Query 007255
Match_columns 611
No_of_seqs 476 out of 3737
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 21:10:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1.7E-90 5.7E-95 771.9 32.0 529 16-552 201-762 (806)
2 1ypw_A Transitional endoplasmi 100.0 5.4E-67 1.9E-71 595.1 25.8 529 16-552 201-762 (806)
3 4b4t_J 26S protease regulatory 100.0 1.5E-53 5.2E-58 437.6 25.5 261 273-535 131-391 (405)
4 4b4t_I 26S protease regulatory 100.0 1E-51 3.6E-56 424.3 23.2 257 279-537 171-427 (437)
5 4b4t_L 26S protease subunit RP 100.0 1.2E-50 4.2E-55 423.3 27.5 265 275-541 166-430 (437)
6 4b4t_H 26S protease regulatory 100.0 1.6E-50 5.4E-55 419.7 26.0 252 282-535 201-452 (467)
7 4b4t_M 26S protease regulatory 100.0 2.3E-50 7.9E-55 420.9 26.8 262 275-538 166-427 (434)
8 4b4t_K 26S protease regulatory 100.0 1.3E-49 4.6E-54 415.1 23.5 257 281-539 163-421 (428)
9 4b4t_J 26S protease regulatory 100.0 1.3E-41 4.5E-46 349.1 28.9 251 4-273 136-390 (405)
10 3cf0_A Transitional endoplasmi 100.0 2.8E-41 9.7E-46 342.8 25.9 273 279-551 4-299 (301)
11 3cf2_A TER ATPase, transitiona 100.0 5.8E-42 2E-46 381.9 21.4 252 282-536 196-462 (806)
12 4b4t_I 26S protease regulatory 100.0 6.2E-41 2.1E-45 344.4 26.6 251 5-274 171-425 (437)
13 4b4t_M 26S protease regulatory 100.0 3.2E-40 1.1E-44 344.4 27.3 256 5-279 170-429 (434)
14 4b4t_H 26S protease regulatory 100.0 6.5E-40 2.2E-44 340.2 28.2 249 5-272 198-450 (467)
15 4b4t_L 26S protease subunit RP 100.0 3.8E-40 1.3E-44 344.2 26.5 252 5-275 170-425 (437)
16 1xwi_A SKD1 protein; VPS4B, AA 100.0 6.5E-40 2.2E-44 335.3 26.3 265 282-552 4-318 (322)
17 4b4t_K 26S protease regulatory 100.0 6.4E-39 2.2E-43 334.6 29.2 248 5-271 161-413 (428)
18 2x8a_A Nuclear valosin-contain 100.0 3E-39 1E-43 322.3 23.4 257 283-542 3-273 (274)
19 3eie_A Vacuolar protein sortin 100.0 3.2E-39 1.1E-43 331.1 23.3 268 279-552 7-317 (322)
20 2qp9_X Vacuolar protein sortin 100.0 1.7E-38 5.9E-43 329.3 25.0 271 276-552 37-350 (355)
21 2zan_A Vacuolar protein sortin 100.0 1.1E-37 3.9E-42 332.4 22.0 271 276-552 120-440 (444)
22 2ce7_A Cell division protein F 100.0 2E-35 6.9E-40 313.5 27.0 248 284-534 10-257 (476)
23 3h4m_A Proteasome-activating n 100.0 1.6E-34 5.3E-39 291.5 26.2 250 283-534 10-259 (285)
24 1lv7_A FTSH; alpha/beta domain 100.0 3E-34 1E-38 284.8 26.0 249 283-534 5-253 (257)
25 1r6b_X CLPA protein; AAA+, N-t 100.0 7.4E-34 2.5E-38 324.4 32.2 439 16-513 183-717 (758)
26 3pxi_A Negative regulator of g 100.0 6E-34 2.1E-38 324.6 27.8 429 16-513 177-726 (758)
27 3hu3_A Transitional endoplasmi 100.0 4.6E-34 1.6E-38 306.0 23.3 249 285-536 199-462 (489)
28 3b9p_A CG5977-PA, isoform A; A 100.0 7.6E-34 2.6E-38 288.2 22.6 265 282-552 13-291 (297)
29 3d8b_A Fidgetin-like protein 1 100.0 5.2E-34 1.8E-38 296.2 21.7 263 284-552 78-353 (357)
30 3vfd_A Spastin; ATPase, microt 100.0 2.9E-33 1E-37 294.4 24.2 275 272-552 97-384 (389)
31 2dhr_A FTSH; AAA+ protein, hex 100.0 2.1E-33 7.2E-38 299.8 22.0 248 285-535 26-273 (499)
32 2qz4_A Paraplegin; AAA+, SPG7, 100.0 5.2E-33 1.8E-37 276.7 19.4 248 285-535 1-251 (262)
33 3hu3_A Transitional endoplasmi 100.0 2.1E-32 7.3E-37 293.1 24.6 273 17-297 202-484 (489)
34 1qvr_A CLPB protein; coiled co 100.0 2.8E-32 9.5E-37 314.0 26.6 448 16-514 167-822 (854)
35 1ixz_A ATP-dependent metallopr 100.0 4.5E-32 1.5E-36 268.6 24.5 246 282-530 8-253 (254)
36 1xwi_A SKD1 protein; VPS4B, AA 100.0 5.1E-31 1.8E-35 269.4 28.6 230 6-248 2-234 (322)
37 2x8a_A Nuclear valosin-contain 100.0 3E-31 1E-35 264.5 25.3 258 10-278 4-270 (274)
38 2r62_A Cell division protease 100.0 1.4E-33 4.8E-38 281.8 7.8 255 283-540 4-260 (268)
39 3cf0_A Transitional endoplasmi 100.0 2.3E-31 7.8E-36 269.9 24.1 260 6-276 5-285 (301)
40 3eie_A Vacuolar protein sortin 100.0 1.1E-30 3.9E-35 267.5 24.6 259 6-277 8-303 (322)
41 1iy2_A ATP-dependent metallopr 100.0 1.4E-30 4.8E-35 261.4 24.6 243 285-530 35-277 (278)
42 2qp9_X Vacuolar protein sortin 100.0 6.3E-30 2.2E-34 264.9 25.1 256 9-277 44-336 (355)
43 3h4m_A Proteasome-activating n 100.0 5.2E-29 1.8E-33 251.0 26.3 248 7-273 8-259 (285)
44 2ce7_A Cell division protein F 100.0 8.5E-29 2.9E-33 262.8 28.2 244 15-275 12-259 (476)
45 2zan_A Vacuolar protein sortin 100.0 6.3E-29 2.2E-33 264.9 23.1 229 7-248 125-356 (444)
46 1lv7_A FTSH; alpha/beta domain 100.0 4.5E-28 1.5E-32 240.2 27.3 242 14-272 7-252 (257)
47 1ypw_A Transitional endoplasmi 100.0 5.3E-28 1.8E-32 274.9 24.9 231 283-516 197-427 (806)
48 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.3E-27 7.7E-32 235.8 21.6 238 17-271 4-248 (262)
49 2dhr_A FTSH; AAA+ protein, hex 100.0 4.1E-27 1.4E-31 251.2 23.7 245 15-276 27-275 (499)
50 3d8b_A Fidgetin-like protein 1 99.9 1.2E-26 4E-31 240.8 24.5 251 17-276 82-338 (357)
51 3b9p_A CG5977-PA, isoform A; A 99.9 2.5E-26 8.6E-31 232.7 25.4 258 8-276 13-276 (297)
52 1ixz_A ATP-dependent metallopr 99.9 3.9E-26 1.3E-30 225.9 25.8 238 15-269 12-253 (254)
53 2c9o_A RUVB-like 1; hexameric 99.9 2.3E-28 8E-33 261.9 8.0 362 17-533 35-437 (456)
54 3vfd_A Spastin; ATPase, microt 99.9 5.3E-26 1.8E-30 239.0 25.6 250 17-275 113-368 (389)
55 2r62_A Cell division protease 99.9 4E-28 1.4E-32 242.2 4.3 246 15-276 7-257 (268)
56 1iy2_A ATP-dependent metallopr 99.9 5.3E-25 1.8E-29 220.7 26.6 239 14-269 35-277 (278)
57 3t15_A Ribulose bisphosphate c 99.9 1.1E-26 3.7E-31 234.2 10.6 176 320-502 32-222 (293)
58 1g41_A Heat shock protein HSLU 99.9 2.9E-23 9.9E-28 217.0 23.1 383 19-545 15-442 (444)
59 2c9o_A RUVB-like 1; hexameric 99.9 1.9E-25 6.6E-30 239.3 -1.2 205 284-506 31-262 (456)
60 3t15_A Ribulose bisphosphate c 99.9 4.1E-23 1.4E-27 208.0 13.7 183 48-236 31-223 (293)
61 3syl_A Protein CBBX; photosynt 99.9 1.5E-21 5.2E-26 198.7 17.0 224 290-526 31-279 (309)
62 3syl_A Protein CBBX; photosynt 99.8 3.4E-20 1.2E-24 188.7 19.1 216 17-249 28-267 (309)
63 3uk6_A RUVB-like 2; hexameric 99.8 4.1E-20 1.4E-24 192.9 16.5 219 285-532 39-329 (368)
64 3cmw_A Protein RECA, recombina 99.8 3.9E-21 1.3E-25 227.8 8.0 157 283-440 1013-1219(1706)
65 4akg_A Glutathione S-transfera 99.8 2.3E-19 7.8E-24 221.7 23.6 326 52-393 1266-1677(2695)
66 3pfi_A Holliday junction ATP-d 99.8 1.5E-18 5.2E-23 178.8 22.0 218 283-535 22-256 (338)
67 1ofh_A ATP-dependent HSL prote 99.8 2.3E-19 8E-24 182.4 15.3 240 290-533 15-299 (310)
68 1g41_A Heat shock protein HSLU 99.8 1.1E-20 3.6E-25 197.6 5.1 169 290-470 15-188 (444)
69 3m6a_A ATP-dependent protease 99.8 9.3E-20 3.2E-24 198.6 9.8 226 286-532 77-340 (543)
70 1d2n_A N-ethylmaleimide-sensit 99.8 2.9E-18 1E-22 171.0 16.5 224 290-533 33-264 (272)
71 1hqc_A RUVB; extended AAA-ATPa 99.8 1.1E-17 3.7E-22 171.2 20.6 234 284-551 6-259 (324)
72 3hws_A ATP-dependent CLP prote 99.8 1.1E-18 3.7E-23 181.6 13.0 224 291-516 16-327 (363)
73 3pfi_A Holliday junction ATP-d 99.8 3.6E-17 1.2E-21 168.5 24.2 196 16-244 26-234 (338)
74 3uk6_A RUVB-like 2; hexameric 99.8 1.1E-17 3.9E-22 174.3 20.7 219 18-271 43-329 (368)
75 3pvs_A Replication-associated 99.8 4.5E-18 1.6E-22 180.4 15.9 212 283-536 19-247 (447)
76 2z4s_A Chromosomal replication 99.8 8.7E-18 3E-22 178.5 17.7 221 285-535 100-334 (440)
77 1ofh_A ATP-dependent HSL prote 99.7 2.8E-17 9.5E-22 167.0 18.6 249 19-271 15-298 (310)
78 1r6b_X CLPA protein; AAA+, N-t 99.7 1.9E-17 6.5E-22 188.9 18.3 223 286-533 182-433 (758)
79 3u61_B DNA polymerase accessor 99.7 1.7E-17 5.7E-22 169.9 15.6 203 282-530 18-234 (324)
80 2chg_A Replication factor C sm 99.7 9.4E-17 3.2E-21 154.4 19.9 202 284-531 11-224 (226)
81 3pxg_A Negative regulator of g 99.7 3.8E-18 1.3E-22 182.9 11.0 205 285-531 175-404 (468)
82 1l8q_A Chromosomal replication 99.7 3.5E-17 1.2E-21 167.5 17.3 197 285-510 6-214 (324)
83 1d2n_A N-ethylmaleimide-sensit 99.7 6.7E-17 2.3E-21 161.1 18.5 194 19-228 33-229 (272)
84 3hws_A ATP-dependent CLP prote 99.7 1.8E-17 6.2E-22 172.3 13.7 243 20-265 16-342 (363)
85 1qvr_A CLPB protein; coiled co 99.7 1.4E-17 4.7E-22 191.8 13.8 203 286-514 166-395 (854)
86 3vkg_A Dynein heavy chain, cyt 99.7 1.7E-15 5.8E-20 188.1 29.9 329 52-393 1303-1714(3245)
87 1um8_A ATP-dependent CLP prote 99.7 8.9E-17 3E-21 168.0 15.9 238 291-530 22-362 (376)
88 2v1u_A Cell division control p 99.7 4.3E-16 1.5E-20 163.2 20.5 223 288-533 17-276 (387)
89 1hqc_A RUVB; extended AAA-ATPa 99.7 2.2E-16 7.4E-21 161.5 16.8 196 14-241 7-215 (324)
90 3m6a_A ATP-dependent protease 99.7 9E-17 3.1E-21 175.0 14.4 229 19-270 81-339 (543)
91 3pxi_A Negative regulator of g 99.7 3.4E-17 1.2E-21 186.4 11.5 189 285-514 175-388 (758)
92 1jbk_A CLPB protein; beta barr 99.7 6E-17 2.1E-21 151.9 10.8 159 286-470 18-194 (195)
93 1in4_A RUVB, holliday junction 99.7 2.4E-15 8.2E-20 154.2 23.2 215 285-534 20-251 (334)
94 1sxj_A Activator 1 95 kDa subu 99.7 8E-17 2.7E-21 175.0 12.6 227 280-531 29-272 (516)
95 3bos_A Putative DNA replicatio 99.7 3.2E-16 1.1E-20 152.8 15.6 205 286-531 24-241 (242)
96 1njg_A DNA polymerase III subu 99.7 4.2E-16 1.4E-20 151.9 16.0 209 284-530 17-248 (250)
97 1sxj_D Activator 1 41 kDa subu 99.7 5.6E-16 1.9E-20 160.4 17.2 211 282-532 29-262 (353)
98 3pvs_A Replication-associated 99.7 1E-15 3.6E-20 162.2 18.7 209 16-272 23-244 (447)
99 4fcw_A Chaperone protein CLPB; 99.7 2.8E-16 9.4E-21 159.8 13.6 204 290-515 17-282 (311)
100 3u61_B DNA polymerase accessor 99.7 1.5E-15 5.1E-20 155.4 18.3 178 16-230 23-210 (324)
101 2chq_A Replication factor C sm 99.7 4.5E-16 1.5E-20 158.7 14.4 206 283-530 10-223 (319)
102 1g8p_A Magnesium-chelatase 38 99.7 6.1E-16 2.1E-20 160.0 15.5 216 285-532 19-321 (350)
103 1um8_A ATP-dependent CLP prote 99.7 2.4E-15 8.1E-20 157.1 20.1 244 20-267 22-360 (376)
104 4fcw_A Chaperone protein CLPB; 99.7 1E-15 3.5E-20 155.5 16.6 210 19-247 17-281 (311)
105 2chg_A Replication factor C sm 99.7 9.1E-15 3.1E-19 140.4 21.7 187 16-241 14-208 (226)
106 1sxj_B Activator 1 37 kDa subu 99.7 1.9E-15 6.6E-20 154.2 17.5 203 283-531 14-229 (323)
107 1njg_A DNA polymerase III subu 99.6 8.1E-15 2.8E-19 142.7 20.5 188 16-241 20-232 (250)
108 1jr3_A DNA polymerase III subu 99.6 1.5E-15 5.3E-20 158.3 16.1 189 284-510 10-227 (373)
109 2r44_A Uncharacterized protein 99.6 1.6E-15 5.3E-20 155.7 15.9 209 288-532 25-296 (331)
110 2qby_B CDC6 homolog 3, cell di 99.6 1.4E-15 4.9E-20 159.2 15.6 212 289-533 19-270 (384)
111 1jbk_A CLPB protein; beta barr 99.6 5.4E-16 1.9E-20 145.4 11.1 159 16-203 19-194 (195)
112 1iqp_A RFCS; clamp loader, ext 99.6 2.9E-15 9.9E-20 153.2 16.6 206 283-530 18-231 (327)
113 3te6_A Regulatory protein SIR3 99.6 1.3E-15 4.4E-20 152.9 12.3 159 292-476 22-213 (318)
114 2p65_A Hypothetical protein PF 99.6 1.1E-15 3.7E-20 142.6 11.0 152 286-462 18-187 (187)
115 1fnn_A CDC6P, cell division co 99.6 2.8E-14 9.5E-19 149.6 20.8 221 288-536 15-277 (389)
116 3te6_A Regulatory protein SIR3 99.6 7.8E-15 2.7E-19 147.3 15.6 167 15-209 16-213 (318)
117 2qby_A CDC6 homolog 1, cell di 99.6 1.8E-14 6.1E-19 150.7 19.1 223 286-533 16-272 (386)
118 3cmw_A Protein RECA, recombina 99.6 1.3E-14 4.5E-19 172.4 20.0 150 11-172 1015-1218(1706)
119 3pxg_A Negative regulator of g 99.6 5.6E-15 1.9E-19 158.3 15.3 184 16-244 177-385 (468)
120 2r44_A Uncharacterized protein 99.6 2.5E-14 8.6E-19 146.7 19.5 164 16-209 24-200 (331)
121 1l8q_A Chromosomal replication 99.6 1.2E-14 4.2E-19 148.5 16.5 195 16-243 8-214 (324)
122 1g8p_A Magnesium-chelatase 38 99.6 7.7E-15 2.6E-19 151.7 14.6 222 16-271 21-321 (350)
123 1sxj_E Activator 1 40 kDa subu 99.6 7.4E-15 2.5E-19 152.1 14.4 192 283-511 7-244 (354)
124 1in4_A RUVB, holliday junction 99.6 1.4E-13 4.8E-18 141.1 22.6 217 15-272 21-250 (334)
125 2z4s_A Chromosomal replication 99.6 2.1E-14 7.2E-19 152.4 15.9 191 53-272 130-332 (440)
126 1iqp_A RFCS; clamp loader, ext 99.6 7.8E-14 2.7E-18 142.5 19.0 175 16-228 22-204 (327)
127 1sxj_C Activator 1 40 kDa subu 99.6 4.5E-14 1.5E-18 145.3 17.2 209 281-530 16-236 (340)
128 2p65_A Hypothetical protein PF 99.6 1.2E-14 4E-19 135.6 11.2 152 16-195 19-187 (187)
129 1sxj_B Activator 1 37 kDa subu 99.6 6.7E-14 2.3E-18 142.7 17.7 178 16-231 18-204 (323)
130 1jr3_A DNA polymerase III subu 99.6 1.7E-13 5.8E-18 142.8 21.1 188 16-241 13-225 (373)
131 2qby_B CDC6 homolog 3, cell di 99.6 9.1E-14 3.1E-18 145.5 18.8 194 19-244 20-252 (384)
132 2v1u_A Cell division control p 99.5 1.2E-13 4.1E-18 144.5 19.3 221 18-270 18-274 (387)
133 1sxj_A Activator 1 95 kDa subu 99.5 3.1E-14 1.1E-18 154.6 14.6 194 16-227 36-243 (516)
134 2chq_A Replication factor C sm 99.5 5.6E-14 1.9E-18 143.0 15.6 176 16-228 14-196 (319)
135 3bos_A Putative DNA replicatio 99.5 1.1E-13 3.7E-18 134.7 16.8 203 16-269 25-240 (242)
136 1a5t_A Delta prime, HOLB; zinc 99.5 7.9E-14 2.7E-18 142.9 16.4 174 295-507 7-208 (334)
137 1sxj_D Activator 1 41 kDa subu 99.5 9.5E-14 3.3E-18 143.5 17.0 187 16-241 34-239 (353)
138 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 1.7E-14 5.9E-19 154.1 11.6 202 291-527 23-280 (500)
139 4akg_A Glutathione S-transfera 99.5 8.3E-13 2.8E-17 163.8 26.6 354 53-461 645-1074(2695)
140 2bjv_A PSP operon transcriptio 99.5 1.1E-13 3.7E-18 137.2 12.5 202 17-244 4-240 (265)
141 1sxj_C Activator 1 40 kDa subu 99.5 1.3E-12 4.3E-17 134.5 20.0 174 16-227 22-203 (340)
142 1fnn_A CDC6P, cell division co 99.5 1.8E-12 6.1E-17 135.7 21.5 220 19-271 17-273 (389)
143 1a5t_A Delta prime, HOLB; zinc 99.5 2.1E-12 7.2E-17 132.3 20.9 170 23-230 6-199 (334)
144 2bjv_A PSP operon transcriptio 99.5 1E-13 3.5E-18 137.3 10.4 195 287-511 3-240 (265)
145 2qby_A CDC6 homolog 1, cell di 99.5 1.5E-12 5E-17 136.1 19.3 219 18-270 19-270 (386)
146 3f9v_A Minichromosome maintena 99.5 4.7E-14 1.6E-18 154.9 8.1 220 290-533 295-587 (595)
147 1sxj_E Activator 1 40 kDa subu 99.4 1.6E-12 5.3E-17 134.5 17.8 188 16-240 11-240 (354)
148 3cmu_A Protein RECA, recombina 99.4 8.9E-13 3.1E-17 158.3 17.2 119 320-439 1423-1563(2050)
149 1ojl_A Transcriptional regulat 99.4 4.3E-13 1.5E-17 135.3 12.2 196 19-244 2-235 (304)
150 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 5.2E-13 1.8E-17 142.7 12.9 159 19-207 22-196 (500)
151 2gno_A DNA polymerase III, gam 99.4 2.1E-12 7.1E-17 129.9 15.7 146 23-207 1-152 (305)
152 2gno_A DNA polymerase III, gam 99.4 7.7E-13 2.6E-17 133.0 12.6 142 294-474 1-152 (305)
153 1ojl_A Transcriptional regulat 99.4 2.9E-13 9.9E-18 136.6 8.8 190 291-511 3-235 (304)
154 3co5_A Putative two-component 99.4 2.4E-13 8.3E-18 121.2 7.0 132 20-194 5-142 (143)
155 3n70_A Transport activator; si 99.4 6.5E-13 2.2E-17 118.7 9.7 131 20-193 2-143 (145)
156 3f9v_A Minichromosome maintena 99.4 1.7E-13 5.8E-18 150.5 5.7 169 19-209 295-492 (595)
157 3n70_A Transport activator; si 99.4 5.4E-13 1.8E-17 119.2 7.6 112 291-439 2-116 (145)
158 3k1j_A LON protease, ATP-depen 99.3 8E-12 2.7E-16 138.1 15.8 232 282-547 33-388 (604)
159 3cmu_A Protein RECA, recombina 99.3 1.5E-12 5.1E-17 156.5 7.9 161 277-437 665-867 (2050)
160 3co5_A Putative two-component 99.3 9.2E-13 3.1E-17 117.4 4.4 112 291-439 5-116 (143)
161 1w5s_A Origin recognition comp 99.3 9.1E-11 3.1E-15 123.7 17.6 224 288-532 20-292 (412)
162 2krk_A 26S protease regulatory 99.2 2.9E-11 1E-15 96.6 7.9 77 458-536 8-84 (86)
163 3kw6_A 26S protease regulatory 99.2 5.1E-11 1.7E-15 93.8 9.1 74 459-534 1-74 (78)
164 3vkg_A Dynein heavy chain, cyt 99.2 1.7E-09 5.7E-14 135.3 27.2 129 53-205 604-751 (3245)
165 3k1j_A LON protease, ATP-depen 99.2 1.1E-10 3.8E-15 129.0 15.3 219 16-269 38-372 (604)
166 3vlf_B 26S protease regulatory 99.2 4E-11 1.4E-15 96.5 8.3 85 462-548 2-87 (88)
167 3aji_B S6C, proteasome (prosom 99.2 2.7E-11 9.4E-16 96.6 7.3 81 462-545 2-82 (83)
168 1w5s_A Origin recognition comp 99.2 8.2E-10 2.8E-14 116.4 19.1 209 19-245 22-274 (412)
169 3ec2_A DNA replication protein 99.0 3.5E-10 1.2E-14 104.7 8.5 99 285-395 5-112 (180)
170 2dzn_B 26S protease regulatory 99.0 2.8E-10 9.5E-15 90.4 4.2 80 464-545 1-81 (82)
171 2vhj_A Ntpase P4, P4; non- hyd 98.9 1.1E-09 3.7E-14 108.8 4.6 122 320-446 119-242 (331)
172 2kjq_A DNAA-related protein; s 98.8 2.4E-09 8E-14 95.7 5.8 104 323-458 35-145 (149)
173 2qen_A Walker-type ATPase; unk 98.8 1.3E-07 4.4E-12 96.9 17.7 184 18-230 11-240 (350)
174 3ec2_A DNA replication protein 98.8 6.1E-09 2.1E-13 96.3 6.4 97 16-128 7-112 (180)
175 1ny5_A Transcriptional regulat 98.8 3E-08 1E-12 103.3 11.5 194 19-244 137-370 (387)
176 2fna_A Conserved hypothetical 98.8 8.1E-08 2.8E-12 98.7 14.7 183 19-237 13-250 (357)
177 2w58_A DNAI, primosome compone 98.7 1.5E-08 5.2E-13 95.4 7.9 69 325-395 55-127 (202)
178 2qen_A Walker-type ATPase; unk 98.7 4.8E-07 1.6E-11 92.6 19.8 191 286-506 8-248 (350)
179 2kjq_A DNAA-related protein; s 98.7 2.1E-08 7.1E-13 89.5 8.0 60 52-130 35-97 (149)
180 2krk_A 26S protease regulatory 98.7 1.4E-08 4.9E-13 80.8 6.1 77 190-274 7-83 (86)
181 2r2a_A Uncharacterized protein 98.7 1.3E-08 4.3E-13 95.4 6.0 126 326-464 7-156 (199)
182 3f8t_A Predicted ATPase involv 98.7 5.4E-08 1.8E-12 101.0 11.1 209 292-532 215-482 (506)
183 3f8t_A Predicted ATPase involv 98.7 3.8E-08 1.3E-12 102.1 9.7 151 18-196 212-383 (506)
184 3kw6_A 26S protease regulatory 98.7 3.1E-08 1.1E-12 77.6 7.1 73 192-272 1-73 (78)
185 1ny5_A Transcriptional regulat 98.7 3.2E-08 1.1E-12 103.0 8.9 182 324-530 160-384 (387)
186 2fna_A Conserved hypothetical 98.7 2.2E-07 7.4E-12 95.4 14.8 188 287-506 10-252 (357)
187 3dzd_A Transcriptional regulat 98.7 4.9E-08 1.7E-12 100.8 9.6 191 19-243 129-360 (368)
188 1svm_A Large T antigen; AAA+ f 98.6 2.5E-08 8.5E-13 102.6 5.9 119 320-460 165-284 (377)
189 1tue_A Replication protein E1; 98.6 2.4E-07 8.3E-12 85.6 10.5 115 50-194 55-179 (212)
190 2r2a_A Uncharacterized protein 98.6 1.8E-07 6E-12 87.5 9.6 129 53-195 5-154 (199)
191 2w58_A DNAI, primosome compone 98.5 2.4E-07 8.2E-12 87.1 9.7 71 53-129 54-128 (202)
192 2qgz_A Helicase loader, putati 98.5 3.3E-08 1.1E-12 99.5 3.2 70 324-395 152-226 (308)
193 3vlf_B 26S protease regulatory 98.5 1.9E-07 6.5E-12 74.8 6.6 75 195-277 2-76 (88)
194 1tue_A Replication protein E1; 98.5 1.4E-07 4.7E-12 87.2 6.3 35 320-354 54-88 (212)
195 3dzd_A Transcriptional regulat 98.5 1.4E-07 4.9E-12 97.3 6.9 165 325-509 153-359 (368)
196 1jr3_D DNA polymerase III, del 98.5 1.6E-06 5.4E-11 88.8 14.3 174 323-532 17-208 (343)
197 3aji_B S6C, proteasome (prosom 98.4 3.2E-07 1.1E-11 72.7 6.8 75 195-277 2-76 (83)
198 2vhj_A Ntpase P4, P4; non- hyd 98.4 2.8E-07 9.7E-12 91.4 7.5 78 49-132 119-198 (331)
199 2qgz_A Helicase loader, putati 98.4 6.4E-07 2.2E-11 90.1 9.2 70 53-128 152-226 (308)
200 1u0j_A DNA replication protein 98.4 1.9E-06 6.4E-11 83.5 11.4 29 322-350 102-130 (267)
201 1jr3_D DNA polymerase III, del 98.3 4.7E-06 1.6E-10 85.2 12.0 148 52-227 17-176 (343)
202 1u0j_A DNA replication protein 98.2 5.6E-06 1.9E-10 80.2 11.6 121 51-204 102-248 (267)
203 1svm_A Large T antigen; AAA+ f 98.2 8.8E-07 3E-11 91.1 5.1 118 48-191 164-282 (377)
204 1ye8_A Protein THEP1, hypothet 98.1 2.4E-05 8.2E-10 71.7 12.3 26 327-352 3-28 (178)
205 3hr8_A Protein RECA; alpha and 98.0 1.5E-05 5E-10 81.2 9.3 116 320-435 57-194 (356)
206 1ye8_A Protein THEP1, hypothet 98.0 0.00011 3.8E-09 67.2 13.7 27 55-81 2-28 (178)
207 2dzn_B 26S protease regulatory 98.0 2.8E-06 9.5E-11 67.0 2.4 69 197-273 1-69 (82)
208 1xp8_A RECA protein, recombina 97.8 3.2E-05 1.1E-09 79.2 8.5 117 320-436 70-208 (366)
209 2zr9_A Protein RECA, recombina 97.7 2E-05 7E-10 80.3 5.4 78 320-397 57-153 (349)
210 2w0m_A SSO2452; RECA, SSPF, un 97.7 4.7E-05 1.6E-09 72.7 6.9 77 320-396 19-136 (235)
211 1u94_A RECA protein, recombina 97.7 4.1E-05 1.4E-09 78.1 6.4 78 320-397 59-155 (356)
212 1z6t_A APAF-1, apoptotic prote 97.7 0.00075 2.6E-08 74.2 17.0 173 16-230 121-322 (591)
213 3upu_A ATP-dependent DNA helic 97.6 4.6E-05 1.6E-09 81.0 6.5 59 276-348 10-69 (459)
214 1z6t_A APAF-1, apoptotic prote 97.6 0.0017 5.8E-08 71.3 18.4 177 289-505 123-329 (591)
215 2cvh_A DNA repair and recombin 97.6 0.00011 3.8E-09 69.4 7.7 39 320-358 16-54 (220)
216 3io5_A Recombination and repai 97.6 0.00012 4.1E-09 72.3 7.4 114 320-434 25-167 (333)
217 1n0w_A DNA repair protein RAD5 97.5 0.00011 3.6E-09 70.8 6.5 78 320-397 20-133 (243)
218 2cvh_A DNA repair and recombin 97.5 0.00048 1.6E-08 65.0 10.7 40 49-88 16-55 (220)
219 2z43_A DNA repair and recombin 97.5 7.2E-05 2.5E-09 75.6 4.8 116 320-436 103-255 (324)
220 1qhx_A CPT, protein (chloramph 97.4 0.00021 7.2E-09 65.1 6.9 35 325-359 4-38 (178)
221 1v5w_A DMC1, meiotic recombina 97.4 0.00013 4.4E-09 74.4 5.9 117 320-437 118-272 (343)
222 1n0w_A DNA repair protein RAD5 97.4 0.00036 1.2E-08 67.0 8.9 40 49-88 20-68 (243)
223 3sfz_A APAF-1, apoptotic pepti 97.4 0.00064 2.2E-08 81.5 13.0 172 16-229 121-321 (1249)
224 1qhx_A CPT, protein (chloramph 97.4 9.1E-05 3.1E-09 67.6 4.0 35 53-87 3-37 (178)
225 2iut_A DNA translocase FTSK; n 97.4 0.0024 8.2E-08 68.4 15.0 74 118-204 345-420 (574)
226 2orw_A Thymidine kinase; TMTK, 97.4 0.00021 7.1E-09 65.8 5.9 31 54-84 4-37 (184)
227 2a5y_B CED-4; apoptosis; HET: 97.4 0.0038 1.3E-07 67.9 16.9 166 22-229 131-330 (549)
228 2orw_A Thymidine kinase; TMTK, 97.3 5E-05 1.7E-09 70.0 1.4 30 326-355 5-37 (184)
229 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.00097 3.3E-08 63.4 10.6 37 49-85 19-58 (235)
230 2ehv_A Hypothetical protein PH 97.3 0.00048 1.6E-08 66.4 8.3 26 320-345 26-51 (251)
231 2b8t_A Thymidine kinase; deoxy 97.3 0.001 3.5E-08 62.9 10.2 76 53-129 12-102 (223)
232 3vaa_A Shikimate kinase, SK; s 97.3 0.00015 5.3E-09 67.5 4.4 34 51-84 23-56 (199)
233 3hr8_A Protein RECA; alpha and 97.3 0.00059 2E-08 69.3 8.9 82 49-130 57-153 (356)
234 2rhm_A Putative kinase; P-loop 97.3 0.00021 7.2E-09 66.0 5.2 34 50-83 2-35 (193)
235 3sfz_A APAF-1, apoptotic pepti 97.3 0.0029 9.8E-08 75.8 16.2 175 289-504 123-328 (1249)
236 3vaa_A Shikimate kinase, SK; s 97.3 0.00013 4.4E-09 68.1 3.5 35 322-356 23-57 (199)
237 3trf_A Shikimate kinase, SK; a 97.3 0.00023 7.7E-09 65.4 5.1 32 53-84 5-36 (185)
238 1gvn_B Zeta; postsegregational 97.3 0.00035 1.2E-08 69.2 6.7 61 25-90 10-70 (287)
239 3trf_A Shikimate kinase, SK; a 97.3 0.00013 4.6E-09 66.9 3.4 33 324-356 5-37 (185)
240 1xp8_A RECA protein, recombina 97.2 0.00074 2.5E-08 69.0 9.1 82 49-130 70-166 (366)
241 3upu_A ATP-dependent DNA helic 97.2 0.00044 1.5E-08 73.5 7.5 24 54-77 46-69 (459)
242 4a74_A DNA repair and recombin 97.2 0.0002 6.9E-09 68.1 4.2 29 320-348 21-49 (231)
243 2b8t_A Thymidine kinase; deoxy 97.2 0.00037 1.3E-08 66.0 5.8 69 326-395 14-101 (223)
244 2dr3_A UPF0273 protein PH0284; 97.2 0.0011 3.8E-08 63.6 9.3 36 320-355 19-57 (247)
245 1pzn_A RAD51, DNA repair and r 97.2 0.00032 1.1E-08 71.5 5.5 29 320-348 127-155 (349)
246 3lda_A DNA repair protein RAD5 97.2 0.00038 1.3E-08 72.1 6.0 118 320-438 174-327 (400)
247 2r8r_A Sensor protein; KDPD, P 97.2 0.0031 1.1E-07 59.2 11.6 29 325-353 7-38 (228)
248 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.0011 3.6E-08 64.7 8.7 37 53-89 4-43 (260)
249 3iij_A Coilin-interacting nucl 97.1 0.00034 1.2E-08 63.9 4.5 32 52-83 10-41 (180)
250 2rhm_A Putative kinase; P-loop 97.1 0.00023 7.9E-09 65.7 3.3 34 322-355 3-36 (193)
251 2zr9_A Protein RECA, recombina 97.1 0.00059 2E-08 69.4 6.5 82 49-130 57-153 (349)
252 2ehv_A Hypothetical protein PH 97.1 0.0024 8.3E-08 61.4 10.5 26 49-74 26-51 (251)
253 3kb2_A SPBC2 prophage-derived 97.1 0.00044 1.5E-08 62.4 4.8 31 55-85 3-33 (173)
254 3iij_A Coilin-interacting nucl 97.0 0.00039 1.3E-08 63.5 4.2 33 323-355 10-42 (180)
255 1y63_A LMAJ004144AAA protein; 97.0 0.0004 1.4E-08 63.8 4.2 32 52-83 9-41 (184)
256 3dm5_A SRP54, signal recogniti 97.0 0.0021 7.2E-08 67.0 10.1 72 323-394 99-193 (443)
257 1g5t_A COB(I)alamin adenosyltr 97.0 0.0059 2E-07 56.0 11.9 113 53-181 28-169 (196)
258 3e1s_A Exodeoxyribonuclease V, 97.0 0.00024 8.2E-09 77.4 3.1 97 325-438 205-317 (574)
259 1via_A Shikimate kinase; struc 97.0 0.00047 1.6E-08 62.6 4.6 29 55-83 6-34 (175)
260 1zp6_A Hypothetical protein AT 97.0 0.0004 1.4E-08 64.0 4.1 39 50-88 6-44 (191)
261 2dr3_A UPF0273 protein PH0284; 97.0 0.0021 7.3E-08 61.6 9.3 38 49-86 19-59 (247)
262 1y63_A LMAJ004144AAA protein; 97.0 0.00036 1.2E-08 64.1 3.5 32 324-355 10-42 (184)
263 1zuh_A Shikimate kinase; alpha 97.0 0.00054 1.8E-08 61.8 4.6 30 54-83 8-37 (168)
264 3umf_A Adenylate kinase; rossm 97.0 0.00061 2.1E-08 64.2 5.1 39 50-90 26-64 (217)
265 2i1q_A DNA repair and recombin 97.0 0.00034 1.2E-08 70.6 3.5 28 320-347 94-121 (322)
266 1via_A Shikimate kinase; struc 97.0 0.00038 1.3E-08 63.3 3.5 30 326-355 6-35 (175)
267 1kag_A SKI, shikimate kinase I 97.0 0.00053 1.8E-08 62.0 4.5 30 53-82 4-33 (173)
268 3crm_A TRNA delta(2)-isopenten 97.0 0.001 3.5E-08 66.4 6.8 36 53-88 5-40 (323)
269 2iyv_A Shikimate kinase, SK; t 97.0 0.00044 1.5E-08 63.4 3.8 30 54-83 3-32 (184)
270 2iut_A DNA translocase FTSK; n 97.0 0.0037 1.3E-07 66.9 11.5 74 385-471 345-420 (574)
271 3kb2_A SPBC2 prophage-derived 96.9 0.00045 1.5E-08 62.4 3.8 31 326-356 3-33 (173)
272 2cdn_A Adenylate kinase; phosp 96.9 0.00083 2.8E-08 62.5 5.6 33 52-84 19-51 (201)
273 1aky_A Adenylate kinase; ATP:A 96.9 0.00072 2.5E-08 64.0 5.2 32 52-83 3-34 (220)
274 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00036 1.2E-08 70.3 3.1 53 22-83 2-54 (359)
275 3io5_A Recombination and repai 96.9 0.0017 5.8E-08 64.2 7.8 82 49-131 25-126 (333)
276 2c95_A Adenylate kinase 1; tra 96.9 0.00055 1.9E-08 63.3 4.2 33 52-84 8-40 (196)
277 1gvn_B Zeta; postsegregational 96.9 0.00073 2.5E-08 66.8 5.3 39 323-361 32-70 (287)
278 1zd8_A GTP:AMP phosphotransfer 96.9 0.00048 1.7E-08 65.6 3.8 33 51-83 5-37 (227)
279 2p5t_B PEZT; postsegregational 96.9 0.0013 4.3E-08 63.9 6.8 39 322-360 30-68 (253)
280 2iyv_A Shikimate kinase, SK; t 96.9 0.00049 1.7E-08 63.0 3.7 31 326-356 4-34 (184)
281 1zuh_A Shikimate kinase; alpha 96.9 0.00045 1.5E-08 62.3 3.4 31 325-355 8-38 (168)
282 1tev_A UMP-CMP kinase; ploop, 96.9 0.00076 2.6E-08 62.2 4.9 30 53-82 3-32 (196)
283 2ius_A DNA translocase FTSK; n 96.9 0.0081 2.8E-07 63.8 13.2 76 116-204 296-374 (512)
284 3cm0_A Adenylate kinase; ATP-b 96.9 0.00065 2.2E-08 62.3 4.3 30 53-82 4-33 (186)
285 2p5t_B PEZT; postsegregational 96.9 0.0012 4.1E-08 64.0 6.2 40 50-89 29-68 (253)
286 3lw7_A Adenylate kinase relate 96.9 0.00061 2.1E-08 61.6 3.9 30 54-84 2-31 (179)
287 2ze6_A Isopentenyl transferase 96.9 0.0007 2.4E-08 65.7 4.5 32 55-86 3-34 (253)
288 1kag_A SKI, shikimate kinase I 96.9 0.00069 2.4E-08 61.3 4.2 30 325-354 5-34 (173)
289 3tlx_A Adenylate kinase 2; str 96.8 0.00069 2.4E-08 65.3 4.3 34 51-84 27-60 (243)
290 3be4_A Adenylate kinase; malar 96.8 0.00072 2.5E-08 63.9 4.4 32 53-84 5-36 (217)
291 1ly1_A Polynucleotide kinase; 96.8 0.0006 2E-08 62.1 3.6 32 53-86 2-34 (181)
292 3jvv_A Twitching mobility prot 96.8 0.0036 1.2E-07 63.7 9.8 26 52-77 122-147 (356)
293 2zts_A Putative uncharacterize 96.8 0.0013 4.5E-08 63.2 6.3 78 320-397 26-149 (251)
294 2a5y_B CED-4; apoptosis; HET: 96.8 0.0047 1.6E-07 67.1 11.2 165 293-495 131-329 (549)
295 2fz4_A DNA repair protein RAD2 96.8 0.0071 2.4E-07 57.8 11.3 34 54-87 109-142 (237)
296 3t61_A Gluconokinase; PSI-biol 96.8 0.00096 3.3E-08 62.2 5.0 31 53-83 18-48 (202)
297 3kl4_A SRP54, signal recogniti 96.8 0.0018 6.3E-08 67.4 7.6 72 323-394 96-190 (433)
298 1kht_A Adenylate kinase; phosp 96.8 0.00078 2.7E-08 62.0 4.3 26 53-78 3-28 (192)
299 2ze6_A Isopentenyl transferase 96.8 0.00065 2.2E-08 65.9 3.9 31 327-357 4-34 (253)
300 2z43_A DNA repair and recombin 96.8 0.0021 7.3E-08 64.7 7.8 40 49-88 103-151 (324)
301 1zp6_A Hypothetical protein AT 96.8 0.00049 1.7E-08 63.4 2.8 40 321-360 6-45 (191)
302 3jvv_A Twitching mobility prot 96.8 0.00074 2.5E-08 68.8 4.4 98 324-442 123-234 (356)
303 1e6c_A Shikimate kinase; phosp 96.8 0.00094 3.2E-08 60.3 4.6 30 54-83 3-32 (173)
304 1ak2_A Adenylate kinase isoenz 96.8 0.0011 3.8E-08 63.3 5.3 32 52-83 15-46 (233)
305 2bwj_A Adenylate kinase 5; pho 96.8 0.00074 2.5E-08 62.6 3.9 31 53-83 12-42 (199)
306 1nlf_A Regulatory protein REPA 96.8 0.00081 2.8E-08 66.3 4.4 29 320-348 26-54 (279)
307 2vli_A Antibiotic resistance p 96.8 0.00064 2.2E-08 62.1 3.4 30 53-82 5-34 (183)
308 1zak_A Adenylate kinase; ATP:A 96.8 0.00076 2.6E-08 63.9 4.0 31 52-82 4-34 (222)
309 2cdn_A Adenylate kinase; phosp 96.8 0.00076 2.6E-08 62.8 3.7 31 325-355 21-51 (201)
310 1g5t_A COB(I)alamin adenosyltr 96.8 0.0032 1.1E-07 57.8 7.8 102 325-439 29-163 (196)
311 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0023 8E-08 62.2 7.4 37 325-361 5-44 (260)
312 1qf9_A UMP/CMP kinase, protein 96.8 0.0013 4.5E-08 60.4 5.3 31 53-83 6-36 (194)
313 3e1s_A Exodeoxyribonuclease V, 96.7 0.0012 4E-08 72.0 5.6 32 53-84 204-238 (574)
314 3sr0_A Adenylate kinase; phosp 96.7 0.0012 4E-08 61.8 4.9 34 55-90 2-35 (206)
315 2eyu_A Twitching motility prot 96.7 0.0013 4.4E-08 64.0 5.4 70 322-392 23-107 (261)
316 1e6c_A Shikimate kinase; phosp 96.7 0.00072 2.5E-08 61.1 3.3 30 326-355 4-33 (173)
317 3dl0_A Adenylate kinase; phosp 96.7 0.0011 3.8E-08 62.4 4.8 30 55-84 2-31 (216)
318 2r8r_A Sensor protein; KDPD, P 96.7 0.0093 3.2E-07 56.0 10.9 34 53-86 6-42 (228)
319 1ukz_A Uridylate kinase; trans 96.7 0.0013 4.3E-08 61.4 5.0 32 52-83 14-45 (203)
320 1u94_A RECA protein, recombina 96.7 0.0018 6.3E-08 65.9 6.6 79 49-130 59-155 (356)
321 4eun_A Thermoresistant glucoki 96.7 0.0014 4.6E-08 61.1 5.2 31 52-82 28-58 (200)
322 1knq_A Gluconate kinase; ALFA/ 96.7 0.0014 4.7E-08 59.4 5.1 30 53-82 8-37 (175)
323 2fz4_A DNA repair protein RAD2 96.7 0.0016 5.5E-08 62.4 5.7 33 326-358 110-142 (237)
324 3fb4_A Adenylate kinase; psych 96.7 0.0013 4.3E-08 62.0 4.9 30 55-84 2-31 (216)
325 2pt5_A Shikimate kinase, SK; a 96.7 0.0013 4.6E-08 59.0 4.9 29 55-83 2-30 (168)
326 1aky_A Adenylate kinase; ATP:A 96.7 0.0008 2.7E-08 63.7 3.5 31 325-355 5-35 (220)
327 1v5w_A DMC1, meiotic recombina 96.7 0.0029 9.9E-08 64.3 7.8 40 49-88 118-166 (343)
328 2c95_A Adenylate kinase 1; tra 96.7 0.00077 2.6E-08 62.3 3.3 33 324-356 9-41 (196)
329 3lw7_A Adenylate kinase relate 96.7 0.00077 2.6E-08 60.9 3.2 29 326-355 3-31 (179)
330 3t61_A Gluconokinase; PSI-biol 96.7 0.0012 4.1E-08 61.5 4.4 32 324-355 18-49 (202)
331 1tev_A UMP-CMP kinase; ploop, 96.7 0.0008 2.7E-08 62.0 3.1 31 325-355 4-34 (196)
332 3dm5_A SRP54, signal recogniti 96.7 0.018 6.2E-07 59.9 13.6 36 52-87 99-137 (443)
333 3cm0_A Adenylate kinase; ATP-b 96.7 0.00079 2.7E-08 61.7 3.0 31 325-355 5-35 (186)
334 3crm_A TRNA delta(2)-isopenten 96.7 0.0026 8.8E-08 63.5 6.9 33 325-357 6-38 (323)
335 3kl4_A SRP54, signal recogniti 96.6 0.0099 3.4E-07 61.9 11.5 36 52-87 96-134 (433)
336 3a8t_A Adenylate isopentenyltr 96.6 0.0039 1.3E-07 62.4 8.1 35 53-87 40-74 (339)
337 2pez_A Bifunctional 3'-phospho 96.6 0.0017 5.9E-08 59.1 5.2 35 52-86 4-41 (179)
338 2r6a_A DNAB helicase, replicat 96.6 0.0023 8E-08 67.7 6.9 37 320-356 199-239 (454)
339 2r6a_A DNAB helicase, replicat 96.6 0.0065 2.2E-07 64.2 10.3 38 49-86 199-240 (454)
340 1ex7_A Guanylate kinase; subst 96.6 0.0017 5.7E-08 59.6 5.0 28 54-81 2-29 (186)
341 3be4_A Adenylate kinase; malar 96.6 0.00078 2.7E-08 63.7 2.7 31 325-355 6-36 (217)
342 3umf_A Adenylate kinase; rossm 96.6 0.0011 3.9E-08 62.3 3.8 40 321-362 26-65 (217)
343 1zd8_A GTP:AMP phosphotransfer 96.6 0.00082 2.8E-08 63.9 2.9 32 324-355 7-38 (227)
344 2ius_A DNA translocase FTSK; n 96.6 0.0076 2.6E-07 64.0 10.5 75 384-471 297-374 (512)
345 2pt5_A Shikimate kinase, SK; a 96.6 0.001 3.6E-08 59.8 3.4 29 327-355 3-31 (168)
346 3dl0_A Adenylate kinase; phosp 96.6 0.00099 3.4E-08 62.8 3.3 29 327-355 3-31 (216)
347 4gp7_A Metallophosphoesterase; 96.6 0.00063 2.2E-08 61.7 1.8 22 322-343 7-28 (171)
348 1nlf_A Regulatory protein REPA 96.6 0.013 4.5E-07 57.4 11.6 29 49-77 26-54 (279)
349 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0012 3.9E-08 66.6 3.7 31 325-355 25-55 (359)
350 1pzn_A RAD51, DNA repair and r 96.6 0.0078 2.7E-07 61.2 10.0 29 49-77 127-155 (349)
351 3fb4_A Adenylate kinase; psych 96.6 0.0011 3.7E-08 62.5 3.4 29 327-355 3-31 (216)
352 1ak2_A Adenylate kinase isoenz 96.6 0.0012 4E-08 63.2 3.6 31 325-355 17-47 (233)
353 3lda_A DNA repair protein RAD5 96.6 0.01 3.4E-07 61.4 10.8 40 49-88 174-222 (400)
354 1qf9_A UMP/CMP kinase, protein 96.6 0.0011 3.8E-08 60.9 3.3 31 325-355 7-37 (194)
355 1e4v_A Adenylate kinase; trans 96.6 0.0017 5.9E-08 61.1 4.7 30 55-84 2-31 (214)
356 1vma_A Cell division protein F 96.6 0.0038 1.3E-07 62.1 7.4 72 322-393 102-196 (306)
357 1zak_A Adenylate kinase; ATP:A 96.6 0.00096 3.3E-08 63.2 2.9 32 324-355 5-36 (222)
358 2v54_A DTMP kinase, thymidylat 96.5 0.0017 5.9E-08 60.3 4.6 34 52-85 3-37 (204)
359 2bwj_A Adenylate kinase 5; pho 96.5 0.001 3.5E-08 61.6 3.0 31 325-355 13-43 (199)
360 1ly1_A Polynucleotide kinase; 96.5 0.00071 2.4E-08 61.5 1.9 30 325-354 3-33 (181)
361 1kht_A Adenylate kinase; phosp 96.5 0.00093 3.2E-08 61.4 2.6 25 325-349 4-28 (192)
362 3sr0_A Adenylate kinase; phosp 96.5 0.0014 4.8E-08 61.3 3.7 34 327-362 3-36 (206)
363 1vma_A Cell division protein F 96.5 0.0068 2.3E-07 60.3 8.9 36 51-86 102-140 (306)
364 2jaq_A Deoxyguanosine kinase; 96.5 0.0019 6.6E-08 59.9 4.6 28 55-82 2-29 (205)
365 3rlf_A Maltose/maltodextrin im 96.5 0.00094 3.2E-08 68.3 2.6 27 322-348 27-53 (381)
366 1knq_A Gluconate kinase; ALFA/ 96.5 0.0015 5E-08 59.3 3.7 31 324-354 8-38 (175)
367 2vli_A Antibiotic resistance p 96.5 0.0011 3.7E-08 60.5 2.8 29 325-353 6-34 (183)
368 1vt4_I APAF-1 related killer D 96.5 0.022 7.6E-07 65.1 13.7 43 22-76 131-173 (1221)
369 2eyu_A Twitching motility prot 96.5 0.0051 1.7E-07 59.8 7.6 28 50-77 22-49 (261)
370 1ukz_A Uridylate kinase; trans 96.5 0.0013 4.4E-08 61.2 3.2 32 325-356 16-47 (203)
371 2pez_A Bifunctional 3'-phospho 96.5 0.0017 5.8E-08 59.1 3.9 37 324-360 5-44 (179)
372 4a74_A DNA repair and recombin 96.5 0.006 2.1E-07 57.7 7.9 29 49-77 21-49 (231)
373 3tlx_A Adenylate kinase 2; str 96.5 0.0013 4.6E-08 63.3 3.3 33 323-355 28-60 (243)
374 2xb4_A Adenylate kinase; ATP-b 96.5 0.0023 7.7E-08 60.7 4.8 28 55-82 2-29 (223)
375 2q6t_A DNAB replication FORK h 96.5 0.0056 1.9E-07 64.5 8.3 38 320-357 196-237 (444)
376 4eun_A Thermoresistant glucoki 96.4 0.0018 6E-08 60.3 3.9 32 323-354 28-59 (200)
377 2pbr_A DTMP kinase, thymidylat 96.4 0.0027 9.4E-08 58.3 5.0 31 55-85 2-35 (195)
378 1nks_A Adenylate kinase; therm 96.4 0.0014 4.8E-08 60.2 3.0 24 55-78 3-26 (194)
379 2px0_A Flagellar biosynthesis 96.4 0.017 5.8E-07 57.2 11.0 26 323-348 104-129 (296)
380 1cke_A CK, MSSA, protein (cyti 96.4 0.0026 9.1E-08 60.2 5.0 30 53-82 5-34 (227)
381 3r20_A Cytidylate kinase; stru 96.4 0.0028 9.7E-08 60.2 5.0 32 52-83 8-39 (233)
382 3uie_A Adenylyl-sulfate kinase 96.4 0.0032 1.1E-07 58.5 5.3 35 51-85 23-60 (200)
383 3bh0_A DNAB-like replicative h 96.4 0.009 3.1E-07 59.8 9.0 37 320-356 64-103 (315)
384 2gxq_A Heat resistant RNA depe 96.4 0.0083 2.8E-07 55.7 8.1 19 325-343 39-57 (207)
385 2plr_A DTMP kinase, probable t 96.3 0.0024 8.1E-08 59.7 4.3 28 53-80 4-31 (213)
386 2bbw_A Adenylate kinase 4, AK4 96.3 0.0026 8.8E-08 61.3 4.6 30 52-81 26-55 (246)
387 2q6t_A DNAB replication FORK h 96.3 0.0095 3.3E-07 62.8 9.4 38 49-86 196-237 (444)
388 3bh0_A DNAB-like replicative h 96.3 0.024 8.3E-07 56.6 11.9 39 48-86 63-104 (315)
389 3foz_A TRNA delta(2)-isopenten 96.3 0.0028 9.7E-08 62.5 4.8 38 52-89 9-46 (316)
390 2z0h_A DTMP kinase, thymidylat 96.3 0.003 1E-07 58.3 4.8 31 55-85 2-35 (197)
391 1e4v_A Adenylate kinase; trans 96.3 0.0017 5.7E-08 61.2 3.0 29 327-355 3-31 (214)
392 4g1u_C Hemin import ATP-bindin 96.3 0.0016 5.5E-08 63.5 2.8 27 322-348 35-61 (266)
393 1kgd_A CASK, peripheral plasma 96.3 0.0027 9.4E-08 57.9 4.2 27 52-78 4-30 (180)
394 3fvq_A Fe(3+) IONS import ATP- 96.3 0.0016 5.5E-08 66.1 2.8 112 318-442 24-202 (359)
395 2qor_A Guanylate kinase; phosp 96.3 0.0026 9.1E-08 59.3 4.0 29 51-79 10-38 (204)
396 3nwj_A ATSK2; P loop, shikimat 96.3 0.0032 1.1E-07 60.7 4.6 32 53-84 48-79 (250)
397 2ewv_A Twitching motility prot 96.3 0.0023 7.9E-08 65.7 3.8 74 320-393 132-219 (372)
398 3uie_A Adenylyl-sulfate kinase 96.2 0.0027 9.1E-08 59.1 3.9 39 322-360 23-64 (200)
399 2if2_A Dephospho-COA kinase; a 96.2 0.0025 8.6E-08 59.3 3.7 29 55-84 3-31 (204)
400 2xb4_A Adenylate kinase; ATP-b 96.2 0.0027 9.3E-08 60.2 3.7 29 327-355 3-31 (223)
401 1w36_D RECD, exodeoxyribonucle 96.2 0.0055 1.9E-07 67.3 6.6 24 325-348 165-188 (608)
402 1nks_A Adenylate kinase; therm 96.2 0.0021 7.2E-08 59.0 2.8 24 326-349 3-26 (194)
403 3nwj_A ATSK2; P loop, shikimat 96.2 0.0028 9.5E-08 61.1 3.7 33 324-356 48-80 (250)
404 2xau_A PRE-mRNA-splicing facto 96.2 0.0072 2.5E-07 68.2 7.6 60 287-347 72-132 (773)
405 2pbr_A DTMP kinase, thymidylat 96.2 0.0032 1.1E-07 57.9 3.9 30 327-356 3-35 (195)
406 3exa_A TRNA delta(2)-isopenten 96.1 0.0037 1.3E-07 61.7 4.4 37 53-89 3-39 (322)
407 2wwf_A Thymidilate kinase, put 96.1 0.0029 9.9E-08 59.2 3.5 29 52-80 9-37 (212)
408 2jaq_A Deoxyguanosine kinase; 96.1 0.0029 9.9E-08 58.7 3.5 28 327-354 3-30 (205)
409 1cke_A CK, MSSA, protein (cyti 96.1 0.0031 1E-07 59.8 3.7 29 326-354 7-35 (227)
410 1uj2_A Uridine-cytidine kinase 96.1 0.0051 1.7E-07 59.5 5.3 40 52-91 21-68 (252)
411 1z47_A CYSA, putative ABC-tran 96.1 0.0019 6.5E-08 65.5 2.2 111 319-442 36-209 (355)
412 2grj_A Dephospho-COA kinase; T 96.1 0.0043 1.5E-07 57.2 4.4 30 54-83 13-42 (192)
413 1nn5_A Similar to deoxythymidy 96.1 0.0031 1.1E-07 59.1 3.5 27 52-78 8-34 (215)
414 2v54_A DTMP kinase, thymidylat 96.1 0.0031 1.1E-07 58.5 3.5 32 325-356 5-37 (204)
415 1jjv_A Dephospho-COA kinase; P 96.1 0.0038 1.3E-07 58.1 4.0 29 54-83 3-31 (206)
416 3ake_A Cytidylate kinase; CMP 96.0 0.0054 1.9E-07 57.0 5.1 29 55-83 4-32 (208)
417 2yyz_A Sugar ABC transporter, 96.0 0.0022 7.6E-08 65.2 2.5 111 319-442 24-197 (359)
418 2if2_A Dephospho-COA kinase; a 96.0 0.0026 9E-08 59.1 2.8 30 326-356 3-32 (204)
419 1uf9_A TT1252 protein; P-loop, 96.0 0.0048 1.6E-07 57.1 4.6 30 52-82 7-36 (203)
420 3tau_A Guanylate kinase, GMP k 96.0 0.0039 1.3E-07 58.4 3.9 28 52-79 7-34 (208)
421 4e22_A Cytidylate kinase; P-lo 96.0 0.0056 1.9E-07 59.2 5.2 30 53-82 27-56 (252)
422 2zts_A Putative uncharacterize 96.0 0.012 4.2E-07 56.2 7.7 38 49-86 26-67 (251)
423 3tui_C Methionine import ATP-b 96.0 0.0028 9.4E-08 64.4 3.1 27 322-348 52-78 (366)
424 1m7g_A Adenylylsulfate kinase; 96.0 0.0054 1.8E-07 57.5 4.9 39 50-88 22-64 (211)
425 3gfo_A Cobalt import ATP-bindi 96.0 0.0027 9.2E-08 62.2 2.8 111 319-442 29-207 (275)
426 3r20_A Cytidylate kinase; stru 96.0 0.0038 1.3E-07 59.3 3.8 30 325-354 10-39 (233)
427 1w4r_A Thymidine kinase; type 96.0 0.012 3.9E-07 54.0 6.8 35 53-87 20-57 (195)
428 1vht_A Dephospho-COA kinase; s 96.0 0.0058 2E-07 57.5 5.0 30 53-83 4-33 (218)
429 3a8t_A Adenylate isopentenyltr 96.0 0.0024 8.2E-08 63.9 2.4 34 325-358 41-74 (339)
430 3thx_B DNA mismatch repair pro 96.0 0.019 6.4E-07 65.5 9.9 108 324-443 673-800 (918)
431 2grj_A Dephospho-COA kinase; T 96.0 0.0034 1.2E-07 57.9 3.3 29 327-355 15-43 (192)
432 2z0h_A DTMP kinase, thymidylat 96.0 0.0042 1.4E-07 57.2 3.9 30 327-356 3-35 (197)
433 2j41_A Guanylate kinase; GMP, 96.0 0.004 1.4E-07 57.9 3.8 27 51-77 4-30 (207)
434 2i1q_A DNA repair and recombin 96.0 0.0077 2.6E-07 60.5 6.0 28 49-76 94-121 (322)
435 1t6n_A Probable ATP-dependent 96.0 0.034 1.2E-06 52.1 10.3 60 287-348 14-75 (220)
436 2qor_A Guanylate kinase; phosp 96.0 0.0053 1.8E-07 57.2 4.5 28 322-349 10-37 (204)
437 2it1_A 362AA long hypothetical 96.0 0.0023 7.8E-08 65.2 2.1 111 319-442 24-197 (362)
438 1m7g_A Adenylylsulfate kinase; 95.9 0.011 3.7E-07 55.3 6.6 40 322-361 23-66 (211)
439 3ney_A 55 kDa erythrocyte memb 95.9 0.007 2.4E-07 55.9 5.1 27 52-78 18-44 (197)
440 2yvu_A Probable adenylyl-sulfa 95.9 0.0059 2E-07 55.9 4.5 34 52-85 12-48 (186)
441 1jjv_A Dephospho-COA kinase; P 95.8 0.0036 1.2E-07 58.4 2.7 28 326-354 4-31 (206)
442 3exa_A TRNA delta(2)-isopenten 95.8 0.013 4.4E-07 57.9 6.7 32 326-357 5-36 (322)
443 3d3q_A TRNA delta(2)-isopenten 95.8 0.0059 2E-07 61.2 4.4 32 54-85 8-39 (340)
444 1lvg_A Guanylate kinase, GMP k 95.8 0.0049 1.7E-07 57.2 3.6 27 52-78 3-29 (198)
445 2bdt_A BH3686; alpha-beta prot 95.8 0.0066 2.2E-07 55.7 4.4 26 54-79 3-28 (189)
446 1q3t_A Cytidylate kinase; nucl 95.8 0.0085 2.9E-07 57.2 5.4 32 52-83 15-46 (236)
447 3ake_A Cytidylate kinase; CMP 95.8 0.0052 1.8E-07 57.2 3.8 31 326-356 4-34 (208)
448 3foz_A TRNA delta(2)-isopenten 95.8 0.0048 1.6E-07 60.9 3.6 34 325-358 11-44 (316)
449 1rz3_A Hypothetical protein rb 95.8 0.02 6.7E-07 53.1 7.7 37 51-87 20-59 (201)
450 2pl3_A Probable ATP-dependent 95.8 0.027 9.4E-07 53.4 8.9 56 286-343 24-81 (236)
451 2h92_A Cytidylate kinase; ross 95.8 0.0073 2.5E-07 56.8 4.7 31 53-83 3-33 (219)
452 3tr0_A Guanylate kinase, GMP k 95.8 0.0064 2.2E-07 56.4 4.2 27 52-78 6-32 (205)
453 1w4r_A Thymidine kinase; type 95.8 0.0054 1.9E-07 56.2 3.5 68 325-395 21-103 (195)
454 2bbw_A Adenylate kinase 4, AK4 95.8 0.005 1.7E-07 59.3 3.5 30 324-353 27-56 (246)
455 2qt1_A Nicotinamide riboside k 95.7 0.0048 1.6E-07 57.5 3.2 31 51-81 19-50 (207)
456 3eph_A TRNA isopentenyltransfe 95.7 0.0068 2.3E-07 62.1 4.5 34 53-86 2-35 (409)
457 1hv8_A Putative ATP-dependent 95.7 0.015 5E-07 59.1 7.0 70 287-357 6-82 (367)
458 3b6e_A Interferon-induced heli 95.7 0.025 8.5E-07 52.6 8.1 24 325-348 49-72 (216)
459 3d31_A Sulfate/molybdate ABC t 95.7 0.0031 1E-07 63.9 1.8 111 319-442 21-191 (348)
460 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.003 1E-07 63.7 1.7 71 323-393 170-250 (330)
461 3b9q_A Chloroplast SRP recepto 95.7 0.012 4.2E-07 58.4 6.1 28 50-77 97-124 (302)
462 3bgw_A DNAB-like replicative h 95.7 0.048 1.6E-06 57.2 11.0 39 49-87 193-234 (444)
463 2axn_A 6-phosphofructo-2-kinas 95.7 0.015 5.3E-07 62.3 7.3 37 52-88 34-73 (520)
464 2yvu_A Probable adenylyl-sulfa 95.7 0.0078 2.7E-07 55.0 4.4 38 323-360 12-52 (186)
465 2wwf_A Thymidilate kinase, put 95.7 0.0026 8.9E-08 59.5 1.1 28 324-351 10-37 (212)
466 1nn5_A Similar to deoxythymidy 95.7 0.0026 8.9E-08 59.6 1.1 27 324-350 9-35 (215)
467 1uf9_A TT1252 protein; P-loop, 95.7 0.0046 1.6E-07 57.3 2.7 30 325-355 9-38 (203)
468 3a00_A Guanylate kinase, GMP k 95.7 0.0062 2.1E-07 55.8 3.6 25 54-78 2-26 (186)
469 1ltq_A Polynucleotide kinase; 95.6 0.0067 2.3E-07 60.2 4.0 24 54-77 3-26 (301)
470 2plr_A DTMP kinase, probable t 95.6 0.0053 1.8E-07 57.2 3.1 27 325-351 5-31 (213)
471 3bgw_A DNAB-like replicative h 95.6 0.028 9.6E-07 59.0 8.8 38 320-357 193-233 (444)
472 1uj2_A Uridine-cytidine kinase 95.6 0.0077 2.6E-07 58.2 4.1 38 325-362 23-68 (252)
473 3llm_A ATP-dependent RNA helic 95.6 0.028 9.6E-07 53.5 8.1 21 325-345 77-97 (235)
474 2f6r_A COA synthase, bifunctio 95.6 0.0092 3.2E-07 58.7 4.7 30 53-83 75-104 (281)
475 4e22_A Cytidylate kinase; P-lo 95.6 0.0077 2.6E-07 58.2 4.1 30 325-354 28-57 (252)
476 2og2_A Putative signal recogni 95.6 0.012 4.2E-07 59.7 5.7 28 50-77 154-181 (359)
477 3e70_C DPA, signal recognition 95.6 0.054 1.8E-06 54.3 10.3 27 322-348 127-153 (328)
478 3asz_A Uridine kinase; cytidin 95.5 0.01 3.5E-07 55.4 4.7 35 52-86 5-39 (211)
479 3ice_A Transcription terminati 95.5 0.023 7.8E-07 57.6 7.4 27 51-77 172-198 (422)
480 1htw_A HI0065; nucleotide-bind 95.5 0.01 3.5E-07 52.8 4.4 29 49-77 29-57 (158)
481 3d3q_A TRNA delta(2)-isopenten 95.5 0.0062 2.1E-07 61.1 3.2 32 326-357 9-40 (340)
482 3thx_A DNA mismatch repair pro 95.5 0.043 1.5E-06 62.8 10.5 22 325-346 663-684 (934)
483 2h92_A Cytidylate kinase; ross 95.5 0.0076 2.6E-07 56.7 3.7 31 325-355 4-34 (219)
484 3zvl_A Bifunctional polynucleo 95.5 0.014 4.7E-07 60.9 6.0 33 323-355 257-289 (416)
485 1z6g_A Guanylate kinase; struc 95.5 0.0082 2.8E-07 56.6 3.8 28 50-77 20-47 (218)
486 1p9r_A General secretion pathw 95.5 0.033 1.1E-06 57.8 8.6 69 325-393 168-246 (418)
487 2qmh_A HPR kinase/phosphorylas 95.4 0.0072 2.5E-07 55.5 3.1 32 53-85 34-65 (205)
488 1kgd_A CASK, peripheral plasma 95.4 0.0071 2.4E-07 55.1 3.1 25 325-349 6-30 (180)
489 3zvl_A Bifunctional polynucleo 95.4 0.007 2.4E-07 63.1 3.4 36 52-89 257-292 (416)
490 1vht_A Dephospho-COA kinase; s 95.4 0.0073 2.5E-07 56.8 3.2 30 325-355 5-34 (218)
491 4b3f_X DNA-binding protein smu 95.4 0.019 6.6E-07 63.5 7.1 48 24-86 191-241 (646)
492 1q3t_A Cytidylate kinase; nucl 95.4 0.0097 3.3E-07 56.8 4.0 31 324-354 16-46 (236)
493 3c8u_A Fructokinase; YP_612366 95.4 0.0091 3.1E-07 55.7 3.7 28 51-78 20-47 (208)
494 2j41_A Guanylate kinase; GMP, 95.4 0.0063 2.2E-07 56.5 2.6 27 322-348 4-30 (207)
495 2qt1_A Nicotinamide riboside k 95.4 0.0056 1.9E-07 57.1 2.1 32 324-355 21-53 (207)
496 1ex7_A Guanylate kinase; subst 95.3 0.0097 3.3E-07 54.4 3.6 28 325-352 2-29 (186)
497 1q57_A DNA primase/helicase; d 95.3 0.021 7.2E-07 61.2 6.8 111 320-436 238-401 (503)
498 2yhs_A FTSY, cell division pro 95.3 0.037 1.3E-06 58.3 8.3 100 291-390 260-382 (503)
499 4a1f_A DNAB helicase, replicat 95.3 0.048 1.6E-06 54.8 8.9 38 49-86 42-82 (338)
500 2v9p_A Replication protein E1; 95.3 0.012 4.2E-07 58.2 4.5 34 48-81 121-154 (305)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.7e-90 Score=771.87 Aligned_cols=529 Identities=44% Similarity=0.778 Sum_probs=437.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~ 95 (611)
..+++|+|++++++.|++.+..|+.+++.+..+|..+|+++||+||||||||++|+++|++++.+++.++++++.+.+.|
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccc
Q 007255 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA 174 (611)
Q Consensus 96 ~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~ 174 (611)
+++..++.+|..+... .||||||||+|.+++.++. .++...++.++|+..|+..... .+|++|++||.++.
T Consensus 281 ese~~lr~lF~~A~~~----~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~----~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 281 ESESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR----AHVIVMAATNRPNS 352 (806)
T ss_dssp HHHHHHHHHHHHHTTS----CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG----GCEEEEEECSSTTT
T ss_pred HHHHHHHHHHHHHHHc----CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc----CCEEEEEecCChhh
Confidence 9999999999998754 5999999999999987753 3455678899999999986542 36999999999999
Q ss_pred ccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhccccc--
Q 007255 175 IDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDAN-- 252 (611)
Q Consensus 175 l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~-- 252 (611)
+|++++|+|||+.+|+++.|+.++|.+||+.+++......+.++..++..|+||+|.||..+|++|...++++..+..
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999999999888899999999999999999999999999999888754321
Q ss_pred -------ccccccchhHHHHHHHHhccCCcccccccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCC
Q 007255 253 -------ECAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVR 325 (611)
Q Consensus 253 -------~~~~~~~v~~ed~~~a~~~i~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (611)
+......++.+||..+...+.|+..+......|.++|++++|++++|+.|++.+.+|+.+++.|.++|..+++
T Consensus 433 ~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~ 512 (806)
T 3cf2_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSK 512 (806)
T ss_dssp TCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCS
T ss_pred cccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCc
Confidence 1113456788999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCC
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST 405 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~ 405 (611)
++|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..|+...||||||||+|.++++|+...+.
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~ 592 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------
T ss_pred eEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999765555
Q ss_pred CcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccH
Q 007255 406 SITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDL 485 (611)
Q Consensus 406 ~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~ 485 (611)
.....++++++||.+||++...++++||+|||+|+.||+|++||||||++|+||+|+.++|.+||+.++++.++..++|+
T Consensus 593 ~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl 672 (806)
T 3cf2_A 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL 672 (806)
T ss_dssp -----CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---
T ss_pred CchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH
Confidence 55667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccc-----------------------ccccHHHHHHHHhhcCCCCCHHHH
Q 007255 486 RSIAEETELFTGAELEGLCREAGIVALREDISA-----------------------TAVRNRHFQTVKDSLKPALTKEEI 542 (611)
Q Consensus 486 ~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~-----------------------~~i~~~~~~~~l~~~~~~~~~~~~ 542 (611)
+.||+.|+||||+||.++|++|+..|+++.+.. .+|+..||..|+.+++|+++++++
T Consensus 673 ~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l 752 (806)
T 3cf2_A 673 EFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDI 752 (806)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC------------
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHH
Confidence 999999999999999999999999999886532 258999999999999999999999
Q ss_pred HHHHHHhhcC
Q 007255 543 DSYSSFMKSQ 552 (611)
Q Consensus 543 ~~~~~~~~~~ 552 (611)
++|++|.++.
T Consensus 753 ~~y~~~~~~f 762 (806)
T 3cf2_A 753 RKYEMFAQTL 762 (806)
T ss_dssp ---CCCC---
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=5.4e-67 Score=595.06 Aligned_cols=529 Identities=44% Similarity=0.777 Sum_probs=448.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~ 95 (611)
..+++|+|++++++.|.+.+..|+.+++.+..+++.++.++||+||||||||++++++|..++.+++.+++.++...+.+
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g 280 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhh
Confidence 46699999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccc
Q 007255 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA 174 (611)
Q Consensus 96 ~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~ 174 (611)
.....+..+|..+... .|+++||||+|.+++.+.. ..+...+++..++.+++..... ..+++|++||+++.
T Consensus 281 ~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~----~~v~vI~atn~~~~ 352 (806)
T 1ypw_A 281 ESESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR----AHVIVMAATNRPNS 352 (806)
T ss_dssp HHHHHHHHHHHHHHHH----CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT----SCCEEEEECSCTTT
T ss_pred hHHHHHHHHHHHHHhc----CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc----ccEEEecccCCchh
Confidence 9999999999988755 4899999999999887643 3445667888999999875532 35899999999999
Q ss_pred ccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhccccc--
Q 007255 175 IDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDAN-- 252 (611)
Q Consensus 175 l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~-- 252 (611)
+++++++++||...+.++.|+.++|.+|++.++.......+.++..++..+.|+++.++..++.++...++++.....
T Consensus 353 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~ 432 (806)
T 1ypw_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred cCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccch
Confidence 999999999999999999999999999999999988888888899999999999999999999999988777543321
Q ss_pred -------ccccccchhHHHHHHHHhccCCcccccccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCC
Q 007255 253 -------ECAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVR 325 (611)
Q Consensus 253 -------~~~~~~~v~~ed~~~a~~~i~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (611)
.......++.+++..+.....+...+......+.++|++++|++.+++.+.+.+.+++.++..+.+++..++.
