115 (611)
+.+++|+||||||||++++.+|..+... ++.++++...... ...........+..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL---- 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc----
Confidence 4689999999999999999999999775 7888776543221 122233444555555433
Q ss_pred CCeEEEEccccccCCCCCCCchhhHHHHHHH---HHHHhcCCCCCCCCCcEEEEEeecC-cccccHHhhccCCcceEEEc
Q 007255 116 KPSVVFIDEIDALCPRRDHRREQDVRIASQL---FTLMDSNKPSKTSVPHVVVVASTNR-VDAIDPALRRSGRFDAEVEV 191 (611)
Q Consensus 116 ~~~il~IDeid~l~~~~~~~~~~~~~~~~~l---l~~l~~~~~~~~~~~~v~ii~ttn~-~~~l~~~l~~~~Rf~~~i~~ 191 (611)
.+.+++|||++.+...... ...... ....... ......+|+++|. ....+..+.. |++..+.+
T Consensus 78 ~~~viiiDei~~~~~~~~~------~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~ 144 (148)
T smart00382 78 KPDVLILDEITSLLDAEQE------ALLLLLEELRLLLLLK-----SEKNLTVILTTNDEKDLGPALLRR--RFDRRIVL 144 (148)
T ss_pred CCCEEEEECCcccCCHHHH------HHHHhhhhhHHHHHHH-----hcCCCEEEEEeCCCccCchhhhhh--ccceEEEe
Confidence 3689999999988663210 000000 0001100 1124678888886 3344555554 77767766
Q ss_pred cCC
Q 007255 192 TVP 194 (611)
Q Consensus 192 ~~p 194 (611)
..+
T Consensus 145 ~~~ 147 (148)
T smart00382 145 LLI 147 (148)
T ss_pred cCC
Confidence 544
No 363
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=6.5e-09 Score=105.89 Aligned_cols=131 Identities=18% Similarity=0.254 Sum_probs=94.2
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHhCCc-------------------------EEeecchhhcccccc-----chHHH
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEAS-------------------------FFSLSGAELYSMYVG-----ESEAL 371 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~-------------------------~~~~~~~~~~~~~~g-----~~~~~ 371 (611)
+.++++||+||+|+|||++|+.+|..+.|. ++.+++..-. ...| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 567899999999999999999999988542 2333321100 0001 12445
Q ss_pred HHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhcc
Q 007255 372 LRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALM 447 (611)
Q Consensus 372 ~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~ 447 (611)
++.+.+.+.. ....|++||+++.+ +....+.|++.|+. +..++.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L--------------d~~a~naLLk~LEe--p~~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM--------------NLQAANSLLKVLEE--PPPQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC--------------CHHHHHHHHHHHHh--CcCCCEEEEEeCChHhChHHHH
Confidence 6666666643 22349999999877 35677899999984 3455778889999999999988
Q ss_pred CCCCccceeecCCCCHHHHHHHHHH
Q 007255 448 RPGRFDLVLYVPPPDLEARHEILRV 472 (611)
Q Consensus 448 r~gRf~~~i~~~~p~~~~r~~il~~ 472 (611)
+ |+. .+.|++|+.++..+.+..
T Consensus 162 S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 8 887 888999999988877753
No 364
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.87 E-value=8.1e-09 Score=112.28 Aligned_cols=141 Identities=21% Similarity=0.262 Sum_probs=89.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE----cccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEcccccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI----SPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDAL 128 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v----~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l 128 (611)
..|+||+|+||||||++++++++......+.. ++..+........ ...-|..-.........++++|||+|.+
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~---~~g~~~~~~G~l~~A~~Gil~iDEi~~l 312 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDP---ETREFTLEGGALVLADNGVCCIDEFDKM 312 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEcc---CcceEEecCccEEecCCCEEEEechhhC
Confidence 45999999999999999999999875433221 1111111000000 0000000000011234679999999988
Q ss_pred CCCCCCCchhhHHHHHHHHHHHhcCCC-------CCCCCCcEEEEEeecCcc-------------cccHHhhccCCcceE
Q 007255 129 CPRRDHRREQDVRIASQLFTLMDSNKP-------SKTSVPHVVVVASTNRVD-------------AIDPALRRSGRFDAE 188 (611)
Q Consensus 129 ~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~~~v~ii~ttn~~~-------------~l~~~l~~~~Rf~~~ 188 (611)
.+ ..+..|+..|+...- ....+.++.+|+++|+.+ .+++++.+ ||+..
T Consensus 313 ~~----------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi 380 (509)
T smart00350 313 DD----------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLL 380 (509)
T ss_pred CH----------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeE
Confidence 55 567788888876321 111234689999999853 58999999 99754
Q ss_pred -EEccCCCHHHHHHHHHHhhc
Q 007255 189 -VEVTVPTAEERFEILKLYTK 208 (611)
Q Consensus 189 -i~~~~p~~~~r~~Il~~~~~ 208 (611)
+..+.|+.+...+|.++.+.
T Consensus 381 ~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 381 FVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEecCCCChHHHHHHHHHHHH
Confidence 45678999999999988654
No 365
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.87 E-value=6.4e-08 Score=106.80 Aligned_cols=50 Identities=28% Similarity=0.452 Sum_probs=43.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH 80 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~ 80 (611)
.-+++++|+++.++.+..++.. +.+++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4568999999999998887643 2499999999999999999999998754
No 366
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.87 E-value=2e-08 Score=108.50 Aligned_cols=163 Identities=18% Similarity=0.287 Sum_probs=102.5
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHH-----------hCCcEEEEc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRE-----------CGAHLTVIS 85 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~-----------l~~~~~~v~ 85 (611)
.|++++|.....+.+.+.+.... ....+|||+|++||||+++|+++.+. .+.+|+.++
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 57889999999998888775421 24579999999999999999999876 356899999
Q ss_pred ccccccccccchHHHHHHHHH-------HHHh-----hhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcC
Q 007255 86 PHSVHKAHVGESEKALREAFS-------QASS-----HALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSN 153 (611)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~f~-------~~~~-----~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~ 153 (611)
|..+..... + ..+|. .+.. ......++.|||||++.|.. ..+..|+..++..
T Consensus 286 Caal~e~ll---e---seLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~----------~~Q~kLl~~L~e~ 349 (538)
T PRK15424 286 CGAIAESLL---E---AELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL----------PLQTRLLRVLEEK 349 (538)
T ss_pred cccCChhhH---H---HHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCH----------HHHHHHHhhhhcC
Confidence 987643211 0 01111 1100 00112367999999998865 6788899998764
Q ss_pred CCC-----CCCCCcEEEEEeecCcc-------cccHHhhccCCcceEEEccCCCHHHH----HHHHHHhhcC
Q 007255 154 KPS-----KTSVPHVVVVASTNRVD-------AIDPALRRSGRFDAEVEVTVPTAEER----FEILKLYTKK 209 (611)
Q Consensus 154 ~~~-----~~~~~~v~ii~ttn~~~-------~l~~~l~~~~Rf~~~i~~~~p~~~~r----~~Il~~~~~~ 209 (611)
... .....++.+|++|+..- .+.+.+.. |+. .+.+..|...+| ..++++++..
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~ 418 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLS-ILRLQLPPLRERVADILPLAESFLKQ 418 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hhc-CCeecCCChhhchhHHHHHHHHHHHH
Confidence 311 11223578888887631 12233333 443 345555555544 4455555543
No 367
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.86 E-value=7.7e-09 Score=113.81 Aligned_cols=199 Identities=17% Similarity=0.214 Sum_probs=120.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKA 92 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~ 92 (611)
..++.++|.....+.+.+.+.... ....+|||+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 456889999999999888775421 245799999999999999999999875 568999999876331
Q ss_pred cccchHHHHHHHHHHHH-----------hhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC----
Q 007255 93 HVGESEKALREAFSQAS-----------SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK---- 157 (611)
Q Consensus 93 ~~~~~~~~l~~~f~~~~-----------~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~---- 157 (611)
.. + ..+|.... .......+++|||||++.|.+ ..+..|+..++......
T Consensus 262 ~~---~---~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~----------~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 262 LL---E---SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP----------AFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred HH---H---HHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH----------HHHHHHHHHHhcCcEEECCCC
Confidence 10 0 11121110 001123467999999999865 67888888887643211
Q ss_pred -CCCCcEEEEEeecCc-------ccccHHhhccCCcc-eEEEccCCC--HHHHHHHHHHhhcCC----CCCCccc---HH
Q 007255 158 -TSVPHVVVVASTNRV-------DAIDPALRRSGRFD-AEVEVTVPT--AEERFEILKLYTKKV----PLDANVD---LE 219 (611)
Q Consensus 158 -~~~~~v~ii~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~--~~~r~~Il~~~~~~~----~~~~~~~---~~ 219 (611)
....++.+|++|+.. ..+.+.|.. |+. ..|.+|+.. .++...++++++... ....... +.
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~ 403 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIR 403 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 112247888888753 133344443 443 346666654 345556666665432 1111111 33
Q ss_pred HHHHhccCCccccHHHHHHHHHHH
Q 007255 220 AIATSCNGYVGADLEALCREATMS 243 (611)
Q Consensus 220 ~la~~~~g~~~~dl~~l~~~a~~~ 243 (611)
.+....=--+-++|++++..++..
T Consensus 404 ~L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 404 VLMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHh
Confidence 333321112346778888777654
No 368
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=1.4e-07 Score=93.71 Aligned_cols=170 Identities=13% Similarity=0.127 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEE----------------eecch
Q 007255 295 LRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF----------------SLSGA 358 (611)
Q Consensus 295 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~----------------~~~~~ 358 (611)
+..+.+.+...+.. .+.++++||+|| +||+.+|+++|..+.|.-- .-+-+
T Consensus 7 q~~~~~~L~~~~~~------------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HP 72 (290)
T PRK07276 7 QPKVFQRFQTILEQ------------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFS 72 (290)
T ss_pred HHHHHHHHHHHHHc------------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45566667666653 366789999996 6899999999988744310 00111
Q ss_pred hhcccc-ccc--hHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeE
Q 007255 359 ELYSMY-VGE--SEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGIL 431 (611)
Q Consensus 359 ~~~~~~-~g~--~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 431 (611)
|+.--. .|. .-..++.+.+.+.. ....|++||++|.+ +....|.||+.|+ +++++++
T Consensus 73 D~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m--------------~~~AaNaLLKtLE--EPp~~t~ 136 (290)
T PRK07276 73 DVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM--------------HVNAANSLLKVIE--EPQSEIY 136 (290)
T ss_pred CeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc--------------CHHHHHHHHHHhc--CCCCCeE
Confidence 211100 111 23455555554432 22359999999977 3567899999999 6888899
Q ss_pred EEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHH
Q 007255 432 VLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCR 505 (611)
Q Consensus 432 vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~ 505 (611)
+|.+|+.++.+-|.+++ |+. ++.|+. +.+...+++.. .++. .+...++....| +++....+..
T Consensus 137 ~iL~t~~~~~lLpTI~S--Rcq-~i~f~~-~~~~~~~~L~~----~g~~--~~~a~~la~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 137 IFLLTNDENKVLPTIKS--RTQ-IFHFPK-NEAYLIQLLEQ----KGLL--KTQAELLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred EEEEECChhhCchHHHH--cce-eeeCCC-cHHHHHHHHHH----cCCC--hHHHHHHHHHCC-CHHHHHHHhC
Confidence 99999999999999998 997 778865 55555555541 2222 122333334445 6666666653
No 369
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.86 E-value=2e-08 Score=109.33 Aligned_cols=164 Identities=23% Similarity=0.243 Sum_probs=99.5
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEee----cchhhcc----
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL----SGAELYS---- 362 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~----~~~~~~~---- 362 (611)
+|.|++.+|..+.-.+....... .-.....+...++||+|+||||||++|++++.......+.. +...+..
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~-~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKN-LPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccc-cCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 47799999888766654311100 00001122234799999999999999999999875433221 1111211
Q ss_pred -ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-----------CCCCe
Q 007255 363 -MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-----------QAKGI 430 (611)
Q Consensus 363 -~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~ 430 (611)
...|+. .++. .........+++|||++.+- ......|+..|+.-. -+.++
T Consensus 283 ~~~~g~~--~~~~--G~l~~A~~Gil~iDEi~~l~--------------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 283 DPETREF--TLEG--GALVLADNGVCCIDEFDKMD--------------DSDRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred ccCcceE--EecC--ccEEecCCCEEEEechhhCC--------------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 111110 0000 00011234599999999872 445677777775321 12468
Q ss_pred EEEEecCCCc-------------ccchhccCCCCccceee-cCCCCHHHHHHHHHHHhc
Q 007255 431 LVLAATNRPH-------------AIDAALMRPGRFDLVLY-VPPPDLEARHEILRVHTR 475 (611)
Q Consensus 431 ~vI~~tn~~~-------------~ld~al~r~gRf~~~i~-~~~p~~~~r~~il~~~~~ 475 (611)
.||+|+|..+ .+++++++ |||.++. .+.|+.+....|.+..+.
T Consensus 345 ~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 8999999642 58999999 9996544 578999999999986554
No 370
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.86 E-value=3.6e-08 Score=108.63 Aligned_cols=133 Identities=20% Similarity=0.306 Sum_probs=90.6
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCC--cEEeecchhhccccccchHHHHHHHHHH---------HHhcCCcEEEEccc
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEA--SFFSLSGAELYSMYVGESEALLRNTFQR---------ARLAAPSIIFFDEA 392 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------a~~~~p~il~iDei 392 (611)
-.++||.|+||||||++|++++..+.. +|+.+..........|... +...+.. ....+..+||+||+
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~id--l~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGID--VEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchh--hhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 357999999999999999999998754 5887775333333333311 1110000 01123359999999
Q ss_pred ccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCCCc---ccchhccCCCCccceeec
Q 007255 393 DVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-----------QAKGILVLAATNRPH---AIDAALMRPGRFDLVLYV 458 (611)
Q Consensus 393 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~~tn~~~---~ld~al~r~gRf~~~i~~ 458 (611)
+.+ ....++.|+..|+.-. ....+.+|+|+|..+ .+.++++. ||..++.+
T Consensus 94 ~rl--------------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 94 NLL--------------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hhC--------------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 987 3567788888886321 124688998888765 68889998 99987776
Q ss_pred C-CCCHHHHHHHHHHHh
Q 007255 459 P-PPDLEARHEILRVHT 474 (611)
Q Consensus 459 ~-~p~~~~r~~il~~~~ 474 (611)
. .|+.++|.+|++...
T Consensus 158 ~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 158 EDVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 6 467788999988654
No 371
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.85 E-value=1.3e-08 Score=106.06 Aligned_cols=204 Identities=22% Similarity=0.269 Sum_probs=121.8
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccccc
Q 007255 13 EKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSV 89 (611)
Q Consensus 13 ~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~ 89 (611)
.....|++|+|......++.+.... ..+.+.+||+.|.+||||..+|+++.+.. +.+|+.+||..+
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 3446789999999998888776543 22356799999999999999999998765 679999999876
Q ss_pred cccccc-chHHHHHHHHHHHHhhhh-----cCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcC-----CCCCC
Q 007255 90 HKAHVG-ESEKALREAFSQASSHAL-----SGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSN-----KPSKT 158 (611)
Q Consensus 90 ~~~~~~-~~~~~l~~~f~~~~~~~~-----~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~-----~~~~~ 158 (611)
...... +....-+..|.-|..... ..+++-||+|||..|.. .++..|+..+++. ..+..
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl----------~LQaKLLRVLQEkei~rvG~t~~ 377 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPL----------PLQAKLLRVLQEKEIERVGGTKP 377 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCH----------HHHHHHHHHHhhceEEecCCCCc
Confidence 432110 000011223333332111 12356899999987643 7889999999763 22223
Q ss_pred CCCcEEEEEeecCc-------ccccHHhhccCCcceEEEccCCCHHHHHH----HHHHhhcC----CC-----CCCcccH
Q 007255 159 SVPHVVVVASTNRV-------DAIDPALRRSGRFDAEVEVTVPTAEERFE----ILKLYTKK----VP-----LDANVDL 218 (611)
Q Consensus 159 ~~~~v~ii~ttn~~-------~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~----Il~~~~~~----~~-----~~~~~~~ 218 (611)
.+-+|.||++||.. ..+-+.|-- |.. ++.+..|...+|.+ +...++.+ ++ +.++ -+
T Consensus 378 ~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~-a~ 453 (560)
T COG3829 378 IPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD-AL 453 (560)
T ss_pred eeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH-HH
Confidence 34579999999973 122233322 433 45556665555544 33333332 21 1111 12
Q ss_pred HHHH-HhccCCccccHHHHHHHHHH
Q 007255 219 EAIA-TSCNGYVGADLEALCREATM 242 (611)
Q Consensus 219 ~~la-~~~~g~~~~dl~~l~~~a~~ 242 (611)
..+. ..+.| +-|+|++++..++.
T Consensus 454 ~~L~~y~WPG-NVRELeNviER~v~ 477 (560)
T COG3829 454 ALLLRYDWPG-NVRELENVIERAVN 477 (560)
T ss_pred HHHHhCCCCc-hHHHHHHHHHHHHh
Confidence 2222 12222 34788888888775
No 372
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=2.4e-08 Score=98.83 Aligned_cols=122 Identities=14% Similarity=0.147 Sum_probs=86.2
Q ss_pred CCCCCCcceeCCCCCChHHHHHHHHHHhCCcEE--------eecchhhcccc-cc----chHHHHHHHHHHHHh----cC
Q 007255 321 ISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF--------SLSGAELYSMY-VG----ESEALLRNTFQRARL----AA 383 (611)
Q Consensus 321 ~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~--------~~~~~~~~~~~-~g----~~~~~~~~~~~~a~~----~~ 383 (611)
.+.++++||+||+|+||+.+|.++|..+.|.-- .-.-+|+.--. .| -.-..++.+.+.+.. ..
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 356789999999999999999999998865310 00011111000 11 123345555554432 22
Q ss_pred CcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCC
Q 007255 384 PSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPP 461 (611)
Q Consensus 384 p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p 461 (611)
..|++||++|.+ +....|.||+.|+ ++++++++|..|+.++.+.|.+++ |+. .+.|+++
T Consensus 96 ~kv~ii~~ad~m--------------t~~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRM--------------TLDAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred ceEEEEechhhc--------------CHHHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 349999999987 3567899999999 789999999999999999999988 887 6667654
No 373
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=3.9e-08 Score=100.19 Aligned_cols=135 Identities=22% Similarity=0.383 Sum_probs=97.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------------------------EEEEccccccccccc-----chHHH
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------------------------LTVISPHSVHKAHVG-----ESEKA 100 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~-------------------------~~~v~~~~~~~~~~~-----~~~~~ 100 (611)
+.+..+||+||+|+|||++++.+|+.+.+. ++.+++..-. ...| -....
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 456789999999999999999999987431 2333321100 0001 23456
Q ss_pred HHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhh
Q 007255 101 LREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALR 180 (611)
Q Consensus 101 l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~ 180 (611)
++.+.+.+...+..+...|++||+++.|.+ ..++.+++.+++.. .++.+|.+|+.++.+.+.++
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~----------~a~naLLk~LEep~------~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNL----------QAANSLLKVLEEPP------PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCH----------HHHHHHHHHHHhCc------CCCEEEEEeCChHhChHHHH
Confidence 777777766655555667999999998854 66788999998743 13556778888889999999
Q ss_pred ccCCcceEEEccCCCHHHHHHHHHH
Q 007255 181 RSGRFDAEVEVTVPTAEERFEILKL 205 (611)
Q Consensus 181 ~~~Rf~~~i~~~~p~~~~r~~Il~~ 205 (611)
+ |+. .+.|++|+.++..+.+..
T Consensus 162 S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 8 874 889999999998887764
No 374
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.85 E-value=1.3e-08 Score=110.15 Aligned_cols=165 Identities=18% Similarity=0.254 Sum_probs=102.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKA 92 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~ 92 (611)
..|++++|.....+.+.+.+... .....+|||+|++||||+++|+++.+.. +.+|+.++|..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 45788999999999888877542 1235799999999999999999998764 568999999876431
Q ss_pred cccchHHHHHHHHH-------HHHh-----hhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC----
Q 007255 93 HVGESEKALREAFS-------QASS-----HALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS---- 156 (611)
Q Consensus 93 ~~~~~~~~l~~~f~-------~~~~-----~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---- 156 (611)
.. + ..+|. .+.. ......++.|||||++.|.. ..+..|+..++.....
T Consensus 278 ll---e---seLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~----------~~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 278 LL---E---AELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPL----------PLQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HH---H---HHhcCCcccccccccccccccchhhcCCceEEecChHhCCH----------HHHHHHHHHHhcCcEEecCC
Confidence 10 0 01111 1000 00112467999999998865 6788899998764321
Q ss_pred -CCCCCcEEEEEeecCcc-------cccHHhhccCCcc-eEEEccCCCH--HHHHHHHHHhhcC
Q 007255 157 -KTSVPHVVVVASTNRVD-------AIDPALRRSGRFD-AEVEVTVPTA--EERFEILKLYTKK 209 (611)
Q Consensus 157 -~~~~~~v~ii~ttn~~~-------~l~~~l~~~~Rf~-~~i~~~~p~~--~~r~~Il~~~~~~ 209 (611)
.....++.+|++|+..- .+.+.+.. |+. ..|.+|+... ++...++.+++..
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 11223467888887631 23334433 543 3445555422 2444455555543
No 375
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.82 E-value=1.7e-09 Score=92.28 Aligned_cols=108 Identities=29% Similarity=0.361 Sum_probs=59.5
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEeecc------hhhccccccchHHHHHHHHHHHH-hcCCcEEEEccccccccc
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSG------AELYSMYVGESEALLRNTFQRAR-LAAPSIIFFDEADVVGAK 398 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~a~-~~~p~il~iDeid~l~~~ 398 (611)
|+||.|+||+|||++|+++|..++..|..+.. +|+.+-.+-+... .-|...+ -.-..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNra--- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRA--- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccC---
Confidence 58999999999999999999999999987755 3333321111000 0000000 000239999999765
Q ss_pred CCCCCCCCcchhHHHHHHHHHHhcCC---------CCCCCeEEEEecCCCc-----ccchhccCCCCc
Q 007255 399 RGGSSSTSITVGERLLSTLLTEMDGL---------EQAKGILVLAATNRPH-----AIDAALMRPGRF 452 (611)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vI~~tn~~~-----~ld~al~r~gRf 452 (611)
..+.+++||..|... .-++.++||+|-|..+ .++.+++. ||
T Consensus 75 -----------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 -----------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -----------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 356789999888521 2234588998888766 57777777 76
No 376
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.82 E-value=2.3e-08 Score=112.73 Aligned_cols=384 Identities=16% Similarity=0.081 Sum_probs=190.8
Q ss_pred CCCceEEEEcCCCCcHHHHHH-HHHHHhCCcEEEEcccccccccccchHHHHHHHHHHHHhhhhc-----------CCCe
Q 007255 51 KWPRGLLLYGPPGTGKTSLVR-AVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALS-----------GKPS 118 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~-~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~-----------~~~~ 118 (611)
...+++++|||||+|||++.. ++-.++...++.+|-+.-. .+...+ .++++....... .+..
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~l-s~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKL-SVLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHH-HHHHhhceeeccCCeEEEccCcchhhe
Confidence 356899999999999999754 5566666777776654321 111122 222222211111 1235
Q ss_pred EEEEccccccCCCCCCCchhhHHHHHHHHHHHhcC------CCCCCCCCcEEEEEeecCcc-----cccHHhhccCCcce
Q 007255 119 VVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSN------KPSKTSVPHVVVVASTNRVD-----AIDPALRRSGRFDA 187 (611)
Q Consensus 119 il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~------~~~~~~~~~v~ii~ttn~~~-----~l~~~l~~~~Rf~~ 187 (611)
|||+|||+ |...++...+.. +-.+..+++.. ........++++.|+||++. ..+.++.| | ..
T Consensus 1566 VLFcDeIn-Lp~~~~y~~~~v---I~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r--~-~v 1638 (3164)
T COG5245 1566 VLFCDEIN-LPYGFEYYPPTV---IVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR--K-PV 1638 (3164)
T ss_pred EEEeeccC-CccccccCCCce---EEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--C-ce
Confidence 99999998 555444433322 22222333331 11223446799999999975 33466665 3 35
Q ss_pred EEEccCCCHHHHHHHHHHhhcCCCCCC-cc------------c--------HHHHHHhccCCccccHHHHHHHHHH----
Q 007255 188 EVEVTVPTAEERFEILKLYTKKVPLDA-NV------------D--------LEAIATSCNGYVGADLEALCREATM---- 242 (611)
Q Consensus 188 ~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~------------~--------~~~la~~~~g~~~~dl~~l~~~a~~---- 242 (611)
.+++..|....+.+|+..++.+..+-. .. . .....+..-||+++++-.+++....
T Consensus 1639 ~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~yaeT 1718 (3164)
T COG5245 1639 FVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYAET 1718 (3164)
T ss_pred EEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHHhc
Confidence 678889999999999988775532111 10 0 1111112246788877555443332
Q ss_pred ---------------HHhhhcccccccccccchhHHHHHHHHhccCCcccccccccCCCccccccc--chhHH-HHHHHH
Q 007255 243 ---------------SAVKRSSDANECAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIG--GLRDL-KKKLQQ 304 (611)
Q Consensus 243 ---------------~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~~~~~~~~~~~~~~~~~~i~--g~~~~-k~~l~~ 304 (611)
.+++...+....+..-+..++++.......-+.... .........|++|. |++.+ ++.+..
T Consensus 1719 ~~~t~~~slI~~wy~ea~r~~~dRLV~qkE~st~~q~ly~~~~~~~~e~~~-g~i~e~~I~fS~Il~~g~~~l~k~dl~~ 1797 (3164)
T COG5245 1719 RIDTPDVSLIIDWYCEAIREKIDRLVQQKESSTSRQDLYDFGLRAIREMIA-GHIGEAEITFSMILFFGMACLLKKDLAV 1797 (3164)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhh-cccchhhhhHHHHHhccHHHHhhhhHHH
Confidence 222222221111111111222222111111110000 00111223344432 22222 222222
Q ss_pred Hhhc-------------------cCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccccc
Q 007255 305 AVEW-------------------PIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYV 365 (611)
Q Consensus 305 ~~~~-------------------~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~ 365 (611)
.++. .+.|.-.+.+.-.....+.++.|..|+||+.+.+.+|..-+.+++.+....- ...
T Consensus 1798 fvEe~~K~F~sshl~v~~V~~~~~l~HiLr~~R~l~~vggh~~l~g~~~~g~~~~~efvcwlN~~~m~e~~~hr~--~~~ 1875 (3164)
T COG5245 1798 FVEEVRKIFGSSHLDVEAVAYKDALLHILRSRRGLLVVGGHGVLKGVLIRGACDAREFVCWLNPRNMREIFGHRD--ELT 1875 (3164)
T ss_pred HHHHHHHHhcccCCCCceeeeHHHHHHHHHHHHHHHHhccchhhhhhhhhhhHHHHHHHHHhCccchhhhhcccc--cch
Confidence 2210 1112222333223445678999999999999999999776766665543221 124
Q ss_pred cchHHHHHHHHHHHH-hcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccch
Q 007255 366 GESEALLRNTFQRAR-LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDA 444 (611)
Q Consensus 366 g~~~~~~~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~ 444 (611)
|+.+..++...-.+. ......+||||---+ ...+|..|..+-.+.++..+...|....|..
T Consensus 1876 ~Df~d~lk~~~~~~~~~~~r~Cl~I~Esi~~------------------es~fLe~~N~LL~n~~~~~lf~gne~~~I~~ 1937 (3164)
T COG5245 1876 GDFRDSLKVQDLRRNIHGGRECLFIFESIPV------------------ESSFLEDFNPLLDNNRFLCLFSGNERIRIPE 1937 (3164)
T ss_pred hhHHHHHHHHHHhccccCCceEEEEecCCcc------------------chHHHHHhhhhhhccccchhccchhHHHHHH
Confidence 455554444333322 223448888874222 1334444444445667777777777666666
Q ss_pred hccCCCCccceeecCCCCHHHHHHHHH
Q 007255 445 ALMRPGRFDLVLYVPPPDLEARHEILR 471 (611)
Q Consensus 445 al~r~gRf~~~i~~~~p~~~~r~~il~ 471 (611)
.+....++. .+..-++++...++-
T Consensus 1938 nlr~~~es~---~L~~dTe~tlt~vFl 1961 (3164)
T COG5245 1938 NLRFVFEST---SLEKDTEATLTRVFL 1961 (3164)
T ss_pred HHHhhhhcc---ccccCCHHHHHHHHH
Confidence 555422222 233455666666665
No 377
>PRK12377 putative replication protein; Provisional
Probab=98.82 E-value=1.7e-08 Score=98.38 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=47.9
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccchH--HHHHHHHHHHHhcCCcEEEEcccccc
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESE--ALLRNTFQRARLAAPSIIFFDEADVV 395 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~a~~~~p~il~iDeid~l 395 (611)
.+++|+||||||||+||.|+|+++ +..++.++..++......... .....+++.. ...++|+|||++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 579999999999999999999988 677788888777664321100 0111222222 45669999999754
No 378
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.82 E-value=3.3e-08 Score=107.88 Aligned_cols=200 Identities=20% Similarity=0.254 Sum_probs=119.8
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccccccccc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAH 93 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~ 93 (611)
...+++|.....+.+.+.+... ...+.+|||+|++||||+++|+++.... +.+++.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 4578999999999888877552 1245799999999999999999998875 4689999998764321
Q ss_pred ccchHHHHHHHHHHHH-----------hhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----C
Q 007255 94 VGESEKALREAFSQAS-----------SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----K 157 (611)
Q Consensus 94 ~~~~~~~l~~~f~~~~-----------~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~ 157 (611)
. + ..+|.... .......++.|||||++.|.. ..+..|+..++..... .
