BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007257
(611 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 137/520 (26%), Positives = 210/520 (40%), Gaps = 114/520 (21%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
TY EVY+ +++ LRA G G RV G N + +EA A + + L P
Sbjct: 49 TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSP 108
Query: 89 GAVNFILDHAEIDFVFVQDKKV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 145
+ +IL+HAE D V + D + E + + ++ Q VM A + +A +
Sbjct: 109 KEIAYILNHAE-DKVLLFDPNLLPLVEAIRGELKTVQHFVVM----DEKAPEGYLAYEEA 163
Query: 146 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI------ATF 199
LG+ + +P + C + YT+GT+G PKGVV +H + A+
Sbjct: 164 -----------LGEEADPVRVPER--AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASL 210
Query: 200 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD- 258
V G L + DV L +P+ H+ + A++ L R D
Sbjct: 211 VDGTAL---------SEKDVVLPVVPMFHV-----NAWCLPYAATLVGAKQVLPGPRLDP 256
Query: 259 --LMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 312
L+EL T AGVP V+ + + ++ L+ LRR
Sbjct: 257 ASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRR------------------- 297
Query: 313 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 372
LV+ G A + + F R+ + QGYGLTET
Sbjct: 298 -------------------------LVVGGSAAPRSLIARFERMGVE--VRQGYGLTETS 330
Query: 373 GPTTVCF----------PDEMCMVGTAG-PVSVYSELRLEEVPEMGYS-PLDDPPCGEVC 420
F +++ + G P+ + +RL E G P D GEV
Sbjct: 331 PVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPL---VRLRVADEEGRPVPKDGKALGEVQ 387
Query: 421 VRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 479
++G + GYY N + TR ++ DG+F TGDI G V+I DR K+LIK S GE+++
Sbjct: 388 LKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWIS 446
Query: 480 LEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEE 516
LEN P +++ V + +AVVVP E
Sbjct: 447 SVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGE 486
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 138/333 (41%), Gaps = 60/333 (18%)
Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 235
++YTSGT+G PKG V+ +AT + D D ++ T +DV + LPL H+ V+
Sbjct: 160 VVYTSGTTGPPKGAVIPRRALATTL---DALADAWQ--WTGEDVLVQGLPLFHVHGLVLG 214
Query: 236 EYF-FRRGASVGYY-----HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 289
RRG SV + G L D T+L GVP ++ +I E + E
Sbjct: 215 ILGPLRRGGSVRHLGRFSTEGAARELNDGA-----TMLFGVPTMYHRIAETLPADPE--- 266
Query: 290 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 349
LA LA RL++SG A L
Sbjct: 267 -----------------------------LAKALAG----------ARLLVSGSAALPVH 287
Query: 350 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 409
E + +++ YG+TET T+V D GT G ELRL E +
Sbjct: 288 DHERIAAATGRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTPIA 346
Query: 410 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 468
LD GE+ VRG LF+ Y PD T + DG+F TGD+ P+G V+I+ RK
Sbjct: 347 ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKAT 406
Query: 469 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGD 501
+ S G + +EN P + + V G+
Sbjct: 407 DLIKSGGYKIGAGEIENALLEHPEVREAAVTGE 439
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 146/334 (43%), Gaps = 72/334 (21%)
Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 234
IMYTSGT+G PKGVV THE++ + S +D ++ D++ L LP+ H+
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 228
Query: 235 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 293
+ RG + + D + ++E + + VP + +
Sbjct: 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 272
Query: 294 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 353
R+ A+L A R I+GGAP+ E
Sbjct: 273 --------------------RQVPEFAELDA---------PDFRYFITGGAPMP---EAL 300
Query: 354 LRVTCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEM 406
+++ + VQGY LTE+CG T+ D + G+AG ++++++ + + E
Sbjct: 301 IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH 360
Query: 407 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 466
G GEV ++ L Y+ P+ TR++ +GWF TGDIG+I G + I DR
Sbjct: 361 GE--------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRL 412
Query: 467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
K++I IS GE V +E+V P + ++ V G
Sbjct: 413 KDMI-ISGGENVYPAEIESVIIGVPGVSEVAVIG 445
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 127/500 (25%), Positives = 200/500 (40%), Gaps = 81/500 (16%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
TY E +E +++ A++ G R+ + N Q+ + + + P D
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGI 146
+ ++ ++ VFV K ++++L+ + Q++ +M T Q T
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 147 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 201
P ++E+ + P+ F+ I IM +SG++G PKGV L H +A F
Sbjct: 177 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSH 226
Query: 202 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 261
D F +++ D LS +P + F ++GY
Sbjct: 227 ARDPI---FGNQIAPDTAILSVVPF---------HHGFGMFTTLGY-------------- 260
Query: 262 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 321
L++G V L R + L+ L YK + A +
Sbjct: 261 ----LISGFRVV-----------------LMYRFEEELFLRSL----QDYKIQSALLVPT 295
Query: 322 LLAFRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 376
L +F + L + SGGAPLS EV E + + QGYGLTET
Sbjct: 296 LFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 355
Query: 377 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 436
+ P G G V + E ++ ++ + G + L GE+ VRG + SGY NP+
Sbjct: 356 IT-PKGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELSVRGPMIMSGYVNNPEA 412
Query: 437 TRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 495
T I DGW H+GDI + I+DR K+LIK +G VA LE++ P I D
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGCQVAPAELESILLQHPNIFD 471
Query: 496 IWVYG---DSLKSMLVAVVV 512
V G D + AVVV
Sbjct: 472 AGVAGLPDDDAGELPAAVVV 491
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 154/345 (44%), Gaps = 71/345 (20%)
Query: 169 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVS------GVDLFLDQFEDKMTVDDVYLS 222
P ++ + Y+SGT+G PKGV+LTH+ + T V+ +L+ DDV L
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS-------DDVILC 275
Query: 223 FLPLAHILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEG 280
LP+ HI I R GA++ ++N L + + K T+ VP + I +
Sbjct: 276 VLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS 335
Query: 281 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 340
+ KY L+ +R+V
Sbjct: 336 SETE----------------KYDLS-----------------------------SIRVVK 350
Query: 341 SGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT---TVCFPDEMCMV--GTAGPVSV 394
SG APL E+E+ + A L QGYG+TE GP ++ F E V G G V
Sbjct: 351 SGAAPLGKELEDAVNAKFPNAKLGQGYGMTE-AGPVLAMSLGFAKEPFPVKSGACGTVVR 409
Query: 395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 453
+E+++ + P+ G S + P GE+C+RG + GY NP T E+I DGW HTGDIG
Sbjct: 410 NAEMKIVD-PDTGDSLSRNQP-GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGL 467
Query: 454 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 498
I + + I+DR K LIK +G VA LE + P I D+ V
Sbjct: 468 IDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAV 511
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 141/334 (42%), Gaps = 63/334 (18%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 230
++ I+YTSGT+G KG L+H+ +A+ ++ VD + + T DDV + LP+ H