T Consensus 433 ~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~ 512 (806)
T 1ypw_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSK 512 (806)
T ss_dssp HHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCC
T ss_pred hhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCc
Confidence 1112345677788888888888877777778899999999999999999999999999999999999999999
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCC
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST 405 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~ 405 (611)
++||+||||||||++|+++|.+++.+++.++++++.++|.|+.+..++.+|+.++...|+|+||||+|.+.+.++...+.
T Consensus 513 ~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~ 592 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592 (806)
T ss_dssp CCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSH
T ss_pred eeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888655444
Q ss_pred CcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccH
Q 007255 406 SITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDL 485 (611)
Q Consensus 406 ~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~ 485 (611)
......+++++||..|+++....+++||+|||+|+.+|++++|||||+..|+|++|+.++|.+||+.++++.++..++++
T Consensus 593 ~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l 672 (806)
T 1ypw_A 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL 672 (806)
T ss_dssp HHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCC
T ss_pred cchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCH
Confidence 44567899999999999998888999999999999999999999999999999999999999999999999988889999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccc-----------------------ccccHHHHHHHHhhcCCCCCHHHH
Q 007255 486 RSIAEETELFTGAELEGLCREAGIVALREDISA-----------------------TAVRNRHFQTVKDSLKPALTKEEI 542 (611)
Q Consensus 486 ~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~-----------------------~~i~~~~~~~~l~~~~~~~~~~~~ 542 (611)
..+++.++|||+++|.++|++|...|.++.+.. .+|+..||..++...+|+++.+++
T Consensus 673 ~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~ 752 (806)
T 1ypw_A 673 EFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDI 752 (806)
T ss_dssp SCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------------------------CCTTTTTTSSCCCCCC----------
T ss_pred HHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHH
Confidence 999999999999999999999999999876532 358899999999999999999999
Q ss_pred HHHHHHhhcC
Q 007255 543 DSYSSFMKSQ 552 (611)
Q Consensus 543 ~~~~~~~~~~ 552 (611)
+.|++|.+..
T Consensus 753 ~~ye~~~~~~ 762 (806)
T 1ypw_A 753 RKYEMFAQTL 762 (806)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-53 Score=437.62 Aligned_cols=261 Identities=39% Similarity=0.686 Sum_probs=245.5
Q ss_pred CCcccccccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcE
Q 007255 273 GPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF 352 (611)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~ 352 (611)
.|........+.|.++|+||+|++++|+.|++.+.+|+.+|+.|.++|.++|+|+|||||||||||++|+|+|++++++|
T Consensus 131 ~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f 210 (405)
T 4b4t_J 131 DPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF 210 (405)
T ss_dssp SCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE
T ss_pred CchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc
Confidence 45555566677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEE
Q 007255 353 FSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILV 432 (611)
Q Consensus 353 ~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 432 (611)
+.++++++.++|+|+++..++.+|..|+..+||||||||+|.++++|+..+++......+.+++||.+||++...++++|
T Consensus 211 ~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~v 290 (405)
T 4b4t_J 211 IRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKI 290 (405)
T ss_dssp EEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEE
T ss_pred eEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 99999999999999999999999999999999999999999999998766655555667899999999999999999999
Q ss_pred EEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007255 433 LAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVAL 512 (611)
Q Consensus 433 I~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~ 512 (611)
|+|||+|+.||||++||||||+.|+||+||.++|.+||+.+++++++..++|++.||+.|+||||+||.++|++|+..|+
T Consensus 291 IaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 291 IMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp EEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhcccccccHHHHHHHHhhcCC
Q 007255 513 REDISATAVRNRHFQTVKDSLKP 535 (611)
Q Consensus 513 ~~~~~~~~i~~~~~~~~l~~~~~ 535 (611)
++. ...++.+||..|+.++.+
T Consensus 371 r~~--~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 371 RER--RIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HTT--CSBCCHHHHHHHHHHHHH
T ss_pred HcC--CCCcCHHHHHHHHHHHhC
Confidence 874 567999999999987754
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-51 Score=424.25 Aligned_cols=257 Identities=35% Similarity=0.633 Sum_probs=241.7
Q ss_pred cccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecch
Q 007255 279 GVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA 358 (611)
Q Consensus 279 ~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~ 358 (611)
......|.++|+||+|++++|+.|++.+.+|+.+++.|.++|.++++|+|||||||||||++|+|+|++++++|+.++++
T Consensus 171 ~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp CEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred eeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 007255 359 ELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNR 438 (611)
Q Consensus 359 ~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 438 (611)
++.++|+|+++..++.+|..|+..+||||||||+|.++++|+..++.......+.+++||..||++...++++||+|||+
T Consensus 251 ~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNr 330 (437)
T 4b4t_I 251 ELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNK 330 (437)
T ss_dssp GGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESC
T ss_pred HhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999766665556667889999999999999999999999999
Q ss_pred CcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccc
Q 007255 439 PHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISA 518 (611)
Q Consensus 439 ~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~ 518 (611)
|+.||+|++||||||++|+|++||.++|.+||+.+++++++..++|++.||+.|+||||+||+++|++|+..|+++. .
T Consensus 331 pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~--~ 408 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER--R 408 (437)
T ss_dssp STTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT--C
T ss_pred hhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875 5
Q ss_pred ccccHHHHHHHHhhcCCCC
Q 007255 519 TAVRNRHFQTVKDSLKPAL 537 (611)
Q Consensus 519 ~~i~~~~~~~~l~~~~~~~ 537 (611)
..|+.+||..|+.++.+..
T Consensus 409 ~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 409 MQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp SCBCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHhCCC
Confidence 6799999999998776543
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-50 Score=423.35 Aligned_cols=265 Identities=33% Similarity=0.576 Sum_probs=244.8
Q ss_pred cccccccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEe
Q 007255 275 SITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (611)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~ 354 (611)
..........|.++|+||+|++++++.|.+.+.+|+.+++.|.++|+++++|+|||||||||||++|+|+|++++++|+.
T Consensus 166 ~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~ 245 (437)
T 4b4t_L 166 LVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245 (437)
T ss_dssp CCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred hhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 33344455678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEE
Q 007255 355 LSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLA 434 (611)
Q Consensus 355 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~ 434 (611)
++++++.++|+|+++..++.+|..|+...||||||||+|.++++|+..+........+.+++||..||++...++++||+
T Consensus 246 v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ 325 (437)
T 4b4t_L 246 SPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIM 325 (437)
T ss_dssp EEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEE
T ss_pred EehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999876665555566788999999999999999999999
Q ss_pred ecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007255 435 ATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALRE 514 (611)
Q Consensus 435 ~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~ 514 (611)
|||+|+.||||++||||||+.|+||+||.++|.+||+.++++++...++|++.+|+.|+||||+||.++|++|+..|+++
T Consensus 326 ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~ 405 (437)
T 4b4t_L 326 ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD 405 (437)
T ss_dssp EESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred ecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hcccccccHHHHHHHHhhcCCCCCHHH
Q 007255 515 DISATAVRNRHFQTVKDSLKPALTKEE 541 (611)
Q Consensus 515 ~~~~~~i~~~~~~~~l~~~~~~~~~~~ 541 (611)
. ...|+.+||..|++++.|....+.
T Consensus 406 ~--~~~i~~~d~~~Al~~v~~~~k~e~ 430 (437)
T 4b4t_L 406 D--RDHINPDDLMKAVRKVAEVKKLEG 430 (437)
T ss_dssp T--CSSBCHHHHHHHHHHHHHTCC---
T ss_pred C--CCCCCHHHHHHHHHHHHhccCccc
Confidence 5 457999999999998877655443
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-50 Score=419.65 Aligned_cols=252 Identities=38% Similarity=0.642 Sum_probs=239.1
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~ 361 (611)
.+.|.++|+||+|++++|+.|++.+.+|+.+++.|.++|+++++|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcc
Q 007255 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHA 441 (611)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 441 (611)
++|+|++++.++.+|..|+..+||||||||+|.++++|+..+++......+.++++|.+||++...++++||+|||+|+.
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 99999999999999999999999999999999999998776665556667889999999999999999999999999999
Q ss_pred cchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Q 007255 442 IDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAV 521 (611)
Q Consensus 442 ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i 521 (611)
||+|++||||||++|+|++|+.++|.+||+.+++++++..+++++.||+.|+||||+||+++|++|+..|+++. ...+
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~--~~~i 438 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR--RKVA 438 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT--CSSB
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC--CCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998875 5679
Q ss_pred cHHHHHHHHhhcCC
Q 007255 522 RNRHFQTVKDSLKP 535 (611)
Q Consensus 522 ~~~~~~~~l~~~~~ 535 (611)
+..||..|+.++.+
T Consensus 439 t~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 439 TEKDFLKAVDKVIS 452 (467)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987643
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-50 Score=420.92 Aligned_cols=262 Identities=36% Similarity=0.617 Sum_probs=243.9
Q ss_pred cccccccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEe
Q 007255 275 SITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (611)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~ 354 (611)
..........|.++|+||+|++++|+.|++.+.+|+.+++.|.++|.++++|+|||||||||||++|+|+|++++++|+.
T Consensus 166 ~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 166 RVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp SCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred hhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 33334445678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEE
Q 007255 355 LSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLA 434 (611)
Q Consensus 355 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~ 434 (611)
++++++.++|+|++++.++.+|..|+...||||||||+|.++++|....+.......+.+++||+.||++...++++||+
T Consensus 246 v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIa 325 (434)
T 4b4t_M 246 LAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLA 325 (434)
T ss_dssp EEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEE
T ss_pred EehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999876555444556778899999999999999999999
Q ss_pred ecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007255 435 ATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALRE 514 (611)
Q Consensus 435 ~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~ 514 (611)
|||+|+.||||++||||||++|+||+||.++|.+||+.++++++...+++++.||+.|+||||+||.++|++|+..|+++
T Consensus 326 aTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 326 ATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN 405 (434)
T ss_dssp ECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred eCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hcccccccHHHHHHHHhhcCCCCC
Q 007255 515 DISATAVRNRHFQTVKDSLKPALT 538 (611)
Q Consensus 515 ~~~~~~i~~~~~~~~l~~~~~~~~ 538 (611)
. ...|+.+||..|+.+++|..+
T Consensus 406 ~--~~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 406 G--QSSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp T--CSSBCHHHHHHHHHSCSSSCC
T ss_pred C--CCCcCHHHHHHHHHHHhCCCC
Confidence 5 567999999999999888643
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-49 Score=415.06 Aligned_cols=257 Identities=36% Similarity=0.602 Sum_probs=240.6
Q ss_pred cccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhh
Q 007255 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (611)
Q Consensus 281 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~ 360 (611)
....|.++|+||+|++++|+.|.+.+.+|+.+++.|.++|.++++|+|||||||||||++|+|+|++++++|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCc
Q 007255 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPH 440 (611)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 440 (611)
.++|+|+++..++.+|..|+...|||+||||+|.++++|............+++++||++||++....+++||+|||+|+
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999999999876666555667899999999999999999999999999999
Q ss_pred ccchhccCCCCccceeecC-CCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccc
Q 007255 441 AIDAALMRPGRFDLVLYVP-PPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISAT 519 (611)
Q Consensus 441 ~ld~al~r~gRf~~~i~~~-~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~ 519 (611)
.||||++||||||..|+|| +|+.++|..||+.+++++++..++|++.+|..|+||||+||.++|++|+..|+++. ..
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--~~ 400 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--RY 400 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--CS
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC--CC
Confidence 9999999999999999997 89999999999999999999999999999999999999999999999999999875 56
Q ss_pred cccHHHHHHHHhh-cCCCCCH
Q 007255 520 AVRNRHFQTVKDS-LKPALTK 539 (611)
Q Consensus 520 ~i~~~~~~~~l~~-~~~~~~~ 539 (611)
.++..||..|+.+ +++..+.
T Consensus 401 ~i~~~d~~~A~~~~~~~~~~~ 421 (428)
T 4b4t_K 401 VILQSDLEEAYATQVKTDNTV 421 (428)
T ss_dssp SBCHHHHHHHHHHHSCSCCCS
T ss_pred CCCHHHHHHHHHHhhCccCCc
Confidence 7999999999865 4554443
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-41 Score=349.12 Aligned_cols=251 Identities=33% Similarity=0.577 Sum_probs=225.8
Q ss_pred ccccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 4 KGRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 4 ~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
.+.+.+.+++.| +||+|++++|+.|++.+..|+.+++.+..+|+++|+++|||||||||||++|+++|.+++.+|+.
T Consensus 136 ~~~~~~~p~v~~---~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 136 LMMVEKVPDSTY---DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp SCEEECSCSCCG---GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred hccccCCCCCCH---HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 345667788888 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCc----hhhHHHHHHHHHHHhcCCCCCCC
Q 007255 84 ISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR----EQDVRIASQLFTLMDSNKPSKTS 159 (611)
Q Consensus 84 v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~ 159 (611)
++++++.+.+.|+++..++.+|..+.... ||||||||+|.+++.+.... ....+.+.+|++.||.....
T Consensus 213 v~~s~l~sk~vGese~~vr~lF~~Ar~~a----P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--- 285 (405)
T 4b4t_J 213 VSGAELVQKYIGEGSRMVRELFVMAREHA----PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--- 285 (405)
T ss_dssp EEGGGGSCSSTTHHHHHHHHHHHHHHHTC----SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC---
T ss_pred EEhHHhhccccchHHHHHHHHHHHHHHhC----CceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC---
Confidence 99999999999999999999999998664 99999999999998764322 23346778899999976542
Q ss_pred CCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHH
Q 007255 160 VPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCRE 239 (611)
Q Consensus 160 ~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~ 239 (611)
.+|++|+|||.++.+||+++|+|||+..|+|+.|+.++|.+||+.++++..+..+.++..+|..|+||+|+||.++|++
T Consensus 286 -~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~e 364 (405)
T 4b4t_J 286 -KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTE 364 (405)
T ss_dssp -CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred -CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHH
Confidence 3699999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccchhHHHHHHHHhccC
Q 007255 240 ATMSAVKRSSDANECAGVLSVTMEDWRHARSVVG 273 (611)
Q Consensus 240 a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~ 273 (611)
|...++++.. ..++.+||..|...+.
T Consensus 365 A~~~Air~~~--------~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 365 AGMYALRERR--------IHVTQEDFELAVGKVM 390 (405)
T ss_dssp HHHHHHHTTC--------SBCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--------CCcCHHHHHHHHHHHh
Confidence 9999887532 3588999998877653
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.8e-41 Score=342.81 Aligned_cols=273 Identities=42% Similarity=0.803 Sum_probs=250.0
Q ss_pred cccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecch
Q 007255 279 GVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA 358 (611)
Q Consensus 279 ~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~ 358 (611)
......|.++|++|+|++.+++.|.+.+.+|+.+++.|..++..+++++||+||||||||++|+++|++++.+++.++++
T Consensus 4 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~ 83 (301)
T 3cf0_A 4 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 83 (301)
T ss_dssp CCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHH
T ss_pred cccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 007255 359 ELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNR 438 (611)
Q Consensus 359 ~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 438 (611)
++.++|.|..+..++.+|..++...|+||||||+|.+...++...........+++++|+..|+++....+++||+|||+
T Consensus 84 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~ 163 (301)
T 3cf0_A 84 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 163 (301)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESC
T ss_pred HHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999998877544333334556889999999999888889999999999
Q ss_pred CcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc-
Q 007255 439 PHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDIS- 517 (611)
Q Consensus 439 ~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~- 517 (611)
|+.+|++++|+|||+..++++.|+.++|.+|++.++++.+...+++++.++..+.||||+||.++|++|...+..+.+.
T Consensus 164 ~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~ 243 (301)
T 3cf0_A 164 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIES 243 (301)
T ss_dssp GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999888888899999999999999999999999999998876541
Q ss_pred ----------------------cccccHHHHHHHHhhcCCCCCHHHHHHHHHHhhc
Q 007255 518 ----------------------ATAVRNRHFQTVKDSLKPALTKEEIDSYSSFMKS 551 (611)
Q Consensus 518 ----------------------~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 551 (611)
..+++..||..|+...+|+++.++++.|++|.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~ 299 (301)
T 3cf0_A 244 EIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQT 299 (301)
T ss_dssp HC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 1368999999999999999999999999999865
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.8e-42 Score=381.90 Aligned_cols=252 Identities=43% Similarity=0.697 Sum_probs=235.5
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~ 361 (611)
...|.++|+||+|++++++.|++.+.+|+.+++.|.++|..+|+|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcc
Q 007255 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHA 441 (611)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 441 (611)
++|.|+++..++.+|..|+..+||||||||+|.|+++|+... ....++++++|+..|+++...++++||+|||+|+.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 999999999999999999999999999999999999886433 24567899999999999988899999999999999
Q ss_pred cchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc----
Q 007255 442 IDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDIS---- 517 (611)
Q Consensus 442 ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~---- 517 (611)
+|++++|||||++.|+++.|+.++|.+||+.++++.+...++++..+|..|+||+++||..+|++|...|+++...
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887542
Q ss_pred -----------cccccHHHHHHHHhhcCCC
Q 007255 518 -----------ATAVRNRHFQTVKDSLKPA 536 (611)
Q Consensus 518 -----------~~~i~~~~~~~~l~~~~~~ 536 (611)
...++.+||..++..++|+
T Consensus 433 ~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps 462 (806)
T 3cf2_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp TCCCCSHHHHHHCEECTTHHHHHHSSSSCC
T ss_pred cccccchhhhccceeeHHHHHHHHHhCCCc
Confidence 2347888999999888765
No 12
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-41 Score=344.40 Aligned_cols=251 Identities=31% Similarity=0.546 Sum_probs=225.5
Q ss_pred cccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 5 GRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 5 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
+.+.+.+++.| ++|+|++++|+.|.+.+..|+.+++.+...|+++|+++|||||||||||++|+++|.+++.+|+.+
T Consensus 171 ~~~~~~p~v~~---~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 171 MKMDKSPTESY---SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CEEESSCCCCG---GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred eeeccCCCCcc---eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 45667788888 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCc----hhhHHHHHHHHHHHhcCCCCCCCC
Q 007255 85 SPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR----EQDVRIASQLFTLMDSNKPSKTSV 160 (611)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~ 160 (611)
+++++.+.+.|+++..++.+|..+... .||||||||+|.+++.+.... ........++++.+|.....
T Consensus 248 ~~s~l~sk~vGesek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~---- 319 (437)
T 4b4t_I 248 VGSELIQKYLGDGPRLCRQIFKVAGEN----APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR---- 319 (437)
T ss_dssp ESGGGCCSSSSHHHHHHHHHHHHHHHT----CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS----
T ss_pred EHHHhhhccCchHHHHHHHHHHHHHhc----CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC----
Confidence 999999999999999999999998865 499999999999998774322 23346677888888875432
Q ss_pred CcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHH
Q 007255 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREA 240 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a 240 (611)
.+|+||+|||.++.|||+++|+|||+..|+|+.|+.++|.+||+.++.+..+..+++++.+|..|+||+|+||.++|++|
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA 399 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEA 399 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHhhhcccccccccccchhHHHHHHHHhccCC
Q 007255 241 TMSAVKRSSDANECAGVLSVTMEDWRHARSVVGP 274 (611)
Q Consensus 241 ~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~ 274 (611)
...++++.. ..++.+||..|...+.+
T Consensus 400 ~~~Air~~~--------~~It~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 400 GLLALRERR--------MQVTAEDFKQAKERVMK 425 (437)
T ss_dssp HHHHHHTTC--------SCBCHHHHHHHHHHHHH
T ss_pred HHHHHHcCC--------CccCHHHHHHHHHHHhC
Confidence 999987543 35889999998876544
No 13
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-40 Score=344.45 Aligned_cols=256 Identities=33% Similarity=0.563 Sum_probs=228.4
Q ss_pred cccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 5 GRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 5 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
+.+.+.+++.| ++|+|++++|+.|.+.+..|+.+++.+...|+++|+++|||||||||||++|+++|.+++.+++.+
T Consensus 170 ~~~~~~p~~t~---~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 170 MEVDEKPTETY---SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CEEESSCSCCG---GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred cccCCCCCCCh---HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34455677777 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCch----hhHHHHHHHHHHHhcCCCCCCCC
Q 007255 85 SPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRRE----QDVRIASQLFTLMDSNKPSKTSV 160 (611)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~ 160 (611)
+++++.+.+.|+++..++.+|..+.... ||||||||+|.+++.+..... .......+|++.||.....
T Consensus 247 ~~s~l~~~~vGese~~ir~lF~~A~~~a----P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~---- 318 (434)
T 4b4t_M 247 AAPQLVQMYIGEGAKLVRDAFALAKEKA----PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD---- 318 (434)
T ss_dssp EGGGGCSSCSSHHHHHHHHHHHHHHHHC----SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS----
T ss_pred ehhhhhhcccchHHHHHHHHHHHHHhcC----CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC----
Confidence 9999999999999999999999988764 999999999999987743322 2345667888888876542
Q ss_pred CcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHH
Q 007255 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREA 240 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a 240 (611)
.+|+||+|||.++.+||+++|+|||+..|+|+.|+.++|.+||+.++++.....++++..+|..|+||+|+||.++|++|
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA 398 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEA 398 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHhhhcccccccccccchhHHHHHHHHhccCCccccc
Q 007255 241 TMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSITRG 279 (611)
Q Consensus 241 ~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~~~~~~ 279 (611)
...++++.. ..++.+||..+...+.+...+.
T Consensus 399 ~~~a~r~~~--------~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 399 GMIALRNGQ--------SSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp HHHHHHHTC--------SSBCHHHHHHHHHSCSSSCCCC
T ss_pred HHHHHHcCC--------CCcCHHHHHHHHHHHhCCCCcC
Confidence 999887643 2588999999999888765543
No 14
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-40 Score=340.17 Aligned_cols=249 Identities=33% Similarity=0.550 Sum_probs=223.4
Q ss_pred cccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 5 GRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 5 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
+.|.+.+++.| +||+|++++|+.|++.+..|+.+++.+..+|+++|+++|||||||||||++|+++|++++.+|+.+
T Consensus 198 m~v~e~P~vt~---~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 198 MTVEEKPDVTY---SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CEEESSCSCCC---SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred eeecCCCCCCH---HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 55677888888 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCc----hhhHHHHHHHHHHHhcCCCCCCCC
Q 007255 85 SPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR----EQDVRIASQLFTLMDSNKPSKTSV 160 (611)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~ 160 (611)
+++++.+.+.|+++..++.+|..+... .||||||||+|.++..+.... ........+++..|+.... .
T Consensus 275 s~s~L~sk~vGesek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~----~ 346 (467)
T 4b4t_H 275 IGSELVQKYVGEGARMVRELFEMARTK----KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP----R 346 (467)
T ss_dssp EGGGGCCCSSSHHHHHHHHHHHHHHHT----CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC----T
T ss_pred EhHHhhcccCCHHHHHHHHHHHHHHhc----CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC----C
Confidence 999999999999999999999998865 499999999999998764322 2234566778888886543 3
Q ss_pred CcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHH
Q 007255 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREA 240 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a 240 (611)
.+|++|+|||+++.||++++|+|||+.+|+|+.|+.++|.+||+.+++...+..+++++.++..|.||+|+||.++|++|
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA 426 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEA 426 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHhhhcccccccccccchhHHHHHHHHhcc
Q 007255 241 TMSAVKRSSDANECAGVLSVTMEDWRHARSVV 272 (611)
Q Consensus 241 ~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i 272 (611)
...++++.. ..++.+||..+...+
T Consensus 427 a~~Air~~~--------~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 427 GMFAIRARR--------KVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHTC--------SSBCHHHHHHHHHHH
T ss_pred HHHHHHcCC--------CccCHHHHHHHHHHH
Confidence 999887643 247888998887654
No 15
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-40 Score=344.18 Aligned_cols=252 Identities=34% Similarity=0.552 Sum_probs=225.6
Q ss_pred cccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 5 GRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 5 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
+.+.+.+++.| ++|+|++++|+.|.+.+..|+.+++.|..+|+++|+++|||||||||||++|+++|.+++.+++.+
T Consensus 170 ~~~~~~p~v~~---~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 170 MTSFEQGEITF---DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CEEEESCSSCS---GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred eeeccCCCCCh---hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 45566778888 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCc----hhhHHHHHHHHHHHhcCCCCCCCC
Q 007255 85 SPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR----EQDVRIASQLFTLMDSNKPSKTSV 160 (611)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~ 160 (611)
+++++.+.+.|+++..++.+|..+... .||||||||+|.+++.+...+ ......+.+|+..||+....
T Consensus 247 ~~s~l~sk~~Gese~~ir~~F~~A~~~----~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~---- 318 (437)
T 4b4t_L 247 PASGIVDKYIGESARIIREMFAYAKEH----EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL---- 318 (437)
T ss_dssp EGGGTCCSSSSHHHHHHHHHHHHHHHS----CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT----
T ss_pred ehhhhccccchHHHHHHHHHHHHHHhc----CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC----
Confidence 999999999999999999999998865 499999999999998764321 22345678899999976543
Q ss_pred CcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHH
Q 007255 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREA 240 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a 240 (611)
.+++||+|||.++.+||+++|+|||+..|+|+.|+.++|.+||+.++.+.....+.++..++..|+||+|+||.++|++|
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA 398 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEA 398 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHH
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred HHHHhhhcccccccccccchhHHHHHHHHhccCCc
Q 007255 241 TMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPS 275 (611)
Q Consensus 241 ~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~~ 275 (611)
...++++.. ..++.+||..+...+.+.
T Consensus 399 ~~~air~~~--------~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 399 GFFAIRDDR--------DHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHTTC--------SSBCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC--------CCCCHHHHHHHHHHHHhc
Confidence 999987543 258899999988766543
No 16
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.5e-40 Score=335.33 Aligned_cols=265 Identities=35% Similarity=0.605 Sum_probs=240.3
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-CCcEEeecchhh
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-EASFFSLSGAEL 360 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-~~~~~~~~~~~~ 360 (611)
...|.++|++|+|++.+++.|.+.+.+|+.+++.|.. +..+++++|||||||||||++|+++|+++ +.+++.++++++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 3567899999999999999999999999999998874 35677999999999999999999999999 899999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-CCCCeEEEEecCCC
Q 007255 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-QAKGILVLAATNRP 439 (611)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vI~~tn~~ 439 (611)
.++|.|.++..++.+|..++...|+||||||+|.+.++++.. ......+++++|+..|+++. ...+++||+|||.|
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~ 159 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 159 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCc
Confidence 999999999999999999999999999999999998877543 23456789999999999875 46789999999999
Q ss_pred cccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc-
Q 007255 440 HAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDIS- 517 (611)
Q Consensus 440 ~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~- 517 (611)
+.+|++++| ||+..+++++|+.++|.+||+.++++.+.. .+.++..+++.++|||++||..+|++|+..++++...
T Consensus 160 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~ 237 (322)
T 1xwi_A 160 WVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSA 237 (322)
T ss_dssp TTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred ccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999 999999999999999999999999887664 6788999999999999999999999999999887531
Q ss_pred ----------------------------------------------cccccHHHHHHHHhhcCCCCCHHHHHHHHHHhhc
Q 007255 518 ----------------------------------------------ATAVRNRHFQTVKDSLKPALTKEEIDSYSSFMKS 551 (611)
Q Consensus 518 ----------------------------------------------~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 551 (611)
..+|+..||..|+.+++|+++.++++.|++|.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~ 317 (322)
T 1xwi_A 238 THFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTED 317 (322)
T ss_dssp SEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHT
T ss_pred hhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 1368999999999999999999999999999876
Q ss_pred C
Q 007255 552 Q 552 (611)
Q Consensus 552 ~ 552 (611)
.
T Consensus 318 ~ 318 (322)
T 1xwi_A 318 F 318 (322)
T ss_dssp T
T ss_pred H
Confidence 5
No 17
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-39 Score=334.56 Aligned_cols=248 Identities=31% Similarity=0.518 Sum_probs=223.7
Q ss_pred cccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 5 GRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 5 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
+.+.+.+++.| +||+|++++|+.|.+.+..|+.+++.+...|+++|+++|||||||||||++|+++|++++.+++.+
T Consensus 161 ~~~~~~p~v~~---~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 161 MGENEKPDVTY---ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CEEESSCSCCG---GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred ccCCCCCCCCH---HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 44566777778 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC----CchhhHHHHHHHHHHHhcCCCCCCCC
Q 007255 85 SPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSV 160 (611)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~ 160 (611)
+++++.+.+.|+++..++.+|..+... .|||+||||+|.+++.+.. ......+++.+|++.||+....
T Consensus 238 ~~~~l~~~~~Ge~e~~ir~lF~~A~~~----aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~---- 309 (428)
T 4b4t_K 238 NGSEFVHKYLGEGPRMVRDVFRLAREN----APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS---- 309 (428)
T ss_dssp EGGGTCCSSCSHHHHHHHHHHHHHHHT----CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS----
T ss_pred ecchhhccccchhHHHHHHHHHHHHHc----CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC----
Confidence 999999999999999999999998865 4999999999999987632 2223457889999999986543
Q ss_pred CcEEEEEeecCcccccHHhhccCCcceEEEcc-CCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHH
Q 007255 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVT-VPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCRE 239 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~-~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~ 239 (611)
.+|+||+|||.++.+||+++|+|||+..|+|| +|+.++|..||+.++.+..+..+.++..+|..|+||+|+||.++|++
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~e 389 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQE 389 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHH
Confidence 36999999999999999999999999999997 79999999999999999998888999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccchhHHHHHHHHhc
Q 007255 240 ATMSAVKRSSDANECAGVLSVTMEDWRHARSV 271 (611)
Q Consensus 240 a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~ 271 (611)
|...++++.. ..++.+||..|...
T Consensus 390 A~~~a~r~~~--------~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 390 AGLRAVRKNR--------YVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHTTC--------SSBCHHHHHHHHHH
T ss_pred HHHHHHHCCC--------CCCCHHHHHHHHHH
Confidence 9999987643 25889999998764
No 18
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3e-39 Score=322.34 Aligned_cols=257 Identities=42% Similarity=0.752 Sum_probs=216.7
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
..|.++|+||+|++++++.|.+.+.+|+.++..+..+++.+++|++|+||||||||++++++|.+++..++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCccc
Q 007255 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
+|.|+.+..+..+|..++...|+++|+||+|.++..++... .....++.++++..|++......++++++||+|+.+
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~---~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE---TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc---chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 99999999999999999889999999999999887654321 122356789999999999888889999999999999
Q ss_pred chhccCCCCccceeecCCCCHHHHHHHHHHHhcC---CCCCCcccHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHhhcc
Q 007255 443 DAALMRPGRFDLVLYVPPPDLEARHEILRVHTRN---MKVGDDVDLRSIAEET--ELFTGAELEGLCREAGIVALREDIS 517 (611)
Q Consensus 443 d~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~---~~~~~~~~~~~la~~~--~g~s~~~i~~~~~~a~~~a~~~~~~ 517 (611)
|++++|||||++.|+++.|+.++|.+||+.++++ .+...+++++.+|..+ +||||+||.++|++|+..|+++.+.
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988854 3456789999999975 4999999999999999999887542
Q ss_pred ---------cccccHHHHHHHHhhcCCCCCHHHH
Q 007255 518 ---------ATAVRNRHFQTVKDSLKPALTKEEI 542 (611)
Q Consensus 518 ---------~~~i~~~~~~~~l~~~~~~~~~~~~ 542 (611)
...|+..||..|+.+++|+++.++.
T Consensus 240 ~~~~~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 240 RQKSGNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp ----------CCBCHHHHHHHHTTCCCCC-----
T ss_pred hccccccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 2369999999999999999887763
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=3.2e-39 Score=331.10 Aligned_cols=268 Identities=34% Similarity=0.602 Sum_probs=239.7
Q ss_pred cccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecch
Q 007255 279 GVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA 358 (611)
Q Consensus 279 ~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~ 358 (611)
.+....|.++|++|+|++.+++.|.+.+.+|+.++..+.. +..+++++|||||||||||++|+++|++++.+++.++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 3445678899999999999999999999999999988876 456788999999999999999999999999999999999
Q ss_pred hhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-CCCCeEEEEecC
Q 007255 359 ELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-QAKGILVLAATN 437 (611)
Q Consensus 359 ~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vI~~tn 437 (611)
++.++|.|..+..++.+|..++...|+||||||+|.+.++++.. ......++.++|+..|+++. ...+++||+|||
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccccCCceEEEEecC
Confidence 99999999999999999999999999999999999998876432 23446789999999999874 567899999999
Q ss_pred CCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Q 007255 438 RPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDI 516 (611)
Q Consensus 438 ~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~ 516 (611)
.|+.+|++++| ||+..++++.|+.++|.+||+.++++.+.. .+.++..++..++||+++||..+|++|...++++..
T Consensus 163 ~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 163 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp CGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred ChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999999887654 667899999999999999999999999999988764
Q ss_pred cc-----------------------------------------ccccHHHHHHHHhhcCCCCCHHHHHHHHHHhhcC
Q 007255 517 SA-----------------------------------------TAVRNRHFQTVKDSLKPALTKEEIDSYSSFMKSQ 552 (611)
Q Consensus 517 ~~-----------------------------------------~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 552 (611)
.. .+|+.+||..|++.++|+++.+++..|++|.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~ 317 (322)
T 3eie_A 241 SATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDF 317 (322)
T ss_dssp HCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHH
T ss_pred hhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 32 4699999999999999999999999999998764
No 20
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.7e-38 Score=329.26 Aligned_cols=271 Identities=33% Similarity=0.596 Sum_probs=230.6
Q ss_pred ccccccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 276 ITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 276 ~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
....+....+.++|++|+|++.+++.|.+.+.+|+.++..+.. +..+++++|||||||||||++|+++|++++.+++.+
T Consensus 37 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 37 LSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp ----------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred HhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 3344455678899999999999999999999999999998886 567788999999999999999999999999999999
Q ss_pred cchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCC-CCCeEEEE
Q 007255 356 SGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ-AKGILVLA 434 (611)
Q Consensus 356 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~ 434 (611)
+++++.++|.|..+..++.+|..++...|+||||||+|.+.+.++.. ......++.++|+..|+++.. ..+++||+
T Consensus 116 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~ 192 (355)
T 2qp9_X 116 SSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLG 192 (355)
T ss_dssp EHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEE
T ss_pred eHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEe
Confidence 99999999999999999999999999999999999999998776432 234567889999999998753 57899999
Q ss_pred ecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 007255 435 ATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALR 513 (611)
Q Consensus 435 ~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~ 513 (611)
+||.|+.+|++++| ||+..+++++|+.++|.+||+.++++.+.. .+.+++.|++.++||+++||.++|++|+..|++
T Consensus 193 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~ 270 (355)
T 2qp9_X 193 ATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 270 (355)
T ss_dssp EESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999887653 677899999999999999999999999999998
Q ss_pred hhcc-----------------------------------------cccccHHHHHHHHhhcCCCCCHHHHHHHHHHhhcC
Q 007255 514 EDIS-----------------------------------------ATAVRNRHFQTVKDSLKPALTKEEIDSYSSFMKSQ 552 (611)
Q Consensus 514 ~~~~-----------------------------------------~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 552 (611)
+... ..+|+..||..|+..++|+++.++++.|++|.+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~ 350 (355)
T 2qp9_X 271 KIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDF 350 (355)
T ss_dssp HHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHT
T ss_pred HHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 7421 23599999999999999999999999999998875
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.1e-37 Score=332.44 Aligned_cols=271 Identities=35% Similarity=0.600 Sum_probs=230.8
Q ss_pred ccccccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-CCcEEe
Q 007255 276 ITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-EASFFS 354 (611)
Q Consensus 276 ~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-~~~~~~ 354 (611)
....+....|.++|++|+|++.+++.|.+.+.+|+.++..|.. +..+++++||+||||||||++|+++|+++ +.+|+.
T Consensus 120 ~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~ 198 (444)
T 2zan_A 120 LQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 198 (444)
T ss_dssp ----CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEE
T ss_pred hhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEE
Confidence 3444555678899999999999999999999999998888764 34667899999999999999999999999 899999
Q ss_pred ecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-CCCCeEEE
Q 007255 355 LSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-QAKGILVL 433 (611)
Q Consensus 355 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vI 433 (611)
++++++.++|.|.++..++.+|..++...|+||||||+|.+.++++.. ......+++++|+..|+++. ...+++||
T Consensus 199 v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI 275 (444)
T 2zan_A 199 ISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVL 275 (444)
T ss_dssp ECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEE
T ss_pred EeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEE
Confidence 999999999999999999999999999999999999999998876543 23456789999999999875 46789999
Q ss_pred EecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007255 434 AATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVAL 512 (611)
Q Consensus 434 ~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~ 512 (611)
+|||.|+.+|++++| ||+..+++++|+.++|..||+.++.+.+.. .+.++..|+..++|||++||..+|++|+..++
T Consensus 276 ~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~ 353 (444)
T 2zan_A 276 GATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPV 353 (444)
T ss_dssp EEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHH
T ss_pred ecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999998877653 67889999999999999999999999999998
Q ss_pred Hhhcc-----------------------------------------------cccccHHHHHHHHhhcCCCCCHHHHHHH
Q 007255 513 REDIS-----------------------------------------------ATAVRNRHFQTVKDSLKPALTKEEIDSY 545 (611)
Q Consensus 513 ~~~~~-----------------------------------------------~~~i~~~~~~~~l~~~~~~~~~~~~~~~ 545 (611)
++.+. ..+|+..||..|+..++|+++.++++.|
T Consensus 354 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~ 433 (444)
T 2zan_A 354 RKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKL 433 (444)
T ss_dssp HHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHH
T ss_pred HHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHH
Confidence 87431 1368999999999999999999999999
Q ss_pred HHHhhcC
Q 007255 546 SSFMKSQ 552 (611)
Q Consensus 546 ~~~~~~~ 552 (611)
++|.+..
T Consensus 434 ~~~~~~~ 440 (444)
T 2zan_A 434 KKFTEDF 440 (444)
T ss_dssp HHHTSSC
T ss_pred HHHHHHH
Confidence 9998654
No 22
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=2e-35 Score=313.55 Aligned_cols=248 Identities=42% Similarity=0.720 Sum_probs=221.9
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccc
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~ 363 (611)
.+.++|++|+|++++++.+.+.+.. +..+..+.+++...++++||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 4577899999999999999998876 677888999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccc
Q 007255 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAID 443 (611)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld 443 (611)
|.|.....++.+|..++...|+||||||+|.+..+++....+......+.+++|+..|+++....+++||++||+|+.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99999999999999999999999999999999887754333334455688999999999887778999999999999999
Q ss_pred hhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccH
Q 007255 444 AALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRN 523 (611)
Q Consensus 444 ~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~ 523 (611)
++++|||||+..+.++.|+.++|.+|++.++++.++..++++..++..+.||+++||.++|++|+..+.++. ...|+.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~--~~~I~~ 246 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG--RDKITM 246 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CSSBCH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC--CCeecH
Confidence 999999999999999999999999999999999888888999999999999999999999999999887653 457999
Q ss_pred HHHHHHHhhcC
Q 007255 524 RHFQTVKDSLK 534 (611)
Q Consensus 524 ~~~~~~l~~~~ 534 (611)
.||..++.++.
T Consensus 247 ~dl~~al~~v~ 257 (476)
T 2ce7_A 247 KDFEEAIDRVI 257 (476)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999998774
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.6e-34 Score=291.48 Aligned_cols=250 Identities=43% Similarity=0.730 Sum_probs=229.2
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
..|..+|++++|++.+++.+.+.+..++.++..+.+++..+++++||+||||||||++|+++|.+++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCccc
Q 007255 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
.+.|..+..++.+|..++...|+||||||+|.+.+++............+.+..++..+++.....+++||+|||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 99999999999999999999999999999999988776544444444567778888888888788899999999999999
Q ss_pred chhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccc
Q 007255 443 DAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVR 522 (611)
Q Consensus 443 d~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~ 522 (611)
|++++|++||+..+.++.|+.++|.+|++.+++......+.++..++..+.||++++|+.+|+.|...|..+. ...|+
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~--~~~I~ 247 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL--RDYVT 247 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT--CSSBC
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCcCC
Confidence 9999999999999999999999999999999998888888999999999999999999999999999998775 45699
Q ss_pred HHHHHHHHhhcC
Q 007255 523 NRHFQTVKDSLK 534 (611)
Q Consensus 523 ~~~~~~~l~~~~ 534 (611)
.+|+..++..+.
T Consensus 248 ~~d~~~al~~~~ 259 (285)
T 3h4m_A 248 MDDFRKAVEKIM 259 (285)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997663
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=3e-34 Score=284.83 Aligned_cols=249 Identities=40% Similarity=0.678 Sum_probs=218.9
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
..+..+|++++|++.+++.+.+.+.+ +.++..+.+++...+++++|+||||||||++|+++|.+++.+++.++++++..
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 45678999999999999999988765 67777788888888999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCccc
Q 007255 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
.+.|..+..++.+|..+....|+++||||+|.+...+............+.++.++..++++....+++||++||.|+.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 99999999999999999988899999999999987765433333344457889999999988888899999999999999
Q ss_pred chhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccc
Q 007255 443 DAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVR 522 (611)
Q Consensus 443 d~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~ 522 (611)
|++++|+|||+..+.++.|+.++|.+|++.++++.++..+.++..++..+.||+++||.++|++|...|..+. ...|+
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~--~~~i~ 241 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--KRVVS 241 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CSSBC
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCccc
Confidence 9999999999999999999999999999999998888888899999999999999999999999999988764 46799
Q ss_pred HHHHHHHHhhcC
Q 007255 523 NRHFQTVKDSLK 534 (611)
Q Consensus 523 ~~~~~~~l~~~~ 534 (611)
.+|+..++..+.
T Consensus 242 ~~~~~~a~~~~~ 253 (257)
T 1lv7_A 242 MVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999987664
No 25
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=7.4e-34 Score=324.44 Aligned_cols=439 Identities=18% Similarity=0.244 Sum_probs=295.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~ 85 (611)
..+++++|.++.++.+.+.+.. ..++++||+||||||||++++++++.+ +..++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 4678999999999998887632 256799999999999999999999987 56677777
Q ss_pred ccccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcE
Q 007255 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (611)
Q Consensus 86 ~~~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v 163 (611)
...+. ..+.|..+..++.++..+... .++||||||+|.+.+.+.... ......+.|...++. +.+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~----~~~iL~IDEi~~l~~~~~~~~-~~~~~~~~L~~~l~~--------~~~ 316 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQD----TNSILFIDEIHTIIGAGAASG-GQVDAANLIKPLLSS--------GKI 316 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSS----SCEEEEETTTTTTTTSCCSSS-CHHHHHHHHSSCSSS--------CCC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhc----CCeEEEEechHHHhhcCCCCc-chHHHHHHHHHHHhC--------CCe
Confidence 77665 356678888888888776532 479999999999987654321 122233333333321 247
Q ss_pred EEEEeecCcc-----cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCC----CCC-CcccHHHHHHhccCCc----
Q 007255 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV----PLD-ANVDLEAIATSCNGYV---- 229 (611)
Q Consensus 164 ~ii~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~~~~~la~~~~g~~---- 229 (611)
.+|++||.++ .+|+++.+ ||. .+.++.|+.+++.+|++.+...+ ... .+..+..++..+.+|.
T Consensus 317 ~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~ 393 (758)
T 1r6b_X 317 RVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH 393 (758)
T ss_dssp EEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSC
T ss_pred EEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccccc
Confidence 8888888753 56899998 997 79999999999999998766432 111 1223666666666653
Q ss_pred -cccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhccCCccccccc-------ccCCCcccccccchhHHHHH
Q 007255 230 -GADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSITRGVT-------VEIPKVTWEDIGGLRDLKKK 301 (611)
Q Consensus 230 -~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~~~~~~~~-------~~~~~~~~~~i~g~~~~k~~ 301 (611)
...+..++++|+........ ......++.+++..+............. ......-.++++|++.+++.
T Consensus 394 lp~~~i~lld~a~~~~~~~~~----~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~ 469 (758)
T 1r6b_X 394 LPDKAIDVIDEAGARARLMPV----SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEA 469 (758)
T ss_dssp TTHHHHHHHHHHHHHHHHSSS----CCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcccc----cccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 34566777777644322111 1122346777877776543211100000 00001112357888888888
Q ss_pred HHHHhhccCCChhHHhhcCC----CCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccc------------cc
Q 007255 302 LQQAVEWPIKHSTAFSRLGI----SPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM------------YV 365 (611)
Q Consensus 302 l~~~~~~~~~~~~~~~~~~~----~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~------------~~ 365 (611)
+...+.. .+.|. +|..++||+||||||||++|+++|..++.+++.++++++... |+
T Consensus 470 l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~ 541 (758)
T 1r6b_X 470 LTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYV 541 (758)
T ss_dssp HHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSH
T ss_pred HHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCc
Confidence 8776653 12233 344579999999999999999999999999999999987653 44
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCC---------CCCeEEEEec
Q 007255 366 GESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ---------AKGILVLAAT 436 (611)
Q Consensus 366 g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------~~~~~vI~~t 436 (611)
|..+. ..+....+..+++||||||+|.+ ...+++.|++.|+...- ..+++||+||
T Consensus 542 g~~~~--~~l~~~~~~~~~~vl~lDEi~~~--------------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 542 GFDQG--GLLTDAVIKHPHAVLLLDEIEKA--------------HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp HHHHT--THHHHHHHHCSSEEEEEETGGGS--------------CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEE
T ss_pred Ccccc--chHHHHHHhCCCcEEEEeCcccc--------------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEec
Confidence 43222 22344555667789999999976 35688999999874211 1468899999
Q ss_pred CCCc-------------------------ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCC---------CC-CC
Q 007255 437 NRPH-------------------------AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNM---------KV-GD 481 (611)
Q Consensus 437 n~~~-------------------------~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~---------~~-~~ 481 (611)
|.+. .++|++++ ||+.+|.|++|+.+++..|++.++..+ .+ .+
T Consensus 606 N~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 683 (758)
T 1r6b_X 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVS 683 (758)
T ss_dssp CSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEEC
T ss_pred CcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeC
Confidence 9854 56788888 999999999999999999999776532 11 12
Q ss_pred cccHHHHHHhC--CCCCHHHHHHHHHHHHHHHHH
Q 007255 482 DVDLRSIAEET--ELFTGAELEGLCREAGIVALR 513 (611)
Q Consensus 482 ~~~~~~la~~~--~g~s~~~i~~~~~~a~~~a~~ 513 (611)
+..++.|+... .+++.+++.++++.+...++-
T Consensus 684 ~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~ 717 (758)
T 1r6b_X 684 QEARNWLAEKGYDRAMGARPMARVIQDNLKKPLA 717 (758)
T ss_dssp HHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHH
Confidence 33456666543 245567888877766655443
No 26
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=6e-34 Score=324.57 Aligned_cols=429 Identities=17% Similarity=0.238 Sum_probs=272.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~ 85 (611)
..+++++|.++.++.+.+.+.. ..++++||+||||||||++|+++|+.+ +..++.++
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 4578999999999999887643 245789999999999999999999997 77788777
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 007255 86 PHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVV 165 (611)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~i 165 (611)
+ ...+.|+.+..++.+|..+.. ..++||||| .. ...++.|+..++. +.+.+
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~----~~~~iLfiD-----~~---------~~~~~~L~~~l~~--------~~v~~ 294 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQ----AGNIILFID-----AA---------IDASNILKPSLAR--------GELQC 294 (758)
T ss_dssp ------------CTTHHHHHHHHHT----CCCCEEEEC-----C-----------------CCCTTS--------SSCEE
T ss_pred c---cccccchHHHHHHHHHHHHHh----cCCEEEEEc-----Cc---------hhHHHHHHHHHhc--------CCEEE
Confidence 6 445567777788888888764 358999999 10 1233444444442 25789
Q ss_pred EEeecCcc-----cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-----CcccHHHHHHhccC-----Ccc
Q 007255 166 VASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-----ANVDLEAIATSCNG-----YVG 230 (611)
Q Consensus 166 i~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-----~~~~~~~la~~~~g-----~~~ 230 (611)
|++||..+ .+++++++ ||. .+.|+.|+.+++.+|++.+...+... .+..+..++..+.+ +.+
T Consensus 295 I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p 371 (758)
T 3pxi_A 295 IGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLP 371 (758)
T ss_dssp EEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred EeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCC
Confidence 99999877 78999999 994 79999999999999999877654321 12235555555443 344
Q ss_pred ccHHHHHHHHHHHHhhhcccccc-----------------------------------------------------cccc
Q 007255 231 ADLEALCREATMSAVKRSSDANE-----------------------------------------------------CAGV 257 (611)
Q Consensus 231 ~dl~~l~~~a~~~a~~r~~~~~~-----------------------------------------------------~~~~ 257 (611)
.....++++|+..+..+...... ....
T Consensus 372 ~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 451 (758)
T 3pxi_A 372 DKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQEN 451 (758)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC-
T ss_pred cHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 55556666665433221110000 0001
Q ss_pred cchhHHHHHHHHhccCCcccccc-c------ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCccee
Q 007255 258 LSVTMEDWRHARSVVGPSITRGV-T------VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLH 330 (611)
Q Consensus 258 ~~v~~ed~~~a~~~i~~~~~~~~-~------~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~ 330 (611)
..++.+++............... . ......-.++++|++.+++.+.+.+........ ...+|..++||+
T Consensus 452 ~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~ 527 (758)
T 3pxi_A 452 SEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFL 527 (758)
T ss_dssp --CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEE
T ss_pred cccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEE
Confidence 11222222222221110000000 0 000011135688999999888888764221100 011223369999
Q ss_pred CCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCc
Q 007255 331 GPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSI 407 (611)
Q Consensus 331 Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~ 407 (611)
||||||||++|+++|..+ +.+++.++++++...+... ...+....+...++||||||||.+
T Consensus 528 Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~------------ 591 (758)
T 3pxi_A 528 GPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKA------------ 591 (758)
T ss_dssp SCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGS------------
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCcccc------------
Confidence 999999999999999998 7899999999998876655 122334455567789999999876
Q ss_pred chhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCCcc------------cchhccCCCCccceeecCCCCHHHH
Q 007255 408 TVGERLLSTLLTEMDGLE---------QAKGILVLAATNRPHA------------IDAALMRPGRFDLVLYVPPPDLEAR 466 (611)
Q Consensus 408 ~~~~~~~~~ll~~l~~~~---------~~~~~~vI~~tn~~~~------------ld~al~r~gRf~~~i~~~~p~~~~r 466 (611)
...+++.|++.|+... ...++++|+|||.+.. ++|++++ ||+.+|.|++|+.+++
T Consensus 592 --~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~ 667 (758)
T 3pxi_A 592 --HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHL 667 (758)
T ss_dssp --CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHH
T ss_pred --CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHH
Confidence 3567889999887522 2346799999997553 6778887 9999999999999999
Q ss_pred HHHHHHHhcCC-------CCC---CcccHHHHHHh--CCCCCHHHHHHHHHHHHHHHHH
Q 007255 467 HEILRVHTRNM-------KVG---DDVDLRSIAEE--TELFTGAELEGLCREAGIVALR 513 (611)
Q Consensus 467 ~~il~~~~~~~-------~~~---~~~~~~~la~~--~~g~s~~~i~~~~~~a~~~a~~ 513 (611)
..|++.++..+ ... ++..++.|++. ...+..++++++++.+...++-
T Consensus 668 ~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~ 726 (758)
T 3pxi_A 668 TEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLS 726 (758)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Confidence 99998765432 111 23345666653 2345667888888766555443
No 27
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=4.6e-34 Score=305.98 Aligned_cols=249 Identities=44% Similarity=0.704 Sum_probs=230.5
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcccc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~ 364 (611)
+..+|++|+|++..++.+.+.+..++.+++.|..++..+++++||+||||||||++|+++|++++.+|+.++++++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccch
Q 007255 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDA 444 (611)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~ 444 (611)
.|..+..++.+|..+....|++|||||+|.+.+++... ......++++.|+..|++.....+++||+|||+|+.+|+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 99999999999999999999999999999999876432 234567899999999998888889999999999999999
Q ss_pred hccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc-------
Q 007255 445 ALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDIS------- 517 (611)
Q Consensus 445 al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~------- 517 (611)
+++|+|||+..++++.|+.++|.+||+.+++.+....+.++..++..+.||+++++..+|++|...+.++...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999888999999999999999999999999999999987643
Q ss_pred --------cccccHHHHHHHHhhcCCC
Q 007255 518 --------ATAVRNRHFQTVKDSLKPA 536 (611)
Q Consensus 518 --------~~~i~~~~~~~~l~~~~~~ 536 (611)
...++.+||..++..++|+
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ps 462 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPS 462 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred ccchhhcccCcCCHHHHHHHHHhCCch
Confidence 2358899999999888775
No 28
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=7.6e-34 Score=288.18 Aligned_cols=265 Identities=35% Similarity=0.564 Sum_probs=228.0
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~ 361 (611)
...++.+|++++|++.+++.+.+.+..+..+++.+..++ .+++++||+||||||||++|+++|.+++.+++.++++++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 345788999999999999999999998888888777655 4578999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCC---CCeEEEEecCC
Q 007255 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQA---KGILVLAATNR 438 (611)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~vI~~tn~ 438 (611)
..+.|..+..++.+|..+....|+||||||+|.+...+.... .....++.+.|+..+++.... .+++||++||.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 999999999999999999999999999999999987764322 233467888999999876543 57999999999
Q ss_pred CcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc-
Q 007255 439 PHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDI- 516 (611)
Q Consensus 439 ~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~- 516 (611)
|+.+|++++| ||+..++++.|+.++|..|++.++++.... ++.++..+++.+.||+++++..+|+.|...++++..
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999888766543 456789999999999999999999999999887642
Q ss_pred ---------ccccccHHHHHHHHhhcCCCCCHHHHHHHHHHhhcC
Q 007255 517 ---------SATAVRNRHFQTVKDSLKPALTKEEIDSYSSFMKSQ 552 (611)
Q Consensus 517 ---------~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 552 (611)
....|+.+||..++..++|+++.++++.|++|.+..
T Consensus 247 ~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~ 291 (297)
T 3b9p_A 247 EQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDY 291 (297)
T ss_dssp -------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC---
T ss_pred hhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 235799999999999999999999999999997654
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-34 Score=296.19 Aligned_cols=263 Identities=33% Similarity=0.606 Sum_probs=229.2
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccc
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~ 363 (611)
.+..+|++|+|++.+++.|.+.+.+|+.++..+.+.+ .+++++||+||||||||++|+++|.+++.+++.++++++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 4678999999999999999999999888888776654 567899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--CCCCeEEEEecCCCcc
Q 007255 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--QAKGILVLAATNRPHA 441 (611)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~~vI~~tn~~~~ 441 (611)
|.|..+..++.+|..++...|+||||||+|.+.+++... ......+++++|+..+++.. ...+++||+|||.++.
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~ 233 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC---cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh
Confidence 999999999999999999999999999999998776432 23446788999999999764 3568999999999999
Q ss_pred cchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc----
Q 007255 442 IDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDI---- 516 (611)
Q Consensus 442 ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~---- 516 (611)
+|++++| ||+..++++.|+.++|.+|++.+++..... .+.++..+++.++||++++|..+|+.|...++++..
T Consensus 234 l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~ 311 (357)
T 3d8b_A 234 IDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI 311 (357)
T ss_dssp BCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC---
T ss_pred CCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999 999999999999999999999888765543 456789999999999999999999999998887532
Q ss_pred ------ccccccHHHHHHHHhhcCCCCCHHHHHHHHHHhhcC
Q 007255 517 ------SATAVRNRHFQTVKDSLKPALTKEEIDSYSSFMKSQ 552 (611)
Q Consensus 517 ------~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 552 (611)
...+|+..||..++..++|+++.++++.|++|.+..
T Consensus 312 ~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~ 353 (357)
T 3d8b_A 312 ATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTF 353 (357)
T ss_dssp -------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHH
T ss_pred ccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 235799999999999999999999999999998753
No 30
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=294.40 Aligned_cols=275 Identities=33% Similarity=0.509 Sum_probs=227.7
Q ss_pred cCCcccccccccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc
Q 007255 272 VGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS 351 (611)
Q Consensus 272 i~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~ 351 (611)
+.......+....+.++|++|+|++.+++.+.+.+..+..++..+...+ .+++++||+||||||||++|+++|.+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 97 LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred HHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 3444445555667788999999999999999999998888887777665 456899999999999999999999999999
Q ss_pred EEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCC--CCC
Q 007255 352 FFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ--AKG 429 (611)
Q Consensus 352 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~ 429 (611)
|+.++++++.+.|.|..+..++.+|..++...|+||||||||.+++++.. .......++++.|+..|++... ..+
T Consensus 176 ~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 176 FFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE---GEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp EEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----C
T ss_pred EEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC---ccchHHHHHHHHHHHHhhcccccCCCC
Confidence 99999999999999999999999999999999999999999999877643 2234467889999999987654 567
Q ss_pred eEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHH
Q 007255 430 ILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAG 508 (611)
Q Consensus 430 ~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~ 508 (611)
++||+|||.++.+|++++| ||+..++++.|+.++|..||+.++...... .+.++..++..++||++++|..+|+.|.
T Consensus 253 v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~ 330 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAA 330 (389)
T ss_dssp EEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred EEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999888765443 4567899999999999999999999999
Q ss_pred HHHHHhhc----------ccccccHHHHHHHHhhcCCCCCHHHHHHHHHHhhcC
Q 007255 509 IVALREDI----------SATAVRNRHFQTVKDSLKPALTKEEIDSYSSFMKSQ 552 (611)
Q Consensus 509 ~~a~~~~~----------~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 552 (611)
..++++.. ....|+.+||..++...+|+++.+.++.|++|.+..
T Consensus 331 ~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~ 384 (389)
T 3vfd_A 331 LGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDF 384 (389)
T ss_dssp THHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 99988732 234789999999999999999999999999998765
No 31
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=2.1e-33 Score=299.80 Aligned_cols=248 Identities=41% Similarity=0.697 Sum_probs=221.7
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcccc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~ 364 (611)
+.++|++|+|+++++..+.+.+.. +..+..+..++...+++++|+||||||||++|+++|.+++.+++.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 788999999999999999998775 6677788888999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccch
Q 007255 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDA 444 (611)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~ 444 (611)
.|.....++.+|+.++...|+|+||||+|.+..+++...........+.+++|+..|++......+++|++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99988899999999887889999999999998776532222234456788999999999888888999999999999999
Q ss_pred hccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHH
Q 007255 445 ALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNR 524 (611)
Q Consensus 445 al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~ 524 (611)
+++|||||+..|.++.|+.++|.+||+.++++.++..++++..+|..+.||+++||+++|++|+..+.++. ...|+.+
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~--~~~It~~ 262 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RRKITMK 262 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC--CSSCCSH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCccCHH
Confidence 99999999999999999999999999999988888888999999999999999999999999988876542 4579999
Q ss_pred HHHHHHhhcCC
Q 007255 525 HFQTVKDSLKP 535 (611)
Q Consensus 525 ~~~~~l~~~~~ 535 (611)
|+..++.++.+
T Consensus 263 dl~~al~~v~~ 273 (499)
T 2dhr_A 263 DLEEAADRVMM 273 (499)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999987643
No 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=5.2e-33 Score=276.67 Aligned_cols=248 Identities=38% Similarity=0.632 Sum_probs=196.0
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcccc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~ 364 (611)
|.++|++++|++.+++.+.+.+.+ +.++..+..+|..+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999998876 7778888888999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCC-cchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccc
Q 007255 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTS-ITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAID 443 (611)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld 443 (611)
.+.....++.+|..+....|+||||||+|.+.++++...... .......++.++..+++.....++++|+|||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 999999999999999988999999999999987764322111 1223466788899999877778999999999999999
Q ss_pred hhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCccc--HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Q 007255 444 AALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVD--LRSIAEETELFTGAELEGLCREAGIVALREDISATAV 521 (611)
Q Consensus 444 ~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~--~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i 521 (611)
++++|+|||+..++++.|+.++|.+|++.+++......+.+ +..++..+.||++++|..+|+.|...|..+. ...|
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~--~~~i 237 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG--HTSV 237 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----------C
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC--CCCC
Confidence 99999999999999999999999999999888777654443 4789999999999999999999998887653 4568
Q ss_pred cHHHHHHHHhhcCC
Q 007255 522 RNRHFQTVKDSLKP 535 (611)
Q Consensus 522 ~~~~~~~~l~~~~~ 535 (611)
+.+|+..++.++.+
T Consensus 238 ~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 238 HTLNFEYAVERVLA 251 (262)
T ss_dssp CBCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcc
Confidence 88888888876543
No 33
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.1e-32 Score=293.07 Aligned_cols=273 Identities=47% Similarity=0.780 Sum_probs=229.6
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~ 96 (611)
.+++|+|++.+++.|.+.+..++..++.+..+|..++.++||+||||||||+++++++++++.+++.+++..+...+.|.
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~ 281 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTH
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcch
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccc
Q 007255 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (611)
Q Consensus 97 ~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l 175 (611)
....++.+|..+... .|++|||||+|.+.+.++. ..+....++..|+..++.... ..++++|++||.++.+
T Consensus 282 ~~~~~~~~f~~A~~~----~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~----~~~v~vIaaTn~~~~L 353 (489)
T 3hu3_A 282 SESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ----RAHVIVMAATNRPNSI 353 (489)
T ss_dssp HHHHHHHHHHHHHHT----CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT----TSCEEEEEEESCGGGB
T ss_pred hHHHHHHHHHHHHhc----CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc----CCceEEEEecCCcccc
Confidence 999999999988754 4899999999999987643 345567889999999997543 2369999999999999
Q ss_pred cHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccc--
Q 007255 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANE-- 253 (611)
Q Consensus 176 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~-- 253 (611)
++++++++||...++++.|+.++|.+|++.++.......+.++..++..+.||+++++..+|++|...+.++..+...
T Consensus 354 d~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~ 433 (489)
T 3hu3_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (489)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTT
T ss_pred CHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999999999999999999999999999999888888888999999999999999999999999999887643211
Q ss_pred -------cccccchhHHHHHHHHhccCCcccccccccCCCcccccccchhH
Q 007255 254 -------CAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRD 297 (611)
Q Consensus 254 -------~~~~~~v~~ed~~~a~~~i~~~~~~~~~~~~~~~~~~~i~g~~~ 297 (611)
......++.+||..+...+.|+..+......|.++|+||+|...
T Consensus 434 ~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp CSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred ccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 11234688999999999999999999999999999999999654
No 34
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=2.8e-32 Score=314.05 Aligned_cols=448 Identities=21% Similarity=0.266 Sum_probs=270.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~ 85 (611)
..+++++|.++.++.+.+.+.. ..+++++|+||||||||++++.+|+.+ +..++.++
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 4678999999999998887632 245689999999999999999999988 78899999
Q ss_pred ccccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcE
Q 007255 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (611)
Q Consensus 86 ~~~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v 163 (611)
++.+. ..+.|+....++.++..+... ..++||||||+|.+.+.....+ .....+.+...++.. .+
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~~g--~~~~~~~L~~~l~~~--------~i 300 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQS---QGEVILFIDELHTVVGAGKAEG--AVDAGNMLKPALARG--------EL 300 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTT---CSSEEEEECCC---------------------HHHHHTT--------CC
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhc---CCCeEEEEecHHHHhccCCccc--hHHHHHHHHHHHhCC--------Ce
Confidence 88876 456677888888888887642 3578999999999986543221 123445555666542 36
Q ss_pred EEEEeecCcc----cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCC----CCC-CcccHHHHHHhccCC-----c
Q 007255 164 VVVASTNRVD----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV----PLD-ANVDLEAIATSCNGY-----V 229 (611)
Q Consensus 164 ~ii~ttn~~~----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~~~~~la~~~~g~-----~ 229 (611)
.+|++||.++ .+++++.+ ||. .+.+++|+.+++.+|++.++... ... .+..+..++..+.|| .
T Consensus 301 ~~I~at~~~~~~~~~~d~aL~r--Rf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~l 377 (854)
T 1qvr_A 301 RLIGATTLDEYREIEKDPALER--RFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRL 377 (854)
T ss_dssp CEEEEECHHHHHHHTTCTTTCS--CCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCT
T ss_pred EEEEecCchHHhhhccCHHHHh--CCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccC
Confidence 6888888764 47899998 997 59999999999999998766532 111 122355555555443 2
Q ss_pred cccHHHHHHHHHHHHhhhcccc----------------------ccc---------------------------------
Q 007255 230 GADLEALCREATMSAVKRSSDA----------------------NEC--------------------------------- 254 (611)
Q Consensus 230 ~~dl~~l~~~a~~~a~~r~~~~----------------------~~~--------------------------------- 254 (611)
......++++|+.......... .+.
T Consensus 378 p~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (854)
T 1qvr_A 378 PDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWERER 457 (854)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445554443322110000 000
Q ss_pred -------------------------c---------------------------------cccchhHHHHHHHHhccCCcc
Q 007255 255 -------------------------A---------------------------------GVLSVTMEDWRHARSVVGPSI 276 (611)
Q Consensus 255 -------------------------~---------------------------------~~~~v~~ed~~~a~~~i~~~~ 276 (611)
. ....++.+++...........
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~~~~~ip 537 (854)
T 1qvr_A 458 EILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIP 537 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHHHHHhCCC
Confidence 0 000111122211111110000
Q ss_pred -cccc------cccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-
Q 007255 277 -TRGV------TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA- 348 (611)
Q Consensus 277 -~~~~------~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~- 348 (611)
.+.. ....+..-+++++|++.+.+.+...+....... .-...|..++||+||||||||++|+++|..+
T Consensus 538 ~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~----~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 538 VSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGC----SCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred hHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhccc----CCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 0000 000011123567888888888877765311000 0011233579999999999999999999998
Q ss_pred --CCcEEeecchhhccc------------cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHH
Q 007255 349 --EASFFSLSGAELYSM------------YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLL 414 (611)
Q Consensus 349 --~~~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 414 (611)
+.+++.++++++... |+|..+ ...+....+...++||||||++.+ ...++
T Consensus 614 ~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l--------------~~~~~ 677 (854)
T 1qvr_A 614 DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA--------------HPDVF 677 (854)
T ss_dssp SSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGS--------------CHHHH
T ss_pred CCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc--------------CHHHH
Confidence 789999999877553 222222 123444455566789999999876 35688
Q ss_pred HHHHHHhcCCCC---------CCCeEEEEecCCCc--------------------------ccchhccCCCCccceeecC
Q 007255 415 STLLTEMDGLEQ---------AKGILVLAATNRPH--------------------------AIDAALMRPGRFDLVLYVP 459 (611)
Q Consensus 415 ~~ll~~l~~~~~---------~~~~~vI~~tn~~~--------------------------~ld~al~r~gRf~~~i~~~ 459 (611)
+.|++.|+...- -.+++||+|||.+. .+.|+|+. ||+.++.|+
T Consensus 678 ~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~ 755 (854)
T 1qvr_A 678 NILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFR 755 (854)
T ss_dssp HHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCC
T ss_pred HHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCC
Confidence 999999984321 13688999999731 23455665 999999999
Q ss_pred CCCHHHHHHHHHHHhcCC---------CC-CCcccHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHh
Q 007255 460 PPDLEARHEILRVHTRNM---------KV-GDDVDLRSIAEETE--LFTGAELEGLCREAGIVALRE 514 (611)
Q Consensus 460 ~p~~~~r~~il~~~~~~~---------~~-~~~~~~~~la~~~~--g~s~~~i~~~~~~a~~~a~~~ 514 (611)
+|+.+++..|++.++..+ .+ .++..++.|+.... .+..++++++++.+...+..+
T Consensus 756 pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 756 PLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 999999999998766421 11 13344667777655 457788898888776666544
No 35
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=4.5e-32 Score=268.61 Aligned_cols=246 Identities=41% Similarity=0.703 Sum_probs=212.6
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~ 361 (611)
...|..+|++++|++.++..+.+.... +..+..+...++..++|++|+||||||||++++++|..++..++.+++.++.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 345788999999999999999987765 5667788888999899999999999999999999999999999999999998
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcc
Q 007255 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHA 441 (611)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 441 (611)
..+.+.....+..+|+.+....|+++|+||+|.+...+............+.+++++..|++......++++++||.|+.
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh
Confidence 88888888889999999887789999999999997765432112223446778999999998877778999999999999
Q ss_pred cchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Q 007255 442 IDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAV 521 (611)
Q Consensus 442 ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i 521 (611)
+|++++|++||+..++++.|+.++|.+||+.+.++.++..++++..++..+.||+++||+++|++|...|..+. ...|
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~--~~~I 244 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RRKI 244 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CSSB
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--CCCc
Confidence 99999999999999999999999999999999988888888999999999999999999999999999887653 3568
Q ss_pred cHHHHHHHH
Q 007255 522 RNRHFQTVK 530 (611)
Q Consensus 522 ~~~~~~~~l 530 (611)
+.+|+..++
T Consensus 245 ~~~dl~~a~ 253 (254)
T 1ixz_A 245 TMKDLEEAA 253 (254)
T ss_dssp CHHHHHHHT
T ss_pred CHHHHHHHh
Confidence 999888775
No 36
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.1e-31 Score=269.37 Aligned_cols=230 Identities=32% Similarity=0.553 Sum_probs=200.2
Q ss_pred ccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEE
Q 007255 6 RIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-GAHLTVI 84 (611)
Q Consensus 6 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l-~~~~~~v 84 (611)
.+.+.+++.| ++|+|++++++.|.+.+..|+.+++.+.. +..+++++||+||||||||++++++|+++ +.+++.+
T Consensus 2 i~~~~~~~~~---~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i 77 (322)
T 1xwi_A 2 IVIERPNVKW---SDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI 77 (322)
T ss_dssp CEEECCCCCG---GGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEE
T ss_pred eeecCCCCCH---HHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEE
Confidence 4566778888 88999999999999999999999888763 35677999999999999999999999999 8899999
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCC-chhhHHHHHHHHHHHhcCCCCCCCCCcE
Q 007255 85 SPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-REQDVRIASQLFTLMDSNKPSKTSVPHV 163 (611)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~~v 163 (611)
+++++...+.|..+..++.+|..+... +|+||||||+|.+++.+... .....++..+++..++.... ...++
T Consensus 78 ~~~~l~~~~~g~~~~~~~~lf~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~---~~~~v 150 (322)
T 1xwi_A 78 SSSDLVSKWLGESEKLVKNLFQLAREN----KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV---DNDGI 150 (322)
T ss_dssp ECCSSCCSSCCSCHHHHHHHHHHHHHT----SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS---CCTTE
T ss_pred EhHHHHhhhhhHHHHHHHHHHHHHHhc----CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc---cCCCE
Confidence 999999999999999999999887644 59999999999998866432 34455778889999987542 22469
Q ss_pred EEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHHH
Q 007255 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATM 242 (611)
Q Consensus 164 ~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~ 242 (611)
++|++||.++.+|++++| ||+..++++.|+.++|.+|++.++...+.. .+.++..++..+.||+|+||..+|++|..
T Consensus 151 ~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~ 228 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALM 228 (322)
T ss_dssp EEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHT
T ss_pred EEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999877654 55679999999999999999999999999
Q ss_pred HHhhhc
Q 007255 243 SAVKRS 248 (611)
Q Consensus 243 ~a~~r~ 248 (611)
.++++.
T Consensus 229 ~a~r~~ 234 (322)
T 1xwi_A 229 QPVRKV 234 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 37
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.98 E-value=3e-31 Score=264.47 Aligned_cols=258 Identities=42% Similarity=0.659 Sum_probs=205.4
Q ss_pred ccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccc
Q 007255 10 EHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV 89 (611)
Q Consensus 10 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~ 89 (611)
.+++.| ++|+|++++++.|.+.+..|+..+..+..+++..+.+++|+||||||||++++++|..++..++.++..++
T Consensus 4 ~~~~~~---~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l 80 (274)
T 2x8a_A 4 VPNVTW---ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPEL 80 (274)
T ss_dssp -----------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred CCCCCH---HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHH
Confidence 456677 88999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCC-chhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 007255 90 HKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-REQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS 168 (611)
Q Consensus 90 ~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~t 168 (611)
...+.++....+..+|..+... .|+++++||+|.++..+... .....++.++++..|+...... .++++++
T Consensus 81 ~~~~~~~~~~~i~~vf~~a~~~----~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~----~~i~ia~ 152 (274)
T 2x8a_A 81 LNMYVGESERAVRQVFQRAKNS----APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ----QVFIMAA 152 (274)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHT----CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT----CEEEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHHhc----CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC----CEEEEee
Confidence 8888888888899999887543 48999999999987654211 1122356678888888764332 5899999
Q ss_pred ecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcC---CCCCCcccHHHHHHh--ccCCccccHHHHHHHHHHH
Q 007255 169 TNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK---VPLDANVDLEAIATS--CNGYVGADLEALCREATMS 243 (611)
Q Consensus 169 tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~---~~~~~~~~~~~la~~--~~g~~~~dl~~l~~~a~~~ 243 (611)
||.++.+|++++|+|||+..|+++.|+.++|.+|++.+++. .....+.++..++.. |+||+|.||.++|++|...
T Consensus 153 tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~ 232 (274)
T 2x8a_A 153 TNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASIC 232 (274)
T ss_dssp ESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHH
T ss_pred cCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998854 345567889999987 4599999999999999999
Q ss_pred Hhhhccccc---ccccccchhHHHHHHHHhccCCcccc
Q 007255 244 AVKRSSDAN---ECAGVLSVTMEDWRHARSVVGPSITR 278 (611)
Q Consensus 244 a~~r~~~~~---~~~~~~~v~~ed~~~a~~~i~~~~~~ 278 (611)
++++..... .......++.+||..+...+.|+..+
T Consensus 233 a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 233 ALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp HHHHHC-----------CCBCHHHHHHHHTTCCCCC--
T ss_pred HHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCCh
Confidence 887653221 12234578999999999999887654
No 38
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.98 E-value=1.4e-33 Score=281.81 Aligned_cols=255 Identities=39% Similarity=0.655 Sum_probs=215.2
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
..+..+|++++|++.+++.+.+.+.. +.+++.+..++..+++++||+||||||||++|+++|.+++.+++.++++++..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 45678899999999999999998775 78889999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCC-CCcchhHHHHHHHHHHhcCCCC-CCCeEEEEecCCCc
Q 007255 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSS-TSITVGERLLSTLLTEMDGLEQ-AKGILVLAATNRPH 440 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~~tn~~~ 440 (611)
.+.|.....++.+|..+....|+||||||+|.+..++...+. .......+.++.|+..+++... ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 888888777888999999889999999999999876532111 1112223456778888887543 34589999999999
Q ss_pred ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccc
Q 007255 441 AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATA 520 (611)
Q Consensus 441 ~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~ 520 (611)
.+|++++|+|||+..++++.|+.++|.++|+.++++.....+.++..++..+.||++++|.++|+.|...|..+. ...