T Consensus 254 ~---e---~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 254 A---E---SELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPL----------ALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred H---H---HHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCH----------HHHHHHHHHHhcCCEeeCCCCc
Confidence 1 0 01111100 001122467899999999865 6788888888764321 1
Q ss_pred CCCCcEEEEEeecCc-------ccccHHhhccCCcceEEEccCCCHHHH----HHHHHHhhcCC----CCC-Cccc---H
Q 007255 158 TSVPHVVVVASTNRV-------DAIDPALRRSGRFDAEVEVTVPTAEER----FEILKLYTKKV----PLD-ANVD---L 218 (611)
Q Consensus 158 ~~~~~v~ii~ttn~~-------~~l~~~l~~~~Rf~~~i~~~~p~~~~r----~~Il~~~~~~~----~~~-~~~~---~ 218 (611)
....++.+|++|+.. ..+.+.+.. |+. .+.+..|...+| ..++++++... ... .... +
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~ 394 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQ 394 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 122357889988763 134455544 543 344444544444 34445544332 111 1111 2
Q ss_pred HHHHHhccCCccccHHHHHHHHHHHHhh
Q 007255 219 EAIATSCNGYVGADLEALCREATMSAVK 246 (611)
Q Consensus 219 ~~la~~~~g~~~~dl~~l~~~a~~~a~~ 246 (611)
..+....=-.+-++|++++..++..+..
T Consensus 395 ~~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 395 AALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 2222221112457888888888776543
No 379
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=1.7e-07 Score=90.74 Aligned_cols=121 Identities=11% Similarity=0.060 Sum_probs=82.5
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHhCCcEE--------------eecchhhcccccc---chHHHHHHHHHHHH----
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEASFF--------------SLSGAELYSMYVG---ESEALLRNTFQRAR---- 380 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~--------------~~~~~~~~~~~~g---~~~~~~~~~~~~a~---- 380 (611)
.+++++||+||+|+||..+|.++|..+-|.-- .-+-+|+.--+.. -....++.+.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 56789999999999999999999988844310 0011111110000 11223333333321
Q ss_pred h-cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecC
Q 007255 381 L-AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVP 459 (611)
Q Consensus 381 ~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~ 459 (611)
. ....|++|+++|.+ +....|.||+.++ +++.++++|.+|+.++.+-|.+++ |+. .+.|+
T Consensus 85 e~~~~KV~II~~ae~m--------------~~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL--------------NKQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh--------------CHHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 1 12348888888766 4678899999999 799999999999999999999998 887 46666
Q ss_pred CC
Q 007255 460 PP 461 (611)
Q Consensus 460 ~p 461 (611)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 66
No 380
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.81 E-value=4.3e-08 Score=106.96 Aligned_cols=154 Identities=19% Similarity=0.267 Sum_probs=96.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKA 92 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~ 92 (611)
..|++++|.....+.+.+.+... .....+|||+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 57788999988877777665431 1134689999999999999999987654 368999999876431
Q ss_pred c-----ccchH-------HHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC---
Q 007255 93 H-----VGESE-------KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK--- 157 (611)
Q Consensus 93 ~-----~~~~~-------~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--- 157 (611)
. +|... ......|+. ..++.|||||++.|.+ ..+..|+++++......
T Consensus 270 ~~e~elFG~~~~~~~~~~~~~~g~~e~-------a~~GtL~LdeI~~L~~----------~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 270 VVESELFGHAPGAYPNALEGKKGFFEQ-------ANGGSVLLDEIGEMSP----------RMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred HHHHHhcCCCCCCcCCcccCCCChhhh-------cCCCEEEEeChhhCCH----------HHHHHHHHHHhcCCcccCCC
Confidence 1 11000 000111222 2367899999998865 66788888887643111
Q ss_pred --CCCCcEEEEEeecCc-------ccccHHhhccCCcceEEEccCCCHHHHH
Q 007255 158 --TSVPHVVVVASTNRV-------DAIDPALRRSGRFDAEVEVTVPTAEERF 200 (611)
Q Consensus 158 --~~~~~v~ii~ttn~~-------~~l~~~l~~~~Rf~~~i~~~~p~~~~r~ 200 (611)
....++.+|++|+.. ..+.+.+.. |+. .+.+..|...+|.
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~ 381 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRP 381 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccCh
Confidence 112357788887653 134566665 654 3444444444443
No 381
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.81 E-value=1.1e-07 Score=96.58 Aligned_cols=160 Identities=24% Similarity=0.387 Sum_probs=105.0
Q ss_pred cccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-------CCcEEeecchh
Q 007255 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-------EASFFSLSGAE 359 (611)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-------~~~~~~~~~~~ 359 (611)
..|.-++|++..|..|.-.... +...++|+-|+.|||||++++++|.-+ ||+|- -++.+
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~-cdP~~ 79 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFN-CDPDD 79 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCC-CCCCC
Confidence 4577889999999887544332 334689999999999999999999877 33221 00000
Q ss_pred --------------------------hccccccchHHH------HHHHHH-HHHhc--------CCcEEEEccccccccc
Q 007255 360 --------------------------LYSMYVGESEAL------LRNTFQ-RARLA--------APSIIFFDEADVVGAK 398 (611)
Q Consensus 360 --------------------------~~~~~~g~~~~~------~~~~~~-~a~~~--------~p~il~iDeid~l~~~ 398 (611)
+..--.|.++.. +.+..+ -.+.. +..|+||||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL--- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL--- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc---
Confidence 011011222221 111111 01111 2349999999877
Q ss_pred CCCCCCCCcchhHHHHHHHHHHhcC-----------CCCCCCeEEEEecCCCc-ccchhccCCCCccceeecCCC-CHHH
Q 007255 399 RGGSSSTSITVGERLLSTLLTEMDG-----------LEQAKGILVLAATNRPH-AIDAALMRPGRFDLVLYVPPP-DLEA 465 (611)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~ll~~l~~-----------~~~~~~~~vI~~tn~~~-~ld~al~r~gRf~~~i~~~~p-~~~~ 465 (611)
.+.+++.||..+.. +..+-++++|||+|..+ +|-|.|+. ||...+.+..| +.++
T Consensus 157 -----------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~ 223 (423)
T COG1239 157 -----------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEE 223 (423)
T ss_pred -----------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHH
Confidence 36788899887753 12345799999999755 68899998 99999988765 6688
Q ss_pred HHHHHHHHhcC
Q 007255 466 RHEILRVHTRN 476 (611)
Q Consensus 466 r~~il~~~~~~ 476 (611)
|.+|++.....
T Consensus 224 rv~Ii~r~~~f 234 (423)
T COG1239 224 RVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHh
Confidence 99999866553
No 382
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.81 E-value=2.4e-08 Score=104.30 Aligned_cols=199 Identities=22% Similarity=0.305 Sum_probs=124.6
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccccccccc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAH 93 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~ 93 (611)
....++|.....+++.+.+.... ....+||+.|++||||..+|++|.+.. +.+|+.+||..+....
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA-----------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA-----------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 35679999999999988875421 245799999999999999999998766 5699999998764321
Q ss_pred -----ccchH-------HHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----
Q 007255 94 -----VGESE-------KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS----- 156 (611)
Q Consensus 94 -----~~~~~-------~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~----- 156 (611)
+|... ..-...|+.+ .++.||+|||..|.. .+|..|+..++.....
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A-------~GGTLfLDEI~~mpl----------~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQA-------NGGTLFLDEIGEMPL----------ELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEc-------CCceEEeeccccCCH----------HHHHHHHHHHHcCeeEecCCC
Confidence 11000 0011123322 467999999987754 7889999999864321
Q ss_pred CCCCCcEEEEEeecCc-------ccccHHhhccCCcceEEEccCCCHHHHHH----HHHHhhcC----CCCC-CcccHHH
Q 007255 157 KTSVPHVVVVASTNRV-------DAIDPALRRSGRFDAEVEVTVPTAEERFE----ILKLYTKK----VPLD-ANVDLEA 220 (611)
Q Consensus 157 ~~~~~~v~ii~ttn~~-------~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~----Il~~~~~~----~~~~-~~~~~~~ 220 (611)
..-.-+|.||++||.. ..+-+.|-- |+. ++.+..|...+|.+ ++++++++ .+.. ....-+.
T Consensus 271 ~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a 347 (464)
T COG2204 271 KPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEA 347 (464)
T ss_pred cccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 2223468999999973 133344443 553 66777777766665 44555443 2211 1222222
Q ss_pred HHHh-ccCCc--cccHHHHHHHHHHHHhh
Q 007255 221 IATS-CNGYV--GADLEALCREATMSAVK 246 (611)
Q Consensus 221 la~~-~~g~~--~~dl~~l~~~a~~~a~~ 246 (611)
+... ...|. -++|++++..++..+-.
T Consensus 348 ~~~L~~y~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 348 LAALLAYDWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHhcCCc
Confidence 2222 23343 36788888887765433
No 383
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.80 E-value=7.7e-08 Score=109.03 Aligned_cols=198 Identities=19% Similarity=0.253 Sum_probs=117.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKA 92 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~ 92 (611)
..+++++|.....+.+.+.+.... ....+|||+|++|||||++|+++.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 456789999999998887765421 234699999999999999999998765 568999999876421
Q ss_pred c-----ccchH-------HHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC----
Q 007255 93 H-----VGESE-------KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS---- 156 (611)
Q Consensus 93 ~-----~~~~~-------~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---- 156 (611)
. +|... ......++. ..+++|||||++.+.. ..+..|+..++.....
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~-------a~~GtL~Ldei~~L~~----------~~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFEL-------ADKSSLFLDEVGDMPL----------ELQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHh-------cCCCeEEEechhhCCH----------HHHHHHHHHHHhCCEEeCCC
Confidence 1 11100 001112222 2367999999998855 6788888888764211
Q ss_pred -CCCCCcEEEEEeecCcc-------cccHHhhccCCcceEEEccCCCHHHHHH----HHHHhhcCC----CCCC-ccc--
Q 007255 157 -KTSVPHVVVVASTNRVD-------AIDPALRRSGRFDAEVEVTVPTAEERFE----ILKLYTKKV----PLDA-NVD-- 217 (611)
Q Consensus 157 -~~~~~~v~ii~ttn~~~-------~l~~~l~~~~Rf~~~i~~~~p~~~~r~~----Il~~~~~~~----~~~~-~~~-- 217 (611)
.....++.+|++|+..- .+.+.+.. |+. .+.+..|...+|.+ ++++++... +... ...
T Consensus 505 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~ 581 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE 581 (686)
T ss_pred CCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 11224678899887631 23333433 443 44555565555544 445544322 1111 111
Q ss_pred -HHHHHHhccCCccccHHHHHHHHHHHH
Q 007255 218 -LEAIATSCNGYVGADLEALCREATMSA 244 (611)
Q Consensus 218 -~~~la~~~~g~~~~dl~~l~~~a~~~a 244 (611)
++.+....=-.+-++|++++..++..+
T Consensus 582 al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 582 TLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 233322211124477888888887643
No 384
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.80 E-value=6.2e-08 Score=99.30 Aligned_cols=169 Identities=19% Similarity=0.177 Sum_probs=97.9
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccc-----cch-------HHHHHHHHHHHHhcCCcEEE
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYV-----GES-------EALLRNTFQRARLAAPSIIF 388 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~-----g~~-------~~~~~~~~~~a~~~~p~il~ 388 (611)
..++||+|++||||+++|+++.... +.+|+.++++.+..... |.. ...-...|.. .....||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~---a~gGtL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFER---ADGGTLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhh---CCCCEEE
Confidence 3569999999999999999998765 47999999986532110 000 0000011222 2356999
Q ss_pred EcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCCc-------ccchhccCCCCc
Q 007255 389 FDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE---------QAKGILVLAATNRPH-------AIDAALMRPGRF 452 (611)
Q Consensus 389 iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~~tn~~~-------~ld~al~r~gRf 452 (611)
||||+.+ ...++..|+..++.-. ...++.+|++|+..- .+.+.|.. |+
T Consensus 99 Ldei~~L--------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl 162 (329)
T TIGR02974 99 LDELATA--------------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RL 162 (329)
T ss_pred eCChHhC--------------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hh
Confidence 9999987 2456677777775321 123578888887532 34455555 66
Q ss_pred c-ceeecCCCC--HHHHHHHHHHHhcC----CCC-----CCcccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007255 453 D-LVLYVPPPD--LEARHEILRVHTRN----MKV-----GDDVDLRSIAEETELFTGAELEGLCREAGIVA 511 (611)
Q Consensus 453 ~-~~i~~~~p~--~~~r~~il~~~~~~----~~~-----~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a 511 (611)
. ..|.+|+.. .++...+++.++.. +.. .++..+..|.....--+-+++++++..+...+
T Consensus 163 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 163 AFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred cchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 4 345554433 13334444443322 111 12333555555553336678888877766543
No 385
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.80 E-value=4.9e-08 Score=104.28 Aligned_cols=143 Identities=24% Similarity=0.307 Sum_probs=88.3
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhC----CcEEeec------c
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE----ASFFSLS------G 357 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~----~~~~~~~------~ 357 (611)
.+.++.|+..+++.+.-.+ ...++++|+||||||||++++.++..+. ...+.+. .
T Consensus 189 d~~~v~Gq~~~~~al~laa---------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA---------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhheec---------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 6778889887776543222 3456899999999999999999997652 1111110 0
Q ss_pred h-----hh-----ccc--------cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHH
Q 007255 358 A-----EL-----YSM--------YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLT 419 (611)
Q Consensus 358 ~-----~~-----~~~--------~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 419 (611)
. .+ ... ..|.....-...+.. .+..+||+||++.+ ....+..|+.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~---A~gGvLfLDEi~e~--------------~~~~~~~L~~ 316 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISL---AHNGVLFLDELPEF--------------ERRTLDALRE 316 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhh---ccCCEEecCCchhC--------------CHHHHHHHHH
Confidence 0 00 000 111111011112222 23449999999765 3467778887
Q ss_pred HhcCCC-----------CCCCeEEEEecCCCc---------------------ccchhccCCCCccceeecCCCCHH
Q 007255 420 EMDGLE-----------QAKGILVLAATNRPH---------------------AIDAALMRPGRFDLVLYVPPPDLE 464 (611)
Q Consensus 420 ~l~~~~-----------~~~~~~vI~~tn~~~---------------------~ld~al~r~gRf~~~i~~~~p~~~ 464 (611)
.|+.-. ...++.+|+|+|... .+..+++. |||.++.++.|+.+
T Consensus 317 ~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 317 PIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 775321 134689999999642 36778888 99999999988643
No 386
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.80 E-value=8.3e-08 Score=94.39 Aligned_cols=219 Identities=20% Similarity=0.243 Sum_probs=118.5
Q ss_pred ccccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----
Q 007255 4 KGRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG----- 78 (611)
Q Consensus 4 ~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~----- 78 (611)
.-+|.......| +|...+.+.|...-.. +..|.. .-..++||+|++|.|||++++.+++...
T Consensus 25 ~eRI~~i~~~rW------IgY~~A~~~L~~L~~L-l~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~ 91 (302)
T PF05621_consen 25 EERIAYIRADRW------IGYPRAKEALDRLEEL-LEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDE 91 (302)
T ss_pred HHHHHHHhcCCe------ecCHHHHHHHHHHHHH-HhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCC
Confidence 345556666777 6776666555443221 222221 2346899999999999999999987652
Q ss_pred ----CcEEEEcccccccc------------cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHH
Q 007255 79 ----AHLTVISPHSVHKA------------HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRI 142 (611)
Q Consensus 79 ----~~~~~v~~~~~~~~------------~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~ 142 (611)
.+++.+.+..-.+. .+.............+.......+.-+|+|||+|.+..... .-
T Consensus 92 ~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~-------~~ 164 (302)
T PF05621_consen 92 DAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY-------RK 164 (302)
T ss_pred CCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH-------HH
Confidence 24555543211100 00000011111111222222233467999999999754321 22
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEEeecCcc--cccHHhhccCCcceEEEccCC-CHHHHHHHHHHhhcCCCCCCc----
Q 007255 143 ASQLFTLMDSNKPSKTSVPHVVVVASTNRVD--AIDPALRRSGRFDAEVEVTVP-TAEERFEILKLYTKKVPLDAN---- 215 (611)
Q Consensus 143 ~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~--~l~~~l~~~~Rf~~~i~~~~p-~~~~r~~Il~~~~~~~~~~~~---- 215 (611)
+..+++.+........ -.++.+||..-.. .-|+-+.+ ||. .+.+|.- ..++...++..+....++...
T Consensus 165 qr~~Ln~LK~L~NeL~--ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~ 239 (302)
T PF05621_consen 165 QREFLNALKFLGNELQ--IPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLA 239 (302)
T ss_pred HHHHHHHHHHHhhccC--CCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCC
Confidence 3444444433222111 1355566543333 33677877 996 5566553 344666677776665554322
Q ss_pred --ccHHHHHHhccCCccccHHHHHHHHHHHHhhhc
Q 007255 216 --VDLEAIATSCNGYVGADLEALCREATMSAVKRS 248 (611)
Q Consensus 216 --~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~ 248 (611)
.-...+-..++|..| ++..++..|+..|++..
T Consensus 240 ~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 240 SPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSG 273 (302)
T ss_pred CHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcC
Confidence 224566677887766 47778888888877743
No 387
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.78 E-value=9.4e-08 Score=98.06 Aligned_cols=193 Identities=17% Similarity=0.149 Sum_probs=112.2
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccc-
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM- 363 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~- 363 (611)
.+++++|....-+.+.+.+.... ....++||+|++||||+++|+++.... +.+|+.+++..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 35678888777777766665321 234569999999999999999998765 468999999876321
Q ss_pred ----cccchH-------HHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--C----
Q 007255 364 ----YVGESE-------ALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--Q---- 426 (611)
Q Consensus 364 ----~~g~~~-------~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~---- 426 (611)
..|... ......+. ......|||||++.+. ...+..|+..++... +
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~---~a~gGtL~l~~i~~L~--------------~~~Q~~L~~~l~~~~~~~~g~~ 135 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAP--------------MLVQEKLLRVIEYGELERVGGS 135 (326)
T ss_pred HHHHHccccccccCCcccccCCchh---ccCCCeEEeCChhhCC--------------HHHHHHHHHHHhcCcEEeCCCC
Confidence 001000 00011122 2334599999999882 456677777775321 1
Q ss_pred ---CCCeEEEEecCCC-------cccchhccCCCCcc-ceeecCCCCH--HHHHHHHHHHh----cCCCC-----CCccc
Q 007255 427 ---AKGILVLAATNRP-------HAIDAALMRPGRFD-LVLYVPPPDL--EARHEILRVHT----RNMKV-----GDDVD 484 (611)
Q Consensus 427 ---~~~~~vI~~tn~~-------~~ld~al~r~gRf~-~~i~~~~p~~--~~r~~il~~~~----~~~~~-----~~~~~ 484 (611)
..++.+|++|+.. ..+.+.|.. ||. ..|.+|+... ++.-.+++.++ +++.. .++..
T Consensus 136 ~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a 213 (326)
T PRK11608 136 QPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERA 213 (326)
T ss_pred ceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 1247888887763 234455665 674 4555544322 23334444433 22221 12233
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007255 485 LRSIAEETELFTGAELEGLCREAGIV 510 (611)
Q Consensus 485 ~~~la~~~~g~s~~~i~~~~~~a~~~ 510 (611)
+..|.....=-+-+++++++..+...
T Consensus 214 l~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 214 RETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 45555554433667888888877654
No 388
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.77 E-value=3.7e-08 Score=101.37 Aligned_cols=205 Identities=22% Similarity=0.272 Sum_probs=122.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKA 92 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~ 92 (611)
..+..|+|...+...+.+.+..-. ..+.+|||.|.+||||..+|++|.+.. ..+|+.+||..+...
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA-----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVA-----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHh-----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 456789999999999988876521 245799999999999999999998876 568999999876532
Q ss_pred ccc-chHHHHHHHHHHHHhh----hhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCC-----CCCCCCCc
Q 007255 93 HVG-ESEKALREAFSQASSH----ALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK-----PSKTSVPH 162 (611)
Q Consensus 93 ~~~-~~~~~l~~~f~~~~~~----~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~~~~~ 162 (611)
... +.....+..|.-+... .....++-||+|||..|.. .++..|+..+.+.. .+.+-.-.
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL----------~lQaKLLRvLQegEieRvG~~r~ikVD 358 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL----------ALQAKLLRVLQEGEIERVGGDRTIKVD 358 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH----------HHHHHHHHHHhhcceeecCCCceeEEE
Confidence 110 0001112233322211 1122467999999977754 77888998887632 22223346
Q ss_pred EEEEEeecCcccccHHhhccCCcc-------eEEEccCCCHHHHHH----HHHHhhcC----CCCCC-cc---cHHHHHH
Q 007255 163 VVVVASTNRVDAIDPALRRSGRFD-------AEVEVTVPTAEERFE----ILKLYTKK----VPLDA-NV---DLEAIAT 223 (611)
Q Consensus 163 v~ii~ttn~~~~l~~~l~~~~Rf~-------~~i~~~~p~~~~r~~----Il~~~~~~----~~~~~-~~---~~~~la~ 223 (611)
|.||++||. ++...++ .|+|- .++-+..|...+|.. +..+++++ .+... .. -++.+..
T Consensus 359 VRiIAATNR--DL~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 359 VRVIAATNR--DLEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred EEEEeccch--hHHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 899999997 3444443 23442 133334444444332 33333332 22211 11 1333332
Q ss_pred hccCCccccHHHHHHHHHHHH
Q 007255 224 SCNGYVGADLEALCREATMSA 244 (611)
Q Consensus 224 ~~~g~~~~dl~~l~~~a~~~a 244 (611)
..---+-+++++++..|+..+
T Consensus 436 y~wPGNVRELen~veRavlla 456 (550)
T COG3604 436 YEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCCcHHHHHHHHHHHHHHh
Confidence 221124488999999999877
No 389
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.77 E-value=5.4e-08 Score=89.50 Aligned_cols=98 Identities=21% Similarity=0.332 Sum_probs=63.5
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhcccc-----ccch-------HHHHHHHHHHHHhcCCcEEE
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMY-----VGES-------EALLRNTFQRARLAAPSIIF 388 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~-----~g~~-------~~~~~~~~~~a~~~~p~il~ 388 (611)
+.++||+|++||||+.+|+++.+.. +.+|+.++++.+.... .|.. ...-..++..| ....||
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A---~~GtL~ 98 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQA---NGGTLF 98 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHT---TTSEEE
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeec---cceEEe
Confidence 3579999999999999999999876 5799999998764321 0100 00011233333 344999
Q ss_pred EcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--C-------CCCeEEEEecCC
Q 007255 389 FDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--Q-------AKGILVLAATNR 438 (611)
Q Consensus 389 iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~-------~~~~~vI~~tn~ 438 (611)
||||+.+ ...++..|+..|+.-. + .-++.+|++|+.
T Consensus 99 Ld~I~~L--------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 99 LDEIEDL--------------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp EETGGGS---------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ecchhhh--------------HHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 9999988 3567788888876311 1 126889988885
No 390
>PRK08116 hypothetical protein; Validated
Probab=98.77 E-value=1.3e-08 Score=101.06 Aligned_cols=123 Identities=14% Similarity=0.093 Sum_probs=73.9
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhcccccc----chHHHHHHHHHHHHhcCCcEEEEccccccc
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVG----ESEALLRNTFQRARLAAPSIIFFDEADVVG 396 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~a~~~~p~il~iDeid~l~ 396 (611)
..+++|+|++|||||+||.++|+++ +.+++.++.+++...+.. ........+++.. ...++|+|||++..-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 3579999999999999999999986 788888888887654321 1111122233322 244599999995421
Q ss_pred ccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCC-cc----cchhccCCCCc---cceeecCCCCH
Q 007255 397 AKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRP-HA----IDAALMRPGRF---DLVLYVPPPDL 463 (611)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~-~~----ld~al~r~gRf---~~~i~~~~p~~ 463 (611)
........|...++.....+.. +|.|||.+ ++ ++..+.. |+ ...|.++.||.
T Consensus 192 ------------~t~~~~~~l~~iin~r~~~~~~-~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ------------DTEWAREKVYNIIDSRYRKGLP-TIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ------------CCHHHHHHHHHHHHHHHHCCCC-EEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1123345555555543333333 55577764 34 3555555 54 23466666665
No 391
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.76 E-value=3.1e-07 Score=98.12 Aligned_cols=201 Identities=23% Similarity=0.280 Sum_probs=119.6
Q ss_pred ccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----------CcEEEEccccc
Q 007255 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG----------AHLTVISPHSV 89 (611)
Q Consensus 20 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~----------~~~~~v~~~~~ 89 (611)
.+.+.+.....|..++...+... .....+.+.|-||||||..++.+.++|. ..++++|+-.+
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~--------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQ--------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCC--------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 34556666666666665432220 1224799999999999999999998763 35677776544
Q ss_pred cc----------ccccchH------HHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcC
Q 007255 90 HK----------AHVGESE------KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSN 153 (611)
Q Consensus 90 ~~----------~~~~~~~------~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~ 153 (611)
.. ...|+.. ..+...|. .......++|++|||.|.|.... +.-|+++++--
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~---~~k~~~~~~VvLiDElD~Lvtr~----------QdVlYn~fdWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFT---VPKPKRSTTVVLIDELDILVTRS----------QDVLYNIFDWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc---cCCCCCCCEEEEeccHHHHhccc----------HHHHHHHhcCC
Confidence 32 1122211 22333333 11124468999999999997632 45566666542
Q ss_pred CCCCCCCCcEEEEEeecCcc----cccHHhhccCCcc-eEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCC
Q 007255 154 KPSKTSVPHVVVVASTNRVD----AIDPALRRSGRFD-AEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGY 228 (611)
Q Consensus 154 ~~~~~~~~~v~ii~ttn~~~----~l~~~l~~~~Rf~-~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~ 228 (611)
.. ...+++||+..|..+ .+...+.+ |.+ ..+.|.+++-.++++|+...++......+.-++.++......
T Consensus 536 t~---~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAav 610 (767)
T KOG1514|consen 536 TL---KNSKLVVIAIANTMDLPERLLMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAV 610 (767)
T ss_pred cC---CCCceEEEEecccccCHHHHhccchhh--hccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhc
Confidence 21 233678888877754 22333334 443 479999999999999999998877433332344444443333
Q ss_pred cc--ccHHHHHHHHHHHHhh
Q 007255 229 VG--ADLEALCREATMSAVK 246 (611)
Q Consensus 229 ~~--~dl~~l~~~a~~~a~~ 246 (611)
+| +....+|+.|...+-.
T Consensus 611 SGDaRraldic~RA~Eia~~ 630 (767)
T KOG1514|consen 611 SGDARRALDICRRAAEIAEE 630 (767)
T ss_pred cccHHHHHHHHHHHHHHhhh
Confidence 33 2334556666544433
No 392
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.76 E-value=2.9e-07 Score=99.11 Aligned_cols=213 Identities=19% Similarity=0.259 Sum_probs=124.8
Q ss_pred ccccccc------ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 007255 9 SEHNEKW------KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (611)
Q Consensus 9 ~~~~~~~------~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~ 82 (611)
...+..| +.+++++-..+-+++++.++..... +....+-+||+||||||||+.++.+|++++..+.