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 231 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 288
+ F RG+ + D + + D + + T+L GVP + +
Sbjct: 210 GLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTFYTR------------ 255
Query: 289 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 348
LL ++ G RL ISG APL
Sbjct: 256 ---------------------------------LLQSPRLTKETTGHXRLFISGSAPLLA 282
Query: 349 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
+ +++ YG TET T+ + D + G GP R+ + PE G
Sbjct: 283 DTHREWSAKTGHAVLERYGXTETNXNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGK 340
Query: 409 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK 466
P D G + V+G +F GY++ P+ T+ DG+F TGD+G+I G V I+ R
Sbjct: 341 ELPRGD--IGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRG 398
Query: 467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
K+L+ I+ G V + +E+ P + + V G
Sbjct: 399 KDLV-ITGGFNVYPKEIESEIDAXPGVVESAVIG 431
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 156/394 (39%), Gaps = 76/394 (19%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 230
+ IM +SG++G PKGV LTHE I T F D + ++++ L+ +P H
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 231 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 289
+ G V D L + K T + VP +F +++
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS--------- 300
Query: 290 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 349
+ L KY L+ L + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 350 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
V E R + QGYGLTET + P+ G +G V + ++ ++
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 409 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 467
L GEVCV+G L GY NP+ T+E I +GW HTGDIG I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSN 525
+LIK +G V LE+V P I D V G D + L VV E
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN------ 494
Query: 526 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRG 559
+ ++ +Y+ S++ NA +LRG
Sbjct: 495 ---------MTEKEVMDYVASQVSNA---KRLRG 516
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 156/394 (39%), Gaps = 76/394 (19%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 230
+ IM +SG++G PKGV LTHE I T F D + ++++ L+ +P H
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 231 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 289
+ G V D L + K T + VP +F +++
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS--------- 300
Query: 290 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 349
+ L KY L+ L + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 350 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
V E R + QGYGLTET + P+ G +G V + ++ ++
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 409 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 467
L GEVCV+G L GY NP+ T+E I +GW HTGDIG I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSN 525
+LIK +G V LE+V P I D V G D + L VV E
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN------ 494
Query: 526 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRG 559
+ ++ +Y+ S++ NA +LRG
Sbjct: 495 ---------MTEKEVMDYVASQVSNA---KRLRG 516
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 156/394 (39%), Gaps = 76/394 (19%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 230
+ IM +SG++G PKGV LTHE I T F D + ++++ L+ +P H
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 231 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 289
+ G V D L + K T + VP +F +++
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKS--------- 300
Query: 290 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 349
+ L KY L+ L + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 350 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
V E R + QGYGLTET + P+ G +G V + ++ ++
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 409 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 467
L GEVCV+G L GY NP+ T+E I +GW HTGDIG I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSN 525
+LIK +G V LE+V P I D V G D + L VV E
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN------ 494
Query: 526 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRG 559
+ ++ +Y+ S++ NA +LRG
Sbjct: 495 ---------MTEKEVMDYVASQVSNA---KRLRG 516
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 94/178 (52%), Gaps = 23/178 (12%)
Query: 336 LRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMV-------- 386
LR++ SGGAPL E+E+ +R A L QGYG+TE GP MC+
Sbjct: 299 LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE-AGPVLA-----MCLAFAKEPFDI 352
Query: 387 --GTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I 442
G G V +E+++ + PE G S P + P GE+C+RG + GY +P+ T +I
Sbjct: 353 KPGACGTVVRNAEMKIVD-PETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDK 409
Query: 443 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
+GW HTGDIG I + + I+DR K LIK +G VA LE + P I D V G
Sbjct: 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVG 466
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/445 (23%), Positives = 169/445 (37%), Gaps = 88/445 (19%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
TY ++ + L A G G RV + N ++ L + VP+ L
Sbjct: 31 TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAA 90
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
V+FIL + KV +P +R V I
Sbjct: 91 PEVSFILSDS--------GSKVVIYGAPSAPVIDAIRAQA--------DPPGTVTDWIGA 134
Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
S E L +E + N+ IMYTSGT+G PKGVV THE++ + S +D
Sbjct: 135 DSLAERLRSAAADEPAVECGGDDNLF-IMYTSGTTGHPKGVVHTHESVHSAASSWASTID 193
Query: 209 -QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTL 266
++ D++ L LP+ H+ + RG + + D + ++E + +
Sbjct: 194 VRYRDRL------LLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCI 247
Query: 267 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 326
VP + + R+ A+L A
Sbjct: 248 GGAVPAILNFM------------------------------------RQVPEFAELDA-- 269
Query: 327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFL--VQGYGLTETCGPTTVCFP-DEM 383
R I+GGAP+ E +++ + VQGY LTE+CG T+ D +
Sbjct: 270 -------PDFRYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDAL 319
Query: 384 CMVGTAGPVSVYSELRLEE----VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 439
G+AG ++++++ + + E G GEV ++ L Y+ P+ TR+
Sbjct: 320 RKAGSAGRATMFTDVAVRGDDGVIREHGE--------GEVVIKSDILLKEYWNRPEATRD 371
Query: 440 SIIDGWFHTGDIGQILPNGVVKIID 464
+ +GWF TGDIG+I G + I D
Sbjct: 372 AFDNGWFRTGDIGEIDDEGYLYIKD 396
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 335 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 393
L + SGGAPLS EV E + + QGYGLTET + P+ G G V
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 366
Query: 394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 452
+ E ++ ++ + G + L GE+CVRG + SGY NP+ T I DGW H+GDI
Sbjct: 367 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 424
Query: 453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 509
+ I+DR K+LIK +G VA LE++ P I D V G D + A
Sbjct: 425 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 483
Query: 510 VVV 512
VVV
Sbjct: 484 VVV 486
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 20/207 (9%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