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~--~~~ 240 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN--QKE 240 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC--CCS
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCC
Confidence 999999999999999999999999999999999998888888889999999999999999999999988875432 457
Q ss_pred ccHHHHHHHHhhcCCCCCHH
Q 007255 521 VRNRHFQTVKDSLKPALTKE 540 (611)
Q Consensus 521 i~~~~~~~~l~~~~~~~~~~ 540 (611)
|+.+++..++....|....+
T Consensus 241 i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 241 VRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp CCHHHHHTSCTTCCCCCC--
T ss_pred cCHHHHHHHHHHHhhcchhh
Confidence 99999999998888765544
No 39
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.98 E-value=2.3e-31 Score=269.88 Aligned_cols=260 Identities=33% Similarity=0.568 Sum_probs=219.0
Q ss_pred ccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEc
Q 007255 6 RIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVIS 85 (611)
Q Consensus 6 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 85 (611)
.+...++..| ++|+|++++++.|.+.+..|+.+++.+..+|..++.++||+||||||||++++++|++++.+++.++
T Consensus 5 ~~~~~~~~~~---~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 5 TVVEVPQVTW---EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCEECCCCCG---GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccCCCCCH---HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 4456677777 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCC
Q 007255 86 PHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVP 161 (611)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~ 161 (611)
++++...+.|.....++.+|..+... .|+||||||+|.+.+.+.. ......+++..++..++.... ..
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~----~~ 153 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST----KK 153 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHT----CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT----TS
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHhc----CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC----CC
Confidence 99988888888888889999888654 4899999999998764321 112334677889999986532 23
Q ss_pred cEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHH
Q 007255 162 HVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREAT 241 (611)
Q Consensus 162 ~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~ 241 (611)
+++||++||.++.+++++.+++||+..++++.|+.++|.+|++.++.......+.++..++..+.||+|++|.++|++|+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~ 233 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 233 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999998888777888999999999999999999999999
Q ss_pred HHHhhhcccccc-----------------cccccchhHHHHHHHHhccCCcc
Q 007255 242 MSAVKRSSDANE-----------------CAGVLSVTMEDWRHARSVVGPSI 276 (611)
Q Consensus 242 ~~a~~r~~~~~~-----------------~~~~~~v~~ed~~~a~~~i~~~~ 276 (611)
..+..+...... ......++.+||..+...+.|+.
T Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 234 KLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp HHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCC
Confidence 988776432110 01124578888888888877654
No 40
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=1.1e-30 Score=267.50 Aligned_cols=259 Identities=29% Similarity=0.509 Sum_probs=215.4
Q ss_pred ccccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEc
Q 007255 6 RIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVIS 85 (611)
Q Consensus 6 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 85 (611)
.+...++..| ++|+|++.+++.|.+.+..|..+++.+.. +..++.++||+||||||||++|+++|++++.+++.++
T Consensus 8 ~~~~~~~~~~---~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 8 ILSEKPNVKW---EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp SEEECCCCCG---GGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred eeecCCCCCH---HHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence 4556667777 88999999999999999999988887765 5567899999999999999999999999999999999
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCcEE
Q 007255 86 PHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (611)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ 164 (611)
++++...+.+.....++.+|..+... +|+||||||+|.+.+.+. .......+++..++..++..... ..+++
T Consensus 84 ~~~l~~~~~g~~~~~~~~~f~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~v~ 156 (322)
T 3eie_A 84 SSDLVSKWMGESEKLVKQLFAMAREN----KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND---SQGVL 156 (322)
T ss_dssp HHHHHTTTGGGHHHHHHHHHHHHHHT----SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS---CCCEE
T ss_pred hHHHhhcccchHHHHHHHHHHHHHhc----CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc---CCceE
Confidence 99999999999999999999988754 589999999999988653 23344567788899999875432 23699
Q ss_pred EEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHHHH
Q 007255 165 VVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMS 243 (611)
Q Consensus 165 ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~ 243 (611)
+|++||.++.+++++++ ||+..++++.|+.++|.+|++.++...... .+.++..++..+.||++++|..+|++|...
T Consensus 157 vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~ 234 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 234 (322)
T ss_dssp EEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTH
T ss_pred EEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999999877654 556799999999999999999999999988
Q ss_pred Hhhhcccccc-----------------------------------cccccchhHHHHHHHHhccCCccc
Q 007255 244 AVKRSSDANE-----------------------------------CAGVLSVTMEDWRHARSVVGPSIT 277 (611)
Q Consensus 244 a~~r~~~~~~-----------------------------------~~~~~~v~~ed~~~a~~~i~~~~~ 277 (611)
++++...... ......++.+||..+...+.|+..
T Consensus 235 a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~ 303 (322)
T 3eie_A 235 PIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303 (322)
T ss_dssp HHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSC
T ss_pred HHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCC
Confidence 8876543200 001245888999999888887654
No 41
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=1.4e-30 Score=261.35 Aligned_cols=243 Identities=41% Similarity=0.708 Sum_probs=210.4
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcccc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~ 364 (611)
|..+|++++|++.+++.+.+.... +..+..+..+++..+++++|+||||||||++++++|..++..++.+++.++...+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 788999999999999999987764 5567788888888888999999999999999999999999999999999988888
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccch
Q 007255 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDA 444 (611)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~ 444 (611)
.+.....+..+|+.+....|+++|+||+|.+...+............+.+++++..|++......++++++||.|+.+|+
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~ 193 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 193 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence 88888889999999988889999999999987665321111223345678899999998877777999999999999999
Q ss_pred hccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHH
Q 007255 445 ALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNR 524 (611)
Q Consensus 445 al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~ 524 (611)
+++|++||+..++++.|+.++|.+||+.++++..+..++++..++..+.||+++||+++|++|...+..+. ...|+.+
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~--~~~I~~~ 271 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RRKITMK 271 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CCSBCHH
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCCcCHH
Confidence 99999999999999999999999999999988888888999999999999999999999999998887653 3568999
Q ss_pred HHHHHH
Q 007255 525 HFQTVK 530 (611)
Q Consensus 525 ~~~~~l 530 (611)
|+..++
T Consensus 272 dl~~a~ 277 (278)
T 1iy2_A 272 DLEEAA 277 (278)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988775
No 42
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=6.3e-30 Score=264.92 Aligned_cols=256 Identities=29% Similarity=0.521 Sum_probs=205.3
Q ss_pred cccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccc
Q 007255 9 SEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS 88 (611)
Q Consensus 9 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~ 88 (611)
..++..| ++|+|++.+++.|.+.+..|+.++..+.. +..++.++||+||||||||++|+++|++++.+++.+++++
T Consensus 44 ~~~~~~~---~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~ 119 (355)
T 2qp9_X 44 EKPNVKW---EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 119 (355)
T ss_dssp ---CCCG---GGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred cCCCCCH---HHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHH
Confidence 3444445 89999999999999999999888888775 5677899999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 007255 89 VHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVA 167 (611)
Q Consensus 89 ~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ 167 (611)
+...+.+.....++.+|..+... .|+||||||+|.+.+.+.. .......++.+++..++..... ..+++||+
T Consensus 120 l~~~~~g~~~~~~~~~f~~a~~~----~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~---~~~v~vI~ 192 (355)
T 2qp9_X 120 LVSKWMGESEKLVKQLFAMAREN----KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND---SQGVLVLG 192 (355)
T ss_dssp HHSCC---CHHHHHHHHHHHHHT----SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC------CCEEEEE
T ss_pred HhhhhcchHHHHHHHHHHHHHHc----CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc---CCCeEEEe
Confidence 98888899999999999887643 5899999999999876532 2334556788899999865432 23699999
Q ss_pred eecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHHHHHhh
Q 007255 168 STNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSAVK 246 (611)
Q Consensus 168 ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~ 246 (611)
+||.++.+++++++ ||+..++++.|+.++|.+|++.++...+.. .+.++..++..+.||+|++|.++|++|...+++
T Consensus 193 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~ 270 (355)
T 2qp9_X 193 ATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 270 (355)
T ss_dssp EESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999877643 456799999999999999999999999999888
Q ss_pred hccccc-----------------------------------ccccccchhHHHHHHHHhccCCccc
Q 007255 247 RSSDAN-----------------------------------ECAGVLSVTMEDWRHARSVVGPSIT 277 (611)
Q Consensus 247 r~~~~~-----------------------------------~~~~~~~v~~ed~~~a~~~i~~~~~ 277 (611)
+..... .......++.+||..+...+.|+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 271 KIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp HHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSC
T ss_pred HHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCC
Confidence 643210 0001235788888888888877643
No 43
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=5.2e-29 Score=251.00 Aligned_cols=248 Identities=39% Similarity=0.647 Sum_probs=208.2
Q ss_pred cccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 007255 7 IMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISP 86 (611)
Q Consensus 7 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~ 86 (611)
+...++..| ++|+|++++++.|.+.+..++..++.+...|..++.++||+||||||||++++++|+.++.+++.+++
T Consensus 8 ~~~~~~~~~---~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 8 VDERPNVRY---EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp EESSCCCCG---GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred ccCCCCCCH---HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 334445555 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCC----chhhHHHHHHHHHHHhcCCCCCCCCCc
Q 007255 87 HSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR----REQDVRIASQLFTLMDSNKPSKTSVPH 162 (611)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~~~ 162 (611)
+++...+.+.....+..+|..+... .|+||||||+|.+.+.+... .......+..++..++.... ..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~----~~~ 156 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEK----APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA----RGD 156 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHT----CSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS----SSS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHc----CCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC----CCC
Confidence 9999989998888888888887654 48999999999998765432 11222334444555543322 236
Q ss_pred EEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHH
Q 007255 163 VVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATM 242 (611)
Q Consensus 163 v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~ 242 (611)
+++|+|||.++.+++++.+++||+..+.++.|+.++|.+|++.++.......+.++..++..+.|++++++..+++.|..
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~ 236 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGM 236 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999988888888889999999999999999999999998
Q ss_pred HHhhhcccccccccccchhHHHHHHHHhccC
Q 007255 243 SAVKRSSDANECAGVLSVTMEDWRHARSVVG 273 (611)
Q Consensus 243 ~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~ 273 (611)
.+..+..+ .++.+|+..+...+.
T Consensus 237 ~a~~~~~~--------~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 237 NAIRELRD--------YVTMDDFRKAVEKIM 259 (285)
T ss_dssp HHHHTTCS--------SBCHHHHHHHHHHHH
T ss_pred HHHHhccC--------cCCHHHHHHHHHHHH
Confidence 88775432 477888887766543
No 44
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=8.5e-29 Score=262.75 Aligned_cols=244 Identities=39% Similarity=0.594 Sum_probs=207.6
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccc
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~ 94 (611)
-..|++|+|++++++.|.+.+.. +..+..+..+|...|+++||+||||||||++++++|.+++.+++.++++++...+.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~ 90 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFV 90 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHh
Confidence 34569999999999999998865 66788889999999999999999999999999999999999999999999998888
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 007255 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (611)
Q Consensus 95 ~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn 170 (611)
|.....++.+|..+... .|+||||||+|.+.+.+.. ........+.+|+..++.... ..+++||++||
T Consensus 91 g~~~~~~r~lf~~A~~~----~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~----~~~viVIaaTn 162 (476)
T 2ce7_A 91 GVGAARVRDLFAQAKAH----APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS----KEGIIVMAATN 162 (476)
T ss_dssp THHHHHHHHHHHHHHHT----CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG----GGTEEEEEEES
T ss_pred cccHHHHHHHHHHHHhc----CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC----CCCEEEEEecC
Confidence 88888899999988754 4999999999999876532 223344678888888886532 23689999999
Q ss_pred CcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhccc
Q 007255 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD 250 (611)
Q Consensus 171 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~ 250 (611)
.++.+|+++.+++||+..+.++.|+.++|.+|++.+++..++..+.++..++..+.|++|++|.++|++|...+.++..
T Consensus 163 ~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~- 241 (476)
T 2ce7_A 163 RPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGR- 241 (476)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred ChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCC-
Confidence 9999999999999999999999999999999999999988887788899999999999999999999999988765432
Q ss_pred ccccccccchhHHHHHHHHhccCCc
Q 007255 251 ANECAGVLSVTMEDWRHARSVVGPS 275 (611)
Q Consensus 251 ~~~~~~~~~v~~ed~~~a~~~i~~~ 275 (611)
..++.+|+..+...+.+.
T Consensus 242 -------~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 242 -------DKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp -------SSBCHHHHHHHHHHHC--
T ss_pred -------CeecHHHHHHHHHHHhcC
Confidence 257888998888766543
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=6.3e-29 Score=264.89 Aligned_cols=229 Identities=32% Similarity=0.563 Sum_probs=186.2
Q ss_pred cccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEc
Q 007255 7 IMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-GAHLTVIS 85 (611)
Q Consensus 7 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l-~~~~~~v~ 85 (611)
+...++..| ++|+|++++++.|.+.+..|+.++..+.. +..+++++||+||||||||++|+++|+++ +.+++.++
T Consensus 125 ~~~~~~~~~---~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 125 VIERPNVKW---SDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp BCCCCCCCG---GGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred eccCCCCCH---HHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 444555666 88999999999999999988888877653 34577999999999999999999999999 88999999
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCcEE
Q 007255 86 PHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (611)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ 164 (611)
++++...+.|.....++.+|..+... .|+||||||+|.+++.+.. ......+++.+++..++.... ...+++
T Consensus 201 ~~~l~~~~~g~~~~~~~~~f~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~---~~~~v~ 273 (444)
T 2zan_A 201 SSDLVSKWLGESEKLVKNLFQLAREN----KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV---DNDGIL 273 (444)
T ss_dssp CC---------CCCTHHHHHHHHHHS----CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC---CCSSCE
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHc----CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc---CCCCEE
Confidence 99998888888888888899877643 5899999999999876543 334456778888888876432 234689
Q ss_pred EEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHHHH
Q 007255 165 VVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMS 243 (611)
Q Consensus 165 ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~ 243 (611)
||++||.++.++++++| ||+..++++.|+.++|..|++.++...+.. .+.++..++..+.||+|++|..+|++|...
T Consensus 274 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~ 351 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQ 351 (444)
T ss_dssp EEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTH
T ss_pred EEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999999876643 456799999999999999999999999998
Q ss_pred Hhhhc
Q 007255 244 AVKRS 248 (611)
Q Consensus 244 a~~r~ 248 (611)
++++.
T Consensus 352 a~r~~ 356 (444)
T 2zan_A 352 PVRKV 356 (444)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 46
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=4.5e-28 Score=240.24 Aligned_cols=242 Identities=36% Similarity=0.555 Sum_probs=200.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccc
Q 007255 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAH 93 (611)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~ 93 (611)
....+++|+|++.+++.|.+.+.. +..+..+...|...+.+++|+||||||||++++++++.++.+++.++++++...+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 345679999999999999998765 6677777788888899999999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 007255 94 VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST 169 (611)
Q Consensus 94 ~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~tt 169 (611)
.+.....++.+|..+... .|+++||||+|.+.+.... ........+..++..++.... ..++++|++|
T Consensus 86 ~~~~~~~~~~~~~~a~~~----~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~----~~~~~vI~~t 157 (257)
T 1lv7_A 86 VGVGASRVRDMFEQAKKA----APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG----NEGIIVIAAT 157 (257)
T ss_dssp CCCCHHHHHHHHHHHHTT----CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS----SSCEEEEEEE
T ss_pred hhhhHHHHHHHHHHHHHc----CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc----CCCEEEEEee
Confidence 888888888999887643 4899999999999876532 122234567788888886532 2368999999
Q ss_pred cCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcc
Q 007255 170 NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSS 249 (611)
Q Consensus 170 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~ 249 (611)
|.++.+++++.+++||+..+.++.|+.++|.+|++.++...++..+.++..++..+.||++++|.+++++|...+..+..
T Consensus 158 n~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~ 237 (257)
T 1lv7_A 158 NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK 237 (257)
T ss_dssp SCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999888887788899999999999999999999999988876432
Q ss_pred cccccccccchhHHHHHHHHhcc
Q 007255 250 DANECAGVLSVTMEDWRHARSVV 272 (611)
Q Consensus 250 ~~~~~~~~~~v~~ed~~~a~~~i 272 (611)
..++.+|+..+...+
T Consensus 238 --------~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 238 --------RVVSMVEFEKAKDKI 252 (257)
T ss_dssp --------SSBCHHHHHHHHHHH
T ss_pred --------CcccHHHHHHHHHHH
Confidence 257888888776654
No 47
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=5.3e-28 Score=274.92 Aligned_cols=231 Identities=45% Similarity=0.740 Sum_probs=215.2
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
..+.++|++|+|++.+++.|.+.+..|+.+++.+..++..++.++||+||||||||++|+++|.+++.+++.+++.++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCccc
Q 007255 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
.+.|+.+..++.+|..+....|+++||||+|.+..+++.. ......++.++|+..+++......+++|++||+|+.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 9999999999999999999999999999999998876432 2345678899999999998888899999999999999
Q ss_pred chhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Q 007255 443 DAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDI 516 (611)
Q Consensus 443 d~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~ 516 (611)
|+++.|++||+..+.++.|+.++|.+||+.+++++.+..+.++..++..+.||+++++..+|.++...+.++..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~ 427 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999988889999999999999999999999999988877653
No 48
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=235.84 Aligned_cols=238 Identities=32% Similarity=0.501 Sum_probs=177.0
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~ 96 (611)
.|++|+|++++++.|.+.+.. +..+..+...|...++++||+||||||||++++++|++++.+++.++++++...+.+.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGL 82 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTH
T ss_pred CHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccCh
Confidence 348999999999999998765 6777788888999999999999999999999999999999999999999988888888
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCC-----chhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 007255 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-----REQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (611)
Q Consensus 97 ~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~-----~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~ 171 (611)
....+..+|..+... .|+||||||+|.+...+... .......+..++..++.... ..++++|++||.
T Consensus 83 ~~~~~~~~~~~a~~~----~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~----~~~~~vi~~tn~ 154 (262)
T 2qz4_A 83 GAARVRSLFKEARAR----APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT----TDHVIVLASTNR 154 (262)
T ss_dssp HHHHHHHHHHHHHHT----CSEEEEEECC-------------------CHHHHHHHHHHHTCCT----TCCEEEEEEESC
T ss_pred hHHHHHHHHHHHHhc----CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC----CCCEEEEecCCC
Confidence 888888888887643 48999999999997654321 11222445666676765432 236899999999
Q ss_pred cccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCccc--HHHHHHhccCCccccHHHHHHHHHHHHhhhcc
Q 007255 172 VDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD--LEAIATSCNGYVGADLEALCREATMSAVKRSS 249 (611)
Q Consensus 172 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~--~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~ 249 (611)
++.+++++.+++||+..++++.|+.++|.+|++.++.......+.+ ...++..+.|++++++.++++.|...+..+..
T Consensus 155 ~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~ 234 (262)
T 2qz4_A 155 ADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGH 234 (262)
T ss_dssp GGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC------
T ss_pred hhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999988776654433 47899999999999999999998876654321
Q ss_pred cccccccccchhHHHHHHHHhc
Q 007255 250 DANECAGVLSVTMEDWRHARSV 271 (611)
Q Consensus 250 ~~~~~~~~~~v~~ed~~~a~~~ 271 (611)
..++.+|+..+...
T Consensus 235 --------~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 235 --------TSVHTLNFEYAVER 248 (262)
T ss_dssp ----------CCBCCHHHHHHH
T ss_pred --------CCCCHHHHHHHHHH
Confidence 23455555555443
No 49
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=4.1e-27 Score=251.25 Aligned_cols=245 Identities=36% Similarity=0.554 Sum_probs=205.7
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccc
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~ 94 (611)
...|++++|++++++.+.+++.. +..+..+..++...+++++|+||||||||++++++|.+++.+++.++++++...+.
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 34569999999999999998765 66777888889999999999999999999999999999999999999999888888
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 007255 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (611)
Q Consensus 95 ~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn 170 (611)
+.....++.+|+.+.. ..|+++||||+|.+...... ........+++++..++..... ..++++++||
T Consensus 106 g~~~~~v~~lfq~a~~----~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~----~~viviAatn 177 (499)
T 2dhr_A 106 GVGAARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD----TAIVVMAATN 177 (499)
T ss_dssp THHHHHHHHHTTTSSS----SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS----CCCEEEECCS
T ss_pred hhHHHHHHHHHHHHHh----cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC----ccEEEEEecC
Confidence 8777778888876543 24899999999998875432 2233345677888888865432 2579999999
Q ss_pred CcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhccc
Q 007255 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD 250 (611)
Q Consensus 171 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~ 250 (611)
.++.+|+++.|++||+..+.++.|+.++|.+|++.+++...+..+.++..++..+.|++|++|.+++++|...+.++..
T Consensus 178 ~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~- 256 (499)
T 2dhr_A 178 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR- 256 (499)
T ss_dssp CGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCC-
T ss_pred ChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999999999999999999888888888899999999999999999999999887765422
Q ss_pred ccccccccchhHHHHHHHHhccCCcc
Q 007255 251 ANECAGVLSVTMEDWRHARSVVGPSI 276 (611)
Q Consensus 251 ~~~~~~~~~v~~ed~~~a~~~i~~~~ 276 (611)
..++.+|+..+...+.+..
T Consensus 257 -------~~It~~dl~~al~~v~~~~ 275 (499)
T 2dhr_A 257 -------RKITMKDLEEAADRVMMLP 275 (499)
T ss_dssp -------SSCCSHHHHHHHHHHTTCS
T ss_pred -------CccCHHHHHHHHHHHhccc
Confidence 2478888988887765543
No 50
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=240.80 Aligned_cols=251 Identities=33% Similarity=0.538 Sum_probs=200.6
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~ 96 (611)
.+++|+|++.+++.|.+.+..|+..+..+...+ .++.++||+||||||||++++++|++++.+++.++++++...+.+.
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~ 160 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGE 160 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccch
Confidence 448899999999999999998888877665544 5678999999999999999999999999999999999999988888
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccc
Q 007255 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (611)
Q Consensus 97 ~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l 175 (611)
....++.+|..+... +|+||||||+|.+.+.+.. ......+++..++..++..... ...++++|++||.++.+
T Consensus 161 ~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~--~~~~v~vI~atn~~~~l 234 (357)
T 3d8b_A 161 GEKMVRALFAVARCQ----QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS--SEDRILVVGATNRPQEI 234 (357)
T ss_dssp HHHHHHHHHHHHHHT----CSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC------CCCCEEEEEEESCGGGB
T ss_pred HHHHHHHHHHHHHhc----CCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc--CCCCEEEEEecCChhhC
Confidence 888888888877643 5899999999999876532 2334556778888888864322 22369999999999999
Q ss_pred cHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHHHHHhhhccccc--
Q 007255 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDAN-- 252 (611)
Q Consensus 176 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~-- 252 (611)
++++++ ||...++++.|+.++|.+|++.++...... .+..+..++..+.||+++++..+|+.|...+++......
T Consensus 235 ~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~ 312 (357)
T 3d8b_A 235 DEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIA 312 (357)
T ss_dssp CHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----
T ss_pred CHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 999999 999899999999999999999988765543 345689999999999999999999999888777543211
Q ss_pred --ccccccchhHHHHHHHHhccCCcc
Q 007255 253 --ECAGVLSVTMEDWRHARSVVGPSI 276 (611)
Q Consensus 253 --~~~~~~~v~~ed~~~a~~~i~~~~ 276 (611)
.......++.+||..+...+.|+.
T Consensus 313 ~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 313 TITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp ------CCCBCHHHHHHHHHHHGGGC
T ss_pred cccccccCCcCHHHHHHHHHhcCCCC
Confidence 112234678889988888776654
No 51
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=2.5e-26 Score=232.75 Aligned_cols=258 Identities=31% Similarity=0.502 Sum_probs=203.2
Q ss_pred ccccccccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccc
Q 007255 8 MSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH 87 (611)
Q Consensus 8 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~ 87 (611)
...++..| ++++|++.+++.|.+.+..|..+++.+...+ .++.++||+||||||||++++++|++++.+++.++++
T Consensus 13 ~~~~~~~~---~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 88 (297)
T 3b9p_A 13 EGGAKVEW---TDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAA 88 (297)
T ss_dssp CCSSCCCG---GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEEST
T ss_pred cCCCCCCH---HHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHH
Confidence 33445555 8899999999999999998888777766544 4578999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCC-chhhHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 007255 88 SVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-REQDVRIASQLFTLMDSNKPSKTSVPHVVVV 166 (611)
Q Consensus 88 ~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii 166 (611)
.+...+.+.....++.+|..+... .|+||||||+|.+....... .......+..++..++...... ...++++|
T Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~~v~vi 163 (297)
T 3b9p_A 89 SLTSKYVGDGEKLVRALFAVARHM----QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP-DGDRIVVL 163 (297)
T ss_dssp TTSSSSCSCHHHHHHHHHHHHHHT----CSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-------CEEEE
T ss_pred HHhhcccchHHHHHHHHHHHHHHc----CCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC-CCCcEEEE
Confidence 998888888888888888877643 58999999999998765422 2234566778888888754321 12358999
Q ss_pred EeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHHHHHh
Q 007255 167 ASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSAV 245 (611)
Q Consensus 167 ~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~ 245 (611)
++||.++.+++++.+ ||...++++.|+.++|..|++.++...... .+..+..++..+.|++++++..+++.|...++
T Consensus 164 ~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~ 241 (297)
T 3b9p_A 164 AATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 241 (297)
T ss_dssp EEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHH
T ss_pred eecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999988765432 34468899999999999999999999988887
Q ss_pred hhccccc----ccccccchhHHHHHHHHhccCCcc
Q 007255 246 KRSSDAN----ECAGVLSVTMEDWRHARSVVGPSI 276 (611)
Q Consensus 246 ~r~~~~~----~~~~~~~v~~ed~~~a~~~i~~~~ 276 (611)
++..... .......++.+||..+...+.|+.
T Consensus 242 r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 242 RELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp HTCC--------CCCCCCCCHHHHHHHTTSCCCSS
T ss_pred HHHhhhhcccccccccCCcCHHHHHHHHHHcCCCC
Confidence 7643211 111234688999999888777654
No 52
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.95 E-value=3.9e-26 Score=225.85 Aligned_cols=238 Identities=37% Similarity=0.593 Sum_probs=193.8
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccc
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~ 94 (611)
...+++++|++++++.+.+.... +..+..+...+...+.+++|+||||||||+++++++..++..++.+++.++...+.
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 90 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 90 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHh
Confidence 34558999999999999987654 56677788889999999999999999999999999999999999999888776666
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 007255 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (611)
Q Consensus 95 ~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn 170 (611)
+.....+..+|+.+... .|+++++||+|.+...... ........+..++..++..... ..+++++++|
T Consensus 91 ~~~~~~i~~~~~~~~~~----~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~----~~~i~~a~t~ 162 (254)
T 1ixz_A 91 GVGAARVRDLFETAKRH----APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD----TAIVVMAATN 162 (254)
T ss_dssp THHHHHHHHHHHHHTTS----SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT----CCEEEEEEES
T ss_pred hHHHHHHHHHHHHHHhc----CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC----CCEEEEEccC
Confidence 76667777888776432 4899999999988765432 1223345667788888765432 2488999999
Q ss_pred CcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhccc
Q 007255 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD 250 (611)
Q Consensus 171 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~ 250 (611)
.++.+|+++.+++||+..++++.|+.++|.+|++.+.....+..+.++..++..+.|++++||.+++++|...+..+..
T Consensus 163 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~- 241 (254)
T 1ixz_A 163 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR- 241 (254)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred CchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC-
Confidence 9999999999999999999999999999999999998888777788899999999999999999999999887765421
Q ss_pred ccccccccchhHHHHHHHH
Q 007255 251 ANECAGVLSVTMEDWRHAR 269 (611)
Q Consensus 251 ~~~~~~~~~v~~ed~~~a~ 269 (611)
..++.+|+..+.
T Consensus 242 -------~~I~~~dl~~a~ 253 (254)
T 1ixz_A 242 -------RKITMKDLEEAA 253 (254)
T ss_dssp -------SSBCHHHHHHHT
T ss_pred -------CCcCHHHHHHHh
Confidence 247777776653
No 53
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.95 E-value=2.3e-28 Score=261.91 Aligned_cols=362 Identities=20% Similarity=0.309 Sum_probs=234.4
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEcccccccccc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG--AHLTVISPHSVHKAHV 94 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~--~~~~~v~~~~~~~~~~ 94 (611)
.+++++|++++++.+..++... ..|..+++++||+||||||||++|+++|++++ .+++.++++++...+.
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~ 106 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEI 106 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSS
T ss_pred chhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhh
Confidence 3589999999999998877432 23556778999999999999999999999999 8999999999999999
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhh--------------------HHHHHHHHHHHhcCC
Q 007255 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQD--------------------VRIASQLFTLMDSNK 154 (611)
Q Consensus 95 ~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~--------------------~~~~~~ll~~l~~~~ 154 (611)
++++. +...|..+.. .....|+||||||+|.+++.+....... .++...++..++...
T Consensus 107 ~~~~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~ 184 (456)
T 2c9o_A 107 KKTEV-LMENFRRAIG-LRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKER 184 (456)
T ss_dssp CHHHH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTT
T ss_pred hhhHH-HHHHHHHHHh-hhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhcc
Confidence 98887 8888888732 1234589999999999998764321100 011223555555322
Q ss_pred CCCCCCCcEEEEEeecCcccccHHhhccCCcce--EEEccCCC--HHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCcc
Q 007255 155 PSKTSVPHVVVVASTNRVDAIDPALRRSGRFDA--EVEVTVPT--AEERFEILKLYTKKVPLDANVDLEAIATSCNGYVG 230 (611)
Q Consensus 155 ~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~--~i~~~~p~--~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~ 230 (611)
.. ....++|++|||.++.+|+++.|++||+. .+.++.|+ .++|.+|++.+.. .+++.++..++| |
T Consensus 185 ~~--~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 185 VE--AGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp CC--TTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred CC--CCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 11 12245666899999999999999999987 55667774 4667777654432 267888888888 8
Q ss_pred ccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhccCCcccccccccCCCcccccccchhHHHHHHHHHhhccC
Q 007255 231 ADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPI 310 (611)
Q Consensus 231 ~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~ 310 (611)
.|+.++|.....-. .. .+.. ++ .+.+.+.+.++...
T Consensus 254 adl~~l~~~i~~p~---~~---------~I~~----------------------------~l--r~~I~~~l~~~~~~-- 289 (456)
T 2c9o_A 254 QDILSMMGQLMKPK---KT---------EITD----------------------------KL--RGEINKVVNKYIDQ-- 289 (456)
T ss_dssp -----------------------------------------------------------------CHHHHHHHHHHHT--
T ss_pred hHHHHHHhhhcccc---hh---------hHHH----------------------------HH--HHHHHHHHHHHHHh--
Confidence 88888775321000 00 0000 00 00011111111110
Q ss_pred CChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEc
Q 007255 311 KHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFD 390 (611)
Q Consensus 311 ~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iD 390 (611)
+. ....|.|+|||
T Consensus 290 ---------g~----------------------------------------------------------~~v~~~VliID 302 (456)
T 2c9o_A 290 ---------GI----------------------------------------------------------AELVPGVLFVD 302 (456)
T ss_dssp ---------TS----------------------------------------------------------EEEEECEEEEE
T ss_pred ---------cc----------------------------------------------------------ccccceEEEEe
Confidence 00 00113599999
Q ss_pred ccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCC-------------CcccchhccCCCCccceee
Q 007255 391 EADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNR-------------PHAIDAALMRPGRFDLVLY 457 (611)
Q Consensus 391 eid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~-------------~~~ld~al~r~gRf~~~i~ 457 (611)
|+|.+ .....+.|++.|+ ++...+ ||.+||. |+.+++.+++ ||.. +.
T Consensus 303 Ea~~l--------------~~~a~~aLlk~lE--e~~~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~ 362 (456)
T 2c9o_A 303 EVHML--------------DIECFTYLHRALE--SSIAPI-VIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IR 362 (456)
T ss_dssp SGGGC--------------BHHHHHHHHHHTT--STTCCE-EEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EE
T ss_pred chhhc--------------CHHHHHHHHHHhh--ccCCCE-EEEecCCccccccccccccccccCChhHHh--hcce-ee
Confidence 99988 2568899999998 455555 4444432 7788999998 9985 69
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Q 007255 458 VPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEET-ELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSL 533 (611)
Q Consensus 458 ~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~-~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~ 533 (611)
|++|+.++..++++..+...... ++..+..++..+ .| +++....+++.|...|..+. ...|+.+|+..++..+
T Consensus 363 ~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~--~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 363 TMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKING--KDSIEKEHVEEISELF 437 (456)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTT--CSSBCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcC--CCccCHHHHHHHHHHh
Confidence 99999999999999766433322 334467788877 66 88999999999888887654 4569999999988654
No 54
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=5.3e-26 Score=239.01 Aligned_cols=250 Identities=31% Similarity=0.490 Sum_probs=194.1
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~ 96 (611)
.+++|+|++.+++.|.+++..+..+++.+...+ .++.++||+||||||||++|+++|++++.+++.++++.+...+.+.
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~ 191 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGE 191 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccch
Confidence 458999999999999999999888877766655 4568999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccc
Q 007255 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (611)
Q Consensus 97 ~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l 175 (611)
....+..+|..+... .|+||||||+|.++..... .......++..++..++..... ...+++||++||.++.+
T Consensus 192 ~~~~~~~~~~~a~~~----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~v~vI~atn~~~~l 265 (389)
T 3vfd_A 192 GEKLVRALFAVAREL----QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA--GDDRVLVMGATNRPQEL 265 (389)
T ss_dssp CHHHHHHHHHHHHHS----SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-------CEEEEEEESCGGGC
T ss_pred HHHHHHHHHHHHHhc----CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc--CCCCEEEEEecCCchhc
Confidence 888899999887754 4899999999999876532 2334567778888888865432 12369999999999999
Q ss_pred cHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHHHHHhhhccccc--
Q 007255 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDAN-- 252 (611)
Q Consensus 176 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~-- 252 (611)
++++++ ||...++++.|+.++|..|++.++...... .+..+..++..+.|++++++..+++.|...++++.....
T Consensus 266 ~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~ 343 (389)
T 3vfd_A 266 DEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVK 343 (389)
T ss_dssp CHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---
T ss_pred CHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999999 998899999999999999999998775443 334689999999999999999999999888877643321
Q ss_pred --ccccccchhHHHHHHHHhccCCc
Q 007255 253 --ECAGVLSVTMEDWRHARSVVGPS 275 (611)
Q Consensus 253 --~~~~~~~v~~ed~~~a~~~i~~~ 275 (611)
.......++.+||..+...+.++
T Consensus 344 ~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 344 NMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred ccchhhcCCcCHHHHHHHHHHcCCC
Confidence 11223457888888887766554
No 55
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=4e-28 Score=242.22 Aligned_cols=246 Identities=35% Similarity=0.508 Sum_probs=194.4
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccc
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~ 94 (611)
...+++|+|++.+++.|.+++.. +..++.+...+...+.++||+||||||||++++++|++++.+++.++++.+...+.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~ 85 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFV 85 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCS
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhc
Confidence 34568999999999999998765 77888888999999999999999999999999999999999999999998877777
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCC-----chhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 007255 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-----REQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST 169 (611)
Q Consensus 95 ~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~-----~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~tt 169 (611)
+.....++.+|..+... .|+||||||+|.+...+... .......+..++..++.... ...++++|+||
T Consensus 86 ~~~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~v~vi~tt 158 (268)
T 2r62_A 86 GLGASRVRDLFETAKKQ----APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS---ENAPVIVLAAT 158 (268)
T ss_dssp SSCSSSSSTTHHHHHHS----CSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC---SCSCCEEEECB
T ss_pred chHHHHHHHHHHHHHhc----CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc---CCCCEEEEEec
Confidence 66665666777776543 48999999999998754211 11111234455555554322 22358999999
Q ss_pred cCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcc
Q 007255 170 NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSS 249 (611)
Q Consensus 170 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~ 249 (611)
|.++.+++++.+++||+..++++.|+.++|.+|++.++.......+.++..++..+.|++|+++.++++.|...+..+.
T Consensus 159 n~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~- 237 (268)
T 2r62_A 159 NRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN- 237 (268)
T ss_dssp SCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC-
T ss_pred CCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 9999999999999999999999999999999999999988877777778899999999999999999999987765432
Q ss_pred cccccccccchhHHHHHHHHhccCCcc
Q 007255 250 DANECAGVLSVTMEDWRHARSVVGPSI 276 (611)
Q Consensus 250 ~~~~~~~~~~v~~ed~~~a~~~i~~~~ 276 (611)
...++.+++..+.....+..
T Consensus 238 -------~~~i~~~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 238 -------QKEVRQQHLKEAVERGIAGL 257 (268)
T ss_dssp -------CCSCCHHHHHTSCTTCCCCC
T ss_pred -------cCCcCHHHHHHHHHHHhhcc
Confidence 12477888877766555543
No 56
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.94 E-value=5.3e-25 Score=220.65 Aligned_cols=239 Identities=36% Similarity=0.590 Sum_probs=192.7
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccc
Q 007255 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAH 93 (611)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~ 93 (611)
....+++++|++++++.+.+.... +..+..+...++..+.+++|+||||||||+++++++..++..++.+++.++....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 445669999999999999987654 5666778888999999999999999999999999999999999999988877666
Q ss_pred ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 007255 94 VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST 169 (611)
Q Consensus 94 ~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~tt 169 (611)
.+.....+..+|+.+... .|+++++||+|.+...... ........+..++..++..... ..+++++++
T Consensus 114 ~~~~~~~i~~~~~~~~~~----~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~----~~~i~~a~t 185 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRH----APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD----TAIVVMAAT 185 (278)
T ss_dssp TTHHHHHHHHHHHHHHTS----CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT----CCEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhc----CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC----CCEEEEEec
Confidence 666667777888776532 4899999999988754321 1222344556677777654322 248899999
Q ss_pred cCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcc
Q 007255 170 NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSS 249 (611)
Q Consensus 170 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~ 249 (611)
|.++.+|+++.+++||+..++++.|+.++|.+|++.+++...+..+.++..++..+.|+++++|.+++++|...+..+..
T Consensus 186 ~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~ 265 (278)
T 1iy2_A 186 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 265 (278)
T ss_dssp SCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999998887777788899999999999999999999999887765321
Q ss_pred cccccccccchhHHHHHHHH
Q 007255 250 DANECAGVLSVTMEDWRHAR 269 (611)
Q Consensus 250 ~~~~~~~~~~v~~ed~~~a~ 269 (611)
..++.+|+..+.
T Consensus 266 --------~~I~~~dl~~a~ 277 (278)
T 1iy2_A 266 --------RKITMKDLEEAA 277 (278)
T ss_dssp --------CSBCHHHHHHHT
T ss_pred --------CCcCHHHHHHHh
Confidence 247777776653
No 57
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=1.1e-26 Score=234.24 Aligned_cols=176 Identities=20% Similarity=0.273 Sum_probs=139.0
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccccccchHHHHHHHHHHH----HhcCCcEEEEcccccc
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRA----RLAAPSIIFFDEADVV 395 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l 395 (611)
+.++|+++|||||||||||++|+++|++++.+++.++++++.++|.|..+..++.+|..+ +...|+||||||+|.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567789999999999999999999999999999999999999999999999999999998 4668999999999999
Q ss_pred cccCCCCCCCCcchhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHH
Q 007255 396 GAKRGGSSSTSITVGERLLSTLLTEMDGLE-----------QAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLE 464 (611)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~ 464 (611)
++++++... ......++.+.|+..||+.. ...+++||+|||.++.+|++++|+|||+..+++ |+.+
T Consensus 112 ~~~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~ 188 (293)
T 3t15_A 112 AGRMGGTTQ-YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCHH
T ss_pred cCCCCCCcc-ccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCHH
Confidence 875543221 12234577899999998443 456799999999999999999999999988874 6999
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHH
Q 007255 465 ARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEG 502 (611)
Q Consensus 465 ~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~ 502 (611)
+|.+|++.++.. .+++++.++..++||++++|..
T Consensus 189 ~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 189 DRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 999999977763 3567889999999999998864
No 58
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.91 E-value=2.9e-23 Score=216.96 Aligned_cols=383 Identities=20% Similarity=0.248 Sum_probs=188.8
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc-ccccc
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGL-KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK-AHVGE 96 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~-~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~-~~~~~ 96 (611)
++|+|++++|+.|..++..++.+.+....++. .++.++||+||||||||++++++|+.++.+++.++++.+.. .+.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 47899999999999999887665544433333 25689999999999999999999999999999999988877 47774
Q ss_pred -hHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEe-ecCccc
Q 007255 97 -SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS-TNRVDA 174 (611)
Q Consensus 97 -~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~t-tn~~~~ 174 (611)
.+..++.+|..+... +++||++.+.... ......+++.+|+..||...... .+ +++ ||.++.
T Consensus 95 d~e~~lr~lf~~a~~~--------~~~De~d~~~~~~--~~~~e~rvl~~LL~~~dg~~~~~----~v--~a~~TN~~~~ 158 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL--------VRQQEIAKNRARA--EDVAEERILDALLPPAKNQWGEV----EN--HDSHSSTRQA 158 (444)
T ss_dssp CTHHHHHHHHHHHHHH--------HHHHHHHSCC----------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc--------chhhhhhhhhccc--hhhHHHHHHHHHHHHhhcccccc----cc--ccccccCHHH
Confidence 788889999887653 3489988765432 23345578889999988764321 22 444 999999
Q ss_pred ccHHhhccCCcceEEEccCCCHH-HHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccc
Q 007255 175 IDPALRRSGRFDAEVEVTVPTAE-ERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANE 253 (611)
Q Consensus 175 l~~~l~~~~Rf~~~i~~~~p~~~-~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~ 253 (611)
+|+++++++||+..|+++.|+.. .+.+|+.. .+ +..+ +.++..+...
T Consensus 159 ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~--~g--------~~~~--------~~~~~~~~~~-------------- 206 (444)
T 1g41_A 159 FRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP--PG--------MEEM--------TNQLQSLFQN-------------- 206 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCCCcceEEEEcCCCCccchhhhhcC--CC--------hHHH--------HHHHHHHHHh--------------
Confidence 99999999999999999999987 66666553 00 0000 0001000000
Q ss_pred cccccchhHHHHHHHHhccCCcccccccccCCCcccccccchhHHHHH--HHHHhhccCCChhHHhhcCCCCCCCcceeC
Q 007255 254 CAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKK--LQQAVEWPIKHSTAFSRLGISPVRGALLHG 331 (611)
Q Consensus 254 ~~~~~~v~~ed~~~a~~~i~~~~~~~~~~~~~~~~~~~i~g~~~~k~~--l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~G 331 (611)
+.+....++. +.++.. +|
T Consensus 207 --------------------------------------~~~~~~~~~~~~v~~a~~-------------------~l--- 226 (444)
T 1g41_A 207 --------------------------------------LGSDKTKKRKMKIKDALK-------------------AL--- 226 (444)
T ss_dssp ----------------------------------------------------------------------------C---
T ss_pred --------------------------------------hcCCCCcceeeeHHHHHH-------------------HH---
Confidence 0000000000 000000 00
Q ss_pred CCCCChHHHHHHHHHHhCCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchh-
Q 007255 332 PPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVG- 410 (611)
Q Consensus 332 p~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~- 410 (611)
.... ..+.+ +.+...+.....+... .|+|+||+|++..+.+. . ..+.+
T Consensus 227 ---------------------~~~e----~~~l~-~~~~~~~~ai~~ae~~--~il~~DEidki~~~~~~--~-~~D~s~ 275 (444)
T 1g41_A 227 ---------------------IDDE----AAKLI-NPEELKQKAIDAVEQN--GIVFIDEIDKICKKGEY--S-GADVSR 275 (444)
T ss_dssp ---------------------CGGG----SCSSC-CHHHHHHHHHHHHHHH--CEEEEETGGGGSCCSSC--S-SSHHHH
T ss_pred ---------------------HHHH----HHHcc-CHHHHHHHHHHHhccC--CeeeHHHHHHHhhccCC--C-CCCchH
Confidence 0000 01111 2344444555554322 29999999999765331 1 22333
Q ss_pred HHHHHHHHHHhcCCC--------CCCCeEEEEec----CCCcccchhccCCCCccceeecCCCCHHHHHHHHHH------
Q 007255 411 ERLLSTLLTEMDGLE--------QAKGILVLAAT----NRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRV------ 472 (611)
Q Consensus 411 ~~~~~~ll~~l~~~~--------~~~~~~vI~~t----n~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~------ 472 (611)
.-++.+||..||+.. ..++++||+|. +.|.++.|.|+. ||+.++.|+.++.++..+|+..
T Consensus 276 egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~ 353 (444)
T 1g41_A 276 EGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLT 353 (444)
T ss_dssp HHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHH
T ss_pred HHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHH
Confidence 347789999999731 35679999887 345556688887 9999999999999999999931
Q ss_pred --H-----hcCCCCC-CcccHHHHHHh-------CCCCCHHHHHHHHHHHHHHHHHhhc----ccccccHHHHHHHHhhc
Q 007255 473 --H-----TRNMKVG-DDVDLRSIAEE-------TELFTGAELEGLCREAGIVALREDI----SATAVRNRHFQTVKDSL 533 (611)
Q Consensus 473 --~-----~~~~~~~-~~~~~~~la~~-------~~g~s~~~i~~~~~~a~~~a~~~~~----~~~~i~~~~~~~~l~~~ 533 (611)
+ +.+..+. ++..+..+++. +...-.+.++.++..++.....+.. ....|+..++...+
T Consensus 354 ~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l--- 430 (444)
T 1g41_A 354 EQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADAL--- 430 (444)
T ss_dssp HHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHH---
T ss_pred HHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhc---
Confidence 1 1122211 33445666653 3455566777766666555544432 22357777777655
Q ss_pred CCCCCHHHHHHH
Q 007255 534 KPALTKEEIDSY 545 (611)
Q Consensus 534 ~~~~~~~~~~~~ 545 (611)
.+.+..+++.+|
T Consensus 431 ~~~~~~~dl~~~ 442 (444)
T 1g41_A 431 GEVVENEDLSRF 442 (444)
T ss_dssp TTTTTCHHHHHH
T ss_pred CccccCCChhcc
Confidence 555666666655
No 59
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=1.9e-25 Score=239.25 Aligned_cols=205 Identities=23% Similarity=0.314 Sum_probs=146.3
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhC--CcEEeecchhhc
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE--ASFFSLSGAELY 361 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~--~~~~~~~~~~~~ 361 (611)
.|...|++++|++.+++.+.+++... +.+..+++++||+||||||||++|+++|++++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 35667999999999999988876531 23566778999999999999999999999999 999999999999
Q ss_pred cccccchHHHHHHHHHHH---HhcCCcEEEEcccccccccCCCCCCCCc----------------chhHHHHHHHHHHhc
Q 007255 362 SMYVGESEALLRNTFQRA---RLAAPSIIFFDEADVVGAKRGGSSSTSI----------------TVGERLLSTLLTEMD 422 (611)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a---~~~~p~il~iDeid~l~~~~~~~~~~~~----------------~~~~~~~~~ll~~l~ 422 (611)
++|.|+++. ++..|..+ +...|+||||||+|.++++++....+.. ....++.+.++..++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999987 89999998 7788999999999999988854422110 011133344665554
Q ss_pred --CCCCCCCeEEEEecCCCcccchhccCCCCccc--eeecCCCC--HHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCC
Q 007255 423 --GLEQAKGILVLAATNRPHAIDAALMRPGRFDL--VLYVPPPD--LEARHEILRVHTRNMKVGDDVDLRSIAEETELFT 496 (611)
Q Consensus 423 --~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~--~i~~~~p~--~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s 496 (611)
++...+.++|++|||+++.+|++++||||||. .+++|.|+ .++|.+|++.+.. .+++.++..++|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--
Confidence 33445556677999999999999999999998 67777775 4778888764332 378899999999
Q ss_pred HHHHHHHHHH
Q 007255 497 GAELEGLCRE 506 (611)
Q Consensus 497 ~~~i~~~~~~ 506 (611)
|+|+.++|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999854
No 60
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.89 E-value=4.1e-23 Score=207.98 Aligned_cols=183 Identities=21% Similarity=0.353 Sum_probs=138.9
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 48 ~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
.+.++|.++||+||||||||++++++|++++.+++.++++++...+.|.....++.+|..+........|+||||||+|.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 35678899999999999999999999999999999999999999999999999999999886544456799999999999
Q ss_pred cCCCCCCCch---hhHHHHHHHHHHHhcCCC-------CCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHH
Q 007255 128 LCPRRDHRRE---QDVRIASQLFTLMDSNKP-------SKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAE 197 (611)
Q Consensus 128 l~~~~~~~~~---~~~~~~~~ll~~l~~~~~-------~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~ 197 (611)
+++..++... ....++..|++++|.... ......++++|+|||.++.+|++++|++||+..++ .|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 9885442222 344677899999984321 11123468999999999999999999999987776 57999
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHH
Q 007255 198 ERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEAL 236 (611)
Q Consensus 198 ~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l 236 (611)
+|.+|++.++... ..+...++..+.||++.++..+
T Consensus 189 ~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 189 DRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp HHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHH
T ss_pred HHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHH
Confidence 9999999887633 4568899999999999998643
No 61
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=1.5e-21 Score=198.67 Aligned_cols=224 Identities=17% Similarity=0.244 Sum_probs=171.8
Q ss_pred ccccchhHHHHHHHHHhhccCCChhHHhhcCCCC---CCCcceeCCCCCChHHHHHHHHHHh-------CCcEEeecchh
Q 007255 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISP---VRGALLHGPPGCSKTTLAKAAAHAA-------EASFFSLSGAE 359 (611)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~---~~~~Ll~Gp~G~GKT~la~ala~~~-------~~~~~~~~~~~ 359 (611)
.+++|++.+++.+.+.+..+. .+..+.++|..+ +.++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred HHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 379999999999999887643 355555555443 4569999999999999999999998 34899999999
Q ss_pred hccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 007255 360 LYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRP 439 (611)
Q Consensus 360 ~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 439 (611)
+.+.+.|.....+..+|..+ .++||||||+|.+.+.+.. .......++.|+..|+. ...++++|++||.+
T Consensus 110 l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 110 LVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMEN--NRDDLVVILAGYAD 179 (309)
T ss_dssp TCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHH--CTTTCEEEEEECHH
T ss_pred hhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhc--CCCCEEEEEeCChH
Confidence 99999999988888888776 4679999999999755432 23356788999999983 55678999999876
Q ss_pred c-----ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHh-------CCCCCHHHHHHHHHH
Q 007255 440 H-----AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEE-------TELFTGAELEGLCRE 506 (611)
Q Consensus 440 ~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~-------~~g~s~~~i~~~~~~ 506 (611)
+ .++|++++ ||+.++.|+.|+.+++.+|++.++...... ++..+..++.. ...-+.+++.+++..
T Consensus 180 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~ 257 (309)
T 3syl_A 180 RMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDR 257 (309)
T ss_dssp HHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence 4 35799998 999999999999999999999888765543 23335556654 222358999999999
Q ss_pred HHHHHHHhhccc--ccccHHHH
Q 007255 507 AGIVALREDISA--TAVRNRHF 526 (611)
Q Consensus 507 a~~~a~~~~~~~--~~i~~~~~ 526 (611)
+...+..+.+.. ..++.+++
T Consensus 258 a~~~~~~r~~~~~~~~~~~~~l 279 (309)
T 3syl_A 258 ARLRQANRLFTASSGPLDARAL 279 (309)
T ss_dssp HHHHHHHHHHHC---CEEHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHH
Confidence 988776665432 44554444
No 62
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.84 E-value=3.4e-20 Score=188.67 Aligned_cols=216 Identities=21% Similarity=0.269 Sum_probs=165.0
Q ss_pred ccc-ccCCcHHHHHHHHHHHHhhhhCchHHHhcCCC---CCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEc
Q 007255 17 AEE-AIGGNRAAVEALRELITFPLLYSSQAQKLGLK---WPRGLLLYGPPGTGKTSLVRAVVREC-------GAHLTVIS 85 (611)
Q Consensus 17 ~~~-~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~---~~~~iLl~Gp~GtGKT~la~~la~~l-------~~~~~~v~ 85 (611)
.++ +|+|++++++.|.+.+..+.. +......|+. ++.++||+||||||||++++++|+.+ ..+++.++
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 106 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT 106 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC
T ss_pred HHHHHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc
Confidence 344 799999999999998877543 5555555654 34579999999999999999999988 34899999
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 007255 86 PHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVV 165 (611)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~i 165 (611)
++++...+.+.....+...|..+. ++||||||+|.++...+. .......+..|+..++... .++++
T Consensus 107 ~~~l~~~~~g~~~~~~~~~~~~~~-------~~vl~iDEid~l~~~~~~-~~~~~~~~~~Ll~~l~~~~------~~~~~ 172 (309)
T 3syl_A 107 RDDLVGQYIGHTAPKTKEVLKRAM-------GGVLFIDEAYYLYRPDNE-RDYGQEAIEILLQVMENNR------DDLVV 172 (309)
T ss_dssp GGGTCCSSTTCHHHHHHHHHHHHT-------TSEEEEETGGGSCCCC----CCTHHHHHHHHHHHHHCT------TTCEE
T ss_pred HHHhhhhcccccHHHHHHHHHhcC-------CCEEEEEChhhhccCCCc-ccccHHHHHHHHHHHhcCC------CCEEE
Confidence 999998888888888888887763 679999999999865432 2335578889999998743 25688
Q ss_pred EEeecCcc-----cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcc-cHHHHHHhc-------cCCcccc
Q 007255 166 VASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSC-------NGYVGAD 232 (611)
Q Consensus 166 i~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~~~~la~~~-------~g~~~~d 232 (611)
|+++|... .++|++++ ||...++|++|+.+++.+|++.++.......+. .+..++... ...++++
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~ 250 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARS 250 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHH
Confidence 88887643 35799998 998899999999999999999998766543222 245555442 2234788
Q ss_pred HHHHHHHHHHHHhhhcc
Q 007255 233 LEALCREATMSAVKRSS 249 (611)
Q Consensus 233 l~~l~~~a~~~a~~r~~ 249 (611)
+.++++.+...+..+..
T Consensus 251 l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 251 IRNALDRARLRQANRLF 267 (309)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998877666543
No 63
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.83 E-value=4.1e-20 Score=192.91 Aligned_cols=219 Identities=20% Similarity=0.311 Sum_probs=161.3
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCC--cEEeecchhhcc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA--SFFSLSGAELYS 362 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~--~~~~~~~~~~~~ 362 (611)
|..+|++++|++..++.+....... ..+..+++++||+||||||||++|+++|+.++. +++.+++..+..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 4455999999999988866554321 114455689999999999999999999999975 777887766444
Q ss_pred ccccc-------------------------------------------------hHHHHHHHHHHHHh-----c----CC
Q 007255 363 MYVGE-------------------------------------------------SEALLRNTFQRARL-----A----AP 384 (611)
Q Consensus 363 ~~~g~-------------------------------------------------~~~~~~~~~~~a~~-----~----~p 384 (611)
.+.+. ....++..+..+.. . .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 33222 12334444443322 1 26
Q ss_pred cEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEec-----------CCCcccchhccCCCCcc
Q 007255 385 SIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAAT-----------NRPHAIDAALMRPGRFD 453 (611)
Q Consensus 385 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t-----------n~~~~ld~al~r~gRf~ 453 (611)
+||||||+|.+. ....+.|++.++. ....+++++++ |.++.+++++++ ||.
T Consensus 191 ~vl~IDEi~~l~--------------~~~~~~L~~~le~--~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHMLD--------------IESFSFLNRALES--DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGSB--------------HHHHHHHHHHTTC--TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhccccC--------------hHHHHHHHHHhhC--cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 799999999872 4567888888873 34455555544 347789999999 998
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Q 007255 454 LVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDS 532 (611)
Q Consensus 454 ~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~ 532 (611)
. +.|++|+.+++.+|++..+...... ++..++.+++.+.+.+++++.++|..|...|..+. ...|+.+++..++..
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~--~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK--GTEVQVDDIKRVYSL 329 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHH
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHH
Confidence 5 8999999999999999777654433 34557889999884489999999999998887653 568999999999976
No 64
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.82 E-value=3.9e-21 Score=227.83 Aligned_cols=157 Identities=19% Similarity=0.215 Sum_probs=112.8
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCC----------hhHHhh------cCC----------CCCCC--cceeCCCC
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKH----------STAFSR------LGI----------SPVRG--ALLHGPPG 334 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~----------~~~~~~------~~~----------~~~~~--~Ll~Gp~G 334 (611)
..+.++|+++.|++++|+.+.+.+.||+.+ ++.++. .|. .+|+| +|+|||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 345589999999999999999999998844 445554 222 24455 99999999
Q ss_pred CChHHHHHHHHHHh---CCcEEeecchh----hc--------cccccc----hHHHHHHHHHHHHhcCCcEEEEcccccc
Q 007255 335 CSKTTLAKAAAHAA---EASFFSLSGAE----LY--------SMYVGE----SEALLRNTFQRARLAAPSIIFFDEADVV 395 (611)
Q Consensus 335 ~GKT~la~ala~~~---~~~~~~~~~~~----~~--------~~~~g~----~~~~~~~~~~~a~~~~p~il~iDeid~l 395 (611)
||||++|++++.+. +.+.+.++..+ ++ ++|.++ +|+.++.+|..|+...|+++|+|+++.|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999999887 34444444443 33 567777 8999999999999999999999999999
Q ss_pred cccC---CCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCc
Q 007255 396 GAKR---GGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPH 440 (611)
Q Consensus 396 ~~~~---~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 440 (611)
++.+ +..++.......|+++++|..|+++....+++|| +||+..
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~~ 1219 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQIR 1219 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECEE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecccc
Confidence 9884 3333323356778999999999988888888888 777643
No 65
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.82 E-value=2.3e-19 Score=221.71 Aligned_cols=326 Identities=16% Similarity=0.168 Sum_probs=199.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEcccccccccccchHHHHHHHHHHHHh----------hh-hcCCCeE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC-GAHLTVISPHSVHKAHVGESEKALREAFSQASS----------HA-LSGKPSV 119 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l-~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~----------~~-~~~~~~i 119 (611)
..+++||+||||||||++|+.++... +..++.++.+.... ...+...++.... .+ ..++++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 34799999999999999996555444 66777777654432 2234444443211 01 1345789
Q ss_pred EEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCC------CCCCCCcEEEEEeecCcc-----cccHHhhccCCcceE
Q 007255 120 VFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP------SKTSVPHVVVVASTNRVD-----AIDPALRRSGRFDAE 188 (611)
Q Consensus 120 l~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~------~~~~~~~v~ii~ttn~~~-----~l~~~l~~~~Rf~~~ 188 (611)
+||||+|..... ..+.....++++++ ++.... ......++.+|++||++. .+++++.| || ..
T Consensus 1340 lFiDEinmp~~d-~yg~q~~lelLRq~---le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~v 1412 (2695)
T 4akg_A 1340 LFCDEINLPKLD-KYGSQNVVLFLRQL---MEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AI 1412 (2695)
T ss_dssp EEEETTTCSCCC-SSSCCHHHHHHHHH---HHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EE
T ss_pred EEeccccccccc-ccCchhHHHHHHHH---HhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eE
Confidence 999999853332 23333344444444 443211 111123589999999984 89999999 98 58
Q ss_pred EEccCCCHHHHHHHHHHhhcCCC---------------------------------CCCcccHHHHHHhccCCcc-----
Q 007255 189 VEVTVPTAEERFEILKLYTKKVP---------------------------------LDANVDLEAIATSCNGYVG----- 230 (611)
Q Consensus 189 i~~~~p~~~~r~~Il~~~~~~~~---------------------------------~~~~~~~~~la~~~~g~~~----- 230 (611)
++++.|+.+++..|++.++.... .+...+++++++.++|...
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~~~~~ 1492 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTG 1492 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHHHHTS
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhcCchh
Confidence 99999999999999987764321 1112335555555555321
Q ss_pred --ccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhccCCcccc-------cccccCCCcccccccchhHHHHH
Q 007255 231 --ADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSITR-------GVTVEIPKVTWEDIGGLRDLKKK 301 (611)
Q Consensus 231 --~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~~~~~-------~~~~~~~~~~~~~i~g~~~~k~~ 301 (611)
.+...+++.+.+++.+-+.+.-..........+-+........+.... ..-.+.-...++++. .+.+++.
T Consensus 1493 ~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~~~~Y~~v~-~~~l~~~ 1571 (2695)
T 4akg_A 1493 PRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVN-KTDLVNF 1571 (2695)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEESSSSSSCEECC-HHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeeecCCCcceecC-HHHHHHH
Confidence 234566666777777766665443333333333333332222111100 000011112355553 3555655
Q ss_pred HHHHhhc---------------cCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcccccc
Q 007255 302 LQQAVEW---------------PIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVG 366 (611)
Q Consensus 302 l~~~~~~---------------~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g 366 (611)
+.+.+.. ++.|..++.|.-..|..++||+|++||||+++++..|...+..++.+..+.-++ ..
T Consensus 1572 l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y~--~~ 1649 (2695)
T 4akg_A 1572 IEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSN--LS 1649 (2695)
T ss_dssp HHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTCC--HH
T ss_pred HHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCCC--HH
Confidence 5555432 233445555555677789999999999999999999999999999998765433 34
Q ss_pred chHHHHHHHHHHHHh-cCCcEEEEcccc
Q 007255 367 ESEALLRNTFQRARL-AAPSIIFFDEAD 393 (611)
Q Consensus 367 ~~~~~~~~~~~~a~~-~~p~il~iDeid 393 (611)
+....++.++..|.. ..|.+++++|.+
T Consensus 1650 ~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1677 (2695)
T 4akg_A 1650 DFDMILKKAISDCSLKESRTCLIIDESN 1677 (2695)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEEETTT
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEeccc
Confidence 556778999988854 557677777664
No 66
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.81 E-value=1.5e-18 Score=178.80 Aligned_cols=218 Identities=18% Similarity=0.188 Sum_probs=165.1
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
.+.+.+|++++|++.+++.+...+..... ...++.++||+||||||||++|+++|..++.+++.++++.+..
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~ 93 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK 93 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc
Confidence 34556899999999999999988764211 1244568999999999999999999999999999999876532
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCC----------------
Q 007255 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ---------------- 426 (611)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------------- 426 (611)
...+...+.. ...+++|||||+|.+. ......|+..|+...-
T Consensus 94 ------~~~~~~~~~~--~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 94 ------SGDLAAILTN--LSEGDILFIDEIHRLS--------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp ------HHHHHHHHHT--CCTTCEEEEETGGGCC--------------HHHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred ------hhHHHHHHHh--ccCCCEEEEechhhcC--------------HHHHHHHHHHHHhccchhhcccCccccceecC
Confidence 2223333322 3467899999999873 3456777777764320
Q ss_pred CCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHH
Q 007255 427 AKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCR 505 (611)
Q Consensus 427 ~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~ 505 (611)
..++++|++||.+..+++++++ ||+..+.++.|+.+++..+++......... ++..++.++..+.| +.+++.+++.
T Consensus 152 ~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~ 228 (338)
T 3pfi_A 152 LPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLK 228 (338)
T ss_dssp CCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHH
T ss_pred CCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHH
Confidence 1148999999999999999999 999999999999999999999887765543 34457788887777 6889999998
Q ss_pred HHHHHHHHhhcccccccHHHHHHHHhhcCC
Q 007255 506 EAGIVALREDISATAVRNRHFQTVKDSLKP 535 (611)
Q Consensus 506 ~a~~~a~~~~~~~~~i~~~~~~~~l~~~~~ 535 (611)
.+...+.... ...++..++..++.....
T Consensus 229 ~~~~~a~~~~--~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 229 RVRDFADVND--EEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHHHHHHTT--CSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHhhc--CCccCHHHHHHHHHHhCC
Confidence 8876665432 346888888888876543
No 67
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.80 E-value=2.3e-19 Score=182.38 Aligned_cols=240 Identities=19% Similarity=0.232 Sum_probs=164.2
Q ss_pred ccccchhHHHHHHHHHhhccCCChhHHhhc-CCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc-ccccc
Q 007255 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRL-GISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MYVGE 367 (611)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~-~~~g~ 367 (611)
++++|++.+++.+...+..+.......... +...++++||+||||||||++|+++|..++.+++.++++++.. .|.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 358899999999988776432211100000 1134678999999999999999999999999999999998876 56654
Q ss_pred h-HHHHHHHHHHH-----HhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--------CCCCeEEE
Q 007255 368 S-EALLRNTFQRA-----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--------QAKGILVL 433 (611)
Q Consensus 368 ~-~~~~~~~~~~a-----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~vI 433 (611)
. ...++.++..+ ....++||||||+|.+....... ........+.+.|+..|++.. ...+++||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~--~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS--GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC--SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc--ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 3 34566665532 11236799999999997654321 111222345788888888531 34578888
Q ss_pred Ee----cCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHH-----------h--cCCCC-CCcccHHHHHHhCC--
Q 007255 434 AA----TNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVH-----------T--RNMKV-GDDVDLRSIAEETE-- 493 (611)
Q Consensus 434 ~~----tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~-----------~--~~~~~-~~~~~~~~la~~~~-- 493 (611)
++ ++.+..+++++++ ||+..+.|++|+.+++.+|++.. + .+..+ .++..++.+++.+.
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 250 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV 250 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhh
Confidence 88 5678899999998 99988999999999999999831 1 11111 23445677777662
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHhhcc----cccccHHHHHHHHhhc
Q 007255 494 -----LFTGAELEGLCREAGIVALREDIS----ATAVRNRHFQTVKDSL 533 (611)
Q Consensus 494 -----g~s~~~i~~~~~~a~~~a~~~~~~----~~~i~~~~~~~~l~~~ 533 (611)
+.+.+++.+++..+...+..+... ...|+.+++..++...
T Consensus 251 ~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 251 NEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred cccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 347889999998876554433221 1137888888877644
No 68
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.80 E-value=1.1e-20 Score=197.60 Aligned_cols=169 Identities=20% Similarity=0.202 Sum_probs=82.3
Q ss_pred ccccchhHHHHHHHHHhhccCCChhHHhhcCC-CCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc-ccccc
Q 007255 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGI-SPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MYVGE 367 (611)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~-~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~-~~~g~ 367 (611)
++|+|++++|+.+..++..+..+...+..+.. .+++++||+||||||||++|+++|..++.+++.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 46899999999999888765544443333332 25688999999999999999999999999999999999988 59995
Q ss_pred -hHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEe-cCCCcccchh
Q 007255 368 -SEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAA-TNRPHAIDAA 445 (611)
Q Consensus 368 -~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~-tn~~~~ld~a 445 (611)
.+..++.+|..+... +++||++.+.... .....++++++|+..||++.....+ +++ ||+|+.+|++
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 799999999998765 3589988764321 2234578999999999998766554 444 9999999999
Q ss_pred ccCCCCccceeecCCCCHH-HHHHHH
Q 007255 446 LMRPGRFDLVLYVPPPDLE-ARHEIL 470 (611)
Q Consensus 446 l~r~gRf~~~i~~~~p~~~-~r~~il 470 (611)
|+||||||+.|+++.|+.. .|.+|+
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhh
Confidence 9999999999999999998 788876
No 69
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.79 E-value=9.3e-20 Score=198.59 Aligned_cols=226 Identities=20% Similarity=0.282 Sum_probs=148.0
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc---
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS--- 362 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~--- 362 (611)
..-+++++|++++++.+.+.+...... ... ++.+++|+||||||||++|+++|..++.++..+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 344677999999999998766531111 111 4567999999999999999999999999999998876543
Q ss_pred ------ccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCC----------
Q 007255 363 ------MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ---------- 426 (611)
Q Consensus 363 ------~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------- 426 (611)
.|.|...+.+...|..+....| |+||||+|.+...+. ....+.|+..|+....
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------cCHHHHHHHHHhhhhcceeecccCCe
Confidence 5667777777777877766666 999999999865431 1245667777764321
Q ss_pred ---CCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHh-----cCCCCC------CcccHHHHHHhC
Q 007255 427 ---AKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHT-----RNMKVG------DDVDLRSIAEET 492 (611)
Q Consensus 427 ---~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~-----~~~~~~------~~~~~~~la~~~ 492 (611)
..+++||+|||.++.++++|++ ||+ +|.|+.|+.+++..|++.++ +..... ++..+..++...
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred eecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 1568999999999999999999 996 79999999999999999765 222221 233355655533
Q ss_pred CC-CCHHHH----HHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Q 007255 493 EL-FTGAEL----EGLCREAGIVALREDISATAVRNRHFQTVKDS 532 (611)
Q Consensus 493 ~g-~s~~~i----~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~ 532 (611)
.+ ...+++ +.+|+.+...+.........|+..++..++..
T Consensus 296 ~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 296 TREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred ChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 32 233444 44555544444443333446788888887743
No 70
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.78 E-value=2.9e-18 Score=170.96 Aligned_cols=224 Identities=18% Similarity=0.184 Sum_probs=148.5
Q ss_pred ccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc-cccccch
Q 007255 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY-SMYVGES 368 (611)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~-~~~~g~~ 368 (611)
..++|.....+.+...... ....+...+..+++++||+||||||||++|+++|+.++.+++.+++++.. +...+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 3456665554444432110 01122223456778999999999999999999999999999999876532 2112223
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-CCCCeEEEEecCCCcccch-hc
Q 007255 369 EALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-QAKGILVLAATNRPHAIDA-AL 446 (611)
Q Consensus 369 ~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vI~~tn~~~~ld~-al 446 (611)
...++.+|..+....+++|||||+|.+++.+... ......+++.|...+++.. ...++++|+|||.++.+++ .+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l 185 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM 185 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhh
Confidence 4577888988887788999999999998765322 1234667788888887654 3456889999999999988 55
Q ss_pred cCCCCccceeecCCCCH-HHHHHHHHHHhcCCCCCCcccHHHHHHhCCCC----CHHHHHHHHHHHHHHHHHhhcccccc
Q 007255 447 MRPGRFDLVLYVPPPDL-EARHEILRVHTRNMKVGDDVDLRSIAEETELF----TGAELEGLCREAGIVALREDISATAV 521 (611)
Q Consensus 447 ~r~gRf~~~i~~~~p~~-~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~----s~~~i~~~~~~a~~~a~~~~~~~~~i 521 (611)
.+ ||+..+.+|.++. ++...++.. ... .++.++..+++.+.|| +.+++.+++..+...+ ...
T Consensus 186 ~~--rf~~~i~~p~l~~r~~i~~i~~~---~~~-~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-------~~~ 252 (272)
T 1d2n_A 186 LN--AFSTTIHVPNIATGEQLLEALEL---LGN-FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-------PEY 252 (272)
T ss_dssp TT--TSSEEEECCCEEEHHHHHHHHHH---HTC-SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-------GGG
T ss_pred hc--ccceEEcCCCccHHHHHHHHHHh---cCC-CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-------hHH
Confidence 55 9998998876655 444444432 222 2456688899988887 5666666666543322 223
Q ss_pred cHHHHHHHHhhc
Q 007255 522 RNRHFQTVKDSL 533 (611)
Q Consensus 522 ~~~~~~~~l~~~ 533 (611)
...++...+...
T Consensus 253 ~~~~~~~~l~~~ 264 (272)
T 1d2n_A 253 RVRKFLALLREE 264 (272)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 445555555443
No 71
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.77 E-value=1.1e-17 Score=171.24 Aligned_cols=234 Identities=22% Similarity=0.246 Sum_probs=165.5
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccc
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~ 363 (611)
+.+.+|++++|.+..++.+.+.+.... . ...++.++||+||||||||++|+++++.++.+++.++++.+..
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAK-------A-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHH-------H-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHH-------c-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 345579999999999999888776311 0 1134568999999999999999999999999999988876532
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC----------------CC
Q 007255 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE----------------QA 427 (611)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~~ 427 (611)
...+...+.. ....+++|||||+|.+. ......|+..++... ..
T Consensus 77 -----~~~l~~~l~~-~~~~~~~l~lDEi~~l~--------------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 77 -----PGDLAAILAN-SLEEGDILFIDEIHRLS--------------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp -----HHHHHHHHTT-TCCTTCEEEETTTTSCC--------------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred -----hHHHHHHHHH-hccCCCEEEEECCcccc--------------cchHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 1222222221 01457799999999873 234455666665321 11
Q ss_pred CCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHH
Q 007255 428 KGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCRE 506 (611)
Q Consensus 428 ~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~ 506 (611)
.++.+|++||.+..+++++.+ ||+.++.++.|+.+++..+++..+...... ++..+..++..+.| +++++.+++..
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~ 213 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRR 213 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 357899999999999999998 998899999999999999999887765543 34457889999887 67888888887
Q ss_pred HHHHHHHhhcccccccHHHHHHHHhhcCC---CCCHHHHHHHHHHhhc
Q 007255 507 AGIVALREDISATAVRNRHFQTVKDSLKP---ALTKEEIDSYSSFMKS 551 (611)
Q Consensus 507 a~~~a~~~~~~~~~i~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~ 551 (611)
+...+... ....++.+++..++..... .....+.+.+....+.