T Consensus 3 ~~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 3 DDESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred CcccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 3455666 7889999999999999999875322 2234568899999999999999999999999887
Q ss_pred EEccccc-c------cccccch---------HHHHHHH-HHHHHhhh-------hcCCCeEEEEccccccCCCCCCCchh
Q 007255 83 VISPHSV-H------KAHVGES---------EKALREA-FSQASSHA-------LSGKPSVVFIDEIDALCPRRDHRREQ 138 (611)
Q Consensus 83 ~v~~~~~-~------~~~~~~~---------~~~l~~~-f~~~~~~~-------~~~~~~il~IDeid~l~~~~~~~~~~ 138 (611)
+...... . ..+.+.. ...+..+ +....... ...++.||+|||+=.++...
T Consensus 75 Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~------ 148 (519)
T PF03215_consen 75 EWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD------ 148 (519)
T ss_pred EecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh------
Confidence 7532211 0 0111100 0112221 11111100 11356799999986554321
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCcEEEEEe-ec------Cc--------ccccHHhhccCCcceEEEccCCCHHHHHHHH
Q 007255 139 DVRIASQLFTLMDSNKPSKTSVPHVVVVAS-TN------RV--------DAIDPALRRSGRFDAEVEVTVPTAEERFEIL 203 (611)
Q Consensus 139 ~~~~~~~ll~~l~~~~~~~~~~~~v~ii~t-tn------~~--------~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il 203 (611)
...+...|..++..... . +++||.| +. .. .-+++.+....++ ..|.|.+-+..-+.+.|
T Consensus 149 ~~~f~~~L~~~l~~~~~----~-PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL 222 (519)
T PF03215_consen 149 TSRFREALRQYLRSSRC----L-PLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKAL 222 (519)
T ss_pred HHHHHHHHHHHHHcCCC----C-CEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHH
Confidence 13455555555553221 1 3555555 21 11 1356777764454 48999999998887777
Q ss_pred HHhhcCC--------CCCCcc-cHHHHHHhccCCccccHHHHHHHHHHHHh
Q 007255 204 KLYTKKV--------PLDANV-DLEAIATSCNGYVGADLEALCREATMSAV 245 (611)
Q Consensus 204 ~~~~~~~--------~~~~~~-~~~~la~~~~g~~~~dl~~l~~~a~~~a~ 245 (611)
+..+... ...... .++.++..+. +||+..+......+.
T Consensus 223 ~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 223 KRILKKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 7665432 111112 2666666544 577777665554444
No 393
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.76 E-value=4.7e-08 Score=95.14 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=50.5
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccch---HHHHHHHHHHHHhcCCcEEEEcccccc
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGES---EALLRNTFQRARLAAPSIIFFDEADVV 395 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~a~~~~p~il~iDeid~l 395 (611)
.+++|+||||||||+|+.++|+++ +..++.++.+++........ ......+++.. ...++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 479999999999999999999988 77888888888876433211 11222344333 35679999999765
No 394
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.75 E-value=3e-08 Score=109.11 Aligned_cols=204 Identities=19% Similarity=0.213 Sum_probs=121.6
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhcc
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYS 362 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~ 362 (611)
..+++.++|.....+.+.+.+.... .....+||+|++||||+++|+++.... +.+|+.+++..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 3568899999888887777766421 234569999999999999999999875 57999999987633
Q ss_pred ccccchHHHHHHHHHH---------------HHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--
Q 007255 363 MYVGESEALLRNTFQR---------------ARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-- 425 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~---------------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-- 425 (611)
.. .-..+|.. .......+||||||+.+. ...+..|+..++.-.
T Consensus 261 ~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~--------------~~~Q~~Ll~~l~~~~~~ 320 (534)
T TIGR01817 261 TL------LESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEIS--------------PAFQAKLLRVLQEGEFE 320 (534)
T ss_pred HH------HHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCC--------------HHHHHHHHHHHhcCcEE
Confidence 11 00111110 111234599999999882 456677777775321
Q ss_pred C-------CCCeEEEEecCCCc-------ccchhccCCCCcc-ceeecCCCC--HHHHHHHHHHHhcCC----CC---CC
Q 007255 426 Q-------AKGILVLAATNRPH-------AIDAALMRPGRFD-LVLYVPPPD--LEARHEILRVHTRNM----KV---GD 481 (611)
Q Consensus 426 ~-------~~~~~vI~~tn~~~-------~ld~al~r~gRf~-~~i~~~~p~--~~~r~~il~~~~~~~----~~---~~ 481 (611)
+ .-++.+|++|+..- .+.+.|.. |+. ..|.+|+.. .++...|++.++..+ .. .+
T Consensus 321 ~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s 398 (534)
T TIGR01817 321 RVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTIT 398 (534)
T ss_pred ECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCC
Confidence 1 11477888887542 12233333 443 345565443 234445555444322 11 12
Q ss_pred cccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHH
Q 007255 482 DVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQ 527 (611)
Q Consensus 482 ~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~ 527 (611)
+..+..|.....--+-++++++++.+...+- ...|+.+|+.
T Consensus 399 ~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~~-----~~~I~~~~l~ 439 (534)
T TIGR01817 399 PSAIRVLMSCKWPGNVRELENCLERTATLSR-----SGTITRSDFS 439 (534)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHhCC-----CCcccHHHCc
Confidence 2335556665543367888888887765432 2345555543
No 395
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=1.9e-07 Score=93.71 Aligned_cols=127 Identities=14% Similarity=0.122 Sum_probs=91.8
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHhCCc-------------EEeecchhhccccccchHHHHHHHHHHHHh-----cC
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEAS-------------FFSLSGAELYSMYVGESEALLRNTFQRARL-----AA 383 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~-------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~-----~~ 383 (611)
..++.+||+|+.|+||+.+|+.+|+.+.|. +..++.. +.. -.-..++.+.+.... ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCC
Confidence 456789999999999999999999988442 1111100 000 112344455444421 24
Q ss_pred CcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCH
Q 007255 384 PSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDL 463 (611)
Q Consensus 384 p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~ 463 (611)
..|++||++|.+ +....+.||+.|+ ++++.+++|.+|+.++.+-+.+.+ |+. ++.|++|+.
T Consensus 91 ~KvvII~~~e~m--------------~~~a~NaLLK~LE--EPp~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKT--------------SNSLLNALLKTIE--EPPKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQ 151 (299)
T ss_pred ceEEEEeccccc--------------CHHHHHHHHHHhh--CCCCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCH
Confidence 459999999876 3557799999999 688888999888899999888887 887 899999998
Q ss_pred HHHHHHHHH
Q 007255 464 EARHEILRV 472 (611)
Q Consensus 464 ~~r~~il~~ 472 (611)
++..+.+..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 888877663
No 396
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.74 E-value=6e-08 Score=109.23 Aligned_cols=198 Identities=16% Similarity=0.212 Sum_probs=114.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKA 92 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~ 92 (611)
..|++++|.....+.+.+.+... .....+|||+|++||||+++|+++.+.. +.+|+.++|..+...
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 35778888888777776665432 1245689999999999999999998875 468999999876421
Q ss_pred cccchHHHHHHHHHHH---Hh-----hhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC-----CC
Q 007255 93 HVGESEKALREAFSQA---SS-----HALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK-----TS 159 (611)
Q Consensus 93 ~~~~~~~~l~~~f~~~---~~-----~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-----~~ 159 (611)
.. -..+|... .. ......++.|||||++.|.. ..+..|+..++...... ..
T Consensus 391 ~~------~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~----------~~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 391 AL------AEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP----------ELQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HH------HHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH----------HHHHHHHHHHhcCcEEeCCCCceE
Confidence 10 11122111 00 01123467999999998865 67888888887643211 11
Q ss_pred CCcEEEEEeecCc-------ccccHHhhccCCcceEEEccCCCHHHH----HHHHHHhhcCC----CCCCccc---HHHH
Q 007255 160 VPHVVVVASTNRV-------DAIDPALRRSGRFDAEVEVTVPTAEER----FEILKLYTKKV----PLDANVD---LEAI 221 (611)
Q Consensus 160 ~~~v~ii~ttn~~-------~~l~~~l~~~~Rf~~~i~~~~p~~~~r----~~Il~~~~~~~----~~~~~~~---~~~l 221 (611)
+.++.+|++|+.. ..+.+.+.- |+. .+.+..|...+| ..++++++... ....... +..+
T Consensus 455 ~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 531 (638)
T PRK11388 455 PVDVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 (638)
T ss_pred EeeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 1257888888863 123333332 442 345555555544 34455554322 1111111 2333
Q ss_pred HHhccCCccccHHHHHHHHHHH
Q 007255 222 ATSCNGYVGADLEALCREATMS 243 (611)
Q Consensus 222 a~~~~g~~~~dl~~l~~~a~~~ 243 (611)
....=--+-++|+++++.++..
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHh
Confidence 2221112346788888776653
No 397
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.74 E-value=5e-08 Score=94.92 Aligned_cols=170 Identities=18% Similarity=0.225 Sum_probs=116.3
Q ss_pred ccccccc------ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--
Q 007255 9 SEHNEKW------KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-- 80 (611)
Q Consensus 9 ~~~~~~~------~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~-- 80 (611)
..++..| ..+.+++++++....+++.... ..-.|.|+|||||||||+.+.+.|+.+-.+
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~ 91 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHP 91 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCC
Confidence 4556666 6788999999999999887432 122399999999999999999999998653
Q ss_pred ----EEEEcccccccccccchHHHHHHHHHHHHhhhh-c--CCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcC
Q 007255 81 ----LTVISPHSVHKAHVGESEKALREAFSQASSHAL-S--GKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSN 153 (611)
Q Consensus 81 ----~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~-~--~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~ 153 (611)
+...++++-.. . ...+.-...|....+... + .....+++||+|.+.. ..+++|.+.++.+
T Consensus 92 ~~~m~lelnaSd~rg--i-d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~----------~AQnALRRviek~ 158 (360)
T KOG0990|consen 92 TTSMLLELNASDDRG--I-DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR----------DAQNALRRVIEKY 158 (360)
T ss_pred chhHHHHhhccCccC--C-cchHHHHHHHHhhccceeccccCceeEEEecchhHhhH----------HHHHHHHHHHHHh
Confidence 11223322111 1 112222233444332111 1 1356899999998854 5678888777664
Q ss_pred CCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC
Q 007255 154 KPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD 213 (611)
Q Consensus 154 ~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~ 213 (611)
.. ++.|...+|++..+.|++++ ||. .+.|.+.+..+....+.+.++.-...
T Consensus 159 t~------n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~ 209 (360)
T KOG0990|consen 159 TA------NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKE 209 (360)
T ss_pred cc------ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhh
Confidence 43 35566778999999999998 886 78888889888888888887654433
No 398
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.74 E-value=4e-08 Score=100.83 Aligned_cols=198 Identities=21% Similarity=0.205 Sum_probs=120.4
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----CCcEEeecchhhc
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----EASFFSLSGAELY 361 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----~~~~~~~~~~~~~ 361 (611)
...+++++|....-+.+.+.+.. -.+...++|++|++||||+.+|+++.... +.||+.+||+.+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 44678899988777777776653 11334579999999999999999997443 6799999998876
Q ss_pred cc-------------cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC---
Q 007255 362 SM-------------YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--- 425 (611)
Q Consensus 362 ~~-------------~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--- 425 (611)
.. |.| ....-..+|+.|. ...||+|||+.+- ......|+..||..+
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~---GGtLfLDEI~~LP--------------~~~Q~kLl~~le~g~~~r 204 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQAN---GGTLFLDEIHRLP--------------PEGQEKLLRVLEEGEYRR 204 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecC---CCEEehhhhhhCC--------------HhHHHHHHHHHHcCceEe
Confidence 53 122 1112223343332 3499999999883 446677888887521
Q ss_pred ------CCCCeEEEEecCC--Ccccch--hccCCCCccceeecCCCCH--HHHHHHHHHHh----cCCCCC--Ccc--cH
Q 007255 426 ------QAKGILVLAATNR--PHAIDA--ALMRPGRFDLVLYVPPPDL--EARHEILRVHT----RNMKVG--DDV--DL 485 (611)
Q Consensus 426 ------~~~~~~vI~~tn~--~~~ld~--al~r~gRf~~~i~~~~p~~--~~r~~il~~~~----~~~~~~--~~~--~~ 485 (611)
....+.+|+|||. ++.+-. .+.| -|+...|.+|+... +++..+++.++ ++.... ... .+
T Consensus 205 vG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~ 283 (403)
T COG1221 205 VGGSQPRPVDVRLICATTEDLEEAVLAGADLTR-RLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEAL 283 (403)
T ss_pred cCCCCCcCCCceeeeccccCHHHHHHhhcchhh-hhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 2346888888874 223333 4443 14445555554333 23333444333 333332 222 13
Q ss_pred HHHHHh-CCCCCHHHHHHHHHHHHHHHHHh
Q 007255 486 RSIAEE-TELFTGAELEGLCREAGIVALRE 514 (611)
Q Consensus 486 ~~la~~-~~g~s~~~i~~~~~~a~~~a~~~ 514 (611)
..|-.. ..| +-++++++++.+...+...
T Consensus 284 ~~L~~y~~pG-NirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 284 RALLAYDWPG-NIRELKNLVERAVAQASGE 312 (403)
T ss_pred HHHHhCCCCC-cHHHHHHHHHHHHHHhccc
Confidence 333332 345 6789999999888877544
No 399
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.72 E-value=3.4e-07 Score=88.05 Aligned_cols=88 Identities=22% Similarity=0.250 Sum_probs=62.9
Q ss_pred CcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCc-ccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 007255 439 PHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDD-VDLRSIAEETELFTGAELEGLCREAGIVALREDIS 517 (611)
Q Consensus 439 ~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~ 517 (611)
|+-++-.|+. |.- +|...+++.++..+||++.+....+.-+ ..++.|......-|-+...+++..|...+.++.
T Consensus 339 phGiP~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk-- 413 (454)
T KOG2680|consen 339 PHGIPIDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK-- 413 (454)
T ss_pred CCCCcHHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc--
Confidence 5567778887 765 7777789999999999988876655533 345666666666666777777777777777775
Q ss_pred cccccHHHHHHHHh
Q 007255 518 ATAVRNRHFQTVKD 531 (611)
Q Consensus 518 ~~~i~~~~~~~~l~ 531 (611)
.+.+..+|+..+.+
T Consensus 414 ~~~v~~~di~r~y~ 427 (454)
T KOG2680|consen 414 GKVVEVDDIERVYR 427 (454)
T ss_pred CceeehhHHHHHHH
Confidence 45566677776654
No 400
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.71 E-value=2.4e-07 Score=101.18 Aligned_cols=194 Identities=21% Similarity=0.211 Sum_probs=116.0
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhcccc
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMY 364 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~ 364 (611)
...+++|.....+.+.+.+... .....++||+|++||||+++|+++.... +.+|+.+++..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 3567888888777777776641 1234579999999999999999999875 5799999988764310
Q ss_pred -----ccchH----HH---HHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-------
Q 007255 365 -----VGESE----AL---LRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE------- 425 (611)
Q Consensus 365 -----~g~~~----~~---~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~------- 425 (611)
.|... .. -...|.. .....||||||+.+. ...+..|+..++.-.
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L~--------------~~~Q~~Ll~~l~~~~~~~~g~~ 316 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGELP--------------LALQAKLLRVLQYGEIQRVGSD 316 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhh---cCCCEEEecChhhCC--------------HHHHHHHHHHHhcCCEeeCCCC
Confidence 01000 00 0011222 335589999999882 456677777775321
Q ss_pred --CCCCeEEEEecCCCc-------ccchhccCCCCccceeecCCCCHHHHH----HHHHHHhcC----CCC----CCccc
Q 007255 426 --QAKGILVLAATNRPH-------AIDAALMRPGRFDLVLYVPPPDLEARH----EILRVHTRN----MKV----GDDVD 484 (611)
Q Consensus 426 --~~~~~~vI~~tn~~~-------~ld~al~r~gRf~~~i~~~~p~~~~r~----~il~~~~~~----~~~----~~~~~ 484 (611)
..-++.+|++|+..- .+.+.|.. |+. .+.+..|...+|. .+++.++++ +.. .++..
T Consensus 317 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a 393 (509)
T PRK05022 317 RSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAA 393 (509)
T ss_pred cceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 112578888887642 23333433 443 3344455555543 333333322 211 12233
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007255 485 LRSIAEETELFTGAELEGLCREAGIVAL 512 (611)
Q Consensus 485 ~~~la~~~~g~s~~~i~~~~~~a~~~a~ 512 (611)
+..|.....=-+-+++++++..+...+.
T Consensus 394 ~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 394 QAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 5555555543377899999998877654
No 401
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.71 E-value=5.3e-07 Score=96.35 Aligned_cols=196 Identities=18% Similarity=0.276 Sum_probs=127.1
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh----------CCcEEeecchhhccc----------cccchHH------HHHHHHHH
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA----------EASFFSLSGAELYSM----------YVGESEA------LLRNTFQR 378 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~~~~~~~~~~----------~~g~~~~------~~~~~~~~ 378 (611)
..+.+.|-||||||+.++.+-.++ ...++.+++-.+.+. +.|+... .+..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 357889999999999999999866 356788887655442 2332211 11112221
Q ss_pred H-HhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCC-CCCCCeEEEEecCCCcccchhcc-C-CCCcc-
Q 007255 379 A-RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL-EQAKGILVLAATNRPHAIDAALM-R-PGRFD- 453 (611)
Q Consensus 379 a-~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~~vI~~tn~~~~ld~al~-r-~gRf~- 453 (611)
. ....++||+|||.|.|+... . .-|.+.+|-. .+..+++||+..|.-+....-+. | .+|++
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~-----------Q---dVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~ 568 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRS-----------Q---DVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGL 568 (767)
T ss_pred CCCCCCCEEEEeccHHHHhccc-----------H---HHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccc
Confidence 1 12346799999999997442 2 3344444432 35668889988887654333222 1 13666
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCC--HHHHHHHHHHHHHHHHHhhc-----ccccccHHHH
Q 007255 454 LVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFT--GAELEGLCREAGIVALREDI-----SATAVRNRHF 526 (611)
Q Consensus 454 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s--~~~i~~~~~~a~~~a~~~~~-----~~~~i~~~~~ 526 (611)
..|.|.+++..+..+|+...+.+........++-+|+.-...| .+....+|+.|...|-.+.. ....+...|+
T Consensus 569 tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v 648 (767)
T KOG1514|consen 569 TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHV 648 (767)
T ss_pred eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHH
Confidence 6889999999999999998888875544444455554433333 45667789999888877765 1235788888
Q ss_pred HHHHhhcC
Q 007255 527 QTVKDSLK 534 (611)
Q Consensus 527 ~~~l~~~~ 534 (611)
.+|+..+-
T Consensus 649 ~~Ai~em~ 656 (767)
T KOG1514|consen 649 MEAINEML 656 (767)
T ss_pred HHHHHHHh
Confidence 88887653
No 402
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.70 E-value=1.6e-07 Score=105.72 Aligned_cols=206 Identities=16% Similarity=0.177 Sum_probs=119.8
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhcc
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYS 362 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~ 362 (611)
..+|++++|.....+.+.+.+.... .....+||+|++||||+++|+++.+.. +.+|+.++++.+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 3468888888776666665554311 223469999999999999999999876 47999999876632
Q ss_pred ccccchHHHHHHHHHH------------HHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--CC-
Q 007255 363 MYVGESEALLRNTFQR------------ARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--QA- 427 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~------------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~- 427 (611)
. ..-..+|.. ........||||||+.+ ...++..|+..++.-. +.
T Consensus 390 ~------~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l--------------~~~~Q~~Ll~~l~~~~~~~~~ 449 (638)
T PRK11388 390 E------ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL--------------SPELQSALLQVLKTGVITRLD 449 (638)
T ss_pred H------HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC--------------CHHHHHHHHHHHhcCcEEeCC
Confidence 1 001112210 11123569999999987 2456677777775321 11
Q ss_pred ------CCeEEEEecCCCc-------ccchhccCCCCccceeecCCCCHHHHH----HHHHHHhcCC----C--C-CCcc
Q 007255 428 ------KGILVLAATNRPH-------AIDAALMRPGRFDLVLYVPPPDLEARH----EILRVHTRNM----K--V-GDDV 483 (611)
Q Consensus 428 ------~~~~vI~~tn~~~-------~ld~al~r~gRf~~~i~~~~p~~~~r~----~il~~~~~~~----~--~-~~~~ 483 (611)
-++.+|+||+..- .+.+.|.- |+. .+.+..|...+|. .+++.++..+ . + .++.
T Consensus 450 ~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~ 526 (638)
T PRK11388 450 SRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDD 526 (638)
T ss_pred CCceEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHH
Confidence 1477888888642 12222222 333 3445556665553 3344333222 1 1 1333
Q ss_pred cHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 007255 484 DLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 484 ~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
.+..|.....--+-++++++++.+...+ ....|+..|+...+
T Consensus 527 a~~~L~~y~WPGNvreL~~~l~~~~~~~-----~~~~i~~~~lp~~~ 568 (638)
T PRK11388 527 ALARLVSYRWPGNDFELRSVIENLALSS-----DNGRIRLSDLPEHL 568 (638)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHhC-----CCCeecHHHCchhh
Confidence 4556666554336788888888766543 12346666665444
No 403
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.70 E-value=1.2e-07 Score=107.54 Aligned_cols=193 Identities=23% Similarity=0.275 Sum_probs=116.3
Q ss_pred cccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccc
Q 007255 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM 363 (611)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~ 363 (611)
..|++++|.....+.+.+.+.... ....++||+|++|||||++|+++.... +.+|+.+++..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 357789998888887777666311 223579999999999999999998865 578999998765321
Q ss_pred -----c--------ccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-----
Q 007255 364 -----Y--------VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE----- 425 (611)
Q Consensus 364 -----~--------~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----- 425 (611)
. .|...... ..+. .....+||||||+.+ ...+...|+..++...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le---~a~~GtL~Ldei~~L--------------~~~~Q~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFE---LADKSSLFLDEVGDM--------------PLELQPKLLRVLQEQEFERLG 503 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHH---hcCCCeEEEechhhC--------------CHHHHHHHHHHHHhCCEEeCC
Confidence 1 11111111 1222 234569999999987 2456677777775321
Q ss_pred ----CCCCeEEEEecCCCc--c-----cchhccCCCCccceeecCCCCHHHHHH----HHHHHhcC----CCC----CCc
Q 007255 426 ----QAKGILVLAATNRPH--A-----IDAALMRPGRFDLVLYVPPPDLEARHE----ILRVHTRN----MKV----GDD 482 (611)
Q Consensus 426 ----~~~~~~vI~~tn~~~--~-----ld~al~r~gRf~~~i~~~~p~~~~r~~----il~~~~~~----~~~----~~~ 482 (611)
...++.+|++|+.+- . +...+.. |+. .+.+..|...+|.. +++.++.+ +.. .++
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~ 580 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPA 580 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 123578888887642 1 2222322 443 34445566655543 44433322 221 123
Q ss_pred ccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007255 483 VDLRSIAEETELFTGAELEGLCREAGIVA 511 (611)
Q Consensus 483 ~~~~~la~~~~g~s~~~i~~~~~~a~~~a 511 (611)
..+..|.....=-+-++++++++.+...+
T Consensus 581 ~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 581 ETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 34556655554336789999998887654
No 404
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.70 E-value=1.8e-07 Score=94.90 Aligned_cols=61 Identities=16% Similarity=0.304 Sum_probs=48.1
Q ss_pred cc-cccchhHHHHHHHHHhhccCCChhHHhhcCC-CCCCCcceeCCCCCChHHHHHHHHHHhCC-------cEEeecc
Q 007255 289 WE-DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGI-SPVRGALLHGPPGCSKTTLAKAAAHAAEA-------SFFSLSG 357 (611)
Q Consensus 289 ~~-~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~-~~~~~~Ll~Gp~G~GKT~la~ala~~~~~-------~~~~~~~ 357 (611)
|+ ++.|+++++.++.+++..... |. ...+.++|+||||||||++|+++|+.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 55 899999999988887764221 22 23466899999999999999999999966 7888766
No 405
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.69 E-value=4.8e-08 Score=101.97 Aligned_cols=207 Identities=20% Similarity=0.238 Sum_probs=126.0
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELY 361 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~ 361 (611)
.+.+|++|+|....-..+.+.+.. .-.....+|+.|.+||||..+|+++-+.. +.||+.+||+.+-
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 356899999988777766666553 22445679999999999999999999877 7899999996553
Q ss_pred cc-------------cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCC----
Q 007255 362 SM-------------YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL---- 424 (611)
Q Consensus 362 ~~-------------~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---- 424 (611)
.. |.|...+.-...|+.|.. .-||+|||..+ ...++..||..|..-
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem--------------pl~LQaKLLRVLQEkei~r 371 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM--------------PLPLQAKLLRVLQEKEIER 371 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC--------------CHHHHHHHHHHHhhceEEe
Confidence 32 233222212235555433 39999999765 356778888777521
Q ss_pred -----CCCCCeEEEEecCCCc--cc-----chhccCCCCccceeecCCCCHHHHHH----HHHHH----hcCCCCC----
Q 007255 425 -----EQAKGILVLAATNRPH--AI-----DAALMRPGRFDLVLYVPPPDLEARHE----ILRVH----TRNMKVG---- 480 (611)
Q Consensus 425 -----~~~~~~~vI~~tn~~~--~l-----d~al~r~gRf~~~i~~~~p~~~~r~~----il~~~----~~~~~~~---- 480 (611)
..+-.+.+|+|||+.= .+ -..|.= |+. ++.+..|...+|.+ +...+ .++++..
T Consensus 372 vG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~l 448 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGL 448 (560)
T ss_pred cCCCCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccC
Confidence 1122589999999732 12 112221 444 55555666655542 22222 2333322
Q ss_pred CcccHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHH
Q 007255 481 DDVDLRSIAEET-ELFTGAELEGLCREAGIVALREDISATAVRNRHFQ 527 (611)
Q Consensus 481 ~~~~~~~la~~~-~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~ 527 (611)
++..+..|.+.. .| +-+++++++..+....-.. ..|+..|+.
T Consensus 449 s~~a~~~L~~y~WPG-NVRELeNviER~v~~~~~~----~~I~~~~lp 491 (560)
T COG3829 449 SPDALALLLRYDWPG-NVRELENVIERAVNLVESD----GLIDADDLP 491 (560)
T ss_pred CHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccCCc----ceeehhhcc
Confidence 223344444443 35 6788999888877633322 226666655
No 406
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.68 E-value=5.8e-08 Score=103.69 Aligned_cols=153 Identities=22% Similarity=0.257 Sum_probs=95.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEcc-----
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA----HLTVISP----- 86 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~----~~~~v~~----- 86 (611)
.++.++.|+..+++.+.-. .....+++|+||||+|||++++.++..+.. ..+.+..
T Consensus 188 ~d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 4778888988777665322 224579999999999999999999876531 1222111
Q ss_pred c------cc-----ccccccchHHHHHHHHHH----HHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHh
Q 007255 87 H------SV-----HKAHVGESEKALREAFSQ----ASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (611)
Q Consensus 87 ~------~~-----~~~~~~~~~~~l~~~f~~----~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 151 (611)
. .+ ...+...+...+ +-. -.........++||+||++.+.+ ..+..|++.|+
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l---~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~----------~~~~~L~~~LE 319 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAM---VGGGAIPGPGEISLAHNGVLFLDELPEFER----------RTLDALREPIE 319 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHH---hCCCceehhhHhhhccCCEEecCCchhCCH----------HHHHHHHHHHH
Confidence 0 00 000111111111 100 00001123467999999987643 67888888887
Q ss_pred cCCC-------CCCCCCcEEEEEeecCcc---------------------cccHHhhccCCcceEEEccCCCHHH
Q 007255 152 SNKP-------SKTSVPHVVVVASTNRVD---------------------AIDPALRRSGRFDAEVEVTVPTAEE 198 (611)
Q Consensus 152 ~~~~-------~~~~~~~v~ii~ttn~~~---------------------~l~~~l~~~~Rf~~~i~~~~p~~~~ 198 (611)
.... ....+.++.+|+++|+.. .++.+++. ||+..+.++.|+.++
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~ 392 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGI 392 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHH
Confidence 6432 122345789999999842 47778888 999999999998773
No 407
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.68 E-value=1e-07 Score=103.07 Aligned_cols=193 Identities=17% Similarity=0.189 Sum_probs=112.2
Q ss_pred cccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHH-----------hCCcEEee
Q 007255 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHA-----------AEASFFSL 355 (611)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~-----------~~~~~~~~ 355 (611)
.+|++++|.....+.+.+.+... .....++||+|++||||+++|+++... .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46888999988777777766531 123457999999999999999999887 36799999
Q ss_pred cchhhcccc-----ccchH----H----HHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhc
Q 007255 356 SGAELYSMY-----VGESE----A----LLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (611)
Q Consensus 356 ~~~~~~~~~-----~g~~~----~----~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 422 (611)
+++.+.... .|..+ . .-..+|..+ +...||||||+.+ ...++..|+..|+
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~L--------------p~~~Q~kLl~~L~ 347 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEM--------------PLPLQTRLLRVLE 347 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhC--------------CHHHHHHHHhhhh
Confidence 998764311 01000 0 001123332 3459999999987 2456777887775
Q ss_pred CCC---------CCCCeEEEEecCCCc--cc-----chhccCCCCccceeecCCCCHHHHH----HHHHHHhcC----CC
Q 007255 423 GLE---------QAKGILVLAATNRPH--AI-----DAALMRPGRFDLVLYVPPPDLEARH----EILRVHTRN----MK 478 (611)
Q Consensus 423 ~~~---------~~~~~~vI~~tn~~~--~l-----d~al~r~gRf~~~i~~~~p~~~~r~----~il~~~~~~----~~ 478 (611)
.-. -.-++.+|++||..- .. .+.|.. |+. .+.+..|...+|. .+++.++++ ..