TY E +E +++ A++ G R+ + N Q+ + + + P D
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLTAEQKEMAVQTGI 146
+ ++ ++ VFV K ++++L+ + Q++ +M T Q T
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 147 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 201
P ++E+ + P+ F+ I IM +SG++G PKGV L H T F
Sbjct: 172 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH 221
Query: 202 GVDLFLDQFEDKMTVDDVYLSFLPLAH 228
D F +++ D LS +P H
Sbjct: 222 ARDPI---FGNQIIPDTAILSVVPFHH 245
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 335 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 393
L + SGGAPLS EV E + + QGYGLTET + P+ G G V
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 366
Query: 394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 452
+ E ++ ++ + G + L GE+CVRG + SGY NP+ T I DGW H+GDI
Sbjct: 367 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 424
Query: 453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 509
+ I+DR K+LIK +G VA LE++ P I D V G D + A
Sbjct: 425 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 483
Query: 510 VVV 512
VVV
Sbjct: 484 VVV 486
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 20/207 (9%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
TY E +E +++ A++ G R+ + N Q+ + + + P D
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLTAEQKEMAVQTGI 146
+ ++ ++ VFV K ++++L+ + Q++ +M T Q T
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 147 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 201
P ++E+ + P+ F+ I IM +SG++G PKGV L H T F
Sbjct: 172 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH 221
Query: 202 GVDLFLDQFEDKMTVDDVYLSFLPLAH 228
D F +++ D LS +P H
Sbjct: 222 ARDPI---FGNQIIPDTAILSVVPFHH 245
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 335 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 393
L + SGGAPLS EV E + + QGYGLTET + P+ G G V
Sbjct: 313 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 371
Query: 394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 452
+ E ++ ++ + G + L GE+CVRG + SGY NP+ T I DGW H+GDI
Sbjct: 372 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 429
Query: 453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 509
+ I+DR K+LIK +G VA LE++ P I D V G D + A
Sbjct: 430 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 488
Query: 510 VVV 512
VVV
Sbjct: 489 VVV 491
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 20/207 (9%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
TY E +E +++ A++ G R+ + N Q+ + + + P D
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 116
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGI 146
+ ++ ++ VFV K ++++L+ + Q++ +M T Q T
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 147 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 201
P ++E+ + P+ F+ I IM +SG++G PKGV L H T F
Sbjct: 177 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH 226
Query: 202 GVDLFLDQFEDKMTVDDVYLSFLPLAH 228
D F +++ D LS +P H
Sbjct: 227 ARDPI---FGNQIIPDTAILSVVPFHH 250
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/478 (24%), Positives = 176/478 (36%), Gaps = 84/478 (17%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
T+++ ++ S L G G RV I NC + +E + A + I +P
Sbjct: 33 THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLP------- 85
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
VN+ L+ EI FV + D R V SL +K A+ G P
Sbjct: 86 --VNYRLNADEIAFVLGDGAPSVVVAGTDYRDI----VAGVLPSLGGVKKAYAIGDGSGP 139
Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
++ F L + I++T+ G P+G +++ + S + +D
Sbjct: 140 FA--PFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSL---VD 194
Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRG-ASVGYYHGDLNALRDDLMELKPTLL 267
+ ++T DV L LPL H+ + + G ASV D D+ K T++
Sbjct: 195 AW--RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVM 252
Query: 268 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK 327
A E P+ I D +A+P A L + R
Sbjct: 253 A------------------EFAPMLGNILD-----------------QAAP-AQLASLRA 276
Query: 328 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMV 386
V G +E F A +G +ET G +T + D
Sbjct: 277 VT-------------GLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR---- 319
Query: 387 GTAGPVSVYSEL--RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 444
P S L R V + PL GE+ +RG T+F GY+ N T+ + +G
Sbjct: 320 ----PKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNG 375
Query: 445 WFHTGDIGQILPNGVVKIIDR--KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
W HTGD+G+ +G + R +K LIK + GE V +E P I D V G
Sbjct: 376 WHHTGDMGRFDADGYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIG 432
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 88/186 (47%), Gaps = 7/186 (3%)
Query: 335 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 393
L + SGGAPL+ EV E + + QGYGLTET + G G V
Sbjct: 342 NLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVV 401
Query: 394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 452
+ ++ ++ + G + L GE+CV+G + GY NP+ T I DGW H+GDI
Sbjct: 402 PFFSAKIVDL-DTGKT-LGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIA 459
Query: 453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAV 510
+G I+DR K+LIK +G V LE++ P I D V G D L A
Sbjct: 460 YYDKDGYFFIVDRLKSLIKY-KGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAA 518
Query: 511 VVPCEE 516
VV EE
Sbjct: 519 VVVLEE 524
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 16/205 (7%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNAL--SLICVPLYDTL 86
TY E +E ++ ++ G + + N Q+ M C AL + P D
Sbjct: 86 TYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFF--MPVCGALFIGVGVAPTNDIY 143
Query: 87 GPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 146
+ L ++ VF + ++++L ++L ++ L + + M Q+
Sbjct: 144 NERELYNSLSISQPTIVFCSKRALQKILG----VQKKLPIIQKIVILDSREDYMGKQS-- 197
Query: 147 KPYSWDEFLHLGKVNEMEILPP---QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV 203
YS+ E NE + +P + IM +SG++G PKGV LTH+ I S
Sbjct: 198 -MYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHC 256
Query: 204 DLFLDQFEDKMTVDDVYLSFLPLAH 228
+ F +++ D L+ +P H
Sbjct: 257 RDPV--FGNQIIPDTAILTVIPFHH 279
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 120/510 (23%), Positives = 187/510 (36%), Gaps = 100/510 (19%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
+Y+E+ EE +I L+ GA G V +Y + V + +P+ L
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPE 550
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
++++L D LL+ Q + T+L + + + P
Sbjct: 551 DRISYML----------ADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDP 600
Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
+ I P P IMYTSGT+G PKG + TH I V VD
Sbjct: 601 AT-------------AIDPNDP---AYIMYTSGTTGKPKGNITTHANIQGLVKHVDYM-- 642
Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 268
F D+ D +LS + Y F + +Y LNA R + + + TLL
Sbjct: 643 AFSDQ----DTFLS-----------VSNYAFD-AFTFDFYASMLNAARLIIAD-EHTLLD 685
Query: 269 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 328
E++ + I + + +F+ L WM
Sbjct: 686 T-----ERLTDLILQENVNVMFATTALFNLLTDAGEDWMK-------------------- 720
Query: 329 KARLGGRLRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEM 383
LR ++ GG S V + LR+ L+ YG TE T PD +