T Consensus 214 ~~~~a~~~--~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~ 259 (324)
T 1hqc_A 214 VRDFAQVA--GEEVITRERALEALAALGLDELGLEKRDREILEVLILR 259 (324)
T ss_dssp HTTTSTTT--SCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHH
Confidence 76554322 2346888888887765542 2344444444444433
No 72
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.77 E-value=1.1e-18 Score=181.59 Aligned_cols=224 Identities=24% Similarity=0.247 Sum_probs=153.4
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHh--hcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccc-cccc
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAFS--RLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM-YVGE 367 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~--~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~-~~g~ 367 (611)
.|+|++.+++.+...+........... .-...++.++||+||||||||++|+++|..++.+|+.++++++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 368999999999888753221111000 0011256789999999999999999999999999999999998754 7776
Q ss_pred h-HHHHHHHHHHH----HhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-----------------
Q 007255 368 S-EALLRNTFQRA----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE----------------- 425 (611)
Q Consensus 368 ~-~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------- 425 (611)
. ...+..+|..+ ....++||||||+|.+...+...+........++++.|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 45667777665 4456789999999999877654443333334568999999998431
Q ss_pred --CCCCeEEEEecCCC----------------------------------------cc-----cchhccCCCCccceeec
Q 007255 426 --QAKGILVLAATNRP----------------------------------------HA-----IDAALMRPGRFDLVLYV 458 (611)
Q Consensus 426 --~~~~~~vI~~tn~~----------------------------------------~~-----ld~al~r~gRf~~~i~~ 458 (611)
...+++||+++|.. +. ++|+|+. ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 12234555555532 11 5677777 99999999
Q ss_pred CCCCHHHHHHHHHH----Hh-------cCCCCC---CcccHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHhhc
Q 007255 459 PPPDLEARHEILRV----HT-------RNMKVG---DDVDLRSIAEE--TELFTGAELEGLCREAGIVALREDI 516 (611)
Q Consensus 459 ~~p~~~~r~~il~~----~~-------~~~~~~---~~~~~~~la~~--~~g~s~~~i~~~~~~a~~~a~~~~~ 516 (611)
++|+.+++.+|+.. .. ...... ++..++.|+.. ...+..+++++++..+...++.+..
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~ 327 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLP 327 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcc
Confidence 99999999999985 21 111111 23345667653 3455678899999988887776653
No 73
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.77 E-value=3.6e-17 Score=168.48 Aligned_cols=196 Identities=21% Similarity=0.273 Sum_probs=147.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~ 95 (611)
..+++++|++..++.+..++..... .-.++.++||+||||||||++++++++.++.+++.+++..+..
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~---- 93 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK---- 93 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc----
Confidence 5789999999999999998865321 1235578999999999999999999999999999999876531
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC------------CCCCCcE
Q 007255 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS------------KTSVPHV 163 (611)
Q Consensus 96 ~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~------------~~~~~~v 163 (611)
...+...+.. ...+++|||||+|.+.+ ..+..|+..++..... ....+++
T Consensus 94 --~~~~~~~~~~------~~~~~vl~lDEi~~l~~----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 94 --SGDLAAILTN------LSEGDILFIDEIHRLSP----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp --HHHHHHHHHT------CCTTCEEEEETGGGCCH----------HHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred --hhHHHHHHHh------ccCCCEEEEechhhcCH----------HHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 2223333322 23578999999998853 5677888888765321 1112258
Q ss_pred EEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHHH
Q 007255 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATM 242 (611)
Q Consensus 164 ~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~ 242 (611)
.+|++||....+++++++ ||+..+.+++|+.+++..+++.++...... .+..+..++..+.|. .+.+.+++..+..
T Consensus 156 ~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRST-PRIALRLLKRVRD 232 (338)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC-HHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 999999999999999998 998899999999999999999888766543 223467777766654 4667777776654
Q ss_pred HH
Q 007255 243 SA 244 (611)
Q Consensus 243 ~a 244 (611)
.+
T Consensus 233 ~a 234 (338)
T 3pfi_A 233 FA 234 (338)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 74
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.77 E-value=1.1e-17 Score=174.31 Aligned_cols=219 Identities=22% Similarity=0.277 Sum_probs=153.3
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEcccccccccc-
Q 007255 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA--HLTVISPHSVHKAHV- 94 (611)
Q Consensus 18 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~~~~~~~~~~- 94 (611)
+++++|++..++.+..+.... ..+..++.++||+||||||||++++++++.++. +++.+++..+...+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 114 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMS 114 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSC
T ss_pred hhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccc
Confidence 789999999999877665331 123445689999999999999999999999975 677777655332221
Q ss_pred ------------------------------------------------cchHHHHHHHHHHHHhhhh-cC----CCeEEE
Q 007255 95 ------------------------------------------------GESEKALREAFSQASSHAL-SG----KPSVVF 121 (611)
Q Consensus 95 ------------------------------------------------~~~~~~l~~~f~~~~~~~~-~~----~~~il~ 121 (611)
+.....++..+..+..... .+ .|+|||
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ 194 (368)
T 3uk6_A 115 KTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLF 194 (368)
T ss_dssp HHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEE
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEE
Confidence 1223344444444433211 11 267999
Q ss_pred EccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEee-----------cCcccccHHhhccCCcceEEE
Q 007255 122 IDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST-----------NRVDAIDPALRRSGRFDAEVE 190 (611)
Q Consensus 122 IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~tt-----------n~~~~l~~~l~~~~Rf~~~i~ 190 (611)
|||+|.+.+ ..++.|+..++... ..++++++. |.+..+++++++ ||. .+.
T Consensus 195 IDEi~~l~~----------~~~~~L~~~le~~~------~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~-~i~ 255 (368)
T 3uk6_A 195 IDEVHMLDI----------ESFSFLNRALESDM------APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL-IVS 255 (368)
T ss_dssp EESGGGSBH----------HHHHHHHHHTTCTT------CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE-EEE
T ss_pred EhhccccCh----------HHHHHHHHHhhCcC------CCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc-EEE
Confidence 999998853 56777888876532 235555554 346789999998 996 489
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHH
Q 007255 191 VTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHAR 269 (611)
Q Consensus 191 ~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~ 269 (611)
|++|+.+++.+|++..+...... .+..++.++..+.+.+.+.+.++++.|...+..+.. ..++.+++..+.
T Consensus 256 ~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~--------~~It~~~v~~a~ 327 (368)
T 3uk6_A 256 TTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKG--------TEVQVDDIKRVY 327 (368)
T ss_dssp ECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC--------SSBCHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC--------CCCCHHHHHHHH
Confidence 99999999999999888664433 233478888888866788999999998877755422 247777777776
Q ss_pred hc
Q 007255 270 SV 271 (611)
Q Consensus 270 ~~ 271 (611)
..
T Consensus 328 ~~ 329 (368)
T 3uk6_A 328 SL 329 (368)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 75
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.76 E-value=4.5e-18 Score=180.35 Aligned_cols=212 Identities=22% Similarity=0.275 Sum_probs=154.8
Q ss_pred cCCCcccccccchhHHH---HHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchh
Q 007255 283 EIPKVTWEDIGGLRDLK---KKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAE 359 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k---~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~ 359 (611)
...+.+|++++|++.+. +.|...+.. + ..+++||+||||||||++|+++|+.++.+++.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------G--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------T--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------C--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 34556899999999998 777777764 1 2257999999999999999999999999999988643
Q ss_pred hccccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEe
Q 007255 360 LYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAA 435 (611)
Q Consensus 360 ~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~ 435 (611)
. ....++.++..+.. ..+.||||||+|.+.. ...+.|+..++. +.+++|++
T Consensus 86 ~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~--------------~~q~~LL~~le~----~~v~lI~a 140 (447)
T 3pvs_A 86 S-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK--------------SQQDAFLPHIED----GTITFIGA 140 (447)
T ss_dssp C-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEE
T ss_pred C-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH--------------HHHHHHHHHHhc----CceEEEec
Confidence 2 23345555555543 4678999999998832 234567777763 55777777
Q ss_pred c--CCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCC-------C-CCcccHHHHHHhCCCCCHHHHHHHHH
Q 007255 436 T--NRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMK-------V-GDDVDLRSIAEETELFTGAELEGLCR 505 (611)
Q Consensus 436 t--n~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~-------~-~~~~~~~~la~~~~g~s~~~i~~~~~ 505 (611)
| |....+++++++ |+. ++.++.|+.+++..+++..+.... + .++..++.++..+.| +.+++.+++.
T Consensus 141 tt~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le 216 (447)
T 3pvs_A 141 TTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLE 216 (447)
T ss_dssp ESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHH
T ss_pred CCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 7 444579999999 887 788999999999999998776521 1 134457888888877 7888888888
Q ss_pred HHHHHHHHhhcccccccHHHHHHHHhhcCCC
Q 007255 506 EAGIVALREDISATAVRNRHFQTVKDSLKPA 536 (611)
Q Consensus 506 ~a~~~a~~~~~~~~~i~~~~~~~~l~~~~~~ 536 (611)
.+...+.........|+.+++..++......
T Consensus 217 ~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~ 247 (447)
T 3pvs_A 217 MMADMAEVDDSGKRVLKPELLTEIAGERSAR 247 (447)
T ss_dssp HHHHHSCBCTTSCEECCHHHHHHHHTCCCCC
T ss_pred HHHHhcccccCCCCccCHHHHHHHHhhhhhc
Confidence 8776653221123579999999998765443
No 76
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.76 E-value=8.7e-18 Score=178.55 Aligned_cols=221 Identities=18% Similarity=0.229 Sum_probs=154.7
Q ss_pred CCccccccc-ch--hHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-----CCcEEeec
Q 007255 285 PKVTWEDIG-GL--RDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLS 356 (611)
Q Consensus 285 ~~~~~~~i~-g~--~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~ 356 (611)
+..+|++++ |. ......+......+ + . +++++||||||||||++|+++|+++ +.+++.++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 455788876 53 33444444444421 1 2 5689999999999999999999998 88899999
Q ss_pred chhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEec
Q 007255 357 GAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAAT 436 (611)
Q Consensus 357 ~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t 436 (611)
+.++...+.+.........|.......++||||||+|.+.++ ......|+..++.+...+..+||++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~------------~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK------------TGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC------------HHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC------------hHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 888755443322211112233322226889999999998532 12334455554433345566777666
Q ss_pred CCCcc---cchhccCCCCcc--ceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007255 437 NRPHA---IDAALMRPGRFD--LVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIV 510 (611)
Q Consensus 437 n~~~~---ld~al~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~ 510 (611)
+.|.. +++++++ ||. ..+.+++|+.++|..|++..+....+. ++..+..++..+.| +.+++.+++..+...
T Consensus 236 ~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~ 312 (440)
T 2z4s_A 236 REPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_dssp SCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 66665 7889998 886 789999999999999999776543332 33447889999987 899999999999887
Q ss_pred HHHhhcccccccHHHHHHHHhhcCC
Q 007255 511 ALREDISATAVRNRHFQTVKDSLKP 535 (611)
Q Consensus 511 a~~~~~~~~~i~~~~~~~~l~~~~~ 535 (611)
+... ..+|+.+++..++....+
T Consensus 313 a~~~---~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 313 KETT---GKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HHHS---SSCCCHHHHHHHTSTTTC
T ss_pred HHHh---CCCCCHHHHHHHHHHHhh
Confidence 7644 356999999999987653
No 77
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.75 E-value=2.8e-17 Score=166.99 Aligned_cols=249 Identities=20% Similarity=0.250 Sum_probs=160.1
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc-ccccc
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKL-GLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK-AHVGE 96 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~-g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~-~~~~~ 96 (611)
+.++|++++++.|...+..++......... +...+.++||+||||||||++++++++.++.+++.++++.+.. .+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 458999999999998886643322211110 1135689999999999999999999999999999999988764 33332
Q ss_pred -hHHHHHHHHHHHHhhhh-cCCCeEEEEccccccCCCCCCC--chhhHHHHHHHHHHHhcCCCC----CCCCCcEEEEEe
Q 007255 97 -SEKALREAFSQASSHAL-SGKPSVVFIDEIDALCPRRDHR--REQDVRIASQLFTLMDSNKPS----KTSVPHVVVVAS 168 (611)
Q Consensus 97 -~~~~l~~~f~~~~~~~~-~~~~~il~IDeid~l~~~~~~~--~~~~~~~~~~ll~~l~~~~~~----~~~~~~v~ii~t 168 (611)
....+..++..+..... ...++||||||+|.+.+..... ......++..|+..++..... .....++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 23345555543210000 0126799999999998765322 122233577888888863110 001235778888
Q ss_pred e----cCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhh-----------cCCCC--C-CcccHHHHHHhcc----
Q 007255 169 T----NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYT-----------KKVPL--D-ANVDLEAIATSCN---- 226 (611)
Q Consensus 169 t----n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~-----------~~~~~--~-~~~~~~~la~~~~---- 226 (611)
+ +.+..+++++.+ ||...+.|++|+.+++.+|++... ..... . .+..++.++..+.
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 4 567789999998 999889999999999999998421 11111 1 2223666666552
Q ss_pred ---CCccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhc
Q 007255 227 ---GYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSV 271 (611)
Q Consensus 227 ---g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~ 271 (611)
+.+.+.+.++++.+...+...... .......++.+++..+...
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~~~~~~~~--~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDKISFSASD--MNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHHHHHHGGG--CTTCEEEECHHHHHHHTCS
T ss_pred cccccCcHHHHHHHHHHHHhhhcCCcc--ccCCEEEEeeHHHHHHHHh
Confidence 456788888888876554322211 1112234777777776554
No 78
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.74 E-value=1.9e-17 Score=188.85 Aligned_cols=223 Identities=20% Similarity=0.218 Sum_probs=161.5
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEee
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSL 355 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~~ 355 (611)
+..|++++|.+...+.+.+.+.. ..+.++||+||||||||++|+++|..+ ++.++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 45789999999988888887653 345689999999999999999999987 6778888
Q ss_pred cchhhc--cccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEE
Q 007255 356 SGAELY--SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVL 433 (611)
Q Consensus 356 ~~~~~~--~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI 433 (611)
+.+.+. .++.|..+..++.+++.+....++||||||+|.++++++...+ .....+. +..+-..+.+.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~-----~~~~~~~----L~~~l~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG-----QVDAANL----IKPLLSSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC-----HHHHHHH----HSSCSSSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc-----hHHHHHH----HHHHHhCCCeEEE
Confidence 888776 4688999999999999998878899999999999876432111 1222333 3333456788999
Q ss_pred EecCCCc-----ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCC----C-CCcccHHHHHHhCC-----CCCHH
Q 007255 434 AATNRPH-----AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMK----V-GDDVDLRSIAEETE-----LFTGA 498 (611)
Q Consensus 434 ~~tn~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~----~-~~~~~~~~la~~~~-----g~s~~ 498 (611)
++||.++ .+|+++.| ||+ .+.|+.|+.++|.+||+.....+. + ..+..+..++..+. .+.+.
T Consensus 320 ~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~ 396 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTH
T ss_pred EEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCch
Confidence 9999764 57899999 998 799999999999999997664422 1 12333555555443 35566
Q ss_pred HHHHHHHHHHHHHHHhh--cccccccHHHHHHHHhhc
Q 007255 499 ELEGLCREAGIVALRED--ISATAVRNRHFQTVKDSL 533 (611)
Q Consensus 499 ~i~~~~~~a~~~a~~~~--~~~~~i~~~~~~~~l~~~ 533 (611)
.+..++.+|...+.... .....++.+++..++...
T Consensus 397 ~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 77788887765544321 123457777777777654
No 79
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.74 E-value=1.7e-17 Score=169.94 Aligned_cols=203 Identities=17% Similarity=0.140 Sum_probs=141.5
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~ 361 (611)
..+.+.+|++++|++.+++.+.+++.. ...++.+|++||||||||++|+++|++++.+++.+++++..
T Consensus 18 ~k~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~ 85 (324)
T 3u61_B 18 QKYRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK 85 (324)
T ss_dssp HHSCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC
T ss_pred HhhCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC
Confidence 345567899999999999999998872 24456788899999999999999999999999999987632
Q ss_pred cccccchHHHHHHHHHHHHhc-----CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEec
Q 007255 362 SMYVGESEALLRNTFQRARLA-----APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAAT 436 (611)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~-----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t 436 (611)
...++..+...... .+.|+||||+|.+.+ ....+.|+..++. ...++.+|++|
T Consensus 86 -------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------------~~~~~~L~~~le~--~~~~~~iI~~~ 143 (324)
T 3u61_B 86 -------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------------AESQRHLRSFMEA--YSSNCSIIITA 143 (324)
T ss_dssp -------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------------HHHHHHHHHHHHH--HGGGCEEEEEE
T ss_pred -------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------------HHHHHHHHHHHHh--CCCCcEEEEEe
Confidence 33444444443332 467999999998831 3456777777773 44678889999
Q ss_pred CCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHh-------cCCCCC-Cc-ccHHHHHHhCCCCCHHHHHHHHHHH
Q 007255 437 NRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHT-------RNMKVG-DD-VDLRSIAEETELFTGAELEGLCREA 507 (611)
Q Consensus 437 n~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~-------~~~~~~-~~-~~~~~la~~~~g~s~~~i~~~~~~a 507 (611)
|.+..+++++.+ ||. .+.|+.|+.++|..|++... ....+. ++ ..++.+++.+.| +.+++.+.++.+
T Consensus 144 n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~ 219 (324)
T 3u61_B 144 NNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSY 219 (324)
T ss_dssp SSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHH
T ss_pred CCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 999999999999 996 79999999999877665332 211222 23 557888888776 344455555544
Q ss_pred HHHHHHhhcccccccHHHHHHHH
Q 007255 508 GIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 508 ~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
. ....|+.+++..++
T Consensus 220 ~--------~~~~i~~~~v~~~~ 234 (324)
T 3u61_B 220 S--------SKGVLDAGILSLVT 234 (324)
T ss_dssp G--------GGTCBCC-------
T ss_pred h--------ccCCCCHHHHHHHh
Confidence 3 12346665555544
No 80
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.74 E-value=9.4e-17 Score=154.38 Aligned_cols=202 Identities=20% Similarity=0.211 Sum_probs=146.8
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-----CCcEEeecch
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGA 358 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~~~ 358 (611)
.++..|++++|.+...+.+.+.+.. ....+++|+||||||||++|+++++.+ ...++.++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 4566789999999999999988763 122359999999999999999999986 3456777665
Q ss_pred hhccccccchHHHHHHHHHHHH------hcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEE
Q 007255 359 ELYSMYVGESEALLRNTFQRAR------LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILV 432 (611)
Q Consensus 359 ~~~~~~~g~~~~~~~~~~~~a~------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 432 (611)
+... ...+...+.... ...+.+|+|||+|.+. ....+.|+..++. ...++.+
T Consensus 78 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------------~~~~~~l~~~l~~--~~~~~~~ 135 (226)
T 2chg_A 78 DERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT--------------ADAQAALRRTMEM--YSKSCRF 135 (226)
T ss_dssp CTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC--------------HHHHHHHHHHHHH--TTTTEEE
T ss_pred cccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcC--------------HHHHHHHHHHHHh--cCCCCeE
Confidence 4322 112222222222 2457899999999873 2335666667763 4567888
Q ss_pred EEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007255 433 LAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVA 511 (611)
Q Consensus 433 I~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a 511 (611)
|++||.++.+++++.+ ||. .+.+++|+.+++.++++..+...... ++..+..+++.+.| +.+.+.+++..+...+
T Consensus 136 i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 136 ILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG 211 (226)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC
T ss_pred EEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 8999999999999998 898 89999999999999999776543332 34457788888877 6777777777665443
Q ss_pred HHhhcccccccHHHHHHHHh
Q 007255 512 LREDISATAVRNRHFQTVKD 531 (611)
Q Consensus 512 ~~~~~~~~~i~~~~~~~~l~ 531 (611)
..|+.+++..++.
T Consensus 212 -------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -------EVVDADTIYQITA 224 (226)
T ss_dssp -------SCBCHHHHHHHHH
T ss_pred -------ceecHHHHHHHhc
Confidence 4688888888764
No 81
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.74 E-value=3.8e-18 Score=182.92 Aligned_cols=205 Identities=21% Similarity=0.271 Sum_probs=140.7
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEe
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFS 354 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~ 354 (611)
.+..+++++|.+...+.+.+.+.. ...+++||+||||||||++|+++|..+ +.+++.
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 445788999999999998888763 334679999999999999999999997 788999
Q ss_pred ecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEE
Q 007255 355 LSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLA 434 (611)
Q Consensus 355 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~ 434 (611)
++++ .+|.|+.+..++.+|..+....|.||||| +. ....+.|+..| ..+.+.+|+
T Consensus 242 l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~------------~~a~~~L~~~L----~~g~v~vI~ 296 (468)
T 3pxg_A 242 LDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AA------------IDASNILKPSL----ARGELQCIG 296 (468)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC------C--------------------CCCT----TSSSCEEEE
T ss_pred eeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cc------------hhHHHHHHHhh----cCCCEEEEe
Confidence 9887 67888888889999999998889999999 10 12334444444 356799999
Q ss_pred ecCCCc-----ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-----CcccHHHHHHhCCC-----CCHHH
Q 007255 435 ATNRPH-----AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-----DDVDLRSIAEETEL-----FTGAE 499 (611)
Q Consensus 435 ~tn~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~la~~~~g-----~s~~~ 499 (611)
+||.++ .+|+++.| ||+ .|.|+.|+.+++..|++.+...+... .+..+..++..+.+ +.+..
T Consensus 297 at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ 373 (468)
T 3pxg_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDK 373 (468)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHH
T ss_pred cCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcH
Confidence 999987 68999999 998 69999999999999999887664332 22335555555443 33456
Q ss_pred HHHHHHHHHHHHHHhhcccccccHHHHHHHHh
Q 007255 500 LEGLCREAGIVALREDISATAVRNRHFQTVKD 531 (611)
Q Consensus 500 i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~ 531 (611)
+..++.+|...+..+. ...|-...++...+.
T Consensus 374 ai~ll~~a~~~~~~~~-~~~p~~i~~l~~~i~ 404 (468)
T 3pxg_A 374 AIDLIDEAGSKVRLRS-FTTPPNLKELEQKLD 404 (468)
T ss_dssp HHHHHHHHHHHHHHHT-TSCCSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-CCCchHHHHHHHHHH
Confidence 7777777765554432 223333344444443
No 82
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.73 E-value=3.5e-17 Score=167.48 Aligned_cols=197 Identities=20% Similarity=0.273 Sum_probs=137.6
Q ss_pred CCccccccc-c--hhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecch
Q 007255 285 PKVTWEDIG-G--LRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGA 358 (611)
Q Consensus 285 ~~~~~~~i~-g--~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~ 358 (611)
+..+|++++ | .......+...+..+ ...+++++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 456788876 4 344455555555531 1245689999999999999999999998 8999999998
Q ss_pred hhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 007255 359 ELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNR 438 (611)
Q Consensus 359 ~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 438 (611)
++...+.+.........|.... ..+++|||||+|.+.++ ......++..++.....+..+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~------------~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGK------------ERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTC------------HHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCC------------hHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 8866554433222222232222 34789999999998532 1223344444443334556777777777
Q ss_pred Cc---ccchhccCCCCcc--ceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007255 439 PH---AIDAALMRPGRFD--LVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIV 510 (611)
Q Consensus 439 ~~---~ld~al~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~ 510 (611)
|. .+++++.+ ||. ..+.+++ +.+++..|++..+...+.. ++..++.++..+ | +.+++.+++..+...
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 77 57899998 886 6799999 9999999999887654443 344578899998 6 788888888877655
No 83
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.73 E-value=6.7e-17 Score=161.08 Aligned_cols=194 Identities=19% Similarity=0.239 Sum_probs=133.2
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccc-cccch
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA-HVGES 97 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~-~~~~~ 97 (611)
..++|.....+.+....... .......+..++.++||+||||||||++|+++|+.++.+++.+++.+.... ..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 56888888877776632111 122233345677899999999999999999999999999999987652211 11122
Q ss_pred HHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccH
Q 007255 98 EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDP 177 (611)
Q Consensus 98 ~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~ 177 (611)
...++.+|..+.. ..+++|||||+|.++............++..|...++.... ...++++|+|||.++.+++
T Consensus 110 ~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~---~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 110 CQAMKKIFDDAYK----SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP---QGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp HHHHHHHHHHHHT----SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCS---TTCEEEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHh----cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccC---CCCCEEEEEecCChhhcch
Confidence 2455666766542 34789999999999765543334455677777777765332 2336889999999988887
Q ss_pred -HhhccCCcceEEEccCCCH-HHHHHHHHHhhcCCCCCCcccHHHHHHhccCC
Q 007255 178 -ALRRSGRFDAEVEVTVPTA-EERFEILKLYTKKVPLDANVDLEAIATSCNGY 228 (611)
Q Consensus 178 -~l~~~~Rf~~~i~~~~p~~-~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~ 228 (611)
.+.+ ||...+.+|+++. ++...++... ..+ .+..+..++..+.|+
T Consensus 183 ~~l~~--rf~~~i~~p~l~~r~~i~~i~~~~---~~~-~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 183 MEMLN--AFSTTIHVPNIATGEQLLEALELL---GNF-KDKERTTIAQQVKGK 229 (272)
T ss_dssp TTCTT--TSSEEEECCCEEEHHHHHHHHHHH---TCS-CHHHHHHHHHHHTTS
T ss_pred hhhhc--ccceEEcCCCccHHHHHHHHHHhc---CCC-CHHHHHHHHHHhcCC
Confidence 5665 9988899987766 5555555542 222 344688899998887
No 84
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.73 E-value=1.8e-17 Score=172.31 Aligned_cols=243 Identities=18% Similarity=0.259 Sum_probs=156.6
Q ss_pred ccCCcHHHHHHHHHHHHhhhhCchHHHh-cCC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccc-cccc
Q 007255 20 AIGGNRAAVEALRELITFPLLYSSQAQK-LGL-KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA-HVGE 96 (611)
Q Consensus 20 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~-~g~-~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~-~~~~ 96 (611)
.|+|++.+++.+...+...+........ .+. .++.++||+||||||||++|+++|+.++.+++.++++.+... +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3699999999999988654322111000 011 256899999999999999999999999999999999887643 4554
Q ss_pred h-HHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCc----hhhHHHHHHHHHHHhcCCC-------C--------
Q 007255 97 S-EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR----EQDVRIASQLFTLMDSNKP-------S-------- 156 (611)
Q Consensus 97 ~-~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~-------~-------- 156 (611)
. ...+..+|..+........++||||||+|.+.+.++... .....++..|+..|++... .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 3 345566665542211122378999999999987654321 1223488999999993210 0
Q ss_pred CCCCCcEEEEEeecCc----------cc-----------------------------------ccHHhhccCCcceEEEc
Q 007255 157 KTSVPHVVVVASTNRV----------DA-----------------------------------IDPALRRSGRFDAEVEV 191 (611)
Q Consensus 157 ~~~~~~v~ii~ttn~~----------~~-----------------------------------l~~~l~~~~Rf~~~i~~ 191 (611)
.....++++|++++.. .. +.|+|.+ ||+..+.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 0112345666666642 11 6788887 99999999
Q ss_pred cCCCHHHHHHHHHH----hhc-------CCCCC---CcccHHHHHHh--ccCCccccHHHHHHHHHHHHhhhcccccccc
Q 007255 192 TVPTAEERFEILKL----YTK-------KVPLD---ANVDLEAIATS--CNGYVGADLEALCREATMSAVKRSSDANECA 255 (611)
Q Consensus 192 ~~p~~~~r~~Il~~----~~~-------~~~~~---~~~~~~~la~~--~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~ 255 (611)
++|+.+++.+|+.. +.. ..... .+.-++.++.. ...+..+.|++++..++...+.+..... ..
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~-~~ 332 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSME-DV 332 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCC-CS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhccccc-CC
Confidence 99999999999985 221 11211 12225666653 2345579999999999988877654321 11
Q ss_pred cccchhHHHH
Q 007255 256 GVLSVTMEDW 265 (611)
Q Consensus 256 ~~~~v~~ed~ 265 (611)
....++.+++
T Consensus 333 ~~~~I~~~~v 342 (363)
T 3hws_A 333 EKVVIDESVI 342 (363)
T ss_dssp EEEECHHHHT
T ss_pred ceeEEcHHHH
Confidence 2334555443
No 85
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.72 E-value=1.4e-17 Score=191.76 Aligned_cols=203 Identities=23% Similarity=0.247 Sum_probs=138.6
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEee
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSL 355 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~~ 355 (611)
+..+++++|.+...+.+.+.+.. ..+++++|+||||||||++|+++|..+ +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 45788999999888888887653 345689999999999999999999998 8899999
Q ss_pred cchhhc--cccccchHHHHHHHHHHHHhc-CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEE
Q 007255 356 SGAELY--SMYVGESEALLRNTFQRARLA-APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILV 432 (611)
Q Consensus 356 ~~~~~~--~~~~g~~~~~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 432 (611)
+++.+. .+|.|+.+..++.++..+... .|+||||||+|.+.+.+...+ ...+.+.|...++ .+.+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g------~~~~~~~L~~~l~----~~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG------AVDAGNMLKPALA----RGELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHH----TTCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc------hHHHHHHHHHHHh----CCCeEE
Confidence 999887 578899999999999998875 688999999999986643211 1223344444443 457889
Q ss_pred EEecCCCc----ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-----CcccHHHHHHhC-----CCCCHH
Q 007255 433 LAATNRPH----AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-----DDVDLRSIAEET-----ELFTGA 498 (611)
Q Consensus 433 I~~tn~~~----~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~la~~~-----~g~s~~ 498 (611)
|++||.++ .+|+++.| ||+. +.++.|+.+++.+|++..+..+... .+..+..++..+ +.|.+.
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChH
Confidence 99999875 47999999 9994 9999999999999998766543211 233345555543 456678
Q ss_pred HHHHHHHHHHHHHHHh
Q 007255 499 ELEGLCREAGIVALRE 514 (611)
Q Consensus 499 ~i~~~~~~a~~~a~~~ 514 (611)
....++.+|+..+..+
T Consensus 380 kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 380 KAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888888887766544
No 86
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.71 E-value=1.7e-15 Score=188.13 Aligned_cols=329 Identities=19% Similarity=0.209 Sum_probs=187.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEcccccccccccchHHHHHHHHHHHHh-----------hhh-cCCCe
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC-GAHLTVISPHSVHKAHVGESEKALREAFSQASS-----------HAL-SGKPS 118 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l-~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~-----------~~~-~~~~~ 118 (611)
...++||+||||||||++++..+..+ +..++.++.+.-.+ ...+...++.... .+. .++..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 45799999999999998887665554 55667777654322 2334444432110 111 24557
Q ss_pred EEEEccccccCCCCCCCchhhHHHHHHHHHHH---hcCCCCCCCCCcEEEEEeecCc-----ccccHHhhccCCcceEEE
Q 007255 119 VVFIDEIDALCPRRDHRREQDVRIASQLFTLM---DSNKPSKTSVPHVVVVASTNRV-----DAIDPALRRSGRFDAEVE 190 (611)
Q Consensus 119 il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l---~~~~~~~~~~~~v~ii~ttn~~-----~~l~~~l~~~~Rf~~~i~ 190 (611)
|+||||+|. +....++.....+++.+++..- +..........++.+|+|+|++ ..+++++.| ||. .++
T Consensus 1377 VlFiDDiNm-p~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-vi~ 1452 (3245)
T 3vkg_A 1377 VVFCDEINL-PSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-ILL 1452 (3245)
T ss_dssp EEEETTTTC-CCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-EEE
T ss_pred EEEecccCC-CCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-EEE
Confidence 999999974 3333344444444444444321 1111112223568899999997 378999998 996 699
Q ss_pred ccCCCHHHHHHHHHHhhcCCC-C--------------------------------CCcccHHHHHHhccCCcc-------
Q 007255 191 VTVPTAEERFEILKLYTKKVP-L--------------------------------DANVDLEAIATSCNGYVG------- 230 (611)
Q Consensus 191 ~~~p~~~~r~~Il~~~~~~~~-~--------------------------------~~~~~~~~la~~~~g~~~------- 230 (611)
++.|+.++...|+..++.... . +...+++++++.+.|...
T Consensus 1453 i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~~~~~~~ 1532 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEAIQTMDG 1532 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHHHHTSSC
T ss_pred eCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHhcCcccc
Confidence 999999999999876543211 0 111234444444433211
Q ss_pred ccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhccCCccccc------ccccCCCcccccccchhHHHHHHHH
Q 007255 231 ADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSITRG------VTVEIPKVTWEDIGGLRDLKKKLQQ 304 (611)
Q Consensus 231 ~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~~~~~~------~~~~~~~~~~~~i~g~~~~k~~l~~ 304 (611)
.+...+++.+.+++.+-+.|.-..........+.+........+..... .-.+.-...+.++ ..+++++.+.+
T Consensus 1533 ~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf~~f~~~~Y~~v-~~~~l~~~l~~ 1611 (3245)
T 3vkg_A 1533 CTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWLTKDYQPV-NRSDLREYVKA 1611 (3245)
T ss_dssp CCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCCCSSCC----CC-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcchhhhcccCcchhhhccccCccC-CHHHHHHHHHH
Confidence 1234455556666666666544433333333333333332222211100 0000001123333 34555555555
Q ss_pred Hhhc---------------cCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccccccchH
Q 007255 305 AVEW---------------PIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESE 369 (611)
Q Consensus 305 ~~~~---------------~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g~~~ 369 (611)
.+.. .+.|..+..|.-..|..++||+|..|+||+++++..|...+..++.+..+.-++ ..+..
T Consensus 1612 ~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~Y~--~~~f~ 1689 (3245)
T 3vkg_A 1612 RLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYK--SSDFD 1689 (3245)
T ss_dssp HHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC----CC--HHHHH
T ss_pred HHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCCCC--HHHHH
Confidence 4432 122333444444567789999999999999999999999999999988765433 34556
Q ss_pred HHHHHHHHHHHh-cCCcEEEEcccc
Q 007255 370 ALLRNTFQRARL-AAPSIIFFDEAD 393 (611)
Q Consensus 370 ~~~~~~~~~a~~-~~p~il~iDeid 393 (611)
.-++.++..|.. ..|.+++|+|.+
T Consensus 1690 eDLk~l~~~aG~~~~~~vFL~tD~q 1714 (3245)
T 3vkg_A 1690 DDLRMLLKRAGCKEEKICFIFDESN 1714 (3245)
T ss_dssp HHHHHHHHHHHTSCCCEEEEEEGGG
T ss_pred HHHHHHHHHHhcCCCCEEEEEeccc
Confidence 778899988854 567777777654
No 87
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.71 E-value=8.9e-17 Score=167.97 Aligned_cols=238 Identities=21% Similarity=0.200 Sum_probs=147.6
Q ss_pred cccchhHHHHHHHHHhhccCCChhHH-----------------hhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEE
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAF-----------------SRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF 353 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~ 353 (611)
.|+|++.+++.+...+..+....... ..-...++.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 47899999999998774322221110 0011235678999999999999999999999999999
Q ss_pred eecchhhc-cccccch-HHHHHHHHHHH----HhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--
Q 007255 354 SLSGAELY-SMYVGES-EALLRNTFQRA----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-- 425 (611)
Q Consensus 354 ~~~~~~~~-~~~~g~~-~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-- 425 (611)
.+++..+. ..|.|.. +..+...+..+ ....++||||||+|.+...++............+++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3455543 34455555432 2346789999999999776443222222223458899999998531
Q ss_pred -----------------CCCCeEEEEecCCC-----------------------------------------cccchhcc
Q 007255 426 -----------------QAKGILVLAATNRP-----------------------------------------HAIDAALM 447 (611)
Q Consensus 426 -----------------~~~~~~vI~~tn~~-----------------------------------------~~ld~al~ 447 (611)
...++++|++||.. ..+.|+++
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 12456788887721 12345666
Q ss_pred CCCCccceeecCCCCHHHHHHHHHH----H-------h--cCCCC-CCcccHHHHHHhCC--CCCHHHHHHHHHHHHHHH
Q 007255 448 RPGRFDLVLYVPPPDLEARHEILRV----H-------T--RNMKV-GDDVDLRSIAEETE--LFTGAELEGLCREAGIVA 511 (611)
Q Consensus 448 r~gRf~~~i~~~~p~~~~r~~il~~----~-------~--~~~~~-~~~~~~~~la~~~~--g~s~~~i~~~~~~a~~~a 511 (611)
+ ||+.++.|++++.++...|+.. + + .+..+ .++..+..|+.... ....+++.+++..+...+
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 5 8988999999999999999862 1 1 11111 13334667776643 246789999999888877
Q ss_pred HHhhcc----cccccHHHHHHHH
Q 007255 512 LREDIS----ATAVRNRHFQTVK 530 (611)
Q Consensus 512 ~~~~~~----~~~i~~~~~~~~l 530 (611)
+.+... ...|+.+++..+.
T Consensus 340 ~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 340 MFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHTGGGGTTSEEEECHHHHTTSS
T ss_pred HhhccCCCCCEEEEeHHHhcCCC
Confidence 665432 2246777666544
No 88
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.70 E-value=4.3e-16 Score=163.22 Aligned_cols=223 Identities=17% Similarity=0.161 Sum_probs=156.6
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---------CCcEEeecch
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---------EASFFSLSGA 358 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---------~~~~~~~~~~ 358 (611)
..++++|.+...+.+...+...+. ...+++++|+||||||||++|+++++.+ +..++.+++.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 447899999999999887754221 1445689999999999999999999988 7888889876
Q ss_pred hhccc----------------cccc-hHHHHHHHHHHHHhc-CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHH
Q 007255 359 ELYSM----------------YVGE-SEALLRNTFQRARLA-APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTE 420 (611)
Q Consensus 359 ~~~~~----------------~~g~-~~~~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ 420 (611)
..... ..|. .......++...... .|.||||||+|.+...+ .....+..++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRI 158 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhc
Confidence 53221 1122 223344555544333 37799999999885321 023455666666
Q ss_pred hcCCCCCCCeEEEEecCCC---cccchhccCCCCccc-eeecCCCCHHHHHHHHHHHhcC--C-CCCCcccHHHHHHhCC
Q 007255 421 MDGLEQAKGILVLAATNRP---HAIDAALMRPGRFDL-VLYVPPPDLEARHEILRVHTRN--M-KVGDDVDLRSIAEETE 493 (611)
Q Consensus 421 l~~~~~~~~~~vI~~tn~~---~~ld~al~r~gRf~~-~i~~~~p~~~~r~~il~~~~~~--~-~~~~~~~~~~la~~~~ 493 (611)
++......++.+|++||.+ +.+++++.+ ||.. .+.|++|+.+++.+|++..+.. . ...++..++.+++.+.
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 5533215678999999988 678999998 8875 8999999999999999977653 1 1223445677887776
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Q 007255 494 ---LFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSL 533 (611)
Q Consensus 494 ---g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~ 533 (611)
| .++.+.++|+.+...+..+. ...++.+++..++...
T Consensus 237 ~~~G-~~r~~~~~l~~a~~~a~~~~--~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 237 REHG-DARRALDLLRVAGEIAERRR--EERVRREHVYSARAEI 276 (387)
T ss_dssp SSSC-CHHHHHHHHHHHHHHHHHTT--CSCBCHHHHHHHHHHH
T ss_pred Hhcc-CHHHHHHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHH
Confidence 7 67888899998887766432 4568888888887655
No 89
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.70 E-value=2.2e-16 Score=161.54 Aligned_cols=196 Identities=22% Similarity=0.279 Sum_probs=142.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccc
Q 007255 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAH 93 (611)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~ 93 (611)
....+++++|.+..++.+...+..... +...+.++||+||||||||++++++++.++.+++.++++.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKA--------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHH--------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS--
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHc--------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC--
Confidence 345679999999999999988754211 0124578999999999999999999999999999998876532
Q ss_pred ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----C-------CCCC
Q 007255 94 VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----K-------TSVP 161 (611)
Q Consensus 94 ~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~-------~~~~ 161 (611)
...+...+.. ....+++|||||+|.+.. ..+..|+..++..... . ....
T Consensus 77 ----~~~l~~~l~~-----~~~~~~~l~lDEi~~l~~----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 ----PGDLAAILAN-----SLEEGDILFIDEIHRLSR----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp ----HHHHHHHHTT-----TCCTTCEEEETTTTSCCH----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred ----hHHHHHHHHH-----hccCCCEEEEECCccccc----------chHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 2222222222 123578999999998853 4566777777754210 0 0113
Q ss_pred cEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCCccccHHHHHHHH
Q 007255 162 HVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEALCREA 240 (611)
Q Consensus 162 ~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~~~~dl~~l~~~a 240 (611)
++.+|++||.+..+++++.+ ||...+.+++|+.+++..+++.++....... +..+..++..+.|+ .+.+.++++.+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHH
Confidence 57899999999999999988 9977999999999999999999887654432 23477788887665 46666766665
Q ss_pred H
Q 007255 241 T 241 (611)
Q Consensus 241 ~ 241 (611)
.
T Consensus 215 ~ 215 (324)
T 1hqc_A 215 R 215 (324)
T ss_dssp T
T ss_pred H
Confidence 4
No 90
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.69 E-value=9e-17 Score=175.04 Aligned_cols=229 Identities=24% Similarity=0.270 Sum_probs=143.0
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc-------
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK------- 91 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~------- 91 (611)
++++|++++++.+.+.+........ . ++.+++|+||||||||++++++|..++.++..+++..+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~------~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKS------L-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSS------C-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhccc------C-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhH
Confidence 4599999999999877654322211 1 4578999999999999999999999999999998876433
Q ss_pred --ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC---------CCCC
Q 007255 92 --AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS---------KTSV 160 (611)
Q Consensus 92 --~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---------~~~~ 160 (611)
.+.|.....+...|..+.. ...|+||||+|.+.+...+ ..+..|+..++..... ....
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~~-----~~~vl~lDEid~l~~~~~~------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAGK-----LNPVFLLDEIDKMSSDFRG------DPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp ----------CHHHHHHTTCS-----SSEEEEEEESSSCC---------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred HHHHhccCchHHHHHHHHhhc-----cCCEEEEhhhhhhhhhhcc------CHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 2333333344444444321 2349999999999775321 2456677777643211 1112
Q ss_pred CcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhc-----CCCCC------CcccHHHHHHhccC-C
Q 007255 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTK-----KVPLD------ANVDLEAIATSCNG-Y 228 (611)
Q Consensus 161 ~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~-----~~~~~------~~~~~~~la~~~~g-~ 228 (611)
.++++|+|||.++.+++++++ ||. .|.|+.|+.+++..|++.++. ..... .+..+..++..+.+ .
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 468999999999999999999 995 799999999999999988752 22221 12235555554443 3
Q ss_pred ccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHh
Q 007255 229 VGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARS 270 (611)
Q Consensus 229 ~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~ 270 (611)
..+.+++.+..++..+..+... .......++.+++.....
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~--~~~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVA--EERKRITVTEKNLQDFIG 339 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHT--TCCSCCEECTTTTHHHHC
T ss_pred chhHHHHHHHHHHHHHHHHHHh--cCCcceecCHHHHHHHhC
Confidence 4466666555555444333221 112334567777766654
No 91
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.69 E-value=3.4e-17 Score=186.45 Aligned_cols=189 Identities=22% Similarity=0.281 Sum_probs=137.3
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEe
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFS 354 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~ 354 (611)
....+++++|.+...+.+.+.+.. ....++||+||||||||++|+++|..+ ++.++.
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 345788999999999999888763 345679999999999999999999997 888888
Q ss_pred ecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEE
Q 007255 355 LSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLA 434 (611)
Q Consensus 355 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~ 434 (611)
+++ ..+|.|+++..++.+|..+....|+||||| +. ....+.|+..| ..+.+.+|+
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~~------------~~~~~~L~~~l----~~~~v~~I~ 296 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------AA------------IDASNILKPSL----ARGELQCIG 296 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC------C--------------------CCCT----TSSSCEEEE
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------Cc------------hhHHHHHHHHH----hcCCEEEEe
Confidence 887 457889999999999999999899999999 00 12334444444 356799999
Q ss_pred ecCCCc-----ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcc-----cHHHHHHh-----CCCCCHHH
Q 007255 435 ATNRPH-----AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDV-----DLRSIAEE-----TELFTGAE 499 (611)
Q Consensus 435 ~tn~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-----~~~~la~~-----~~g~s~~~ 499 (611)
+||.++ .+|+++.| ||+ .|.|+.|+.+++.+||+.....+.....+ .+..++.. .+++.++.
T Consensus 297 at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ 373 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDK 373 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHH
T ss_pred CCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcH
Confidence 999988 79999999 996 69999999999999999877765433332 24444443 34567778
Q ss_pred HHHHHHHHHHHHHHh
Q 007255 500 LEGLCREAGIVALRE 514 (611)
Q Consensus 500 i~~~~~~a~~~a~~~ 514 (611)
...++.+|+..+..+
T Consensus 374 ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 374 AIDLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888887665544
No 92
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.69 E-value=6e-17 Score=151.92 Aligned_cols=159 Identities=22% Similarity=0.300 Sum_probs=119.0
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEee
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSL 355 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~~ 355 (611)
+..|++++|.+...+.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 45688999999988888877653 335679999999999999999999987 7888999
Q ss_pred cchhhc--cccccchHHHHHHHHHHHHh-cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEE
Q 007255 356 SGAELY--SMYVGESEALLRNTFQRARL-AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILV 432 (611)
Q Consensus 356 ~~~~~~--~~~~g~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 432 (611)
++..+. ..+.+.....+..++..+.. ..+.||+|||+|.+...+.... . ..+.+.+...+ ...++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~--~----~~~~~~l~~~~----~~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG--A----MDAGNMLKPAL----ARGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT--------C----CCCHHHHHHHH----HTTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc--h----HHHHHHHHHhh----ccCCeEE
Confidence 988876 35566667778888876643 5577999999999975532111 1 11223333333 2356788
Q ss_pred EEecCCCc-----ccchhccCCCCccceeecCCCCHHHHHHHH
Q 007255 433 LAATNRPH-----AIDAALMRPGRFDLVLYVPPPDLEARHEIL 470 (611)
Q Consensus 433 I~~tn~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~il 470 (611)
|++||.++ .+++++.+ ||+ .+.++.|+.++|.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88999876 68999999 999 6999999999998875
No 93
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.69 E-value=2.4e-15 Score=154.22 Aligned_cols=215 Identities=21% Similarity=0.254 Sum_probs=155.1
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcccc
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~ 364 (611)
...++++++|++.+++.+...+..... ...++.+++|+||||||||++++++|.++++++...+++.+..
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~--------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~-- 89 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKM--------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK-- 89 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHH--------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS--
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC--
Confidence 345788999999888888776653100 1134567999999999999999999999999887666544321
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC----------------CCC
Q 007255 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE----------------QAK 428 (611)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~~~ 428 (611)
...+..++.. ...++|+||||+|.+.. ...+.|+..++... .-.
T Consensus 90 ----~~~l~~~~~~--~~~~~v~~iDE~~~l~~--------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~ 149 (334)
T 1in4_A 90 ----QGDMAAILTS--LERGDVLFIDEIHRLNK--------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 149 (334)
T ss_dssp ----HHHHHHHHHH--CCTTCEEEEETGGGCCH--------------HHHHHHHHHHHTSCCCC---------------C
T ss_pred ----HHHHHHHHHH--ccCCCEEEEcchhhcCH--------------HHHHHHHHHHHhcccceeeccCcccccccccCC
Confidence 1223333321 23567999999998842 12233343343211 012
Q ss_pred CeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHHhCCCCCHHHHHHHHHHH
Q 007255 429 GILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGD-DVDLRSIAEETELFTGAELEGLCREA 507 (611)
Q Consensus 429 ~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~g~s~~~i~~~~~~a 507 (611)
.+.++++|+.+..+++++++ ||...+.+++|+.+++.+|++...+...... +..+..++..+.| +++.+.++++.+
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 46788899999999999999 9998899999999999999997766554443 3447889999988 789999999988
Q ss_pred HHHHHHhhcccccccHHHHHHHHhhcC
Q 007255 508 GIVALREDISATAVRNRHFQTVKDSLK 534 (611)
Q Consensus 508 ~~~a~~~~~~~~~i~~~~~~~~l~~~~ 534 (611)
...|..+. ...|+.+++..++..+.
T Consensus 227 ~~~a~~~~--~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 227 RDMLTVVK--ADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHT--CSSBCHHHHHHHHHHHT
T ss_pred HHHHHHcC--CCCcCHHHHHHHHHHhC
Confidence 87776543 45699999999998765
No 94
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=8e-17 Score=174.99 Aligned_cols=227 Identities=15% Similarity=0.163 Sum_probs=140.6
Q ss_pred ccccCCCcccccccchhHHHHHHHHHhhccC-CChhHHhhcCC---CCCCCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 280 VTVEIPKVTWEDIGGLRDLKKKLQQAVEWPI-KHSTAFSRLGI---SPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 280 ~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~-~~~~~~~~~~~---~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
+.....+.+|++++|++..++.+.+++.... ..+..+.+.|. .+++++||+||||||||++|+++|++++.+++.+
T Consensus 29 W~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 29 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 3334566789999999999999998876411 11112222222 3567899999999999999999999999999999
Q ss_pred cchhhccccccchHH-------HHHHHHHHH-----HhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcC
Q 007255 356 SGAELYSMYVGESEA-------LLRNTFQRA-----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (611)
Q Consensus 356 ~~~~~~~~~~g~~~~-------~~~~~~~~a-----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 423 (611)
+++++...+...... .+..+|..+ ....+.||||||+|.+.... ...+..|+..++.
T Consensus 109 n~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----------~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 109 NASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----------RGGVGQLAQFCRK 177 (516)
T ss_dssp CTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----------TTHHHHHHHHHHH
T ss_pred eCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----------HHHHHHHHHHHHh
Confidence 998775532111000 011222222 12457899999999985421 1234566666652
Q ss_pred CCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCC-CCcccHHHHHHhCCCCCHHHHHH
Q 007255 424 LEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKV-GDDVDLRSIAEETELFTGAELEG 502 (611)
Q Consensus 424 ~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g~s~~~i~~ 502 (611)
....+++|+++.....+. .+.| +...+.|+.|+.+++.+++...+....+ .++..+..+++.+.| +.+.+.+
T Consensus 178 --~~~~iIli~~~~~~~~l~-~l~~---r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-diR~~i~ 250 (516)
T 1sxj_A 178 --TSTPLILICNERNLPKMR-PFDR---VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-DIRQVIN 250 (516)
T ss_dssp --CSSCEEEEESCTTSSTTG-GGTT---TSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-CHHHHHH
T ss_pred --cCCCEEEEEcCCCCccch-hhHh---ceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHH
Confidence 333455555444434443 3443 4458999999999999999866543222 234458899998876 3444444
Q ss_pred HHHHHHHHHHHhhcccccccHHHHHHHHh
Q 007255 503 LCREAGIVALREDISATAVRNRHFQTVKD 531 (611)
Q Consensus 503 ~~~~a~~~a~~~~~~~~~i~~~~~~~~l~ 531 (611)
+++.+ +. ....++.+++..++.
T Consensus 251 ~L~~~---~~----~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 251 LLSTI---ST----TTKTINHENINEISK 272 (516)
T ss_dssp HHTHH---HH----HSSCCCTTHHHHHHH
T ss_pred HHHHH---Hh----cCCCCchHHHHHHHH
Confidence 44332 22 223455555555443
No 95
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.68 E-value=3.2e-16 Score=152.80 Aligned_cols=205 Identities=16% Similarity=0.126 Sum_probs=142.8
Q ss_pred Ccccccccc---hhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchh
Q 007255 286 KVTWEDIGG---LRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAE 359 (611)
Q Consensus 286 ~~~~~~i~g---~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~ 359 (611)
..+|++++| .+.+.+.+...+.. ..+++++|+||||||||++|++++.++ +.+++.+++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 367888886 24566666665542 245689999999999999999999887 47788888887
Q ss_pred hccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCe-EEEEecCC
Q 007255 360 LYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGI-LVLAATNR 438 (611)
Q Consensus 360 ~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-~vI~~tn~ 438 (611)
+...+.... . ....+.+|+|||+|.+... ......|+..++.....+.+ +|+.+++.
T Consensus 91 ~~~~~~~~~--------~--~~~~~~vliiDe~~~~~~~------------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 91 HASISTALL--------E--GLEQFDLICIDDVDAVAGH------------PLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGGSCGGGG--------T--TGGGSSEEEEETGGGGTTC------------HHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred HHHHHHHHH--------H--hccCCCEEEEeccccccCC------------HHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 765432111 1 1145679999999987422 11234444444433334444 55545444
Q ss_pred Cc---ccchhccCCCCcc--ceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007255 439 PH---AIDAALMRPGRFD--LVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVAL 512 (611)
Q Consensus 439 ~~---~ld~al~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~ 512 (611)
+. .+++++.+ ||. ..+.+++|+.+++.++++..+...... ++..++.+++.+.| +.+++.+++..+...+.
T Consensus 149 ~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~ 225 (242)
T 3bos_A 149 PMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASM 225 (242)
T ss_dssp TTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 54 45678887 885 799999999999999999877654433 34457888898877 88999999998888775
Q ss_pred HhhcccccccHHHHHHHHh
Q 007255 513 REDISATAVRNRHFQTVKD 531 (611)
Q Consensus 513 ~~~~~~~~i~~~~~~~~l~ 531 (611)
.+ .+.|+.+++..++.
T Consensus 226 ~~---~~~It~~~v~~~l~ 241 (242)
T 3bos_A 226 VH---QRKLTIPFVKEMLR 241 (242)
T ss_dssp HH---TCCCCHHHHHHHHT
T ss_pred Hh---CCCCcHHHHHHHhh
Confidence 44 35689988888764
No 96
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.68 E-value=4.2e-16 Score=151.94 Aligned_cols=209 Identities=16% Similarity=0.203 Sum_probs=147.4
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecc------
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSG------ 357 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~------ 357 (611)
..+..+++++|.+...+.+.+.+.. + ..++.++|+||||+|||++++++++.++........
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 4456788999999999999888763 1 234579999999999999999999987542110000
Q ss_pred ----------hhhccc--cccchHHHHHHHHHHHH----hcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHh
Q 007255 358 ----------AELYSM--YVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEM 421 (611)
Q Consensus 358 ----------~~~~~~--~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l 421 (611)
.++... ........++.++..+. ...+.+|+|||+|.+. ....+.|+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------------~~~~~~l~~~l 150 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNALLKTL 150 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------------HHHHHHHHHHH
T ss_pred HHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------------HHHHHHHHHHH
Confidence 000000 00112334445554432 2346799999999872 34567788888
Q ss_pred cCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHH
Q 007255 422 DGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAEL 500 (611)
Q Consensus 422 ~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i 500 (611)
+. ...++.+|++||.++.+++++.+ |+ ..+.+++|+.++..++++..+...... ++..++.+++.+.| +++.+
T Consensus 151 ~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~ 224 (250)
T 1njg_A 151 EE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDA 224 (250)
T ss_dssp HS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHH
T ss_pred hc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 73 45678899999999999999988 76 489999999999999999777654432 34457889999988 78999
Q ss_pred HHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 007255 501 EGLCREAGIVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 501 ~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l 530 (611)
.++++.+...+ ...|+.+++..++
T Consensus 225 ~~~~~~~~~~~------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 225 LSLTDQAIASG------DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHTTT------TSSBCHHHHHHHS
T ss_pred HHHHHHHHhcc------CceecHHHHHHHh
Confidence 99988775332 2368888887765
No 97
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=5.6e-16 Score=160.42 Aligned_cols=211 Identities=16% Similarity=0.127 Sum_probs=149.2
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhC------CcEEee
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE------ASFFSL 355 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~------~~~~~~ 355 (611)
....+.+|++++|++.+++.+...+.. + .. .++||+||||||||++|+++|..++ ..++.+
T Consensus 29 ~k~~p~~~~~i~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 95 (353)
T 1sxj_D 29 EKYRPKNLDEVTAQDHAVTVLKKTLKS-----------A-NL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILEL 95 (353)
T ss_dssp HHTCCSSTTTCCSCCTTHHHHHHHTTC-----------T-TC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcCCCCHHHhhCCHHHHHHHHHHHhc-----------C-CC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEE
Confidence 345567899999999999999888763 1 22 3499999999999999999999864 357777
Q ss_pred cchhhccccccchHHHHHHHHHHHHh----------------cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHH
Q 007255 356 SGAELYSMYVGESEALLRNTFQRARL----------------AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLT 419 (611)
Q Consensus 356 ~~~~~~~~~~g~~~~~~~~~~~~a~~----------------~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 419 (611)
++++..+ ...++..+..... ..+.||||||+|.+. ....+.|+.
T Consensus 96 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~--------------~~~~~~Ll~ 155 (353)
T 1sxj_D 96 NASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT--------------ADAQSALRR 155 (353)
T ss_dssp CSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC--------------HHHHHHHHH
T ss_pred ccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC--------------HHHHHHHHH
Confidence 7765421 1112222211111 234599999999873 234577888
Q ss_pred HhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHH
Q 007255 420 EMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGA 498 (611)
Q Consensus 420 ~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~ 498 (611)
.|+. ......+|++||.++.+++++.+ |+. .+.|++|+.++...+++..+....+. ++..++.+++.+.| +.+
T Consensus 156 ~le~--~~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r 229 (353)
T 1sxj_D 156 TMET--YSGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLR 229 (353)
T ss_dssp HHHH--TTTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHH
T ss_pred HHHh--cCCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 8873 44567777889999999999998 887 89999999999999999776554432 44567889999888 567
Q ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Q 007255 499 ELEGLCREAGIVALREDISATAVRNRHFQTVKDS 532 (611)
Q Consensus 499 ~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~ 532 (611)
.+.++++.+...+-... ....|+.+++..++..
T Consensus 230 ~~~~~l~~~~~~~~~~~-~~~~It~~~v~~~~~~ 262 (353)
T 1sxj_D 230 RGITLLQSASKGAQYLG-DGKNITSTQVEELAGV 262 (353)
T ss_dssp HHHHHHHHTHHHHHHHC-SCCCCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCc-cCccccHHHHHHHhCC
Confidence 77777776655443221 1115888888777653
No 98
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.67 E-value=1e-15 Score=162.20 Aligned_cols=209 Identities=20% Similarity=0.241 Sum_probs=147.1
Q ss_pred ccccccCCcHHHH---HHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccc
Q 007255 16 KAEEAIGGNRAAV---EALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA 92 (611)
Q Consensus 16 ~~~~~i~G~~~~~---~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~ 92 (611)
..+++++|++..+ +.|...+... ...++||+||||||||++++++++.++.+++.+++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~--- 86 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS--- 86 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC---
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC---
Confidence 6789999999999 7777776541 22689999999999999999999999999999986543
Q ss_pred cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEee--c
Q 007255 93 HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST--N 170 (611)
Q Consensus 93 ~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~tt--n 170 (611)
....++.++..+......++++||||||+|.+.. ..+..|+..++.. .+++|++| |
T Consensus 87 ----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~----------~~q~~LL~~le~~--------~v~lI~att~n 144 (447)
T 3pvs_A 87 ----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK----------SQQDAFLPHIEDG--------TITFIGATTEN 144 (447)
T ss_dssp ----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----------------CCHHHHHTT--------SCEEEEEESSC
T ss_pred ----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH----------HHHHHHHHHHhcC--------ceEEEecCCCC
Confidence 2344666666666555556789999999998854 3356678888752 35666665 4
Q ss_pred CcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCC-------CC-CcccHHHHHHhccCCccccHHHHHHHHHH
Q 007255 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVP-------LD-ANVDLEAIATSCNGYVGADLEALCREATM 242 (611)
Q Consensus 171 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~-------~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~~ 242 (611)
+...+++++.+ |+. .+.+++|+.+++..+++..+.... .. .+..++.++..+.| ..+.+.++++.+..
T Consensus 145 ~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~ 220 (447)
T 3pvs_A 145 PSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMAD 220 (447)
T ss_dssp GGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHH
T ss_pred cccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 45589999998 885 788999999999999999887522 11 12236777777655 45566667776654
Q ss_pred HHhhhcccccccccccchhHHHHHHHHhcc
Q 007255 243 SAVKRSSDANECAGVLSVTMEDWRHARSVV 272 (611)
Q Consensus 243 ~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i 272 (611)
.+... ..+...++.+++..+....
T Consensus 221 ~a~~~------~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 221 MAEVD------DSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HSCBC------TTSCEECCHHHHHHHHTCC
T ss_pred hcccc------cCCCCccCHHHHHHHHhhh
Confidence 43211 0122357788887776544
No 99
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.67 E-value=2.8e-16 Score=159.78 Aligned_cols=204 Identities=18% Similarity=0.252 Sum_probs=142.3
Q ss_pred ccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhcccc--
Q 007255 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMY-- 364 (611)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~-- 364 (611)
++++|++.+++.+...+....... .....+..++||+||||||||++|+++|..+ +.+++.++++.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 457899999998888776421000 0012334579999999999999999999998 5568888887664321
Q ss_pred ---c-------cchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCC--------
Q 007255 365 ---V-------GESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ-------- 426 (611)
Q Consensus 365 ---~-------g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------- 426 (611)
. |... ...+........++|+||||+|.+. ..+.+.|+..|+...-
T Consensus 93 ~~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~le~~~~~~~~~~~~ 156 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKAH--------------PDVFNILLQMLDDGRLTDSHGRTV 156 (311)
T ss_dssp HHHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGSC--------------HHHHHHHHHHHHHSEEECTTSCEE
T ss_pred HHhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhcC--------------HHHHHHHHHHHhcCEEEcCCCCEE
Confidence 1 1110 0123333444556899999999872 4577888888864321
Q ss_pred -CCCeEEEEecCC--------------------------CcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCC--
Q 007255 427 -AKGILVLAATNR--------------------------PHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNM-- 477 (611)
Q Consensus 427 -~~~~~vI~~tn~--------------------------~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~-- 477 (611)
..++++|+|||. ...+++++++ ||+.++.+++|+.+++..|++.++..+
T Consensus 157 ~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~ 234 (311)
T 4fcw_A 157 DFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRA 234 (311)
T ss_dssp ECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHH
T ss_pred ECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 136789999998 4467888887 999999999999999999999765442
Q ss_pred -------CC-CCcccHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhh
Q 007255 478 -------KV-GDDVDLRSIAEETE--LFTGAELEGLCREAGIVALRED 515 (611)
Q Consensus 478 -------~~-~~~~~~~~la~~~~--g~s~~~i~~~~~~a~~~a~~~~ 515 (611)
.. .++..++.|+.... ..+.++++++++.+...+..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 282 (311)
T 4fcw_A 235 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 282 (311)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHH
T ss_pred HHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHH
Confidence 11 13344677777765 5678899999998877666544
No 100
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.66 E-value=1.5e-15 Score=155.38 Aligned_cols=178 Identities=19% Similarity=0.285 Sum_probs=129.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~ 95 (611)
..|++++|++++++.|.+++.. -..+..+|++||||||||++++++++.++.+++.+++++..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~----- 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK----- 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-----
T ss_pred CCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-----
Confidence 6789999999999999998752 23456788899999999999999999999999999987632
Q ss_pred chHHHHHHHHHHHH-hhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccc
Q 007255 96 ESEKALREAFSQAS-SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA 174 (611)
Q Consensus 96 ~~~~~l~~~f~~~~-~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~ 174 (611)
...++..+.... .....+.+.||||||+|.+.. ...+..|+..++... .++.+|++||.+..
T Consensus 86 --~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~---------~~~~~~L~~~le~~~------~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 86 --IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL---------AESQRHLRSFMEAYS------SNCSIIITANNIDG 148 (324)
T ss_dssp --HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG---------HHHHHHHHHHHHHHG------GGCEEEEEESSGGG
T ss_pred --HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc---------HHHHHHHHHHHHhCC------CCcEEEEEeCCccc
Confidence 233444333322 222234678999999998851 245677788877532 25688999999999
Q ss_pred ccHHhhccCCcceEEEccCCCHHHHHHHHHHhh-------cC--CCCCCcccHHHHHHhccCCcc
Q 007255 175 IDPALRRSGRFDAEVEVTVPTAEERFEILKLYT-------KK--VPLDANVDLEAIATSCNGYVG 230 (611)
Q Consensus 175 l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~-------~~--~~~~~~~~~~~la~~~~g~~~ 230 (611)
+++++++ ||. .+.|++|+.+++.+|++.+. .. ..++....+..++..+.|...
T Consensus 149 l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R 210 (324)
T 3u61_B 149 IIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR 210 (324)
T ss_dssp SCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT
T ss_pred cCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH
Confidence 9999999 885 79999999999877665433 22 222221346777777665433
No 101
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.66 E-value=4.5e-16 Score=158.67 Aligned_cols=206 Identities=19% Similarity=0.195 Sum_probs=144.5
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-----CCcEEeecc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSG 357 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~~ 357 (611)
...+.+|++++|++.+++.+...+.. + ..+ ++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-----------K-NIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-----------T-CCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-----------C-CCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 45567899999999999988887653 1 222 49999999999999999999987 345677777
Q ss_pred hhhccccccchHHHHHHHHHHHH--hcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEe
Q 007255 358 AELYSMYVGESEALLRNTFQRAR--LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAA 435 (611)
Q Consensus 358 ~~~~~~~~g~~~~~~~~~~~~a~--~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~ 435 (611)
++..+ .......+........ ...+.|++|||+|.+. ....+.|+..++ .+..++.+|++
T Consensus 77 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------------~~~~~~L~~~le--~~~~~~~~i~~ 138 (319)
T 2chq_A 77 SDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT--------------ADAQAALRRTME--MYSKSCRFILS 138 (319)
T ss_dssp TSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC--------------HHHHHTTGGGTS--SSSSSEEEEEE
T ss_pred ccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC--------------HHHHHHHHHHHH--hcCCCCeEEEE
Confidence 65432 1111122222211100 1346799999999873 244577777777 35567889999
Q ss_pred cCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007255 436 TNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALRE 514 (611)
Q Consensus 436 tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~ 514 (611)
||.++.+++++.+ |+. .+.|++|+.+++.+++...++..+.. ++..++.++..+.| +.+.+.+.++.+...
T Consensus 139 ~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~---- 210 (319)
T 2chq_A 139 CNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI---- 210 (319)
T ss_dssp ESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHHS----
T ss_pred eCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc----
Confidence 9999999999998 887 89999999999999999877665543 34457788887766 556666666544321
Q ss_pred hcccccccHHHHHHHH
Q 007255 515 DISATAVRNRHFQTVK 530 (611)
Q Consensus 515 ~~~~~~i~~~~~~~~l 530 (611)
...++.+++..++
T Consensus 211 ---~~~i~~~~v~~~~ 223 (319)
T 2chq_A 211 ---GEVVDADTIYQIT 223 (319)
T ss_dssp ---SSCBCHHHHHHHT
T ss_pred ---CCCCCHHHHHHHH
Confidence 2346666665554
No 102
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.66 E-value=6.1e-16 Score=159.96 Aligned_cols=216 Identities=23% Similarity=0.286 Sum_probs=134.7
Q ss_pred CCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEe----ecchhh
Q 007255 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFS----LSGAEL 360 (611)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~----~~~~~~ 360 (611)
+..+|++++|++.+++.+...... ....++||+||||||||++|+++|+.++..... +++...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 567899999999988775544332 123469999999999999999999988631100 011000
Q ss_pred ---------------------ccccccchHHHH------HHHHHHH---------HhcCCcEEEEcccccccccCCCCCC
Q 007255 361 ---------------------YSMYVGESEALL------RNTFQRA---------RLAAPSIIFFDEADVVGAKRGGSSS 404 (611)
Q Consensus 361 ---------------------~~~~~g~~~~~~------~~~~~~a---------~~~~p~il~iDeid~l~~~~~~~~~ 404 (611)
.....+.++..+ ...+... ....++||||||+|.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~-------- 157 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE-------- 157 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC--------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC--------
Confidence 000011111110 1111111 11246799999999872
Q ss_pred CCcchhHHHHHHHHHHhcCC----C-------CCCCeEEEEecCCCc-ccchhccCCCCccceeecCCC-CHHHHHHHHH
Q 007255 405 TSITVGERLLSTLLTEMDGL----E-------QAKGILVLAATNRPH-AIDAALMRPGRFDLVLYVPPP-DLEARHEILR 471 (611)
Q Consensus 405 ~~~~~~~~~~~~ll~~l~~~----~-------~~~~~~vI~~tn~~~-~ld~al~r~gRf~~~i~~~~p-~~~~r~~il~ 471 (611)
....+.|+..|+.. . ...++++|+|||..+ .+++++++ ||+..+.++.| +.+.+.+|++
T Consensus 158 ------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 158 ------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIR 229 (350)
T ss_dssp ------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHH
T ss_pred ------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 34566777766531 1 123789999999744 89999999 99988999998 6777878886
Q ss_pred HHh-------------------------------cCCCCCCcccHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHhhcc
Q 007255 472 VHT-------------------------------RNMKVGDDVDLRSIAEETEL---FTGAELEGLCREAGIVALREDIS 517 (611)
Q Consensus 472 ~~~-------------------------------~~~~~~~~~~~~~la~~~~g---~s~~~i~~~~~~a~~~a~~~~~~ 517 (611)
..+ .++. .++..++.++..+.+ -+.+.+.++++.|...|..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~-- 306 (350)
T 1g8p_A 230 RRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVE-APNTALYDCAALCIALGSDGLRGELTLLRSARALAALEG-- 306 (350)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCB-CCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC--
Confidence 521 1121 233334555554432 256888888888877776543
Q ss_pred cccccHHHHHHHHhh
Q 007255 518 ATAVRNRHFQTVKDS 532 (611)
Q Consensus 518 ~~~i~~~~~~~~l~~ 532 (611)
...++..|+..++..
T Consensus 307 ~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 307 ATAVGRDHLKRVATM 321 (350)
T ss_dssp CSBCCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHH
Confidence 234788888777654
No 103
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.66 E-value=2.4e-15 Score=157.14 Aligned_cols=244 Identities=16% Similarity=0.189 Sum_probs=148.4
Q ss_pred ccCCcHHHHHHHHHHHHhhhhCchHHH-----------------hcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 007255 20 AIGGNRAAVEALRELITFPLLYSSQAQ-----------------KLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (611)
Q Consensus 20 ~i~G~~~~~~~l~~~l~~~~~~~~~~~-----------------~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~ 82 (611)
.|+|++++++.|..++...+....... ......+.++||+||||||||++++++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999988854332222100 112235678999999999999999999999999999
Q ss_pred EEccccccc-ccccch-HHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCC----chhhHHHHHHHHHHHhcCCC-
Q 007255 83 VISPHSVHK-AHVGES-EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR----REQDVRIASQLFTLMDSNKP- 155 (611)
Q Consensus 83 ~v~~~~~~~-~~~~~~-~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~----~~~~~~~~~~ll~~l~~~~~- 155 (611)
.+++..+.. .+.|.. ...+...+...........++||||||+|.+...+++. ......++..|+..++....
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 999887652 333332 33444554433221122357899999999998753211 11122478899999985310
Q ss_pred ---CC-----------CCCCcEEEEEeecC-----------------------------------------cccccHHhh
Q 007255 156 ---SK-----------TSVPHVVVVASTNR-----------------------------------------VDAIDPALR 180 (611)
Q Consensus 156 ---~~-----------~~~~~v~ii~ttn~-----------------------------------------~~~l~~~l~ 180 (611)
.. ....++++|+++|. ...+.|++.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 00 00134677777762 113567787
Q ss_pred ccCCcceEEEccCCCHHHHHHHHHH----hhc-------CCC--CC-CcccHHHHHHhcc--CCccccHHHHHHHHHHHH
Q 007255 181 RSGRFDAEVEVTVPTAEERFEILKL----YTK-------KVP--LD-ANVDLEAIATSCN--GYVGADLEALCREATMSA 244 (611)
Q Consensus 181 ~~~Rf~~~i~~~~p~~~~r~~Il~~----~~~-------~~~--~~-~~~~~~~la~~~~--g~~~~dl~~l~~~a~~~a 244 (611)
+ ||+..+.|++++.++...|+.. ++. ... +. .+..+..++..+. ....+.+.+++..++..+
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 7 9988899999999999999962 111 111 11 1223566666543 356799999999988877
Q ss_pred hhhcccccccccccchhHHHHHH
Q 007255 245 VKRSSDANECAGVLSVTMEDWRH 267 (611)
Q Consensus 245 ~~r~~~~~~~~~~~~v~~ed~~~ 267 (611)
+.+.... ......++.+++..
T Consensus 340 ~~~~~~~--~~~~~~i~~~~v~~ 360 (376)
T 1um8_A 340 MFDLPKL--KGSEVRITKDCVLK 360 (376)
T ss_dssp HHTGGGG--TTSEEEECHHHHTT
T ss_pred HhhccCC--CCCEEEEeHHHhcC
Confidence 6654321 12334566666543
No 104
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.66 E-value=1e-15 Score=155.53 Aligned_cols=210 Identities=16% Similarity=0.231 Sum_probs=141.5
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccc-
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHV- 94 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~- 94 (611)
+.++|++.+++.+...+........ ...++..+++|+||||||||++++++++.+ +.+++.++++.+.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~----~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK----DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS----CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 4688999999999998865321100 011233589999999999999999999998 45688998876543210
Q ss_pred ----cch----HHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC-----CCCC
Q 007255 95 ----GES----EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK-----TSVP 161 (611)
Q Consensus 95 ----~~~----~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-----~~~~ 161 (611)
|.. .......+..+.. ...++||||||+|.+.+ ..+..|+..++...... ....
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~----------~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHP----------DVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCH----------HHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HHhcCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCH----------HHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 000 0000011222211 12368999999998854 67888899888643211 1113
Q ss_pred cEEEEEeecC--------------------------cccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCC-----
Q 007255 162 HVVVVASTNR--------------------------VDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV----- 210 (611)
Q Consensus 162 ~v~ii~ttn~--------------------------~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~----- 210 (611)
++++|+|||. ...+++++.+ ||+..+.+++|+.+++..|++.++...
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5779999998 4578889987 999899999999999999999876542
Q ss_pred --CCC---CcccHHHHHHhcc--CCccccHHHHHHHHHHHHhhh
Q 007255 211 --PLD---ANVDLEAIATSCN--GYVGADLEALCREATMSAVKR 247 (611)
Q Consensus 211 --~~~---~~~~~~~la~~~~--g~~~~dl~~l~~~a~~~a~~r 247 (611)
... .+..++.++...- ..+.+++.++++.++..+..+
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHH
Confidence 111 1223566666544 567899999999888766554
No 105
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.65 E-value=9.1e-15 Score=140.37 Aligned_cols=187 Identities=19% Similarity=0.208 Sum_probs=129.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEcccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVH 90 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~~~ 90 (611)
..+++++|.++.++.|.+++... .+.+++|+||||||||++++.+++.+ ...++.++++...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT
T ss_pred CCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc
Confidence 45789999999999999887531 23459999999999999999999986 3457777765432
Q ss_pred cccccchHHHHHHHHHHHHhh--hhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 007255 91 KAHVGESEKALREAFSQASSH--ALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS 168 (611)
Q Consensus 91 ~~~~~~~~~~l~~~f~~~~~~--~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~t 168 (611)
. ...+...+...... ....++.+|+|||+|.+.+ ..+..++..++... .++.+|++
T Consensus 81 ~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~l~~~l~~~~------~~~~~i~~ 138 (226)
T 2chg_A 81 G------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------DAQAALRRTMEMYS------KSCRFILS 138 (226)
T ss_dssp C------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH----------HHHHHHHHHHHHTT------TTEEEEEE
T ss_pred C------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH----------HHHHHHHHHHHhcC------CCCeEEEE
Confidence 1 12222222222211 1124688999999998854 34566777777632 25788889
Q ss_pred ecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHHHHHHH
Q 007255 169 TNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREAT 241 (611)
Q Consensus 169 tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l~~~a~ 241 (611)
+|.+..+++++.+ ||. .+.+++|+.++..++++.++...+.. .+..+..++..+.|. .+.+.++++.+.