T Consensus 348 e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~ 424 (538)
T PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLS-ILRLQLPPLRERVADILPLAESFLKQSLAALS 424 (538)
T ss_pred cCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcC
Confidence 321 012457888887642 11 122222 333 3445556555554 344444433 22
Q ss_pred CCCccc-H-------HHHHHhCCCCCHHHHHHHHHHHHHH
Q 007255 479 VGDDVD-L-------RSIAEETELFTGAELEGLCREAGIV 510 (611)
Q Consensus 479 ~~~~~~-~-------~~la~~~~g~s~~~i~~~~~~a~~~ 510 (611)
..-..+ + ..|.....=-+-+++++++..+...
T Consensus 425 ~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 425 APFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred CCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 211111 1 2233332222668888888887664
No 408
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.67 E-value=1.5e-07 Score=105.18 Aligned_cols=173 Identities=18% Similarity=0.148 Sum_probs=100.0
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHH--------hcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------cEEE
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQ--------KLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-------HLTV 83 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~--------~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~-------~~~~ 83 (611)
-.|.|.+.+|+.|.-.+........... ...++...||||+|+||||||.+++++++.... ++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 3577888888777444322110000000 012345569999999999999999999985432 2222
Q ss_pred EcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCC-------C
Q 007255 84 ISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP-------S 156 (611)
Q Consensus 84 v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~ 156 (611)
+++..........+. -+..-.........++++|||+|.+.+ ..+..|+..|+...- .
T Consensus 530 vgLTa~~~~~d~~tG-----~~~le~GaLvlAdgGtL~IDEidkms~----------~~Q~aLlEaMEqqtIsI~KaGi~ 594 (915)
T PTZ00111 530 VGLTASIKFNESDNG-----RAMIQPGAVVLANGGVCCIDELDKCHN----------ESRLSLYEVMEQQTVTIAKAGIV 594 (915)
T ss_pred ccccchhhhcccccC-----cccccCCcEEEcCCCeEEecchhhCCH----------HHHHHHHHHHhCCEEEEecCCcc
Confidence 222211100000000 000000011123467999999998854 567788888876431 1
Q ss_pred CCCCCcEEEEEeecCcc-------------cccHHhhccCCcceE-EEccCCCHHHHHHHHHHhhc
Q 007255 157 KTSVPHVVVVASTNRVD-------------AIDPALRRSGRFDAE-VEVTVPTAEERFEILKLYTK 208 (611)
Q Consensus 157 ~~~~~~v~ii~ttn~~~-------------~l~~~l~~~~Rf~~~-i~~~~p~~~~r~~Il~~~~~ 208 (611)
.....++.|||++|+.. .+++++++ ||+.. +.++.|+.+.=..|..+.+.
T Consensus 595 ~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 595 ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHHH
Confidence 12335689999999952 56799999 99855 46677777766666666554
No 409
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=7.7e-07 Score=90.99 Aligned_cols=188 Identities=22% Similarity=0.267 Sum_probs=120.0
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEcccccccc-
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG-----AHLTVISPHSVHKA- 92 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~-----~~~~~v~~~~~~~~- 92 (611)
..+.|.+.....+.+++..++. ...+..+.++|-||||||.....+...+. ...++++|.++...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle---------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE---------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh---------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 5678999999999999876544 24568999999999999999997766553 24467777653211
Q ss_pred --------------cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCC
Q 007255 93 --------------HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKT 158 (611)
Q Consensus 93 --------------~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 158 (611)
..+.+.......|...... ...+.|+++||+|.|..... .++..++.+= ..
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q--~k~~~llVlDEmD~L~tr~~-------~vLy~lFewp------~l 285 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQ--SKFMLLLVLDEMDHLITRSQ-------TVLYTLFEWP------KL 285 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhc--ccceEEEEechhhHHhhccc-------ceeeeehhcc------cC
Confidence 0111122223333333322 12477999999999985331 2223332221 11
Q ss_pred CCCcEEEEEeecCccccc---HHhhc-cCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc--ccHHHHHHhccCCcc
Q 007255 159 SVPHVVVVASTNRVDAID---PALRR-SGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN--VDLEAIATSCNGYVG 230 (611)
Q Consensus 159 ~~~~v~ii~ttn~~~~l~---~~l~~-~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~--~~~~~la~~~~g~~~ 230 (611)
+..++++|+..|..+.-| |.|.. .+--...+.|++|+.++..+|++..+........ .-++..|....|.+|
T Consensus 286 p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG 363 (529)
T KOG2227|consen 286 PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG 363 (529)
T ss_pred CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch
Confidence 233688999999866333 44433 1122367899999999999999999877654433 236667777777766
No 410
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.67 E-value=4e-08 Score=100.01 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=48.7
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccc---hHHHHHHHHHHHHhcCCcEEEEcccccc
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGE---SEALLRNTFQRARLAAPSIIFFDEADVV 395 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~a~~~~p~il~iDeid~l 395 (611)
.+++|+||+|||||+||.|+|+++ +..++.++..++....... ........+.. ....++|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCC
Confidence 689999999999999999999987 7788888888876643211 00111111222 234569999999765
No 411
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.65 E-value=1.4e-07 Score=102.22 Aligned_cols=193 Identities=17% Similarity=0.197 Sum_probs=110.7
Q ss_pred cccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccc
Q 007255 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM 363 (611)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~ 363 (611)
.+|++++|.....+.+.+.+... .....++||+|++||||+++|+++.... +.+|+.++++.+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 56889999988777777766531 1233579999999999999999998765 679999999876431
Q ss_pred c-----cc--------chHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-----
Q 007255 364 Y-----VG--------ESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE----- 425 (611)
Q Consensus 364 ~-----~g--------~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----- 425 (611)
. .| .....-..+|..+ +...||||||+.+ ...++..|+..|+.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~L--------------p~~~Q~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEM--------------PLPLQTRLLRVLEEREVVRVG 340 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhC--------------CHHHHHHHHHHHhcCcEEecC
Confidence 1 11 0000011223322 3459999999987 2456777777775321
Q ss_pred ----CCCCeEEEEecCCCc--c-----cchhccCCCCccceeecCCCCHHHH----HHHHHHHhcCC----CCC-CcccH
Q 007255 426 ----QAKGILVLAATNRPH--A-----IDAALMRPGRFDLVLYVPPPDLEAR----HEILRVHTRNM----KVG-DDVDL 485 (611)
Q Consensus 426 ----~~~~~~vI~~tn~~~--~-----ld~al~r~gRf~~~i~~~~p~~~~r----~~il~~~~~~~----~~~-~~~~~ 485 (611)
..-++.+|++|+.+- . +.+.|.. |+. .+.+..|...+| -.+++.++..+ .+. ++..+
T Consensus 341 ~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~ 417 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAA 417 (526)
T ss_pred CCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 011357888887642 1 2223332 443 233444444444 34444444332 111 11112
Q ss_pred HH-------HHHhCCCCCHHHHHHHHHHHHHH
Q 007255 486 RS-------IAEETELFTGAELEGLCREAGIV 510 (611)
Q Consensus 486 ~~-------la~~~~g~s~~~i~~~~~~a~~~ 510 (611)
.. |.....=-+-+++++++..+...
T Consensus 418 ~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 418 QVLAGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 22 33333322567888888776654
No 412
>PRK08181 transposase; Validated
Probab=98.64 E-value=4.4e-08 Score=96.78 Aligned_cols=70 Identities=23% Similarity=0.267 Sum_probs=50.0
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccc-hHHHHHHHHHHHHhcCCcEEEEcccccc
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGE-SEALLRNTFQRARLAAPSIIFFDEADVV 395 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~a~~~~p~il~iDeid~l 395 (611)
..+++|+||||||||+||.++|.++ |..++.++..++....... ........++.. ..+++|+|||++.+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 4579999999999999999999765 7778888888877643221 111222333332 35679999999866
No 413
>PRK08116 hypothetical protein; Validated
Probab=98.64 E-value=1.8e-07 Score=92.92 Aligned_cols=123 Identities=19% Similarity=0.271 Sum_probs=71.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccccccccccc----chHHHHHHHHHHHHhhhhcCCCeEEEEccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVG----ESEKALREAFSQASSHALSGKPSVVFIDEI 125 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~----~~~~~l~~~f~~~~~~~~~~~~~il~IDei 125 (611)
+.+++|+|++|||||+|+.++++++ +.+++.++..++...... ........+++... ...+|+|||+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~------~~dlLviDDl 187 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV------NADLLILDDL 187 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc------CCCEEEEecc
Confidence 4679999999999999999999986 667777777665432211 00011112222221 2459999999
Q ss_pred cccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCc-cc----ccHHhhccCCc---ceEEEccCCCH
Q 007255 126 DALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRV-DA----IDPALRRSGRF---DAEVEVTVPTA 196 (611)
Q Consensus 126 d~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~-~~----l~~~l~~~~Rf---~~~i~~~~p~~ 196 (611)
..... ....+..|+++++...... ..+|.|||.+ .. +++++.+ |+ ...+.++-++.
T Consensus 188 g~e~~--------t~~~~~~l~~iin~r~~~~-----~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 188 GAERD--------TEWAREKVYNIIDSRYRKG-----LPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred cCCCC--------CHHHHHHHHHHHHHHHHCC-----CCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 54211 1133456667776532221 2356666663 33 4566766 64 33566666654
No 414
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=4.3e-07 Score=90.00 Aligned_cols=125 Identities=15% Similarity=0.217 Sum_probs=89.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcc--------cccc---ccccc--chHHHHHHHHHHHHhhhhcCCC
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISP--------HSVH---KAHVG--ESEKALREAFSQASSHALSGKP 117 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~--------~~~~---~~~~~--~~~~~l~~~f~~~~~~~~~~~~ 117 (611)
+.+..+||+||+|+||+.+|.++|+.+.+.-..-+| .++. ....+ -....++.+.+.....+..+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 356789999999999999999999988542100001 0110 00000 1344566666666655555666
Q ss_pred eEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCC
Q 007255 118 SVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVP 194 (611)
Q Consensus 118 ~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p 194 (611)
-|++||++|.|.. ...+.|++.+++ +++++++|..|+.++.+.|.++| |+. .+.|+++
T Consensus 97 kv~ii~~ad~mt~----------~AaNaLLK~LEE------Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMTL----------DAISAFLKVLED------PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred eEEEEechhhcCH----------HHHHHHHHHhhc------CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 7999999999854 678999999997 45578889999999999999999 884 7788765
No 415
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.63 E-value=3e-07 Score=100.38 Aligned_cols=196 Identities=16% Similarity=0.147 Sum_probs=111.7
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELY 361 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~ 361 (611)
...+|++++|....-+.+.+.+... . .....+||+|++||||+++|+++.... +.+|+.++++.+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~-------A----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL-------A----MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH-------h----CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 3457889999887666665554421 0 123459999999999999999987665 4789999998764
Q ss_pred ccc-----ccchH-------HHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCC--CC-
Q 007255 362 SMY-----VGESE-------ALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL--EQ- 426 (611)
Q Consensus 362 ~~~-----~g~~~-------~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~- 426 (611)
... .|... ..-..+|.. .....||||||+.+. ..+...|+..+..- .+
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~---a~~GtL~LdeI~~L~--------------~~~Q~~Ll~~l~~~~~~~~ 330 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQ---ANGGSVLLDEIGEMS--------------PRMQAKLLRFLNDGTFRRV 330 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhh---cCCCEEEEeChhhCC--------------HHHHHHHHHHHhcCCcccC
Confidence 310 01000 000112332 234599999999872 45667777777531 11
Q ss_pred ------CCCeEEEEecCCCc-c------cchhccCCCCccceeecCCCCHHHHH----HHHHHHh----cCCCC----CC
Q 007255 427 ------AKGILVLAATNRPH-A------IDAALMRPGRFDLVLYVPPPDLEARH----EILRVHT----RNMKV----GD 481 (611)
Q Consensus 427 ------~~~~~vI~~tn~~~-~------ld~al~r~gRf~~~i~~~~p~~~~r~----~il~~~~----~~~~~----~~ 481 (611)
..++.||+||+.+- . +.+.|.. |+. .+.+..|...+|. .+++.++ .+... .+
T Consensus 331 g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls 407 (520)
T PRK10820 331 GEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLA 407 (520)
T ss_pred CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 12467888877642 1 3344444 554 3444455555544 3333332 22221 12
Q ss_pred cccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007255 482 DVDLRSIAEETELFTGAELEGLCREAGIVA 511 (611)
Q Consensus 482 ~~~~~~la~~~~g~s~~~i~~~~~~a~~~a 511 (611)
+..+..|.....--+-+++++++..|...+
T Consensus 408 ~~a~~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 408 ADLNTVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 223455555433226678888887776643
No 416
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.63 E-value=1.8e-06 Score=82.91 Aligned_cols=106 Identities=25% Similarity=0.313 Sum_probs=65.7
Q ss_pred CCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC-------------cccccHHhhcc
Q 007255 116 KPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR-------------VDAIDPALRRS 182 (611)
Q Consensus 116 ~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~-------------~~~l~~~l~~~ 182 (611)
-|+||||||+|.| +.+....|...++.. ..++++++ +|+ |..+++.+..
T Consensus 296 vPGVLFIDEVhML----------DiEcFTyL~kalES~------iaPivifA-sNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHML----------DIECFTYLHKALESP------IAPIVIFA-SNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred cCcceEeeehhhh----------hhHHHHHHHHHhcCC------CCceEEEe-cCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 3789999999876 224455555666542 22344444 443 4577889988
Q ss_pred CCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcc-cHHHHHHhccCCccccHHHHHHHHH
Q 007255 183 GRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVGADLEALCREAT 241 (611)
Q Consensus 183 ~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~~~~la~~~~g~~~~dl~~l~~~a~ 241 (611)
|.. .|..-+++.++..+|++...+...+.-+. .+..++......+-+-..+++.-+.
T Consensus 358 -Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~ 415 (456)
T KOG1942|consen 358 -RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPAS 415 (456)
T ss_pred -hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHH
Confidence 874 77888889999999999888766554332 3555555444434444444444333
No 417
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.62 E-value=7.5e-07 Score=96.01 Aligned_cols=207 Identities=15% Similarity=0.203 Sum_probs=116.7
Q ss_pred cccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEee-cchh
Q 007255 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL-SGAE 359 (611)
Q Consensus 281 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~-~~~~ 359 (611)
.....+.+.+|+.-...-.+.++.++...+. +..+.+-+||+||||||||++++.+|++++..+.+- ++..
T Consensus 10 ~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~ 81 (519)
T PF03215_consen 10 VEKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVS 81 (519)
T ss_pred chhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCC
Confidence 3344556777777766656666666653211 223345678999999999999999999999887753 3333
Q ss_pred hcc------ccccch---H---H---HHHHH-HHHHHh-----------cCCcEEEEcccccccccCCCCCCCCcchhHH
Q 007255 360 LYS------MYVGES---E---A---LLRNT-FQRARL-----------AAPSIIFFDEADVVGAKRGGSSSTSITVGER 412 (611)
Q Consensus 360 ~~~------~~~g~~---~---~---~~~~~-~~~a~~-----------~~p~il~iDeid~l~~~~~~~~~~~~~~~~~ 412 (611)
+.. .|.+.. . . ....+ +...+. ..+.||+|||+-.++.. + ..+
T Consensus 82 ~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~---------~-~~~ 151 (519)
T PF03215_consen 82 FRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR---------D-TSR 151 (519)
T ss_pred ccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch---------h-HHH
Confidence 111 111110 0 0 11111 111111 23569999999866532 1 144
Q ss_pred HHHHHHHHhcCCCCCC-CeEEEEec-C------CCc--------ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcC
Q 007255 413 LLSTLLTEMDGLEQAK-GILVLAAT-N------RPH--------AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRN 476 (611)
Q Consensus 413 ~~~~ll~~l~~~~~~~-~~~vI~~t-n------~~~--------~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~ 476 (611)
+...|...+.. ... .++||.+- . ... .+++.++.-.++. +|.|.+-.....++-|+..+..
T Consensus 152 f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 152 FREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKALKRILKK 228 (519)
T ss_pred HHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHHHHHHHHH
Confidence 55555555542 222 55666551 1 111 3455555433444 7888887777776666644432
Q ss_pred C--------CCCCccc-HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007255 477 M--------KVGDDVD-LRSIAEETELFTGAELEGLCREAGIVAL 512 (611)
Q Consensus 477 ~--------~~~~~~~-~~~la~~~~g~s~~~i~~~~~~a~~~a~ 512 (611)
. ....... ++.+++.+. +||+.++......+.
T Consensus 229 E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 229 EARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 2 1112223 677777655 499999987777776
No 418
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.5e-08 Score=102.69 Aligned_cols=48 Identities=33% Similarity=0.362 Sum_probs=40.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l 77 (611)
..+|.||.|++.+|..+.-+.. -..|+|++||||||||++++.+...+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 4589999999999999977542 24799999999999999999876544
No 419
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.62 E-value=1.2e-07 Score=93.40 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=49.9
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccchHH-HHH-HHHHHHHhcCCcEEEEcccccc
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEA-LLR-NTFQRARLAAPSIIFFDEADVV 395 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~~~-~~~-~~~~~a~~~~p~il~iDeid~l 395 (611)
.+.+++|+||||+|||+||-|+|+++ |..+..+..+++.......... ... .+.+.. ...++|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 45789999999999999999999998 7888899988887753222111 111 111111 34459999999654
No 420
>PRK06526 transposase; Provisional
Probab=98.61 E-value=4.5e-08 Score=96.26 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=47.1
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccc-hHHHHHHHHHHHHhcCCcEEEEcccccc
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGE-SEALLRNTFQRARLAAPSIIFFDEADVV 395 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~a~~~~p~il~iDeid~l 395 (611)
+.+++|+||||||||++|.+++.++ |..+...+..++....... ....+...++. ...+++|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccC
Confidence 4679999999999999999999876 6667667776665533111 01112222222 235679999999876
No 421
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.61 E-value=4.1e-07 Score=100.08 Aligned_cols=54 Identities=26% Similarity=0.407 Sum_probs=45.9
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCC
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA 350 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~ 350 (611)
...|+..|+++.|++++++.|...+.. .++++|+||||||||++|++++..+.+
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 556778999999999999998887663 137999999999999999999988753
No 422
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=98.60 E-value=2.6e-06 Score=102.83 Aligned_cols=328 Identities=20% Similarity=0.238 Sum_probs=174.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC-cEEEEcccccccccccchHH-HHHHHHHHHH---hhhhcCCCeEEEEcccccc
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGA-HLTVISPHSVHKAHVGESEK-ALREAFSQAS---SHALSGKPSVVFIDEIDAL 128 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~-~~~~v~~~~~~~~~~~~~~~-~l~~~f~~~~---~~~~~~~~~il~IDeid~l 128 (611)
+.++++||+|+|||.++......... .++.++.+...+ +...+ .+..-.+... ..+..++..++|+||++.-
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts---~~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~ddinmp 204 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTS---SELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDDINMP 204 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeecc---HHHHHHHHHHHHHHhcccCCCCCCCceeEEEEeccCCc
Confidence 79999999999999999987766543 222222221111 11111 1111111111 1111223459999999743
Q ss_pred CCCCCCCchhhHHHHHHHHHHH---hcCCCCCCCCCcEEEEEeecCcc----cccHHhhccCCcceEEEccCCCHHHHHH
Q 007255 129 CPRRDHRREQDVRIASQLFTLM---DSNKPSKTSVPHVVVVASTNRVD----AIDPALRRSGRFDAEVEVTVPTAEERFE 201 (611)
Q Consensus 129 ~~~~~~~~~~~~~~~~~ll~~l---~~~~~~~~~~~~v~ii~ttn~~~----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~ 201 (611)
.. ...+......+..+++..- +..........++.++++++++. .+++++.| +|. .+.++.|+.+...+
T Consensus 205 ~~-~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r--~f~-~~~~~~~~~~sl~~ 280 (1395)
T KOG3595|consen 205 AL-DKYGDQPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLR--HFL-IVSLNYPSQESLTQ 280 (1395)
T ss_pred hh-hhcCCccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCccCcccHHHHH--Hee-eEeeCCCChhhHHH
Confidence 22 2333444444555544332 22223344456789999999754 67788887 664 78999999999999
Q ss_pred HHHHhhcCCCCCCc----------------------------------ccHHHHHHhccCCc------cccHHHHHHHHH
Q 007255 202 ILKLYTKKVPLDAN----------------------------------VDLEAIATSCNGYV------GADLEALCREAT 241 (611)
Q Consensus 202 Il~~~~~~~~~~~~----------------------------------~~~~~la~~~~g~~------~~dl~~l~~~a~ 241 (611)
|+..++........ .+++.+.....|.. -.++..+.+-+.
T Consensus 281 if~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i~~~~~~~~~~~~~l~~~~~ 360 (1395)
T KOG3595|consen 281 IFNTILTGHLRFAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGILLAVSEALLTLEDLIRLWV 360 (1395)
T ss_pred HHHHHHhcccCccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhheeehcccCcHhhccHHHHHHHHH
Confidence 99988765532110 01222222222221 123455666666
Q ss_pred HHHhhhcccccccccccchhHHHHHHHHhccC-------CcccccccccCCCcccccccchhHHHHHHHHHhhc------
Q 007255 242 MSAVKRSSDANECAGVLSVTMEDWRHARSVVG-------PSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEW------ 308 (611)
Q Consensus 242 ~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~-------~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~------ 308 (611)
..+.+-+.+.-..........+.+........ |.....+..... ..|.++...+.+...+...+..
T Consensus 361 ~e~~rv~~drlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~l~~~~~~~l~~~~~~~~ 439 (1395)
T KOG3595|consen 361 HEAIRVFADRLVDDEDRQWFDKKLQEVLLKLFEADSLQMPLLYGDFRSESH-KIYEEVLSVELLRGVLEAYLKQFNIEEI 439 (1395)
T ss_pred HHHHHhhhhhcccHHHHHHHHHHHHHHHHHHhhhhhhcCCceeeecccccc-cccCchHhHHHHHHHHHHHHHHHhhhcc
Confidence 66666555433222222222222222222111 111111110000 3355555555555444333221
Q ss_pred ----------cCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccccccchHHHHHHHHHH
Q 007255 309 ----------PIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQR 378 (611)
Q Consensus 309 ----------~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 378 (611)
...|.....+.-..+..+.++.|-.|+||+++.+..+...+..++.+.....+. ..+....++.+...
T Consensus 440 ~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~~~~~y~--~~~~~~dl~~~~r~ 517 (1395)
T KOG3595|consen 440 RPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIEITRSYN--IEDFREDLKAILRK 517 (1395)
T ss_pred CCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCCcccHHHHHHhhccccceeeeccccCc--HHHHHHHHHHHHHH
Confidence 112233334444567788999999999999999999999998888776554332 22334556666666
Q ss_pred HHhcCCc-EEEEcc
Q 007255 379 ARLAAPS-IIFFDE 391 (611)
Q Consensus 379 a~~~~p~-il~iDe 391 (611)
+...+.. ++.++|
T Consensus 518 ~g~~~~~~~f~~~~ 531 (1395)
T KOG3595|consen 518 AGLKNKETVFILTD 531 (1395)
T ss_pred hccCCCceEEeech
Confidence 5544433 444444
No 423
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.60 E-value=1.9e-07 Score=96.25 Aligned_cols=194 Identities=22% Similarity=0.243 Sum_probs=117.4
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhcc
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYS 362 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~ 362 (611)
.....+|+|......++.+.+... .+....+||.|.+||||..+|++|-+.. +.+|+.+|++.+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 456778999988888887776631 1334579999999999999999999887 68999999965533
Q ss_pred ---------ccccchHHHHH---HHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCC-----C
Q 007255 363 ---------MYVGESEALLR---NTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL-----E 425 (611)
Q Consensus 363 ---------~~~g~~~~~~~---~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~ 425 (611)
...|.+.+.+. .-|+.| ...-||+|||..+ .-.++..||..|..- .
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElA---dGGTLFLDEIGel--------------PL~lQaKLLRvLQegEieRvG 350 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELA---DGGTLFLDEIGEL--------------PLALQAKLLRVLQEGEIERVG 350 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeec---CCCeEechhhccC--------------CHHHHHHHHHHHhhcceeecC
Confidence 22232222111 123222 2449999999766 245667777766421 1
Q ss_pred CCC----CeEEEEecCCCcccchhccCCCCcc-------ceeecCCCCHHHHH----HHHHHHh----cCCCC-C---Cc
Q 007255 426 QAK----GILVLAATNRPHAIDAALMRPGRFD-------LVLYVPPPDLEARH----EILRVHT----RNMKV-G---DD 482 (611)
Q Consensus 426 ~~~----~~~vI~~tn~~~~ld~al~r~gRf~-------~~i~~~~p~~~~r~----~il~~~~----~~~~~-~---~~ 482 (611)
... .|.||++||+- +..++.. |+|- .++.+..|-..+|. -+.+.++ +.... . +.
T Consensus 351 ~~r~ikVDVRiIAATNRD--L~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~ 427 (550)
T COG3604 351 GDRTIKVDVRVIAATNRD--LEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSA 427 (550)
T ss_pred CCceeEEEEEEEeccchh--HHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCH
Confidence 111 48899999972 2222221 3332 14444455555543 2222222 22333 1 22
Q ss_pred ccHHHHHHhCC-CCCHHHHHHHHHHHHHHH
Q 007255 483 VDLRSIAEETE-LFTGAELEGLCREAGIVA 511 (611)
Q Consensus 483 ~~~~~la~~~~-g~s~~~i~~~~~~a~~~a 511 (611)
..++.|..... | +-+++++++..|...|
T Consensus 428 ~Al~~L~~y~wPG-NVRELen~veRavlla 456 (550)
T COG3604 428 EALELLSSYEWPG-NVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHcCCCCC-cHHHHHHHHHHHHHHh
Confidence 33444444432 4 5689999999999977
No 424
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.60 E-value=2.1e-07 Score=90.83 Aligned_cols=182 Identities=21% Similarity=0.275 Sum_probs=98.9
Q ss_pred chhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCC---cEEeecc---------hhh-
Q 007255 294 GLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA---SFFSLSG---------AEL- 360 (611)
Q Consensus 294 g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~---~~~~~~~---------~~~- 360 (611)
|.+.-.+.|.+.+.. .+...++++||.|+|||++++.+.+.... ..+.+.. ..+
T Consensus 3 gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 3 GREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 445555566655542 23467999999999999999999998832 1111111 000
Q ss_pred ------------cc-c------------cccchHHHHHHHHHHHHhcC-CcEEEEccccccc-ccCCCCCCCCcchhHHH
Q 007255 361 ------------YS-M------------YVGESEALLRNTFQRARLAA-PSIIFFDEADVVG-AKRGGSSSTSITVGERL 413 (611)
Q Consensus 361 ------------~~-~------------~~g~~~~~~~~~~~~a~~~~-p~il~iDeid~l~-~~~~~~~~~~~~~~~~~ 413 (611)
.. . ........+..+++...... ..||+|||++.+. +.. ....+
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~ 140 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDF 140 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHH
Confidence 00 0 00122345666666665533 4799999999996 211 12456
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCCccc------chhccCCCCccceeecCCCCHHHHHHHHHHHhcCCC-C-CCcccH
Q 007255 414 LSTLLTEMDGLEQAKGILVLAATNRPHAI------DAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMK-V-GDDVDL 485 (611)
Q Consensus 414 ~~~ll~~l~~~~~~~~~~vI~~tn~~~~l------d~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~-~-~~~~~~ 485 (611)
...|...++......++.+|.++...... ...+. +|+.. +.+++.+.++..++++..++... + .++.++
T Consensus 141 ~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 67777777654445555555555443222 12233 37876 99999999999999998766551 1 256678
Q ss_pred HHHHHhCCCCCHHHHH
Q 007255 486 RSIAEETELFTGAELE 501 (611)
Q Consensus 486 ~~la~~~~g~s~~~i~ 501 (611)
+.+...+.|+ |+.|.