Sbjct: 721 ------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSI 774
Query: 384 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID 443
+ P+S S L E ++ P GE+C+ G + GY DLT+E I+
Sbjct: 775 SSLPIGKPISNASVYILNEQSQL--QPFG--AVGELCISGMGVSKGYVNRADLTKEKFIE 830
Query: 444 GWF-------HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 496
F TGD+ + LP+G ++ R + +KI +G + LE +E P ++D
Sbjct: 831 NPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDA 889
Query: 497 WVYGD-------SLKSMLVAVVVPCEEDTK 519
V D S+ + LV ED K
Sbjct: 890 VVVADRHESGDASINAYLVNRTQLSAEDVK 919
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 230
++ I+YTSGT+G G +L+H+ +A+ ++ VD + + T DDV + LP+ H
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 231 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 288
+ F RG+ + D + + D + + T+L GVP + +
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 289 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 348
LL ++ G +RL ISG APL
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 349 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
+ +++ YG+TET T+ + D + G GP R+ + PE G
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 409 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 466
P D G + V G +F GY++ P+ T E DG+F TGD+G I G V I+ R
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 467 KNLI 470
+L+
Sbjct: 399 XDLV 402
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 230
++ I+YTSGT+G G +L+H+ +A+ ++ VD + + T DDV + LP+ H
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 231 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 288
+ F RG+ + D + + D + + T+L GVP + +
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 289 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 348
LL ++ G +RL ISG APL
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 349 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
+ +++ YG+TET T+ + D + G GP R+ + PE G
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 409 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 466
P D G + V G +F GY++ P+ T E DG+F TGD+G I G V I+ R
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 467 KNLI 470
+L+
Sbjct: 399 XDLV 402
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 230
++ I+YTSGT+G G +L+H+ +A+ ++ VD + + T DDV + LP+ H
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 231 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 288
+ F RG+ + D + + D + + T+L GVP + +
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 289 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 348
LL ++ G +RL ISG APL
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 349 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
+ +++ YG+TET T+ + D + G GP R+ + PE G
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 409 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 466
P D G + V G +F GY++ P+ T E DG+F TGD+G I G V I+ R
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 467 KNLI 470
+L+
Sbjct: 399 XDLV 402
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 109/475 (22%), Positives = 172/475 (36%), Gaps = 74/475 (15%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
T+ E+ V + + L A G P RV + N V A+ A + L + L L
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 89 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
+ ++ E+ V ++V + + A+ + F E
Sbjct: 91 AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 148 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 207
PYS+ + + + P QP I YTSGT+G PK ++ + V LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 208 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 266
Q + +V L +PL H+ VG++ + AL D
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 267 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 326
G +EE RP+ DAL + + + A
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 386
+ LR V GA + V E + V GYG TE + P
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQPK----T 320
Query: 387 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 445
GT +SE+R+ + + + GE+ V + F GY P T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
+ T D+ P G V+I+ R ++I IS GE + +E V AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 108/475 (22%), Positives = 171/475 (36%), Gaps = 74/475 (15%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
T+ E+ V + + L A G P RV + N V A+ A + L + L L
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 89 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
+ ++ E+ V ++V + + A+ + F E
Sbjct: 91 AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 148 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 207
PYS+ + + + P QP I YTSGT+G PK ++ + V LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 208 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 266
Q + +V L +PL H+ VG++ + AL D
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 267 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 326
G +EE RP+ DAL + + + A
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 386
+ LR V GA + V E + V YG TE + P
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNAYGTTEAMNSLYMRQPK----T 320
Query: 387 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 445
GT +SE+R+ + + + GE+ V + F GY P T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
+ T D+ P G V+I+ R ++I IS GE + +E V AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 108/475 (22%), Positives = 172/475 (36%), Gaps = 74/475 (15%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
T+ E+ V + + L A G P RV + N V A+ A + L + L L
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 89 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
+ ++ E+ V ++V + + A+ + F E
Sbjct: 91 AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 148 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 207
PYS+ + + + P QP I YTSGT+G PK ++ + V LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 208 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 266
Q + +V L +PL H+ VG++ + AL D
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 267 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 326
G +EE RP+ DAL + + + A
Sbjct: 223 -------------GTYVVIEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 386
+ LR V GA + V E + V YG TE + P
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 387 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 445
GT +SE+R+ + + + GE+ V + F GY P+ T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEATAEKLQDGW 380
Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
+ T D+ P G V+I+ R ++I IS GE + +E V AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 108/475 (22%), Positives = 171/475 (36%), Gaps = 74/475 (15%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
T+ E+ V + + L A G P RV + N V A+ A + L + L L
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 89 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
+ ++ E+ V ++V + + A+ + F E
Sbjct: 91 AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 148 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 207
PYS+ + + + P QP I YTSGT+G PK ++ + V LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 208 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 266
Q + +V L +PL H+ VG++ + AL D