T Consensus 139 ~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~-~r~l~~~l~~~~ 208 (226)
T 2chg_A 139 CNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGD-FRKAINALQGAA 208 (226)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred eCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 9999999999998 886 89999999999999999887644332 223466777766553 333444444443
No 106
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=1.9e-15 Score=154.23 Aligned_cols=203 Identities=19% Similarity=0.149 Sum_probs=146.5
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-----CCcEEeecc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSG 357 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~~ 357 (611)
...+..|++++|++..++.+.+.+.. + ..++ ++|+||||+|||++|+++|+.+ +..++.+++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 34566799999999999999988763 2 3334 9999999999999999999986 345777776
Q ss_pred hhhccccccchHHHHHHHHHHHH-------hcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCe
Q 007255 358 AELYSMYVGESEALLRNTFQRAR-------LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGI 430 (611)
Q Consensus 358 ~~~~~~~~g~~~~~~~~~~~~a~-------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 430 (611)
++..+ ...++.++.... ...+.|++|||+|.+. ....+.|++.++ .+..++
T Consensus 81 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~--------------~~~~~~L~~~le--~~~~~~ 138 (323)
T 1sxj_B 81 SDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT--------------AGAQQALRRTME--LYSNST 138 (323)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC--------------HHHHHTTHHHHH--HTTTTE
T ss_pred ccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC--------------HHHHHHHHHHHh--ccCCCc
Confidence 54321 234455555443 2237799999999873 234567777776 355678
Q ss_pred EEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007255 431 LVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGI 509 (611)
Q Consensus 431 ~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~ 509 (611)
.+|++||.++.+++++.+ |+. .+.|++|+.+++.++++..+...+.. ++..+..+++.+.| +.+.+.+++..+..
T Consensus 139 ~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~ 214 (323)
T 1sxj_B 139 RFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVA 214 (323)
T ss_dssp EEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred eEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHh
Confidence 888899999999999998 887 89999999999999999776543332 34457788888877 56666666665542
Q ss_pred HHHHhhcccccccHHHHHHHHh
Q 007255 510 VALREDISATAVRNRHFQTVKD 531 (611)
Q Consensus 510 ~a~~~~~~~~~i~~~~~~~~l~ 531 (611)
. ...++.+++..++.
T Consensus 215 ~-------~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 215 G-------HGLVNADNVFKIVD 229 (323)
T ss_dssp H-------HSSBCHHHHHHHHT
T ss_pred c-------CCCcCHHHHHHHHC
Confidence 1 13467777666654
No 107
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.65 E-value=8.1e-15 Score=142.72 Aligned_cols=188 Identities=18% Similarity=0.230 Sum_probs=134.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE--------------
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL-------------- 81 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~-------------- 81 (611)
..+++++|.+..++.|.+.+... ..+..++|+||||||||++++.+++.++...
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 56789999999999999887541 2346899999999999999999999875421
Q ss_pred ----------EEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHh
Q 007255 82 ----------TVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (611)
Q Consensus 82 ----------~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 151 (611)
+.++... ......+..++..........++.+|+|||+|.+.+ ..+..++..++
T Consensus 88 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~----------~~~~~l~~~l~ 151 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR----------HSFNALLKTLE 151 (250)
T ss_dssp HHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH----------HHHHHHHHHHH
T ss_pred HHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH----------HHHHHHHHHHh
Confidence 1111110 112233445554433322345678999999998743 45677778887
Q ss_pred cCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCcc
Q 007255 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVG 230 (611)
Q Consensus 152 ~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~ 230 (611)
.. ..++.+|++|+.+..+++.+.+ |+ ..+.+++|+.++..++++.++...... .+..++.++..+.| +.
T Consensus 152 ~~------~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~ 221 (250)
T 1njg_A 152 EP------PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 221 (250)
T ss_dssp SC------CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CH
T ss_pred cC------CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CH
Confidence 53 2357888889988899999988 76 589999999999999999888654433 22347788888877 56
Q ss_pred ccHHHHHHHHH
Q 007255 231 ADLEALCREAT 241 (611)
Q Consensus 231 ~dl~~l~~~a~ 241 (611)
+.+.++++.+.
T Consensus 222 ~~~~~~~~~~~ 232 (250)
T 1njg_A 222 RDALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777664
No 108
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.64 E-value=1.5e-15 Score=158.34 Aligned_cols=189 Identities=17% Similarity=0.253 Sum_probs=139.2
Q ss_pred CCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCc------------
Q 007255 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS------------ 351 (611)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~------------ 351 (611)
+.+.+|++++|++...+.+...+.. + ..++.+||+||||||||++|+++|+.+++.
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 3455789999999999999988763 1 334678999999999999999999998653
Q ss_pred ------------EEeecchhhccccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHH
Q 007255 352 ------------FFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLS 415 (611)
Q Consensus 352 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 415 (611)
++.++++.- .....++.++..+.. ..+.|++|||+|.+. ....+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------------~~~~~ 137 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFN 137 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------------HHHHH
T ss_pred HHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc--------------HHHHH
Confidence 222222110 011224455555432 236799999999872 34567
Q ss_pred HHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCC
Q 007255 416 TLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETEL 494 (611)
Q Consensus 416 ~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 494 (611)
.|++.++ ++..++++|++|+.++.+++++.+ |+ ..+.|++|+.++...+++..++..++. ++..+..+++.+.|
T Consensus 138 ~Ll~~le--~~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G 212 (373)
T 1jr3_A 138 ALLKTLE--EPPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 (373)
T ss_dssp HHHHHHH--SCCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS
T ss_pred HHHHHHh--cCCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC
Confidence 8888887 356788999999999999999988 87 489999999999999999777554433 33447889999988
Q ss_pred CCHHHHHHHHHHHHHH
Q 007255 495 FTGAELEGLCREAGIV 510 (611)
Q Consensus 495 ~s~~~i~~~~~~a~~~ 510 (611)
+.+++.+++..+...
T Consensus 213 -~~r~~~~~l~~~~~~ 227 (373)
T 1jr3_A 213 -SLRDALSLTDQAIAS 227 (373)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHh
Confidence 788888888777543
No 109
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.64 E-value=1.6e-15 Score=155.69 Aligned_cols=209 Identities=19% Similarity=0.150 Sum_probs=137.5
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecch------hhc
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA------ELY 361 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~------~~~ 361 (611)
.+++++|++.+++.+...+.. .+++||+||||||||++|+++|+.++.+++.+++. ++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 356788999999888777653 25799999999999999999999999999887762 222
Q ss_pred cccccch-HHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCC---------CCCCCeE
Q 007255 362 SMYVGES-EALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL---------EQAKGIL 431 (611)
Q Consensus 362 ~~~~g~~-~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~ 431 (611)
+...... .... .+.. .....+|+||||+|.+. ....+.|+..|+.. ..+.+++
T Consensus 90 g~~~~~~~~~~~--~~~~-g~l~~~vl~iDEi~~~~--------------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~ 152 (331)
T 2r44_A 90 GTMIYNQHKGNF--EVKK-GPVFSNFILADEVNRSP--------------AKVQSALLECMQEKQVTIGDTTYPLDNPFL 152 (331)
T ss_dssp EEEEEETTTTEE--EEEE-CTTCSSEEEEETGGGSC--------------HHHHHHHHHHHHHSEEEETTEEEECCSSCE
T ss_pred CceeecCCCCce--Eecc-CcccccEEEEEccccCC--------------HHHHHHHHHHHhcCceeeCCEEEECCCCEE
Confidence 2111000 0000 0000 00013699999999862 34567777777531 1244678
Q ss_pred EEEecCCCc-----ccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-----------------------Ccc
Q 007255 432 VLAATNRPH-----AIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-----------------------DDV 483 (611)
Q Consensus 432 vI~~tn~~~-----~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-----------------------~~~ 483 (611)
+|+|+|..+ .+++++++ ||+..+.++.|+.+++.+|++......... ++.
T Consensus 153 viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~ 230 (331)
T 2r44_A 153 VLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISES 230 (331)
T ss_dssp EEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHH
T ss_pred EEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHH
Confidence 888888543 38999999 999889999999999999999876543211 111
Q ss_pred cHHHHHHhC-------------------CCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Q 007255 484 DLRSIAEET-------------------ELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDS 532 (611)
Q Consensus 484 ~~~~la~~~-------------------~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~ 532 (611)
.++.++... .|.|.+.+..+++.|...|.... ...++.+|+..++..
T Consensus 231 ~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g--~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 231 LEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNN--RDYVLPEDIKEVAYD 296 (331)
T ss_dssp HHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTT--CSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHH
Confidence 133333221 14578888888777766665432 234777777776653
No 110
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.64 E-value=1.4e-15 Score=159.23 Aligned_cols=212 Identities=19% Similarity=0.183 Sum_probs=148.8
Q ss_pred cccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-----------CCcEEeecc
Q 007255 289 WEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-----------EASFFSLSG 357 (611)
Q Consensus 289 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-----------~~~~~~~~~ 357 (611)
.++++|.+...+.+.+.+...+. ...+++++|+||||||||++|+++++++ +.+++.+++
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 37899999999988877753221 1345689999999999999999999988 899999987
Q ss_pred hhhc-cc-----------------cccc-hHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHH-HHHH
Q 007255 358 AELY-SM-----------------YVGE-SEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERL-LSTL 417 (611)
Q Consensus 358 ~~~~-~~-----------------~~g~-~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~-~~~l 417 (611)
.... .. ..+. ....+..++..+....+ ||+|||+|.+.... .... +..|
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~----------~~~~~l~~l 158 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR----------GGDIVLYQL 158 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST----------TSHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC----------CCceeHHHH
Confidence 6643 11 1111 12334455544443344 99999999985321 0122 3333
Q ss_pred HHHhcCCCCCCCeEEEEecCCC---cccchhccCCCCccceeecCCCCHHHHHHHHHHHhcC-C--CCCCcccHHHHHHh
Q 007255 418 LTEMDGLEQAKGILVLAATNRP---HAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRN-M--KVGDDVDLRSIAEE 491 (611)
Q Consensus 418 l~~l~~~~~~~~~~vI~~tn~~---~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~-~--~~~~~~~~~~la~~ 491 (611)
+... .++.+|++||.+ +.+++++.+ ||...+.|++|+.+++.+|++..+.. + ...++..++.+++.
T Consensus 159 ~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~ 230 (384)
T 2qby_B 159 LRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAI 230 (384)
T ss_dssp HTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHH
T ss_pred hcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHH
Confidence 3221 678999999987 678999988 88779999999999999999977652 2 12234456777777
Q ss_pred CC---CCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Q 007255 492 TE---LFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSL 533 (611)
Q Consensus 492 ~~---g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~ 533 (611)
+. | +.+.+.++|+.|...+. ....++.+++..++...
T Consensus 231 ~~~~~G-~~r~a~~~l~~a~~~a~----~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 231 SAKEHG-DARKAVNLLFRAAQLAS----GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHTTCC-CHHHHHHHHHHHHHHTT----SSSCCCHHHHHHHHHHH
T ss_pred HHhccC-CHHHHHHHHHHHHHHhc----CCCccCHHHHHHHHHHH
Confidence 76 5 56677788888776664 34568888888777655
No 111
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.64 E-value=5.4e-16 Score=145.35 Aligned_cols=159 Identities=21% Similarity=0.339 Sum_probs=113.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~ 85 (611)
..+++++|.++.++.+.+.+.. ..+.+++|+||||||||++++++++.+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred ccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 4578899999999998887632 245789999999999999999999987 67888888
Q ss_pred ccccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcE
Q 007255 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (611)
Q Consensus 86 ~~~~~--~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v 163 (611)
+..+. ....+.....+..++..... ..+++||+|||+|.+.+...... ...+...+...++.. ++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vl~iDe~~~l~~~~~~~~--~~~~~~~l~~~~~~~--------~~ 152 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAK---QEGNVILFIDELHTMVGAGKADG--AMDAGNMLKPALARG--------EL 152 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHH---STTTEEEEEETGGGGTT--------CCCCHHHHHHHHHTT--------SC
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhh---cCCCeEEEEeCHHHHhccCcccc--hHHHHHHHHHhhccC--------Ce
Confidence 77654 23334445556666655432 34578999999999975432111 112234444444431 35
Q ss_pred EEEEeecCcc-----cccHHhhccCCcceEEEccCCCHHHHHHHH
Q 007255 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEIL 203 (611)
Q Consensus 164 ~ii~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il 203 (611)
.+|+++|.+. .+++++.+ ||. .+.+++|+.+++.+|+
T Consensus 153 ~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 153 HCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 6788888765 68999998 997 7999999999998875
No 112
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=2.9e-15 Score=153.19 Aligned_cols=206 Identities=21% Similarity=0.237 Sum_probs=142.6
Q ss_pred cCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCC-----cEEeecc
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA-----SFFSLSG 357 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~-----~~~~~~~ 357 (611)
...+.+|++++|++.+++.+...+.. + .. .++||+||||||||++|+++|+.+.. .++.+++
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKT-----------G-SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHH-----------T-CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHc-----------C-CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 35567899999999999999988763 2 22 24999999999999999999998742 3666666
Q ss_pred hhhccccccchHHHHHHHHHHH--HhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEe
Q 007255 358 AELYSMYVGESEALLRNTFQRA--RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAA 435 (611)
Q Consensus 358 ~~~~~~~~g~~~~~~~~~~~~a--~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~ 435 (611)
++..+. ......+....... ....+.|++|||+|.+. ....+.|+..++ .+..++.+|++
T Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------------~~~~~~L~~~le--~~~~~~~~i~~ 146 (327)
T 1iqp_A 85 SDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT--------------QDAQQALRRTME--MFSSNVRFILS 146 (327)
T ss_dssp TCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC--------------HHHHHHHHHHHH--HTTTTEEEEEE
T ss_pred cccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC--------------HHHHHHHHHHHH--hcCCCCeEEEE
Confidence 543220 11111121111000 01346799999999872 345677888887 35567888899
Q ss_pred cCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 007255 436 TNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALRE 514 (611)
Q Consensus 436 tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~ 514 (611)
||.++.+++++.+ |+. .+.|++|+.++...+++..+...+.. ++..++.++..+.| +.+.+.++++.+...
T Consensus 147 ~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~~---- 218 (327)
T 1iqp_A 147 CNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL---- 218 (327)
T ss_dssp ESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHTT----
T ss_pred eCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHhc----
Confidence 9999999999988 887 89999999999999999777655442 34457788888877 666666666654421
Q ss_pred hcccccccHHHHHHHH
Q 007255 515 DISATAVRNRHFQTVK 530 (611)
Q Consensus 515 ~~~~~~i~~~~~~~~l 530 (611)
...++.+++....
T Consensus 219 ---~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 219 ---DKKITDENVFMVA 231 (327)
T ss_dssp ---CSEECHHHHHHHT
T ss_pred ---CCCCCHHHHHHHH
Confidence 1245655555444
No 113
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.3e-15 Score=152.94 Aligned_cols=159 Identities=8% Similarity=0.059 Sum_probs=112.0
Q ss_pred ccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEeecchhhc
Q 007255 292 IGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSLSGAELY 361 (611)
Q Consensus 292 i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~~~~~~~~ 361 (611)
+.|.++-.+.+...+...+ ....+.+++|+||||||||++++++++++ +..++.+++..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i---------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL---------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 4455555555554444221 12456789999999999999999999998 3567888876543
Q ss_pred cc----------c------ccchHHHHHHHHHHH--HhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcC
Q 007255 362 SM----------Y------VGESEALLRNTFQRA--RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (611)
Q Consensus 362 ~~----------~------~g~~~~~~~~~~~~a--~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 423 (611)
+. . .+.+...+...|... ....+.|+++||+|.+. ..+++..|+....
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~- 158 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS- 158 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc-
Confidence 32 1 233556677788764 34567899999999985 1245555555433
Q ss_pred CCCCCCeEEEEecCCCcc----cchhccCCCCcc-ceeecCCCCHHHHHHHHHHHhcC
Q 007255 424 LEQAKGILVLAATNRPHA----IDAALMRPGRFD-LVLYVPPPDLEARHEILRVHTRN 476 (611)
Q Consensus 424 ~~~~~~~~vI~~tn~~~~----ld~al~r~gRf~-~~i~~~~p~~~~r~~il~~~~~~ 476 (611)
....++++|+++|..+. +++++.+ ||. ..|.|++++.++..+|++..++.
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 35568999999998764 5566666 886 68999999999999999977654
No 114
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.62 E-value=1.1e-15 Score=142.61 Aligned_cols=152 Identities=21% Similarity=0.267 Sum_probs=114.1
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----------CCcEEee
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSL 355 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----------~~~~~~~ 355 (611)
+..|++++|.+...+.+.+.+.. ..+.+++|+||||||||++|++++..+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 45688999999888888877653 335679999999999999999999987 7888888
Q ss_pred cchhhcc--ccccchHHHHHHHHHHHHhc-CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEE
Q 007255 356 SGAELYS--MYVGESEALLRNTFQRARLA-APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILV 432 (611)
Q Consensus 356 ~~~~~~~--~~~g~~~~~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 432 (611)
++..+.. .+.+.....+..++..+... .|.+|||||+|.+.+.+..... . ..+.+.|...++ ..++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~-~----~~~~~~l~~~~~----~~~~~i 155 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG-A----LDAGNILKPMLA----RGELRC 155 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT-S----CCTHHHHHHHHH----TTCSCE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc-c----hHHHHHHHHHHh----cCCeeE
Confidence 8877753 35566667788888777665 6789999999999755431111 1 223344444443 356889
Q ss_pred EEecCCCc-----ccchhccCCCCccceeecCCCC
Q 007255 433 LAATNRPH-----AIDAALMRPGRFDLVLYVPPPD 462 (611)
Q Consensus 433 I~~tn~~~-----~ld~al~r~gRf~~~i~~~~p~ 462 (611)
|++||.++ .+|+++.+ ||+ .+.++.|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 99999876 58999999 999 59999886
No 115
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=2.8e-14 Score=149.58 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=154.9
Q ss_pred ccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCC--CcceeCCCCCChHHHHHHHHHHh----CCcEEeecchhhc
Q 007255 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVR--GALLHGPPGCSKTTLAKAAAHAA----EASFFSLSGAELY 361 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~--~~Ll~Gp~G~GKT~la~ala~~~----~~~~~~~~~~~~~ 361 (611)
..++++|.+...+.+...+...+. + ..+. +++|+||||||||+++++++..+ +..++.+++....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 447899999998888887764211 1 2233 79999999999999999999998 5678888865432
Q ss_pred cc----------------cccc-hHHHHHHHHHHHHh-cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcC
Q 007255 362 SM----------------YVGE-SEALLRNTFQRARL-AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (611)
Q Consensus 362 ~~----------------~~g~-~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 423 (611)
.. ..+. .......+...... ..|.||+|||+|.+ ....+..|+..++.
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l--------------~~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL--------------APDILSTFIRLGQE 151 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS--------------CHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc--------------chHHHHHHHHHHHh
Confidence 20 0111 12223333333332 45789999999987 13566777777764
Q ss_pred CCC--CCCeEEEEecCCC---cccchhccCCCCccc-eeecCCCCHHHHHHHHHHHhcC---CCCCCcccHHHHHHhC--
Q 007255 424 LEQ--AKGILVLAATNRP---HAIDAALMRPGRFDL-VLYVPPPDLEARHEILRVHTRN---MKVGDDVDLRSIAEET-- 492 (611)
Q Consensus 424 ~~~--~~~~~vI~~tn~~---~~ld~al~r~gRf~~-~i~~~~p~~~~r~~il~~~~~~---~~~~~~~~~~~la~~~-- 492 (611)
... ..++.+|++||.+ +.+++.+.+ ||.. .+.|++++.++..++++..+.. ....++..++.+++.+
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGA 229 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSB
T ss_pred CCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Confidence 322 1578899999988 567788877 8875 8999999999999999876653 1223445678888888
Q ss_pred -------CCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCCC
Q 007255 493 -------ELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSLKPA 536 (611)
Q Consensus 493 -------~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~~~~ 536 (611)
.| ..+.+.++|+.+...+..+. ...++.+++..++......
T Consensus 230 ~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~--~~~i~~~~v~~~~~~~~~~ 277 (389)
T 1fnn_A 230 QTPLDTNRG-DARLAIDILYRSAYAAQQNG--RKHIAPEDVRKSSKEVLFG 277 (389)
T ss_dssp SSTTCTTSC-CHHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHSCC
T ss_pred cccCCCCCC-cHHHHHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHhhh
Confidence 45 67888899998887776543 3457888888887766544
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.60 E-value=7.8e-15 Score=147.30 Aligned_cols=167 Identities=12% Similarity=0.074 Sum_probs=118.4
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEE
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVI 84 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v 84 (611)
|..-+-|.|.++..+.|..++...+. -..+.+++|+||||||||++++++++++ ...++++
T Consensus 16 ~~~~~~L~~Re~E~~~i~~~L~~~i~---------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~I 86 (318)
T 3te6_A 16 LQKRELLKSQVEDFTRIFLPIYDSLM---------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHI 86 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEE
T ss_pred cCCccccCCHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEE
Confidence 33444477888888888887755332 2367899999999999999999999998 3467888
Q ss_pred cccccccc----------------cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHH
Q 007255 85 SPHSVHKA----------------HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFT 148 (611)
Q Consensus 85 ~~~~~~~~----------------~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~ 148 (611)
+|..+.+. ..+.....+...|..... ....++|++|||+|.+.. ..++..+++
T Consensus 87 Nc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~~---------q~~L~~l~~ 155 (318)
T 3te6_A 87 DALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPK--AKKRKTLILIQNPENLLS---------EKILQYFEK 155 (318)
T ss_dssp ETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSCC---------THHHHHHHH
T ss_pred eccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhh--ccCCceEEEEecHHHhhc---------chHHHHHHh
Confidence 87654321 123345566777765411 134578999999999971 145555555
Q ss_pred HHhcCCCCCCCCCcEEEEEeecCcc----cccHHhhccCCcc-eEEEccCCCHHHHHHHHHHhhcC
Q 007255 149 LMDSNKPSKTSVPHVVVVASTNRVD----AIDPALRRSGRFD-AEVEVTVPTAEERFEILKLYTKK 209 (611)
Q Consensus 149 ~l~~~~~~~~~~~~v~ii~ttn~~~----~l~~~l~~~~Rf~-~~i~~~~p~~~~r~~Il~~~~~~ 209 (611)
+... ...++.+|+.+|..+ .+++++++ ||. ..|.|++|+.++..+|++..+..
T Consensus 156 ~~~~------~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 156 WISS------KNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHC------SSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cccc------cCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 4432 123588999998865 35667777 876 57999999999999999988765
No 117
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=1.8e-14 Score=150.73 Aligned_cols=223 Identities=17% Similarity=0.178 Sum_probs=154.1
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh------CCcEEeecchh
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA------EASFFSLSGAE 359 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~------~~~~~~~~~~~ 359 (611)
....++++|.+...+.+.+.+...+. ...+.+++|+||||||||++++++++.+ +..++.+++..
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 34457899999999988887663221 1345689999999999999999999988 88899988754
Q ss_pred hccc----------------cccc-hHHHHHHHHHHHHhcC-CcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHh
Q 007255 360 LYSM----------------YVGE-SEALLRNTFQRARLAA-PSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEM 421 (611)
Q Consensus 360 ~~~~----------------~~g~-~~~~~~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l 421 (611)
.... ..+. .......++....... |.||+|||++.+.... ....+..|+..+
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~----------~~~~l~~l~~~~ 156 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY----------NDDILYKLSRIN 156 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS----------CSTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC----------cCHHHHHHhhch
Confidence 3211 1122 2333555555555443 8899999999885331 024567777777
Q ss_pred cCCCCCCCeEEEEecCCCc---ccchhccCCCCcc-ceeecCCCCHHHHHHHHHHHhcC-C--CCCCcccHHHHHHhCC-
Q 007255 422 DGLEQAKGILVLAATNRPH---AIDAALMRPGRFD-LVLYVPPPDLEARHEILRVHTRN-M--KVGDDVDLRSIAEETE- 493 (611)
Q Consensus 422 ~~~~~~~~~~vI~~tn~~~---~ld~al~r~gRf~-~~i~~~~p~~~~r~~il~~~~~~-~--~~~~~~~~~~la~~~~- 493 (611)
+.. ...++.+|++|+.++ .+++.+.+ ||. ..+.+++++.++..++++..+.. . ....+..+..++..+.
T Consensus 157 ~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (386)
T 2qby_A 157 SEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAR 233 (386)
T ss_dssp HSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHH
T ss_pred hhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 644 455788899999874 57788877 775 48999999999999999976542 1 1123334566777666
Q ss_pred --CCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Q 007255 494 --LFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSL 533 (611)
Q Consensus 494 --g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~ 533 (611)
| +.+.+.++|..+...+..+. ...++.+++..++...
T Consensus 234 ~~G-~~r~~~~ll~~a~~~a~~~~--~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 234 EHG-DARRALDLLRVSGEIAERMK--DTKVKEEYVYMAKEEI 272 (386)
T ss_dssp TTC-CHHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHHH
T ss_pred hcC-CHHHHHHHHHHHHHHHHhcC--CCccCHHHHHHHHHHH
Confidence 6 57777888888877665432 3467888887776554
No 118
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.60 E-value=1.3e-14 Score=172.42 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=97.1
Q ss_pred cccccccccccCCcHHHHHHHHHHHHhhhhC----------chHHHh------cC------------CCCCceEEEEcCC
Q 007255 11 HNEKWKAEEAIGGNRAAVEALRELITFPLLY----------SSQAQK------LG------------LKWPRGLLLYGPP 62 (611)
Q Consensus 11 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~~----------~~~~~~------~g------------~~~~~~iLl~Gp~ 62 (611)
..+.| +++.|++++|+.+.+.+..|+.+ ++.+.. .| .+..+.+++||||
T Consensus 1015 ~~~~~---~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~ 1091 (1706)
T 3cmw_A 1015 SGSST---GSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPE 1091 (1706)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECST
T ss_pred CCcee---eecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCC
Confidence 34555 89999999999999999988843 334444 22 3344569999999
Q ss_pred CCcHHHHHHHHHHHh---CCcEEEEcccccc------------cccccc----hHHHHHHHHHHHHhhhhcCCCeEEEEc
Q 007255 63 GTGKTSLVRAVVREC---GAHLTVISPHSVH------------KAHVGE----SEKALREAFSQASSHALSGKPSVVFID 123 (611)
Q Consensus 63 GtGKT~la~~la~~l---~~~~~~v~~~~~~------------~~~~~~----~~~~l~~~f~~~~~~~~~~~~~il~ID 123 (611)
|||||+++++++.+. +.+.+.++..... +.+.++ .++.++.+|..+.+. .|+++++|
T Consensus 1092 g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~----~~~~i~~d 1167 (1706)
T 3cmw_A 1092 SSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG----AVDVIVVD 1167 (1706)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT----CCSEEEES
T ss_pred CCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhc----CCeEEEeC
Confidence 999999999998766 4556666655433 334445 788888888777654 39999999
Q ss_pred cccccCCCCC-----C--CchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCc
Q 007255 124 EIDALCPRRD-----H--RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRV 172 (611)
Q Consensus 124 eid~l~~~~~-----~--~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~ 172 (611)
+++.|++.++ + ......+++++++.-++...... +|++| +||+.
T Consensus 1168 ~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~----~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1168 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS----NTLLI-FINQI 1218 (1706)
T ss_dssp CGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHT----TCEEE-EEECE
T ss_pred chHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccC----CeEEE-Eeccc
Confidence 9999999732 1 11234456777777776522211 35666 56663
No 119
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.60 E-value=5.6e-15 Score=158.28 Aligned_cols=184 Identities=19% Similarity=0.332 Sum_probs=126.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~ 85 (611)
..+++++|.++.++.+.+.+.. ...+++||+||||||||++++++|+.+ +.+++.++
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4578999999999999887643 245799999999999999999999997 67788888
Q ss_pred ccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 007255 86 PHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVV 165 (611)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~i 165 (611)
++ ..+.|.....++.+|..+... .++||||| .. ....+.|+..++. +.+.+
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~----~~~iLfiD------~~--------~~a~~~L~~~L~~--------g~v~v 294 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQA----GNIILFID------AA--------IDASNILKPSLAR--------GELQC 294 (468)
T ss_dssp ------------CTTHHHHHHHHHTC----CCCEEEEC------C----------------CCCTTS--------SSCEE
T ss_pred CC---ccccchHHHHHHHHHHHHHhc----CCeEEEEe------Cc--------hhHHHHHHHhhcC--------CCEEE
Confidence 76 455666666778888877643 58899999 10 1233444444432 25789
Q ss_pred EEeecCcc-----cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCC----CC-CcccHHHHHHhccCCccc----
Q 007255 166 VASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVP----LD-ANVDLEAIATSCNGYVGA---- 231 (611)
Q Consensus 166 i~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~----~~-~~~~~~~la~~~~g~~~~---- 231 (611)
|++||..+ .+++++.+ ||. .+.|+.|+.+++..|++.+...+. .. .+..+..++..+.+|...
T Consensus 295 I~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp 371 (468)
T 3pxg_A 295 IGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLP 371 (468)
T ss_dssp EEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred EecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCC
Confidence 99999876 68999999 997 699999999999999998876632 21 223366677766666543
Q ss_pred -cHHHHHHHHHHHH
Q 007255 232 -DLEALCREATMSA 244 (611)
Q Consensus 232 -dl~~l~~~a~~~a 244 (611)
....+++++....
T Consensus 372 ~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 372 DKAIDLIDEAGSKV 385 (468)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 5566666666443
No 120
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.60 E-value=2.5e-14 Score=146.67 Aligned_cols=164 Identities=18% Similarity=0.223 Sum_probs=112.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccc--ccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH--KAH 93 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~--~~~ 93 (611)
..+++++|++++++.+...+.. +.++||+||||||||++++++++.++.+++.++++... ...
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 3467899999999988777643 25999999999999999999999999999888764211 000
Q ss_pred ccchH-HHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCCCcEEEEE
Q 007255 94 VGESE-KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSVPHVVVVA 167 (611)
Q Consensus 94 ~~~~~-~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~~~v~ii~ 167 (611)
.+... ......|. . ....-..+||||||+|.+.+ ..+..|+..++..... ...+.++++|+
T Consensus 89 ~g~~~~~~~~~~~~-~--~~g~l~~~vl~iDEi~~~~~----------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via 155 (331)
T 2r44_A 89 IGTMIYNQHKGNFE-V--KKGPVFSNFILADEVNRSPA----------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLA 155 (331)
T ss_dssp HEEEEEETTTTEEE-E--EECTTCSSEEEEETGGGSCH----------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred CCceeecCCCCceE-e--ccCcccccEEEEEccccCCH----------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence 00000 00000000 0 00000136999999998744 5677888888763210 11233578889
Q ss_pred eecCcc-----cccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcC
Q 007255 168 STNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK 209 (611)
Q Consensus 168 ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~ 209 (611)
|+|+.+ .+++++.+ ||...+.+++|+.+++.+|++.....
T Consensus 156 t~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 156 TQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred ecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 998654 38999998 99888999999999999999988764
No 121
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.60 E-value=1.2e-14 Score=148.48 Aligned_cols=195 Identities=21% Similarity=0.305 Sum_probs=127.2
Q ss_pred ccccccC---CcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccccc
Q 007255 16 KAEEAIG---GNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSV 89 (611)
Q Consensus 16 ~~~~~i~---G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~ 89 (611)
.+|++++ ++......+..++..+ ...+.+++|+||||||||++++++++.+ +.+++.+++.++
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 4677886 4555555555554332 1245799999999999999999999998 889999998776
Q ss_pred ccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 007255 90 HKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST 169 (611)
Q Consensus 90 ~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~tt 169 (611)
.....+.........|.... .++.+|||||+|.+.... ..+..++..++..... +..++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-----~~~~vL~iDEi~~l~~~~--------~~~~~l~~~l~~~~~~----~~~iii~~~ 139 (324)
T 1l8q_A 77 AQAMVEHLKKGTINEFRNMY-----KSVDLLLLDDVQFLSGKE--------RTQIEFFHIFNTLYLL----EKQIILASD 139 (324)
T ss_dssp HHHHHHHHHHTCHHHHHHHH-----HTCSEEEEECGGGGTTCH--------HHHHHHHHHHHHHHHT----TCEEEEEES
T ss_pred HHHHHHHHHcCcHHHHHHHh-----cCCCEEEEcCcccccCCh--------HHHHHHHHHHHHHHHC----CCeEEEEec
Confidence 44332221111111222221 137799999999986521 2334444444332111 135666666
Q ss_pred cCcc---cccHHhhccCCcc--eEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCCccccHHHHHHHHHHH
Q 007255 170 NRVD---AIDPALRRSGRFD--AEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEALCREATMS 243 (611)
Q Consensus 170 n~~~---~l~~~l~~~~Rf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~~~~dl~~l~~~a~~~ 243 (611)
+++. .+++++.+ ||. ..+.+++ +.+++.+|++..+......- +..++.++..+ | +.+++.+++..+...
T Consensus 140 ~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 140 RHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp SCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred CChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 6666 68899998 875 6799999 99999999999887544332 23477888887 4 456677777665543
No 122
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.59 E-value=7.7e-15 Score=151.65 Aligned_cols=222 Identities=26% Similarity=0.289 Sum_probs=132.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE----Ecccccc-
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV----ISPHSVH- 90 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~----v~~~~~~- 90 (611)
..|++++|++.+++.+......+ .+.++||+||||||||++++++++.++..... +++....
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~-------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 87 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEM 87 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGG
T ss_pred CCchhccChHHHHHHHHHHhhCC-------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccccc
Confidence 46789999999877654433211 23579999999999999999999998632110 1111110
Q ss_pred --------------------cccccchHHHH------HHHHHHHHhhh-----hcCCCeEEEEccccccCCCCCCCchhh
Q 007255 91 --------------------KAHVGESEKAL------REAFSQASSHA-----LSGKPSVVFIDEIDALCPRRDHRREQD 139 (611)
Q Consensus 91 --------------------~~~~~~~~~~l------~~~f~~~~~~~-----~~~~~~il~IDeid~l~~~~~~~~~~~ 139 (611)
....+.+...+ ...+....... ....++||||||+|.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~--------- 158 (350)
T 1g8p_A 88 IPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED--------- 158 (350)
T ss_dssp SCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH---------
T ss_pred ccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH---------
Confidence 00011111111 11222211100 012378999999998854
Q ss_pred HHHHHHHHHHHhcCC----CCC---CCCCcEEEEEeecCcc-cccHHhhccCCcceEEEccCC-CHHHHHHHHHHhhc--
Q 007255 140 VRIASQLFTLMDSNK----PSK---TSVPHVVVVASTNRVD-AIDPALRRSGRFDAEVEVTVP-TAEERFEILKLYTK-- 208 (611)
Q Consensus 140 ~~~~~~ll~~l~~~~----~~~---~~~~~v~ii~ttn~~~-~l~~~l~~~~Rf~~~i~~~~p-~~~~r~~Il~~~~~-- 208 (611)
..+..|+..++... ... ..+.++++|+++|+.+ .+++++.+ ||...+.+++| +.+++.+|++....
T Consensus 159 -~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~~~ 235 (350)
T 1g8p_A 159 -HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDTYD 235 (350)
T ss_dssp -HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHhcc
Confidence 55778888887531 111 0123689999999854 89999999 99888999999 67777788865211
Q ss_pred -----------------------------CCCCCCcccHHHHHHhccCC---ccccHHHHHHHHHHHHhhhccccccccc
Q 007255 209 -----------------------------KVPLDANVDLEAIATSCNGY---VGADLEALCREATMSAVKRSSDANECAG 256 (611)
Q Consensus 209 -----------------------------~~~~~~~~~~~~la~~~~g~---~~~dl~~l~~~a~~~a~~r~~~~~~~~~ 256 (611)
...++ +..++.++..+.+. +.+.+.++++.|...+.....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~------- 307 (350)
T 1g8p_A 236 ADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAALCIALGSDGLRGELTLLRSARALAALEGA------- 307 (350)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC-------
T ss_pred cCchhhccccccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC-------
Confidence 11111 22345555554443 347777887777665543322
Q ss_pred ccchhHHHHHHHHhc
Q 007255 257 VLSVTMEDWRHARSV 271 (611)
Q Consensus 257 ~~~v~~ed~~~a~~~ 271 (611)
..++.+|+..+...
T Consensus 308 -~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 308 -TAVGRDHLKRVATM 321 (350)
T ss_dssp -SBCCHHHHHHHHHH
T ss_pred -CcCCHHHHHHHHHH
Confidence 13667777666554
No 123
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=7.4e-15 Score=152.06 Aligned_cols=192 Identities=14% Similarity=0.153 Sum_probs=133.8
Q ss_pred cCCCcccccccchhHHHHHHHHHh-hccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCC-----------
Q 007255 283 EIPKVTWEDIGGLRDLKKKLQQAV-EWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA----------- 350 (611)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~-~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~----------- 350 (611)
.+.+.+|++++|++.+.+.+...+ .. ...++ ++|+||+|+|||++++++|.++..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSDQP------------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTTCT------------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHhhC------------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 445678999999999999888876 31 13344 999999999999999999996521
Q ss_pred ------------------cEEeecchhhccccccchHHHHHHHHHHHH--------------hcCCcEEEEccccccccc
Q 007255 351 ------------------SFFSLSGAELYSMYVGESEALLRNTFQRAR--------------LAAPSIIFFDEADVVGAK 398 (611)
Q Consensus 351 ------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~--------------~~~p~il~iDeid~l~~~ 398 (611)
.++.+++++.. ......++..++.+. ...|.|++|||++.+-
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~-- 147 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT-- 147 (354)
T ss_dssp ------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC--
T ss_pred eecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC--
Confidence 12222222110 001112344443332 2357799999999761
Q ss_pred CCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCC
Q 007255 399 RGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMK 478 (611)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~ 478 (611)
....+.|++.|+. ...++.+|++|+.++.+.+++.+ |+ ..+.|++|+.+++..+++..++..+
T Consensus 148 ------------~~~~~~L~~~le~--~~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 148 ------------KDAQAALRRTMEK--YSKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp ------------HHHHHHHHHHHHH--STTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHHHh--hcCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcC
Confidence 3456778888874 34568888899999999999998 88 5899999999999999997765443
Q ss_pred CC-C-cccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007255 479 VG-D-DVDLRSIAEETELFTGAELEGLCREAGIVA 511 (611)
Q Consensus 479 ~~-~-~~~~~~la~~~~g~s~~~i~~~~~~a~~~a 511 (611)
+. + +..++.+++.+.| +.+++.++++.+....
T Consensus 211 ~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 211 IQLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp CEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred CCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 32 3 5567889998877 6777777777665543
No 124
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.58 E-value=1.4e-13 Score=141.08 Aligned_cols=217 Identities=21% Similarity=0.258 Sum_probs=145.6
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccc
Q 007255 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (611)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~ 94 (611)
.+.+++++|++.+++.+...+..... .+ .++.+++|+|||||||||+++++|..++.++...+...+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKM-------RG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHH-------HT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 36789999999999988877643211 01 34578999999999999999999999998877666543321
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----C-------CCCCc
Q 007255 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----K-------TSVPH 162 (611)
Q Consensus 95 ~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~-------~~~~~ 162 (611)
...+...+.. ..++.|+||||+|.+.+ .....++..++..... . .....
T Consensus 90 ---~~~l~~~~~~------~~~~~v~~iDE~~~l~~----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 90 ---QGDMAAILTS------LERGDVLFIDEIHRLNK----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp ---HHHHHHHHHH------CCTTCEEEEETGGGCCH----------HHHHHHHHHHHTSCCCC---------------CC
T ss_pred ---HHHHHHHHHH------ccCCCEEEEcchhhcCH----------HHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 1222222221 12367999999998854 2344455555433210 0 01134
Q ss_pred EEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCCccccHHHHHHHHH
Q 007255 163 VVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEALCREAT 241 (611)
Q Consensus 163 v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~~~~dl~~l~~~a~ 241 (611)
+.++++++.+..+++.+++ ||...+.+++|+.+++.+|++.......... +..+..++..+.|.. +.+..+++.+.
T Consensus 151 ~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~-R~a~~ll~~~~ 227 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP-RIAIRLTKRVR 227 (334)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH-HHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh-HHHHHHHHHHH
Confidence 6778899999999999999 9987899999999999999998876554432 234778888877754 66777777665
Q ss_pred HHHhhhcccccccccccchhHHHHHHHHhcc
Q 007255 242 MSAVKRSSDANECAGVLSVTMEDWRHARSVV 272 (611)
Q Consensus 242 ~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i 272 (611)
..+..... ..++.++...+....
T Consensus 228 ~~a~~~~~--------~~It~~~v~~al~~~ 250 (334)
T 1in4_A 228 DMLTVVKA--------DRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHTC--------SSBCHHHHHHHHHHH
T ss_pred HHHHHcCC--------CCcCHHHHHHHHHHh
Confidence 54433211 135666666665543
No 125
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.57 E-value=2.1e-14 Score=152.43 Aligned_cols=191 Identities=17% Similarity=0.212 Sum_probs=125.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
+++++|+||||||||++++++++.+ +..++.+++..+...............|.... ..++.||||||+|.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vL~IDEi~~ 205 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKY----RKKVDILLIDDVQF 205 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHH----TTTCSEEEEECGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHh----cCCCCEEEEeCccc
Confidence 5799999999999999999999988 78888888876543222111110011122111 11478999999999
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccc---ccHHhhccCCcc--eEEEccCCCHHHHHHH
Q 007255 128 LCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA---IDPALRRSGRFD--AEVEVTVPTAEERFEI 202 (611)
Q Consensus 128 l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~---l~~~l~~~~Rf~--~~i~~~~p~~~~r~~I 202 (611)
+.... ..+..++..++..... +..+++++.+++.. +++++.+ ||. ..+.+++|+.+++..|
T Consensus 206 l~~~~--------~~q~~l~~~l~~l~~~----~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 206 LIGKT--------GVQTELFHTFNELHDS----GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp GSSCH--------HHHHHHHHHHHHHHTT----TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHH
T ss_pred ccCCh--------HHHHHHHHHHHHHHHC----CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHH
Confidence 86531 2344555555432211 13556666555654 7899998 775 6789999999999999
Q ss_pred HHHhhcCCC--CCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhcc
Q 007255 203 LKLYTKKVP--LDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVV 272 (611)
Q Consensus 203 l~~~~~~~~--~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i 272 (611)
++..+...+ ++.+ .+..++..+.| +.+++.++++.+...+.... ..++.+++..+....
T Consensus 272 L~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~---------~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 272 ARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYKETTG---------KEVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSS---------SCCCHHHHHHHTSTT
T ss_pred HHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC---------CCCCHHHHHHHHHHH
Confidence 998876433 3333 47788887765 67788888887776554211 136777777765544
No 126
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=7.8e-14 Score=142.50 Aligned_cols=175 Identities=22% Similarity=0.278 Sum_probs=125.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEEcccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-----HLTVISPHSVH 90 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~-----~~~~v~~~~~~ 90 (611)
..+++++|++++++.|..++... ...++||+||||||||++++++++.+.. .++.+++++..
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER 88 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH
T ss_pred CCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC
Confidence 55899999999999999887541 2346999999999999999999998742 36677665432
Q ss_pred cccccchHHHHHHHHHHH-Hhhhhc-CCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 007255 91 KAHVGESEKALREAFSQA-SSHALS-GKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS 168 (611)
Q Consensus 91 ~~~~~~~~~~l~~~f~~~-~~~~~~-~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~t 168 (611)
.. ..++..+... ...... +++.|++|||+|.+.+ ..+..|+..++... .++.+|++
T Consensus 89 ~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~L~~~le~~~------~~~~~i~~ 146 (327)
T 1iqp_A 89 GI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ----------DAQQALRRTMEMFS------SNVRFILS 146 (327)
T ss_dssp HH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH----------HHHHHHHHHHHHTT------TTEEEEEE
T ss_pred ch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH----------HHHHHHHHHHHhcC------CCCeEEEE
Confidence 10 1111111111 111112 5688999999998854 45677888887632 25778888
Q ss_pred ecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCC
Q 007255 169 TNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGY 228 (611)
Q Consensus 169 tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~ 228 (611)
+|.++.+.+.+.+ |+. .+.|++|+.++..++++..+...+.. .+..++.++..+.|.
T Consensus 147 ~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~ 204 (327)
T 1iqp_A 147 CNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGD 204 (327)
T ss_dssp ESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTC
T ss_pred eCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCC
Confidence 9999999999998 886 89999999999999999887765543 223467777776553
No 127
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=4.5e-14 Score=145.33 Aligned_cols=209 Identities=16% Similarity=0.166 Sum_probs=139.6
Q ss_pred cccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCC-----cEEee
Q 007255 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA-----SFFSL 355 (611)
Q Consensus 281 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~-----~~~~~ 355 (611)
...+.+.+|++++|++.+.+.|...+.. | ..++ ++|+||||||||++|+++|..+.. .+..+
T Consensus 16 ~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 82 (340)
T 1sxj_C 16 VEKYRPETLDEVYGQNEVITTVRKFVDE-----------G-KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL 82 (340)
T ss_dssp HHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEE
Confidence 3345667899999999999999888763 2 2333 999999999999999999998743 35666
Q ss_pred cchhhccccccchHHHHHHHHHHHHh------cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCC
Q 007255 356 SGAELYSMYVGESEALLRNTFQRARL------AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKG 429 (611)
Q Consensus 356 ~~~~~~~~~~g~~~~~~~~~~~~a~~------~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 429 (611)
++++.. | ...++........ ..+.|++|||+|.+. ....+.|++.++ .+...
T Consensus 83 ~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~--------------~~~~~~L~~~le--~~~~~ 140 (340)
T 1sxj_C 83 NASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT--------------NAAQNALRRVIE--RYTKN 140 (340)
T ss_dssp CTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC--------------HHHHHHHHHHHH--HTTTT
T ss_pred cCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHh--cCCCC
Confidence 655421 1 2233333333221 135799999999872 345678888887 45567
Q ss_pred eEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHH
Q 007255 430 ILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAG 508 (611)
Q Consensus 430 ~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~ 508 (611)
+.+|++||.++.+.+++.+ |+. .+.|+.++.++..+++...++...+. ++..+..++..+.| +.+.+.++++.+.
T Consensus 141 ~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~ 216 (340)
T 1sxj_C 141 TRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCK 216 (340)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTT
T ss_pred eEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7888899999999999998 887 78899999999999888777433322 23446777777666 4444444443332
Q ss_pred HHHHHhhcccccccHHHHHHHH
Q 007255 509 IVALREDISATAVRNRHFQTVK 530 (611)
Q Consensus 509 ~~a~~~~~~~~~i~~~~~~~~l 530 (611)
..+.. -....++.+++..++
T Consensus 217 ~~~~~--~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 217 ATLDN--PDEDEISDDVIYECC 236 (340)
T ss_dssp TTTCS--SSCCCBCHHHHHHHT
T ss_pred HhcCC--cccccccHHHHHHHh
Confidence 11110 001246666665554
No 128
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.56 E-value=1.2e-14 Score=135.56 Aligned_cols=152 Identities=21% Similarity=0.345 Sum_probs=107.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~ 85 (611)
..+++++|.+..++.+.+.+.. ..+.+++|+||||||||++++++++.+ +..++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred cccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 4578999999999988887632 245789999999999999999999987 67788887
Q ss_pred cccccc--ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcE
Q 007255 86 PHSVHK--AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (611)
Q Consensus 86 ~~~~~~--~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v 163 (611)
+..+.. .+.+.....+..++...... .++.+|+|||+|.+.+..... .....+...+...++. .++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vl~iDe~~~l~~~~~~~-~~~~~~~~~l~~~~~~--------~~~ 153 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDA---EGQVVMFIDEIHTVVGAGAVA-EGALDAGNILKPMLAR--------GEL 153 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHT---TTSEEEEETTGGGGSSSSSSC-TTSCCTHHHHHHHHHT--------TCS
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhc---CCceEEEEeCHHHhccccccc-ccchHHHHHHHHHHhc--------CCe
Confidence 766542 23334444566666555432 357899999999997543211 1111334455555553 146
Q ss_pred EEEEeecCcc-----cccHHhhccCCcceEEEccCCC
Q 007255 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPT 195 (611)
Q Consensus 164 ~ii~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~ 195 (611)
.+|+++|.+. .+++++.+ ||. .+.+++|+
T Consensus 154 ~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 154 RCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp CEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred eEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 7888888765 58999999 997 59999886
No 129
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=6.7e-14 Score=142.73 Aligned_cols=178 Identities=20% Similarity=0.271 Sum_probs=127.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEcccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVH 90 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~~~ 90 (611)
..+++++|++..++.|.+++.. + .. .+++|+||||+|||++++++++.+ +..++.+++++..
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKD-----------G-NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR 84 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHS-----------C-CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred CCHHHHHCCHHHHHHHHHHHHc-----------C-CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc
Confidence 5678999999999999988743 1 22 349999999999999999999986 3457777765431
Q ss_pred cccccchHHHHHHHHHHHHh--hhh-cCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 007255 91 KAHVGESEKALREAFSQASS--HAL-SGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVA 167 (611)
Q Consensus 91 ~~~~~~~~~~l~~~f~~~~~--~~~-~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ 167 (611)
....++..+..... ... .+++.|++|||+|.+.. ..+..|+..++.. ..++.+|.
T Consensus 85 ------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~----------~~~~~L~~~le~~------~~~~~~il 142 (323)
T 1sxj_B 85 ------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA----------GAQQALRRTMELY------SNSTRFAF 142 (323)
T ss_dssp ------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH----------HHHHTTHHHHHHT------TTTEEEEE
T ss_pred ------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH----------HHHHHHHHHHhcc------CCCceEEE
Confidence 12334444444331 111 23478999999998854 3456677787763 23577888
Q ss_pred eecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccc
Q 007255 168 STNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGA 231 (611)
Q Consensus 168 ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~ 231 (611)
+||.+..+.+.+.+ |+. .+.|++|+.+++.++++..+...+.. .+..+..++..+.|....
T Consensus 143 ~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~ 204 (323)
T 1sxj_B 143 ACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQ 204 (323)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHH
T ss_pred EeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 88999999999998 875 89999999999999999877543332 223467778877665433
No 130
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.56 E-value=1.7e-13 Score=142.79 Aligned_cols=188 Identities=18% Similarity=0.233 Sum_probs=134.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~--------------- 80 (611)
..+++++|+++.++.|...+.. -..+..+||+||+|||||++++++++.++..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 5678999999999999988743 1234678999999999999999999988642
Q ss_pred ---------EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHh
Q 007255 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (611)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 151 (611)
++.++... ......++.++..+......+++.|++|||+|.+.. ..++.|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~Ll~~le 144 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR----------HSFNALLKTLE 144 (373)
T ss_dssp HHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH----------HHHHHHHHHHH
T ss_pred HHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH----------HHHHHHHHHHh
Confidence 12222211 011123455555554444455678999999998843 45677888887
Q ss_pred cCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCCcc
Q 007255 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVG 230 (611)
Q Consensus 152 ~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~~~ 230 (611)
.. +.++++|++|+.+..+.+.+.+ |+ ..+.+++|+.++..++++.++...+... +..+..++..+.| +.
T Consensus 145 ~~------~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~ 214 (373)
T 1jr3_A 145 EP------PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 214 (373)
T ss_dssp SC------CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CH
T ss_pred cC------CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CH
Confidence 52 3357888888888899999988 87 5899999999999999998876544332 2236778888766 45
Q ss_pred ccHHHHHHHHH
Q 007255 231 ADLEALCREAT 241 (611)
Q Consensus 231 ~dl~~l~~~a~ 241 (611)
+.+.++++.+.
T Consensus 215 r~~~~~l~~~~ 225 (373)
T 1jr3_A 215 RDALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55666666554
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=9.1e-14 Score=145.46 Aligned_cols=194 Identities=20% Similarity=0.232 Sum_probs=128.2
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----------CCcEEEEccc
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-----------GAHLTVISPH 87 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l-----------~~~~~~v~~~ 87 (611)
++++|.++.++.|.+++..... -..+.+++|+||||||||++++++++.+ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 7899999999999988754322 1345799999999999999999999988 8889999876
Q ss_pred ccc-ccc-----------------ccch-HHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHH
Q 007255 88 SVH-KAH-----------------VGES-EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFT 148 (611)
Q Consensus 88 ~~~-~~~-----------------~~~~-~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~ 148 (611)
... ... .+.. ...+..++... ...+.||+|||+|.+..... ... .+..
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~vlilDEi~~l~~~~~------~~~--~l~~ 157 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT-----RNIRAIIYLDEVDTLVKRRG------GDI--VLYQ 157 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH-----SSSCEEEEEETTHHHHHSTT------SHH--HHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh-----ccCCCEEEEECHHHhccCCC------Cce--eHHH
Confidence 543 100 0111 11122222211 12234999999998864321 022 0222
Q ss_pred HHhcCCCCCCCCCcEEEEEeecCc---ccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcC-C---CCCCcccHHHH
Q 007255 149 LMDSNKPSKTSVPHVVVVASTNRV---DAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK-V---PLDANVDLEAI 221 (611)
Q Consensus 149 ~l~~~~~~~~~~~~v~ii~ttn~~---~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~-~---~~~~~~~~~~l 221 (611)
++... .++.+|++||.. +.+++++.+ ||...+.|++|+.+++.+|++.++.. . .++ +..++.+
T Consensus 158 l~~~~-------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i 227 (384)
T 2qby_B 158 LLRSD-------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYI 227 (384)
T ss_dssp HHTSS-------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHH
T ss_pred HhcCC-------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHH
Confidence 33221 358899999886 678999988 88779999999999999999988753 1 222 2346777
Q ss_pred HHhccCCc--cccHHHHHHHHHHHH
Q 007255 222 ATSCNGYV--GADLEALCREATMSA 244 (611)
Q Consensus 222 a~~~~g~~--~~dl~~l~~~a~~~a 244 (611)
+..+.+.. .+.+.++++.+...+
T Consensus 228 ~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 228 AAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHh
Confidence 77776322 234455666665444
No 132
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.55 E-value=1.2e-13 Score=144.53 Aligned_cols=221 Identities=22% Similarity=0.201 Sum_probs=140.6
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEcccc
Q 007255 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---------GAHLTVISPHS 88 (611)
Q Consensus 18 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---------~~~~~~v~~~~ 88 (611)
.++++|.++.++.+..++...+. ...+.+++|+||||||||++++.+++.+ +..++.+++..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 37899999999999887643211 1346799999999999999999999988 77888888765
Q ss_pred ccccc----------------ccchHHH-HHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHh
Q 007255 89 VHKAH----------------VGESEKA-LREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (611)
Q Consensus 89 ~~~~~----------------~~~~~~~-l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 151 (611)
..... .+..... +..++.... ..++++||+|||+|.+.... .....+..++..++
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~~-----~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKRP-----GGQDLLYRITRINQ 160 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHST-----THHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhcccC-----CCChHHHhHhhchh
Confidence 32210 1111222 223332221 13457899999999885431 01233344444433
Q ss_pred cCCCCCCCCCcEEEEEeecCc---ccccHHhhccCCcce-EEEccCCCHHHHHHHHHHhhcC--CCC-CCcccHHHHHHh
Q 007255 152 SNKPSKTSVPHVVVVASTNRV---DAIDPALRRSGRFDA-EVEVTVPTAEERFEILKLYTKK--VPL-DANVDLEAIATS 224 (611)
Q Consensus 152 ~~~~~~~~~~~v~ii~ttn~~---~~l~~~l~~~~Rf~~-~i~~~~p~~~~r~~Il~~~~~~--~~~-~~~~~~~~la~~ 224 (611)
.... ..++.+|++||.+ +.+++.+.+ ||.. .+.|++|+.+++.+|++..+.. ... -.+..++.++..
T Consensus 161 ~~~~----~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~ 234 (387)
T 2v1u_A 161 ELGD----RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAAL 234 (387)
T ss_dssp CC---------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHH
T ss_pred hcCC----CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Confidence 2210 2357888999887 688999988 8864 8999999999999999988753 111 122246677777
Q ss_pred cc---CCccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHh
Q 007255 225 CN---GYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARS 270 (611)
Q Consensus 225 ~~---g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~ 270 (611)
+. |. .+.+.++++.+...+.... ...++.+++..+..
T Consensus 235 ~~~~~G~-~r~~~~~l~~a~~~a~~~~--------~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 235 AAREHGD-ARRALDLLRVAGEIAERRR--------EERVRREHVYSARA 274 (387)
T ss_dssp HHSSSCC-HHHHHHHHHHHHHHHHHTT--------CSCBCHHHHHHHHH
T ss_pred HHHhccC-HHHHHHHHHHHHHHHHHcC--------CCCcCHHHHHHHHH
Confidence 66 43 4556677777765443321 12356666665544
No 133
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=3.1e-14 Score=154.59 Aligned_cols=194 Identities=19% Similarity=0.291 Sum_probs=122.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhC-chHHHhcCC---CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLY-SSQAQKLGL---KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK 91 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~-~~~~~~~g~---~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~ 91 (611)
..+++++|++.+++.|.+++...... +..+...|. ..++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 115 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 67899999999999999998652111 111112222 25689999999999999999999999999999999987643
Q ss_pred ccccchH-------HHHHHHHHHHHh-hhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcE
Q 007255 92 AHVGESE-------KALREAFSQASS-HALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (611)
Q Consensus 92 ~~~~~~~-------~~l~~~f~~~~~-~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v 163 (611)
....... ..+..+|..+.. .....+++||||||+|.+..... ..+..|+.+++... ..+
T Consensus 116 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-------~~l~~L~~~l~~~~------~~i 182 (516)
T 1sxj_A 116 KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-------GGVGQLAQFCRKTS------TPL 182 (516)
T ss_dssp HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-------THHHHHHHHHHHCS------SCE
T ss_pred HHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-------HHHHHHHHHHHhcC------CCE
Confidence 2210000 001111111100 01124688999999999876421 22456666766521 134
Q ss_pred EEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCC--CCCCcccHHHHHHhccC
Q 007255 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV--PLDANVDLEAIATSCNG 227 (611)
Q Consensus 164 ~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~--~~~~~~~~~~la~~~~g 227 (611)
++++++.....+. .+++ | ...+.|++|+.+++.+++...+... .++.+ .+..++..+.|
T Consensus 183 Ili~~~~~~~~l~-~l~~--r-~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G 243 (516)
T 1sxj_A 183 ILICNERNLPKMR-PFDR--V-CLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG 243 (516)
T ss_dssp EEEESCTTSSTTG-GGTT--T-SEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT
T ss_pred EEEEcCCCCccch-hhHh--c-eEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 5554433333443 3543 4 4589999999999999998876543 33333 47888887755
No 134
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.54 E-value=5.6e-14 Score=143.04 Aligned_cols=176 Identities=20% Similarity=0.255 Sum_probs=123.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEcccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVH 90 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~~~ 90 (611)
..+++++|++.+++.|.+.+.. ....++||+||||||||++++++++.+ +..++.+++++..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 80 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTT
T ss_pred CCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcccc
Confidence 5678999999999988876532 122359999999999999999999987 3356777776542
Q ss_pred cccccchHHHHHHHHHHHHhhhh-cCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 007255 91 KAHVGESEKALREAFSQASSHAL-SGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST 169 (611)
Q Consensus 91 ~~~~~~~~~~l~~~f~~~~~~~~-~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~tt 169 (611)
. .......+.... ..... .+++.|++|||+|.+.. ..+..|+..++.. +.++.+|++|
T Consensus 81 ~--~~~~~~~~~~~~---~~~~~~~~~~~vliiDe~~~l~~----------~~~~~L~~~le~~------~~~~~~i~~~ 139 (319)
T 2chq_A 81 G--IDVVRHKIKEFA---RTAPIGGAPFKIIFLDEADALTA----------DAQAALRRTMEMY------SKSCRFILSC 139 (319)
T ss_dssp C--TTTSSHHHHHHH---HSCCSSSCCCEEEEEETGGGSCH----------HHHHTTGGGTSSS------SSSEEEEEEE
T ss_pred C--hHHHHHHHHHHH---hcCCCCCCCceEEEEeCCCcCCH----------HHHHHHHHHHHhc------CCCCeEEEEe
Confidence 2 111112222211 11111 24578999999998853 3455666666542 2357888999
Q ss_pred cCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCC
Q 007255 170 NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGY 228 (611)
Q Consensus 170 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~ 228 (611)
|.+..+.+++.+ |+. .+.|++|+.+++.+++...+...+... +..+..++..+.|.
T Consensus 140 ~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~ 196 (319)
T 2chq_A 140 NYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGD 196 (319)
T ss_dssp SCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTC
T ss_pred CChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 999999999998 885 899999999999999998887655432 23466777666553
No 135
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.54 E-value=1.1e-13 Score=134.72 Aligned_cols=203 Identities=13% Similarity=0.115 Sum_probs=130.5
Q ss_pred ccccccCC---cHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEccccc
Q 007255 16 KAEEAIGG---NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG---AHLTVISPHSV 89 (611)
Q Consensus 16 ~~~~~i~G---~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~---~~~~~v~~~~~ 89 (611)
..|++++| ++.+++.+..++.. ..+.+++|+||||||||++++++++.+. ..++.+++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 46778886 34666666665432 1457999999999999999999998874 67788887776
Q ss_pred ccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcE-EEEEe
Q 007255 90 HKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV-VVVAS 168 (611)
Q Consensus 90 ~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v-~ii~t 168 (611)
...... .+.. ..++.+|+|||+|.+.... ..+..++..++...... .+ +++++
T Consensus 92 ~~~~~~--------~~~~------~~~~~vliiDe~~~~~~~~--------~~~~~l~~~l~~~~~~~----~~~ii~~~ 145 (242)
T 3bos_A 92 ASISTA--------LLEG------LEQFDLICIDDVDAVAGHP--------LWEEAIFDLYNRVAEQK----RGSLIVSA 145 (242)
T ss_dssp GGSCGG--------GGTT------GGGSSEEEEETGGGGTTCH--------HHHHHHHHHHHHHHHHC----SCEEEEEE
T ss_pred HHHHHH--------HHHh------ccCCCEEEEeccccccCCH--------HHHHHHHHHHHHHHHcC----CCeEEEEc
Confidence 543211 1110 1247799999999885421 22344444444321111 23 44444
Q ss_pred ecCcc---cccHHhhccCCcc--eEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccCCccccHHHHHHHHHH
Q 007255 169 TNRVD---AIDPALRRSGRFD--AEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEALCREATM 242 (611)
Q Consensus 169 tn~~~---~l~~~l~~~~Rf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~~~~dl~~l~~~a~~ 242 (611)
+..+. .+++++.+ ||. ..+.+++|+.+++.++++.++...+... +..++.++..+.| +.+.+.++++.+..
T Consensus 146 ~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 146 SASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDK 222 (242)
T ss_dssp SSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 44443 45688888 774 7899999999999999999886544332 2346777777765 56777777777766
Q ss_pred HHhhhcccccccccccchhHHHHHHHH
Q 007255 243 SAVKRSSDANECAGVLSVTMEDWRHAR 269 (611)
Q Consensus 243 ~a~~r~~~~~~~~~~~~v~~ed~~~a~ 269 (611)
.+.... ..++.+++..+.
T Consensus 223 ~a~~~~---------~~It~~~v~~~l 240 (242)
T 3bos_A 223 ASMVHQ---------RKLTIPFVKEML 240 (242)
T ss_dssp HHHHHT---------CCCCHHHHHHHH
T ss_pred HHHHhC---------CCCcHHHHHHHh
Confidence 553321 136666666543
No 136
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.54 E-value=7.9e-14 Score=142.90 Aligned_cols=174 Identities=16% Similarity=0.157 Sum_probs=126.2
Q ss_pred hhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcE----------------------
Q 007255 295 LRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF---------------------- 352 (611)
Q Consensus 295 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~---------------------- 352 (611)
+++..+.+...+.. .+.++++||+||||+|||++|+++|+.+.+..
T Consensus 7 ~~~~~~~l~~~i~~------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQA------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHT------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHc------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45566667666652 25567899999999999999999999986532
Q ss_pred --EeecchhhccccccchHHHHHHHHHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCC
Q 007255 353 --FSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ 426 (611)
Q Consensus 353 --~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 426 (611)
..+++.+- ........++.+.+.+.. ....|++|||+|.+. ....+.|++.|+ ++
T Consensus 75 d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~--------------~~a~naLLk~lE--ep 135 (334)
T 1a5t_A 75 DYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT--------------DAAANALLKTLE--EP 135 (334)
T ss_dssp TEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC--------------HHHHHHHHHHHT--SC
T ss_pred CEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC--------------HHHHHHHHHHhc--CC
Confidence 22222100 011223456677666543 235699999999882 346789999998 57
Q ss_pred CCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHH
Q 007255 427 AKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCRE 506 (611)
Q Consensus 427 ~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~ 506 (611)
++++++|++||.++.+.+++++ |+. .+.|++|+.++..++++... ..++..+..+++.+.| +.+.+.++++.
T Consensus 136 ~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~----~~~~~~~~~l~~~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 136 PAETWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV----TMSQDALLAALRLSAG-SPGAALALFQG 207 (334)
T ss_dssp CTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC----CCCHHHHHHHHHHTTT-CHHHHHHTTSS
T ss_pred CCCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHcCC-CHHHHHHHhcc
Confidence 7789999999999999999998 886 79999999999999998654 2234556788888877 66666666554
Q ss_pred H
Q 007255 507 A 507 (611)
Q Consensus 507 a 507 (611)
.
T Consensus 208 ~ 208 (334)
T 1a5t_A 208 D 208 (334)
T ss_dssp H
T ss_pred c
Confidence 3
No 137
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=9.5e-14 Score=143.54 Aligned_cols=187 Identities=20% Similarity=0.236 Sum_probs=129.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC------CcEEEEccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG------AHLTVISPHSV 89 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~------~~~~~v~~~~~ 89 (611)
..+++++|++++++.|..++.. ....+++|+||||||||++++++++.++ ..++.+++++.
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 100 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE 100 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred CCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc
Confidence 6689999999999998887632 1224599999999999999999999864 35777877653
Q ss_pred ccccccchHHHHHHHHHHHHhh------------hhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC
Q 007255 90 HKAHVGESEKALREAFSQASSH------------ALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK 157 (611)
Q Consensus 90 ~~~~~~~~~~~l~~~f~~~~~~------------~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 157 (611)
.. ...++..+...... .....+.||+|||+|.+.+ ..+..|+..++....
T Consensus 101 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~----------~~~~~Ll~~le~~~~-- 162 (353)
T 1sxj_D 101 RG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA----------DAQSALRRTMETYSG-- 162 (353)
T ss_dssp CC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH----------HHHHHHHHHHHHTTT--
T ss_pred cc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH----------HHHHHHHHHHHhcCC--
Confidence 21 11122222111111 1123467999999998854 456778888886432
Q ss_pred CCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHHhccCCccccHHHH
Q 007255 158 TSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEAL 236 (611)
Q Consensus 158 ~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~~~~dl~~l 236 (611)
+..+|.++|.+..+++++++ |+. .+.+++|+.++...+++..+...... .+..++.++..+.|.. +.+.++
T Consensus 163 ----~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~-r~~~~~ 234 (353)
T 1sxj_D 163 ----VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDL-RRGITL 234 (353)
T ss_dssp ----TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCH-HHHHHH
T ss_pred ----CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-HHHHHH
Confidence 45677788999999999998 885 89999999999999999887654432 2334788888777653 333344
Q ss_pred HHHHH
Q 007255 237 CREAT 241 (611)
Q Consensus 237 ~~~a~ 241 (611)
++.+.
T Consensus 235 l~~~~ 239 (353)
T 1sxj_D 235 LQSAS 239 (353)
T ss_dssp HHHTH
T ss_pred HHHHH
Confidence 44433
No 138
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.54 E-value=1.7e-14 Score=154.12 Aligned_cols=202 Identities=19% Similarity=0.178 Sum_probs=123.9
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCC--cEEeec-----chhhccc
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA--SFFSLS-----GAELYSM 363 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~--~~~~~~-----~~~~~~~ 363 (611)
.++|++++++.+...+.. ..++||+||||||||++|+++|..++. +|..++ ++++.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 477899888877766542 247999999999999999999998843 333332 2444443
Q ss_pred cccchHHHHHHHHHHHHhc---CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCC--------CCCCCeEE
Q 007255 364 YVGESEALLRNTFQRARLA---APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL--------EQAKGILV 432 (611)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~---~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--------~~~~~~~v 432 (611)
+.+..... ...|..+... .++|+|||||+.+ .....+.|+..|+.. ...+..++
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~--------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~i 152 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA--------------GPAILNTLLTAINERQFRNGAHVEKIPMRLL 152 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC--------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh--------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhh
Confidence 33322111 1112111111 4679999999865 256778888888631 11122345
Q ss_pred EEecCCCcc---cchhccCCCCccceeecCCCCH-HHHHHHHHHHhcC-------------------------CCCCCcc
Q 007255 433 LAATNRPHA---IDAALMRPGRFDLVLYVPPPDL-EARHEILRVHTRN-------------------------MKVGDDV 483 (611)
Q Consensus 433 I~~tn~~~~---ld~al~r~gRf~~~i~~~~p~~-~~r~~il~~~~~~-------------------------~~~~~~~ 483 (611)
|+|||.+.. ..+++++ ||...+.+|.|+. +++..|++..... ..+. +.
T Consensus 153 I~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~-d~ 229 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLP-DH 229 (500)
T ss_dssp EEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCC-HH
T ss_pred hhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCc-hH
Confidence 777775332 4458898 9999999999987 7788998754321 1111 11
Q ss_pred cHHHHHHhC---------CCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHH
Q 007255 484 DLRSIAEET---------ELFTGAELEGLCREAGIVALREDISATAVRNRHFQ 527 (611)
Q Consensus 484 ~~~~la~~~---------~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~ 527 (611)
-++.++... .|.|++.+..+++.|...|..+. ...++.+|+.
T Consensus 230 v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g--r~~Vt~eDv~ 280 (500)
T 3nbx_X 230 VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG--RSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT--CSBCCGGGGG
T ss_pred HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcC--CccccchHHH
Confidence 133343332 48899999999998877776554 2234444444
No 139
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.52 E-value=8.3e-13 Score=163.83 Aligned_cols=354 Identities=17% Similarity=0.232 Sum_probs=189.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCC
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR 132 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~ 132 (611)
..++++.||+|||||++++++|+.+|.+++.++|++-.+ ...+..+|..+... ++++++||+|.+.+.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-----Gaw~~~DE~nr~~~e- 712 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-----GAWGCFDEFNRLDEK- 712 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-----TCEEEEETTTSSCHH-
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-----CCEeeehhhhhcChH-
Confidence 468999999999999999999999999999999986433 23456666666544 679999999987541
Q ss_pred CCCchhhHHHHHH---HHHHHhcCC-------CCCCCCCcEEEEEeecC----cccccHHhhccCCcceEEEccCCCHHH
Q 007255 133 DHRREQDVRIASQ---LFTLMDSNK-------PSKTSVPHVVVVASTNR----VDAIDPALRRSGRFDAEVEVTVPTAEE 198 (611)
Q Consensus 133 ~~~~~~~~~~~~~---ll~~l~~~~-------~~~~~~~~v~ii~ttn~----~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 198 (611)
....+..+ +...+.... ......+++.+++|+|+ ...+++++++ || ..+.+..|+.+.
T Consensus 713 -----vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~ 784 (2695)
T 4akg_A 713 -----VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGT 784 (2695)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHH
T ss_pred -----HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHH
Confidence 11111111 233332221 11112345788999995 3479999998 88 489999999999
Q ss_pred HHHHHHHhhcCCCCCCc--cc----HHHHHHhccC-----CccccHHHHHHHHHHHHhhhccccc------ccccccchh
Q 007255 199 RFEILKLYTKKVPLDAN--VD----LEAIATSCNG-----YVGADLEALCREATMSAVKRSSDAN------ECAGVLSVT 261 (611)
Q Consensus 199 r~~Il~~~~~~~~~~~~--~~----~~~la~~~~g-----~~~~dl~~l~~~a~~~a~~r~~~~~------~~~~~~~v~ 261 (611)
..+|+-.... +..... .. +..+.++... +.-+++..++..|.........+.. .......+.