T Consensus 218 ~~i~~~~gG~-P~~l~ 232 (234)
T PF01637_consen 218 EEIYSLTGGN-PRYLQ 232 (234)
T ss_dssp HHHHHHHTT--HHHHH
T ss_pred HHHHHHhCCC-HHHHh
Confidence 8888888884 55443
No 425
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.59 E-value=2.9e-06 Score=81.75 Aligned_cols=129 Identities=22% Similarity=0.295 Sum_probs=81.2
Q ss_pred CCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC------------cccccHHhhccC
Q 007255 116 KPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR------------VDAIDPALRRSG 183 (611)
Q Consensus 116 ~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~------------~~~l~~~l~~~~ 183 (611)
-|+||||||+|.|- .+-.+.|...++.. ..++++++ ||+ |..++-.+..
T Consensus 288 vpGVLFIDEvHMLD----------IEcFsFlNrAlE~d------~~Piiima-TNrgit~iRGTn~~SphGiP~D~lD-- 348 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLD----------IECFSFLNRALEND------MAPIIIMA-TNRGITRIRGTNYRSPHGIPIDLLD-- 348 (454)
T ss_pred ccceEEEeeehhhh----------hHHHHHHHHHhhhc------cCcEEEEE-cCCceEEeecCCCCCCCCCcHHHhh--
Confidence 37799999988662 23344555555542 12345544 443 4577888887
Q ss_pred CcceEEEccCCCHHHHHHHHHHhhcCCCCCCccc-HHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccccccchhH
Q 007255 184 RFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTM 262 (611)
Q Consensus 184 Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ 262 (611)
|.. .|...+++.++..+|++..+.......+.+ ++.+......-+-+---+|+..+...+.+|... .+..
T Consensus 349 R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~--------~v~~ 419 (454)
T KOG2680|consen 349 RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK--------VVEV 419 (454)
T ss_pred hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc--------eeeh
Confidence 764 788999999999999999997765443322 444444444444555567777777777776543 3445
Q ss_pred HHHHHHHhcc
Q 007255 263 EDWRHARSVV 272 (611)
Q Consensus 263 ed~~~a~~~i 272 (611)
+|+..+...+
T Consensus 420 ~di~r~y~LF 429 (454)
T KOG2680|consen 420 DDIERVYRLF 429 (454)
T ss_pred hHHHHHHHHH
Confidence 5555554433
No 426
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.58 E-value=1.6e-07 Score=83.77 Aligned_cols=126 Identities=30% Similarity=0.467 Sum_probs=76.6
Q ss_pred CCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEcccccccccccchH
Q 007255 22 GGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA---HLTVISPHSVHKAHVGESE 98 (611)
Q Consensus 22 ~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~---~~~~v~~~~~~~~~~~~~~ 98 (611)
+|.....+.+.+.+.... ....+|+|+|++||||+++|+++....+. +++.+++....
T Consensus 1 vG~S~~~~~l~~~l~~~a-----------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-----------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-----------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHHh-----------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 355566666666654421 24579999999999999999999887653 34444444332
Q ss_pred HHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC-cc----
Q 007255 99 KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR-VD---- 173 (611)
Q Consensus 99 ~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~-~~---- 173 (611)
.+.++.+ +++.|||+|+|.|.+ ..+..|+..+...... ++.+|+++.. ..
T Consensus 62 ---~~~l~~a-------~~gtL~l~~i~~L~~----------~~Q~~L~~~l~~~~~~-----~~RlI~ss~~~l~~l~~ 116 (138)
T PF14532_consen 62 ---AELLEQA-------KGGTLYLKNIDRLSP----------EAQRRLLDLLKRQERS-----NVRLIASSSQDLEELVE 116 (138)
T ss_dssp ---HHHHHHC-------TTSEEEEECGCCS-H----------HHHHHHHHHHHHCTTT-----TSEEEEEECC-CCCHHH
T ss_pred ---HHHHHHc-------CCCEEEECChHHCCH----------HHHHHHHHHHHhcCCC-----CeEEEEEeCCCHHHHhh
Confidence 2334443 377999999998855 6678888888764311 3455555544 22
Q ss_pred --cccHHhhccCCcc-eEEEccC
Q 007255 174 --AIDPALRRSGRFD-AEVEVTV 193 (611)
Q Consensus 174 --~l~~~l~~~~Rf~-~~i~~~~ 193 (611)
.+++.|.. |+. ..|.+|+
T Consensus 117 ~~~~~~~L~~--~l~~~~i~lPp 137 (138)
T PF14532_consen 117 EGRFSPDLYY--RLSQLEIHLPP 137 (138)
T ss_dssp HSTHHHHHHH--HCSTCEEEE--
T ss_pred ccchhHHHHH--HhCCCEEeCCC
Confidence 45666665 554 3455554
No 427
>PRK08181 transposase; Validated
Probab=98.58 E-value=1.9e-07 Score=92.22 Aligned_cols=87 Identities=24% Similarity=0.364 Sum_probs=54.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccc-hHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGE-SEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~-~~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
...+++|+||||||||+++.+++.++ |..++.++..++....... ........+... .++.+|+|||++.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l------~~~dLLIIDDlg~ 178 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL------DKFDLLILDDLAY 178 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH------hcCCEEEEecccc
Confidence 34689999999999999999998765 5667777766654432110 001122222222 2356999999987
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHhc
Q 007255 128 LCPRRDHRREQDVRIASQLFTLMDS 152 (611)
Q Consensus 128 l~~~~~~~~~~~~~~~~~ll~~l~~ 152 (611)
+.... .....|+++++.
T Consensus 179 ~~~~~--------~~~~~Lf~lin~ 195 (269)
T PRK08181 179 VTKDQ--------AETSVLFELISA 195 (269)
T ss_pred ccCCH--------HHHHHHHHHHHH
Confidence 64421 334566666664
No 428
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.57 E-value=7.2e-07 Score=87.08 Aligned_cols=181 Identities=28% Similarity=0.369 Sum_probs=96.5
Q ss_pred CCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---EEEcc-ccccc------
Q 007255 22 GGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL---TVISP-HSVHK------ 91 (611)
Q Consensus 22 ~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~---~~v~~-~~~~~------ 91 (611)
+|.++..+.|.+++.. .....++|+||.|+|||++++.+.+.+...- +.+.. .....
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 5788888888887643 1347999999999999999999999884321 11111 00000
Q ss_pred ----------------c------------cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccC-CCCCCCchhhHHH
Q 007255 92 ----------------A------------HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALC-PRRDHRREQDVRI 142 (611)
Q Consensus 92 ----------------~------------~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~-~~~~~~~~~~~~~ 142 (611)
. ........+..+++..... ....||+|||++.+. ... .....
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~iiviDe~~~~~~~~~-----~~~~~ 140 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKK---GKKVIIVIDEFQYLAIASE-----EDKDF 140 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC---HCCEEEEEETGGGGGBCTT-----TTHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc---CCcEEEEEecHHHHhhccc-----chHHH
Confidence 0 0011123344444443322 234899999999997 221 12356
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEEeecCcccc------cHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCC-C-CC
Q 007255 143 ASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI------DPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVP-L-DA 214 (611)
Q Consensus 143 ~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l------~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~-~-~~ 214 (611)
...+.+.++..... .++.+|.+....... ...+. +|+.. +.+++.+.++..+++........ + ..
T Consensus 141 ~~~l~~~~~~~~~~----~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~ 213 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQ----QNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFS 213 (234)
T ss_dssp HHHHHHHHHH--------TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHhhcccc----CCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCC
Confidence 66777777662221 133344433332111 12232 37765 99999999999999998766651 1 24
Q ss_pred cccHHHHHHhccCCcc
Q 007255 215 NVDLEAIATSCNGYVG 230 (611)
Q Consensus 215 ~~~~~~la~~~~g~~~ 230 (611)
+.+++.+...+.|..+
T Consensus 214 ~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 214 DEDIEEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHhCCCHH
Confidence 5568888888888654
No 429
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.56 E-value=6.4e-07 Score=97.02 Aligned_cols=78 Identities=18% Similarity=0.083 Sum_probs=55.0
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccc--------------c------------c--cch
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM--------------Y------------V--GES 368 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~--------------~------------~--g~~ 368 (611)
|+.+...+|+.||||+|||+++..++.+. |-+.++++..+-... + . ...
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 67777889999999999999999988765 444455544222111 0 0 011
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcccccccc
Q 007255 369 EALLRNTFQRARLAAPSIIFFDEADVVGA 397 (611)
Q Consensus 369 ~~~~~~~~~~a~~~~p~il~iDeid~l~~ 397 (611)
+..+..+.+.+....|.+++||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 55677778888888999999999987753
No 430
>PF13173 AAA_14: AAA domain
Probab=98.55 E-value=2.3e-07 Score=81.61 Aligned_cols=69 Identities=23% Similarity=0.297 Sum_probs=46.5
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhC--CcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccc
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAE--ASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVV 395 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l 395 (611)
+.++++||.|||||++++.++.... .+++.++..+.........+ +...+.......+.++||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4589999999999999999998876 77777777655432111111 223333322225679999999877
No 431
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.55 E-value=5.6e-07 Score=94.19 Aligned_cols=195 Identities=19% Similarity=0.225 Sum_probs=116.9
Q ss_pred cccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccc
Q 007255 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM 363 (611)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~ 363 (611)
....+++|....-+++.+.+... ....-.+|++|++||||..+|++|.... +.||+.+||+.+...
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 35677889888888887776531 1333569999999999999999999877 579999999765432
Q ss_pred ---------cccchHHHHH---HHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-----C
Q 007255 364 ---------YVGESEALLR---NTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-----Q 426 (611)
Q Consensus 364 ---------~~g~~~~~~~---~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~ 426 (611)
..|.+..... ..|+.| ....||+|||..+ ...++..||..|..-. .
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~m--------------pl~~Q~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEM--------------PLELQVKLLRVLQEREFERVGG 269 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccC--------------CHHHHHHHHHHHHcCeeEecCC
Confidence 2222211111 123333 3459999999765 3567778887775311 1
Q ss_pred ----CCCeEEEEecCCCc--ccc-----hhccCCCCccceeecCCCCHHHHH----HHHHHHh----cCCCCC----Ccc
Q 007255 427 ----AKGILVLAATNRPH--AID-----AALMRPGRFDLVLYVPPPDLEARH----EILRVHT----RNMKVG----DDV 483 (611)
Q Consensus 427 ----~~~~~vI~~tn~~~--~ld-----~al~r~gRf~~~i~~~~p~~~~r~----~il~~~~----~~~~~~----~~~ 483 (611)
.-.+.||++||+.= .+. +.|.- |+. ++.+..|...+|. -+++.++ ...... +..
T Consensus 270 ~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~ 346 (464)
T COG2204 270 NKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPE 346 (464)
T ss_pred CcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 11478999998632 222 22322 454 5666667666655 2333333 222211 222
Q ss_pred cHHHHHHhCC-CCCHHHHHHHHHHHHHHHHH
Q 007255 484 DLRSIAEETE-LFTGAELEGLCREAGIVALR 513 (611)
Q Consensus 484 ~~~~la~~~~-g~s~~~i~~~~~~a~~~a~~ 513 (611)
.+..|....+ | +-+++++++..+...+-.
T Consensus 347 a~~~L~~y~WPG-NVREL~N~ver~~il~~~ 376 (464)
T COG2204 347 ALAALLAYDWPG-NVRELENVVERAVILSEG 376 (464)
T ss_pred HHHHHHhCCCCh-HHHHHHHHHHHHHhcCCc
Confidence 3344443332 4 557888888877666543
No 432
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=3.4e-06 Score=86.41 Aligned_cols=199 Identities=18% Similarity=0.199 Sum_probs=128.1
Q ss_pred ccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-----CCcEEeecchhhccc-
Q 007255 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSM- 363 (611)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~~~~~~~~- 363 (611)
..+.|.+.-.+.+++++..++. ...+.++.+.|-||||||.+..-+-... ....+++++..+...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle---------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE---------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh---------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 3466778778888888775443 3556789999999999999888655443 224467777653321
Q ss_pred ---------c----cc-chHHHHHHHHHHHH-hc-CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCC
Q 007255 364 ---------Y----VG-ESEALLRNTFQRAR-LA-APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQA 427 (611)
Q Consensus 364 ---------~----~g-~~~~~~~~~~~~a~-~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 427 (611)
+ .+ ..+......|.... +. .+-++++||+|.|.... +.++..|. ++.. .+.
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lF-ewp~-lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLF-EWPK-LPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeeh-hccc-CCc
Confidence 1 11 11223333443332 22 25699999999996221 11222221 1121 367
Q ss_pred CCeEEEEecCCCcccchhccCC----CCccceeecCCCCHHHHHHHHHHHhcCCCCCCc--ccHHHHHHhCCCCCHHHHH
Q 007255 428 KGILVLAATNRPHAIDAALMRP----GRFDLVLYVPPPDLEARHEILRVHTRNMKVGDD--VDLRSIAEETELFTGAELE 501 (611)
Q Consensus 428 ~~~~vI~~tn~~~~ld~al~r~----gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~g~s~~~i~ 501 (611)
.++++||.+|..+.-|..|-|- +--...+.|++++.++...|++..+...+.... ..++..|+...|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 7899999999999877766542 223478999999999999999988877765543 457888888888765 444
Q ss_pred ---HHHHHHHHHH
Q 007255 502 ---GLCREAGIVA 511 (611)
Q Consensus 502 ---~~~~~a~~~a 511 (611)
.+|+.|...+
T Consensus 367 kaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 367 KALDVCRRAIEIA 379 (529)
T ss_pred HHHHHHHHHHHHH
Confidence 4456555544
No 433
>PRK09183 transposase/IS protein; Provisional
Probab=98.55 E-value=1.3e-07 Score=93.51 Aligned_cols=72 Identities=26% Similarity=0.341 Sum_probs=49.3
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccc-hHHHHHHHHHHHHhcCCcEEEEcccccc
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGE-SEALLRNTFQRARLAAPSIIFFDEADVV 395 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~a~~~~p~il~iDeid~l 395 (611)
...+++|+||||||||++|.+++..+ |..+..++..++...+... ....+..++... ...+++++|||++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 34679999999999999999998764 6677777777765433211 111233444433 246679999999765
No 434
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.54 E-value=4.7e-07 Score=92.20 Aligned_cols=111 Identities=23% Similarity=0.335 Sum_probs=65.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccc---hHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGE---SEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~---~~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
.+++|+||+|||||+|+.++|+++ +..++.+++.++....... ........+... ....+|+|||+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l------~~~DLLIIDDlG~ 257 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL------INCDLLIIDDLGT 257 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh------ccCCEEEEeccCC
Confidence 789999999999999999999987 6677777776654422110 000011112222 1345999999976
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC-ccc----ccHHhhccCCc
Q 007255 128 LCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR-VDA----IDPALRRSGRF 185 (611)
Q Consensus 128 l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~-~~~----l~~~l~~~~Rf 185 (611)
.... ......|+.+++....... .+|.|||. +.. +++++.+ |+
T Consensus 258 e~~t--------~~~~~~Lf~iin~R~~~~k-----~tIiTSNl~~~el~~~~~eri~S--RL 305 (329)
T PRK06835 258 EKIT--------EFSKSELFNLINKRLLRQK-----KMIISTNLSLEELLKTYSERISS--RL 305 (329)
T ss_pred CCCC--------HHHHHHHHHHHHHHHHCCC-----CEEEECCCCHHHHHHHHhHHHHH--HH
Confidence 5321 1334566666665322211 24555665 333 3556665 54
No 435
>PRK12377 putative replication protein; Provisional
Probab=98.52 E-value=4.3e-07 Score=88.65 Aligned_cols=101 Identities=21% Similarity=0.224 Sum_probs=59.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccchH--HHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESE--KALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~~--~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
..+++|+||||||||+|+.++++.+ +..++.++..++......... .....++... .+..+|+|||++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l------~~~dLLiIDDlg~ 174 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL------CKVDLLVLDEIGI 174 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh------cCCCEEEEcCCCC
Confidence 3689999999999999999999987 456666666555432211000 0011122221 3466999999965
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCc
Q 007255 128 LCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRV 172 (611)
Q Consensus 128 l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~ 172 (611)
.... + .....|+.+++...... ...|.|||..
T Consensus 175 ~~~s-----~---~~~~~l~~ii~~R~~~~-----~ptiitSNl~ 206 (248)
T PRK12377 175 QRET-----K---NEQVVLNQIIDRRTASM-----RSVGMLTNLN 206 (248)
T ss_pred CCCC-----H---HHHHHHHHHHHHHHhcC-----CCEEEEcCCC
Confidence 4321 1 23455666666533221 2356677863
No 436
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.52 E-value=1.3e-06 Score=97.87 Aligned_cols=160 Identities=21% Similarity=0.202 Sum_probs=90.6
Q ss_pred cccchhHHHHHHHHHhhccCCChhHH--------hhcCCCCCCCcceeCCCCCChHHHHHHHHHHhC-------CcEEee
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAF--------SRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE-------ASFFSL 355 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~-------~~~~~~ 355 (611)
.|.|.+.+|+.+.-.+.......... ....++...++||+|+||||||.+|++++.... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 57899999988765553322110000 001233445899999999999999999998653 222222
Q ss_pred cchhhccccccchHHHHHHHHH--HHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--------
Q 007255 356 SGAELYSMYVGESEALLRNTFQ--RARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-------- 425 (611)
Q Consensus 356 ~~~~~~~~~~g~~~~~~~~~~~--~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------- 425 (611)
....... +.+...+.. .++ ........+++|||++.+ .......|+..|+.-.
T Consensus 531 gLTa~~~-~~d~~tG~~--~le~GaLvlAdgGtL~IDEidkm--------------s~~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 531 GLTASIK-FNESDNGRA--MIQPGAVVLANGGVCCIDELDKC--------------HNESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred cccchhh-hcccccCcc--cccCCcEEEcCCCeEEecchhhC--------------CHHHHHHHHHHHhCCEEEEecCCc
Confidence 2211110 000000000 000 001122359999999987 2445677777775421
Q ss_pred ---CCCCeEEEEecCCCc-------------ccchhccCCCCcccee-ecCCCCHHHHHHH
Q 007255 426 ---QAKGILVLAATNRPH-------------AIDAALMRPGRFDLVL-YVPPPDLEARHEI 469 (611)
Q Consensus 426 ---~~~~~~vI~~tn~~~-------------~ld~al~r~gRf~~~i-~~~~p~~~~r~~i 469 (611)
-+.++.||+|+|..+ .+++++++ |||.++ .++.|+.+.=..|
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHH
Confidence 124789999999642 47789998 999554 3556776544444
No 437
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.51 E-value=1.7e-06 Score=83.67 Aligned_cols=136 Identities=20% Similarity=0.237 Sum_probs=77.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCC
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPR 131 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~ 131 (611)
...+..++||+|||||..++.+|+.+|..++.++|++..+ ...+..+|.-+.+. ++++.+||+|.|-..
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-----GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-----GAWLCFDEFNRLSEE 99 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-----T-EEEEETCCCSSHH
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-----CchhhhhhhhhhhHH
Confidence 4467789999999999999999999999999999987543 34566667666554 789999999988431
Q ss_pred CCCCchhhHHHHHHHHHHHhcCCCC-------CCCCCcEEEEEeecCc----ccccHHhhccCCcceEEEccCCCHHHHH
Q 007255 132 RDHRREQDVRIASQLFTLMDSNKPS-------KTSVPHVVVVASTNRV----DAIDPALRRSGRFDAEVEVTVPTAEERF 200 (611)
Q Consensus 132 ~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~~~v~ii~ttn~~----~~l~~~l~~~~Rf~~~i~~~~p~~~~r~ 200 (611)
. -..-...+..+...+...... ..-.+++-++.|+|+. ..+++.++. -| +.+.+-.||.....
T Consensus 100 v---LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~ 173 (231)
T PF12774_consen 100 V---LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIA 173 (231)
T ss_dssp H---HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHH
T ss_pred H---HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHH
Confidence 0 000001112222222221110 0112245667777753 478888886 44 58999999987766
Q ss_pred HHHH
Q 007255 201 EILK 204 (611)
Q Consensus 201 ~Il~ 204 (611)
+++-
T Consensus 174 ei~L 177 (231)
T PF12774_consen 174 EILL 177 (231)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 438
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.50 E-value=5.2e-07 Score=97.44 Aligned_cols=197 Identities=18% Similarity=0.225 Sum_probs=111.7
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccc
Q 007255 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHV 94 (611)
Q Consensus 18 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~ 94 (611)
+..++|.....+.+.+.+... .....+++++|++||||+++|+++.... +.+++.++|..+.....
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred ccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 345666666666655544321 1234689999999999999999998765 45899999987632211
Q ss_pred cchHHHHHHHHHHHH-----------hhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----CC
Q 007255 95 GESEKALREAFSQAS-----------SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KT 158 (611)
Q Consensus 95 ~~~~~~l~~~f~~~~-----------~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~ 158 (611)
-..+|.... .......++.|||||++.|.+ ..+..|+..++..... ..
T Consensus 207 ------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~----------~~q~~l~~~l~~~~~~~~~~~~~ 270 (445)
T TIGR02915 207 ------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPL----------NLQAKLLRFLQERVIERLGGREE 270 (445)
T ss_pred ------HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCH----------HHHHHHHHHHhhCeEEeCCCCce
Confidence 011121100 001123467999999998865 6788888888764311 11
Q ss_pred CCCcEEEEEeecCc-------ccccHHhhccCCcceEEEccCCCHHHHHH----HHHHhhcCC----CCC-Ccc---cHH
Q 007255 159 SVPHVVVVASTNRV-------DAIDPALRRSGRFDAEVEVTVPTAEERFE----ILKLYTKKV----PLD-ANV---DLE 219 (611)
Q Consensus 159 ~~~~v~ii~ttn~~-------~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~----Il~~~~~~~----~~~-~~~---~~~ 219 (611)
...++.+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+ ++++++... ... ... -+.
T Consensus 271 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 347 (445)
T TIGR02915 271 IPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALR 347 (445)
T ss_pred eeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 22357888888764 234455544 543 34555555555543 444444322 111 111 133
Q ss_pred HHHHhccCCccccHHHHHHHHHHHH
Q 007255 220 AIATSCNGYVGADLEALCREATMSA 244 (611)
Q Consensus 220 ~la~~~~g~~~~dl~~l~~~a~~~a 244 (611)
.+....=-.+.++|++++..++..+
T Consensus 348 ~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 348 ALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC
Confidence 3333221224577888888777543
No 439
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.49 E-value=2.2e-07 Score=93.96 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=49.1
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccch-HHHHHHHHHHHHhcCCcEEEEccccc
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGES-EALLRNTFQRARLAAPSIIFFDEADV 394 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~p~il~iDeid~ 394 (611)
..+|++|+||+|||||+|+.|+|+++ |.++..+..+++........ .......++.. ...++|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCC
Confidence 45789999999999999999999998 77788888777765432211 11122333332 3456999999964
No 440
>PF13173 AAA_14: AAA domain
Probab=98.49 E-value=9.5e-07 Score=77.72 Aligned_cols=120 Identities=24% Similarity=0.373 Sum_probs=72.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCC
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECG--AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCP 130 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~--~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~ 130 (611)
.+.++|.||.|||||++++.+++.+. .+++.++..+.......... +.+.+.+.. ..++.++||||++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~i~iDEiq~~~- 74 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELI----KPGKKYIFIDEIQYLP- 74 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhh----ccCCcEEEEehhhhhc-
Confidence 35789999999999999999999887 77888887765432111100 222222221 1246799999998763
Q ss_pred CCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccc----ccHHhhccCCcceEEEccCCCHHHH
Q 007255 131 RRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA----IDPALRRSGRFDAEVEVTVPTAEER 199 (611)
Q Consensus 131 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~----l~~~l~~~~Rf~~~i~~~~p~~~~r 199 (611)
.+...+-.+.+.. .++.+|.|++.... ....+ .||.. .+++.+++..|.
T Consensus 75 ----------~~~~~lk~l~d~~-------~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E~ 127 (128)
T PF13173_consen 75 ----------DWEDALKFLVDNG-------PNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFREF 127 (128)
T ss_pred ----------cHHHHHHHHHHhc-------cCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHHh
Confidence 3444455555532 12344444443332 23344 44764 788888887663
No 441
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.48 E-value=9.1e-07 Score=86.18 Aligned_cols=70 Identities=26% Similarity=0.424 Sum_probs=46.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccc---hHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGE---SEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~---~~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
.+++|+|+||||||+++.++++++ +..++.++..++....... .......+++.. .+..+|+|||++.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l------~~~dlLvIDDig~ 173 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL------SNVDLLVIDEIGV 173 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh------ccCCEEEEeCCCC
Confidence 589999999999999999999988 6677777766654322111 001111222222 2356999999976
Q ss_pred cC
Q 007255 128 LC 129 (611)
Q Consensus 128 l~ 129 (611)
..
T Consensus 174 ~~ 175 (244)
T PRK07952 174 QT 175 (244)
T ss_pred CC
Confidence 54
No 442
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=2.6e-06 Score=84.74 Aligned_cols=147 Identities=14% Similarity=0.199 Sum_probs=99.2
Q ss_pred cHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE--------EEccc--------
Q 007255 24 NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLT--------VISPH-------- 87 (611)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~--------~v~~~-------- 87 (611)
+..+++.|..++.. -+.+..+||+|| +||+++|+.+|+.+.+.-. .-+|.
T Consensus 7 q~~~~~~L~~~~~~------------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HP 72 (290)
T PRK07276 7 QPKVFQRFQTILEQ------------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFS 72 (290)
T ss_pred HHHHHHHHHHHHHc------------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45556666665533 245678999996 6899999999987743210 00000
Q ss_pred cccccc-cc--chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEE
Q 007255 88 SVHKAH-VG--ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (611)
Q Consensus 88 ~~~~~~-~~--~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ 164 (611)
++..-. .| -....++++.......+..+...|++||++|.|.. ...+.|++.+++ ++.+++
T Consensus 73 D~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~----------~AaNaLLKtLEE------Pp~~t~ 136 (290)
T PRK07276 73 DVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHV----------NAANSLLKVIEE------PQSEIY 136 (290)
T ss_pred CeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCH----------HHHHHHHHHhcC------CCCCeE
Confidence 111000 01 22456666666666555556677999999999854 568999999997 445688
Q ss_pred EEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHH
Q 007255 165 VVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILK 204 (611)
Q Consensus 165 ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~ 204 (611)
+|.+|+.++.+-|.++| |+. .+.|+. +.++..+++.
T Consensus 137 ~iL~t~~~~~lLpTI~S--Rcq-~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 137 IFLLTNDENKVLPTIKS--RTQ-IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EEEEECChhhCchHHHH--cce-eeeCCC-cHHHHHHHHH
Confidence 88889999999999999 884 788866 5666666664
No 443
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.48 E-value=6.4e-08 Score=90.04 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=46.8
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccch-HHHHHHHHHHHHhcCCcEEEEccccc
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGES-EALLRNTFQRARLAAPSIIFFDEADV 394 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~p~il~iDeid~ 394 (611)
...+++|+||||||||++|.++++++ |..+..++.+++........ .......++.. ...++|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc--ccccEecccccce
Confidence 34689999999999999999999877 88888899888876432210 11122333333 3456999999853
No 444
>PRK06921 hypothetical protein; Provisional
Probab=98.47 E-value=3.4e-07 Score=90.83 Aligned_cols=69 Identities=23% Similarity=0.299 Sum_probs=46.0
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHh----CCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEccccc
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAA----EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADV 394 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~ 394 (611)
...+++|+||||+|||+|+.|+|+++ +..++.++..++........ ......+.. ....++|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 35689999999999999999999986 56677777766654321111 111122222 23456999999954
No 445
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.45 E-value=2.2e-06 Score=93.18 Aligned_cols=198 Identities=18% Similarity=0.231 Sum_probs=111.9
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccc
Q 007255 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHV 94 (611)
Q Consensus 18 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~ 94 (611)
+.+++|.....+.+.+.+... .....++++.|++|||||++|+++.... +.+++.++|..+.....
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~-----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRL-----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred cccceecCHHHHHHHHHHHHH-----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 345666665555555444221 1235789999999999999999998876 46899999987632110
Q ss_pred cchHHHHHHHHHHHHh-----------hhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC-----C
Q 007255 95 GESEKALREAFSQASS-----------HALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK-----T 158 (611)
Q Consensus 95 ~~~~~~l~~~f~~~~~-----------~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-----~ 158 (611)
-..+|..... ......++.|||||++.|.. ..+..|+..++...... .