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 267 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 326
G +EE RP+ DAL + + + A
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 386
+ LR V GA + V E + V YG TE + P
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 387 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 445
GT +SE+R+ + + + GE+ V + F GY P T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
+ T D+ P G V+I+ R ++I IS GE + +E V AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 108/475 (22%), Positives = 171/475 (36%), Gaps = 74/475 (15%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
T+ E+ V + + L A G P RV + N V A+ A + L + L L
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 89 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
+ ++ E+ V ++V + + A+ + F E
Sbjct: 91 AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 148 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 207
PYS+ + + + P QP I YTSGT+G PK ++ + V LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 208 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 266
Q + +V L +PL H+ VG++ + AL D
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 267 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 326
G +EE RP+ DAL + + + A
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 386
+ LR V GA + V E + V YG TE + P
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 387 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 445
GT +SE+R+ + + + GE+ V + F GY P T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
+ T D+ P G V+I+ R ++I IS GE + +E V AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVPDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 335 RLRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPV 392
L+ ++ GGA LS T +E L+ + +G+TETC P+ + T G
Sbjct: 275 NLQKILLGGAKLSATMIETALQYNLPIY--NSFGMTETCSQFLTATPEMLHARPDTVGMP 332
Query: 393 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 452
S +++++ + G+ GE+ ++G + +GY DLT + +G+F+TGDI
Sbjct: 333 SANVDVKIKNPNKEGH--------GELMIKGANVMNGYLYPTDLTG-TFENGYFNTGDIA 383
Query: 453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 495
+I G V I DR+K+LI IS GE + +E V P I D
Sbjct: 384 EIDHEGYVMIYDRRKDLI-ISGGENIYPYQIETVAKQFPGISD 425
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 110/477 (23%), Positives = 172/477 (36%), Gaps = 78/477 (16%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
T+ E+ V + + L A G P RV + N V A+ A + L + P
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAV---------P 81
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA---VQTG 145
+N L AE+ + + + +++ + A + F S + + V+ G
Sbjct: 82 ALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAI-----FQSGSGARIIFLGDLVRDG 136
Query: 146 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 205
+PYS+ + + + P QP I YTSGT+G PK ++ + V L
Sbjct: 137 -EPYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----L 183
Query: 206 FLD-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 264
F Q + +V L PL H+ VG++ + AL D
Sbjct: 184 FXSTQVGLRHGRHNVVLGLXPLYHV---------------VGFFAVLVAALALD------ 222
Query: 265 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 324
G +EE RP+ DAL + + + A
Sbjct: 223 ---------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAA 262
Query: 325 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 384
+ LR V GA V E + V YG TE P
Sbjct: 263 AHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNIYGTTEAXNSLYXRQPK--- 319
Query: 385 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIID 443
GT +SE+R+ + + + GE+ V + F GY P T E + D
Sbjct: 320 -TGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD 378
Query: 444 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
GW+ T D+ P G V+I+ R + I IS GE + +E V AP + ++ V G
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDXI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 394
L+++ GGA S E ++ L Q +G+ E T E +V T G P+S
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSP 359
Query: 395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 453
Y E R+ + + P + G + RG GYYK + S DG++ TGDI +
Sbjct: 360 YDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
Query: 454 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 495
+ +G + + R K+ I GE VA E +EN P + D
Sbjct: 417 LTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHD 457
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 394
L+++ GGA S E ++ L Q +G E T E +V T G P S
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGXAEGLVNYTRLDDPEEIIVNTQGKPXSP 359
Query: 395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 453
Y E R+ + + P + G + RG GYYK + S DG++ TGDI +
Sbjct: 360 YDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
Query: 454 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 495
+ +G + + R K+ I GE VA E +EN P + D
Sbjct: 417 LTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHD 457
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 336 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVS 393
L+ + G PL+ EV FL T L++G+G TET T FP G+ G P
Sbjct: 343 LKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETV-VTIATFPWMEPKPGSIGKPTP 400
Query: 394 VYS------ELRLEEVPEMG---YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 444
Y + RL EV E G + ++ P G LF Y K+P+ T E+ DG
Sbjct: 401 GYKIELMDRDGRLCEVGEEGEIVINTMEGKPVG--------LFVHYGKDPERTEETWHDG 452
Query: 445 WFHTGDIGQILPNGVVKIIDRKKNLIKIS 473
++HTGD+ + +G + + R ++IK S
Sbjct: 453 YYHTGDMAWMDEDGYLWFVGRADDIIKTS 481
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 94/473 (19%), Positives = 180/473 (38%), Gaps = 80/473 (16%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
TY+++ + I + L+A GA+PG RV + A ++A C I VP+Y P
Sbjct: 42 TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY----P 97
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
A +LD A + + + + L + TA++ + P
Sbjct: 98 PAQEKLLDKA-------------QRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIP 144
Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
E + L + + + + +I + YTSG++ PKGV ++H + + ++
Sbjct: 145 AIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNL---LDNLNKIFT 201
Query: 209 QFEDKMTVDDVYLSFLPLAH-------ILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 261
F + + S+LP H IL + + + L+ L+ + +
Sbjct: 202 SFH--XNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLK-HITK 258
Query: 262 LKPTLLAG--------VPRVFEKIHEGIK-----KALEELRPLRRRIFDALYKYKLAWMN 308
K T+ V R+ E+ EG+ A P+R + Y+ A+
Sbjct: 259 YKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQ---AFKE 315
Query: 309 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 368
G+++ P L L+++GG P S+ + +T Q + +
Sbjct: 316 FGFRKEAFYPCYGL-----------AEATLLVTGGTPGSS----YKTLTLAKEQFQDHRV 360
Query: 369 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 428
+ P +V + P+ E+++ + + P D GE+ V+ ++
Sbjct: 361 HFADDNS----PGSYKLVSSGNPI---QEVKIIDPDTL--IPCDFDQVGEIWVQSNSVAK 411
Query: 429 GYYKNPDLTRESIIDG---------WFHTGDIGQILPNGVVKIIDRKKNLIKI 472
GY+ P+ TR + + TGD+G + N + + R K+LI I
Sbjct: 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELY-VTGRIKDLIII 463
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 23/182 (12%)
Query: 336 LRLVISGGAP----LSTEVEEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAG 390