T Consensus 785 i~ei~l~s~G-f~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~~~e~~~l~~al~~~~lpk~~ 863 (2695)
T 4akg_A 785 IAEMILQIMG-FEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTVVESLKRVILPSLG 863 (2695)
T ss_dssp HHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHTGGGCC
T ss_pred HHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhccccCc
Confidence 8888643321 111100 00 1222222222 4456677766655432211100000 000000111
Q ss_pred HHH---HHHHHhccCCcccccccccCCCcccccccchhHHHHHHHHHhhc-cCCC--------hhHHhhcCCCCCCCcce
Q 007255 262 MED---WRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEW-PIKH--------STAFSRLGISPVRGALL 329 (611)
Q Consensus 262 ~ed---~~~a~~~i~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~Ll 329 (611)
.+| |......+.|... .| .+...+.+.+.+.+.. .+.. .+.+.-+ ...+|++|
T Consensus 864 ~~D~~lf~~li~dlFp~~~------~~-------~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~--~~r~gvml 928 (2695)
T 4akg_A 864 DTDELVFKDELSKIFDSAG------TP-------LNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQ--KTQQALIL 928 (2695)
T ss_dssp HHHHHHHHHHHHHHCCCCS------CC-------SSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HHCSEEEE
T ss_pred hhhHHHHHHHHHHhCCCCC------CC-------CChHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHH--HhcceEEE
Confidence 122 2222233333221 11 2233344444443321 1111 1111111 23478999
Q ss_pred eCCCCCChHHHHHHHHHHh----CC--cEEeecch-----hhccccccc----hHHHHHHHHHHHHhcC-------CcEE
Q 007255 330 HGPPGCSKTTLAKAAAHAA----EA--SFFSLSGA-----ELYSMYVGE----SEALLRNTFQRARLAA-------PSII 387 (611)
Q Consensus 330 ~Gp~G~GKT~la~ala~~~----~~--~~~~~~~~-----~~~~~~~g~----~~~~~~~~~~~a~~~~-------p~il 387 (611)
+||||||||++.+.+|..+ +. .++.+++. ++++.+... .++.+..+++.+.... ..-|
T Consensus 929 vGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~el~G~~d~~t~eW~DGils~~~R~~~~~~~~~~~~~~~Wi 1008 (2695)
T 4akg_A 929 VGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWV 1008 (2695)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHHHHTTEECTTTCCEECCSHHHHHHHHHTCCCSSCSSEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHhcceecCCCCeEecChHHHHHHHHHhccccccCCCCeEE
Confidence 9999999999999999775 22 34455554 344432211 1234445555443211 2367
Q ss_pred EEcccccccccCCCCCCCCcchhHHHHHHHHHHhcC-----------CCCCCCeEEEEecCCCcccchhccCCCCcccee
Q 007255 388 FFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG-----------LEQAKGILVLAATNRPHAIDAALMRPGRFDLVL 456 (611)
Q Consensus 388 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----------~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i 456 (611)
++|-- .....+..|=..||. +.-++++-+|+-+.......||-.+ |+. .|
T Consensus 1009 vfDG~----------------vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv~dL~~ASPATVS--RcG-mv 1069 (2695)
T 4akg_A 1009 VFDSD----------------LDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPATIT--RCG-LL 1069 (2695)
T ss_dssp EECSC----------------CCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEESCCTTSCHHHHH--HSE-EE
T ss_pred EECCC----------------CCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEecccccCCcccee--eee-EE
Confidence 77710 112233333333442 1112345566667777778888877 777 77
Q ss_pred ecCCC
Q 007255 457 YVPPP 461 (611)
Q Consensus 457 ~~~~p 461 (611)
++.+-
T Consensus 1070 y~~~~ 1074 (2695)
T 4akg_A 1070 WFSTD 1074 (2695)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 77643
No 140
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.49 E-value=1.1e-13 Score=137.19 Aligned_cols=202 Identities=12% Similarity=0.166 Sum_probs=117.5
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEccccccccc
Q 007255 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG---AHLTVISPHSVHKAH 93 (611)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~---~~~~~v~~~~~~~~~ 93 (611)
+|++++|.+..++.+.+.+.... ..+.++||+||||||||++++++++.+. .+++.++++.+....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 57889999999999887765421 2357999999999999999999999875 679999988763211
Q ss_pred ccchHHHH----HHHHHHHHh----hhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCC
Q 007255 94 VGESEKAL----REAFSQASS----HALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSV 160 (611)
Q Consensus 94 ~~~~~~~l----~~~f~~~~~----~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~ 160 (611)
. ...+ ...|..... ......+++|||||+|.+.+ ..+..|+..++..... ....
T Consensus 73 ~---~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~~~ 139 (265)
T 2bjv_A 73 L---DSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM----------MVQEKLLRVIEYGELERVGGSQPLQ 139 (265)
T ss_dssp H---HHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH----------HHHHHHHHHHHHCEECCCCC--CEE
T ss_pred H---HHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH----------HHHHHHHHHHHhCCeecCCCccccc
Confidence 0 0000 001110000 00012367999999998854 5577888888753210 0112
Q ss_pred CcEEEEEeecCc-------ccccHHhhccCCcc-eEEEccCCCH--HHHHHHHHHhhcC----CCCCC--cc---cHHHH
Q 007255 161 PHVVVVASTNRV-------DAIDPALRRSGRFD-AEVEVTVPTA--EERFEILKLYTKK----VPLDA--NV---DLEAI 221 (611)
Q Consensus 161 ~~v~ii~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~~--~~r~~Il~~~~~~----~~~~~--~~---~~~~l 221 (611)
.++.+|++||.. ..+++++.+ ||. ..+.+|+++. ++...++++++.. ..... .. .++.+
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L 217 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETL 217 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHH
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHH
Confidence 357889999874 246788887 885 4566666654 5566665554432 22211 11 23444
Q ss_pred HHhccCCccccHHHHHHHHHHHH
Q 007255 222 ATSCNGYVGADLEALCREATMSA 244 (611)
Q Consensus 222 a~~~~g~~~~dl~~l~~~a~~~a 244 (611)
....-..+.+++.++++.++..+
T Consensus 218 ~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 218 LNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHhC
Confidence 33322234567778877766443
No 141
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=1.3e-12 Score=134.45 Aligned_cols=174 Identities=21% Similarity=0.291 Sum_probs=121.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEEcccccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-----HLTVISPHSVH 90 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~-----~~~~v~~~~~~ 90 (611)
..+++++|++.+++.|...+.. | .. .+++|+||||||||++++++|+.+.. .+..+++++..
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~-----------g-~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 88 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDE-----------G-KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR 88 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT-----------T-CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C-CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc
Confidence 6789999999999999887743 1 12 24999999999999999999998743 35666665421
Q ss_pred cccccchHHHHHHHHHHHHhh--hhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 007255 91 KAHVGESEKALREAFSQASSH--ALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS 168 (611)
Q Consensus 91 ~~~~~~~~~~l~~~f~~~~~~--~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~t 168 (611)
+ ...++......... .....+.|++|||+|.+.. ..++.|+..++... ..+.+|.+
T Consensus 89 ----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~----------~~~~~L~~~le~~~------~~~~~il~ 146 (340)
T 1sxj_C 89 ----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN----------AAQNALRRVIERYT------KNTRFCVL 146 (340)
T ss_dssp ----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH----------HHHHHHHHHHHHTT------TTEEEEEE
T ss_pred ----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH----------HHHHHHHHHHhcCC------CCeEEEEE
Confidence 1 22233333322211 1123468999999998843 45677888888642 24677888
Q ss_pred ecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCC-cccHHHHHHhccC
Q 007255 169 TNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNG 227 (611)
Q Consensus 169 tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g 227 (611)
||.+..+.+++++ |+. .+.|++++.++..+++...+......- +.....++..+.|
T Consensus 147 ~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 147 ANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred ecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999999998 885 789999999999999998875433322 2235566665544
No 142
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.48 E-value=1.8e-12 Score=135.73 Aligned_cols=220 Identities=17% Similarity=0.120 Sum_probs=141.4
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCc--eEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEcccccccc
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPR--GLLLYGPPGTGKTSLVRAVVREC----GAHLTVISPHSVHKA 92 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~--~iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~~~~~~~ 92 (611)
++++|.++.++.|..++...... ..+. +++|+||||||||++++++++.+ +..++.+++......
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 78999999999999988653221 1234 89999999999999999999998 567888886543210
Q ss_pred ----------------cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC
Q 007255 93 ----------------HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS 156 (611)
Q Consensus 93 ----------------~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 156 (611)
..+.....+...+..... ...+|.||+|||+|.+. ...+..|+.+++.....
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~vlilDE~~~l~----------~~~~~~L~~~~~~~~~~ 155 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR--ERDLYMFLVLDDAFNLA----------PDILSTFIRLGQEADKL 155 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH--HTTCCEEEEEETGGGSC----------HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHh--hcCCeEEEEEECccccc----------hHHHHHHHHHHHhCCCC
Confidence 011111111111111111 12458899999999882 25567777777542210
Q ss_pred CCCCCcEEEEEeecCc---ccccHHhhccCCcce-EEEccCCCHHHHHHHHHHhhcCC---CCCCcccHHHHHHhccCC-
Q 007255 157 KTSVPHVVVVASTNRV---DAIDPALRRSGRFDA-EVEVTVPTAEERFEILKLYTKKV---PLDANVDLEAIATSCNGY- 228 (611)
Q Consensus 157 ~~~~~~v~ii~ttn~~---~~l~~~l~~~~Rf~~-~i~~~~p~~~~r~~Il~~~~~~~---~~~~~~~~~~la~~~~g~- 228 (611)
. ..++.+|+++|.+ +.+++.+.+ ||.. .+.|++++.++..++++..+... ..-.+..++.++..+.+.
T Consensus 156 ~--~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 156 G--AFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 231 (389)
T ss_dssp S--SCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred C--cCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcc
Confidence 0 0257888888877 578888887 7764 79999999999999999877541 112233477777777422
Q ss_pred -------ccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhc
Q 007255 229 -------VGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSV 271 (611)
Q Consensus 229 -------~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~ 271 (611)
..+.+.++++.+...+..... ..++.+++..+...
T Consensus 232 ~~~~~~G~~r~~~~~l~~a~~~a~~~~~--------~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 232 PLDTNRGDARLAIDILYRSAYAAQQNGR--------KHIAPEDVRKSSKE 273 (389)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHHTTC--------SSCCHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhCC--------CCcCHHHHHHHHHH
Confidence 345566777777655543221 23556666655443
No 143
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.47 E-value=2.1e-12 Score=132.26 Aligned_cols=170 Identities=19% Similarity=0.193 Sum_probs=121.1
Q ss_pred CcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------------
Q 007255 23 GNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH---------------------- 80 (611)
Q Consensus 23 G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~---------------------- 80 (611)
.+++..+.|...+.. -+.+..+||+||||+|||++++++|+.+.+.
T Consensus 6 w~~~~~~~l~~~i~~------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GGHHHHHHHHHHHHT------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHc------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 467777777776643 1345679999999999999999999988642
Q ss_pred --EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCC
Q 007255 81 --LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKT 158 (611)
Q Consensus 81 --~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 158 (611)
+..+++..- ........++.+.+.+...+..++..|++|||+|.|.. ..++.|+..+++
T Consensus 74 ~d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~----------~a~naLLk~lEe------ 134 (334)
T 1a5t_A 74 PDYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD----------AAANALLKTLEE------ 134 (334)
T ss_dssp TTEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH----------HHHHHHHHHHTS------
T ss_pred CCEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH----------HHHHHHHHHhcC------
Confidence 233332200 01122345667776665554455678999999999853 457788999886
Q ss_pred CCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCcc
Q 007255 159 SVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVG 230 (611)
Q Consensus 159 ~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~ 230 (611)
++.++++|.+|+.++.+.+.+++ |+. .+.|++|+.++..++++... .. .+..+..++..++|..+
T Consensus 135 p~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~~r 199 (334)
T 1a5t_A 135 PPAETWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAGSPG 199 (334)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTCHH
T ss_pred CCCCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHH
Confidence 23467888889999999999998 884 79999999999999998765 22 23345677777766443
No 144
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.47 E-value=1e-13 Score=137.35 Aligned_cols=195 Identities=17% Similarity=0.142 Sum_probs=114.0
Q ss_pred cccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhC---CcEEeecchhhccc
Q 007255 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE---ASFFSLSGAELYSM 363 (611)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~---~~~~~~~~~~~~~~ 363 (611)
.+|++++|.+...+.+.+.+.... ..+.++||+||||||||++|++++..+. .+++.++++.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 368889999888888777665321 2346799999999999999999999874 68999998876321
Q ss_pred c-----ccchH----HH---HHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC------
Q 007255 364 Y-----VGESE----AL---LRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE------ 425 (611)
Q Consensus 364 ~-----~g~~~----~~---~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~------ 425 (611)
. .|... .. ....+. ...+++|||||+|.+. ......|+..|+...
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~--------------~~~q~~Ll~~l~~~~~~~~g~ 134 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAP--------------MMVQEKLLRVIEYGELERVGG 134 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHH---HTTTSEEEEESGGGSC--------------HHHHHHHHHHHHHCEECCCCC
T ss_pred HHHHHhcCCcccccccccccccchhh---hcCCcEEEEechHhcC--------------HHHHHHHHHHHHhCCeecCCC
Confidence 1 01000 00 001121 2245699999999873 345567777776321
Q ss_pred ---CCCCeEEEEecCCC-c------ccchhccCCCCcc-ceeecCCCCH--HHHHHHHHHHh----cCCCC-----CCcc
Q 007255 426 ---QAKGILVLAATNRP-H------AIDAALMRPGRFD-LVLYVPPPDL--EARHEILRVHT----RNMKV-----GDDV 483 (611)
Q Consensus 426 ---~~~~~~vI~~tn~~-~------~ld~al~r~gRf~-~~i~~~~p~~--~~r~~il~~~~----~~~~~-----~~~~ 483 (611)
...++.+|+|||.+ . .+++++.+ ||. ..+.+|+.+. ++...+++.++ +.... .++.
T Consensus 135 ~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~ 212 (265)
T 2bjv_A 135 SQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTER 212 (265)
T ss_dssp --CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHH
T ss_pred cccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHH
Confidence 12457889999975 2 35677777 886 3455555443 34444544332 22222 1233
Q ss_pred cHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007255 484 DLRSIAEETELFTGAELEGLCREAGIVA 511 (611)
Q Consensus 484 ~~~~la~~~~g~s~~~i~~~~~~a~~~a 511 (611)
.+..|.......+.++++++++.+...+
T Consensus 213 a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 213 ARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 3455655543335678888888766543
No 145
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=1.5e-12 Score=136.09 Aligned_cols=219 Identities=20% Similarity=0.231 Sum_probs=139.5
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCcEEEEccccccc
Q 007255 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC------GAHLTVISPHSVHK 91 (611)
Q Consensus 18 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l------~~~~~~v~~~~~~~ 91 (611)
.++++|.++.++.|.+++..... -..+.+++|+||+|||||++++.+++.+ +..++.+++.....
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 37899999999999887643211 1345799999999999999999999988 78888888653221
Q ss_pred c----------------cccchHHH-HHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCC
Q 007255 92 A----------------HVGESEKA-LREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK 154 (611)
Q Consensus 92 ~----------------~~~~~~~~-l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~ 154 (611)
. ..+..... ...++..... .+.|.||+|||++.+....+ ...+..++..++...
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~vlilDE~~~l~~~~~------~~~l~~l~~~~~~~~ 160 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD---YGSQVVIVLDEIDAFVKKYN------DDILYKLSRINSEVN 160 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT---CCSCEEEEEETHHHHHHSSC------STHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc---cCCeEEEEEcChhhhhccCc------CHHHHHHhhchhhcC
Confidence 0 01111222 3333332221 23489999999998864321 134666777776531
Q ss_pred CCCCCCCcEEEEEeecCc---ccccHHhhccCCcc-eEEEccCCCHHHHHHHHHHhhcCCC---CCCcccHHHHHHhcc-
Q 007255 155 PSKTSVPHVVVVASTNRV---DAIDPALRRSGRFD-AEVEVTVPTAEERFEILKLYTKKVP---LDANVDLEAIATSCN- 226 (611)
Q Consensus 155 ~~~~~~~~v~ii~ttn~~---~~l~~~l~~~~Rf~-~~i~~~~p~~~~r~~Il~~~~~~~~---~~~~~~~~~la~~~~- 226 (611)
..++.+|++++.+ ..+++.+.+ ||. ..+.+++++.++..++++..+.... .-.+..+..++..+.
T Consensus 161 -----~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (386)
T 2qby_A 161 -----KSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAR 233 (386)
T ss_dssp -----C--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHH
T ss_pred -----CCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 2257888888876 467888888 775 4899999999999999998764211 112223566666665
Q ss_pred --CCccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHh
Q 007255 227 --GYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARS 270 (611)
Q Consensus 227 --g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~ 270 (611)
|. .+.+.++++.+...+... +...++.+++..+..
T Consensus 234 ~~G~-~r~~~~ll~~a~~~a~~~--------~~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 234 EHGD-ARRALDLLRVSGEIAERM--------KDTKVKEEYVYMAKE 270 (386)
T ss_dssp TTCC-HHHHHHHHHHHHHHHHHT--------TCSSCCHHHHHHHHH
T ss_pred hcCC-HHHHHHHHHHHHHHHHhc--------CCCccCHHHHHHHHH
Confidence 44 344455666665544321 112356666655543
No 146
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=4.7e-14 Score=154.91 Aligned_cols=220 Identities=19% Similarity=0.187 Sum_probs=135.1
Q ss_pred ccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEee----cchhhccccc
Q 007255 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL----SGAELYSMYV 365 (611)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~----~~~~~~~~~~ 365 (611)
..|.|++.+|+.+...+.... .........+...++||+||||||||++|+++|..++..++.. ++.++.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~--~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGV--PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCC--CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCCC--cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 468899999887754443210 0000001123334899999999999999999999987666543 2333332211
Q ss_pred cchH-H---HHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC-----------CCCCe
Q 007255 366 GESE-A---LLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-----------QAKGI 430 (611)
Q Consensus 366 g~~~-~---~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~ 430 (611)
.... . .....+.. ..++|+||||+|.+. ....+.|+..|+... .+.++
T Consensus 373 ~~~~~g~~~~~~G~l~~---A~~gil~IDEid~l~--------------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVL---ADGGIAVIDEIDKMR--------------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp SGGGTSSCSEEECHHHH---HSSSEECCTTTTCCC--------------SHHHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred eccccccccccCCeeEe---cCCCcEEeehhhhCC--------------HhHhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 1100 0 00001111 245699999999872 345677888887421 13468
Q ss_pred EEEEecCCCc-------------ccchhccCCCCcc-ceeecCCCCHHHHHHHHHHHhcCCC------------------
Q 007255 431 LVLAATNRPH-------------AIDAALMRPGRFD-LVLYVPPPDLEARHEILRVHTRNMK------------------ 478 (611)
Q Consensus 431 ~vI~~tn~~~-------------~ld~al~r~gRf~-~~i~~~~p~~~~r~~il~~~~~~~~------------------ 478 (611)
.||+|||.++ .+++++++ ||| ..+..+.|+.+ ...|.+..+....
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~ 512 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIA 512 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHH
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHH
Confidence 8999999886 89999999 998 45566778877 7788776654322
Q ss_pred --------CCCcccHHHHHHh--------------CCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Q 007255 479 --------VGDDVDLRSIAEE--------------TELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSL 533 (611)
Q Consensus 479 --------~~~~~~~~~la~~--------------~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~ 533 (611)
..++...+.+... ..+.|.+.+..+++.|...|..+. ...++.+|+..|+.-+
T Consensus 513 ~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~--~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 513 YARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL--KAEVTREDAERAINIM 587 (595)
T ss_dssp HHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS--SCCSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC--cCCCCHHHHHHHHHHH
Confidence 1112222333333 346778888888887777665443 4457777777777543
No 147
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=1.6e-12 Score=134.53 Aligned_cols=188 Identities=19% Similarity=0.247 Sum_probs=123.1
Q ss_pred ccccccCCcHHHHHHHHHHH-HhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---------------
Q 007255 16 KAEEAIGGNRAAVEALRELI-TFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA--------------- 79 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l-~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~--------------- 79 (611)
..+++++|++.+++.|..++ .. + ..+ +++|+||+|||||++++++++.+..
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~ 77 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQP-----------R-DLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT 77 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT-----------T-CCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------
T ss_pred CCHHHhcCCHHHHHHHHHHHhhC-----------C-CCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc
Confidence 66799999999999887765 11 1 223 3999999999999999999996521
Q ss_pred --------------cEEEEcccccccccccchHHHHHHHHHHHHhhhh----------cCCCeEEEEccccccCCCCCCC
Q 007255 80 --------------HLTVISPHSVHKAHVGESEKALREAFSQASSHAL----------SGKPSVVFIDEIDALCPRRDHR 135 (611)
Q Consensus 80 --------------~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~----------~~~~~il~IDeid~l~~~~~~~ 135 (611)
.++.++++... ......++..++....... ..++.|++|||++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~----- 148 (354)
T 1sxj_E 78 ASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK----- 148 (354)
T ss_dssp --------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH-----
T ss_pred cccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-----
Confidence 11222221110 0011123344433322110 23578999999998632
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCC-C
Q 007255 136 REQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-A 214 (611)
Q Consensus 136 ~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~ 214 (611)
..++.++..++... .++.+|.+|+.++.+.+.+++ |+ ..+.|++|+.+++.++++..+...+.. .
T Consensus 149 -----~~~~~L~~~le~~~------~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (354)
T 1sxj_E 149 -----DAQAALRRTMEKYS------KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLE 214 (354)
T ss_dssp -----HHHHHHHHHHHHST------TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEEC
T ss_pred -----HHHHHHHHHHHhhc------CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 45677888888642 246788888998999999998 88 689999999999999999887654433 2
Q ss_pred -cccHHHHHHhccCCccccHHHHHHHH
Q 007255 215 -NVDLEAIATSCNGYVGADLEALCREA 240 (611)
Q Consensus 215 -~~~~~~la~~~~g~~~~dl~~l~~~a 240 (611)
+..+..++..+.|. .+++.++++.+
T Consensus 215 ~~~~l~~i~~~~~G~-~r~a~~~l~~~ 240 (354)
T 1sxj_E 215 TKDILKRIAQASNGN-LRVSLLMLESM 240 (354)
T ss_dssp CSHHHHHHHHHHTTC-HHHHHHHHTHH
T ss_pred cHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 33577788777654 33333444433
No 148
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.44 E-value=8.9e-13 Score=158.35 Aligned_cols=119 Identities=20% Similarity=0.228 Sum_probs=84.5
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhc----cc------------cccchHHHHHHHHHHHH
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELY----SM------------YVGESEALLRNTFQRAR 380 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~----~~------------~~g~~~~~~~~~~~~a~ 380 (611)
|++++++++|+||||||||+||.+++.+. |.....++..+.. .+ .....+..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 46788899999999999999999998876 4445555544322 11 12245677778888888
Q ss_pred hcCCcEEEEcccccccccC---CCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 007255 381 LAAPSIIFFDEADVVGAKR---GGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRP 439 (611)
Q Consensus 381 ~~~p~il~iDeid~l~~~~---~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 439 (611)
...|++|+|||++.+.+.. +..++.......++++++|..|.+.....++++| +||.+
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI-~tNq~ 1563 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1563 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEE-EEECE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEE-EEccc
Confidence 8999999999999888742 2222222222467888888888887777788887 45543
No 149
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.44 E-value=4.3e-13 Score=135.32 Aligned_cols=196 Identities=17% Similarity=0.208 Sum_probs=122.3
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccccccccc--
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAH-- 93 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~-- 93 (611)
++++|.....+.+.+.+... ...+.++||+||||||||++|+++++.. +.+++.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 46899999999988877542 1245799999999999999999999976 5688999988654311
Q ss_pred ---ccc----hHH---HHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----CC
Q 007255 94 ---VGE----SEK---ALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KT 158 (611)
Q Consensus 94 ---~~~----~~~---~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~ 158 (611)
+|. ... .....|..+ .+++|||||+|.+.. ..+..|+..++..... ..
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a-------~~g~L~LDEi~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEA-------DGGTLFLDEIGDISP----------LMQVRLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHH-------TTSEEEEESCTTCCH----------HHHHHHHHHHHSSBCCBTTBCCC
T ss_pred HHhcCccccccCchhhhhcCHHHhc-------CCCEEEEeccccCCH----------HHHHHHHHHHhcCEeeecCCccc
Confidence 000 000 011223322 257999999998854 5677888888864311 11
Q ss_pred CCCcEEEEEeecCc-------ccccHHhhccCCcc-eEEEccCCC--HHHHHHHHHHhhcC----CCC---C-CcccHHH
Q 007255 159 SVPHVVVVASTNRV-------DAIDPALRRSGRFD-AEVEVTVPT--AEERFEILKLYTKK----VPL---D-ANVDLEA 220 (611)
Q Consensus 159 ~~~~v~ii~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~--~~~r~~Il~~~~~~----~~~---~-~~~~~~~ 220 (611)
...++.+|++||.. ..+++++.. ||. ..+.+|++. .++...++++++.. ... . .+..+..
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~ 211 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDL 211 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHH
Confidence 12357899999974 135677776 774 346666665 45666666665432 111 1 1112444
Q ss_pred HHHhccCCccccHHHHHHHHHHHH
Q 007255 221 IATSCNGYVGADLEALCREATMSA 244 (611)
Q Consensus 221 la~~~~g~~~~dl~~l~~~a~~~a 244 (611)
+....-..+.+++.+++..++..+
T Consensus 212 L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 212 LIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred HHcCCCCCCHHHHHHHHHHHHHhC
Confidence 444331234577888888776543
No 150
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.43 E-value=5.2e-13 Score=142.66 Aligned_cols=159 Identities=17% Similarity=0.159 Sum_probs=99.8
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEcccc-----ccc
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA--HLTVISPHS-----VHK 91 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~~~~-----~~~ 91 (611)
..++|++++++.+...+.. ..++||+||||||||++|+++|+.++. ++..+++.- +..
T Consensus 22 ~~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 4588999999888766533 269999999999999999999998853 455554431 111
Q ss_pred ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCCCcEEEE
Q 007255 92 AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSVPHVVVV 166 (611)
Q Consensus 92 ~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~~~v~ii 166 (611)
...+.... -...|..+.... ...++|||||||+.+.+ ..+..|+..|+..... ...+.. ++|
T Consensus 87 ~~~~~~~~-~~g~~~~~~~g~-l~~~~IL~IDEI~r~~~----------~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI 153 (500)
T 3nbx_X 87 PLSIQALK-DEGRYERLTSGY-LPEAEIVFLDEIWKAGP----------AILNTLLTAINERQFRNGAHVEKIPMR-LLV 153 (500)
T ss_dssp CBC-----------CBCCTTS-GGGCSEEEEESGGGCCH----------HHHHHHHHHHHSSEEECSSSEEECCCC-EEE
T ss_pred cccHHHHh-hchhHHhhhccC-CCcceeeeHHhHhhhcH----------HHHHHHHHHHHHHhccCCCCcCCcchh-hhh
Confidence 11111000 011121111110 01367999999987643 6788899999753211 111222 457
Q ss_pred EeecCcc---cccHHhhccCCcceEEEccCCCH-HHHHHHHHHhh
Q 007255 167 ASTNRVD---AIDPALRRSGRFDAEVEVTVPTA-EERFEILKLYT 207 (611)
Q Consensus 167 ~ttn~~~---~l~~~l~~~~Rf~~~i~~~~p~~-~~r~~Il~~~~ 207 (611)
++||+.. ...+++.+ ||...+.+++|+. +++..|++...
T Consensus 154 ~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 154 AASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp EEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred hccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 7777632 24468888 9988899999987 77888887654
No 151
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=2.1e-12 Score=129.91 Aligned_cols=146 Identities=14% Similarity=0.187 Sum_probs=110.7
Q ss_pred CcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCcEEEEcccccccccccc
Q 007255 23 GNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC------GAHLTVISPHSVHKAHVGE 96 (611)
Q Consensus 23 G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l------~~~~~~v~~~~~~~~~~~~ 96 (611)
|++++++.|...+.. | + ..++||+||||+|||++++++|+.+ ...+..++++.- ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHC-----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 678888888888754 1 1 4689999999999999999999874 346777775421 12
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCccccc
Q 007255 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAID 176 (611)
Q Consensus 97 ~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~ 176 (611)
....++.+.+.+...+..++..|++|||+|.|.. ..++.|+..+++ +++++++|.+|+.++.+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~----------~a~naLLk~LEe------p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ----------QAANAFLKALEE------PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH----------HHHHHTHHHHHS------CCTTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCH----------HHHHHHHHHHhC------CCCCeEEEEEECChHhCh
Confidence 2345677777776555455678999999999853 457889999986 334678888888899999
Q ss_pred HHhhccCCcceEEEccCCCHHHHHHHHHHhh
Q 007255 177 PALRRSGRFDAEVEVTVPTAEERFEILKLYT 207 (611)
Q Consensus 177 ~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~ 207 (611)
|.+++ | .+.|++|+.++..++++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 7 68999999999999998876
No 152
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=7.7e-13 Score=133.02 Aligned_cols=142 Identities=11% Similarity=0.137 Sum_probs=108.7
Q ss_pred chhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh------CCcEEeecchhhccccccc
Q 007255 294 GLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA------EASFFSLSGAELYSMYVGE 367 (611)
Q Consensus 294 g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~------~~~~~~~~~~~~~~~~~g~ 367 (611)
|++++.+.|...+.. + . .+++|||||||+|||++|+++|..+ ...++.+++++ . ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CB
T ss_pred ChHHHHHHHHHHHHC-----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CC
Confidence 577788888888764 2 2 4689999999999999999999864 33566666542 1 12
Q ss_pred hHHHHHHHHHHHHhcC----CcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccc
Q 007255 368 SEALLRNTFQRARLAA----PSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAID 443 (611)
Q Consensus 368 ~~~~~~~~~~~a~~~~----p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld 443 (611)
....++.+.+.+...+ ..|++|||+|.+- ....+.|++.|+ ++++++++|++|+.|+.+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt--------------~~a~naLLk~LE--ep~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT--------------QQAANAFLKALE--EPPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC--------------HHHHHHTHHHHH--SCCTTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhC--------------HHHHHHHHHHHh--CCCCCeEEEEEECChHhCh
Confidence 2345677777765332 3599999999882 456789999998 6778899999999999999
Q ss_pred hhccCCCCccceeecCCCCHHHHHHHHHHHh
Q 007255 444 AALMRPGRFDLVLYVPPPDLEARHEILRVHT 474 (611)
Q Consensus 444 ~al~r~gRf~~~i~~~~p~~~~r~~il~~~~ 474 (611)
+++.+ | ++.|++|+.++..+.++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99998 8 89999999999999998665
No 153
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.41 E-value=2.9e-13 Score=136.58 Aligned_cols=190 Identities=18% Similarity=0.196 Sum_probs=117.1
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccc----
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM---- 363 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~---- 363 (611)
+++|.....+.+.+.+... .....++||+||||||||++|++++... +.+|+.++++.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 5778877777777766542 1334679999999999999999999976 678999988765321
Q ss_pred ---------cccchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC---------
Q 007255 364 ---------YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--------- 425 (611)
Q Consensus 364 ---------~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------- 425 (611)
+.|... .....|..+ .+++|||||++.+. ......|+..|+...
T Consensus 72 ~lfg~~~g~~tg~~~-~~~g~~~~a---~~g~L~LDEi~~l~--------------~~~q~~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 72 ELFGHEKGAFTGADK-RREGRFVEA---DGGTLFLDEIGDIS--------------PLMQVRLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp HHTCCCSSCCC---C-CCCCHHHHH---TTSEEEEESCTTCC--------------HHHHHHHHHHHHSSBCCBTTBCCC
T ss_pred HhcCccccccCchhh-hhcCHHHhc---CCCEEEEeccccCC--------------HHHHHHHHHHHhcCEeeecCCccc
Confidence 111110 111223333 35699999999872 345677787776432
Q ss_pred CCCCeEEEEecCCCc-------ccchhccCCCCcc-ceeecCCCC--HHHHHHHHHHHhcC----CC----CCCcccHHH
Q 007255 426 QAKGILVLAATNRPH-------AIDAALMRPGRFD-LVLYVPPPD--LEARHEILRVHTRN----MK----VGDDVDLRS 487 (611)
Q Consensus 426 ~~~~~~vI~~tn~~~-------~ld~al~r~gRf~-~~i~~~~p~--~~~r~~il~~~~~~----~~----~~~~~~~~~ 487 (611)
...++.+|+|||.+- .+++++.. ||. ..|.+|+.. .++...+++.++.. .. ..++..+..
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~ 211 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDL 211 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHH
Confidence 123588999999751 24555665 775 334555444 34444555544322 21 113334666
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHH
Q 007255 488 IAEETELFTGAELEGLCREAGIVA 511 (611)
Q Consensus 488 la~~~~g~s~~~i~~~~~~a~~~a 511 (611)
|......-+.+++++++..+...+
T Consensus 212 L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 212 LIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred HHcCCCCCCHHHHHHHHHHHHHhC
Confidence 776653336678888888776654
No 154
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.40 E-value=2.4e-13 Score=121.17 Aligned_cols=132 Identities=16% Similarity=0.181 Sum_probs=91.7
Q ss_pred ccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccchHH
Q 007255 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEK 99 (611)
Q Consensus 20 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~~~ 99 (611)
+++|.+..++.+.+.+.... ..+.+++|+||||||||++|+++++..+ +++.++++.+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 57899999999988875421 2457899999999999999999999888 89999988765432
Q ss_pred HHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCc-cc----
Q 007255 100 ALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRV-DA---- 174 (611)
Q Consensus 100 ~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~-~~---- 174 (611)
....+..+ ++++|||||+|.+.+ ..+..++..++... ..++.+|++||.. +.
T Consensus 67 -~~~~~~~a-------~~~~l~lDei~~l~~----------~~q~~Ll~~l~~~~-----~~~~~iI~~tn~~~~~~~~~ 123 (143)
T 3co5_A 67 -PMELLQKA-------EGGVLYVGDIAQYSR----------NIQTGITFIIGKAE-----RCRVRVIASCSYAAGSDGIS 123 (143)
T ss_dssp -HHHHHHHT-------TTSEEEEEECTTCCH----------HHHHHHHHHHHHHT-----TTTCEEEEEEEECTTTC--C
T ss_pred -hhhHHHhC-------CCCeEEEeChHHCCH----------HHHHHHHHHHHhCC-----CCCEEEEEecCCCHHHHHhC
Confidence 33444443 257999999998854 45677788887642 1246788888753 33
Q ss_pred ccHHhhccCCcc-eEEEccCC
Q 007255 175 IDPALRRSGRFD-AEVEVTVP 194 (611)
Q Consensus 175 l~~~l~~~~Rf~-~~i~~~~p 194 (611)
+++.+.. |+. ..|.+|+.
T Consensus 124 ~~~~L~~--rl~~~~i~lPpL 142 (143)
T 3co5_A 124 CEEKLAG--LFSESVVRIPPL 142 (143)
T ss_dssp HHHHHHH--HSSSEEEEECCC
T ss_pred ccHHHHH--HhcCcEEeCCCC
Confidence 5556665 543 35666653
No 155
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.40 E-value=6.5e-13 Score=118.69 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=89.6
Q ss_pred ccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccc
Q 007255 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGE 96 (611)
Q Consensus 20 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~ 96 (611)
+++|.....+.+.+.+... ...+.++||+||||||||++|+++++.. +.+++ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 5789999999998877542 1245789999999999999999999987 66888 888876543
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcc---
Q 007255 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD--- 173 (611)
Q Consensus 97 ~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~--- 173 (611)
......+..+. +++|||||+|.+.+ ..+..|+..+.... .++.+|++||.+-
T Consensus 66 --~~~~~~~~~a~-------~g~l~ldei~~l~~----------~~q~~Ll~~l~~~~------~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 66 --PQLNDFIALAQ-------GGTLVLSHPEHLTR----------EQQYHLVQLQSQEH------RPFRLIGIGDTSLVEL 120 (145)
T ss_dssp --SCHHHHHHHHT-------TSCEEEECGGGSCH----------HHHHHHHHHHHSSS------CSSCEEEEESSCHHHH
T ss_pred --hhhhcHHHHcC-------CcEEEEcChHHCCH----------HHHHHHHHHHhhcC------CCEEEEEECCcCHHHH
Confidence 12334444442 57999999998854 55777888884422 2456888888631
Q ss_pred ----cccHHhhccCCcc-eEEEccC
Q 007255 174 ----AIDPALRRSGRFD-AEVEVTV 193 (611)
Q Consensus 174 ----~l~~~l~~~~Rf~-~~i~~~~ 193 (611)
.+.+.+.. |+. ..|.+|+
T Consensus 121 ~~~~~~~~~L~~--rl~~~~i~lPp 143 (145)
T 3n70_A 121 AASNHIIAELYY--CFAMTQIACLP 143 (145)
T ss_dssp HHHSCCCHHHHH--HHHHHEEECCC
T ss_pred HHcCCCCHHHHH--HhcCCEEeCCC
Confidence 34455544 443 2455555
No 156
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=1.7e-13 Score=150.46 Aligned_cols=169 Identities=20% Similarity=0.202 Sum_probs=104.7
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEc----ccccccccc
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVIS----PHSVHKAHV 94 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~----~~~~~~~~~ 94 (611)
..|+|++++++.+...+... ..........+...++||+||||||||++|+++|+.++...+... +..+.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 46899999887764332110 000000011233459999999999999999999999876654432 122211111
Q ss_pred cchHH----HHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-------CCCCCcE
Q 007255 95 GESEK----ALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-------KTSVPHV 163 (611)
Q Consensus 95 ~~~~~----~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~~~v 163 (611)
..... .....+..+ .++|+||||+|.+.+ ..+..|+..|+..... ...+.++
T Consensus 373 ~~~~~g~~~~~~G~l~~A-------~~gil~IDEid~l~~----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA-------DGGIAVIDEIDKMRD----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp SGGGTSSCSEEECHHHHH-------SSSEECCTTTTCCCS----------HHHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred eccccccccccCCeeEec-------CCCcEEeehhhhCCH----------hHhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 00000 000111111 257999999999865 5678889999864321 1123467
Q ss_pred EEEEeecCcc-------------cccHHhhccCCcc-eEEEccCCCHHHHHHHHHHhhcC
Q 007255 164 VVVASTNRVD-------------AIDPALRRSGRFD-AEVEVTVPTAEERFEILKLYTKK 209 (611)
Q Consensus 164 ~ii~ttn~~~-------------~l~~~l~~~~Rf~-~~i~~~~p~~~~r~~Il~~~~~~ 209 (611)
.+|+|||+.. .+++++++ ||+ ..+..+.|+.+ ...|.++.+..
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 8999999976 88999999 996 45566777777 77888776654
No 157
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.38 E-value=5.4e-13 Score=119.22 Aligned_cols=112 Identities=10% Similarity=0.129 Sum_probs=78.4
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccc
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGE 367 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~ 367 (611)
+++|.....+.+.+.+... .....++||+||||||||++|++++... +.+|+ ++++.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 4677777777777666531 1234579999999999999999999987 77888 998877554
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 007255 368 SEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRP 439 (611)
Q Consensus 368 ~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 439 (611)
......+..+ .+++|||||+|.+. ......|+..|. ....++.+|+|||.+
T Consensus 66 --~~~~~~~~~a---~~g~l~ldei~~l~--------------~~~q~~Ll~~l~--~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALA---QGGTLVLSHPEHLT--------------REQQYHLVQLQS--QEHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHH---TTSCEEEECGGGSC--------------HHHHHHHHHHHH--SSSCSSCEEEEESSC
T ss_pred --hhhhcHHHHc---CCcEEEEcChHHCC--------------HHHHHHHHHHHh--hcCCCEEEEEECCcC
Confidence 1123344443 45699999999882 345567777775 344567788888875
No 158
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.34 E-value=8e-12 Score=138.15 Aligned_cols=232 Identities=19% Similarity=0.235 Sum_probs=143.4
Q ss_pred ccCCCcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcE---Eeecch
Q 007255 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF---FSLSGA 358 (611)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~---~~~~~~ 358 (611)
..+++..|++++|++.+++.+...+.. ..+++|+||||||||++|+++|..+.... +.+...
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred ccccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 456677899999999999888877763 24799999999999999999999884321 111110
Q ss_pred hhc--cc---c--ccchHH-------------------------------------------------HHHHHHH-----
Q 007255 359 ELY--SM---Y--VGESEA-------------------------------------------------LLRNTFQ----- 377 (611)
Q Consensus 359 ~~~--~~---~--~g~~~~-------------------------------------------------~~~~~~~----- 377 (611)
... .. + .+.... ....+|.
T Consensus 98 ~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~ 177 (604)
T 3k1j_A 98 PEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD 177 (604)
T ss_dssp TTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC
T ss_pred cccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec
Confidence 000 00 0 000000 0111111
Q ss_pred ------------------HHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCC---------------
Q 007255 378 ------------------RARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL--------------- 424 (611)
Q Consensus 378 ------------------~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--------------- 424 (611)
......+.+|||||++.+- ....+.|+..|+.-
T Consensus 178 ~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~--------------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~ 243 (604)
T 3k1j_A 178 PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS--------------LKMQQSLLTAMQEKKFPITGQSEMSSGAM 243 (604)
T ss_dssp CC----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC--------------HHHHHHHHHHHHHSEECCBCSCTTSGGGG
T ss_pred hhhcCCccccccccccCceeeecCCCEEEEechhhCC--------------HHHHHHHHHHHHcCcEEeccccccccccc
Confidence 0112345699999999872 34667777777521
Q ss_pred ----CCCCCeEEEEecCCC--cccchhccCCCCcc---ceeecCCC---CHHHHHHHHHHHhcC------CCCCCcccHH
Q 007255 425 ----EQAKGILVLAATNRP--HAIDAALMRPGRFD---LVLYVPPP---DLEARHEILRVHTRN------MKVGDDVDLR 486 (611)
Q Consensus 425 ----~~~~~~~vI~~tn~~--~~ld~al~r~gRf~---~~i~~~~p---~~~~r~~il~~~~~~------~~~~~~~~~~ 486 (611)
..+.++.||++||+. +.++++|++ ||. ..+.|+.. +.+....+++...+. ....++..+.
T Consensus 244 l~~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~ 321 (604)
T 3k1j_A 244 VRTEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVE 321 (604)
T ss_dssp CBCSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHH
T ss_pred CCCCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHH
Confidence 112367899999986 679999999 986 45666532 345566666543322 1222334455
Q ss_pred HHHHhC---CCC------CHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCCCCCHHHHHHHHH
Q 007255 487 SIAEET---ELF------TGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSLKPALTKEEIDSYSS 547 (611)
Q Consensus 487 ~la~~~---~g~------s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~ 547 (611)
.|.+.+ .|- +.+++.++++.|...|..+. ...++.+|+..++... ..+..+..+.|..
T Consensus 322 ~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~--~~~I~~edv~~A~~~~-~~i~~~~~e~~l~ 388 (604)
T 3k1j_A 322 EIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKG--KKYVEREDVIEAVKMA-KPLEKQLADWYIE 388 (604)
T ss_dssp HHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred HHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcC--cccccHHHHHHHHHhh-hhhHHHHHHHHhc
Confidence 555533 452 68999999999887776543 4569999999999542 2333343444443
No 159
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.31 E-value=1.5e-12 Score=156.45 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=91.8
Q ss_pred cccccccCCCcccccccchhHHHHHHHHHh-----------------hccCCChhHHhhc---CCCCCCCcceeCCCCCC
Q 007255 277 TRGVTVEIPKVTWEDIGGLRDLKKKLQQAV-----------------EWPIKHSTAFSRL---GISPVRGALLHGPPGCS 336 (611)
Q Consensus 277 ~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~-----------------~~~~~~~~~~~~~---~~~~~~~~Ll~Gp~G~G 336 (611)
.+......|.++|++--....+.+.+.... ..+...++.-.-+ |+.+...++|+|+||+|
T Consensus 665 L~e~~~~~~~v~~~~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~G 744 (2050)
T 3cmu_A 665 MGHTTGAMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 744 (2050)
T ss_dssp ---------CCSTTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSS
T ss_pred HHhhhccccCCcHHHHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCcEEEEEcCCCCC
Confidence 334444567777764333444444443221 1122334444444 46777889999999999
Q ss_pred hHHHHHHHHHHh---CCcEEeecchhhcccc----cc--------chHHHHHHHHHHHHh----cCCcEEEEcccccccc
Q 007255 337 KTTLAKAAAHAA---EASFFSLSGAELYSMY----VG--------ESEALLRNTFQRARL----AAPSIIFFDEADVVGA 397 (611)
Q Consensus 337 KT~la~ala~~~---~~~~~~~~~~~~~~~~----~g--------~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~ 397 (611)
||++|..+|..+ +.++++++......+. .| ..+..+..++..++. ..|++|+||.+..++.
T Consensus 745 KTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 745 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred HHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhcc
Confidence 999999999876 4568888776554432 11 111223344444433 6789999999999986
Q ss_pred -cC--CCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 007255 398 -KR--GGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATN 437 (611)
Q Consensus 398 -~~--~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn 437 (611)
.. +..++.......|.+++++..|..+...-++.||+++.
T Consensus 825 ~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 825 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 22 11111111233455778777787777777788876654
No 160
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.30 E-value=9.2e-13 Score=117.40 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=78.8
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccccccchHH
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEA 370 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g~~~~ 370 (611)
+++|.+...+.+.+.+.... ....++||+||||||||++|++++...+ +++.++++++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 46788888777777765311 2345799999999999999999999888 99999988775533
Q ss_pred HHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 007255 371 LLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRP 439 (611)
Q Consensus 371 ~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 439 (611)
....+..+ .+++|||||+|.+. ......|+..|+.. ...++.+|+|||.+
T Consensus 67 -~~~~~~~a---~~~~l~lDei~~l~--------------~~~q~~Ll~~l~~~-~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKA---EGGVLYVGDIAQYS--------------RNIQTGITFIIGKA-ERCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHT---TTSEEEEEECTTCC--------------HHHHHHHHHHHHHH-TTTTCEEEEEEEEC
T ss_pred -hhhHHHhC---CCCeEEEeChHHCC--------------HHHHHHHHHHHHhC-CCCCEEEEEecCCC
Confidence 34444443 35699999999872 23456666666532 24567888888864
No 161
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.26 E-value=9.1e-11 Score=123.70 Aligned_cols=224 Identities=13% Similarity=0.069 Sum_probs=141.7
Q ss_pred ccccccchhHHHHHHHHHh-hccCCChhHHhhcCC-CCCCCcce--eCCCCCChHHHHHHHHHHh---------CCcEEe
Q 007255 288 TWEDIGGLRDLKKKLQQAV-EWPIKHSTAFSRLGI-SPVRGALL--HGPPGCSKTTLAKAAAHAA---------EASFFS 354 (611)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~-~~~~~~~~~~~~~~~-~~~~~~Ll--~Gp~G~GKT~la~ala~~~---------~~~~~~ 354 (611)
..+.++|.+...+.+.+.+ ..... +. ..+..+++ +||||+|||++++++++.+ +..++.
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 3467899998888888776 42111 10 23457899 9999999999999999876 456677
Q ss_pred ecchhhcc------c----------cccc-hHHHHHHHHHHHH-hcCCcEEEEcccccccccCCCCCCCCcchhHHHHHH
Q 007255 355 LSGAELYS------M----------YVGE-SEALLRNTFQRAR-LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLST 416 (611)
Q Consensus 355 ~~~~~~~~------~----------~~g~-~~~~~~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ 416 (611)
+++..... . ..+. .......+..... ...|.||+|||+|.+..... .....+..
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--------~~~~~l~~ 163 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--------IAAEDLYT 163 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--------SCHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--------cchHHHHH
Confidence 77532111 0 0011 1222333333332 24578999999998853210 01345555
Q ss_pred HHHHhcCCC-CC--CCeEEEEecCCCc---ccc---hhccCCCCccceeecCCCCHHHHHHHHHHHhcCC---CCCCccc
Q 007255 417 LLTEMDGLE-QA--KGILVLAATNRPH---AID---AALMRPGRFDLVLYVPPPDLEARHEILRVHTRNM---KVGDDVD 484 (611)
Q Consensus 417 ll~~l~~~~-~~--~~~~vI~~tn~~~---~ld---~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~---~~~~~~~ 484 (611)
++..++... .. .++.+|++|+.++ .++ +.+.+ |+...+.+++++.++..++++..+... ...++..
T Consensus 164 l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~ 241 (412)
T 1w5s_A 164 LLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRH 241 (412)
T ss_dssp HHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHH
T ss_pred HHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHH
Confidence 555554332 13 6788888888766 345 66666 666569999999999999998654321 1223445
Q ss_pred HHHHHHhCC------CCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Q 007255 485 LRSIAEETE------LFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDS 532 (611)
Q Consensus 485 ~~~la~~~~------g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~ 532 (611)
+..+++.+. | .+..+..++..+...+..+. ...++..++..++..
T Consensus 242 ~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~--~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 242 LELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMG--RDSLSEDLVRKAVSE 292 (412)
T ss_dssp HHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHH
Confidence 778888888 8 57788888888776665432 234666666666544
No 162
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.21 E-value=2.9e-11 Score=96.56 Aligned_cols=77 Identities=36% Similarity=0.591 Sum_probs=71.2
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCCC
Q 007255 458 VPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSLKPA 536 (611)
Q Consensus 458 ~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~~~~ 536 (611)
-.+||.++|.+||+.++++.++..++|++.||+.|+||||+||.++|++|+..|+++. ...|+.+||..++.++.|.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~--~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHccC
Confidence 4589999999999999999999889999999999999999999999999999999886 5689999999999888764
No 163
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.21 E-value=5.1e-11 Score=93.78 Aligned_cols=74 Identities=41% Similarity=0.697 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Q 007255 459 PPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSLK 534 (611)
Q Consensus 459 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~~ 534 (611)
|+||.++|.+||+.++++++...++++..||+.|+||||+||.++|++|+..++++. ...|+..||..++.++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~--~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--RVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Confidence 689999999999999999998889999999999999999999999999999999885 56899999999998764
No 164
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.20 E-value=1.7e-09 Score=135.26 Aligned_cols=129 Identities=20% Similarity=0.250 Sum_probs=92.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCC
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR 132 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~ 132 (611)
..+..+.||+|||||.+++.+|+.+|.+++.++|++-.+ ...+..+|..+.+. +++.++||++.+-.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-----GaW~cfDEfNrl~~-- 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-----GAWGCFDEFNRLEE-- 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-----TCEEEEETTTSSCH--
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-----CcEEEehhhhcCCH--
Confidence 357789999999999999999999999999999986433 23455666665543 67999999998743
Q ss_pred CCCchhhHHHHHHHHH-------HHhcC--------CCCCCCCCcEEEEEeecC----cccccHHhhccCCcceEEEccC
Q 007255 133 DHRREQDVRIASQLFT-------LMDSN--------KPSKTSVPHVVVVASTNR----VDAIDPALRRSGRFDAEVEVTV 193 (611)
Q Consensus 133 ~~~~~~~~~~~~~ll~-------~l~~~--------~~~~~~~~~v~ii~ttn~----~~~l~~~l~~~~Rf~~~i~~~~ 193 (611)
++++.+.. .+... .....-.+.+.+++|+|+ ...+++.++. || +.+.+..
T Consensus 671 --------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~ 739 (3245)
T 3vkg_A 671 --------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIK 739 (3245)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCS
T ss_pred --------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeC
Confidence 22222222 22111 111112345789999996 3489999998 88 4799999
Q ss_pred CCHHHHHHHHHH
Q 007255 194 PTAEERFEILKL 205 (611)
Q Consensus 194 p~~~~r~~Il~~ 205 (611)
||.+...+|+-.
T Consensus 740 Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 740 PDREMIAQVMLY 751 (3245)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999988887644
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.20 E-value=1.1e-10 Score=128.99 Aligned_cols=219 Identities=27% Similarity=0.324 Sum_probs=128.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEcccccc--
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH---LTVISPHSVH-- 90 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~---~~~v~~~~~~-- 90 (611)
+.+++++|++.+++.+...+.. ..+++|+||||||||+++++++..+... .+.+......
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~ 102 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN 102 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT
T ss_pred cccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc
Confidence 6789999999999888777642 3599999999999999999999988532 1222111100
Q ss_pred ccc-----ccchH-------------------------------------------------HHHHHHHHHHH-------
Q 007255 91 KAH-----VGESE-------------------------------------------------KALREAFSQAS------- 109 (611)
Q Consensus 91 ~~~-----~~~~~-------------------------------------------------~~l~~~f~~~~------- 109 (611)
... .+... .....+|....
T Consensus 103 ~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g 182 (604)
T 3k1j_A 103 MPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSG 182 (604)
T ss_dssp SCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC---
T ss_pred CCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcC
Confidence 000 00000 00111111000
Q ss_pred ------------hhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC---------------CCCCCc
Q 007255 110 ------------SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS---------------KTSVPH 162 (611)
Q Consensus 110 ------------~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---------------~~~~~~ 162 (611)
.......+++|||||++.+.+ ..+..|+..|+..... ...+.+
T Consensus 183 ~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~----------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~ 252 (604)
T 3k1j_A 183 GLGTPAHERVEPGMIHRAHKGVLFIDEIATLSL----------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCD 252 (604)
T ss_dssp -CCCCGGGGEECCHHHHTTTSEEEETTGGGSCH----------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECC
T ss_pred CccccccccccCceeeecCCCEEEEechhhCCH----------HHHHHHHHHHHcCcEEecccccccccccCCCCcccee
Confidence 000112467999999998743 5678888888753211 111246
Q ss_pred EEEEEeecCc--ccccHHhhccCCcc---eEEEccCC---CHHHHHHHHHHhhcCC------CCCCcccHHHHHHhc---
Q 007255 163 VVVVASTNRV--DAIDPALRRSGRFD---AEVEVTVP---TAEERFEILKLYTKKV------PLDANVDLEAIATSC--- 225 (611)
Q Consensus 163 v~ii~ttn~~--~~l~~~l~~~~Rf~---~~i~~~~p---~~~~r~~Il~~~~~~~------~~~~~~~~~~la~~~--- 225 (611)
+.+|++||+. +.++++|++ ||. ..+.++.. +.+....+++.+.... ..-.+..+..+....
T Consensus 253 ~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~ 330 (604)
T 3k1j_A 253 FVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKR 330 (604)
T ss_dssp CEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHT
T ss_pred EEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhh
Confidence 7899999986 689999999 885 45565442 4555666665443221 111122344444433
Q ss_pred cCC------ccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHH
Q 007255 226 NGY------VGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHAR 269 (611)
Q Consensus 226 ~g~------~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~ 269 (611)
.|- +.+++.++++.|...+..... ..++.+|+..+.
T Consensus 331 ~g~r~~l~~~~R~l~~llr~A~~~A~~~~~--------~~I~~edv~~A~ 372 (604)
T 3k1j_A 331 AGRKGHLTLRLRDLGGIVRAAGDIAVKKGK--------KYVEREDVIEAV 372 (604)
T ss_dssp TCSTTEEECCHHHHHHHHHHHHHHHHHTTC--------SSBCHHHHHHHH
T ss_pred hccccccccCHHHHHHHHHHHHHHHHhcCc--------ccccHHHHHHHH
Confidence 442 568889999988765543222 135566665554
No 166
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.20 E-value=4e-11 Score=96.51 Aligned_cols=85 Identities=29% Similarity=0.500 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCCCCCHH-
Q 007255 462 DLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSLKPALTKE- 540 (611)
Q Consensus 462 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~~~~~~~~- 540 (611)
|.++|.+||+.++++.++..++|++.||+.|+||||+||.++|++|+..|+++. ...|+..||..|+.++.+.....
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~--~~~i~~~df~~Al~~v~~~~~~~~ 79 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR--RKVATEKDFLKAVDKVISGYKKFS 79 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS--CSSBCHHHHHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc--cccCCHHHHHHHHHHHhcCccccc
Confidence 567899999999999999999999999999999999999999999999999885 45799999999999998876443
Q ss_pred HHHHHHHH
Q 007255 541 EIDSYSSF 548 (611)
Q Consensus 541 ~~~~~~~~ 548 (611)
....|..|
T Consensus 80 ~~~~y~~w 87 (88)
T 3vlf_B 80 STSRYMQY 87 (88)
T ss_dssp --------
T ss_pred chhHHhcc
Confidence 35667666
No 167
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.20 E-value=2.7e-11 Score=96.61 Aligned_cols=81 Identities=23% Similarity=0.476 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCCCCCHHH
Q 007255 462 DLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSLKPALTKEE 541 (611)
Q Consensus 462 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~ 541 (611)
|.++|.+||+.++++++...++++..||+.|+||||+||.++|++|+..++++. ..+|+..||..++.+++|+++ ++
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~--~~~i~~~df~~Al~~~~ps~~-~~ 78 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN--RYIVLAKDFEKAYKTVIKKDE-QE 78 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC--CSSBCHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCCcCHHHHHHHHHHHccCch-HH
Confidence 678999999999999998889999999999999999999999999999998875 467999999999999999988 66
Q ss_pred HHHH
Q 007255 542 IDSY 545 (611)
Q Consensus 542 ~~~~ 545 (611)
++.|
T Consensus 79 l~~y 82 (83)
T 3aji_B 79 HEFY 82 (83)
T ss_dssp ----
T ss_pred HHhc
Confidence 6555
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.17 E-value=8.2e-10 Score=116.36 Aligned_cols=209 Identities=14% Similarity=0.142 Sum_probs=126.4
Q ss_pred cccCCcHHHHHHHHHHH-HhhhhCchHHHhcCCCCCceEEE--EcCCCCcHHHHHHHHHHHh---------CCcEEEEcc
Q 007255 19 EAIGGNRAAVEALRELI-TFPLLYSSQAQKLGLKWPRGLLL--YGPPGTGKTSLVRAVVREC---------GAHLTVISP 86 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l-~~~~~~~~~~~~~g~~~~~~iLl--~Gp~GtGKT~la~~la~~l---------~~~~~~v~~ 86 (611)
+.++|.++.++.|.+.+ ....... ...+.+++| +||+|+|||++++.+++.+ +..++.+++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 67999999999999887 5421110 023568999 9999999999999999876 445677775
Q ss_pred cccccc--------------c--ccchHHH-HHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHH
Q 007255 87 HSVHKA--------------H--VGESEKA-LREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (611)
Q Consensus 87 ~~~~~~--------------~--~~~~~~~-l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~ 149 (611)
...... . .+..... +..+..... ...++.||+|||+|.+..... .....+..++..
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~llvlDe~~~l~~~~~----~~~~~l~~l~~~ 167 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLY---VENHYLLVILDEFQSMLSSPR----IAAEDLYTLLRV 167 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHH---HHTCEEEEEEESTHHHHSCTT----SCHHHHHHHHTH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH---hcCCeEEEEEeCHHHHhhccC----cchHHHHHHHHH
Confidence 321100 0 0111111 122221111 124588999999998854211 012445555666
Q ss_pred HhcCCCCCCCCCcEEEEEeecCcc---ccc---HHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCC---CCCcccHHH
Q 007255 150 MDSNKPSKTSVPHVVVVASTNRVD---AID---PALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVP---LDANVDLEA 220 (611)
Q Consensus 150 l~~~~~~~~~~~~v~ii~ttn~~~---~l~---~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~---~~~~~~~~~ 220 (611)
+....... ...++.+|++++.++ .++ +.+.+ ++...+.+++++.++..+++...+.... ...+..+..
T Consensus 168 ~~~~~~~~-~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 1w5s_A 168 HEEIPSRD-GVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLEL 244 (412)
T ss_dssp HHHSCCTT-SCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHH
T ss_pred HHhcccCC-CCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 65432100 013688888887654 344 66666 6665699999999999999987654211 112234667
Q ss_pred HHHhcc------CCccccHHHHHHHHHHHHh
Q 007255 221 IATSCN------GYVGADLEALCREATMSAV 245 (611)
Q Consensus 221 la~~~~------g~~~~dl~~l~~~a~~~a~ 245 (611)
++..+. |. .+.+..++..+...+.
T Consensus 245 i~~~~~~~~~~~G~-p~~~~~l~~~a~~~a~ 274 (412)
T 1w5s_A 245 ISDVYGEDKGGDGS-ARRAIVALKMACEMAE 274 (412)
T ss_dssp HHHHHCGGGTSCCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCc-HHHHHHHHHHHHHHHH
Confidence 777777 54 3456666666654443
No 169
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.04 E-value=3.5e-10 Score=104.72 Aligned_cols=99 Identities=13% Similarity=0.098 Sum_probs=61.5
Q ss_pred CCcccccccc----hhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh----CCcEEeec
Q 007255 285 PKVTWEDIGG----LRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----EASFFSLS 356 (611)
Q Consensus 285 ~~~~~~~i~g----~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----~~~~~~~~ 356 (611)
...+|+++.+ ++.+.+.+.+++.. +....+.+++|+||||||||+++++++..+ |..++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3456777664 44455555555542 233446789999999999999999999887 66777777
Q ss_pred chhhccccccchHH-HHHHHHHHHHhcCCcEEEEcccccc
Q 007255 357 GAELYSMYVGESEA-LLRNTFQRARLAAPSIIFFDEADVV 395 (611)
Q Consensus 357 ~~~~~~~~~g~~~~-~~~~~~~~a~~~~p~il~iDeid~l 395 (611)
..++...+...... .....+. ....|.+|+|||++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHH--HHHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHHhcCchHHHHHH--HhcCCCEEEEeCCCCC
Confidence 77665432211110 0001111 1236789999999754
No 170
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.98 E-value=2.8e-10 Score=90.36 Aligned_cols=80 Identities=21% Similarity=0.350 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhc-CCCCCHHHH
Q 007255 464 EARHEILRVHTRNMKVGDDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDSL-KPALTKEEI 542 (611)
Q Consensus 464 ~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~~-~~~~~~~~~ 542 (611)
++|.+||+.+++++++..++|++.||+.|+||||+||.++|++|+..++++. ...|+..||..++.++ .+..+.+++
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~--~~~i~~~df~~Al~~v~~~~~~~~~~ 78 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--RYVILQSDLEEAYATQVKTDNTVDKF 78 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHTTCC--------
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCCcCHHHHHHHHHHHHcCcCChHHH
Confidence 4689999999999998889999999999999999999999999999999885 4679999999999988 466666665
Q ss_pred HHH
Q 007255 543 DSY 545 (611)
Q Consensus 543 ~~~ 545 (611)
+.|
T Consensus 79 ~~y 81 (82)
T 2dzn_B 79 DFY 81 (82)
T ss_dssp ---
T ss_pred Hhh
Confidence 544
No 171
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.86 E-value=1.1e-09 Score=108.77 Aligned_cols=122 Identities=19% Similarity=0.235 Sum_probs=74.0
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHhCCc--EEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAEAS--FFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGA 397 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~ 397 (611)
|+++.+.++|+||||||||++|.++|...+.+ |+.+..++..+.+..+.+..+..+++.+.... +|+||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 44555667999999999999999999875544 55552233334444555666666776666544 999999999865
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhc
Q 007255 398 KRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAAL 446 (611)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al 446 (611)
.....+.. ....+.+.+++..|.++....++.+|+++| |...|+++
T Consensus 197 ~~~~~s~~--G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTS--GGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccccc--chHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 43221110 011244555666555444445677888888 55555544
No 172
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.84 E-value=2.4e-09 Score=95.70 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=66.2
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccccC
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKR 399 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~ 399 (611)
+...++|+||+|+|||+++++++..+ |...+.++..++... +....|++|+|||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-
Confidence 34579999999999999999999988 667888887776543 11235789999999875211
Q ss_pred CCCCCCCcchhHHHHHHHHHHhcCCCCCCCe-EEEEecC-CCcccc--hhccCCCCccceeec
Q 007255 400 GGSSSTSITVGERLLSTLLTEMDGLEQAKGI-LVLAATN-RPHAID--AALMRPGRFDLVLYV 458 (611)
Q Consensus 400 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-~vI~~tn-~~~~ld--~al~r~gRf~~~i~~ 458 (611)
..+.+-.+++.+ ...+.. ++| ||| .|+.+. +.+.+ |+..-..+
T Consensus 99 ----------~~~~l~~li~~~---~~~g~~~iii-ts~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 99 ----------EQALLFSIFNRF---RNSGKGFLLL-GSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp ----------HHHHHHHHHHHH---HHHTCCEEEE-EESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred ----------HHHHHHHHHHHH---HHcCCcEEEE-ECCCCHHHccccHHHHH--HHhcCeeE
Confidence 122233333333 233344 555 555 565443 66666 77644443
No 173
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.79 E-value=1.3e-07 Score=96.94 Aligned_cols=184 Identities=23% Similarity=0.233 Sum_probs=110.2
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccccc------
Q 007255 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK------ 91 (611)
Q Consensus 18 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~------ 91 (611)
-+.++|.++..+.|.+++.. | ..++++||+|+|||++++.+++..+ .+.+++.....
T Consensus 11 ~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHIT 73 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBC
T ss_pred hHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCC
Confidence 36789999999999887743 1 5899999999999999999999886 55665433210
Q ss_pred ---------ccccc---------------------hHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHH
Q 007255 92 ---------AHVGE---------------------SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVR 141 (611)
Q Consensus 92 ---------~~~~~---------------------~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~ 141 (611)
..... ....+..++..........+|.+|+|||++.+..... .....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---~~~~~ 150 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---RGGKE 150 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT---TTTHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc---cchhh
Confidence 00000 0011222332222211111388999999998854100 01123
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccH---------HhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCC
Q 007255 142 IASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDP---------ALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPL 212 (611)
Q Consensus 142 ~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~---------~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~ 212 (611)
+...+...++.. .++.+|.++.....+.. .+. +|+...+.+++.+.++..+++...+...+.
T Consensus 151 ~~~~L~~~~~~~-------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~ 221 (350)
T 2qen_A 151 LLALFAYAYDSL-------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNL 221 (350)
T ss_dssp HHHHHHHHHHHC-------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhc-------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 445555555542 13555665544221111 122 365568999999999999999876654433
Q ss_pred C-CcccHHHHHHhccCCcc
Q 007255 213 D-ANVDLEAIATSCNGYVG 230 (611)
Q Consensus 213 ~-~~~~~~~la~~~~g~~~ 230 (611)
. ....+..+...+.|+..
T Consensus 222 ~~~~~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 222 DVPENEIEEAVELLDGIPG 240 (350)
T ss_dssp CCCHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 2 23356777888888754
No 174
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.78 E-value=6.1e-09 Score=96.29 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=55.5
Q ss_pred ccccccCC----cHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEccc
Q 007255 16 KAEEAIGG----NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----GAHLTVISPH 87 (611)
Q Consensus 16 ~~~~~i~G----~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~~ 87 (611)
.+|+++++ ++.+++.+.+++.. +....+.+++|+||+|||||+++++++..+ |..++.++..
T Consensus 7 ~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp CCSSSCCCCSHHHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred CccccccCCCHHHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 35666665 44444444444432 223346799999999999999999999877 5555555554
Q ss_pred ccccccccchHH-HHHHHHHHHHhhhhcCCCeEEEEcccccc
Q 007255 88 SVHKAHVGESEK-ALREAFSQASSHALSGKPSVVFIDEIDAL 128 (611)
Q Consensus 88 ~~~~~~~~~~~~-~l~~~f~~~~~~~~~~~~~il~IDeid~l 128 (611)
++.......... .....+.. ..++.+|+|||++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~------~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 77 DLIFRLKHLMDEGKDTKFLKT------VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHTCCSHHHHH------HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHhcCchHHHHHHH------hcCCCEEEEeCCCCC
Confidence 443211100000 00011111 124779999999743
No 175
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.75 E-value=3e-08 Score=103.26 Aligned_cols=194 Identities=19% Similarity=0.235 Sum_probs=113.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEcccccccccc-
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG---AHLTVISPHSVHKAHV- 94 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~---~~~~~v~~~~~~~~~~- 94 (611)
..++|.....+.+.+.+... .....+++++|++|||||++++++..... .+|+.++|+.+.....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 45777777666666655431 12346899999999999999999988764 6899999987543210
Q ss_pred ----cch----H---HHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCC-----CC
Q 007255 95 ----GES----E---KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KT 158 (611)
Q Consensus 95 ----~~~----~---~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~ 158 (611)
|.. . ......|+.+ .+++||||||+.|.. ..+..|+..++..... ..
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a-------~~gtlfldei~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~ 268 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELA-------DGGTLFLDEIGELSL----------EAQAKLLRVIESGKFYRLGGRKE 268 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHT-------TTSEEEEESGGGCCH----------HHHHHHHHHHHHSEECCBTCCSB
T ss_pred HHhcCCCCCCCCCcccccCCceeeC-------CCcEEEEcChhhCCH----------HHHHHHHHHHhcCcEEeCCCCce
Confidence 000 0 0001122222 367999999998854 6788899998863211 11
Q ss_pred CCCcEEEEEeecCc-------ccccHHhhccCCcc-eEEEccCCC--HHHHHHHHHHhhcC----CCCC-Cccc---HHH
Q 007255 159 SVPHVVVVASTNRV-------DAIDPALRRSGRFD-AEVEVTVPT--AEERFEILKLYTKK----VPLD-ANVD---LEA 220 (611)
Q Consensus 159 ~~~~v~ii~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~--~~~r~~Il~~~~~~----~~~~-~~~~---~~~ 220 (611)
...++.+|++||.. ..+.+.+.. |+. ..|.+|+.. .++...++.+++.. .... .... +..
T Consensus 269 ~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 346 (387)
T 1ny5_A 269 IEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQEL 346 (387)
T ss_dssp EECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHH
T ss_pred eeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 12357899999873 133444443 442 345555553 25555566655432 2211 1122 232
Q ss_pred HHHhccCCc--cccHHHHHHHHHHHH
Q 007255 221 IATSCNGYV--GADLEALCREATMSA 244 (611)
Q Consensus 221 la~~~~g~~--~~dl~~l~~~a~~~a 244 (611)
+.. ..|. -++|++++..++..+
T Consensus 347 l~~--~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 347 LLS--YPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp HHH--SCCTTHHHHHHHHHHHHHHHC
T ss_pred HHh--CCCCcHHHHHHHHHHHHHHhC
Confidence 222 3343 368888888877644
No 176
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.75 E-value=8.1e-08 Score=98.66 Aligned_cols=183 Identities=17% Similarity=0.211 Sum_probs=110.0
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccc-----c--
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH-----K-- 91 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~-----~-- 91 (611)
+.++|.++..+.|.+ +.. ..++++||+|+|||++++.+++.++...+.+++.... .
T Consensus 13 ~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHH
T ss_pred HHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHH
Confidence 568999999988877 521 4899999999999999999999987777777765420 0
Q ss_pred ccccc---------------------------------------hHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCC
Q 007255 92 AHVGE---------------------------------------SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR 132 (611)
Q Consensus 92 ~~~~~---------------------------------------~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~ 132 (611)
..... ....+..++....... . +|.+|+|||++.+....
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQAS-K-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTC-S-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcC-C-CCeEEEEECHHHhhccC
Confidence 00000 0011223333322211 1 38899999999886421
Q ss_pred CCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccH---------HhhccCCcceEEEccCCCHHHHHHHH
Q 007255 133 DHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDP---------ALRRSGRFDAEVEVTVPTAEERFEIL 203 (611)
Q Consensus 133 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~---------~l~~~~Rf~~~i~~~~p~~~~r~~Il 203 (611)
.. .+...+...++.. .++.+|.+++....+.. .+ .+|+...+.+++++.++..+++
T Consensus 154 ~~------~~~~~l~~~~~~~-------~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 154 GV------NLLPALAYAYDNL-------KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp TC------CCHHHHHHHHHHC-------TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHH
T ss_pred ch------hHHHHHHHHHHcC-------CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHH
Confidence 00 1233333344432 13556666654322221 12 2365568999999999999999
Q ss_pred HHhhcCCCCCCcccHHHHHHhccCCccccHHHHH
Q 007255 204 KLYTKKVPLDANVDLEAIATSCNGYVGADLEALC 237 (611)
Q Consensus 204 ~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~ 237 (611)
...+.......+ +...+...+.|+... +..++
T Consensus 219 ~~~~~~~~~~~~-~~~~i~~~t~G~P~~-l~~~~ 250 (357)
T 2fna_A 219 RRGFQEADIDFK-DYEVVYEKIGGIPGW-LTYFG 250 (357)
T ss_dssp HHHHHHHTCCCC-CHHHHHHHHCSCHHH-HHHHH
T ss_pred HHHHHHcCCCCC-cHHHHHHHhCCCHHH-HHHHH
Confidence 876643232222 237888888887542 44443
No 177
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.74 E-value=1.5e-08 Score=95.43 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=46.9
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccccch-HHHHHHHHHHHHhcCCcEEEEcccccc
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGES-EALLRNTFQRARLAAPSIIFFDEADVV 395 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~p~il~iDeid~l 395 (611)
.+++|+||||||||++|++++.++ +.+++.++++++........ ...+..++.... .+++|+|||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 689999999999999999999988 67788888776654322110 001122233332 3459999999765
No 178
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.74 E-value=4.8e-07 Score=92.60 Aligned_cols=191 Identities=20% Similarity=0.195 Sum_probs=114.7
Q ss_pred CcccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc----
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY---- 361 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~---- 361 (611)
....+.++|.+...+.|.+.+.. + +.++++||+|+|||++++.+++..+ ++.+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 33456788999888888887652 2 4799999999999999999999876 4555443221
Q ss_pred --------c---ccc-------------------------cchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCC
Q 007255 362 --------S---MYV-------------------------GESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST 405 (611)
Q Consensus 362 --------~---~~~-------------------------g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~ 405 (611)
. ... ......+..+...+....|.+|+|||++.+.....
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----- 145 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----- 145 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-----
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-----
Confidence 0 000 01122222222223323488999999998853100
Q ss_pred CcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccc---------hhccCCCCccceeecCCCCHHHHHHHHHHHhcC
Q 007255 406 SITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAID---------AALMRPGRFDLVLYVPPPDLEARHEILRVHTRN 476 (611)
Q Consensus 406 ~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld---------~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~ 476 (611)
.....+...|-..++. ..++.+|+|+.....+. ..+. ||+...+.+++.+.++..+++...+..
T Consensus 146 --~~~~~~~~~L~~~~~~---~~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~ 218 (350)
T 2qen_A 146 --RGGKELLALFAYAYDS---LPNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFRE 218 (350)
T ss_dssp --TTTHHHHHHHHHHHHH---CTTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred --cchhhHHHHHHHHHHh---cCCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHH
Confidence 0112333333333332 23566666655432111 1222 466678999999999999999876654
Q ss_pred CCCC-CcccHHHHHHhCCCCCHHHHHHHHHH
Q 007255 477 MKVG-DDVDLRSIAEETELFTGAELEGLCRE 506 (611)
Q Consensus 477 ~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~ 506 (611)
.... ++..+..+...+.|+ +.-+..++..
T Consensus 219 ~~~~~~~~~~~~i~~~tgG~-P~~l~~~~~~ 248 (350)
T 2qen_A 219 VNLDVPENEIEEAVELLDGI-PGWLVVFGVE 248 (350)
T ss_dssp TTCCCCHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 3332 334567888889885 5566666543
No 179
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.73 E-value=2.1e-08 Score=89.49 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=45.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEcccccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDAL 128 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l 128 (611)
+...++|+||+|+|||+++++++..+ |...+.++..++... . + ..++.+|+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~----------~-~--------~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT----------D-A--------AFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----------G-G--------GGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----------H-H--------HhCCCEEEEeCcccc
Confidence 45789999999999999999999987 666777777665443 0 0 123779999999875
Q ss_pred CC
Q 007255 129 CP 130 (611)
Q Consensus 129 ~~ 130 (611)
..