T Consensus 206 ------~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~----------~~q~~L~~~l~~~~~~~~~~~~~ 269 (469)
T PRK10923 206 ------ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL----------DVQTRLLRVLADGQFYRVGGYAP 269 (469)
T ss_pred ------HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH----------HHHHHHHHHHhcCcEEeCCCCCe
Confidence 1112211100 01122467899999998865 66788888887643211 1
Q ss_pred CCCcEEEEEeecCc-------ccccHHhhccCCcc-eEEEccCCC--HHHHHHHHHHhhcCC----CCCC-cc---cHHH
Q 007255 159 SVPHVVVVASTNRV-------DAIDPALRRSGRFD-AEVEVTVPT--AEERFEILKLYTKKV----PLDA-NV---DLEA 220 (611)
Q Consensus 159 ~~~~v~ii~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~--~~~r~~Il~~~~~~~----~~~~-~~---~~~~ 220 (611)
...++.+|++|+.. ..+.+.+.. |+. ..|.+|+.. .++...++.+++... .... .. -+..
T Consensus 270 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 347 (469)
T PRK10923 270 VKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAA 347 (469)
T ss_pred EEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 12356888888753 145566665 663 345555542 234444555555432 1111 11 1233
Q ss_pred HHHhccCCccccHHHHHHHHHHHH
Q 007255 221 IATSCNGYVGADLEALCREATMSA 244 (611)
Q Consensus 221 la~~~~g~~~~dl~~l~~~a~~~a 244 (611)
+....=-.+-++|+++++.++..+
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC
Confidence 322221224477888888776544
No 446
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=4.6e-06 Score=83.79 Aligned_cols=130 Identities=10% Similarity=0.161 Sum_probs=91.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc-------------EEEEcccccccccccchHHHHHHHHHHHHhhhhc-CCC
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAH-------------LTVISPHSVHKAHVGESEKALREAFSQASSHALS-GKP 117 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~-------------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~-~~~ 117 (611)
.+...||+|+.|+||+.+++.+++.+.+. +..++.. + ..-....++.+.+.....+.. +..
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g--~~i~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---D--KDLSKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---C--CcCCHHHHHHHHHHhccCCcccCCc
Confidence 44678899999999999999999987331 1222100 0 011223455554444333322 366
Q ss_pred eEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHH
Q 007255 118 SVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAE 197 (611)
Q Consensus 118 ~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~ 197 (611)
-|++||++|.+.. ...+.|+..+++ +++.+++|.+|+.++.+-+.+++ |+. .+.|.+|+.+
T Consensus 92 KvvII~~~e~m~~----------~a~NaLLK~LEE------Pp~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~~ 152 (299)
T PRK07132 92 KILIIKNIEKTSN----------SLLNALLKTIEE------PPKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQQ 152 (299)
T ss_pred eEEEEecccccCH----------HHHHHHHHHhhC------CCCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCHH
Confidence 7999999988743 567889999997 34456777777788899999998 874 8999999999
Q ss_pred HHHHHHHH
Q 007255 198 ERFEILKL 205 (611)
Q Consensus 198 ~r~~Il~~ 205 (611)
+..+.+..
T Consensus 153 ~l~~~l~~ 160 (299)
T PRK07132 153 KILAKLLS 160 (299)
T ss_pred HHHHHHHH
Confidence 98887765
No 447
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.44 E-value=4.1e-07 Score=81.17 Aligned_cols=86 Identities=20% Similarity=0.335 Sum_probs=56.5
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCC---cEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCC
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEA---SFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRG 400 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~ 400 (611)
...++|+|++||||+++|+++....+. +++.+++.++. ..+++.+ .+..|||+|+|.+-
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~---- 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS---- 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-----
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC----
Confidence 356999999999999999999987753 55555555432 2233333 66699999999882
Q ss_pred CCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 007255 401 GSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNR 438 (611)
Q Consensus 401 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 438 (611)
......|+..++..+ ..++.+|++|..
T Consensus 83 ----------~~~Q~~L~~~l~~~~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 83 ----------PEAQRRLLDLLKRQE-RSNVRLIASSSQ 109 (138)
T ss_dssp ----------HHHHHHHHHHHHHCT-TTTSEEEEEECC
T ss_pred ----------HHHHHHHHHHHHhcC-CCCeEEEEEeCC
Confidence 445566666665433 445566655554
No 448
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.43 E-value=1.1e-05 Score=89.02 Aligned_cols=53 Identities=25% Similarity=0.381 Sum_probs=43.7
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 007255 12 NEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA 79 (611)
Q Consensus 12 ~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~ 79 (611)
+.....+++++|++++++.|..++.. +.+++|+||||||||++++++++.+..
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 34446779999999999998887643 248999999999999999999988753
No 449
>PRK06526 transposase; Provisional
Probab=98.43 E-value=2.7e-07 Score=90.80 Aligned_cols=87 Identities=21% Similarity=0.331 Sum_probs=50.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccc-hHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGE-SEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~-~~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
.+.+++|+||||||||+++.+++.++ |..+..+++.++....... ....+...+.. ..++.+|+|||++.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~------l~~~dlLIIDD~g~ 170 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK------LGRYPLLIVDEVGY 170 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH------hccCCEEEEccccc
Confidence 35789999999999999999998875 4455445544433221100 00011111211 12367999999987
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHhc
Q 007255 128 LCPRRDHRREQDVRIASQLFTLMDS 152 (611)
Q Consensus 128 l~~~~~~~~~~~~~~~~~ll~~l~~ 152 (611)
+.... .....++.+++.
T Consensus 171 ~~~~~--------~~~~~L~~li~~ 187 (254)
T PRK06526 171 IPFEP--------EAANLFFQLVSS 187 (254)
T ss_pred CCCCH--------HHHHHHHHHHHH
Confidence 64321 333455566654
No 450
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=2.2e-06 Score=83.08 Aligned_cols=124 Identities=12% Similarity=0.039 Sum_probs=84.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccc--------------ccccccc---cchHHHHHHHHHHHHhhhh-
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH--------------SVHKAHV---GESEKALREAFSQASSHAL- 113 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~--------------~~~~~~~---~~~~~~l~~~f~~~~~~~~- 113 (611)
+|..+||+||+|+||..+|.++|+.+-+.--.-.|. ++.--.+ .-....++++-+.......
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 567899999999999999999998874321000010 1110000 1123344444444332221
Q ss_pred cCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccC
Q 007255 114 SGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTV 193 (611)
Q Consensus 114 ~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 193 (611)
.+..-|++|+++|.|.. ...+.|+..+++ ++.++++|.+|+.++.+.|.++| |+. .+.++.
T Consensus 86 ~~~~KV~II~~ae~m~~----------~AaNaLLK~LEE------Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~ 146 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNK----------QSANSLLKLIEE------PPKNTYGIFTTRNENNILNTILS--RCV-QYVVLS 146 (261)
T ss_pred cCCCEEEEeccHhhhCH----------HHHHHHHHhhcC------CCCCeEEEEEECChHhCchHhhh--hee-eeecCC
Confidence 23456999999998854 678999999997 55678999999999999999999 874 677777
Q ss_pred C
Q 007255 194 P 194 (611)
Q Consensus 194 p 194 (611)
+
T Consensus 147 ~ 147 (261)
T PRK05818 147 K 147 (261)
T ss_pred h
Confidence 6
No 451
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.41 E-value=8.4e-07 Score=95.83 Aligned_cols=165 Identities=22% Similarity=0.247 Sum_probs=97.9
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccchHHHHHHHHHH---------------HHhcCCc
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQR---------------ARLAAPS 385 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------a~~~~p~ 385 (611)
..+++++|++||||+++|+++.... +.+|+.+++..+..... -..+|.. .....+.
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL------ESELFGYEKGAFTGAVKQTLGKIEYAHGG 235 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH------HHHhcCCCCCCcCCCccCCCCceeECCCC
Confidence 3568999999999999999998776 46899999887632110 0111110 1113356
Q ss_pred EEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--C-------CCCeEEEEecCCCc-------ccchhccCC
Q 007255 386 IIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--Q-------AKGILVLAATNRPH-------AIDAALMRP 449 (611)
Q Consensus 386 il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~-------~~~~~vI~~tn~~~-------~ld~al~r~ 449 (611)
.|||||++.+. ...+..|+..++.-. . ..++.+|++|+..- .+.+.|..
T Consensus 236 tl~l~~i~~l~--------------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~- 300 (445)
T TIGR02915 236 TLFLDEIGDLP--------------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY- 300 (445)
T ss_pred EEEEechhhCC--------------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH-
Confidence 99999999882 456677777775321 1 12577888887652 23333433
Q ss_pred CCccceeecCCCCHHHHHH----HHHHHhcC----CCC----CCcccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007255 450 GRFDLVLYVPPPDLEARHE----ILRVHTRN----MKV----GDDVDLRSIAEETELFTGAELEGLCREAGIVA 511 (611)
Q Consensus 450 gRf~~~i~~~~p~~~~r~~----il~~~~~~----~~~----~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a 511 (611)
|+. .+.+..|...+|.. +++.+++. +.. .++..+..|.....--+-+++++++..|...+
T Consensus 301 -~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 301 -RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred -Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 443 34455566655553 33333322 121 12334566666554336788888888777543
No 452
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.41 E-value=6.9e-06 Score=90.00 Aligned_cols=78 Identities=22% Similarity=0.097 Sum_probs=50.8
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccc--------------------------cc--cch
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM--------------------------YV--GES 368 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~--------------------------~~--g~~ 368 (611)
|++....++++||||+|||+++..++.+. |.+.+.++..+-... +. ...
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56677778999999999999999888654 455555433211100 00 011
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcccccccc
Q 007255 369 EALLRNTFQRARLAAPSIIFFDEADVVGA 397 (611)
Q Consensus 369 ~~~~~~~~~~a~~~~p~il~iDeid~l~~ 397 (611)
+..+..+........+.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 33445555566667889999999988753
No 453
>PRK06921 hypothetical protein; Provisional
Probab=98.40 E-value=1.7e-06 Score=85.83 Aligned_cols=69 Identities=25% Similarity=0.332 Sum_probs=42.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC----GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
...+++|+||||||||+|+.++|+++ +..++.++..++....... .......+.. ..+..+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~------~~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNR------MKKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHH------hcCCCEEEEecccc
Confidence 35789999999999999999999986 4556666654443221100 0011111111 12356999999943
No 454
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.40 E-value=3.7e-06 Score=82.63 Aligned_cols=166 Identities=17% Similarity=0.342 Sum_probs=103.8
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHH---HhCCcEEEEccccccc----
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVR---ECGAHLTVISPHSVHK---- 91 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~---~l~~~~~~v~~~~~~~---- 91 (611)
..+.|..+.-+.+.+++....... ..+.++++||.|+|||+++..... +.|-+++.+.......
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~g---------EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHG---------ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhc---------CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 356788888888888876543322 347999999999999999886543 5666776665432211
Q ss_pred -----------------ccccchHHHHHHHHHHHHhhhhcCC-CeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcC
Q 007255 92 -----------------AHVGESEKALREAFSQASSHALSGK-PSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSN 153 (611)
Q Consensus 92 -----------------~~~~~~~~~l~~~f~~~~~~~~~~~-~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~ 153 (611)
...|.....+..++...+......+ +.|.++||+|..++.. -+..+++++|-.
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~---------rQtllYnlfDis 165 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS---------RQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch---------hhHHHHHHHHHH
Confidence 1123333444444444333322222 3456678999887642 245566777654
Q ss_pred CCCCCCCCcEEEEEeecCcc---cccHHhhccCCcceE-EEccCC-CHHHHHHHHHHhh
Q 007255 154 KPSKTSVPHVVVVASTNRVD---AIDPALRRSGRFDAE-VEVTVP-TAEERFEILKLYT 207 (611)
Q Consensus 154 ~~~~~~~~~v~ii~ttn~~~---~l~~~l~~~~Rf~~~-i~~~~p-~~~~r~~Il~~~~ 207 (611)
..... ++.+|+.|.+.+ .+..++.+ ||.+. |+++++ +..+...+++..+
T Consensus 166 qs~r~---Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 QSARA---PICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred hhcCC---CeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 43322 467777777654 66789998 99865 555544 7778888888765
No 455
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=1.3e-06 Score=77.03 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=60.1
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh--------CCcEEeecchhhccc--------------cc--cchHHHHHHHHHHH
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA--------EASFFSLSGAELYSM--------------YV--GESEALLRNTFQRA 379 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~--------~~~~~~~~~~~~~~~--------------~~--g~~~~~~~~~~~~a 379 (611)
.+.++++||||+|||++++.++... ..+++.++.+..... .. .........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999987 667777766544310 11 12334445555555
Q ss_pred HhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEec
Q 007255 380 RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAAT 436 (611)
Q Consensus 380 ~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t 436 (611)
......+|+|||+|.+. ....++.|...++ ...-.++++|+.
T Consensus 84 ~~~~~~~lviDe~~~l~-------------~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-------------SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-------------THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-------------CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 55555699999999873 1456666655555 233344555443
No 456
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.35 E-value=1.5e-05 Score=83.17 Aligned_cols=215 Identities=15% Similarity=0.236 Sum_probs=115.4
Q ss_pred cccccccc------ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 007255 8 MSEHNEKW------KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL 81 (611)
Q Consensus 8 ~~~~~~~~------~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~ 81 (611)
.....+.| ++++++.=...-+.++++++....... ..-..+-+||+||+||||||.++.+++++|..+
T Consensus 65 ~~d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~------~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 65 KEDEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFT------PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred CccccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhc------cCCCceEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 34455566 666777777777788888876211100 011235789999999999999999999999998
Q ss_pred EEEccc-------ccccccccch------HHHHHHHHHHHHhh--------hhcCCCeEEEEccccccCCCCCCCchhhH
Q 007255 82 TVISPH-------SVHKAHVGES------EKALREAFSQASSH--------ALSGKPSVVFIDEIDALCPRRDHRREQDV 140 (611)
Q Consensus 82 ~~v~~~-------~~~~~~~~~~------~~~l~~~f~~~~~~--------~~~~~~~il~IDeid~l~~~~~~~~~~~~ 140 (611)
+..+.. .+.+...+.. -..+......+..+ .....+.+|+|||+=..+... ..
T Consensus 139 ~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d------~~ 212 (634)
T KOG1970|consen 139 IEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD------DS 212 (634)
T ss_pred eeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh------hH
Confidence 887622 2222111111 11122222222110 012346689999986554421 22
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccc------ccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCC--
Q 007255 141 RIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA------IDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPL-- 212 (611)
Q Consensus 141 ~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~------l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~-- 212 (611)
+.++..+..+-... ..+-|++|.-+...+. ....+.-..|.. .|.|.+-...-+.+.++..+.....
T Consensus 213 ~~f~evL~~y~s~g----~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~ 287 (634)
T KOG1970|consen 213 ETFREVLRLYVSIG----RCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKK 287 (634)
T ss_pred HHHHHHHHHHHhcC----CCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccc
Confidence 33333343333221 1222333333333332 223333334654 7899999988888888877654321
Q ss_pred -----CCcccHHHHHHhccCCccccHHHHHHHHHHH
Q 007255 213 -----DANVDLEAIATSCNGYVGADLEALCREATMS 243 (611)
Q Consensus 213 -----~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~ 243 (611)
.....++.++..+ ++||+..+......
T Consensus 288 s~~k~~~~~~v~~i~~~s----~GDIRsAInsLQls 319 (634)
T KOG1970|consen 288 SGIKVPDTAEVELICQGS----GGDIRSAINSLQLS 319 (634)
T ss_pred cCCcCchhHHHHHHHHhc----CccHHHHHhHhhhh
Confidence 1233355555544 45676665544433
No 457
>PRK09183 transposase/IS protein; Provisional
Probab=98.33 E-value=1.2e-06 Score=86.79 Aligned_cols=88 Identities=22% Similarity=0.331 Sum_probs=52.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccc-hHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGE-SEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~-~~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
...+++|+||||||||+++.+++..+ |..+..++..++....... ....+...+... ...+.+++|||++.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdlg~ 175 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-----VMAPRLLIIDEIGY 175 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-----hcCCCEEEEccccc
Confidence 45689999999999999999997664 5566666655544221100 001122333321 12467999999976
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHhc
Q 007255 128 LCPRRDHRREQDVRIASQLFTLMDS 152 (611)
Q Consensus 128 l~~~~~~~~~~~~~~~~~ll~~l~~ 152 (611)
..... .....|+.+++.
T Consensus 176 ~~~~~--------~~~~~lf~li~~ 192 (259)
T PRK09183 176 LPFSQ--------EEANLFFQVIAK 192 (259)
T ss_pred CCCCh--------HHHHHHHHHHHH
Confidence 53321 233456666654
No 458
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.32 E-value=1.9e-06 Score=93.49 Aligned_cols=131 Identities=18% Similarity=0.299 Sum_probs=80.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccchHHHHHHHHHHHH-----------hhhhcCCC
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQAS-----------SHALSGKP 117 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~-----------~~~~~~~~ 117 (611)
...++++.|++||||+++++++.... +.+++.++|..+..... -..+|.... .......+
T Consensus 165 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 238 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL------ESELFGHEKGAFTGAQTLRQGLFERANE 238 (457)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH------HHHhcCCCCCCCCCCCCCCCCceEECCC
Confidence 34689999999999999999997764 46899999987642110 011111100 00112346
Q ss_pred eEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCCCcEEEEEeecCc-------ccccHHhhccCCc
Q 007255 118 SVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSVPHVVVVASTNRV-------DAIDPALRRSGRF 185 (611)
Q Consensus 118 ~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~~~v~ii~ttn~~-------~~l~~~l~~~~Rf 185 (611)
++|||||++.|.+ ..+..|+..++..... .....++.+|++|+.. ..+.+.+.. |+
T Consensus 239 gtl~ld~i~~l~~----------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l 306 (457)
T PRK11361 239 GTLLLDEIGEMPL----------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RL 306 (457)
T ss_pred CEEEEechhhCCH----------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hh
Confidence 7999999999865 5678888888764211 1112357889988763 133444443 44
Q ss_pred ceEEEccCCCHHHHHH
Q 007255 186 DAEVEVTVPTAEERFE 201 (611)
Q Consensus 186 ~~~i~~~~p~~~~r~~ 201 (611)
. .+.+..|...+|.+
T Consensus 307 ~-~~~i~~ppLreR~~ 321 (457)
T PRK11361 307 N-VIHLILPPLRDRRE 321 (457)
T ss_pred c-cceecCCChhhchh
Confidence 3 35556665555543
No 459
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.31 E-value=4.1e-06 Score=91.65 Aligned_cols=186 Identities=14% Similarity=0.080 Sum_probs=119.7
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhC--CcEEeecchhhccccccchHHHHHHHHHH---------HHhcCCcEEEEcccc
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAE--ASFFSLSGAELYSMYVGESEALLRNTFQR---------ARLAAPSIIFFDEAD 393 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------a~~~~p~il~iDeid 393 (611)
.|+++.|++|+||++++++++..+. .+|+.+..+.-....+|... +...+.. ....+..|||+||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~D--l~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLD--LAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCch--HHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 5899999999999999999999885 48887776655555555431 1111111 011233599999998
Q ss_pred cccccCCCCCCCCcchhHHHHHHHHHHhcCC-----------CCCCCeEEEEecCCC---cccchhccCCCCccceeecC
Q 007255 394 VVGAKRGGSSSTSITVGERLLSTLLTEMDGL-----------EQAKGILVLAATNRP---HAIDAALMRPGRFDLVLYVP 459 (611)
Q Consensus 394 ~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~~tn~~---~~ld~al~r~gRf~~~i~~~ 459 (611)
.+ ...+++.|+..|+.- ..+.++++|++.|.. +.+.++++. ||+..+.++
T Consensus 104 ~~--------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~ 167 (584)
T PRK13406 104 RL--------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLD 167 (584)
T ss_pred cC--------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcC
Confidence 76 367889999988632 123568888864322 348889998 999999999
Q ss_pred CCCHHHHH-------HHHH--HHhcCCCCCCcccHHHHHHhC--CCC-CHHHHHHHHHHHHHHHHHhhcccccccHHHHH
Q 007255 460 PPDLEARH-------EILR--VHTRNMKVGDDVDLRSIAEET--ELF-TGAELEGLCREAGIVALREDISATAVRNRHFQ 527 (611)
Q Consensus 460 ~p~~~~r~-------~il~--~~~~~~~~~~~~~~~~la~~~--~g~-s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~ 527 (611)
.|+..+.. .|.. ..+.+..+ ++..+..++..+ -|. |.+.-..+++-|...|..+. ...++.+|+.
T Consensus 168 ~~~~~~~~~~~~~~~~I~~AR~rl~~v~v-~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~G--r~~V~~~dv~ 244 (584)
T PRK13406 168 GLALRDAREIPIDADDIAAARARLPAVGP-PPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAG--RTAVEEEDLA 244 (584)
T ss_pred CCChHHhcccCCCHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcC--CCCCCHHHHH
Confidence 88765421 2333 22222222 222334443332 254 66777777777777666553 4567888888
Q ss_pred HHHh
Q 007255 528 TVKD 531 (611)
Q Consensus 528 ~~l~ 531 (611)
.++.
T Consensus 245 ~Aa~ 248 (584)
T PRK13406 245 LAAR 248 (584)
T ss_pred HHHH
Confidence 7764
No 460
>PF05729 NACHT: NACHT domain
Probab=98.31 E-value=9.1e-06 Score=74.67 Aligned_cols=143 Identities=17% Similarity=0.265 Sum_probs=74.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC---------cEEEEccccccccccc-chHHHHHHHHHH--------HHhhhhcCC
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGA---------HLTVISPHSVHKAHVG-ESEKALREAFSQ--------ASSHALSGK 116 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~---------~~~~v~~~~~~~~~~~-~~~~~l~~~f~~--------~~~~~~~~~ 116 (611)
-++++|+||+|||++++.++..+.. -.+.++..+....... .....+...+.. .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 5899999999999999999887621 1223333332221110 111111110000 001112345
Q ss_pred CeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcc--cccHHhhccCCcceEEEccCC
Q 007255 117 PSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD--AIDPALRRSGRFDAEVEVTVP 194 (611)
Q Consensus 117 ~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~--~l~~~l~~~~Rf~~~i~~~~p 194 (611)
..+++||.+|.+...... .........+..++.... .+++-++.|+++.. .+...+.. ...+.+++.
T Consensus 82 ~~llilDglDE~~~~~~~--~~~~~~~~~l~~l~~~~~-----~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS--QERQRLLDLLSQLLPQAL-----PPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh--hHHHHHHHHHHHHhhhcc-----CCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCC
Confidence 778999999998764321 111123333444444311 11344555554422 22223322 146899999
Q ss_pred CHHHHHHHHHHhhc
Q 007255 195 TAEERFEILKLYTK 208 (611)
Q Consensus 195 ~~~~r~~Il~~~~~ 208 (611)
+.+++.++++.++.
T Consensus 151 ~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 151 SEEDIKQYLRKYFS 164 (166)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988765
No 461
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.31 E-value=1.4e-06 Score=92.62 Aligned_cols=173 Identities=18% Similarity=0.190 Sum_probs=93.0
Q ss_pred ccCCcHHHHHHHHHHHHhhhhCchHHHhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccc-ccccccccch
Q 007255 20 AIGGNRAAVEALRELITFPLLYSSQAQKLG-LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH-SVHKAHVGES 97 (611)
Q Consensus 20 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g-~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~-~~~~~~~~~~ 97 (611)
+|.|+|++|+-|.-.+-- .........| .+..-||||+|.||||||.+.+++++.+..-.++=... .-.......+
T Consensus 430 sIye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 567777777766433311 1222223333 34457999999999999999999999874433221100 0000000000
Q ss_pred -HHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-------CCCCCcEEEEEee
Q 007255 98 -EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-------KTSVPHVVVVAST 169 (611)
Q Consensus 98 -~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~~~v~ii~tt 169 (611)
+...+++.-+. ........+|..|||+|+|.. ...+-|.+.|+...-+ ..-+.+.-|+|++
T Consensus 508 rd~dtkqlVLes-GALVLSD~GiCCIDEFDKM~d----------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaA 576 (804)
T KOG0478|consen 508 KDPDTRQLVLES-GALVLSDNGICCIDEFDKMSD----------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAA 576 (804)
T ss_pred ecCccceeeeec-CcEEEcCCceEEchhhhhhhH----------HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeee
Confidence 00000110000 001122356999999999844 2234455555542111 1122345789999
Q ss_pred cCcc-------------cccHHhhccCCcceEE-EccCCCHHHHHHHHHHhh
Q 007255 170 NRVD-------------AIDPALRRSGRFDAEV-EVTVPTAEERFEILKLYT 207 (611)
Q Consensus 170 n~~~-------------~l~~~l~~~~Rf~~~i-~~~~p~~~~r~~Il~~~~ 207 (611)
|+.+ .|+|.|++ ||+.++ -++.||...=+.+..+..
T Consensus 577 NP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 577 NPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred ccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHH
Confidence 9743 67899999 998653 567777764455555544
No 462
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.30 E-value=4.8e-07 Score=84.15 Aligned_cols=100 Identities=23% Similarity=0.376 Sum_probs=55.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccch-HHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGES-EKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~-~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
.+.+++|+||||||||++|.++++++ |..+..++..++........ .......+.... +..+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~------~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK------RVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH------TSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc------cccEecccccce
Confidence 45799999999999999999998876 67777777776653321110 011122222222 245999999954
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 007255 128 LCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (611)
Q Consensus 128 l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~ 171 (611)
... .......++.+++..... . ..|.|||.
T Consensus 120 ~~~--------~~~~~~~l~~ii~~R~~~-----~-~tIiTSN~ 149 (178)
T PF01695_consen 120 EPL--------SEWEAELLFEIIDERYER-----K-PTIITSNL 149 (178)
T ss_dssp S-----------HHHHHCTHHHHHHHHHT-------EEEEEESS
T ss_pred eee--------cccccccchhhhhHhhcc-----c-CeEeeCCC
Confidence 321 112344555666543211 1 24557886
No 463
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.30 E-value=3e-06 Score=83.48 Aligned_cols=68 Identities=29% Similarity=0.397 Sum_probs=45.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccccccccccc-----chHHHHHHHHHHHHhhhhcCCCeEEEEc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVG-----ESEKALREAFSQASSHALSGKPSVVFID 123 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~-----~~~~~l~~~f~~~~~~~~~~~~~il~ID 123 (611)
.+.+++|+||||||||+++-++++++ |..+..++..++...... .....+... ..+..+|+||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---------l~~~dlLIiD 174 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---------LKKVDLLIID 174 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---------hhcCCEEEEe
Confidence 45799999999999999999999887 566777777666533211 111111111 1235599999
Q ss_pred ccccc
Q 007255 124 EIDAL 128 (611)
Q Consensus 124 eid~l 128 (611)
|+-..
T Consensus 175 DlG~~ 179 (254)
T COG1484 175 DIGYE 179 (254)
T ss_pred cccCc
Confidence 99654
No 464
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.30 E-value=4e-06 Score=91.03 Aligned_cols=173 Identities=20% Similarity=0.291 Sum_probs=102.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccchHHHHHHHHHHH-----------HhhhhcCCC
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQA-----------SSHALSGKP 117 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~-----------~~~~~~~~~ 117 (611)
...++++.|.+||||+++++++.... +.+++.++|..+..... . ..+|... ........+
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~---~---~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI---E---SELFGHEKGAFTGANTRRQGRFEQADG 229 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH---H---HHhcCCCCCCCCCcccCCCCcEEECCC
Confidence 34689999999999999999998765 46899999987633211 0 0111100 000112346
Q ss_pred eEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCCCcEEEEEeecCc-------ccccHHhhccCCc
Q 007255 118 SVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSVPHVVVVASTNRV-------DAIDPALRRSGRF 185 (611)
Q Consensus 118 ~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~~~v~ii~ttn~~-------~~l~~~l~~~~Rf 185 (611)
+.|||||++.|.. ..+..|+..++..... .....++.+|++|+.. ..+.+.+.. |+
T Consensus 230 gtl~l~ei~~l~~----------~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl 297 (463)
T TIGR01818 230 GTLFLDEIGDMPL----------DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RL 297 (463)
T ss_pred CeEEEEchhhCCH----------HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--Hh
Confidence 7899999998865 5678888888764311 1112356788888753 134455554 55
Q ss_pred c-eEEEccCCC--HHHHHHHHHHhhcCCC----CC-Cccc---HHHHHHhccCCc--cccHHHHHHHHHHHH
Q 007255 186 D-AEVEVTVPT--AEERFEILKLYTKKVP----LD-ANVD---LEAIATSCNGYV--GADLEALCREATMSA 244 (611)
Q Consensus 186 ~-~~i~~~~p~--~~~r~~Il~~~~~~~~----~~-~~~~---~~~la~~~~g~~--~~dl~~l~~~a~~~a 244 (611)
. ..|++|+.. .++...++++++.... .. .... +..+... ++. -++|++++..++..+
T Consensus 298 ~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 298 NVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL--RWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred CcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--CCCChHHHHHHHHHHHHHhC
Confidence 3 366777765 4566667766654321 11 1111 2333322 343 477888888877554
No 465
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.28 E-value=2.1e-06 Score=102.05 Aligned_cols=140 Identities=24% Similarity=0.348 Sum_probs=89.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc--cccc----chHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK--AHVG----ESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~--~~~~----~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
.++||.||.|+|||.++..+|+..|.+++.++-++..+ .+.| ..... -.|+........-+++++++|+++.