L+L+ GGA L+ +V E L L Q +G+ E T + DE
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCK----LQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364
Query: 391 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 449
P+S E++ + + Y + + G + RG F GYY++P+ + D ++++G
Sbjct: 365 PISSDDEIK---IVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG 421
Query: 450 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVA 509
D+ Q P+G ++++ R K+ I GE +A E +E + + P + + + LVA
Sbjct: 422 DLVQRTPDGNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHP---------EVMHAALVA 471
Query: 510 VV 511
+V
Sbjct: 472 IV 473
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 394
L+L+ GGA LS + + L Q +G+ E T ++ T G P+
Sbjct: 304 LKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCP 363
Query: 395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 453
E+ V + +PL G + RG F GYYK+P + +G++ +GD+
Sbjct: 364 DDEVW---VADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLIS 420
Query: 454 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 493
I P G + + R+K+ I GE +A E +EN+ P +
Sbjct: 421 IDPEGYITVQGREKDQIN-RGGEKIAAEEIENLLLRHPAV 459
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 27/140 (19%)
Query: 363 VQGYGLTET--CGPTTVCFPDEMCM-VGTAGPVS------VYSELRLEEVPEMGYSPLDD 413
+ YG TET C T V + + V P+ V L+L+ V E
Sbjct: 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE-------- 371
Query: 414 PPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNGVVKIIDRK 466
GE+C+ G+ L GY+K P+LT + +D F TGD + L +G ++ + R
Sbjct: 372 --AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 429
Query: 467 KNLIKISQGEYVALEYLENV 486
N +KI +G V LE +E++
Sbjct: 430 DNQVKI-RGHRVELEEVESI 448
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 7/53 (13%)
Query: 166 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 218
+P + ++ ++YTSGT+G+PKG +L H+ I S + +F FE+ + V +
Sbjct: 177 VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGI----SNLKVF---FENSLNVTE 222
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 119/311 (38%), Gaps = 57/311 (18%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 231
+I +Y+SG++G PKG V TH A +L+ + +DV S L
Sbjct: 184 DIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAKPILG-IAENDVVFSAAKL----- 234
Query: 232 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 291
FF G G LM +PT + I L E RP
Sbjct: 235 ------FFAYGLGNGLTFPLSVGATAILMAERPTA------------DAIFARLVEHRPT 276
Query: 292 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 351
LY A++L + AR +R+ S G L E+
Sbjct: 277 VFYGVPTLY-------------------ANMLVSPNLPARADVAIRICTSAGEALPREIG 317
Query: 352 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--GTAG-PVSVYSELRLEEVPEMGY 408
E ++ G G TE + + V GT G PV Y E+ L + E G+
Sbjct: 318 ERFTAHFGCEILDGIGSTEML---HIFLSNRAGAVEYGTTGRPVPGY-EIELRD--EAGH 371
Query: 409 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 468
+ + D G++ ++G + Y+ N + +R + + W +GD LPNG R +
Sbjct: 372 A-VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDD 430
Query: 469 LIKISQGEYVA 479
++K+S G+YV+
Sbjct: 431 MLKVS-GQYVS 440
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 336 LRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 394
+R I+GG P S V + R L GYG E+ G TT + GTA P+ V
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387
Query: 395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---------DGW 445
+ V + P + GE+ V G L GY P LT E + +
Sbjct: 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERM 447
Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKI 472
+ TGD+ + +GV++ + R + +KI
Sbjct: 448 YRTGDLARRRADGVLEYVGRADDQVKI 474
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 170 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 227
P ++ +M+TSG++G PKGV+ H + +L Q D+V+L P++
Sbjct: 213 PEDVACVMFTSGSTGRPKGVMSPHRAL------TGTYLGQDYAGFGPDEVFLQCSPVS 264
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 364 QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR---LEEVPEMGYSPLDDPPCGEVC 420
Q +G TE C T P + T G EL+ LE+ E+G GE+
Sbjct: 333 QIWGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGE-----SGEIV 387
Query: 421 VRGKTLFSGYYKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 475
+RG +F GY+K +E +F TGD+G I G + DR K +IK +G
Sbjct: 388 IRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KG 446
Query: 476 EYVALEYLENVYCVAPIIEDIWVYG 500
+A LE + + D+ V G
Sbjct: 447 YTIAPFELEALLXKHEAVXDVAVIG 471
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 402 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 461
E+ P+ + G +C+ G +L SGY+ + E GW TGD+G +L +G +
Sbjct: 396 EIRNEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL-DGYLY 454
Query: 462 IIDRKKNLIKI 472
+ R K+LI I
Sbjct: 455 VTGRIKDLIII 465
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 27/180 (15%)
Query: 52 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 111
G RV + ++VEA AC L+ VPL G G + K++
Sbjct: 73 GDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRD------------SWSAKLQ 120
Query: 112 ELLSPDCRSAQRL---RVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP 168
LL+ C+ A + + + T + E+ V + ++W + L V + P
Sbjct: 121 GLLA-SCQPAAIITGDEWLPLVNAATHDNPELHVLS----HAWFKALPEADV---ALQRP 172
Query: 169 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 228
P +I + YTSG++ P+GV++TH + + + K+ D +S+LP H
Sbjct: 173 VPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAI----SHDGIKLRPGDRCVSWLPFYH 228
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 10/141 (7%)
Query: 336 LRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 394
+R I+GG P S V + R L GYG E+ G TT + GTA P+ V
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387
Query: 395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---------DGW 445
+ V + P + GE+ V G L GY P LT E + +
Sbjct: 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERM 447
Query: 446 FHTGDIGQILPNGVVKIIDRK 466
+ TGD+ + +GV++ + R
Sbjct: 448 YRTGDLARRRADGVLEYVGRA 468
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 170 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 227
P ++ +M+TSG++G PKGV+ H + +L Q D+V+L P++
Sbjct: 213 PEDVACVMFTSGSTGRPKGVMSPHRAL------TGTYLGQDYAGFGPDEVFLQCSPVS 264
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
+Y+E++ +V + + L G + G V IY P+ AM AC + + ++ P
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
AV + + V D+ V+ S + + + + ++T+ + + ++
Sbjct: 169 EAVAGCIIDSSSRLVITADEGVRAGRSIPLK--KNVDDALKNPNVTSVEHVIVLKRTGSD 226
Query: 149 YSWDEFLHLGKVNEMEILPP--QPFNICT-----IMYTSGTSGDPKGVVLT 192
W E L + +E P QP + I+YTSG++G PKGV+ T
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
+Y+E++ +V + + L G + G V IY P+ AM AC + + ++ P
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
AV + + V D+ V+ S + + + + ++T+ + + ++
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGASIPLK--KNVDDALKNPNVTSVEHVIVLKRTGSD 226
Query: 149 YSWDEFLHLGKVNEMEILPP--QPFNICT-----IMYTSGTSGDPKGVVLT 192
W E L + +E P QP + I+YTSG++G PKGV+ T
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
+Y+E++ +V + + L G + G V IY P+ AM AC + + ++ P
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
AV + + V D+ V+ S + + + + ++T+ + + ++
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLK--KNVDDALKNPNVTSVEHVIVLKRTGSD 226