T Consensus 96 ~~ 97 (149)
T 2kjq_A 96 GN 97 (149)
T ss_dssp CS
T ss_pred Ch
Confidence 43
No 180
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.73 E-value=1.4e-08 Score=80.85 Aligned_cols=77 Identities=32% Similarity=0.509 Sum_probs=68.6
Q ss_pred EccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHH
Q 007255 190 EVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHAR 269 (611)
Q Consensus 190 ~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~ 269 (611)
.-.+|+.++|.+||+.++++.++..++++..++..|.||+|.||.++|++|...++++.. ..++.+||..+.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~--------~~I~~~df~~Al 78 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR--------VHVTQEDFEMAV 78 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC--------SEECHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC--------CCCCHHHHHHHH
Confidence 457899999999999999999888889999999999999999999999999999988652 468999999988
Q ss_pred hccCC
Q 007255 270 SVVGP 274 (611)
Q Consensus 270 ~~i~~ 274 (611)
..+.|
T Consensus 79 ~~v~p 83 (86)
T 2krk_A 79 AKVMQ 83 (86)
T ss_dssp HHHHC
T ss_pred HHHcc
Confidence 77654
No 181
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.70 E-value=1.3e-08 Score=95.36 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=78.2
Q ss_pred CcceeCCCCCChHHHHHHHHHHh--------C-CcEEeecchhhccccc----------cc-----hHHHHHHHHHHHHh
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAA--------E-ASFFSLSGAELYSMYV----------GE-----SEALLRNTFQRARL 381 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~--------~-~~~~~~~~~~~~~~~~----------g~-----~~~~~~~~~~~a~~ 381 (611)
-.|++|+||+|||++|.+.+... | .+++..+..++..... .. ....+...+.. ..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-PE 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-GG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-cc
Confidence 46899999999999998865442 3 5565555554432221 11 11122222111 22
Q ss_pred cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCC
Q 007255 382 AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPP 461 (611)
Q Consensus 382 ~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p 461 (611)
..++||+|||++.+++.+..... . . .++..++. .....+-+|.+|+.++.++.++++ |++..++++.|
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e----~-~----rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSK----I-P----ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCC----C-C----HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccch----h-H----HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 44779999999999765432111 1 1 24445542 234456677788889999999988 99999998876
Q ss_pred CHH
Q 007255 462 DLE 464 (611)
Q Consensus 462 ~~~ 464 (611)
...
T Consensus 154 ~~~ 156 (199)
T 2r2a_A 154 KMG 156 (199)
T ss_dssp SSC
T ss_pred ccC
Confidence 543
No 182
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.70 E-value=5.4e-08 Score=100.98 Aligned_cols=209 Identities=19% Similarity=0.118 Sum_probs=117.3
Q ss_pred ccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHH-HHHhCCcEEeec-c---hhhcccccc
Q 007255 292 IGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAA-AHAAEASFFSLS-G---AELYSMYVG 366 (611)
Q Consensus 292 i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~al-a~~~~~~~~~~~-~---~~~~~~~~g 366 (611)
|.|++.+|+.+.-.+...... .+..-++||.|+||| ||++|+++ +..+....+... . ..+.....+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 789999998887776541111 122237999999999 99999999 776544333211 0 111111000
Q ss_pred c--hHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCC-------CCCCCeEEEEecC
Q 007255 367 E--SEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL-------EQAKGILVLAATN 437 (611)
Q Consensus 367 ~--~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------~~~~~~~vI~~tn 437 (611)
. .. .-...+.. .+..|+|+||++.+ ....+..|+..|+.- .-+.++.||+|+|
T Consensus 286 ~tG~~-~~~G~l~L---AdgGvl~lDEIn~~--------------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 286 DRGWA-LRAGAAVL---ADGGILAVDHLEGA--------------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp SSSEE-EEECHHHH---TTTSEEEEECCTTC--------------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred CCCcc-cCCCeeEE---cCCCeeehHhhhhC--------------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 0 00 00001111 23359999999876 356778888888631 1245789999999
Q ss_pred CCc-----------ccchhccCCCCcccee-ecCCCCHHH-------------HHHHHHHHhc--CCCC-CCcccHHHHH
Q 007255 438 RPH-----------AIDAALMRPGRFDLVL-YVPPPDLEA-------------RHEILRVHTR--NMKV-GDDVDLRSIA 489 (611)
Q Consensus 438 ~~~-----------~ld~al~r~gRf~~~i-~~~~p~~~~-------------r~~il~~~~~--~~~~-~~~~~~~~la 489 (611)
..+ .|+++++. |||..+ ..+.|+.+. ..+.+. +.+ .... .++...+.+.
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~ 424 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLE 424 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHH
T ss_pred cccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHH
Confidence 764 68889998 998543 345555433 112221 222 1111 1111111111
Q ss_pred -----------H------hCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Q 007255 490 -----------E------ETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDS 532 (611)
Q Consensus 490 -----------~------~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~ 532 (611)
. ..-|.|++.+..+++.|...|..+. ...++.+|+..|+.-
T Consensus 425 ~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g--R~~V~~eDV~~Ai~L 482 (506)
T 3f8t_A 425 HWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL--SDDVEPEDVDIAAEL 482 (506)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHH
T ss_pred HHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcC--cCCCCHHHHHHHHHH
Confidence 0 2347888888888888877776654 445777777777643
No 183
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.69 E-value=3.8e-08 Score=102.10 Aligned_cols=151 Identities=15% Similarity=0.063 Sum_probs=87.1
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHH-HHHhCCcEEEEcc-c---ccccc
Q 007255 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAV-VRECGAHLTVISP-H---SVHKA 92 (611)
Q Consensus 18 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~l-a~~l~~~~~~v~~-~---~~~~~ 92 (611)
+..|.|++.+|..|.-.+..... . .+...|+||.|+||| ||++++++ ++.+....+.... + .+...
T Consensus 212 IapI~G~e~vK~aLll~L~GG~~--k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s 282 (506)
T 3f8t_A 212 IAPLPGAEEVGKMLALQLFSCVG--K------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV 282 (506)
T ss_dssp HCCSTTCHHHHHHHHHHHTTCCS--S------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE
T ss_pred hcccCCCHHHHHHHHHHHcCCcc--c------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE
Confidence 34488999887777655422100 0 122348999999999 99999999 6665443322111 0 01100
Q ss_pred cccchHHHH-HHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC---CCCCcEEEEEe
Q 007255 93 HVGESEKAL-REAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK---TSVPHVVVVAS 168 (611)
Q Consensus 93 ~~~~~~~~l-~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~---~~~~~v~ii~t 168 (611)
..+.+...+ ...+. ....+++|+||++.+.+ ..+..|++.|++..-+. ..+.++.+|+|
T Consensus 283 ~r~~tG~~~~~G~l~-------LAdgGvl~lDEIn~~~~----------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA 345 (506)
T 3f8t_A 283 LKEDRGWALRAGAAV-------LADGGILAVDHLEGAPE----------PHRWALMEAMDKGTVTVDGIALNARCAVLAA 345 (506)
T ss_dssp EEESSSEEEEECHHH-------HTTTSEEEEECCTTCCH----------HHHHHHHHHHHHSEEEETTEEEECCCEEEEE
T ss_pred EEcCCCcccCCCeeE-------EcCCCeeehHhhhhCCH----------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEE
Confidence 000000000 00111 12357999999998754 67889999998632111 22346899999
Q ss_pred ecCcc-----------cccHHhhccCCcceEE-EccCCCH
Q 007255 169 TNRVD-----------AIDPALRRSGRFDAEV-EVTVPTA 196 (611)
Q Consensus 169 tn~~~-----------~l~~~l~~~~Rf~~~i-~~~~p~~ 196 (611)
+|+.. .+++++++ ||+..+ .++.|+.
T Consensus 346 ~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~ 383 (506)
T 3f8t_A 346 INPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRP 383 (506)
T ss_dssp ECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC----
T ss_pred eCcccccCCCCCccccCCChHHhh--heeeEEEecCCCCh
Confidence 99964 78899998 997543 4455543
No 184
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.69 E-value=3.1e-08 Score=77.63 Aligned_cols=73 Identities=34% Similarity=0.555 Sum_probs=65.5
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhc
Q 007255 192 TVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSV 271 (611)
Q Consensus 192 ~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~ 271 (611)
|+|+.++|.+||+.++++.....++++..++..|+||+|.||.++|++|...++++.. ..++.+||..+...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~--------~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR--------VHVTQEDFEMAVAK 72 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC--------SEECHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHH
Confidence 6899999999999999999888889999999999999999999999999999988643 35888999888765
Q ss_pred c
Q 007255 272 V 272 (611)
Q Consensus 272 i 272 (611)
+
T Consensus 73 v 73 (78)
T 3kw6_A 73 V 73 (78)
T ss_dssp H
T ss_pred H
Confidence 4
No 185
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.68 E-value=3.2e-08 Score=102.98 Aligned_cols=182 Identities=16% Similarity=0.194 Sum_probs=104.6
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccc-------------cccchHHHHHHHHHHHHhcCCcEE
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM-------------YVGESEALLRNTFQRARLAAPSII 387 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~-------------~~g~~~~~~~~~~~~a~~~~p~il 387 (611)
..+++++|++||||+++|+++.... +.+|+.++++.+... +.|.... ....|..| ...+|
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a---~~gtl 235 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELA---DGGTL 235 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHT---TTSEE
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeC---CCcEE
Confidence 3468999999999999999999876 478999998765331 1111100 11223333 34599
Q ss_pred EEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCCc-------ccchhccCCCC
Q 007255 388 FFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE---------QAKGILVLAATNRPH-------AIDAALMRPGR 451 (611)
Q Consensus 388 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~~tn~~~-------~ld~al~r~gR 451 (611)
|+|||+.+ ....+..|+..|+.-. ...++.+|+|||..- .+.+.|.. |
T Consensus 236 fldei~~l--------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--r 299 (387)
T 1ny5_A 236 FLDEIGEL--------------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--R 299 (387)
T ss_dssp EEESGGGC--------------CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--H
T ss_pred EEcChhhC--------------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--h
Confidence 99999987 2456777887775311 112578999999742 12223322 3
Q ss_pred cc-ceeecCCCCH--HHHHHHHHHHhc----CCCCC----CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccc
Q 007255 452 FD-LVLYVPPPDL--EARHEILRVHTR----NMKVG----DDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATA 520 (611)
Q Consensus 452 f~-~~i~~~~p~~--~~r~~il~~~~~----~~~~~----~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~ 520 (611)
+. ..|.+|+... ++...+++.+++ ++... ++..+..|.....--+-++++++++.+...+- ...
T Consensus 300 l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~-----~~~ 374 (387)
T 1ny5_A 300 LGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSE-----GKF 374 (387)
T ss_dssp HTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCC-----SSE
T ss_pred hcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC-----CCc
Confidence 33 2344443322 344444444332 22222 22334555554432245688888888776542 235
Q ss_pred ccHHHHHHHH
Q 007255 521 VRNRHFQTVK 530 (611)
Q Consensus 521 i~~~~~~~~l 530 (611)
|+..|+...+
T Consensus 375 i~~~~l~~~~ 384 (387)
T 1ny5_A 375 IDRGELSCLV 384 (387)
T ss_dssp ECHHHHHHHC
T ss_pred CcHHHCcHhh
Confidence 7777765443
No 186
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.67 E-value=2.2e-07 Score=95.42 Aligned_cols=188 Identities=16% Similarity=0.074 Sum_probs=113.2
Q ss_pred cccccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc-----
Q 007255 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY----- 361 (611)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~----- 361 (611)
...+.++|.+...+.|.+ +.. ..++++||+|+|||++++.+++..+..++.+++....
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 345678898888887777 541 3689999999999999999999987777777655320
Q ss_pred c---------------------------cc-----cc---c------hHHHHHHHHHHHHhc--CCcEEEEccccccccc
Q 007255 362 S---------------------------MY-----VG---E------SEALLRNTFQRARLA--APSIIFFDEADVVGAK 398 (611)
Q Consensus 362 ~---------------------------~~-----~g---~------~~~~~~~~~~~a~~~--~p~il~iDeid~l~~~ 398 (611)
. .. .+ . ....+..++...... .|.+|+|||++.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 0 00 00 0 011234445444432 3889999999988531
Q ss_pred CCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchh-----cc--CCCCccceeecCCCCHHHHHHHHH
Q 007255 399 RGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAA-----LM--RPGRFDLVLYVPPPDLEARHEILR 471 (611)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~a-----l~--r~gRf~~~i~~~~p~~~~r~~il~ 471 (611)
. +.. ....+..+... ..++.+|+|++....+... .. -.||+...+.+++.+.++..+++.
T Consensus 153 ~------~~~-~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~ 219 (357)
T 2fna_A 153 R------GVN-LLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLR 219 (357)
T ss_dssp T------TCC-CHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHH
T ss_pred C------chh-HHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHH
Confidence 0 001 11222333222 1356666666654322211 00 124666789999999999999998
Q ss_pred HHhcCCCCCCcccHHHHHHhCCCCCHHHHHHHHHH
Q 007255 472 VHTRNMKVGDDVDLRSIAEETELFTGAELEGLCRE 506 (611)
Q Consensus 472 ~~~~~~~~~~~~~~~~la~~~~g~s~~~i~~~~~~ 506 (611)
..+.......+ +...+...+.|+ +..+..++..
T Consensus 220 ~~~~~~~~~~~-~~~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 220 RGFQEADIDFK-DYEVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHTCCCC-CHHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHcCCCCC-cHHHHHHHhCCC-HHHHHHHHHH
Confidence 76543222222 237888899995 5566666554
No 187
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.66 E-value=4.9e-08 Score=100.79 Aligned_cols=191 Identities=18% Similarity=0.284 Sum_probs=113.0
Q ss_pred cccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEcccccccccccc
Q 007255 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--LTVISPHSVHKAHVGE 96 (611)
Q Consensus 19 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~--~~~v~~~~~~~~~~~~ 96 (611)
..++|.......+.+.+.... ....+++++|++||||+.+++++....+.. ++.++|..+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~-- 195 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELA-- 195 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTH--
T ss_pred ccccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHH--
Confidence 356777766666665543211 234679999999999999999999877543 99999987643211
Q ss_pred hHHHH---------------HHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCC----
Q 007255 97 SEKAL---------------REAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK---- 157 (611)
Q Consensus 97 ~~~~l---------------~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~---- 157 (611)
+..+ ...|+.+ .++.||+|||+.|.+ ..+..|+..++......
T Consensus 196 -~~~lfg~~~g~~tga~~~~~g~~~~a-------~~gtlfldei~~l~~----------~~Q~~Ll~~l~~~~~~~~g~~ 257 (368)
T 3dzd_A 196 -ESELFGHEKGAFTGALTRKKGKLELA-------DQGTLFLDEVGELDQ----------RVQAKLLRVLETGSFTRLGGN 257 (368)
T ss_dssp -HHHHHEECSCSSSSCCCCEECHHHHT-------TTSEEEEETGGGSCH----------HHHHHHHHHHHHSEECCBTCC
T ss_pred -HHHhcCccccccCCcccccCChHhhc-------CCCeEEecChhhCCH----------HHHHHHHHHHHhCCcccCCCC
Confidence 1100 1123322 356999999998855 67889999998643221
Q ss_pred -CCCCcEEEEEeecCc-------ccccHHhhccCCcc-eEEEccCCCH--HHHHHHHHHhhcCC----CCC-Cccc---H
Q 007255 158 -TSVPHVVVVASTNRV-------DAIDPALRRSGRFD-AEVEVTVPTA--EERFEILKLYTKKV----PLD-ANVD---L 218 (611)
Q Consensus 158 -~~~~~v~ii~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~~--~~r~~Il~~~~~~~----~~~-~~~~---~ 218 (611)
....++.+|++||.. ..+.+.+.. |+. ..|.+|+... ++...++++++... ... .... +
T Consensus 258 ~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 335 (368)
T 3dzd_A 258 QKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETK 335 (368)
T ss_dssp CBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHH
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 112256789998863 123344544 443 3567777655 56666666655332 111 1112 3
Q ss_pred HHHHHhc-cCCccccHHHHHHHHHHH
Q 007255 219 EAIATSC-NGYVGADLEALCREATMS 243 (611)
Q Consensus 219 ~~la~~~-~g~~~~dl~~l~~~a~~~ 243 (611)
+.+.... .| +-+++++++..++..
T Consensus 336 ~~L~~~~wpG-NvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 336 EYLMKQEWKG-NVRELKNLIERAVIL 360 (368)
T ss_dssp HHHHTCCCTT-HHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCc-HHHHHHHHHHHHHHh
Confidence 3333221 22 336777777776643
No 188
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.62 E-value=2.5e-08 Score=102.64 Aligned_cols=119 Identities=21% Similarity=0.227 Sum_probs=78.3
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhccccccchHHHHHHHHHHHHhcCCcEEEEcccccccc-c
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGA-K 398 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~-~ 398 (611)
+++++..++|+||||+|||+++++++...+..++.+..+.- . ....+. ...+..++++||++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~----~~~~lg------~~~q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R----LNFELG------VAIDQFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T----HHHHHG------GGTTCSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h----HHHHHH------HhcchhHHHHHHHHHHHHHH
Confidence 67778889999999999999999999998877665433221 0 000111 123445889999998764 2
Q ss_pred CCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCC
Q 007255 399 RGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPP 460 (611)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~ 460 (611)
++..... .. .....+...++| .+.++++||+++.+ +++++|||++..++...
T Consensus 233 r~l~~~~--~~--~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDLPSGQ--GI--NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCCCCS--HH--HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhccccC--cc--hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 2211111 00 012344455654 34577889999999 79999999998777744
No 189
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.57 E-value=2.4e-07 Score=85.57 Aligned_cols=115 Identities=15% Similarity=0.146 Sum_probs=65.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccC
Q 007255 50 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALC 129 (611)
Q Consensus 50 ~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~ 129 (611)
+++.+++||+||||||||+++.++|+.+...++.+..+. .... +.. .....|++|||+|.-
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f~----------l~~------l~~~kIiiLDEad~~- 115 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHFW----------LEP------LTDTKVAMLDDATTT- 115 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCGG----------GGG------GTTCSSEEEEEECHH-
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chhh----------hcc------cCCCCEEEEECCCch-
Confidence 445578999999999999999999999876543221110 0000 000 011338999999732
Q ss_pred CCCCCCchhhHHHHHHHHHHHhcCCC--CCCC-----CCcEEEEEeecCc---ccccHHhhccCCcceEEEccCC
Q 007255 130 PRRDHRREQDVRIASQLFTLMDSNKP--SKTS-----VPHVVVVASTNRV---DAIDPALRRSGRFDAEVEVTVP 194 (611)
Q Consensus 130 ~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~-----~~~v~ii~ttn~~---~~l~~~l~~~~Rf~~~i~~~~p 194 (611)
....+...+.+.+++... .... .....+|.|||.. +..-+.+.+ |+. .+.|+.|
T Consensus 116 --------~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~~ 179 (212)
T 1tue_A 116 --------CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPNA 179 (212)
T ss_dssp --------HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCSC
T ss_pred --------hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCCC
Confidence 111233456677776410 0000 0112467788872 233467877 874 6777644
No 190
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.57 E-value=1.8e-07 Score=87.53 Aligned_cols=129 Identities=15% Similarity=0.254 Sum_probs=76.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH--------hC-CcEEEEcccccccccc----------cchHH--HHHHHHHHHHhh
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRE--------CG-AHLTVISPHSVHKAHV----------GESEK--ALREAFSQASSH 111 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~--------l~-~~~~~v~~~~~~~~~~----------~~~~~--~l~~~f~~~~~~ 111 (611)
+...|++|+||||||+++...+.. .| .+++..+...+..... ..... .....++.+ .
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~- 82 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWI-K- 82 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHT-T-
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHh-h-
Confidence 357899999999999999886443 23 5555666554432221 00000 001111111 0
Q ss_pred hhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEc
Q 007255 112 ALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEV 191 (611)
Q Consensus 112 ~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~ 191 (611)
...++++||+|||++.+.+.+....+.. .++..++.... . .+-+|.++++++.++.+++. |+...+++
T Consensus 83 ~~~~~~~vliIDEAq~l~~~~~~~~e~~-----rll~~l~~~r~---~--~~~iil~tq~~~~l~~~lr~--ri~~~~~l 150 (199)
T 2r2a_A 83 KPENIGSIVIVDEAQDVWPARSAGSKIP-----ENVQWLNTHRH---Q--GIDIFVLTQGPKLLDQNLRT--LVRKHYHI 150 (199)
T ss_dssp SGGGTTCEEEETTGGGTSBCCCTTCCCC-----HHHHGGGGTTT---T--TCEEEEEESCGGGBCHHHHT--TEEEEEEE
T ss_pred ccccCceEEEEEChhhhccCccccchhH-----HHHHHHHhcCc---C--CeEEEEECCCHHHHhHHHHH--HhheEEEE
Confidence 1123578999999999976542222111 23344443221 1 34567777889999999988 99988888
Q ss_pred cCCC
Q 007255 192 TVPT 195 (611)
Q Consensus 192 ~~p~ 195 (611)
..|.
T Consensus 151 ~~~~ 154 (199)
T 2r2a_A 151 ASNK 154 (199)
T ss_dssp EECS
T ss_pred cCcc
Confidence 8764
No 191
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.53 E-value=2.4e-07 Score=87.13 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=44.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccccccccccch-HHHHHHHHHHHHhhhhcCCCeEEEEcccccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGES-EKALREAFSQASSHALSGKPSVVFIDEIDAL 128 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~~~~~-~~~l~~~f~~~~~~~~~~~~~il~IDeid~l 128 (611)
+.+++|+||||||||++++++++.+ +..++.+++..+........ ...+...+.... ++.+|+|||++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lilDei~~~ 127 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK------KVPVLMLDDLGAE 127 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH------HSSEEEEEEECCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc------CCCEEEEcCCCCC
Confidence 3799999999999999999999987 56777777665432211100 000112222222 1459999999765
Q ss_pred C
Q 007255 129 C 129 (611)
Q Consensus 129 ~ 129 (611)
.
T Consensus 128 ~ 128 (202)
T 2w58_A 128 A 128 (202)
T ss_dssp -
T ss_pred c
Confidence 3
No 192
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.51 E-value=3.3e-08 Score=99.52 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=46.2
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhC----CcEEeecchhhccccccch-HHHHHHHHHHHHhcCCcEEEEcccccc
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAE----ASFFSLSGAELYSMYVGES-EALLRNTFQRARLAAPSIIFFDEADVV 395 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~----~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~p~il~iDeid~l 395 (611)
..+++|+||||||||++|.++|.++. .+++.++.+++........ .......+... ..+++|+|||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 57899999999999999999998664 7787788777655332211 11112222222 24569999999654
No 193
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.49 E-value=1.9e-07 Score=74.84 Aligned_cols=75 Identities=25% Similarity=0.398 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhccCC
Q 007255 195 TAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGP 274 (611)
Q Consensus 195 ~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~ 274 (611)
|.++|.+||+.++++.++..++++..++..|+||+|.||.++|++|...++++.. ..++.+||..+...+.+
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~--------~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR--------KVATEKDFLKAVDKVIS 73 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC--------SSBCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc--------ccCCHHHHHHHHHHHhc
Confidence 5678999999999999998899999999999999999999999999999998753 25899999999988776
Q ss_pred ccc
Q 007255 275 SIT 277 (611)
Q Consensus 275 ~~~ 277 (611)
...
T Consensus 74 ~~~ 76 (88)
T 3vlf_B 74 GYK 76 (88)
T ss_dssp ---
T ss_pred Ccc
Confidence 543
No 194
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.48 E-value=1.4e-07 Score=87.24 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=28.8
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEe
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~ 354 (611)
+.+..+++|||||||||||++|.++|+.+...++.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 34445689999999999999999999998765543
No 195
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.47 E-value=1.4e-07 Score=97.31 Aligned_cols=165 Identities=19% Similarity=0.269 Sum_probs=95.8
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCc--EEeecchhhccc-------------cccchHHHHHHHHHHHHhcCCcEEEE
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEAS--FFSLSGAELYSM-------------YVGESEALLRNTFQRARLAAPSIIFF 389 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~--~~~~~~~~~~~~-------------~~g~~~~~~~~~~~~a~~~~p~il~i 389 (611)
..++++|++||||+.+|+++....+.. |+.++++.+... +.|.... -...|..+ ....||+
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~-~~g~~~~a---~~gtlfl 228 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTR-KKGKLELA---DQGTLFL 228 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCC-EECHHHHT---TTSEEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccc-cCChHhhc---CCCeEEe
Confidence 459999999999999999999887543 999999865432 1111000 01123333 3459999
Q ss_pred cccccccccCCCCCCCCcchhHHHHHHHHHHhcCCC--C-------CCCeEEEEecCCCc-------ccchhccCCCCcc
Q 007255 390 DEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--Q-------AKGILVLAATNRPH-------AIDAALMRPGRFD 453 (611)
Q Consensus 390 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~-------~~~~~vI~~tn~~~-------~ld~al~r~gRf~ 453 (611)
|||+.+ ....+..|+..|+.-. . .-.+.+|+|||..- .+.+.|.. |+.
T Consensus 229 dei~~l--------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~ 292 (368)
T 3dzd_A 229 DEVGEL--------------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLS 292 (368)
T ss_dssp ETGGGS--------------CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT
T ss_pred cChhhC--------------CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhC
Confidence 999987 2567788888876321 1 11467888988532 12223333 443
Q ss_pred -ceeecCCCCH--HHHHHHHHHHhcC----CCCC----CcccHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007255 454 -LVLYVPPPDL--EARHEILRVHTRN----MKVG----DDVDLRSIAEETELFTGAELEGLCREAGI 509 (611)
Q Consensus 454 -~~i~~~~p~~--~~r~~il~~~~~~----~~~~----~~~~~~~la~~~~g~s~~~i~~~~~~a~~ 509 (611)
..|.+|+... ++...+++.++++ +... ++..++.|.....--+-++++++++.+..
T Consensus 293 ~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 293 VFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp SEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHH
T ss_pred CeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 2466665544 4555555544432 2211 22335555555422245677777776654
No 196
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.46 E-value=1.6e-06 Score=88.76 Aligned_cols=174 Identities=13% Similarity=0.074 Sum_probs=113.3
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHh---CC-c--EEeecchhhccccccchHHHHHHHHHHHHh----cCCcEEEEccc
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EA-S--FFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEA 392 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~---~~-~--~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDei 392 (611)
.++.+|||||+|.||+..+++++..+ +. + ++.++ ++ ..++.+...+.. ....|++|||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~--~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---------PN--TDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---------TT--CCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---------CC--CCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 34679999999999999999998876 22 2 22222 11 123444444432 33569999999
Q ss_pred cc-ccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCC------cccchhccCCCCccceeecCCCCHHH
Q 007255 393 DV-VGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRP------HAIDAALMRPGRFDLVLYVPPPDLEA 465 (611)
Q Consensus 393 d~-l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~------~~ld~al~r~gRf~~~i~~~~p~~~~ 465 (611)
|. +. ....+.|++.++ ++++.+++|.+|+.+ ..+-+++.+ |.. ++.|.+++..+
T Consensus 86 ~~kl~--------------~~~~~aLl~~le--~p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~~-~~~~~~l~~~~ 146 (343)
T 1jr3_D 86 ENGPN--------------AAINEQLLTLTG--LLHDDLLLIVRGNKLSKAQENAAWFTALAN--RSV-QVTCQTPEQAQ 146 (343)
T ss_dssp SSCCC--------------TTHHHHHHHHHT--TCBTTEEEEEEESCCCTTTTTSHHHHHHTT--TCE-EEEECCCCTTH
T ss_pred CCCCC--------------hHHHHHHHHHHh--cCCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cce-EEEeeCCCHHH
Confidence 87 51 235678888888 455566666666553 346677776 665 78888999999
Q ss_pred HHHHHHHHhcCCCCC-CcccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Q 007255 466 RHEILRVHTRNMKVG-DDVDLRSIAEETELFTGAELEGLCREAGIVALREDISATAVRNRHFQTVKDS 532 (611)
Q Consensus 466 r~~il~~~~~~~~~~-~~~~~~~la~~~~g~s~~~i~~~~~~a~~~a~~~~~~~~~i~~~~~~~~l~~ 532 (611)
....++..++..++. ++..+..+++.+.| +-+++.+.+.....+. ....|+.+++...+..
T Consensus 147 l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~-----~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 147 LPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW-----PDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC-----TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHhh
Confidence 998888777665544 33457778887766 5666666666554432 1235676666665543
No 197
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.45 E-value=3.2e-07 Score=72.74 Aligned_cols=75 Identities=27% Similarity=0.360 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhccCC
Q 007255 195 TAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGP 274 (611)
Q Consensus 195 ~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~~ 274 (611)
|.++|.+||+.++++.+...++++..++..|+||+|.||.++|++|...++++.. ..++.+||..+...+.|
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~--------~~i~~~df~~Al~~~~p 73 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENR--------YIVLAKDFEKAYKTVIK 73 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC--------SSBCHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc--------CCcCHHHHHHHHHHHcc
Confidence 6789999999999999888889999999999999999999999999999887642 46899999999998888
Q ss_pred ccc
Q 007255 275 SIT 277 (611)
Q Consensus 275 ~~~ 277 (611)
+..
T Consensus 74 s~~ 76 (83)
T 3aji_B 74 KDE 76 (83)
T ss_dssp ---
T ss_pred Cch
Confidence 754
No 198
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.43 E-value=2.8e-07 Score=91.44 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=47.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEcccc
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEID 126 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~--~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid 126 (611)
|+.+...++|+||||||||+++..+|...+.. ++.+...+..+.+....+..+..+++..... + +|+||+++
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~-----~-LLVIDsI~ 192 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH-----R-VIVIDSLK 192 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC-----S-EEEEECCT
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC-----C-EEEEeccc
Confidence 44455678999999999999999999875544 4444112222222233344444444444321 3 99999999
Q ss_pred ccCCCC
Q 007255 127 ALCPRR 132 (611)
Q Consensus 127 ~l~~~~ 132 (611)
.+....
T Consensus 193 aL~~~~ 198 (331)
T 2vhj_A 193 NVIGAA 198 (331)
T ss_dssp TTC---
T ss_pred cccccc
Confidence 986543
No 199
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.40 E-value=6.4e-07 Score=90.07 Aligned_cols=70 Identities=26% Similarity=0.386 Sum_probs=43.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEcccccccccccch-HHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECG----AHLTVISPHSVHKAHVGES-EKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~----~~~~~v~~~~~~~~~~~~~-~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
+.+++|+||||||||++++++++.+. ..++.+++.++........ ...+...+.... +..+|+|||++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~------~~~lLiiDdig~ 225 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK------NVPVLILDDIGA 225 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH------TSSEEEEETCCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc------CCCEEEEcCCCC
Confidence 57999999999999999999998664 6777777665433211100 001111111111 245999999965
Q ss_pred c
Q 007255 128 L 128 (611)
Q Consensus 128 l 128 (611)
.
T Consensus 226 ~ 226 (308)
T 2qgz_A 226 E 226 (308)
T ss_dssp -
T ss_pred C
Confidence 4
No 200
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.37 E-value=1.9e-06 Score=83.54 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=24.9
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHhCC
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEA 350 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~~~ 350 (611)
++.++++||||||||||++|.++|+....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34568999999999999999999997643
No 201
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.26 E-value=4.7e-06 Score=85.24 Aligned_cols=148 Identities=16% Similarity=0.128 Sum_probs=100.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC---C-cEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECG---A-HLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~---~-~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
.+..+||+||+|+||++.++.+++.+. . ++..+... + ...++++.+.+...+..+...|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 457899999999999999999988662 1 22222111 1 122456666666666667788999999987
Q ss_pred -cCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC------cccccHHhhccCCcceEEEccCCCHHHHH
Q 007255 128 -LCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR------VDAIDPALRRSGRFDAEVEVTVPTAEERF 200 (611)
Q Consensus 128 -l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~------~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~ 200 (611)
+.. ...+.|+..++.. ++++++|.+++. ...+.+.+.+ |+ ..+.+.+++..+..
T Consensus 88 kl~~----------~~~~aLl~~le~p------~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 88 GPNA----------AINEQLLTLTGLL------HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLP 148 (343)
T ss_dssp CCCT----------THHHHHHHHHTTC------BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHH
T ss_pred CCCh----------HHHHHHHHHHhcC------CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHH
Confidence 643 3467788888752 223444444443 2467788887 76 48899999999999
Q ss_pred HHHHHhhcCCCCCCc-ccHHHHHHhccC
Q 007255 201 EILKLYTKKVPLDAN-VDLEAIATSCNG 227 (611)
Q Consensus 201 ~Il~~~~~~~~~~~~-~~~~~la~~~~g 227 (611)
..++..+...+..-+ ..+..++..++|
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 999988876665433 236666665554
No 202
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.25 E-value=5.6e-06 Score=80.16 Aligned_cols=121 Identities=17% Similarity=0.259 Sum_probs=68.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCC
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCP 130 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~ 130 (611)
++.++++|+||||||||+++.++|+.+.... .++.+. ... .+..+ ....|++.||....-.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~G-~vn~~~---~~f---------~l~~~------~~k~i~l~Ee~~~~~d 162 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFYG-CVNWTN---ENF---------PFNDC------VDKMVIWWEEGKMTAK 162 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCEE-ECCTTC---SSC---------TTGGG------SSCSEEEECSCCEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcccc-eeeccc---ccc---------ccccc------cccEEEEeccccchhH
Confidence 3457899999999999999999999865432 223321 000 11111 1234677777754321
Q ss_pred CCCCCchhhHHHHHHHHHHHhcCC-------CCCCCCCcEEEEEeecC-c----------ccccHHhhccCCcceEEEcc
Q 007255 131 RRDHRREQDVRIASQLFTLMDSNK-------PSKTSVPHVVVVASTNR-V----------DAIDPALRRSGRFDAEVEVT 192 (611)
Q Consensus 131 ~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~~~v~ii~ttn~-~----------~~l~~~l~~~~Rf~~~i~~~ 192 (611)
....+..+++... ..........+|.|||. + +...+.|++ |+ ..+.|+
T Consensus 163 -----------~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~ 228 (267)
T 1u0j_A 163 -----------VVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELT 228 (267)
T ss_dssp -----------THHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECC
T ss_pred -----------HHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECC
Confidence 1233444555211 00001123456777776 1 245688888 87 477887
Q ss_pred --------CCCHHHHHHHHH
Q 007255 193 --------VPTAEERFEILK 204 (611)
Q Consensus 193 --------~p~~~~r~~Il~ 204 (611)
+.+.++....|+
T Consensus 229 ~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 229 RRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp SCCCTTSCCCCHHHHHHHHH
T ss_pred CcCCcccCCCCHHHHHHHHH
Confidence 566666666665
No 203
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.20 E-value=8.8e-07 Score=91.07 Aligned_cols=118 Identities=18% Similarity=0.206 Sum_probs=73.3
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 007255 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (611)
Q Consensus 48 ~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~ 127 (611)
++++++..++|+||||+||||+++.++..++..++.+....- .....+. ...+..++++||++.
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg----------~~~q~~~~l~dd~~~ 227 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELG----------VAIDQFLVVFEDVKG 227 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHG----------GGTTCSCEEETTCCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHH----------HhcchhHHHHHHHHH
Confidence 477888899999999999999999999998776554322110 0000011 112345789999998
Q ss_pred cCC-CCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEc
Q 007255 128 LCP-RRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEV 191 (611)
Q Consensus 128 l~~-~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~ 191 (611)
+.. .+.............+.+.+++ .+.++.++|+++.+ +++.+++|++..+..
T Consensus 228 ~~~~~r~l~~~~~~~~~~~l~~~ldG---------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~ 282 (377)
T 1svm_A 228 TGGESRDLPSGQGINNLDNLRDYLDG---------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYS 282 (377)
T ss_dssp STTTTTTCCCCSHHHHHHTTHHHHHC---------SSCEEECCSSSCCE-EECCCCEEEEECSCC
T ss_pred HHHHHhhccccCcchHHHHHHHHhcC---------CCeEeeccCchhhH-HHhhcCcccChhHHh
Confidence 765 2211111111122445556664 24567889999988 677777787655444
No 204
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.11 E-value=2.4e-05 Score=71.70 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.7
Q ss_pred cceeCCCCCChHHHHHHHHHHhCCcE
Q 007255 327 ALLHGPPGCSKTTLAKAAAHAAEASF 352 (611)
Q Consensus 327 ~Ll~Gp~G~GKT~la~ala~~~~~~~ 352 (611)
+.|.||+|+||||+++.++..++..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 67899999999999999999886443
No 205
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.00 E-value=1.5e-05 Score=81.16 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=69.1
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccc----------------cccchHHHHHHHHHHHH
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM----------------YVGESEALLRNTFQRAR 380 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~a~ 380 (611)
|+++..-++++||||+|||+++..+|..+ +..++.++....... .....+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45566678999999999999999999775 556666665442210 11123333433333444
Q ss_pred hcCCcEEEEcccccccccC---CCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEe
Q 007255 381 LAAPSIIFFDEADVVGAKR---GGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAA 435 (611)
Q Consensus 381 ~~~p~il~iDeid~l~~~~---~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~ 435 (611)
...+++++||.+..+++.. +..+........+.+.+++..|..+....++.||.+
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5778999999999887521 111111111234556666666655544455555543
No 206
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.96 E-value=0.00011 Score=67.23 Aligned_cols=27 Identities=37% Similarity=0.748 Sum_probs=23.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGAHL 81 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~~~ 81 (611)
.+.|.||+|+||||+++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 578999999999999999999886443
No 207
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.96 E-value=2.8e-06 Score=67.04 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHhccCCccccHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHhccC
Q 007255 197 EERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVG 273 (611)
Q Consensus 197 ~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~v~~ed~~~a~~~i~ 273 (611)
++|.+||+.++++.++..++++..++..|+||+|.||.++|++|...++++.. ..++.+||..+...+.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~--------~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR--------YVILQSDLEEAYATQV 69 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC--------SEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc--------CCcCHHHHHHHHHHHH
Confidence 46889999999988887888999999999999999999999999999988643 3589999999988763
No 208
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.83 E-value=3.2e-05 Score=79.20 Aligned_cols=117 Identities=19% Similarity=0.172 Sum_probs=66.3
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhcccc----------------ccchHHHHHHHHHHHH
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMY----------------VGESEALLRNTFQRAR 380 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~a~ 380 (611)
|+++..-++++||||+|||++|..+|... +.+++.++...-.... ....+..+..+-...+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45666678999999999999999988765 5566666554321110 1112333333333334
Q ss_pred hcCCcEEEEcccccccccCCCCC---CCCcchhHHHHHHHHHHhcCCCCCCCeEEEEec
Q 007255 381 LAAPSIIFFDEADVVGAKRGGSS---STSITVGERLLSTLLTEMDGLEQAKGILVLAAT 436 (611)
Q Consensus 381 ~~~p~il~iDeid~l~~~~~~~~---~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t 436 (611)
...+++|+||.+..+.+.....+ +.......+.+.+++..|..+....++.||++.
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 46788999999999875321111 000011224455666666544444556666553
No 209
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.75 E-value=2e-05 Score=80.31 Aligned_cols=78 Identities=23% Similarity=0.187 Sum_probs=50.0
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccc----ccc------------chHHHHHHHHHHHH
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM----YVG------------ESEALLRNTFQRAR 380 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~----~~g------------~~~~~~~~~~~~a~ 380 (611)
|+++..-++++||||+|||++|..+|... +..+..++...-... ..| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 55666678999999999999999998664 455555554332111 001 12333333333344
Q ss_pred hcCCcEEEEcccccccc
Q 007255 381 LAAPSIIFFDEADVVGA 397 (611)
Q Consensus 381 ~~~p~il~iDeid~l~~ 397 (611)
...|++|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999999874
No 210
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.70 E-value=4.7e-05 Score=72.71 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=47.9
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchh----hccc----------c------------------
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAE----LYSM----------Y------------------ 364 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~----~~~~----------~------------------ 364 (611)
|+++...++|+||+|+|||++++.++... +..++.++... +... +
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 34555668899999999999999999654 34444333211 1000 0
Q ss_pred ----ccchHHHHHHHHHHHHhcCCc--EEEEccccccc
Q 007255 365 ----VGESEALLRNTFQRARLAAPS--IIFFDEADVVG 396 (611)
Q Consensus 365 ----~g~~~~~~~~~~~~a~~~~p~--il~iDeid~l~ 396 (611)
..........+...+....|. +|++||...+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 001233344455555567899 99999998774
No 211
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.68 E-value=4.1e-05 Score=78.12 Aligned_cols=78 Identities=19% Similarity=0.170 Sum_probs=50.4
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccc-----c----------ccchHHHHHHHHH-HHH
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM-----Y----------VGESEALLRNTFQ-RAR 380 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~-----~----------~g~~~~~~~~~~~-~a~ 380 (611)
|+++..-++++||||+|||++|..+|... +.+++.++...-... + .......+..++. .++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46666778999999999999999998765 556666665322110 0 0011122223332 334
Q ss_pred hcCCcEEEEcccccccc
Q 007255 381 LAAPSIIFFDEADVVGA 397 (611)
Q Consensus 381 ~~~p~il~iDeid~l~~ 397 (611)
...+++|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56788999999999874
No 212
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.68 E-value=0.00075 Score=74.16 Aligned_cols=173 Identities=15% Similarity=0.166 Sum_probs=93.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHH-------hCCcEEEEcccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRE-------CGAHLTVISPHS 88 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~-------l~~~~~~v~~~~ 88 (611)
.....++|.+..++.|.+.+... ......++++||+|+|||++++.+++. .....+.++.+.
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCCCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 44567999999999999887431 123467999999999999999998642 212233333221
Q ss_pred cccc---------------------cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHH
Q 007255 89 VHKA---------------------HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLF 147 (611)
Q Consensus 89 ~~~~---------------------~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll 147 (611)
.... ........+...+...... ..++.+|+|||++.. . .
T Consensus 190 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~LLVLDdv~~~------------~---~-- 250 (591)
T 1z6t_A 190 QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR--KHPRSLLILDDVWDS------------W---V-- 250 (591)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH--TCTTCEEEEEEECCH------------H---H--
T ss_pred CchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc--CCCCeEEEEeCCCCH------------H---H--
Confidence 1000 0001111122222211111 125789999999642 1 1
Q ss_pred HHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEE-ccCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhcc
Q 007255 148 TLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVE-VTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCN 226 (611)
Q Consensus 148 ~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~-~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~ 226 (611)
++... ++..||.||...... .... +.. ..+. ..+.+.++-.+++.................++..|.
T Consensus 251 --l~~l~------~~~~ilvTsR~~~~~-~~~~--~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~ 318 (591)
T 1z6t_A 251 --LKAFD------SQCQILLTTRDKSVT-DSVM--GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECK 318 (591)
T ss_dssp --HHTTC------SSCEEEEEESCGGGG-TTCC--SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHT
T ss_pred --HHHhc------CCCeEEEECCCcHHH-HhcC--CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhC
Confidence 11111 134566676653311 1111 111 1222 246899999999988775422222335788888898
Q ss_pred CCcc
Q 007255 227 GYVG 230 (611)
Q Consensus 227 g~~~ 230 (611)
|..-
T Consensus 319 G~PL 322 (591)
T 1z6t_A 319 GSPL 322 (591)
T ss_dssp TCHH
T ss_pred CCcH
Confidence 8743
No 213
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.65 E-value=4.6e-05 Score=81.05 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=35.6
Q ss_pred ccccccccCCCccccccc-chhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh
Q 007255 276 ITRGVTVEIPKVTWEDIG-GLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (611)
Q Consensus 276 ~~~~~~~~~~~~~~~~i~-g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~ 348 (611)
.+..+.....+.+|+++- +|..+...+...+.. ....+++.||||||||+++.+++..+
T Consensus 10 ~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 10 HSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -----------CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCccccCCCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 334455556677888875 556665555555442 12379999999999999999999877
No 214
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.60 E-value=0.0017 Score=71.30 Aligned_cols=177 Identities=16% Similarity=0.056 Sum_probs=95.7
Q ss_pred cccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHH-------hCCcEEeecchhh-
Q 007255 289 WEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHA-------AEASFFSLSGAEL- 360 (611)
Q Consensus 289 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~-------~~~~~~~~~~~~~- 360 (611)
...++|.+...+.|.+.+... ....+-++++||+|+|||++|..+++. ....++.++.+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 456889999999998887631 122346889999999999999998642 1122333332211
Q ss_pred ----cccc----------------ccch-HHHHHHHHHHHHh-cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHH
Q 007255 361 ----YSMY----------------VGES-EALLRNTFQRARL-AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (611)
Q Consensus 361 ----~~~~----------------~g~~-~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll 418 (611)
.... .... +.....+...... ..|.+|++|+++.. ..+
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--------------------~~l 251 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--------------------WVL 251 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--------------------HHH
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--------------------HHH
Confidence 1000 0011 1222222222222 26889999999642 112
Q ss_pred HHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCHH
Q 007255 419 TEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTGA 498 (611)
Q Consensus 419 ~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~~ 498 (611)
..+ ..+..||.||..+..... .. +..-.+...+..+.++-.+++......-..........+++.+.|. +-
T Consensus 252 ~~l-----~~~~~ilvTsR~~~~~~~--~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~-PL 322 (591)
T 1z6t_A 252 KAF-----DSQCQILLTTRDKSVTDS--VM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS-PL 322 (591)
T ss_dssp HTT-----CSSCEEEEEESCGGGGTT--CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC-HH
T ss_pred HHh-----cCCCeEEEECCCcHHHHh--cC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC-cH
Confidence 222 234566667765543211 11 1111111124678888888888766432111234568899999985 55
Q ss_pred HHHHHHH
Q 007255 499 ELEGLCR 505 (611)
Q Consensus 499 ~i~~~~~ 505 (611)
.|+.+..
T Consensus 323 al~~~a~ 329 (591)
T 1z6t_A 323 VVSLIGA 329 (591)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 215
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.59 E-value=0.00011 Score=69.45 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=30.9
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecch
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA 358 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~ 358 (611)
|+++..-++++||||+|||+++..+|...+..++.++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 456666789999999999999999998556666666544
No 216
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.55 E-value=0.00012 Score=72.35 Aligned_cols=114 Identities=14% Similarity=0.171 Sum_probs=61.5
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh-----CCcEEeecchhhccc----------------cccchHHHHHHHHHH
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSM----------------YVGESEALLRNTFQR 378 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~ 378 (611)
|+++. -++++||||+|||+|+..++... +..++.++..+-... .....+...-.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 57899999999999988776554 556667766432211 011122220122222
Q ss_pred ---HHhcCCcEEEEcccccccccCCCCCC---CCc--chhHHHHHHHHHHhcCCCCCCCeEEEE
Q 007255 379 ---ARLAAPSIIFFDEADVVGAKRGGSSS---TSI--TVGERLLSTLLTEMDGLEQAKGILVLA 434 (611)
Q Consensus 379 ---a~~~~p~il~iDeid~l~~~~~~~~~---~~~--~~~~~~~~~ll~~l~~~~~~~~~~vI~ 434 (611)
++...|++|+||-+..+++...-.+. ... ....|..++.|..|-.+....++.+|.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~ 167 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIA 167 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 24567999999999999854211111 000 123455566555544333445555553
No 217
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.52 E-value=0.00011 Score=70.83 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=49.4
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHH--h-------CCcEEeecchhh------cc---c-------------c-cc-
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHA--A-------EASFFSLSGAEL------YS---M-------------Y-VG- 366 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~--~-------~~~~~~~~~~~~------~~---~-------------~-~g- 366 (611)
|+++..-++|+||||+|||+++..+|.. . +...+.++..+. .. . + ..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4556667899999999999999999985 2 345666654431 00 0 0 00
Q ss_pred chHH---HHHHHHHHHHhcCCcEEEEcccccccc
Q 007255 367 ESEA---LLRNTFQRARLAAPSIIFFDEADVVGA 397 (611)
Q Consensus 367 ~~~~---~~~~~~~~a~~~~p~il~iDeid~l~~ 397 (611)
..+. .+..+...+....|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 0111 223344445556789999999998763
No 218
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.49 E-value=0.00048 Score=64.97 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=32.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccc
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS 88 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~ 88 (611)
|+.+..-++|+||||+|||+++..++...+...+.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5667788999999999999999999885566777776543
No 219
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.47 E-value=7.2e-05 Score=75.62 Aligned_cols=116 Identities=14% Similarity=0.168 Sum_probs=65.1
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---------CCcEEeecchhhc---------ccc-------------c--c
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---------EASFFSLSGAELY---------SMY-------------V--G 366 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---------~~~~~~~~~~~~~---------~~~-------------~--g 366 (611)
|+++..-++++||||+|||++|..+|... +...++++...-. ..+ . .
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 55666678999999999999999999875 4556666554320 000 0 0
Q ss_pred chH---HHHHHHHHHHHh-cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEec
Q 007255 367 ESE---ALLRNTFQRARL-AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAAT 436 (611)
Q Consensus 367 ~~~---~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t 436 (611)
..+ ..+..+...++. ..+.+|+||.+..++..... +.+........+.+++..|..+....++.||++.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~-~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYP-GRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSC-TTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhc-CcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 112 123344445555 67889999999988743111 0011111112345555555443333455566543
No 220
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.43 E-value=0.00021 Score=65.13 Aligned_cols=35 Identities=11% Similarity=0.265 Sum_probs=30.2
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEeecchh
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAE 359 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~ 359 (611)
..++|+|+||+|||++++++|..++.+++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 45889999999999999999999998888766543
No 221
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.42 E-value=0.00013 Score=74.39 Aligned_cols=117 Identities=13% Similarity=0.156 Sum_probs=64.0
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---------CCcEEeecchhhcc---------cc---------------cc
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---------EASFFSLSGAELYS---------MY---------------VG 366 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---------~~~~~~~~~~~~~~---------~~---------------~g 366 (611)
|+++..-++++||||+|||++|..+|... +...++++...... .+ ..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 55666678999999999999999999863 44566665543210 00 00
Q ss_pred chH---HHHHHHHHHHHh--cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 007255 367 ESE---ALLRNTFQRARL--AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATN 437 (611)
Q Consensus 367 ~~~---~~~~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn 437 (611)
..+ ..+..+...++. ..+.+|+||.+..++...-. +.+........+..++..|..+....++.||.++.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~-~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS-GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC-GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 011 222333444555 67889999999988743110 00011111123455554444433444556665443
No 222
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.42 E-value=0.00036 Score=66.96 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=31.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH--h-------CCcEEEEcccc
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRE--C-------GAHLTVISPHS 88 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~--l-------~~~~~~v~~~~ 88 (611)
|+.+...++|+||||+|||++++.++.. + +...+.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5667788999999999999999999985 3 34566666543
No 223
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.42 E-value=0.00064 Score=81.47 Aligned_cols=172 Identities=16% Similarity=0.182 Sum_probs=98.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEcccc
Q 007255 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-------GAHLTVISPHS 88 (611)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l-------~~~~~~v~~~~ 88 (611)
.....++|.++.++.|.+.+... -...+-+.|+|+.|+|||+||+.+++.. ...++.++.+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 44567999999999999987431 1234678999999999999999887652 12233343332
Q ss_pred cccc---------------------cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHH
Q 007255 89 VHKA---------------------HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLF 147 (611)
Q Consensus 89 ~~~~---------------------~~~~~~~~l~~~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll 147 (611)
.... ........+...+..... ...++.+|++||++.. ..
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~LlvlDd~~~~---------------~~-- 250 (1249)
T 3sfz_A 190 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLML--RKHPRSLLILDDVWDP---------------WV-- 250 (1249)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS--SSSCSCEEEEESCCCH---------------HH--
T ss_pred cCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHh--ccCCCEEEEEecCCCH---------------HH--
Confidence 1000 000111122222221110 0134789999999742 11
Q ss_pred HHHhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccC-CCHHHHHHHHHHhhcCCCCCCcccHHHHHHhcc
Q 007255 148 TLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTV-PTAEERFEILKLYTKKVPLDANVDLEAIATSCN 226 (611)
Q Consensus 148 ~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~-p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~ 226 (611)
++... +...||.||....-.. ... .....+.+++ ++.++-.++|..+..............+++.|.
T Consensus 251 --~~~~~------~~~~ilvTtR~~~~~~-~~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~ 318 (1249)
T 3sfz_A 251 --LKAFD------NQCQILLTTRDKSVTD-SVM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECK 318 (1249)
T ss_dssp --HTTTC------SSCEEEEEESSTTTTT-TCC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTT
T ss_pred --HHhhc------CCCEEEEEcCCHHHHH-hhc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhC
Confidence 12111 1235666776543221 111 1224567775 899999999988775443333344788889998
Q ss_pred CCc
Q 007255 227 GYV 229 (611)
Q Consensus 227 g~~ 229 (611)
|..
T Consensus 319 glP 321 (1249)
T 3sfz_A 319 GSP 321 (1249)
T ss_dssp TCH
T ss_pred CCH
Confidence 864
No 224
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.39 E-value=9.1e-05 Score=67.58 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=30.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH 87 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~ 87 (611)
+..|+|+|+||+||||+++.+++.++..++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 35799999999999999999999999888776644
No 225
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.36 E-value=0.0024 Score=68.41 Aligned_cols=74 Identities=14% Similarity=0.245 Sum_probs=51.6
Q ss_pred eEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcc--cccHHhhccCCcceEEEccCCC
Q 007255 118 SVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD--AIDPALRRSGRFDAEVEVTVPT 195 (611)
Q Consensus 118 ~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~--~l~~~l~~~~Rf~~~i~~~~p~ 195 (611)
.+|+|||++.++... ...+...+..+....... .+.+|.+|.++. .++..++. .|...|.+...+
T Consensus 345 ivvVIDE~~~L~~~~------~~~~~~~L~~Iar~GRa~-----GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV------GKKVEELIARIAQKARAA-----GIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT------CHHHHHHHHHHHHHCTTT-----TEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh------hHHHHHHHHHHHHHHhhC-----CeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 689999998776421 123344444555444322 366777777766 78899988 788889999999
Q ss_pred HHHHHHHHH
Q 007255 196 AEERFEILK 204 (611)
Q Consensus 196 ~~~r~~Il~ 204 (611)
..+...|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 988888774
No 226
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.35 E-value=0.00021 Score=65.78 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEE
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVREC---GAHLTVI 84 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v 84 (611)
.-++++||+|+||||++..++..+ +...+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467899999999999986666543 4444443
No 227
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.35 E-value=0.0038 Score=67.85 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=90.3
Q ss_pred CCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHH----HhCCc---EEEEccccccc---
Q 007255 22 GGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVR----ECGAH---LTVISPHSVHK--- 91 (611)
Q Consensus 22 ~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~----~l~~~---~~~v~~~~~~~--- 91 (611)
+|.+..++.|.+.+... +......+.++|+.|+|||++|+.+++ ..... .+.++.+....
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 59999999999988431 112346889999999999999999997 33221 12223222100
Q ss_pred -------------c----ccc----chHHHHHHHHHHHHhhhhcCC-CeEEEEccccccCCCCCCCchhhHHHHHHHHHH
Q 007255 92 -------------A----HVG----ESEKALREAFSQASSHALSGK-PSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (611)
Q Consensus 92 -------------~----~~~----~~~~~l~~~f~~~~~~~~~~~-~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~ 149 (611)
. ... .....+...+... ..++ +.+|++||++... .+ .|...
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~~kr~LlVLDdv~~~~-----------~~--~~~~~ 263 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNA----LIDRPNTLFVFDDVVQEE-----------TI--RWAQE 263 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHH----HTTSTTEEEEEEEECCHH-----------HH--HHHHH
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHH----HcCCCcEEEEEECCCCch-----------hh--ccccc
Confidence 0 000 0001111111111 1333 7899999997531 11 12111
Q ss_pred HhcCCCCCCCCCcEEEEEeecCcccccHHhhccCCcceEEEccCCCHHHHHHHHHHhhcCCCCCCc--ccHHHHHHhccC
Q 007255 150 MDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN--VDLEAIATSCNG 227 (611)
Q Consensus 150 l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~--~~~~~la~~~~g 227 (611)
....||.||.... +..... .....+.+++.+.++-.++|............ .....+++.|.|
T Consensus 264 -----------~gs~ilvTTR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~G 328 (549)
T 2a5y_B 264 -----------LRLRCLVTTRDVE-ISNAAS---QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSG 328 (549)
T ss_dssp -----------TTCEEEEEESBGG-GGGGCC---SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTT
T ss_pred -----------CCCEEEEEcCCHH-HHHHcC---CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCC
Confidence 1235666666432 211111 12346899999999999999987533221111 125667777777
Q ss_pred Cc
Q 007255 228 YV 229 (611)
Q Consensus 228 ~~ 229 (611)
..
T Consensus 329 lP 330 (549)
T 2a5y_B 329 NP 330 (549)
T ss_dssp CH
T ss_pred Ch
Confidence 63
No 228
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.33 E-value=5e-05 Score=70.00 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=22.0
Q ss_pred CcceeCCCCCChHHHHHHHHHHh---CCcEEee
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAA---EASFFSL 355 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~ 355 (611)
-.+++||+|+|||+++..++..+ +..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 46899999999999997666543 5554443
No 229
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.32 E-value=0.00097 Score=63.37 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=28.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEc
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVIS 85 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~ 85 (611)
|+.+...++|+||+|+|||++++.++..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45566789999999999999999998654 44555554
No 230
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.31 E-value=0.00048 Score=66.45 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=22.5
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHH
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAA 345 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala 345 (611)
|+++..-+.|.||+|+|||++++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45566678999999999999999998
No 231
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.30 E-value=0.001 Score=62.87 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=44.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccc-------cccccccch-----HHHHHHHHHHHHhhhhcCCC
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHS-------VHKAHVGES-----EKALREAFSQASSHALSGKP 117 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~-------~~~~~~~~~-----~~~l~~~f~~~~~~~~~~~~ 117 (611)
..-++++||+|+||||++..++..+ +...+.++... +.+. .|.. .....++++.+.......++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3567889999999999998887766 45555553221 1111 1110 01123445444433333457
Q ss_pred eEEEEccccccC
Q 007255 118 SVVFIDEIDALC 129 (611)
Q Consensus 118 ~il~IDeid~l~ 129 (611)
.+|+|||+..+.
T Consensus 91 dvViIDEaQ~l~ 102 (223)
T 2b8t_A 91 KVIGIDEVQFFD 102 (223)
T ss_dssp CEEEECSGGGSC
T ss_pred CEEEEecCccCc
Confidence 899999998653
No 232
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.29 E-value=0.00015 Score=67.55 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
.+...|+|+||||+||||+++.+++.++..++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4557899999999999999999999999887643
No 233
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.29 E-value=0.00059 Score=69.33 Aligned_cols=82 Identities=22% Similarity=0.354 Sum_probs=49.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccccccccc----cc--------chHHHHHHHHHHHHhhhh
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAH----VG--------ESEKALREAFSQASSHAL 113 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~----~~--------~~~~~l~~~f~~~~~~~~ 113 (611)
|+.+..-++|+||||+|||+++..++..+ +..+++++........ .+ ........++..+.....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 46667789999999999999999998764 5566677655322100 00 000011222222222222
Q ss_pred cCCCeEEEEccccccCC
Q 007255 114 SGKPSVVFIDEIDALCP 130 (611)
Q Consensus 114 ~~~~~il~IDeid~l~~ 130 (611)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 34578999999988876
No 234
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.29 E-value=0.00021 Score=66.00 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=29.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 50 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 50 ~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
...+..|+|.|+||+||||+++.+++.++..++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4456789999999999999999999999877554
No 235
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.27 E-value=0.0029 Score=75.80 Aligned_cols=175 Identities=16% Similarity=0.058 Sum_probs=98.2
Q ss_pred cccccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-------CCcEEeecchhh-
Q 007255 289 WEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-------EASFFSLSGAEL- 360 (611)
Q Consensus 289 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-------~~~~~~~~~~~~- 360 (611)
...++|.+...+.|.+.+... -...+-+.++|++|+|||+||+.+++.. ...++.++.+..
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 456889999999998887531 1223457899999999999999988652 122223332210
Q ss_pred ----c-------cc---------cccchHHHHHHHHHHHHh--cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHH
Q 007255 361 ----Y-------SM---------YVGESEALLRNTFQRARL--AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (611)
Q Consensus 361 ----~-------~~---------~~g~~~~~~~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll 418 (611)
. .. ........+...+...-. ..+.+|++|+++.. .
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-------------------~--- 249 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-------------------W--- 249 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-------------------H---
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-------------------H---
Confidence 0 00 001111222222222222 23779999999743 0
Q ss_pred HHhcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCC-CCHHHHHHHHHHHhcCCCCCCcccHHHHHHhCCCCCH
Q 007255 419 TEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPP-PDLEARHEILRVHTRNMKVGDDVDLRSIAEETELFTG 497 (611)
Q Consensus 419 ~~l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~s~ 497 (611)
.++.+ ..+..||.||..+...... . .....+.++. .+.++-.++|................++++.+.|. +
T Consensus 250 -~~~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl-P 321 (1249)
T 3sfz_A 250 -VLKAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS-P 321 (1249)
T ss_dssp -HHTTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC-H
T ss_pred -HHHhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC-H
Confidence 12222 2234566677765433111 1 2234677775 88888888988666433322334467899999985 4
Q ss_pred HHHHHHH
Q 007255 498 AELEGLC 504 (611)
Q Consensus 498 ~~i~~~~ 504 (611)
=.|+.+.
T Consensus 322 Lal~~~~ 328 (1249)
T 3sfz_A 322 LVVSLIG 328 (1249)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 236
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.27 E-value=0.00013 Score=68.08 Aligned_cols=35 Identities=34% Similarity=0.431 Sum_probs=29.8
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeec
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~ 356 (611)
.+...++|.||||||||++++++|..++.+++..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 44567899999999999999999999999886543
No 237
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.26 E-value=0.00023 Score=65.41 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
+..|+|+|||||||||+++.+|+.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 46899999999999999999999999887643
No 238
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.25 E-value=0.00035 Score=69.16 Aligned_cols=61 Identities=28% Similarity=0.386 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccc
Q 007255 25 RAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH 90 (611)
Q Consensus 25 ~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~ 90 (611)
++..+.+.+.+...+.. ......+..++|+||||+||||+++.+++.++..++.+++..+.
T Consensus 10 ~~~~~~~~~~~~~~l~~-----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG-----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp HHHHHHHHHHHHHHHTT-----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred HHHHHHHHHHHHHHhcc-----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 45555555555433221 12234567899999999999999999999986566777765544
No 239
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.25 E-value=0.00013 Score=66.94 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=29.1
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCcEEeec
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~ 356 (611)
+..++|+||||||||++++.+|..++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 356899999999999999999999999987653
No 240
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.24 E-value=0.00074 Score=69.04 Aligned_cols=82 Identities=28% Similarity=0.399 Sum_probs=50.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccccccccc----ccch--------HHHHHHHHHHHHhhhh
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAH----VGES--------EKALREAFSQASSHAL 113 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~----~~~~--------~~~l~~~f~~~~~~~~ 113 (611)
|+.+...++|+||||+|||+++..++..+ +..++.++........ .+.. ......++..+.....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 46667789999999999999999887764 5667777655322110 0000 0011222222222222
Q ss_pred cCCCeEEEEccccccCC
Q 007255 114 SGKPSVVFIDEIDALCP 130 (611)
Q Consensus 114 ~~~~~il~IDeid~l~~ 130 (611)
...+.+|+||.+..+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 34578999999998875
No 241
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.22 E-value=0.00044 Score=73.46 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVREC 77 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l 77 (611)
.+++|.|+||||||+++.+++..+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 499999999999999999998876
No 242
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.20 E-value=0.0002 Score=68.15 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=24.4
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~ 348 (611)
|+++..-+.|.||+|+|||++++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566668999999999999999999854
No 243
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.19 E-value=0.00037 Score=65.98 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=42.4
Q ss_pred CcceeCCCCCChHHHHHHHHHHh---CCcEEeecchh-------hccccccch-----HHHHHHHHHHHHh----cCCcE
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAE-------LYSMYVGES-----EALLRNTFQRARL----AAPSI 386 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~-------~~~~~~g~~-----~~~~~~~~~~a~~----~~p~i 386 (611)
-++++||+|+|||+++..++..+ +..++.+++.. +.++ .|.. ......++..+.. ..+++
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 46788999999999999888766 55555553221 1111 1110 0112345555554 34789
Q ss_pred EEEcccccc
Q 007255 387 IFFDEADVV 395 (611)
Q Consensus 387 l~iDeid~l 395 (611)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999876
No 244
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.18 E-value=0.0011 Score=63.65 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=26.7
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEee
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSL 355 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~ 355 (611)
|+++..-++++||||+|||+++..+|... +..++.+
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~ 57 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV 57 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 55666678999999999999998887543 4444443
No 245
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.17 E-value=0.00032 Score=71.48 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=25.6
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~ 348 (611)
|+++..-+.|+||||+|||++++.++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56666778999999999999999999876
No 246
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.17 E-value=0.00038 Score=72.10 Aligned_cols=118 Identities=15% Similarity=0.162 Sum_probs=61.7
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---------CCcEEeecchhhccc--------ccc----------------
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---------EASFFSLSGAELYSM--------YVG---------------- 366 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---------~~~~~~~~~~~~~~~--------~~g---------------- 366 (611)
|+.+..-++|+||||+|||+|+..+|-.. +...++++..+.... ..|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56666778999999999999999776433 233555554431110 000
Q ss_pred ch---HHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 007255 367 ES---EALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNR 438 (611)
Q Consensus 367 ~~---~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 438 (611)
.. ...+..+...+....|.+|+||++-.++...-. +........+.+..++..|..+....++.||+++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s-g~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS-GRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhc-CccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 01 112333344445567899999999887643211 001111112333445444443333334555555543
No 247
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.15 E-value=0.0031 Score=59.25 Aligned_cols=29 Identities=31% Similarity=0.349 Sum_probs=23.9
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh---CCcEE
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFF 353 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~ 353 (611)
..+++.|+||||||+++-.+|..+ |..+.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 458999999999999999998776 55544
No 248
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.14 E-value=0.0011 Score=64.69 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=30.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEccccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRE---CGAHLTVISPHSV 89 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~---l~~~~~~v~~~~~ 89 (611)
+..|+|+|+||+||||+++.+++. .|..++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 467999999999999999999998 6777776665544
No 249
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.10 E-value=0.00034 Score=63.90 Aligned_cols=32 Identities=31% Similarity=0.519 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
.+..|+|+|+||+||||+++.+++.++..++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 45689999999999999999999999877654
No 250
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.09 E-value=0.00023 Score=65.72 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=28.9
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
..+.-++|.|+||+|||++++.++..++.+++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 3445689999999999999999999999887653
No 251
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.09 E-value=0.00059 Score=69.42 Aligned_cols=82 Identities=27% Similarity=0.425 Sum_probs=49.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccccccccc----ccch--------HHHHHHHHHHHHhhhh
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAH----VGES--------EKALREAFSQASSHAL 113 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~----~~~~--------~~~l~~~f~~~~~~~~ 113 (611)
|+.+..-++++||||+|||+++..++..+ +...+.++........ .|.. .....+.+..+.....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45667789999999999999999987654 5566666654321110 0100 0011222222222222
Q ss_pred cCCCeEEEEccccccCC
Q 007255 114 SGKPSVVFIDEIDALCP 130 (611)
Q Consensus 114 ~~~~~il~IDeid~l~~ 130 (611)
...+.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 34588999999998874
No 252
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.07 E-value=0.0024 Score=61.36 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=23.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHH
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVV 74 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la 74 (611)
|+.+...+.|.||+|+||||+++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56677889999999999999999988
No 253
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.06 E-value=0.00044 Score=62.42 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEc
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVIS 85 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 85 (611)
.|+|.||||+||||+++.+++.++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 6899999999999999999999998765443
No 254
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.04 E-value=0.00039 Score=63.54 Aligned_cols=33 Identities=33% Similarity=0.523 Sum_probs=28.7
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
.+..++|+|+||+|||++++.+|..++..++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 345699999999999999999999999887654
No 255
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.03 E-value=0.0004 Score=63.81 Aligned_cols=32 Identities=34% Similarity=0.465 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH-hCCcEEE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRE-CGAHLTV 83 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~-l~~~~~~ 83 (611)
.+..|+|+|+|||||||+++.+++. +|.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 3568999999999999999999999 6766543
No 256
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.03 E-value=0.0021 Score=66.95 Aligned_cols=72 Identities=17% Similarity=0.087 Sum_probs=48.2
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhh-------------------ccc-cccchHHHHHHHHHHH
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAEL-------------------YSM-YVGESEALLRNTFQRA 379 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~-------------------~~~-~~g~~~~~~~~~~~~a 379 (611)
++.-+++.|++|+||||++..+|..+ |..+..+.+..+ ... ...+....++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999776 455544443211 000 1123344556677777
Q ss_pred HhcCCcEEEEccccc
Q 007255 380 RLAAPSIIFFDEADV 394 (611)
Q Consensus 380 ~~~~p~il~iDeid~ 394 (611)
+....++++||....
T Consensus 179 ~~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGR 193 (443)
T ss_dssp HHTTCSEEEEECCCC
T ss_pred HhCCCCEEEEECCCc
Confidence 777788999998743
No 257
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.03 E-value=0.0059 Score=56.03 Aligned_cols=113 Identities=12% Similarity=0.162 Sum_probs=67.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccc---------cccccc-------------c----chHHHHHH
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHS---------VHKAHV-------------G----ESEKALRE 103 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~---------~~~~~~-------------~----~~~~~l~~ 103 (611)
...|++++++|.||||+|-.+|-.. |..+..+..-. +..... . ........
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3689999999999999999887654 66655552211 111110 0 01234456
Q ss_pred HHHHHHhhhhcCCCeEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcccccHHhhc
Q 007255 104 AFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRR 181 (611)
Q Consensus 104 ~f~~~~~~~~~~~~~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~~l~~~l~~ 181 (611)
.+..+......++..+|++||+.....-+-- -...++.++... +.+.-+|.|.|.+ ++++..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l-------~~~ev~~~l~~R------p~~~~vIlTGr~a---p~~l~e 169 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYL-------PLEEVISALNAR------PGHQTVIITGRGC---HRDILD 169 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSS-------CHHHHHHHHHTS------CTTCEEEEECSSC---CHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCC-------CHHHHHHHHHhC------cCCCEEEEECCCC---cHHHHH
Confidence 6666766665677889999999654221100 024566777642 2245677777763 555544
No 258
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.02 E-value=0.00024 Score=77.37 Aligned_cols=97 Identities=22% Similarity=0.318 Sum_probs=54.1
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhccccc----cchHHHHHHHHHHH---------HhcCCcEEE
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYV----GESEALLRNTFQRA---------RLAAPSIIF 388 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~a---------~~~~p~il~ 388 (611)
..+++.||||||||+++.+++..+ +..+....++.-..+.. +.....++.++... .....++|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 468899999999999999998765 55555443322111100 00001122222100 011347999
Q ss_pred EcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 007255 389 FDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNR 438 (611)
Q Consensus 389 iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 438 (611)
|||+..+ ....+..|+..+ ....+++++|=.++
T Consensus 285 IDEasml--------------~~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMM--------------GDALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGC--------------CHHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred EcCccCC--------------CHHHHHHHHHhC---cCCCEEEEEecccc
Confidence 9999766 133455555444 35566777776554
No 259
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.02 E-value=0.00047 Score=62.65 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
.++|.||||+||||+++.+|+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 69999999999999999999999987653
No 260
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.01 E-value=0.0004 Score=64.01 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=32.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccc
Q 007255 50 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS 88 (611)
Q Consensus 50 ~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~ 88 (611)
+.++..++|+||+|+||||+++.++...+...+.++..+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 455678999999999999999999998776667776544
No 261
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.99 E-value=0.0021 Score=61.60 Aligned_cols=38 Identities=29% Similarity=0.383 Sum_probs=28.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISP 86 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 86 (611)
|+.+...++++||||+|||+++..++... +...+.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 56677889999999999999988776543 455555543
No 262
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.98 E-value=0.00036 Score=64.14 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=27.4
Q ss_pred CCCcceeCCCCCChHHHHHHHHHH-hCCcEEee
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHA-AEASFFSL 355 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~-~~~~~~~~ 355 (611)
+..++|+|+||||||++++.+|.. +|.+++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 446899999999999999999999 68777654
No 263
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.98 E-value=0.00054 Score=61.79 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
.+|+|.|+|||||||+++.+++.++.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 589999999999999999999999988764
No 264
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.98 E-value=0.00061 Score=64.20 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=31.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccc
Q 007255 50 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH 90 (611)
Q Consensus 50 ~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~ 90 (611)
.+.++-|+|.||||+||+|.++.+++.++.. +++..++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHH
Confidence 4566789999999999999999999999865 55655544
No 265
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.98 E-value=0.00034 Score=70.59 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.1
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHH
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHA 347 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~ 347 (611)
|+++..-++++||||+|||++|..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5566667899999999999999999875
No 266
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.97 E-value=0.00038 Score=63.29 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=27.0
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
.++|.||||+|||++++++|..++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 588999999999999999999999887653
No 267
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.97 E-value=0.00053 Score=62.04 Aligned_cols=30 Identities=27% Similarity=0.576 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~ 82 (611)
+..+.|.||+|+||||+++.++..++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 357999999999999999999999987544
No 268
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.97 E-value=0.001 Score=66.37 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=31.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS 88 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~ 88 (611)
+..++|+||+|+|||++++.+|+.++..++..+.-.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 357999999999999999999999998877776543
No 269
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.96 E-value=0.00044 Score=63.39 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
..|+|+|+||+||||+++.+++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 358999999999999999999999988654
No 270
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.96 E-value=0.0037 Score=66.95 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=50.8
Q ss_pred cEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCc--ccchhccCCCCccceeecCCCC
Q 007255 385 SIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPH--AIDAALMRPGRFDLVLYVPPPD 462 (611)
Q Consensus 385 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~--~ld~al~r~gRf~~~i~~~~p~ 462 (611)
-+|+|||++.++...+ ......+..+... ...-++.+|++|.+|. .++..++. -|...|.+...+
T Consensus 345 ivvVIDE~~~L~~~~~-------~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-------KKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHTC-------HHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhhh-------HHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 4899999998864310 1112222333222 3456789999999998 78877776 677888898899
Q ss_pred HHHHHHHHH
Q 007255 463 LEARHEILR 471 (611)
Q Consensus 463 ~~~r~~il~ 471 (611)
..+...|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888877875
No 271
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.95 E-value=0.00045 Score=62.39 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=27.5
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEeec
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~ 356 (611)
-++|.||||+|||++++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 3789999999999999999999998886654
No 272
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.94 E-value=0.00083 Score=62.55 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
.+..|+|+|+||+||||+++.+++.++.+++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 456799999999999999999999999876543
No 273
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.93 E-value=0.00072 Score=63.99 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
.+..|+|.|+||+||||+++.+++.++..++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 35689999999999999999999999976544
No 274
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.93 E-value=0.00036 Score=70.31 Aligned_cols=53 Identities=13% Similarity=0.295 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 22 GGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 22 ~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
++++..++.+...+...+.. ....+++|+||+|+||||+++.+|+.++.+++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~---------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED---------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT---------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc---------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 45667777776666442221 122579999999999999999999999877644
No 275
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.92 E-value=0.0017 Score=64.16 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=48.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEcccccccc----cccc--------hHHHHHHH-HHHHHh
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKA----HVGE--------SEKALREA-FSQASS 110 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~~~~~----~~~~--------~~~~l~~~-f~~~~~ 110 (611)
|+.+. -++++||||+|||+++-.++... +..+++++...-... ..|. .......+ +..+..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 68999999999999988775543 566777776532210 0000 00011222 222111
Q ss_pred h--hhcCCCeEEEEccccccCCC
Q 007255 111 H--ALSGKPSVVFIDEIDALCPR 131 (611)
Q Consensus 111 ~--~~~~~~~il~IDeid~l~~~ 131 (611)
. .....|.+++||-+..+.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 1 23457999999999999863
No 276
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.92 E-value=0.00055 Score=63.29 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
.+..|+|.|+||+||||+++.+++.++..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 456899999999999999999999999775543
No 277
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.92 E-value=0.00073 Score=66.84 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=30.9
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhc
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~ 361 (611)
.+..++|.||||+|||++|+.++..++..++.+++..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 345688999999999999999999985556667665443
No 278
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.91 E-value=0.00048 Score=65.58 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=27.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
..+..|+|.|+||+||||+++.+++.++..++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 345789999999999999999999999876554
No 279
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.91 E-value=0.0013 Score=63.87 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=32.2
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhh
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~ 360 (611)
..+..++|.||||+|||++|+.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345568999999999999999999999866666776665
No 280
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.91 E-value=0.00049 Score=63.04 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=27.6
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEeec
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~ 356 (611)
.++|.|+||+|||++|+.+|..+|.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4889999999999999999999999886543
No 281
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.91 E-value=0.00045 Score=62.31 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=28.2
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
..++|.|+||||||++++.+|..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4689999999999999999999999998764
No 282
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.00076 Score=62.18 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=26.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~ 82 (611)
|..|+|.|+||+||||+++.+++.++.+++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 467999999999999999999999987654
No 283
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.88 E-value=0.0081 Score=63.85 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=47.9
Q ss_pred CC-eEEEEccccccCCCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCcc--cccHHhhccCCcceEEEcc
Q 007255 116 KP-SVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD--AIDPALRRSGRFDAEVEVT 192 (611)
Q Consensus 116 ~~-~il~IDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~v~ii~ttn~~~--~l~~~l~~~~Rf~~~i~~~ 192 (611)
.| .+++|||+..+... ....+...+..+....... .+.+|.+|.++. .++..++. .|...|.|.