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~--l~freg~LV~Alr~G~~~vlD~lnl 518 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGD--LVFREGVLVQALRNGDWIVLDELNL 518 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCC--eeeehhHHHHHHHhCCEEEeccccc
Confidence 58999999999999999999999999999987654321 1111 00000 0111111111122478999999975
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHhcCCCC--------CCCCCcEEEEEeecCccc------ccHHhhccCCcceEEEccC
Q 007255 128 LCPRRDHRREQDVRIASQLFTLMDSNKPS--------KTSVPHVVVVASTNRVDA------IDPALRRSGRFDAEVEVTV 193 (611)
Q Consensus 128 l~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~~v~ii~ttn~~~~------l~~~l~~~~Rf~~~i~~~~ 193 (611)
... .++..|.++++.+..- ....+.+++++|-|++.. +..+++. ||. .++|..
T Consensus 519 a~~----------dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~--rf~-e~~f~~ 585 (1856)
T KOG1808|consen 519 APH----------DVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRN--RFI-ELHFDD 585 (1856)
T ss_pred cch----------HHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccc--cch-hhhhhh
Confidence 533 5677777777763322 223456778888888753 3455555 764 677777
Q ss_pred CCHHHHHHHHHHhhc
Q 007255 194 PTAEERFEILKLYTK 208 (611)
Q Consensus 194 p~~~~r~~Il~~~~~ 208 (611)
-..++...|+.+.+.
T Consensus 586 ~~e~e~~~i~~~~~~ 600 (1856)
T KOG1808|consen 586 IGEEELEEILEHRCG 600 (1856)
T ss_pred cCchhhhhhhccccc
Confidence 777787778776554
No 466
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.28 E-value=1.5e-06 Score=76.62 Aligned_cols=87 Identities=25% Similarity=0.407 Sum_probs=49.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEccccccc--------------cccc-chHHHHHHHHHHHH
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC--------GAHLTVISPHSVHK--------------AHVG-ESEKALREAFSQAS 109 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l--------~~~~~~v~~~~~~~--------------~~~~-~~~~~l~~~f~~~~ 109 (611)
...++++||||+|||++++.+++.+ ..+++.+++..... .... .....+.+.+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4689999999999999999999987 66677766543220 0011 11222222222222
Q ss_pred hhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHh
Q 007255 110 SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (611)
Q Consensus 110 ~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 151 (611)
.. ....+|+|||+|.+. . ......|..+++
T Consensus 84 ~~---~~~~~lviDe~~~l~-~--------~~~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DR---RRVVLLVIDEADHLF-S--------DEFLEFLRSLLN 113 (131)
T ss_dssp HH---CTEEEEEEETTHHHH-T--------HHHHHHHHHHTC
T ss_pred Hh---cCCeEEEEeChHhcC-C--------HHHHHHHHHHHh
Confidence 21 223599999999874 1 255566655555
No 467
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.27 E-value=2.7e-05 Score=77.12 Aligned_cols=155 Identities=21% Similarity=0.306 Sum_probs=97.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKA 92 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~ 92 (611)
..|+.++|.....+.+.+.-.. +. ....++|+.|.+||||-.+|+++.... ..+|+.+||..+...
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k----------~A-mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~ 269 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQK----------LA-MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPED 269 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHH----------hh-ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchh
Confidence 4566677776666665443211 11 123689999999999999999986544 678999999876532
Q ss_pred c-----ccch--HHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCC-----CC
Q 007255 93 H-----VGES--EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKT-----SV 160 (611)
Q Consensus 93 ~-----~~~~--~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-----~~ 160 (611)
. +|.. ......+|+.+. ++-+|+|||..|.+ +++..|+.++.+...... ..
T Consensus 270 ~aEsElFG~apg~~gk~GffE~An-------gGTVlLDeIgEmSp----------~lQaKLLRFL~DGtFRRVGee~Ev~ 332 (511)
T COG3283 270 AAESELFGHAPGDEGKKGFFEQAN-------GGTVLLDEIGEMSP----------RLQAKLLRFLNDGTFRRVGEDHEVH 332 (511)
T ss_pred HhHHHHhcCCCCCCCccchhhhcc-------CCeEEeehhhhcCH----------HHHHHHHHHhcCCceeecCCcceEE
Confidence 1 1111 122345566554 56899999976654 889999999987543222 12
Q ss_pred CcEEEEEeecCc-------ccccHHhhccCCcceEEEccCCCHHHHHH
Q 007255 161 PHVVVVASTNRV-------DAIDPALRRSGRFDAEVEVTVPTAEERFE 201 (611)
Q Consensus 161 ~~v~ii~ttn~~-------~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~ 201 (611)
-+|.||++|..+ ..+.+.+.- |.. ++.+..|...+|.+
T Consensus 333 vdVRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl~~PpLRer~~ 377 (511)
T COG3283 333 VDVRVICATQVNLVELVQKGKFREDLFY--RLN-VLTLNLPPLRERPQ 377 (511)
T ss_pred EEEEEEecccccHHHHHhcCchHHHHHH--Hhh-eeeecCCccccCcc
Confidence 468899998763 133444433 553 55666665555443
No 468
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.25 E-value=1.3e-05 Score=87.85 Aligned_cols=132 Identities=15% Similarity=0.186 Sum_probs=90.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEcccccccccccchHHHHHHHHHHHHh-----hhhcCCCeEEEEcccc
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGA--HLTVISPHSVHKAHVGESEKALREAFSQASS-----HALSGKPSVVFIDEID 126 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~-----~~~~~~~~il~IDeid 126 (611)
.+++|.|+.|||||+++++++..+.. +|+.+..+.......|..+ +...+..... .....+.+|||+||++
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~D--l~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLD--LAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCch--HHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 58999999999999999999999864 7776665544433333211 1111111110 0012245799999998
Q ss_pred ccCCCCCCCchhhHHHHHHHHHHHhcCC-------CCCCCCCcEEEEEeecCc---ccccHHhhccCCcceEEEccCCCH
Q 007255 127 ALCPRRDHRREQDVRIASQLFTLMDSNK-------PSKTSVPHVVVVASTNRV---DAIDPALRRSGRFDAEVEVTVPTA 196 (611)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~~~v~ii~ttn~~---~~l~~~l~~~~Rf~~~i~~~~p~~ 196 (611)
.+.+ .++..|+..|+... .+...+.++++|++.|.. ..+++.+.. ||+..+.++.|+.
T Consensus 104 ~~~~----------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~ 171 (584)
T PRK13406 104 RLEP----------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLAL 171 (584)
T ss_pred cCCH----------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCCh
Confidence 7755 78999999998742 222345678999985543 368999998 9999999998876
Q ss_pred HHH
Q 007255 197 EER 199 (611)
Q Consensus 197 ~~r 199 (611)
.+.
T Consensus 172 ~~~ 174 (584)
T PRK13406 172 RDA 174 (584)
T ss_pred HHh
Confidence 643
No 469
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.23 E-value=1.2e-05 Score=87.45 Aligned_cols=200 Identities=18% Similarity=0.193 Sum_probs=113.5
Q ss_pred ccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhcccccc
Q 007255 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVG 366 (611)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g 366 (611)
.+++|.....+.+.+.+.. -......+++.|++|||||++|+++.... +.+|+.++++.+...
T Consensus 138 ~~lig~s~~~~~l~~~~~~-----------~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~--- 203 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGR-----------LSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD--- 203 (469)
T ss_pred ccceecCHHHHHHHHHHHH-----------HhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH---
Confidence 3566665555555444432 01233469999999999999999999876 578999999776321
Q ss_pred chHHHHHHHHHH---------------HHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--C---
Q 007255 367 ESEALLRNTFQR---------------ARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--Q--- 426 (611)
Q Consensus 367 ~~~~~~~~~~~~---------------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~--- 426 (611)
..-..+|.. .....+..+||||++.+. ...+..|+..++... .
T Consensus 204 ---~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~--------------~~~q~~L~~~l~~~~~~~~~~ 266 (469)
T PRK10923 204 ---LIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP--------------LDVQTRLLRVLADGQFYRVGG 266 (469)
T ss_pred ---HHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC--------------HHHHHHHHHHHhcCcEEeCCC
Confidence 111112211 111234589999999872 455677777775321 0
Q ss_pred ----CCCeEEEEecCCCc-------ccchhccCCCCcc-ceeecCCCCH--HHHHHHHHHHhcC----CCC----CCccc
Q 007255 427 ----AKGILVLAATNRPH-------AIDAALMRPGRFD-LVLYVPPPDL--EARHEILRVHTRN----MKV----GDDVD 484 (611)
Q Consensus 427 ----~~~~~vI~~tn~~~-------~ld~al~r~gRf~-~~i~~~~p~~--~~r~~il~~~~~~----~~~----~~~~~ 484 (611)
.-++.+|+||+..- .+.+.|.. |+. ..|.+|+... ++...+++.+++. ... .++..
T Consensus 267 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a 344 (469)
T PRK10923 267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPET 344 (469)
T ss_pred CCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 12467888887532 24445554 663 4555544322 3333455444322 111 12334
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHH
Q 007255 485 LRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQ 527 (611)
Q Consensus 485 ~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~ 527 (611)
+..|.....--+-++++++++.+...+- ...|+..|+.
T Consensus 345 ~~~L~~~~wpgNv~eL~~~i~~~~~~~~-----~~~i~~~~l~ 382 (469)
T PRK10923 345 EAALTRLAWPGNVRQLENTCRWLTVMAA-----GQEVLIQDLP 382 (469)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhCC-----CCcccHHHCc
Confidence 5666665553467888998887766442 2235555553
No 470
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.22 E-value=1e-05 Score=78.48 Aligned_cols=137 Identities=17% Similarity=0.177 Sum_probs=80.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEccccccccc
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG-----AHLTVISPHSVHKAH 93 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~-----~~~~~v~~~~~~~~~ 93 (611)
..+.||.-+++.+...+...+..+. -++|.-+=|+|++||||+++++.+|+.+- .+++..-..+..-..
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 4578998899988888876544432 24567788999999999999999999873 222221111111011
Q ss_pred ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC-CCCCcEEEEEeecC
Q 007255 94 VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK-TSVPHVVVVASTNR 171 (611)
Q Consensus 94 ~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~~~v~ii~ttn~ 171 (611)
....+..-.++-.+.......++.+++++||+|.|.+ .++..+--.+|...... ..-.+.++|.-+|.
T Consensus 156 ~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~----------gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~ 224 (344)
T KOG2170|consen 156 ASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP----------GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNA 224 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH----------hHHHHHhhhhccccccccccccceEEEEEcCC
Confidence 1111111222233333333456778999999999966 56777777777533221 12224455555554
No 471
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.21 E-value=4.4e-06 Score=90.77 Aligned_cols=185 Identities=19% Similarity=0.208 Sum_probs=102.7
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccc-----c----chHHHHHHHHHHHHhcCCcEEEEccc
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYV-----G----ESEALLRNTFQRARLAAPSIIFFDEA 392 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~-----g----~~~~~~~~~~~~a~~~~p~il~iDei 392 (611)
..+++.|++||||+++|+++.... +.+|+.+++..+..... | .................+..|||||+
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei 237 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEI 237 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEch
Confidence 468999999999999999998775 56899999876632110 0 00000000000011223569999999
Q ss_pred ccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--C-------CCCeEEEEecCCCc-------ccchhccCCCCcc-ce
Q 007255 393 DVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--Q-------AKGILVLAATNRPH-------AIDAALMRPGRFD-LV 455 (611)
Q Consensus 393 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~-------~~~~~vI~~tn~~~-------~ld~al~r~gRf~-~~ 455 (611)
+.+. ......|+..++.-. . .-.+.+|++|+..- .+.+.|.. |+. ..
T Consensus 238 ~~l~--------------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~ 301 (463)
T TIGR01818 238 GDMP--------------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIR 301 (463)
T ss_pred hhCC--------------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcce
Confidence 9872 345667777665321 0 11467887877542 23334443 444 35
Q ss_pred eecCCCC--HHHHHHHHHHHhcCC----C----CCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHH
Q 007255 456 LYVPPPD--LEARHEILRVHTRNM----K----VGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRH 525 (611)
Q Consensus 456 i~~~~p~--~~~r~~il~~~~~~~----~----~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~ 525 (611)
|.+|+.. .++...+++.+++.+ . ..++..+..|.....--+-+++++++..+...+.. ..|+..|
T Consensus 302 i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~-----~~i~~~~ 376 (463)
T TIGR01818 302 IHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASG-----DEVLVSD 376 (463)
T ss_pred ecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC-----CcccHHh
Confidence 6665544 345555555443322 1 11233355555554322568888888887765532 2355555
Q ss_pred HHHHH
Q 007255 526 FQTVK 530 (611)
Q Consensus 526 ~~~~l 530 (611)
+...+
T Consensus 377 l~~~~ 381 (463)
T TIGR01818 377 LPAEL 381 (463)
T ss_pred chHHH
Confidence 54333
No 472
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.21 E-value=1.3e-06 Score=89.74 Aligned_cols=167 Identities=22% Similarity=0.242 Sum_probs=85.8
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHH---hcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccc----cc-
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQ---KLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS----VH- 90 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~---~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~----~~- 90 (611)
..|.|.+.+|..+.-.+ ....... ....+..-|+||+|.||||||.+.+.+++......+.-..+. +.
T Consensus 24 P~i~g~~~iK~aill~L----~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta 99 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQL----FGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTA 99 (331)
T ss_dssp STTTT-HHHHHHHCCCC----TT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCE
T ss_pred CcCcCcHHHHHHHHHHH----HhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccc
Confidence 35889888877663322 2111100 011234579999999999999999988665544333221111 11
Q ss_pred ----cccccchHHHHH-HHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC-------C
Q 007255 91 ----KAHVGESEKALR-EAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK-------T 158 (611)
Q Consensus 91 ----~~~~~~~~~~l~-~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~ 158 (611)
+...++ ..+. ..+- ...++|++|||+|.+-. .....|++.|+...-+. +
T Consensus 100 ~~~~d~~~~~--~~leaGalv-------lad~GiccIDe~dk~~~----------~~~~~l~eaMEqq~isi~kagi~~~ 160 (331)
T PF00493_consen 100 SVSRDPVTGE--WVLEAGALV-------LADGGICCIDEFDKMKE----------DDRDALHEAMEQQTISIAKAGIVTT 160 (331)
T ss_dssp EECCCGGTSS--ECEEE-HHH-------HCTTSEEEECTTTT--C----------HHHHHHHHHHHCSCEEECTSSSEEE
T ss_pred eeccccccce--eEEeCCchh-------cccCceeeecccccccc----------hHHHHHHHHHHcCeeccchhhhccc
Confidence 000111 0000 0111 12467999999998854 44678888998743211 1
Q ss_pred CCCcEEEEEeecCcc-------------cccHHhhccCCcceEEEc-cCCCHHHHHHHHHHhhcCC
Q 007255 159 SVPHVVVVASTNRVD-------------AIDPALRRSGRFDAEVEV-TVPTAEERFEILKLYTKKV 210 (611)
Q Consensus 159 ~~~~v~ii~ttn~~~-------------~l~~~l~~~~Rf~~~i~~-~~p~~~~r~~Il~~~~~~~ 210 (611)
.+.+..|++++|+.. .+++.+.+ ||+..+.+ +.|+.+.-..+.++.+...
T Consensus 161 l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 161 LNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred ccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 234578999999865 46788888 99976554 6677666666666665543
No 473
>PRK15115 response regulator GlrR; Provisional
Probab=98.19 E-value=1.4e-05 Score=86.40 Aligned_cols=173 Identities=18% Similarity=0.250 Sum_probs=98.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccchHHHHHHHHHHHHh-----------hhhcCCC
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQASS-----------HALSGKP 117 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~-----------~~~~~~~ 117 (611)
...+++++|++|||||++|+++.+.. +.+++.++|..+..... -..+|..... ......+
T Consensus 156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (444)
T PRK15115 156 SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEG 229 (444)
T ss_pred CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCC
Confidence 34689999999999999999998775 46899999987632211 0112211100 1112346
Q ss_pred eEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCCCcEEEEEeecCcccccHHhhccCCcc------
Q 007255 118 SVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSVPHVVVVASTNRVDAIDPALRRSGRFD------ 186 (611)
Q Consensus 118 ~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~------ 186 (611)
+.|||||+|.|.+ ..+..|+..++..... .....++.+|++|+.. +...+. .++|.
T Consensus 230 gtl~l~~i~~l~~----------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~-~~~f~~~l~~~ 296 (444)
T PRK15115 230 GTLFLDEIGDMPA----------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMA-RGEFREDLYYR 296 (444)
T ss_pred CEEEEEccccCCH----------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHH-cCCccHHHHHh
Confidence 7999999999865 6678888888764321 1112357888888752 333332 22331
Q ss_pred -eEEEccCCCHHHHHH----HHHHhhcCC----CCC----CcccHHHHHHhccCCccccHHHHHHHHHHH
Q 007255 187 -AEVEVTVPTAEERFE----ILKLYTKKV----PLD----ANVDLEAIATSCNGYVGADLEALCREATMS 243 (611)
Q Consensus 187 -~~i~~~~p~~~~r~~----Il~~~~~~~----~~~----~~~~~~~la~~~~g~~~~dl~~l~~~a~~~ 243 (611)
..+.+..|...+|.+ ++++++... ... ...-+..+....=..+.+++++++..++..
T Consensus 297 l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred hceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 245566666666643 444444322 111 111133333322123456777777777643
No 474
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.17 E-value=8.8e-06 Score=86.09 Aligned_cols=165 Identities=16% Similarity=0.195 Sum_probs=98.6
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhCchHHH----hcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccc-ccc--
Q 007255 18 EEAIGGNRAAVEALRELITFPLLYSSQAQ----KLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH-SVH-- 90 (611)
Q Consensus 18 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~----~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~-~~~-- 90 (611)
+..|.|.+.+|.-|.-.+- .+... ...++-..|++++|.||||||-+.++++..+...+++-... +-.
T Consensus 344 ~PsIyGhe~VK~GilL~Lf-----GGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLF-----GGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGL 418 (764)
T ss_pred CccccchHHHHhhHHHHHh-----CCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccc
Confidence 4567788888776654331 11111 22334457999999999999999999998876554432211 110
Q ss_pred ------cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCC------
Q 007255 91 ------KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKT------ 158 (611)
Q Consensus 91 ------~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~------ 158 (611)
+...|+. .++ |- .......+|..|||+|.|-- .-+.++.+.|+...-+..
T Consensus 419 TaaVvkD~esgdf------~iE-AG-ALmLADnGICCIDEFDKMd~----------~dqvAihEAMEQQtISIaKAGv~a 480 (764)
T KOG0480|consen 419 TAAVVKDEESGDF------TIE-AG-ALMLADNGICCIDEFDKMDV----------KDQVAIHEAMEQQTISIAKAGVVA 480 (764)
T ss_pred eEEEEecCCCCce------eee-cC-cEEEccCceEEechhcccCh----------HhHHHHHHHHHhheehheecceEE
Confidence 1111110 011 00 01123456999999999843 236778888876432221
Q ss_pred -CCCcEEEEEeecCcc-------------cccHHhhccCCcceE-EEccCCCHHHHHHHHHHhh
Q 007255 159 -SVPHVVVVASTNRVD-------------AIDPALRRSGRFDAE-VEVTVPTAEERFEILKLYT 207 (611)
Q Consensus 159 -~~~~v~ii~ttn~~~-------------~l~~~l~~~~Rf~~~-i~~~~p~~~~r~~Il~~~~ 207 (611)
.+.+.-|+|++|+.. .+++++.+ ||+.. |-++.|++..=..|-++.+
T Consensus 481 TLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 481 TLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHIL 542 (764)
T ss_pred eecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHH
Confidence 122345788888853 66899998 99854 4667787776666665554
No 475
>PRK06851 hypothetical protein; Provisional
Probab=98.17 E-value=3.4e-05 Score=79.27 Aligned_cols=34 Identities=29% Similarity=0.325 Sum_probs=27.1
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh---CCcEEeecch
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGA 358 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~ 358 (611)
+-++|.|+||||||++++.++.++ |..+....++
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 458999999999999999999877 5555554443
No 476
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.17 E-value=1.3e-05 Score=86.97 Aligned_cols=176 Identities=20% Similarity=0.230 Sum_probs=100.0
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccchHHHHHHHHH---------------HHHhcCCcE
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQ---------------RARLAAPSI 386 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---------------~a~~~~p~i 386 (611)
..++++|++||||+++|+++.... +.+|+.+++..+.... .-..+|. ........+
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 240 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL------LESELFGHEKGAFTGAQTLRQGLFERANEGT 240 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH------HHHHhcCCCCCCCCCCCCCCCCceEECCCCE
Confidence 469999999999999999998765 5789999987763211 0011111 011123459
Q ss_pred EEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--C-------CCCeEEEEecCCCc-------ccchhccCCC
Q 007255 387 IFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--Q-------AKGILVLAATNRPH-------AIDAALMRPG 450 (611)
Q Consensus 387 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~-------~~~~~vI~~tn~~~-------~ld~al~r~g 450 (611)
|||||++.+. ......|+..++... . ..++.+|+||+..- .+.+.+..
T Consensus 241 l~ld~i~~l~--------------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~-- 304 (457)
T PRK11361 241 LLLDEIGEMP--------------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY-- 304 (457)
T ss_pred EEEechhhCC--------------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--
Confidence 9999999882 345677777775321 0 12478888888642 12222332
Q ss_pred CccceeecCCCCHHHHHH----HHHHHhcCC----CC----CCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccc
Q 007255 451 RFDLVLYVPPPDLEARHE----ILRVHTRNM----KV----GDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISA 518 (611)
Q Consensus 451 Rf~~~i~~~~p~~~~r~~----il~~~~~~~----~~----~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~ 518 (611)
|+. .+.+..|...+|.. +++.++.++ .. .++..+..|.....--+-+++++++..+...+- .
T Consensus 305 ~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~-----~ 378 (457)
T PRK11361 305 RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNS-----G 378 (457)
T ss_pred Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCC-----C
Confidence 332 34455566655542 333333221 11 123334555555543367888888887665432 2
Q ss_pred ccccHHHHHH
Q 007255 519 TAVRNRHFQT 528 (611)
Q Consensus 519 ~~i~~~~~~~ 528 (611)
..|+..|+..
T Consensus 379 ~~i~~~~l~~ 388 (457)
T PRK11361 379 PIIFSEDLPP 388 (457)
T ss_pred CcccHHHChH
Confidence 2355555543
No 477
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.15 E-value=5.7e-05 Score=79.06 Aligned_cols=175 Identities=14% Similarity=0.184 Sum_probs=93.1
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCcEEeec-chh------hccc------cccchHHHHHHHHHHHH----------
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS-GAE------LYSM------YVGESEALLRNTFQRAR---------- 380 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~-~~~------~~~~------~~g~~~~~~~~~~~~a~---------- 380 (611)
.+-+||+||+|||||+.++.+|.++|..+++-+ +-. +-.. +....-..+......+.
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~ 189 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGD 189 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhccc
Confidence 345889999999999999999999998877544 211 1110 11111112222222231
Q ss_pred --hcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEec-CCCcccchhccCC------CC
Q 007255 381 --LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAAT-NRPHAIDAALMRP------GR 451 (611)
Q Consensus 381 --~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t-n~~~~ld~al~r~------gR 451 (611)
...+.+|+|||+-..+.. + ..+.+...|.++-...... +++|.|- ..++..++..+++ .|
T Consensus 190 ~~~~~~~liLveDLPn~~~~---------d-~~~~f~evL~~y~s~g~~P-lIf~iTd~~~~g~nnq~rlf~~d~q~~~r 258 (634)
T KOG1970|consen 190 DLRTDKKLILVEDLPNQFYR---------D-DSETFREVLRLYVSIGRCP-LIFIITDSLSNGNNNQDRLFPKDIQEEPR 258 (634)
T ss_pred ccccCceEEEeeccchhhhh---------h-hHHHHHHHHHHHHhcCCCc-EEEEEeccccCCCcchhhhchhhhhhccC
Confidence 123558999999766533 1 1233333343332212222 3333332 2334333322221 25
Q ss_pred ccceeecCCCCHHHHHHHHHHHhcCCCC-------CCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007255 452 FDLVLYVPPPDLEARHEILRVHTRNMKV-------GDDVDLRSIAEETELFTGAELEGLCREAGIVALRE 514 (611)
Q Consensus 452 f~~~i~~~~p~~~~r~~il~~~~~~~~~-------~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~ 514 (611)
+. .|-|.+-...-.++-|+.++..... .....++.++.. +++||+.++......+...
T Consensus 259 i~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~----s~GDIRsAInsLQlssskg 323 (634)
T KOG1970|consen 259 IS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG----SGGDIRSAINSLQLSSSKG 323 (634)
T ss_pred cc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh----cCccHHHHHhHhhhhcccC
Confidence 55 6777777777777777755433222 223334555554 4559999988877775443
No 478
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.14 E-value=4.2e-06 Score=84.70 Aligned_cols=71 Identities=25% Similarity=0.409 Sum_probs=45.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccch-HHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGES-EKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~-~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
..++++|+||+|||||+|+.++|+++ |..+..++..++........ ...+...++.. .+..+|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l------~~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV------KEAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh------cCCCEEEEecCCC
Confidence 45799999999999999999999988 56666666665543221100 00122222222 2356999999964
Q ss_pred c
Q 007255 128 L 128 (611)
Q Consensus 128 l 128 (611)
-
T Consensus 229 e 229 (306)
T PRK08939 229 E 229 (306)
T ss_pred c
Confidence 3
No 479
>PRK15115 response regulator GlrR; Provisional
Probab=98.13 E-value=2.2e-05 Score=84.82 Aligned_cols=177 Identities=19% Similarity=0.251 Sum_probs=103.6
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccchHHHHHHHHHH---------------HHhcCCcE
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQR---------------ARLAAPSI 386 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------a~~~~p~i 386 (611)
..++++|++|||||++|+++.... +.+|+.+++..+.... .-..+|.. ........
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL------LESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH------HHHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 358999999999999999998875 5789999987763211 11112211 11123459
Q ss_pred EEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCC---------CCCeEEEEecCCCcccchhccCCCCccc---
Q 007255 387 IFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ---------AKGILVLAATNRPHAIDAALMRPGRFDL--- 454 (611)
Q Consensus 387 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------~~~~~vI~~tn~~~~ld~al~r~gRf~~--- 454 (611)
|||||+|.+. ......|+..++.-.- ..++.+|+||+.+ ++..+.+ |+|..
T Consensus 232 l~l~~i~~l~--------------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~ 294 (444)
T PRK15115 232 LFLDEIGDMP--------------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLY 294 (444)
T ss_pred EEEEccccCC--------------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHH
Confidence 9999999882 4456777777753210 1257888888753 3333322 34421
Q ss_pred ----eeecCCCCHHHHHH----HHHHHhcC----CCC----CCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccc
Q 007255 455 ----VLYVPPPDLEARHE----ILRVHTRN----MKV----GDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISA 518 (611)
Q Consensus 455 ----~i~~~~p~~~~r~~----il~~~~~~----~~~----~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~ 518 (611)
.+.+..|...+|.+ +++.+++. ... .++..+..|.....--+-++++++++.+...+- .
T Consensus 295 ~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~-----~ 369 (444)
T PRK15115 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTS-----S 369 (444)
T ss_pred HhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC-----C
Confidence 34455566666642 33333322 111 234446677776643477888888887765432 2
Q ss_pred ccccHHHHHHH
Q 007255 519 TAVRNRHFQTV 529 (611)
Q Consensus 519 ~~i~~~~~~~~ 529 (611)
..|+..++...
T Consensus 370 ~~i~~~~l~~~ 380 (444)
T PRK15115 370 PVISDALVEQA 380 (444)
T ss_pred CccChhhhhhh
Confidence 33555555433
No 480
>PF14516 AAA_35: AAA-like domain
Probab=98.11 E-value=0.00017 Score=74.26 Aligned_cols=170 Identities=20% Similarity=0.163 Sum_probs=98.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccchH------------------------------
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESE------------------------------ 98 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~~------------------------------ 98 (611)
+...+.+.||..+|||++...+.+.+ +...+.++...+........+
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 45789999999999999999987665 667777777654332111111
Q ss_pred -HHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEe-ecCccccc
Q 007255 99 -KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS-TNRVDAID 176 (611)
Q Consensus 99 -~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~t-tn~~~~l~ 176 (611)
......|++.. .....+|.||+|||+|.++... .....+...|..+.+........ ..+.++.+ ++......