Query: 149 YSWDEFLHLGKVNEMEILPP--QPFNICT-----IMYTSGTSGDPKGVVLT 192
W E L + +E P QP + I+YTSG++G PKGV+ T
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
+Y+E++ +V + + L G + G V IY P+ AM AC + + ++ P
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
AV + + V D+ V+ S + + + + ++T+ + + ++
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLK--KNVDDALKNPNVTSVEHVIVLKRTGSD 226
Query: 149 YSWDEFLHLGKVNEMEILPP--QPFNICT-----IMYTSGTSGDPKGVVLT 192
W E L + +E P QP + I+YTSG++G PKGV+ T
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
+Y+E++ +V + + L G + G V IY P+ AM AC + + ++ P
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
AV + + V D+ V+ S + + + + ++T+ + + ++
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLK--KNVDDALKNPNVTSVEHVIVLKRTGSD 226
Query: 149 YSWDEFLHLGKVNEMEILPP--QPFNICT-----IMYTSGTSGDPKGVVLT 192
W E L + +E P QP + I+YTSG++G PKGV+ T
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
+Y+E++ +V + + L G + G V IY P+ AM AC + + ++ P
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
AV + + V D+ V+ S + + + + ++T+ + + ++
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLK--KNVDDALKNPNVTSVEHVIVLKRTGSD 226
Query: 149 YSWDEFLHLGKVNEMEILPP--QPFNICT-----IMYTSGTSGDPKGVVLT 192
W E L + +E P QP + I+YTSG++G PKGV+ T
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
+Y+E++ +V + + L G + G V IY P+ AM AC + + ++ P
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
AV + + V D+ V+ S + + + + ++T+ + + ++
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLK--KNVDDALKNPNVTSVEHVIVLKRTGSD 226
Query: 149 YSWDEFLHLGKVNEMEILPP--QPFNICT-----IMYTSGTSGDPKGVVLT 192
W E L + +E P QP + I+YTSG++G PKGV+ T
Sbjct: 227 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 152/368 (41%), Gaps = 85/368 (23%)
Query: 176 IMYTSGTSGDPKGVVLTHETIATF---------VSGVDLFLDQ--FEDKMTVDDVYLSFL 224
I+YTSG++G+PKGV ++ + +F VSG +FL+Q F ++V D+Y
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPC-- 205
Query: 225 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 284
+ G G L+ + D + KP +L
Sbjct: 206 --------------LQSG-------GTLHCVTKDAVN-KPKVL----------------- 226
Query: 285 LEELRPLRRRIFDALYKY-KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 343
EEL+ ++ + + ++ M+ G+ Q + P AD F G L + ++
Sbjct: 227 FEELKKSGLNVWTSTPSFVQMCLMDPGFSQ-DLLPHADTFMF------CGEVLPVSVAKA 279
Query: 344 APLSTEVEEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAGPVSVYS-ELRLE 401
+E F + A + YG TE T T+V +++ + PV ++ +
Sbjct: 280 L-----LERFPK----AKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIF 330
Query: 402 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG---W-FHTGDIGQILPN 457
+ E G PL + GE+ + G ++ GY P+LT ++ W + TGD G + +
Sbjct: 331 IMDEEG-QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAG-FIQD 388
Query: 458 GVVKIIDRKKNLIKISQGEYVALEYLE-----NVYCVAPIIEDIWVYGDSLKSMLVAVVV 512
G + R IK+ G + LE +E + Y + ++ I + L+A +V
Sbjct: 389 GQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVV--IPYQPNGTVEYLIAAIV 445
Query: 513 PCEEDTKK 520
P E + +K
Sbjct: 446 PEEHEFEK 453
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 127/348 (36%), Gaps = 92/348 (26%)
Query: 168 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 227
P ++ ++YTSGT+G+PKGV + H + ++G D + DD +L F L+
Sbjct: 172 PGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFD-----FSGDDRWLLFHSLS 226
Query: 228 HILDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 285
D + E + F GA + + P A P
Sbjct: 227 --FDFSVWEIWGAFSTGAE---------------LVVLPHWAARTPE------------- 256
Query: 286 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR----LRLVIS 341
+Y ++ G +P A LA + R GGR LR VI
Sbjct: 257 ---------------QYLAVIIDRGVTVINQTPTA-FLALTEAAVR-GGRDVSGLRYVIF 299
Query: 342 GGAPLSTEVEEFLRVTCCAF------LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 395
GG L+ + LR AF LV GYG+TET TT E + A +
Sbjct: 300 GGEKLTAPM---LRPWAKAFGLDRPRLVNGYGITETTVFTTFEEITEAYLAQDASIIG-- 354
Query: 396 SELRLEEVPEMGYSPLDDP-------PCGEVCVRGKTLFSGYYKNPDLTRESIID----- 443
+P G + D GE+ + G L GY + P+LT E +
Sbjct: 355 -----RALPSFGTRVVGDDGRDVAPGETGELWLSGAQLAEGYLRRPELTAEKFPEVTDEK 409
Query: 444 -----GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 486
++ TGD+ LP+G R IK+ +G + L +E
Sbjct: 410 TGESVRYYRTGDLVSELPDGRFAYEGRADLQIKL-RGYRIELSDIETA 456
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 11/60 (18%)
Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGV---------DLFLDQ--FEDKMTVDDVYLSFL 224
I+YTSG++G+PKGV +T+ + +F +FL+Q F ++V D+Y S +
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLV 208
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 16/180 (8%)
Query: 350 VEEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAGPVS-VYSELRLEEVPEMG 407
+E F + T ++ YG TE T T + +E+ + PV S+ RL + E G
Sbjct: 282 IERFPKAT----IMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDG 337
Query: 408 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE--SIIDG--WFHTGDIGQILPNGVVKII 463
+ D GE+ + G ++ GY +P+LT + ++IDG + TGD G + NG++
Sbjct: 338 -TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYN 395
Query: 464 DRKKNLIKISQGEYVALEYLENVYCVAPIIED---IWVYGDSLKSMLVAVVVPCEEDTKK 520
R IK+ G + LE +E+ +E + + L+AVVVP E +K
Sbjct: 396 GRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEK 454
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 11/60 (18%)
Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGV---------DLFLDQ--FEDKMTVDDVYLSFL 224
I+YTSG++G+PKGV +T+ + +F +FL+Q F ++V D+Y S +
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLV 208
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 16/180 (8%)
Query: 350 VEEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAGPVS-VYSELRLEEVPEMG 407
+E F + T ++ YG TE T T + +E+ + PV S+ RL + E G
Sbjct: 282 IERFPKAT----IMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDG 337
Query: 408 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE--SIIDG--WFHTGDIGQILPNGVVKII 463
+ D GE+ + G ++ GY +P+LT + ++IDG + TGD G + NG++
Sbjct: 338 -TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYN 395
Query: 464 DRKKNLIKISQGEYVALEYLENVYCVAPIIED---IWVYGDSLKSMLVAVVVPCEEDTKK 520
R IK+ G + LE +E+ +E + + L+AVVVP E +K
Sbjct: 396 GRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEK 454
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 417 GEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNGVV 460
GE+ V G + GY NP+ T E+ +HTGDIG + + ++
Sbjct: 349 GEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNIL 396
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 176 IMYTSGTSGDPKGVVLTHETIATFVS 201
I++TSGT+G PKGV ++H+ + +F +
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTN 175
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 29/190 (15%)
Query: 5 KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCP 63
K P + L W V+GK +W ++E+ E Q + L A G + G RV + P
Sbjct: 55 KRPPSPALWW---VNGKGKELMW-NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110
Query: 64 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL--LSPDCRSA 121
+W + C LI +P + + + L ++ + D+ ++E+ ++ +C S
Sbjct: 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSL 170
Query: 122 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI----LPPQPFNICTIM 177
R++++V S W F L +NE + I
Sbjct: 171 -RIKLLVSEKSCDG---------------WLNFKKL--LNEASTTHHCVETGSQEASAIY 212