T Consensus 296 lP~ivlvIDE~~~ll~~------~~~~~~~~l~~Lar~gRa~-----GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lr 362 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMT------VGKKVEELIARLAQKARAA-----GIHLVLATQRPSVDVITGLIKA--NIPTRIAFT 362 (512)
T ss_dssp CCEEEEEEETHHHHHHH------HHHHHHHHHHHHHHHCGGG-----TEEEEEEESCCCTTTSCHHHHH--HCCEEEEEC
T ss_pred CCcEEEEEeCHHHHHhh------hhHHHHHHHHHHHHHhhhC-----CcEEEEEecCCccccccHHHHh--hcCCeEEEE
Confidence 35 48999999776541 1112233333333332211 255666666655 68888887 788889999
Q ss_pred CCCHHHHHHHHH
Q 007255 193 VPTAEERFEILK 204 (611)
Q Consensus 193 ~p~~~~r~~Il~ 204 (611)
..+..+...|+.
T Consensus 363 v~s~~dsr~ilg 374 (512)
T 2ius_A 363 VSSKIDSRTILD 374 (512)
T ss_dssp CSSHHHHHHHHS
T ss_pred cCCHHHHHHhcC
Confidence 999999888875
No 284
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.88 E-value=0.00065 Score=62.27 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=26.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~ 82 (611)
+..|+|.|+||+||||+++.+++.++..++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 357999999999999999999999986543
No 285
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.86 E-value=0.0012 Score=64.03 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=33.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccc
Q 007255 50 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV 89 (611)
Q Consensus 50 ~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~ 89 (611)
...|..++|.|+||+||||+++.+++.++...+.++...+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3456789999999999999999999999866666776554
No 286
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.86 E-value=0.00061 Score=61.57 Aligned_cols=30 Identities=33% Similarity=0.719 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
..|+|+||||+||||+++.+ +.+|.+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 46899999999999999999 8888886653
No 287
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.86 E-value=0.0007 Score=65.67 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVISP 86 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~ 86 (611)
.++|+|||||||||+++.+|+.++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 57899999999999999999999988776553
No 288
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.86 E-value=0.00069 Score=61.30 Aligned_cols=30 Identities=30% Similarity=0.607 Sum_probs=26.5
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEe
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~ 354 (611)
..+.|.||+|+|||++++.+|..++..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 458899999999999999999999976654
No 289
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.85 E-value=0.00069 Score=65.28 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
..|..|+|.||||+||||+++.+++.++...+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3567899999999999999999999998765543
No 290
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.85 E-value=0.00072 Score=63.89 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
...|+|.|+||+||||+++.+++.++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 46799999999999999999999999776543
No 291
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.84 E-value=0.0006 Score=62.07 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH-HhCCcEEEEcc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVR-ECGAHLTVISP 86 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~-~l~~~~~~v~~ 86 (611)
|..|+|.|+||+||||+++.+++ .++ +..++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~ 34 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINR 34 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecH
Confidence 35789999999999999999998 454 444443
No 292
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.84 E-value=0.0036 Score=63.67 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC 77 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l 77 (611)
+...+++.||+|+||||++++++..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44579999999999999999998876
No 293
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.84 E-value=0.0013 Score=63.20 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=48.8
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh----CCcEEeecch----hhccc----------------------------
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA----EASFFSLSGA----ELYSM---------------------------- 363 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----~~~~~~~~~~----~~~~~---------------------------- 363 (611)
|+++..-++++|+||+|||++|..+|... +.+++.++.. .+...
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 105 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhh
Confidence 56666678999999999999998776432 4555444321 11000
Q ss_pred ------c----ccchHHHHHHHHHHHHhcCCcEEEEcccccccc
Q 007255 364 ------Y----VGESEALLRNTFQRARLAAPSIIFFDEADVVGA 397 (611)
Q Consensus 364 ------~----~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~ 397 (611)
+ .......+..+...++...+..++||.+..+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~ 149 (251)
T 2zts_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIAL 149 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHH
T ss_pred cccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhh
Confidence 0 001123344555566777888999999987753
No 294
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.83 E-value=0.0047 Score=67.11 Aligned_cols=165 Identities=16% Similarity=0.136 Sum_probs=89.1
Q ss_pred cchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHH----HhCCc-----EEeecch-----
Q 007255 293 GGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAH----AAEAS-----FFSLSGA----- 358 (611)
Q Consensus 293 ~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~----~~~~~-----~~~~~~~----- 358 (611)
+|.+..++.|.+.+... +....+.+.++|++|+|||+||+.+++ ..... ++.++..
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49988888888877531 112345688999999999999999997 23221 2233221
Q ss_pred -hhcc----ccc------------cchHHHHHHHHHHHHhc-CCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHH
Q 007255 359 -ELYS----MYV------------GESEALLRNTFQRARLA-APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTE 420 (611)
Q Consensus 359 -~~~~----~~~------------g~~~~~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ 420 (611)
.+.. ... ......+...+...-.. .+.+|++|+++.. ..+ .+. .
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~---------------~~~--~~~-~ 262 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE---------------ETI--RWA-Q 262 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH---------------HHH--HHH-H
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc---------------hhh--ccc-c
Confidence 0000 000 00111122223322234 3789999999743 111 111 1
Q ss_pred hcCCCCCCCeEEEEecCCCcccchhccCCCCccceeecCCCCHHHHHHHHHHHhcCCCCCCc--ccHHHHHHhCCCC
Q 007255 421 MDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARHEILRVHTRNMKVGDD--VDLRSIAEETELF 495 (611)
Q Consensus 421 l~~~~~~~~~~vI~~tn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~g~ 495 (611)
. .+..||.||........ .. .....+.++..+.++-.++|.......+...+ .....+++.+.|.
T Consensus 263 ~------~gs~ilvTTR~~~v~~~--~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVEISNA--AS--QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp H------TTCEEEEEESBGGGGGG--CC--SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred c------CCCEEEEEcCCHHHHHH--cC--CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence 1 34456667765443211 11 12346888899999999999866432221111 1245677777774
No 295
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.82 E-value=0.0071 Score=57.84 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccc
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH 87 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~ 87 (611)
..++++||+|+|||.++..++..++...+.+.+.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4699999999999999999998887766665543
No 296
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.82 E-value=0.00096 Score=62.15 Aligned_cols=31 Identities=29% Similarity=0.637 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
+..|+|+|++|+||||+++.+++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4679999999999999999999999876554
No 297
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.82 E-value=0.0018 Score=67.38 Aligned_cols=72 Identities=18% Similarity=0.042 Sum_probs=44.0
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhc--------------c--cc---c-cchHHHHHHHHHHH
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELY--------------S--MY---V-GESEALLRNTFQRA 379 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~--------------~--~~---~-g~~~~~~~~~~~~a 379 (611)
++.-+++.||+|+||||++..+|..+ +..+..+.+.... + -+ . .+........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35668899999999999999999776 5555444322110 0 00 0 11222333444455
Q ss_pred HhcCCcEEEEccccc
Q 007255 380 RLAAPSIIFFDEADV 394 (611)
Q Consensus 380 ~~~~p~il~iDeid~ 394 (611)
....+++++||....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 545788999998754
No 298
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.82 E-value=0.00078 Score=61.95 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECG 78 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~ 78 (611)
+..|+|.|+||+||||+++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999887
No 299
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.81 E-value=0.00065 Score=65.91 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=28.2
Q ss_pred cceeCCCCCChHHHHHHHHHHhCCcEEeecc
Q 007255 327 ALLHGPPGCSKTTLAKAAAHAAEASFFSLSG 357 (611)
Q Consensus 327 ~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~ 357 (611)
+++.||||+|||++|+.+|..++..++..+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 6899999999999999999999998877664
No 300
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.81 E-value=0.0021 Score=64.71 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=32.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEcccc
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---------GAHLTVISPHS 88 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l---------~~~~~~v~~~~ 88 (611)
|+++..-++++||||+|||+++..++... +...++++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56677889999999999999999998865 45677776654
No 301
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.80 E-value=0.00049 Score=63.41 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=31.9
Q ss_pred CCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhh
Q 007255 321 ISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (611)
Q Consensus 321 ~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~ 360 (611)
+.++..+.|.||||+||||+++.++...+...+.++..++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3445568899999999999999999887777677766544
No 302
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.80 E-value=0.00074 Score=68.79 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=56.8
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh----CCcEEeec-chhhcc---------ccccchHHHHHHHHHHHHhcCCcEEEE
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA----EASFFSLS-GAELYS---------MYVGESEALLRNTFQRARLAAPSIIFF 389 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~----~~~~~~~~-~~~~~~---------~~~g~~~~~~~~~~~~a~~~~p~il~i 389 (611)
...+++.||+|+||||+.++++..+ +..++.+. +.++.. ...+.....+...+..+-...|++|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 3458899999999999999998876 23333322 111110 111111122344566666688999999
Q ss_pred cccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCccc
Q 007255 390 DEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 390 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
||+-. ......++.... . +..+|.++...+..
T Consensus 203 DEp~d----------------~e~~~~~~~~~~----~-G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 203 GEMRD----------------LETIRLALTAAE----T-GHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCCS----------------HHHHHHHHHHHH----T-TCEEEEEESCSSHH
T ss_pred CCCCC----------------HHHHHHHHHHHh----c-CCEEEEEEccChHH
Confidence 99831 223344444432 2 33577777776654
No 303
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.80 E-value=0.00094 Score=60.35 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
..|+|.|+||+||||+++.+++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 468999999999999999999999987554
No 304
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.79 E-value=0.0011 Score=63.32 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
.+..|+|.|+||+||||+++.+++.++..++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34689999999999999999999999976554
No 305
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.79 E-value=0.00074 Score=62.59 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
+..|+|.|+||+||||+++.+++.++..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4689999999999999999999999966543
No 306
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.79 E-value=0.00081 Score=66.27 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=23.9
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~ 348 (611)
|+++..-++|+||+|+|||+++..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44555678999999999999999998654
No 307
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.79 E-value=0.00064 Score=62.11 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~ 82 (611)
+..|+|.|+||+||||+++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 467999999999999999999999998765
No 308
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.78 E-value=0.00076 Score=63.95 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~ 82 (611)
.+..|+|.||||+||||+++.+++.++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4568999999999999999999999996543
No 309
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.76 E-value=0.00076 Score=62.82 Aligned_cols=31 Identities=35% Similarity=0.369 Sum_probs=27.4
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
..++|.|+||+|||++|+.++..++.+++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3588999999999999999999999887654
No 310
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.76 E-value=0.0032 Score=57.81 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=59.6
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh---CCcEEee---cc------hhhccccc-------------cc----hHHHHHHH
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSL---SG------AELYSMYV-------------GE----SEALLRNT 375 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~---~~------~~~~~~~~-------------g~----~~~~~~~~ 375 (611)
..+++|+++|.|||++|-++|-.+ |..+..+ .. .++..... .+ ........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 358899999999999999999776 5555544 22 12232220 00 12344555
Q ss_pred HHHHHh----cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 007255 376 FQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRP 439 (611)
Q Consensus 376 ~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 439 (611)
+..++. ...++|++||+-....-+ -.+ ...++..+. ..+.+.-||.|+|.+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g------~l~-----~~ev~~~l~--~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYD------YLP-----LEEVISALN--ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTT------SSC-----HHHHHHHHH--TSCTTCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCC------CCC-----HHHHHHHHH--hCcCCCEEEEECCCC
Confidence 555554 346799999996532111 001 234555555 244556667788764
No 311
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.76 E-value=0.0023 Score=62.21 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=30.4
Q ss_pred CCcceeCCCCCChHHHHHHHHHH---hCCcEEeecchhhc
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHA---AEASFFSLSGAELY 361 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~---~~~~~~~~~~~~~~ 361 (611)
.-++|.|+||+|||++|+.++.. .|..++.++...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 35889999999999999999998 68888766665544
No 312
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.75 E-value=0.0013 Score=60.45 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
+..|+|.|+||+||||+++.+++.++..++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 4679999999999999999999999866543
No 313
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.75 E-value=0.0012 Score=71.99 Aligned_cols=32 Identities=34% Similarity=0.535 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVI 84 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v 84 (611)
...+++.||||||||+++.+++..+ +..+..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3689999999999999999998755 5555444
No 314
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.74 E-value=0.0012 Score=61.81 Aligned_cols=34 Identities=32% Similarity=0.545 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcccccc
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH 90 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~~ 90 (611)
.|+|.||||+||+|.++.+++.++.+. ++..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 588999999999999999999998764 5544443
No 315
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.74 E-value=0.0013 Score=64.04 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=42.3
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHhC----CcEEeecchhh---c--------cccccchHHHHHHHHHHHHhcCCcE
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAAE----ASFFSLSGAEL---Y--------SMYVGESEALLRNTFQRARLAAPSI 386 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~~----~~~~~~~~~~~---~--------~~~~g~~~~~~~~~~~~a~~~~p~i 386 (611)
.+..-+++.||+|+||||+.++++.... ..++ +...++ . ....|.....++..+..+-...|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 4455688999999999999999998752 2222 211111 0 0001111122344555555568999
Q ss_pred EEEccc
Q 007255 387 IFFDEA 392 (611)
Q Consensus 387 l~iDei 392 (611)
+++||.
T Consensus 102 lllDEp 107 (261)
T 2eyu_A 102 IFVGEM 107 (261)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 999997
No 316
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.74 E-value=0.00072 Score=61.13 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=27.0
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
.++|.|+||+|||++++.+|..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 488999999999999999999999887653
No 317
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.74 E-value=0.0011 Score=62.42 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
.|+|.||||+||||+++.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 588999999999999999999998776544
No 318
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.73 E-value=0.0093 Score=56.02 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISP 86 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 86 (611)
..++++.|+||+||||++-.+|..+ |..++.+..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 3679999999999999998888765 555544443
No 319
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.73 E-value=0.0013 Score=61.35 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
.+..|+|.|+||+||||+++.+++.++..++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 34679999999999999999999999876554
No 320
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.73 E-value=0.0018 Score=65.87 Aligned_cols=79 Identities=27% Similarity=0.426 Sum_probs=50.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccccccccc----c-----------cchHHHHHHHHHHHHh
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAH----V-----------GESEKALREAFSQASS 110 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~~~~~~----~-----------~~~~~~l~~~f~~~~~ 110 (611)
|+.+...++++||||+|||+++..++..+ +..++.++........ . ......+........
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~- 137 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA- 137 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH-
Confidence 46677889999999999999999988654 5667777764321110 0 011122222222221
Q ss_pred hhhcCCCeEEEEccccccCC
Q 007255 111 HALSGKPSVVFIDEIDALCP 130 (611)
Q Consensus 111 ~~~~~~~~il~IDeid~l~~ 130 (611)
....+.+|+||.+..+.+
T Consensus 138 --~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 --RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp --HHTCCSEEEEECGGGCCC
T ss_pred --hccCCCEEEEcCHHHhcc
Confidence 123578999999988875
No 321
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.72 E-value=0.0014 Score=61.07 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~ 82 (611)
++..+.|.||+|+||||+++.++..+|..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 4578999999999999999999999975443
No 322
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.72 E-value=0.0014 Score=59.44 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=26.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~ 82 (611)
+..++|+||+|+||||+++.++..+|..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 467999999999999999999999876544
No 323
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.71 E-value=0.0016 Score=62.44 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=27.9
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEeecch
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA 358 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~ 358 (611)
.++++||+|+|||.++.+++...+..++.+.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999998887777666554
No 324
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.71 E-value=0.0013 Score=62.02 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
.|+|.||||+||||+++.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 588999999999999999999998776543
No 325
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.71 E-value=0.0013 Score=59.03 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
.|+|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58999999999999999999999977654
No 326
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.71 E-value=0.0008 Score=63.69 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=27.4
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
..++|.|+||+||||+++.+|..++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4588999999999999999999999877654
No 327
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.70 E-value=0.0029 Score=64.26 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=32.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEcccc
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---------GAHLTVISPHS 88 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l---------~~~~~~v~~~~ 88 (611)
|+.+..-++|+||||+|||+++..+|... +...++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56677789999999999999999998862 45667776554
No 328
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.70 E-value=0.00077 Score=62.28 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=28.3
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCcEEeec
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~ 356 (611)
+.-++|.|+||+|||++++.+|..++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 346899999999999999999999998876543
No 329
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.69 E-value=0.00077 Score=60.86 Aligned_cols=29 Identities=28% Similarity=0.411 Sum_probs=25.5
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
-++|.||||+|||++|+.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 3789999999999999999 8889887654
No 330
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.66 E-value=0.0012 Score=61.48 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=27.8
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
+.-++|.|++|+|||++++.++..++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 34689999999999999999999998877654
No 331
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.66 E-value=0.0008 Score=62.05 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=26.9
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
.-++|.|+||+|||++|+.++..++.+++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 4588999999999999999999999876543
No 332
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.66 E-value=0.018 Score=59.90 Aligned_cols=36 Identities=33% Similarity=0.483 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPH 87 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 87 (611)
+|..++++|++|+||||++..+|..+ |..+..+++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46789999999999999999998766 5556555544
No 333
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.65 E-value=0.00079 Score=61.70 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=26.7
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
..++|.|+||+||||+++.+|..++.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 3588999999999999999999998776543
No 334
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.65 E-value=0.0026 Score=63.46 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=29.5
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEeecc
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSLSG 357 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~ 357 (611)
..++++||+|+|||+++..+|..++..++..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 358899999999999999999999988888754
No 335
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.65 E-value=0.0099 Score=61.87 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPH 87 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 87 (611)
++..++++||+|+||||++..+|..+ +..+..+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 46789999999999999999998766 5555555543
No 336
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.64 E-value=0.0039 Score=62.40 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH 87 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~ 87 (611)
++.|+|+||+|+|||+++..+|+.++..++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 45799999999999999999999999877665543
No 337
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.64 E-value=0.0017 Score=59.08 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISP 86 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 86 (611)
.+..+.|.|++|+||||+++.++..+ |.+++.++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 45689999999999999999999988 888877664
No 338
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.64 E-value=0.0023 Score=67.69 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=28.9
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh----CCcEEeec
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA----EASFFSLS 356 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----~~~~~~~~ 356 (611)
|+++..-+++.|+||+|||+++..+|... |.++..++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 66777778999999999999999988754 44555444
No 339
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.63 E-value=0.0065 Score=64.23 Aligned_cols=38 Identities=16% Similarity=0.384 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEcc
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC----GAHLTVISP 86 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~ 86 (611)
|+.+..-+++.|+||+|||+++..+|..+ |.++..++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 67788889999999999999999987654 446666664
No 340
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.63 E-value=0.0017 Score=59.58 Aligned_cols=28 Identities=32% Similarity=0.685 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGAHL 81 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~~~ 81 (611)
++|+|+||+|+|||||++.+.+.....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5799999999999999999998875544
No 341
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.62 E-value=0.00078 Score=63.65 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=27.4
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
..++|.|+||+|||++++.+|..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 3588999999999999999999999887654
No 342
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.61 E-value=0.0011 Score=62.34 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=31.5
Q ss_pred CCCCCCcceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 321 ISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 321 ~~~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
...++-++|.||||+||+|.|+.||..++.+. ++.++++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 34456688999999999999999999998665 55555553
No 343
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.61 E-value=0.00082 Score=63.95 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=27.8
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
+..++|.||||+|||++++.+|..++..++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 34689999999999999999999999877654
No 344
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.61 E-value=0.0076 Score=64.04 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=48.9
Q ss_pred Cc-EEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCc--ccchhccCCCCccceeecCC
Q 007255 384 PS-IIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPH--AIDAALMRPGRFDLVLYVPP 460 (611)
Q Consensus 384 p~-il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~--~ld~al~r~gRf~~~i~~~~ 460 (611)
|. +++|||...+.... ... ...++..+-.....-++.+|.+|.+|. .++..++. .|...|.|..
T Consensus 297 P~ivlvIDE~~~ll~~~----------~~~-~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV----------GKK-VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH----------HHH-HHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh----------hHH-HHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 44 89999998775310 111 222333222112334688888999987 47776665 6777888888
Q ss_pred CCHHHHHHHHH
Q 007255 461 PDLEARHEILR 471 (611)
Q Consensus 461 p~~~~r~~il~ 471 (611)
.+..+...|+.
T Consensus 364 ~s~~dsr~ilg 374 (512)
T 2ius_A 364 SSKIDSRTILD 374 (512)
T ss_dssp SSHHHHHHHHS
T ss_pred CCHHHHHHhcC
Confidence 99988888876
No 345
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.61 E-value=0.001 Score=59.75 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=26.3
Q ss_pred cceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 327 ALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 327 ~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
++|.|+||+|||++++.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 78999999999999999999999887654
No 346
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.59 E-value=0.00099 Score=62.76 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=26.0
Q ss_pred cceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 327 ALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 327 ~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
++|.||||+|||++|+.+|..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999998877654
No 347
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.59 E-value=0.00063 Score=61.66 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=18.2
Q ss_pred CCCCCcceeCCCCCChHHHHHH
Q 007255 322 SPVRGALLHGPPGCSKTTLAKA 343 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~a 343 (611)
.++.-+.|.||+|+|||+++++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3444578999999999999994
No 348
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.59 E-value=0.013 Score=57.41 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=24.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l 77 (611)
|+.....++|+||+|+|||+++..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 55666789999999999999999988644
No 349
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.57 E-value=0.0012 Score=66.63 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=27.4
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
.+++|+||||+|||++++++|..++.+|+.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 3589999999999999999999998888553
No 350
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.57 E-value=0.0078 Score=61.16 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=25.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l 77 (611)
|+++..-+.|+||||+|||++++.++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56667789999999999999999999876
No 351
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.57 E-value=0.0011 Score=62.47 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=26.0
Q ss_pred cceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 327 ALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 327 ~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
++|.||||+|||++|+.+|..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 68999999999999999999999877654
No 352
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.57 E-value=0.0012 Score=63.18 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=27.5
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
..++|.|+||+|||++|+.+|..++..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4589999999999999999999999877654
No 353
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.56 E-value=0.01 Score=61.37 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=30.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEcccc
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---------GAHLTVISPHS 88 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l---------~~~~~~v~~~~ 88 (611)
|+.+..-++|+||||+|||+++..++-.. +...++++...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 66777889999999999999999776432 23466666543
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.56 E-value=0.0011 Score=60.95 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=27.2
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
.-++|.|+||+|||++++.++..++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4588999999999999999999999777654
No 355
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.56 E-value=0.0017 Score=61.07 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
.|+|.|+||+||||+++.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 589999999999999999999998776544
No 356
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.55 E-value=0.0038 Score=62.07 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=44.0
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhhcc--------------------ccccchHHHHHHHHHH
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYS--------------------MYVGESEALLRNTFQR 378 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~~~--------------------~~~g~~~~~~~~~~~~ 378 (611)
.++.-+++.||+|+|||+++..+|..+ +..+..+....... ...++........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 445668899999999999999999776 44444333211100 0111222222334445
Q ss_pred HHhcCCcEEEEcccc
Q 007255 379 ARLAAPSIIFFDEAD 393 (611)
Q Consensus 379 a~~~~p~il~iDeid 393 (611)
+....|++++||+.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 566788999999874
No 357
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.55 E-value=0.00096 Score=63.22 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=27.5
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
+..++|.||||+|||++++.+|..++..++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 34689999999999999999999999766543
No 358
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.55 E-value=0.0017 Score=60.32 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC-GAHLTVIS 85 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l-~~~~~~v~ 85 (611)
.+..|+|.|++|+||||+++.+++.+ |.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 35689999999999999999999998 46666543
No 359
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.55 E-value=0.001 Score=61.60 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=27.0
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
.-++|.|+||+|||++|+.+|..++..++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4588999999999999999999999776544
No 360
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.54 E-value=0.00071 Score=61.55 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=24.1
Q ss_pred CCcceeCCCCCChHHHHHHHHH-HhCCcEEe
Q 007255 325 RGALLHGPPGCSKTTLAKAAAH-AAEASFFS 354 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~-~~~~~~~~ 354 (611)
.-++|.||||+|||++|+.++. ..+..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 3478999999999999999998 45554443
No 361
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.53 E-value=0.00093 Score=61.41 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhC
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAE 349 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~ 349 (611)
.-++|.||||+|||++++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999887
No 362
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.51 E-value=0.0014 Score=61.28 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=28.1
Q ss_pred cceeCCCCCChHHHHHHHHHHhCCcEEeecchhhcc
Q 007255 327 ALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (611)
Q Consensus 327 ~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~~~~~ 362 (611)
++|.||||+||+|.|+.||..+|.+. ++.++++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 67899999999999999999998765 45555543
No 363
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.51 E-value=0.0068 Score=60.26 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISP 86 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 86 (611)
..+..++++||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 356789999999999999999998766 445554443
No 364
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.50 E-value=0.0019 Score=59.93 Aligned_cols=28 Identities=18% Similarity=0.529 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~~~~ 82 (611)
.|+|.|++|+||||+++.+++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 5889999999999999999999998654
No 365
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.50 E-value=0.00094 Score=68.29 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=22.5
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHh
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAA 348 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~ 348 (611)
.+..-+.|.||+||||||+.+++|...
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 344457899999999999999999755
No 366
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.50 E-value=0.0015 Score=59.29 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=26.6
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCcEEe
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~ 354 (611)
+..++|.||+|+|||++++.++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3458899999999999999999998876654
No 367
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.49 E-value=0.0011 Score=60.53 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=22.5
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEE
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFF 353 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~ 353 (611)
.-++|.|+||+|||++|+.++..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45889999999999999999999998876
No 368
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.49 E-value=0.022 Score=65.08 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=35.4
Q ss_pred CCcHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 007255 22 GGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRE 76 (611)
Q Consensus 22 ~G~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~ 76 (611)
+|.++.++.|.+.+... ...+-+.++|+.|+|||++|+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999999887431 12468999999999999999998853
No 369
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.48 E-value=0.0051 Score=59.76 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 007255 50 LKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (611)
Q Consensus 50 ~~~~~~iLl~Gp~GtGKT~la~~la~~l 77 (611)
+.+...++|+||+|+||||+++.++..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3455789999999999999999998865
No 370
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.47 E-value=0.0013 Score=61.24 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.4
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEeec
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~ 356 (611)
.-++|.|+||+|||++++.++..++..++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 35789999999999999999999998776543
No 371
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.46 E-value=0.0017 Score=59.15 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=31.1
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhh
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAEL 360 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~ 360 (611)
+..+.|.|++|+|||++++.++..+ |.+++.++...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 3457899999999999999999988 888887775544
No 372
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.46 E-value=0.006 Score=57.70 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=25.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l 77 (611)
|+.+..-+.|+||+|+||||+++.++..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56677889999999999999999999854
No 373
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.46 E-value=0.0013 Score=63.26 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=28.1
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
++..++|.||||+|||++|+.++..++..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 445689999999999999999999998776544
No 374
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.46 E-value=0.0023 Score=60.73 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=25.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~~~~ 82 (611)
.|+|.|+||+||||+++.+++.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 5899999999999999999999986544
No 375
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.45 E-value=0.0056 Score=64.52 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=29.2
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh----CCcEEeecc
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA----EASFFSLSG 357 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----~~~~~~~~~ 357 (611)
|+++..-+++.|+||+|||++|..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 67777778999999999999999888654 445555443
No 376
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.44 E-value=0.0018 Score=60.30 Aligned_cols=32 Identities=31% Similarity=0.487 Sum_probs=26.8
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHhCCcEEe
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~ 354 (611)
++.-+.|.||+|+|||++++.++..+|..++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 34568899999999999999999999766543
No 377
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.41 E-value=0.0027 Score=58.34 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEc
Q 007255 55 GLLLYGPPGTGKTSLVRAVVREC---GAHLTVIS 85 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~ 85 (611)
.|+|.|++|+||||+++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 58899999999999999999988 77776553
No 378
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.41 E-value=0.0014 Score=60.22 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECG 78 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~ 78 (611)
.|+|.|+||+||||+++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
No 379
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.40 E-value=0.017 Score=57.15 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.4
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHh
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAA 348 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~ 348 (611)
.+..++|.||+|+|||+++..+|..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35568899999999999999999765
No 380
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.39 E-value=0.0026 Score=60.20 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~ 82 (611)
+..+.|.||+|+||||+++.+++.++.+++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999997654
No 381
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.38 E-value=0.0028 Score=60.22 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
.+..+.|.||+|+||||+++.+++.++..++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 35689999999999999999999999976543
No 382
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.38 E-value=0.0032 Score=58.48 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=27.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEc
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVIS 85 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~ 85 (611)
.++..+.|.||+|+||||+++.++..+ |...+.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 356789999999999999999999988 44433444
No 383
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.38 E-value=0.009 Score=59.82 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=28.7
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeec
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLS 356 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~ 356 (611)
|+++..-+++.|+||+|||+++..+|... +.++..++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 67777779999999999999999998654 34444443
No 384
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.35 E-value=0.0083 Score=55.70 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=16.0
Q ss_pred CCcceeCCCCCChHHHHHH
Q 007255 325 RGALLHGPPGCSKTTLAKA 343 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~a 343 (611)
+.+++.+|+|+|||..+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999987443
No 385
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.35 E-value=0.0024 Score=59.73 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAH 80 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~ 80 (611)
+..|+|.|+||+||||+++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4679999999999999999999998763
No 386
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.35 E-value=0.0026 Score=61.29 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHL 81 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~ 81 (611)
.+..++|.||+|+||||+++.+++.+|...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 357899999999999999999999998654
No 387
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.35 E-value=0.0095 Score=62.76 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEcc
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC----GAHLTVISP 86 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~ 86 (611)
|+.+..-+++.|+||+|||+++..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 67787889999999999999999887654 456666654
No 388
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.34 E-value=0.024 Score=56.61 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=31.1
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 007255 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISP 86 (611)
Q Consensus 48 ~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 86 (611)
.|+.+..-+++.|+||+|||+++..+|... +.+.+.++.
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 367788889999999999999999988654 345666654
No 389
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.34 E-value=0.0028 Score=62.49 Aligned_cols=38 Identities=24% Similarity=0.474 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV 89 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~ 89 (611)
.+.-++++||+|+|||+++..+|+.++..++..+.-++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 34678999999999999999999999987776655444
No 390
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.33 E-value=0.003 Score=58.27 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEc
Q 007255 55 GLLLYGPPGTGKTSLVRAVVREC---GAHLTVIS 85 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~ 85 (611)
-|.|.|++|+||||+++.+++.+ |.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 47899999999999999999998 88776543
No 391
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.32 E-value=0.0017 Score=61.16 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=26.2
Q ss_pred cceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 327 ALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 327 ~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
++|.||||+|||++++.+|..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999999877655
No 392
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.29 E-value=0.0016 Score=63.53 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=22.4
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHh
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAA 348 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~ 348 (611)
.+..-+.|.||+|+|||||+++++...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 444557899999999999999999654
No 393
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0027 Score=57.88 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECG 78 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~ 78 (611)
....+.|+||+|+||||+++.++..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346799999999999999999998764
No 394
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.28 E-value=0.0016 Score=66.07 Aligned_cols=112 Identities=24% Similarity=0.282 Sum_probs=0.0
Q ss_pred hcCCCCCCCcceeCCCCCChHHHHHHHH----------------------------------------------------
Q 007255 318 RLGISPVRGALLHGPPGCSKTTLAKAAA---------------------------------------------------- 345 (611)
Q Consensus 318 ~~~~~~~~~~Ll~Gp~G~GKT~la~ala---------------------------------------------------- 345 (611)
.+.+.+..-+.|.||+||||||+.+++|
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~ 103 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAY 103 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHH
Q ss_pred -------------HHhCCcEEeecchhhccccccchHHHHHHHHHHHHh--cCCcEEEEcccccccccCCCCCCCCcchh
Q 007255 346 -------------HAAEASFFSLSGAELYSMYVGESEALLRNTFQRARL--AAPSIIFFDEADVVGAKRGGSSSTSITVG 410 (611)
Q Consensus 346 -------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~ 410 (611)
.....-+-.+...++..++..+...-.++-...|+. ..|.+|++|| ......
T Consensus 104 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDE-------------Pts~LD 170 (359)
T 3fvq_A 104 GLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDE-------------PFSALD 170 (359)
T ss_dssp TSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-------------TTTTSC
T ss_pred HHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC-------------CcccCC
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEecCCCccc
Q 007255 411 ERLLSTLLTEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 411 ~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
......+...+..+....+..+|.+|...+++
T Consensus 171 ~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea 202 (359)
T 3fvq_A 171 EQLRRQIREDMIAALRANGKSAVFVSHDREEA 202 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
No 395
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.26 E-value=0.0026 Score=59.26 Aligned_cols=29 Identities=31% Similarity=0.554 Sum_probs=25.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGA 79 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~ 79 (611)
..+..++|+||||+||||+++.+++.++.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCcc
Confidence 45678999999999999999999998853
No 396
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.25 E-value=0.0032 Score=60.75 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=28.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
...+.|.|++|+||||+++.+|+.++..++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 46899999999999999999999999876653
No 397
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.25 E-value=0.0023 Score=65.72 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=43.7
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHhC----CcEEeecc-hhhc-c---ccccc-----hHHHHHHHHHHHHhcCCc
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAE----ASFFSLSG-AELY-S---MYVGE-----SEALLRNTFQRARLAAPS 385 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~~----~~~~~~~~-~~~~-~---~~~g~-----~~~~~~~~~~~a~~~~p~ 385 (611)
...+...+++.||+|+||||++++++..+. ..++.+.. .++. . .++.+ ....+...+..+-...|+
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd 211 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 211 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCS
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcC
Confidence 345556689999999999999999998762 33332221 1110 0 01111 111223344444456899
Q ss_pred EEEEcccc
Q 007255 386 IIFFDEAD 393 (611)
Q Consensus 386 il~iDeid 393 (611)
+|++||+-
T Consensus 212 ~illdE~~ 219 (372)
T 2ewv_A 212 VIFVGEMR 219 (372)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99999983
No 398
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.24 E-value=0.0027 Score=59.05 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=29.6
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhh
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAEL 360 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~ 360 (611)
.++.-+.|.||+|+|||++++++|..+ |...+.++..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 344568899999999999999999988 544345555544
No 399
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.22 E-value=0.0025 Score=59.29 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=25.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~v 84 (611)
.|.|.|++|+||||+++.+++ +|.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 588999999999999999999 88665543
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.18 E-value=0.0027 Score=60.15 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=25.5
Q ss_pred cceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 327 ALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 327 ~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
++|.||||+||||+++.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 68999999999999999999998766543
No 401
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.17 E-value=0.0055 Score=67.25 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=19.7
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA 348 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~ 348 (611)
+.+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 458999999999999888776544
No 402
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.17 E-value=0.0021 Score=59.04 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=22.0
Q ss_pred CcceeCCCCCChHHHHHHHHHHhC
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAE 349 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~ 349 (611)
-++|.|+||+|||++++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999886
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.17 E-value=0.0028 Score=61.14 Aligned_cols=33 Identities=33% Similarity=0.396 Sum_probs=29.1
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCcEEeec
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~ 356 (611)
...+.|.||+|+|||++++.+|..++.+++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 456999999999999999999999999887643
No 404
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.16 E-value=0.0072 Score=68.19 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=33.5
Q ss_pred cccccccchhHHHHHHHHHhhccCCChh-HHhhcCCCCCCCcceeCCCCCChHHHHHHHHHH
Q 007255 287 VTWEDIGGLRDLKKKLQQAVEWPIKHST-AFSRLGISPVRGALLHGPPGCSKTTLAKAAAHA 347 (611)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~-~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~ 347 (611)
..|+++.-.+.+.+.+.+.-..|..... .+.. .+.....+++.||+|+|||+++..+...
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~-~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLK-LYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHH-HHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3466655555555555544444432211 1111 1122346899999999999977766544
No 405
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.15 E-value=0.0032 Score=57.91 Aligned_cols=30 Identities=23% Similarity=0.062 Sum_probs=26.8
Q ss_pred cceeCCCCCChHHHHHHHHHHh---CCcEEeec
Q 007255 327 ALLHGPPGCSKTTLAKAAAHAA---EASFFSLS 356 (611)
Q Consensus 327 ~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~ 356 (611)
+.|.|+||+|||++++.++..+ |.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6799999999999999999988 88887664
No 406
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.13 E-value=0.0037 Score=61.74 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=29.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV 89 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~ 89 (611)
+.-+++.||+|+|||+++..+|+.++..++..+.-++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Qv 39 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQV 39 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccc
Confidence 3568899999999999999999999876665554433
No 407
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.12 E-value=0.0029 Score=59.19 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=25.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAH 80 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~ 80 (611)
.+..|+|.|++|+||||+++.+++.++..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999987543
No 408
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.12 E-value=0.0029 Score=58.69 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=25.4
Q ss_pred cceeCCCCCChHHHHHHHHHHhCCcEEe
Q 007255 327 ALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (611)
Q Consensus 327 ~Ll~Gp~G~GKT~la~ala~~~~~~~~~ 354 (611)
+.|.|++|+||||+++.+|..++..++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 6799999999999999999999987654
No 409
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.12 E-value=0.0031 Score=59.75 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=25.8
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEe
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~ 354 (611)
.+.|.||+|+||||+++.++..++.+++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 47899999999999999999999977654
No 410
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.11 E-value=0.0051 Score=59.45 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=32.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc--------EEEEccccccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAH--------LTVISPHSVHK 91 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~--------~~~v~~~~~~~ 91 (611)
.+..|.|.|++|+||||+++.+++.++.+ ...++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 45679999999999999999999998865 44566666543
No 411
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.09 E-value=0.0019 Score=65.54 Aligned_cols=111 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred cCCCCCCCcceeCCCCCChHHHHHHHH-----------------------------------------------------
Q 007255 319 LGISPVRGALLHGPPGCSKTTLAKAAA----------------------------------------------------- 345 (611)
Q Consensus 319 ~~~~~~~~~Ll~Gp~G~GKT~la~ala----------------------------------------------------- 345 (611)
+.+.+..-+.|.||+|||||||.+++|
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~ 115 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK 115 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Q ss_pred --------HHhCCcEEeecchhhccccccchHHHHHHHHHHHHh--cCCcEEEEcccccccccCCCCCCCCcchhHHHHH
Q 007255 346 --------HAAEASFFSLSGAELYSMYVGESEALLRNTFQRARL--AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLS 415 (611)
Q Consensus 346 --------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 415 (611)
.....-+-.+...++..++..+...--++-...|+. ..|.++++|| ...........
T Consensus 116 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE-------------P~s~LD~~~r~ 182 (355)
T 1z47_A 116 RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDE-------------PFAAIDTQIRR 182 (355)
T ss_dssp TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-------------TTCCSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-------------CcccCCHHHHH
Q ss_pred HHHHHhcCCCCCCCeEEEEecCCCccc
Q 007255 416 TLLTEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 416 ~ll~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
.+...+..+....+..+|.+|...+++
T Consensus 183 ~l~~~l~~l~~~~g~tvi~vTHd~~~a 209 (355)
T 1z47_A 183 ELRTFVRQVHDEMGVTSVFVTHDQEEA 209 (355)
T ss_dssp HHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEECCCHHHH
No 412
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.08 E-value=0.0043 Score=57.25 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
..|.|.|++||||||+++.+++.+|.+++.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 468899999999999999999998877554
No 413
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.08 E-value=0.0031 Score=59.08 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECG 78 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~ 78 (611)
.+..|+|.|++|+||||+++.+++.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999874
No 414
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.07 E-value=0.0031 Score=58.53 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=27.1
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh-CCcEEeec
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA-EASFFSLS 356 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~-~~~~~~~~ 356 (611)
.-+.|.|++|+||||+++.++..+ |.+++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 458899999999999999999998 57776554
No 415
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.05 E-value=0.0038 Score=58.15 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
..+.|.||+|+||||+++.++. +|..++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3688999999999999999988 7776553
No 416
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.05 E-value=0.0054 Score=57.03 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 55 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
.|.|.|++|+||||+++.+++.++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 78999999999999999999999977654
No 417
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.05 E-value=0.0022 Score=65.18 Aligned_cols=111 Identities=22% Similarity=0.217 Sum_probs=0.0
Q ss_pred cCCCCCCCcceeCCCCCChHHHHHHHH-----------------------------------------------------
Q 007255 319 LGISPVRGALLHGPPGCSKTTLAKAAA----------------------------------------------------- 345 (611)
Q Consensus 319 ~~~~~~~~~Ll~Gp~G~GKT~la~ala----------------------------------------------------- 345 (611)
+.+.+..-+.|.||+||||||+.+++|
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR 103 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Q ss_pred --------HHhCCcEEeecchhhccccccchHHHHHHHHHHHHh--cCCcEEEEcccccccccCCCCCCCCcchhHHHHH
Q 007255 346 --------HAAEASFFSLSGAELYSMYVGESEALLRNTFQRARL--AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLS 415 (611)
Q Consensus 346 --------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 415 (611)
.....-+-.+...++..++.++-..--++-...|+. ..|.++++|| ...........
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE-------------P~s~LD~~~r~ 170 (359)
T 2yyz_A 104 RISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE-------------PLSNLDANLRM 170 (359)
T ss_dssp CSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-------------TTTTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC-------------CcccCCHHHHH
Q ss_pred HHHHHhcCCCCCCCeEEEEecCCCccc
Q 007255 416 TLLTEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 416 ~ll~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
.+...+..+....+..+|.+|...+.+
T Consensus 171 ~l~~~l~~l~~~~g~tvi~vTHd~~~~ 197 (359)
T 2yyz_A 171 IMRAEIKHLQQELGITSVYVTHDQAEA 197 (359)
T ss_dssp HHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCHHHH
No 418
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.04 E-value=0.0026 Score=59.15 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=25.7
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEeec
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~ 356 (611)
.+.|.|++|+|||++++.+|. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 378999999999999999999 887776544
No 419
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.03 E-value=0.0048 Score=57.15 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=25.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~ 82 (611)
.+..|.|.|++|+||||+++.+++. |..++
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 3567999999999999999999998 76654
No 420
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.03 E-value=0.0039 Score=58.35 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGA 79 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~ 79 (611)
++.-++|+||+|+||||+++.++..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4567999999999999999999998754
No 421
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.03 E-value=0.0056 Score=59.17 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=26.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~ 82 (611)
...+.|.||+|+||||+++.+++.+|..++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 457999999999999999999999997654
No 422
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.03 E-value=0.012 Score=56.24 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=29.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH----hCCcEEEEcc
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRE----CGAHLTVISP 86 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~----l~~~~~~v~~ 86 (611)
|+.+..-++++|+||+|||+++..+|.. .+.+++.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5677788999999999999999877543 3556666654
No 423
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.03 E-value=0.0028 Score=64.42 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=22.5
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHh
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAA 348 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~ 348 (611)
.+..-+-|.||+|+|||||.++++...
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 444557899999999999999999654
No 424
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.02 E-value=0.0054 Score=57.45 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=30.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEcccc
Q 007255 50 LKWPRGLLLYGPPGTGKTSLVRAVVRECG----AHLTVISPHS 88 (611)
Q Consensus 50 ~~~~~~iLl~Gp~GtGKT~la~~la~~l~----~~~~~v~~~~ 88 (611)
...+..++|.|++|+||||+++.+++.++ .+++.++...
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 34567899999999999999999998775 4567776443
No 425
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.02 E-value=0.0027 Score=62.16 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred cCCCCCCCcceeCCCCCChHHHHHHHH-----------------------------------------------------
Q 007255 319 LGISPVRGALLHGPPGCSKTTLAKAAA----------------------------------------------------- 345 (611)
Q Consensus 319 ~~~~~~~~~Ll~Gp~G~GKT~la~ala----------------------------------------------------- 345 (611)
+.+.+..-+.|.||+|+||||++++++
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~ 108 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF 108 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHH
Q ss_pred -------------HHhCCcEEeecchhhccccccchHHHHHHHHHHHHh--cCCcEEEEcccccccccCCCCCCCCcchh
Q 007255 346 -------------HAAEASFFSLSGAELYSMYVGESEALLRNTFQRARL--AAPSIIFFDEADVVGAKRGGSSSTSITVG 410 (611)
Q Consensus 346 -------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~ 410 (611)
.....-+-.+...++..++.+....-.++-...|+. ..|.+|++|| ......
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDE-------------Pts~LD 175 (275)
T 3gfo_A 109 GAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDE-------------PTAGLD 175 (275)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEEC-------------TTTTCC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC-------------ccccCC
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEecCCCccc
Q 007255 411 ERLLSTLLTEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 411 ~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
......++..+..+....+..+|.+|...+.+
T Consensus 176 ~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 176 PMGVSEIMKLLVEMQKELGITIIIATHDIDIV 207 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
No 426
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.01 E-value=0.0038 Score=59.33 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=26.3
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEe
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~ 354 (611)
..+.|.||+|+|||++++.+|..++..++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458899999999999999999999977644
No 427
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.00 E-value=0.012 Score=53.99 Aligned_cols=35 Identities=29% Similarity=0.246 Sum_probs=26.3
Q ss_pred CceEEEEcCCCCcHH-HHHHHHHHHh--CCcEEEEccc
Q 007255 53 PRGLLLYGPPGTGKT-SLVRAVVREC--GAHLTVISPH 87 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT-~la~~la~~l--~~~~~~v~~~ 87 (611)
..-.+++||.|+||| .|++++.+.. +..++.+.+.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 356899999999999 8888886643 5666666533
No 428
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.00 E-value=0.0058 Score=57.51 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=25.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
+..|.|.|++|+||||+++.+++ +|.+++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 46799999999999999999998 7776544
No 429
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.99 E-value=0.0024 Score=63.92 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=30.0
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEeecch
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA 358 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~ 358 (611)
.-++|.||+|+|||+|+..||..++..++..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3588999999999999999999999888876654
No 430
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.99 E-value=0.019 Score=65.52 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=55.2
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh-----CCcE----E----------eecchhhccccccchHHHHHHHHHHHH-hcC
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA-----EASF----F----------SLSGAELYSMYVGESEALLRNTFQRAR-LAA 383 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~----~----------~~~~~~~~~~~~g~~~~~~~~~~~~a~-~~~ 383 (611)
..-++|.||.|+|||++.+.++... +..+ . .+...+............++++...++ ...
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~ 752 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATS 752 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccC
Confidence 3457899999999999999987432 2211 1 111111111111222222333333332 467
Q ss_pred CcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCCCCCeEEEEecCCCcccc
Q 007255 384 PSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAID 443 (611)
Q Consensus 384 p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ld 443 (611)
|++|++||.-.= -+......+...++..+. ...+..+|.+|...+...
T Consensus 753 p~LlLLDEP~~G---------lD~~~~~~i~~~il~~L~---~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 753 QSLVILDELGRG---------TSTHDGIAIAYATLEYFI---RDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp TCEEEEESTTTT---------SCHHHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGGG
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHHHHHHHH---HhcCCeEEEEeCcHHHHH
Confidence 899999997421 111112334446666552 223456777888876554
No 431
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.99 E-value=0.0034 Score=57.89 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=25.8
Q ss_pred cceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 327 ALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 327 ~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
+.|+|++|||||++++.++..+|++++..
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 67899999999999999999989887654
No 432
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.98 E-value=0.0042 Score=57.23 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=25.7
Q ss_pred cceeCCCCCChHHHHHHHHHHh---CCcEEeec
Q 007255 327 ALLHGPPGCSKTTLAKAAAHAA---EASFFSLS 356 (611)
Q Consensus 327 ~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~ 356 (611)
+.|.|++|+||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6789999999999999999998 88887553
No 433
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.98 E-value=0.004 Score=57.87 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVREC 77 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l 77 (611)
.++..+.|.||+|+||||+++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 355789999999999999999999987
No 434
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.97 E-value=0.0077 Score=60.51 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRE 76 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~ 76 (611)
|+++..-++++||||+|||+++..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5666778999999999999999999875
No 435
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.96 E-value=0.034 Score=52.08 Aligned_cols=60 Identities=13% Similarity=0.054 Sum_probs=33.8
Q ss_pred cccccccchhHHHHHHHHHhh-ccCCChh-HHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh
Q 007255 287 VTWEDIGGLRDLKKKLQQAVE-WPIKHST-AFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (611)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~ 348 (611)
.+|+++.-.+.+.+.+.+.-. .|..++. .+..+ ...+.+++.+|+|+|||..+...+...
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~--~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA--ILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--hCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 457777656666666655311 1111111 11111 112569999999999998776655444
No 436
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.96 E-value=0.0053 Score=57.18 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=24.3
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHhC
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~~ 349 (611)
..+.-++|.||||+|||++++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4456688999999999999999999875
No 437
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.96 E-value=0.0023 Score=65.17 Aligned_cols=111 Identities=22% Similarity=0.216 Sum_probs=0.0
Q ss_pred cCCCCCCCcceeCCCCCChHHHHHHHH-----------------------------------------------------
Q 007255 319 LGISPVRGALLHGPPGCSKTTLAKAAA----------------------------------------------------- 345 (611)
Q Consensus 319 ~~~~~~~~~Ll~Gp~G~GKT~la~ala----------------------------------------------------- 345 (611)
+.+.+..-+.|.||+||||||+.+++|
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR 103 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc
Q ss_pred --------HHhCCcEEeecchhhccccccchHHHHHHHHHHHHh--cCCcEEEEcccccccccCCCCCCCCcchhHHHHH
Q 007255 346 --------HAAEASFFSLSGAELYSMYVGESEALLRNTFQRARL--AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLS 415 (611)
Q Consensus 346 --------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 415 (611)
.....-+-.+...++..++..+-..--++-...|+. ..|.++++|| ...........
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE-------------P~s~LD~~~r~ 170 (362)
T 2it1_A 104 KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE-------------PLSNLDALLRL 170 (362)
T ss_dssp TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-------------GGGGSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC-------------ccccCCHHHHH
Q ss_pred HHHHHhcCCCCCCCeEEEEecCCCccc
Q 007255 416 TLLTEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 416 ~ll~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
.+...+..+....+..+|.+|...+++
T Consensus 171 ~l~~~l~~l~~~~g~tvi~vTHd~~~a 197 (362)
T 2it1_A 171 EVRAELKRLQKELGITTVYVTHDQAEA 197 (362)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCHHHH
No 438
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.95 E-value=0.011 Score=55.34 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=30.7
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHhC----CcEEeecchhhc
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAAE----ASFFSLSGAELY 361 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~~----~~~~~~~~~~~~ 361 (611)
..+.-++|.|++|+|||++++.++..++ .+++.++...+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 3445688999999999999999998764 557777655543
No 439
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.93 E-value=0.007 Score=55.87 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECG 78 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~ 78 (611)
.+..++|+||+|+||||+++.+++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999998865
No 440
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.90 E-value=0.0059 Score=55.86 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECG---AHLTVIS 85 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~---~~~~~v~ 85 (611)
.+..++|.|++|+||||+++.++..++ ..+..++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 457899999999999999999999874 3344444
No 441
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.83 E-value=0.0036 Score=58.37 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=24.2
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEe
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~ 354 (611)
.+.|.||+|+||||+++.+|. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 367899999999999999998 7877754
No 442
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.82 E-value=0.013 Score=57.87 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=27.2
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEeecc
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSG 357 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~ 357 (611)
-+++.||+|+|||++|..+|..++..+++.+.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 47789999999999999999999877765544
No 443
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.82 E-value=0.0059 Score=61.25 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEc
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTVIS 85 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 85 (611)
..|++.||+|+|||++++.+|+.++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 47899999999999999999999996555444
No 444
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.82 E-value=0.0049 Score=57.18 Aligned_cols=27 Identities=37% Similarity=0.755 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECG 78 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~ 78 (611)
++..+.|+||+|+||||+++.++..+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 346799999999999999999998764
No 445
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.82 E-value=0.0066 Score=55.66 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECGA 79 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~~ 79 (611)
..++|.||+|+||||+++.++...+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 35789999999999999999986654
No 446
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.81 E-value=0.0085 Score=57.19 Aligned_cols=32 Identities=16% Similarity=0.370 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
.+..+.|.|++|+||||+++.+++.+|.+++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 45679999999999999999999999976543
No 447
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.81 E-value=0.0052 Score=57.17 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=27.2
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEeec
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~ 356 (611)
.+.|.|++|+|||++++.+|..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 4789999999999999999999998876543
No 448
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.81 E-value=0.0048 Score=60.88 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=29.3
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEeecch
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA 358 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~~ 358 (611)
.-+++.||+|+|||++|..+|..++..+++.+.-
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 4578899999999999999999999888776543
No 449
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.80 E-value=0.02 Score=53.12 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPH 87 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 87 (611)
..+.-+.+.||+|+||||+++.++..+ +..++.++..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 345679999999999999999999876 5556555433
No 450
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.80 E-value=0.027 Score=53.43 Aligned_cols=56 Identities=16% Similarity=0.032 Sum_probs=31.4
Q ss_pred CcccccccchhHHHHHHHHHhh-ccCCChh-HHhhcCCCCCCCcceeCCCCCChHHHHHH
Q 007255 286 KVTWEDIGGLRDLKKKLQQAVE-WPIKHST-AFSRLGISPVRGALLHGPPGCSKTTLAKA 343 (611)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~Ll~Gp~G~GKT~la~a 343 (611)
..+|+++.-.+.+.+.+.+.-. .+..++. .+.. +...+.+++.+|+|+|||..+-.
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGL--ALQGKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEEeCCCCcHHHHHHH
Confidence 3467777666666666655311 1111111 1111 11235799999999999986543
No 451
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.79 E-value=0.0073 Score=56.78 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
+..+.|.|++|+|||++++.+++.+|.+++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 3579999999999999999999999977554
No 452
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.77 E-value=0.0064 Score=56.42 Aligned_cols=27 Identities=41% Similarity=0.618 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECG 78 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~ 78 (611)
++.-+.|.||+|+||||+++.++..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456789999999999999999998864
No 453
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.77 E-value=0.0054 Score=56.17 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=41.3
Q ss_pred CCcceeCCCCCChH-HHHHHHHHHh--CCcEEeecchhhccccccch--H----------HHHHHHHHHHHhcCCcEEEE
Q 007255 325 RGALLHGPPGCSKT-TLAKAAAHAA--EASFFSLSGAELYSMYVGES--E----------ALLRNTFQRARLAAPSIIFF 389 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT-~la~ala~~~--~~~~~~~~~~~~~~~~~g~~--~----------~~~~~~~~~a~~~~p~il~i 389 (611)
.-.++|||.|+||| .|.+++.+.. +..++.+++. +-.+|.... . .....++... ...++|+|
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~--~~~DvIlI 97 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGI 97 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHH--HTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhc--cCCCEEEE
Confidence 34678999999999 8999888765 6677777644 111111000 0 0112223322 23569999
Q ss_pred cccccc
Q 007255 390 DEADVV 395 (611)
Q Consensus 390 Deid~l 395 (611)
||+..+
T Consensus 98 DEaQFf 103 (195)
T 1w4r_A 98 DEGQFF 103 (195)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999877
No 454
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.76 E-value=0.005 Score=59.25 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.0
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCcEE
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFF 353 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~ 353 (611)
+.-+.|.||+|+||||+++.++..+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 356889999999999999999999987654
No 455
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.75 E-value=0.0048 Score=57.54 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=25.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh-CCcE
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVREC-GAHL 81 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l-~~~~ 81 (611)
..+..+.+.|++|+||||+++.+++.+ +..+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~ 50 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSV 50 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 344678999999999999999999987 4443
No 456
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.73 E-value=0.0068 Score=62.06 Aligned_cols=34 Identities=15% Similarity=0.320 Sum_probs=28.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISP 86 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~ 86 (611)
+.-|++.||+|+|||+++..+|+.++..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3568899999999999999999999977655443
No 457
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.71 E-value=0.015 Score=59.11 Aligned_cols=70 Identities=7% Similarity=0.058 Sum_probs=36.9
Q ss_pred cccccccchhHHHHHHHHHhhc-cCCChh-HHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh-----CCcEEeecc
Q 007255 287 VTWEDIGGLRDLKKKLQQAVEW-PIKHST-AFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSG 357 (611)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~-----~~~~~~~~~ 357 (611)
.+|+++.-.+.+.+.|.+.-.. +..++. .+..+ ....+++++.+|+|+|||..+-..+... +...+.+.+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLF-LNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHH-HHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 4566665555666665543211 111111 11110 1112578999999999999876655443 344555544
No 458
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.71 E-value=0.025 Score=52.63 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.5
Q ss_pred CCcceeCCCCCChHHHHHHHHHHh
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAA 348 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~ 348 (611)
+.+++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999988877653
No 459
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.71 E-value=0.0031 Score=63.90 Aligned_cols=111 Identities=18% Similarity=0.156 Sum_probs=0.0
Q ss_pred cCCCCCCCcceeCCCCCChHHHHHHHH-----------------------------------------------------
Q 007255 319 LGISPVRGALLHGPPGCSKTTLAKAAA----------------------------------------------------- 345 (611)
Q Consensus 319 ~~~~~~~~~Ll~Gp~G~GKT~la~ala----------------------------------------------------- 345 (611)
+.+.+..-+.|.||+||||||+.+++|
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~ 100 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK 100 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Q ss_pred -----HHhCCcEEeecchhhccccccchHHHHHHHHHHHHh--cCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHH
Q 007255 346 -----HAAEASFFSLSGAELYSMYVGESEALLRNTFQRARL--AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (611)
Q Consensus 346 -----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll 418 (611)
.....-+-.+...++..++..+-..--++-...|+. ..|.++++|| ............+.
T Consensus 101 ~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDE-------------P~s~LD~~~~~~l~ 167 (348)
T 3d31_A 101 KIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDE-------------PLSALDPRTQENAR 167 (348)
T ss_dssp CCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES-------------SSTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC-------------ccccCCHHHHHHHH
Q ss_pred HHhcCCCCCCCeEEEEecCCCccc
Q 007255 419 TEMDGLEQAKGILVLAATNRPHAI 442 (611)
Q Consensus 419 ~~l~~~~~~~~~~vI~~tn~~~~l 442 (611)
..+..+....+..+|.+|...+++
T Consensus 168 ~~l~~l~~~~g~tii~vTHd~~~~ 191 (348)
T 3d31_A 168 EMLSVLHKKNKLTVLHITHDQTEA 191 (348)
T ss_dssp HHHHHHHHHTTCEEEEEESCHHHH
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHH
No 460
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.70 E-value=0.003 Score=63.72 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=44.7
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHhC--CcEEeecchhhcc-----c---cccchHHHHHHHHHHHHhcCCcEEEEccc
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAAE--ASFFSLSGAELYS-----M---YVGESEALLRNTFQRARLAAPSIIFFDEA 392 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~~--~~~~~~~~~~~~~-----~---~~g~~~~~~~~~~~~a~~~~p~il~iDei 392 (611)
+...+++.||+|+|||+++++++.... ...+.+....... . +........+..+..+-...|.++++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 345689999999999999999998873 2334443321110 0 12001223344555555678999999997
Q ss_pred c
Q 007255 393 D 393 (611)
Q Consensus 393 d 393 (611)
-
T Consensus 250 ~ 250 (330)
T 2pt7_A 250 R 250 (330)
T ss_dssp C
T ss_pred C
Confidence 4
No 461
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.70 E-value=0.012 Score=58.36 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 007255 50 LKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (611)
Q Consensus 50 ~~~~~~iLl~Gp~GtGKT~la~~la~~l 77 (611)
..++..+.|+||+|+||||+++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999875
No 462
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.70 E-value=0.048 Score=57.20 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=31.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccc
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPH 87 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 87 (611)
|+.+..-+++.|+||+|||+++-.+|... |.++..++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 67777889999999999999999887655 5677777654
No 463
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.70 E-value=0.015 Score=62.30 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHS 88 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~ 88 (611)
.+.-|+|+|.||+||||+++.+++.+ +.....++..+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 34579999999999999999999988 45555565543
No 464
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.69 E-value=0.0078 Score=55.02 Aligned_cols=38 Identities=29% Similarity=0.194 Sum_probs=28.3
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhh
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAEL 360 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~ 360 (611)
.+..++|.|+||+|||++++.+|..+ +..+..++...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 34568899999999999999999887 344555554433
No 465
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.69 E-value=0.0026 Score=59.49 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=24.0
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCc
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEAS 351 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~ 351 (611)
+.-++|.|+||+|||++++.++..++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4458899999999999999999987544
No 466
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.67 E-value=0.0026 Score=59.60 Aligned_cols=27 Identities=22% Similarity=0.126 Sum_probs=23.4
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCC
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEA 350 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~ 350 (611)
+.-++|.|+||+|||++++.++..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999998743
No 467
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.66 E-value=0.0046 Score=57.31 Aligned_cols=30 Identities=20% Similarity=0.100 Sum_probs=25.6
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
..+.|.|++|+|||++++.+|.. |.+++..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 45789999999999999999998 7776543
No 468
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.66 E-value=0.0062 Score=55.78 Aligned_cols=25 Identities=36% Similarity=0.747 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVRECG 78 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l~ 78 (611)
..+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4678999999999999999998764
No 469
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.64 E-value=0.0067 Score=60.20 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 007255 54 RGLLLYGPPGTGKTSLVRAVVREC 77 (611)
Q Consensus 54 ~~iLl~Gp~GtGKT~la~~la~~l 77 (611)
..|+|.|+||+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999999964
No 470
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.63 E-value=0.0053 Score=57.25 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=23.8
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCc
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEAS 351 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~ 351 (611)
.-++|.|+||+|||++++.++..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 347899999999999999999998763
No 471
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.60 E-value=0.028 Score=58.98 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=29.5
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecc
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSG 357 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~ 357 (611)
|+.+..-+++.|+||+|||++|..+|... |.++..++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 66777778999999999999999888765 555555543
No 472
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.60 E-value=0.0077 Score=58.15 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=30.7
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcE--------Eeecchhhcc
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASF--------FSLSGAELYS 362 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~--------~~~~~~~~~~ 362 (611)
.-+.|.|++|+|||++|+.++..++.++ ..++..++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4578999999999999999999998763 3566666654
No 473
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.59 E-value=0.028 Score=53.45 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=17.2
Q ss_pred CCcceeCCCCCChHHHHHHHH
Q 007255 325 RGALLHGPPGCSKTTLAKAAA 345 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala 345 (611)
+.+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 568999999999998666554
No 474
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.59 E-value=0.0092 Score=58.66 Aligned_cols=30 Identities=30% Similarity=0.320 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~ 83 (611)
+..|.|.|++|+||||+++.++ .+|.+++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 4579999999999999999999 57866543
No 475
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.59 E-value=0.0077 Score=58.19 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=26.2
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEe
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~ 354 (611)
..+.|.||+|+|||++++.+|..+|..++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 357899999999999999999999987653
No 476
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.59 E-value=0.012 Score=59.72 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 007255 50 LKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (611)
Q Consensus 50 ~~~~~~iLl~Gp~GtGKT~la~~la~~l 77 (611)
..++..+.|+||+|+||||+++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3456789999999999999999999876
No 477
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.57 E-value=0.054 Score=54.28 Aligned_cols=27 Identities=22% Similarity=0.084 Sum_probs=23.5
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHh
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAA 348 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~ 348 (611)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445668899999999999999999876
No 478
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.55 E-value=0.01 Score=55.36 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISP 86 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~ 86 (611)
++..+.|.||+|+||||+++.++..++..+..++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~ 39 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPM 39 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 44678999999999999999999988733334443
No 479
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.55 E-value=0.023 Score=57.64 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVREC 77 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l 77 (611)
.....++++||+|+|||++++.+++.+
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 345689999999999999999998865
No 480
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.53 E-value=0.01 Score=52.78 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=25.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l 77 (611)
.+.+...+.|.||.|+||||+++.++..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34556679999999999999999999987
No 481
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.53 E-value=0.0062 Score=61.12 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=27.6
Q ss_pred CcceeCCCCCChHHHHHHHHHHhCCcEEeecc
Q 007255 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSG 357 (611)
Q Consensus 326 ~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~~~ 357 (611)
-+++.||+|+|||++|..+|..++..++..+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 57899999999999999999999877666543
No 482
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.52 E-value=0.043 Score=62.77 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.0
Q ss_pred CCcceeCCCCCChHHHHHHHHH
Q 007255 325 RGALLHGPPGCSKTTLAKAAAH 346 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~ 346 (611)
.-++|.||.|+|||++.+.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999854
No 483
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.52 E-value=0.0076 Score=56.67 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=27.2
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
..+.|.|++|+|||++++.+|..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 3588999999999999999999999887654
No 484
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.51 E-value=0.014 Score=60.93 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=27.5
Q ss_pred CCCCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 323 PVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 323 ~~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
.+.-++++|+||+|||++|+.++..++..++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 345688999999999999999999988766543
No 485
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.49 E-value=0.0082 Score=56.59 Aligned_cols=28 Identities=29% Similarity=0.591 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 007255 50 LKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (611)
Q Consensus 50 ~~~~~~iLl~Gp~GtGKT~la~~la~~l 77 (611)
+.++..+.|+||+|+||||+++.++..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455779999999999999999999977
No 486
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.46 E-value=0.033 Score=57.82 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=39.6
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhC---CcEEeecc-hhhcc-----cccc-chHHHHHHHHHHHHhcCCcEEEEcccc
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAE---ASFFSLSG-AELYS-----MYVG-ESEALLRNTFQRARLAAPSIIFFDEAD 393 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~---~~~~~~~~-~~~~~-----~~~g-~~~~~~~~~~~~a~~~~p~il~iDeid 393 (611)
..+++.||+|+||||+.++++..+. ..++...- .++.. ..+. .........++.+-...|+++++.|+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 3478999999999999999999874 23333221 11100 0001 111112233334444679999999853
No 487
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.45 E-value=0.0072 Score=55.45 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=26.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEc
Q 007255 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVIS 85 (611)
Q Consensus 53 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 85 (611)
...++|.||+|+|||+++..+++... .++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 46899999999999999999998876 544433
No 488
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.44 E-value=0.0071 Score=55.07 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=22.0
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhC
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAE 349 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~ 349 (611)
.-+.|.||+|+|||++++.++....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998764
No 489
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.43 E-value=0.007 Score=63.15 Aligned_cols=36 Identities=19% Similarity=0.419 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccccc
Q 007255 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV 89 (611)
Q Consensus 52 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~~ 89 (611)
.+.-|+|+|+||+||||+++.+++.++.. .++...+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~--~i~~D~~ 292 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYV--HVNRDTL 292 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCE--ECCGGGS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcE--EEccchH
Confidence 45679999999999999999999988755 4444443
No 490
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.42 E-value=0.0073 Score=56.80 Aligned_cols=30 Identities=27% Similarity=0.217 Sum_probs=25.5
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcEEee
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~~ 355 (611)
.-+.|.|++|+|||++++.++. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 3578999999999999999998 88776554
No 491
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.42 E-value=0.019 Score=63.52 Aligned_cols=48 Identities=27% Similarity=0.460 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHhhhhCchHHHhcCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 007255 24 NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISP 86 (611)
Q Consensus 24 ~~~~~~~l~~~l~~~~~~~~~~~~~g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 86 (611)
++.+++.+..++.. +.-.|++||||||||+++-.+...+ +..+..+..
T Consensus 191 N~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp CHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 56777777766532 2367999999999998766554443 445544443
No 492
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.39 E-value=0.0097 Score=56.79 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=26.9
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHhCCcEEe
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~~~~~~~ 354 (611)
+..+.|.|++|+|||++++.+|..+|.+++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3457899999999999999999999987754
No 493
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.39 E-value=0.0091 Score=55.75 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 007255 51 KWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (611)
Q Consensus 51 ~~~~~iLl~Gp~GtGKT~la~~la~~l~ 78 (611)
.++..+.|.||+|+||||+++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3557889999999999999999999875
No 494
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.38 E-value=0.0063 Score=56.52 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCCCCcceeCCCCCChHHHHHHHHHHh
Q 007255 322 SPVRGALLHGPPGCSKTTLAKAAAHAA 348 (611)
Q Consensus 322 ~~~~~~Ll~Gp~G~GKT~la~ala~~~ 348 (611)
.++.-+.|.||+|+|||++++.++...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 344567899999999999999999876
No 495
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.35 E-value=0.0056 Score=57.06 Aligned_cols=32 Identities=28% Similarity=0.163 Sum_probs=25.3
Q ss_pred CCCcceeCCCCCChHHHHHHHHHHh-CCcEEee
Q 007255 324 VRGALLHGPPGCSKTTLAKAAAHAA-EASFFSL 355 (611)
Q Consensus 324 ~~~~Ll~Gp~G~GKT~la~ala~~~-~~~~~~~ 355 (611)
+.-+.+.||+|+|||++++.++..+ +..++..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 3447799999999999999999877 5555443
No 496
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.35 E-value=0.0097 Score=54.43 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=23.3
Q ss_pred CCcceeCCCCCChHHHHHHHHHHhCCcE
Q 007255 325 RGALLHGPPGCSKTTLAKAAAHAAEASF 352 (611)
Q Consensus 325 ~~~Ll~Gp~G~GKT~la~ala~~~~~~~ 352 (611)
+.++|+||+|+|||+|++.+.......+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4589999999999999999988764433
No 497
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.32 E-value=0.021 Score=61.18 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCCCCCCcceeCCCCCChHHHHHHHHHHh----CCcEEeecchhhccccc------------------------------
Q 007255 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA----EASFFSLSGAELYSMYV------------------------------ 365 (611)
Q Consensus 320 ~~~~~~~~Ll~Gp~G~GKT~la~ala~~~----~~~~~~~~~~~~~~~~~------------------------------ 365 (611)
|+.+..-+++.|+||+|||+++..+|... +.++..++...-.....
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 317 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ 317 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHH
Q ss_pred -------------------cchHHHHHHHHHHHHhcCCcEEEEcccccccccCCCCCCCCcchhHHHHHHHHHHhcCCCC
Q 007255 366 -------------------GESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ 426 (611)
Q Consensus 366 -------------------g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 426 (611)
-..+..+..+-...+...+.+|+||-+..+. .........+.+..++..|..+..
T Consensus 318 ~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~------~~~~~~~~~~~~~~~~~~Lk~lak 391 (503)
T 1q57_A 318 WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVV------SASGESDERKMIDNLMTKLKGFAK 391 (503)
T ss_dssp HHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCC------SCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcC------CCCCCCCHHHHHHHHHHHHHHHHH
Q ss_pred CCCeEEEEec
Q 007255 427 AKGILVLAAT 436 (611)
Q Consensus 427 ~~~~~vI~~t 436 (611)
.-++.||+++
T Consensus 392 ~~~i~vi~~~ 401 (503)
T 1q57_A 392 STGVVLVVIC 401 (503)
T ss_dssp HHTCEEEEEE
T ss_pred HHCCeEEEEE
No 498
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.32 E-value=0.037 Score=58.27 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHhhcCCCCCCCcceeCCCCCChHHHHHHHHHHh---CCcEEeecchhh-------
Q 007255 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAEL------- 360 (611)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~Gp~G~GKT~la~ala~~~---~~~~~~~~~~~~------- 360 (611)
++...+.+++.+.+.+...+.....--.+.+..+.-+.|.||+|+||||+++.||..+ +..+.......+
T Consensus 260 ~~~~~~~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQ 339 (503)
T 2yhs_A 260 QLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ 339 (503)
T ss_dssp TCCBGGGHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHH
Q ss_pred -------------ccccccchHHHHHHHHHHHHhcCCcEEEEc
Q 007255 361 -------------YSMYVGESEALLRNTFQRARLAAPSIIFFD 390 (611)
Q Consensus 361 -------------~~~~~g~~~~~~~~~~~~a~~~~p~il~iD 390 (611)
...........+...+..+....-++++||
T Consensus 340 L~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~~~~DvVLID 382 (503)
T 2yhs_A 340 LQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIAD 382 (503)
T ss_dssp HHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHhcCceEEecccCcCHHHHHHHHHHHHHhcCCCEEEEe
No 499
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.31 E-value=0.048 Score=54.78 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=31.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 007255 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISP 86 (611)
Q Consensus 49 g~~~~~~iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 86 (611)
|+.+..-+++.|+||+|||+++..+|..+ +.++..++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 67777889999999999999999988764 566666654
No 500
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.31 E-value=0.012 Score=58.25 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=28.6
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 007255 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL 81 (611)
Q Consensus 48 ~g~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~ 81 (611)
+.+++...+.|+||+|+||||+++.++..+...+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 3566778899999999999999999999884333
Done!