T Consensus 110 ~~~~~~~~~~~l-l~~~~~~lVL~iDEiD~l~~~~----~~~~dF~~~LR~~~~~~~~~~~~-~~L~li~~~~t~~~~~~ 183 (331)
T PF14516_consen 110 KISCTEYFEEYL-LKQIDKPLVLFIDEIDRLFEYP----QIADDFFGLLRSWYEQRKNNPIW-QKLRLILAGSTEDYIIL 183 (331)
T ss_pred hhhHHHHHHHHH-HhcCCCCEEEEEechhhhccCc----chHHHHHHHHHHHHHhcccCccc-ceEEEEEecCccccccc
Confidence 11122222211 1112478999999999997632 12234555555555543321111 12333332 22222222
Q ss_pred HHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCcc
Q 007255 177 PALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVG 230 (611)
Q Consensus 177 ~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~ 230 (611)
..-.+|..+...+.++..+.++...+++.+-... ... .++.+-..+.|...
T Consensus 184 ~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--~~~-~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 184 DINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--SQE-QLEQLMDWTGGHPY 234 (331)
T ss_pred CCCCCCcccccceeCCCCCHHHHHHHHHhhhccC--CHH-HHHHHHHHHCCCHH
Confidence 2224555566789999999999999888764332 222 38888888888643
No 481
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.09 E-value=6.6e-06 Score=69.77 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=21.3
Q ss_pred cceeCCCCCChHHHHHHHHHHhCC
Q 007255 327 ALLHGPPGCSKTTLAKAAAHAAEA 350 (611)
Q Consensus 327 ~Ll~Gp~G~GKT~la~ala~~~~~ 350 (611)
+.|+||||+|||++|+.+|..+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999988753
No 482
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.09 E-value=1.1e-05 Score=73.86 Aligned_cols=110 Identities=20% Similarity=0.183 Sum_probs=60.5
Q ss_pred cceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhcc----------------------ccccc--hHHHHHHHHHHH
Q 007255 327 ALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYS----------------------MYVGE--SEALLRNTFQRA 379 (611)
Q Consensus 327 ~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~----------------------~~~g~--~~~~~~~~~~~a 379 (611)
++++||||+|||+++..++... +.+++.++...... .+... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 45555554432221 01111 111222334555
Q ss_pred HhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCc
Q 007255 380 RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPH 440 (611)
Q Consensus 380 ~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 440 (611)
....|.+++|||+..+................+.+..+...+ ...++.+|++++.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA----RKGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----hcCCceEEEEEecCC
Confidence 667788999999998864321000011112223344444443 223555666666554
No 483
>PHA00729 NTP-binding motif containing protein
Probab=98.09 E-value=9.2e-06 Score=77.37 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGAH 80 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~~ 80 (611)
.+++++|+||||||++|.++++.++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 489999999999999999999998633
No 484
>PF05729 NACHT: NACHT domain
Probab=98.08 E-value=4.1e-05 Score=70.31 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=71.6
Q ss_pred CcceeCCCCCChHHHHHHHHHHhC---------CcEEeecchhhcccc------------ccchHHHHHH-HHHHHHhcC
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAE---------ASFFSLSGAELYSMY------------VGESEALLRN-TFQRARLAA 383 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~---------~~~~~~~~~~~~~~~------------~g~~~~~~~~-~~~~a~~~~ 383 (611)
-++++|+||+|||++++.++..+. .-++.+...+....- .......+.. .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 378999999999999999998761 112333333322210 0001111111 112233445
Q ss_pred CcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCc--ccchhccCCCCccceeecCCC
Q 007255 384 PSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPH--AIDAALMRPGRFDLVLYVPPP 461 (611)
Q Consensus 384 p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~--~ld~al~r~gRf~~~i~~~~p 461 (611)
+.+++||.+|.+...... .........+...+.. ....++-+|.|++... .+...+.. . ..+.++..
T Consensus 82 ~~llilDglDE~~~~~~~------~~~~~~~~~l~~l~~~-~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS------QERQRLLDLLSQLLPQ-ALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh------hHHHHHHHHHHHHhhh-ccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCC
Confidence 669999999998643211 0111222222233332 1123333443433222 22222222 1 47888888
Q ss_pred CHHHHHHHHHHHhcC
Q 007255 462 DLEARHEILRVHTRN 476 (611)
Q Consensus 462 ~~~~r~~il~~~~~~ 476 (611)
+.+++.++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999877653
No 485
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.06 E-value=6.6e-05 Score=75.92 Aligned_cols=167 Identities=19% Similarity=0.243 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHH--hCCc---EEEEcccccc---------
Q 007255 25 RAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRE--CGAH---LTVISPHSVH--------- 90 (611)
Q Consensus 25 ~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~--l~~~---~~~v~~~~~~--------- 90 (611)
+..+++|.+.+... ......+.++|++|+|||++|..+++. .... .+.++.+.-.
T Consensus 2 e~~~~~l~~~L~~~-----------~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDN-----------SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTT-----------TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCC-----------CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 45667777666431 135578999999999999999999977 4322 2223322110
Q ss_pred -----cc-----cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCC
Q 007255 91 -----KA-----HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSV 160 (611)
Q Consensus 91 -----~~-----~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 160 (611)
.. ....... ....+... ...++++|++||++.. .....+...+....
T Consensus 71 ~~~l~~~~~~~~~~~~~~~-~~~~l~~~----L~~~~~LlVlDdv~~~------------~~~~~l~~~~~~~~------ 127 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEE-LQDQLREL----LKDKRCLLVLDDVWDE------------EDLEELREPLPSFS------ 127 (287)
T ss_dssp HHHHTCC-STSSCCSSHHH-HHHHHHHH----HCCTSEEEEEEEE-SH------------HHH-------HCHH------
T ss_pred ccccccccccccccccccc-ccccchhh----hccccceeeeeeeccc------------cccccccccccccc------
Confidence 00 0011111 22222221 2345899999998643 11222222222111
Q ss_pred CcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCC----CCCcccHHHHHHhccCCc
Q 007255 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVP----LDANVDLEAIATSCNGYV 229 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~----~~~~~~~~~la~~~~g~~ 229 (611)
.+..+|.||.... +-..... . ...+.++..+.++-.+++........ .......+.++..|.|..
T Consensus 128 ~~~kilvTTR~~~-v~~~~~~--~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 196 (287)
T PF00931_consen 128 SGSKILVTTRDRS-VAGSLGG--T-DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLP 196 (287)
T ss_dssp SS-EEEEEESCGG-GGTTHHS--C-EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-H
T ss_pred ccccccccccccc-ccccccc--c-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1245666666532 3222221 1 35799999999999999998865433 112234678888888753
No 486
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00024 Score=67.84 Aligned_cols=177 Identities=20% Similarity=0.214 Sum_probs=103.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEccccccccc---------ccchHHHHH--------HHHHHHHhhhh
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGAH---LTVISPHSVHKAH---------VGESEKALR--------EAFSQASSHAL 113 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~~---~~~v~~~~~~~~~---------~~~~~~~l~--------~~f~~~~~~~~ 113 (611)
.-+.++|+-|||||++.|++...++.. .+.++...+.... .......++ .+..... .
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~---~ 128 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK---K 128 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH---h
Confidence 468899999999999999777766432 2344443322110 010001111 1111111 1
Q ss_pred cCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccc-c---HHhhccCCcceEE
Q 007255 114 SGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI-D---PALRRSGRFDAEV 189 (611)
Q Consensus 114 ~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l-~---~~l~~~~Rf~~~i 189 (611)
..+|.++++||++.+... ....+..+.+. ......+-.+++++-..--..+ - ..+.. |+...|
T Consensus 129 g~r~v~l~vdEah~L~~~----------~le~Lrll~nl-~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir~ 195 (269)
T COG3267 129 GKRPVVLMVDEAHDLNDS----------ALEALRLLTNL-EEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIRI 195 (269)
T ss_pred CCCCeEEeehhHhhhChh----------HHHHHHHHHhh-cccccCceeeeecCCcccchhhchHHHHhhhh--eEEEEE
Confidence 245789999999988652 23333333322 2222233346666643321111 1 22333 787669
Q ss_pred EccCCCHHHHHHHHHHhhcCCCCC----CcccHHHHHHhccCCccccHHHHHHHHHHHHhhh
Q 007255 190 EVTVPTAEERFEILKLYTKKVPLD----ANVDLEAIATSCNGYVGADLEALCREATMSAVKR 247 (611)
Q Consensus 190 ~~~~p~~~~r~~Il~~~~~~~~~~----~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r 247 (611)
++++.+.++-..+++++++..... .+.-+..+....+|+ ++-+.+++..|+..+..-
T Consensus 196 ~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~-P~lin~~~~~Al~~a~~a 256 (269)
T COG3267 196 ELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGI-PRLINNLATLALDAAYSA 256 (269)
T ss_pred ecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccc-hHHHHHHHHHHHHHHHHc
Confidence 999999999999999988776433 233467777778884 666888888887666553
No 487
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.05 E-value=9.7e-05 Score=74.10 Aligned_cols=165 Identities=20% Similarity=0.271 Sum_probs=99.2
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccc--------
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH-------- 90 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~-------- 90 (611)
..+.+.+.++..|...+-. . .-..|.++.++|-+|||||.+++.+.+.++.+.+.+++-+..
T Consensus 6 ~~v~~Re~qi~~L~~Llg~-----~-----~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGN-----N-----SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEK 75 (438)
T ss_pred cCccchHHHHHHHHHHhCC-----C-----CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHH
Confidence 4567888889888887632 1 113567889999999999999999999999888887765321
Q ss_pred -------cccccchH----HHHHH---HHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC
Q 007255 91 -------KAHVGESE----KALRE---AFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS 156 (611)
Q Consensus 91 -------~~~~~~~~----~~l~~---~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 156 (611)
....|... ..+.+ .|.+........+...|++|.+|.+.. .+..+...++.+-+-...
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD-------~~a~ll~~l~~L~el~~~- 147 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD-------MDAILLQCLFRLYELLNE- 147 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc-------cchHHHHHHHHHHHHhCC-
Confidence 11122111 22333 333322222223467899999998853 333556666655543322
Q ss_pred CCCCCcEEEEEeecCcccccHHhhccCCc-ceEEEccCCCHHHHHHHHHHhh
Q 007255 157 KTSVPHVVVVASTNRVDAIDPALRRSGRF-DAEVEVTVPTAEERFEILKLYT 207 (611)
Q Consensus 157 ~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf-~~~i~~~~p~~~~r~~Il~~~~ 207 (611)
+.+.++.+...... .-..+-|.+ -.+++||.|+.++.+.|+..-.
T Consensus 148 ----~~i~iils~~~~e~--~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 148 ----PTIVIILSAPSCEK--QYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ----CceEEEEeccccHH--HhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 12344433332111 111111222 2578999999999999998643
No 488
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.05 E-value=0.0001 Score=88.64 Aligned_cols=180 Identities=18% Similarity=0.210 Sum_probs=96.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---EEEccc---c-
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL---TVISPH---S- 88 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~---~~v~~~---~- 88 (611)
..+++++|.++.++.+...+.. +....+-+-++|++|+||||+|+++++.+...+ +.++.. .
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred cccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 4567899999999999887632 123456789999999999999999988774432 111110 0
Q ss_pred --ccc-cc---ccch----HHHHHHHHHH---------HHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHH
Q 007255 89 --VHK-AH---VGES----EKALREAFSQ---------ASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (611)
Q Consensus 89 --~~~-~~---~~~~----~~~l~~~f~~---------~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~ 149 (611)
... .. .... ...+..++.. ........++.+|++||++.. .....+...
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~------------~~l~~L~~~ 317 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ------------DVLDALAGQ 317 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH------------HHHHHHHhh
Confidence 000 00 0000 0011111100 001112346778999998632 222333322
Q ss_pred HhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc---ccHHHHHHhcc
Q 007255 150 MDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN---VDLEAIATSCN 226 (611)
Q Consensus 150 l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~---~~~~~la~~~~ 226 (611)
.+.. . . .-.||.||... .+.+....+..+.++.|+.++..++|..+..+.....+ .-...++..+.
T Consensus 318 ~~~~----~-~-GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~ 386 (1153)
T PLN03210 318 TQWF----G-S-GSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAG 386 (1153)
T ss_pred CccC----C-C-CcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhC
Confidence 2211 1 1 12455556642 22222245568899999999999999877644322221 11344566677
Q ss_pred CCc
Q 007255 227 GYV 229 (611)
Q Consensus 227 g~~ 229 (611)
|..
T Consensus 387 GLP 389 (1153)
T PLN03210 387 NLP 389 (1153)
T ss_pred CCc
Confidence 653
No 489
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.04 E-value=4e-05 Score=65.57 Aligned_cols=53 Identities=26% Similarity=0.248 Sum_probs=42.1
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l 77 (611)
..|.||.-+++.+..++..-+..+ .-+.|.-+-|+|+||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 468999999999999887654432 12345566699999999999999999986
No 490
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.01 E-value=4.1e-05 Score=77.33 Aligned_cols=118 Identities=20% Similarity=0.184 Sum_probs=71.0
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhcc----------------ccccchHHHHHHHHHHHH
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYS----------------MYVGESEALLRNTFQRAR 380 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~----------------~~~g~~~~~~~~~~~~a~ 380 (611)
|++..+-++++||||||||+||..++.+. +...+.++...... ......+..+..+...++
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56767778999999999999988776554 55566565433211 112223444544545556
Q ss_pred hcCCcEEEEcccccccccCCCCC---CCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 007255 381 LAAPSIIFFDEADVVGAKRGGSS---STSITVGERLLSTLLTEMDGLEQAKGILVLAATN 437 (611)
Q Consensus 381 ~~~p~il~iDeid~l~~~~~~~~---~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn 437 (611)
...+++|+||-+-.+.+...-.+ +.......+++++++..|.......++.+|+|..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 67789999999999876422111 1111123355555555555444556677775543
No 491
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.01 E-value=7.7e-06 Score=84.46 Aligned_cols=105 Identities=22% Similarity=0.322 Sum_probs=61.8
Q ss_pred CCCCCCcceeCCCCCChHHHHHHHHHHhCCc-EEeecchhhcc-------ccccchHHHHHHHHHHHHhcCCcEEEEccc
Q 007255 321 ISPVRGALLHGPPGCSKTTLAKAAAHAAEAS-FFSLSGAELYS-------MYVGESEALLRNTFQRARLAAPSIIFFDEA 392 (611)
Q Consensus 321 ~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~-~~~~~~~~~~~-------~~~g~~~~~~~~~~~~a~~~~p~il~iDei 392 (611)
..+++|+.||||+|+|||+|.-++...+... -..++--+++. .+.|. ...+..+.+..... ..+|.|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~-~~~l~~va~~l~~~-~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQ-DDPLPQVADELAKE-SRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCC-CccHHHHHHHHHhc-CCEEEEeee
Confidence 4578999999999999999999998877441 11111111111 11111 11223333333222 239999999
Q ss_pred ccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCC-Cccc
Q 007255 393 DVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNR-PHAI 442 (611)
Q Consensus 393 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~-~~~l 442 (611)
+.- +-....++..|+..| -..++++|+|+|+ |++|
T Consensus 137 ~V~-----------DiaDAmil~rLf~~l----~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 137 QVT-----------DIADAMILKRLFEAL----FKRGVVLVATSNRPPEDL 172 (362)
T ss_pred ecc-----------chhHHHHHHHHHHHH----HHCCCEEEecCCCChHHH
Confidence 743 122345667777666 3467888899997 4544
No 492
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.00 E-value=5.2e-06 Score=82.66 Aligned_cols=135 Identities=22% Similarity=0.371 Sum_probs=73.0
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCcE---EeecchhhccccccchHHHHHHHHHHH----H-------hcCCcEEEE
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEASF---FSLSGAELYSMYVGESEALLRNTFQRA----R-------LAAPSIIFF 389 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~a----~-------~~~p~il~i 389 (611)
.+++||+||+|||||++++.+-..+...- ..++.+.. .+...++.+.+.. + .....|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 45799999999999999998766553221 22222211 1112222222111 0 112349999
Q ss_pred cccccccccCCCCCCCCcchhHHHHHHHHHHh-c--CCCCC--------CCeEEEEecCCCc---ccchhccCCCCccce
Q 007255 390 DEADVVGAKRGGSSSTSITVGERLLSTLLTEM-D--GLEQA--------KGILVLAATNRPH---AIDAALMRPGRFDLV 455 (611)
Q Consensus 390 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l-~--~~~~~--------~~~~vI~~tn~~~---~ld~al~r~gRf~~~ 455 (611)
||++.-.... ....-.-+||+++ + |.... .++.+|+|++.+. .+++.++| .|. +
T Consensus 107 DDlN~p~~d~---------ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i 174 (272)
T PF12775_consen 107 DDLNMPQPDK---------YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-I 174 (272)
T ss_dssp ETTT-S---T---------TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-E
T ss_pred cccCCCCCCC---------CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-E
Confidence 9998653221 1111122444433 2 21111 2577888887543 47888887 676 8
Q ss_pred eecCCCCHHHHHHHHHHHhcC
Q 007255 456 LYVPPPDLEARHEILRVHTRN 476 (611)
Q Consensus 456 i~~~~p~~~~r~~il~~~~~~ 476 (611)
+.++.|+.++...|+...+..
T Consensus 175 ~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 175 LNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp EE----TCCHHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHhh
Confidence 999999999999998866543
No 493
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.00051 Score=65.41 Aligned_cols=149 Identities=13% Similarity=0.065 Sum_probs=101.5
Q ss_pred CCCCCcceeCCCC-CChHHHHHHHHHHhCCc---------EEeecchhhcccc-ccchHHHHHHHHHHHHh----cCCcE
Q 007255 322 SPVRGALLHGPPG-CSKTTLAKAAAHAAEAS---------FFSLSGAELYSMY-VGESEALLRNTFQRARL----AAPSI 386 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G-~GKT~la~ala~~~~~~---------~~~~~~~~~~~~~-~g~~~~~~~~~~~~a~~----~~p~i 386 (611)
+-.+++||.|..+ +||..++.-++..+.+. +..+.+..-..+. ..-.-..++.+.+.+.. ....|
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 4457899999998 99999999988877432 2333221100000 00123455555554432 23459
Q ss_pred EEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHH
Q 007255 387 IFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEAR 466 (611)
Q Consensus 387 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r 466 (611)
++|+++|.+ +....|+||+.|+ +++.++++|..|+.++.+.|.+++ |+. .+.|+.|+...-
T Consensus 93 iII~~ae~m--------------t~~AANALLKtLE--EPP~~t~fILit~~~~~LLpTIrS--RCq-~i~~~~p~~~~~ 153 (263)
T PRK06581 93 AIIYSAELM--------------NLNAANSCLKILE--DAPKNSYIFLITSRAASIISTIRS--RCF-KINVRSSILHAY 153 (263)
T ss_pred EEEechHHh--------------CHHHHHHHHHhhc--CCCCCeEEEEEeCChhhCchhHhh--ceE-EEeCCCCCHHHH
Confidence 999999987 3567899999999 688899999999999999999998 987 888999988777
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHh
Q 007255 467 HEILRVHTRNMKVGDDVDLRSIAEE 491 (611)
Q Consensus 467 ~~il~~~~~~~~~~~~~~~~~la~~ 491 (611)
.+.+........ ++..++.+.+.
T Consensus 154 ~e~~~~~~~p~~--~~~~l~~i~~~ 176 (263)
T PRK06581 154 NELYSQFIQPIA--DNKTLDFINRF 176 (263)
T ss_pred HHHHHHhccccc--ccHHHHHHHHH
Confidence 777665544332 23334444444
No 494
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.99 E-value=0.00083 Score=80.98 Aligned_cols=176 Identities=20% Similarity=0.250 Sum_probs=97.1
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcE---Eeecch---h
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF---FSLSGA---E 359 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~---~~~~~~---~ 359 (611)
...+++++|.+...+.+...+.. .....+-+-++||+|+|||++|+++++.+...| +.++.. .
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred CcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 34577899999888888877653 223345678999999999999999988774332 111110 0
Q ss_pred hcccccc----c-------hHHHHHHH-------------HHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHH
Q 007255 360 LYSMYVG----E-------SEALLRNT-------------FQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLS 415 (611)
Q Consensus 360 ~~~~~~g----~-------~~~~~~~~-------------~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 415 (611)
....+.. . ....+..+ .+..-..++.+|++|+++.. ....
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~----------------~~l~ 312 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ----------------DVLD 312 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH----------------HHHH
Confidence 0000000 0 00001111 11112245668999998632 2233
Q ss_pred HHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccH----HHHHHh
Q 007255 416 TLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDL----RSIAEE 491 (611)
Q Consensus 416 ~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~----~~la~~ 491 (611)
.+....+.+ ..+..||.||...+.+ +....+.++.++.|+.++..+++..+.-+.... ..++ ..+++.
T Consensus 313 ~L~~~~~~~--~~GsrIIiTTrd~~vl-----~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~ 384 (1153)
T PLN03210 313 ALAGQTQWF--GSGSRIIVITKDKHFL-----RAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALR 384 (1153)
T ss_pred HHHhhCccC--CCCcEEEEEeCcHHHH-----HhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHH
Confidence 443333322 1233455577755443 212456788999999999999998665332221 2222 346667
Q ss_pred CCCCC
Q 007255 492 TELFT 496 (611)
Q Consensus 492 ~~g~s 496 (611)
+.|..
T Consensus 385 c~GLP 389 (1153)
T PLN03210 385 AGNLP 389 (1153)
T ss_pred hCCCc
Confidence 77754
No 495
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.98 E-value=1.3e-05 Score=67.88 Aligned_cols=24 Identities=33% Similarity=0.848 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q 007255 56 LLLYGPPGTGKTSLVRAVVRECGA 79 (611)
Q Consensus 56 iLl~Gp~GtGKT~la~~la~~l~~ 79 (611)
|.|+||||+|||++++.+++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999988753
No 496
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.97 E-value=7.9e-06 Score=89.56 Aligned_cols=173 Identities=21% Similarity=0.203 Sum_probs=100.7
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhCchHHHhcC----CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccc
Q 007255 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLG----LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAH 93 (611)
Q Consensus 18 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g----~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~ 93 (611)
...|.|.+++|+.|.-.+-- +.....+ ++-.-|+||+|.||||||.+.+.+++.+...++.-...+- .
T Consensus 285 aPsIyG~e~VKkAilLqLfg-----Gv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss---~ 356 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFG-----GVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS---A 356 (682)
T ss_pred cccccCcHHHHHHHHHHhcC-----CCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc---c
Confidence 45788999988887544421 1111111 2334799999999999999999999887655443221110 0
Q ss_pred ccchHHHHHHHH--H--HHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC-------CCCCc
Q 007255 94 VGESEKALREAF--S--QASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK-------TSVPH 162 (611)
Q Consensus 94 ~~~~~~~l~~~f--~--~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~~~ 162 (611)
.|.+....++-. + --........++|..|||+|.|.. .....+...|+...-+. +.+.+
T Consensus 357 ~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~----------~dr~aihEaMEQQtIsIaKAGI~atLnAR 426 (682)
T COG1241 357 AGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE----------EDRVAIHEAMEQQTISIAKAGITATLNAR 426 (682)
T ss_pred cCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh----------HHHHHHHHHHHhcEeeecccceeeecchh
Confidence 111111111100 0 000011123477999999998844 33566777777632221 22345
Q ss_pred EEEEEeecCcc-------------cccHHhhccCCcceEE-EccCCCHHHHHHHHHHhhcCC
Q 007255 163 VVVVASTNRVD-------------AIDPALRRSGRFDAEV-EVTVPTAEERFEILKLYTKKV 210 (611)
Q Consensus 163 v~ii~ttn~~~-------------~l~~~l~~~~Rf~~~i-~~~~p~~~~r~~Il~~~~~~~ 210 (611)
+-++|++|+.. .+++.+.+ ||+..+ ..+.|+.+.=..+..+.+..+
T Consensus 427 csvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 427 CSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred hhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 56888888854 66788999 999654 445677766666666655433
No 497
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.95 E-value=3.2e-05 Score=83.47 Aligned_cols=164 Identities=22% Similarity=0.247 Sum_probs=92.8
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccchHHHHHHHHHH---------------HHhcCCc
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQR---------------ARLAAPS 385 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------a~~~~p~ 385 (611)
...++++|++||||+++|+++.... +.+|+.++++.+..... -..+|.. .....+.
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEADGG 235 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECCCC
Confidence 4579999999999999999998665 57899999986532110 0111110 1123456
Q ss_pred EEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCC---------CCCeEEEEecCCCcccchhccCCCCccc--
Q 007255 386 IIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ---------AKGILVLAATNRPHAIDAALMRPGRFDL-- 454 (611)
Q Consensus 386 il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------~~~~~vI~~tn~~~~ld~al~r~gRf~~-- 454 (611)
+|||||||.+. ......|+..++.-.- .-++.+|++|+.+-. ....+|+|..
T Consensus 236 tl~ldei~~l~--------------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~---~~~~~~~~~~~l 298 (441)
T PRK10365 236 TLFLDEIGDIS--------------PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA---AEVNAGRFRQDL 298 (441)
T ss_pred EEEEeccccCC--------------HHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH---HHHHcCCchHHH
Confidence 99999999883 3455677777653210 114667877766431 1112233421
Q ss_pred -----eeecCCCCHHHHH----HHHHHHhcCC----CC----CCcccHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007255 455 -----VLYVPPPDLEARH----EILRVHTRNM----KV----GDDVDLRSIAEETELFTGAELEGLCREAGIV 510 (611)
Q Consensus 455 -----~i~~~~p~~~~r~----~il~~~~~~~----~~----~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~ 510 (611)
.+.+..|...+|. .+++.++.++ .. .++..+..|.....--+-++++++++.+...
T Consensus 299 ~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred HHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 3444455555443 3444443321 11 1233455566555322567777777766543
No 498
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.93 E-value=9.7e-05 Score=76.29 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=54.6
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHh----CCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEccccccccc
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAA----EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAK 398 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~ 398 (611)
...++++.||+|||||+++.+++... | -..+++++.... -...+. .-...++|+|||+..+.-
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L-------~~~~lg--~v~~~DlLI~DEvgylp~- 274 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI-------STRQIG--LVGRWDVVAFDEVATLKF- 274 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH-------HHHHHh--hhccCCEEEEEcCCCCcC-
Confidence 34689999999999999999988762 3 222333332211 001111 124467999999977521
Q ss_pred CCCCCCCCcchhHHHHHHHHHHhcCCC---------CCCCeEEEEecCC
Q 007255 399 RGGSSSTSITVGERLLSTLLTEMDGLE---------QAKGILVLAATNR 438 (611)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~~tn~ 438 (611)
...+.++..|...|+.-. ....++++|-+|.
T Consensus 275 ---------~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 275 ---------AKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred ---------CchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 122455666666665321 2234666776654
No 499
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.92 E-value=2.3e-05 Score=73.49 Aligned_cols=58 Identities=34% Similarity=0.514 Sum_probs=36.2
Q ss_pred cCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEcccc
Q 007255 21 IGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH---LTVISPHS 88 (611)
Q Consensus 21 i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~---~~~v~~~~ 88 (611)
++|.++..++|...+.. . ....+..++++|++|+|||++++.++..+... ++.+++..
T Consensus 2 fvgR~~e~~~l~~~l~~-~---------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A---------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T---------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred CCCHHHHHHHHHHHHHH-H---------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 58999999999887741 1 12345899999999999999999987766433 55554443
No 500
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.90 E-value=6.4e-05 Score=76.00 Aligned_cols=118 Identities=20% Similarity=0.185 Sum_probs=69.2
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhcc----------------ccccchHHHHHHHHHHHH
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYS----------------MYVGESEALLRNTFQRAR 380 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~----------------~~~g~~~~~~~~~~~~a~ 380 (611)
|++..+-+.++||||||||++|..++.+. +...+.++...-.. ......+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 56666678899999999999999877554 56666665533111 112223444444444456
Q ss_pred hcCCcEEEEcccccccccCCCCC---CCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 007255 381 LAAPSIIFFDEADVVGAKRGGSS---STSITVGERLLSTLLTEMDGLEQAKGILVLAATN 437 (611)
Q Consensus 381 ~~~p~il~iDeid~l~~~~~~~~---~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn 437 (611)
...+++|+||-+-.+++.....+ +.......+.+.+.+..|-......++.+|.+..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67789999999999886422111 1111122344455555444444455666665543
Done!