Query: 178 YTSGTSGDPK 187
+TSGTSG PK
Sbjct: 213 FTSGTSGLPK 222
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 421 VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 480
+R +FSGY NPD T +I ++ GD G +G + + R ++I S G +
Sbjct: 410 IRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIIN-SSGYRIGP 468
Query: 481 EYLENVYCVAPII 493
+EN P +
Sbjct: 469 SEVENALMEHPAV 481
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 29/190 (15%)
Query: 5 KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCP 63
K P + L W V+GK +W ++E+ E Q + L A G + G RV + P
Sbjct: 55 KRPPSPALWW---VNGKGKELMW-NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110
Query: 64 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL--LSPDCRSA 121
+W + C LI +P + + + L ++ + D+ ++E+ ++ +C S
Sbjct: 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSL 170
Query: 122 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI----LPPQPFNICTIM 177
R++++V S W F L +NE + I
Sbjct: 171 -RIKLLVSEKSCDG---------------WLNFKKL--LNEASTTHHCVETGSQEASAIY 212
Query: 178 YTSGTSGDPK 187
+TSGTSG PK
Sbjct: 213 FTSGTSGLPK 222
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 421 VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 480
+R +FSGY NPD T +I ++ GD G +G + + R ++I S G +
Sbjct: 410 IRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIIN-SSGYRIGP 468
Query: 481 EYLENVYCVAPII 493
+EN P +
Sbjct: 469 SEVENALMEHPAV 481
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 82/211 (38%), Gaps = 28/211 (13%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
T+ ++Y L + L G+ G RV I ++V A I VPL G
Sbjct: 60 TWSQLYRRTLNVAQELSRCGST-GDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQG- 117
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
V D++ +LS + + ++ +++ + +A + G P
Sbjct: 118 ---------------GVTDERSDSVLS----DSSPVAILTTSSAVDDVVQHVARRPGESP 158
Query: 149 YSWDE--FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 206
S E L L N + + + YTSG++ P GVV++H+ + V+ L
Sbjct: 159 PSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVR--VNFEQLM 216
Query: 207 LDQFEDKMTV---DDVYLSFLPLAHILDRVI 234
F D + + +S+LP H + VI
Sbjct: 217 SGYFADTDGIPPPNSALVSWLPFYHDMGLVI 247
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 111 KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL-HLGKVNEMEILPPQ 169
K L D R+A VC + + E+ +T + F+ +L + +IL
Sbjct: 118 KSFLLRDSRAAX---AFVCDNNF--DGVELPPETKVLDTKNQSFIENLSTQDTSDILNNY 172
Query: 170 PFNI-CTIMYTSGTSGDPKGVVLTHETIATF 199
P N+ ++YTSG++G PKGV ++ +++F
Sbjct: 173 PENLDAYLLYTSGSTGTPKGVRVSRHNLSSF 203
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 416 CGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQILPNGVVKIIDRKKNLIKIS 473
GE+ + G + +GY PD I+G + TGDI + + + + RK +K+
Sbjct: 374 AGELVIEGSLVANGYLNRPDAKGFCDINGRKXYRTGDIVRXDADSSILFLGRKDEQVKV- 432
Query: 474 QGEYVAL-EYLENVYCVAPIIEDI 496
+G+ + L E E + ++P D+
Sbjct: 433 RGQRLELGEVSEVIRSLSPTDIDV 456
>pdb|1DPE|A Chain A, Dipeptide-Binding Protein
Length = 507
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 14/120 (11%)
Query: 85 TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 144
T P +L A ++ F D + P +A+R+ M+ A+ ++ VQ
Sbjct: 325 TYDPEKAKALLKEAGLEKGFSIDLWAMPVQRPYNPNARRMAEMI-----QADWAKVGVQA 379
Query: 145 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 204
I Y W E+L K E + + +M +G +GDP T + A G +
Sbjct: 380 KIVTYEWGEYLKRAKDGEHQTV---------MMGWTGDNGDPDNFFATEFSCAASEQGSN 430
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 66/168 (39%), Gaps = 31/168 (18%)
Query: 336 LRLVISGGAP----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 391
L++ I G P L EVE RV A + YGL+E GP C C+ GP
Sbjct: 214 LKIGIFGAEPWTQALRNEVET--RVGIDALDI--YGLSEVMGPGVAC----ECVETKDGP 265
Query: 392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 451
V Y + DP GEV G G LT+E++ + T D+
Sbjct: 266 VIWEDHF---------YPEIIDPVTGEVLPDGS---QGELVFTSLTKEAMPVIRYRTRDL 313
Query: 452 GQILP------NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 493
+LP + KI R +++ I +G V +E + P++
Sbjct: 314 TALLPPTARAMRRLAKITGRSDDML-IVRGVNVFPSQIEEIVVALPLL 360
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 25/176 (14%)
Query: 29 TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 87
TYKE+ EEV Q+ L S G G V +Y P+ + + A + + I ++
Sbjct: 115 TYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFS 174
Query: 88 PGAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQ-- 137
++ ++ + V D+ + K ++ R +R ++ +
Sbjct: 175 SNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA 234
Query: 138 ----KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 189
+++ T K Y P + ++YTSG++G PKGV
Sbjct: 235 FHAPRDLDWATEKKKYK----------TYYPCTPVDSEDPLFLLYTSGSTGAPKGV 280
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 71/187 (37%), Gaps = 38/187 (20%)
Query: 332 LGGRLRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG 390
LGG LR +++GG LS V L LV GYG TE T C C V T
Sbjct: 275 LGG-LRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENT--TFTC-----CHVVTD- 325
Query: 391 PVSVYSELRLEEVP--------------EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 436
+L +++P E G + GE+ G L GY +
Sbjct: 326 -----DDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAAR 380
Query: 437 TRESIID--------GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 488
TR S ++ + TGD + G ++ I R +K++ G + L LE +
Sbjct: 381 TRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLN-GYRLDLPALEQRFR 439
Query: 489 VAPIIED 495
P I D
Sbjct: 440 RQPGILD 446
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 80/211 (37%), Gaps = 28/211 (13%)
Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
T+ ++Y L + L G+ G RV I ++V A I VPL G
Sbjct: 60 TWSQLYRRTLNVAQELSRCGST-GDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQG- 117
Query: 89 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
V D++ +LS + + ++ +++ + +A + G P
Sbjct: 118 ---------------GVTDERSDSVLS----DSSPVAILTTSSAVDDVVQHVARRPGESP 158
Query: 149 YSWDE--FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 206
S E L L N + + + YTSG++ P GVV +H+ + V+ L
Sbjct: 159 PSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVXSHQNVR--VNFEQLX 216
Query: 207 LDQFEDKMTV---DDVYLSFLPLAHILDRVI 234
F D + + +S+LP H VI
Sbjct: 217 SGYFADTDGIPPPNSALVSWLPFYHDXGLVI 247
>pdb|2GLF|A Chain A, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|B Chain B, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|C Chain C, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|D Chain D, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
Length = 450
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE 370
K+ + G +I+G PLS E +E ++ L + YG+TE
Sbjct: 174 KISEKFKGENLXLIAGTIPLSGEEKEAVKTNVLKILNEXYGITE 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,362,603
Number of Sequences: 62578
Number of extensions: 843599
Number of successful extensions: 2132
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1962
Number of HSP's gapped (non-prelim): 129
length of query: 611
length of database: 14,973,337
effective HSP length: 105
effective length of query: 506
effective length of database: 8,402,647
effective search space: 4251739382
effective search space used: 4251739382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)