Query 007257
Match_columns 611
No_of_seqs 196 out of 2049
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 21:13:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.7E-76 6E-81 640.0 39.6 494 2-605 34-539 (539)
2 3etc_A AMP-binding protein; ad 100.0 1E-74 3.4E-79 630.1 46.0 497 2-597 65-579 (580)
3 3ni2_A 4-coumarate:COA ligase; 100.0 1.2E-74 4.1E-79 625.6 45.7 495 1-597 30-535 (536)
4 3g7s_A Long-chain-fatty-acid-- 100.0 2.6E-75 9E-80 632.6 40.4 498 2-598 28-543 (549)
5 3o83_A Peptide arylation enzym 100.0 6.6E-75 2.3E-79 628.4 36.6 491 2-598 39-541 (544)
6 1v25_A Long-chain-fatty-acid-C 100.0 1E-74 3.6E-79 626.4 37.9 493 2-598 27-537 (541)
7 4fuq_A Malonyl COA synthetase; 100.0 2.6E-74 8.8E-79 617.7 39.2 486 2-597 9-500 (503)
8 1pg4_A Acetyl-COA synthetase; 100.0 8.3E-74 2.8E-78 631.5 43.9 512 2-601 85-625 (652)
9 3r44_A Fatty acyl COA syntheta 100.0 4.8E-74 1.6E-78 617.7 40.9 486 2-599 25-515 (517)
10 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.4E-73 4.7E-78 612.9 42.6 479 2-596 11-503 (504)
11 2d1s_A Luciferase, luciferin 4 100.0 1.5E-73 5.1E-78 618.0 42.2 500 2-602 35-548 (548)
12 3c5e_A Acyl-coenzyme A synthet 100.0 9.2E-73 3.1E-77 613.9 47.4 496 3-597 53-562 (570)
13 3rix_A Luciferase, luciferin 4 100.0 4E-74 1.4E-78 623.5 35.4 507 2-604 29-548 (550)
14 1ry2_A Acetyl-coenzyme A synth 100.0 1.2E-73 4.1E-78 630.3 39.0 521 2-602 91-642 (663)
15 3ivr_A Putative long-chain-fat 100.0 2.2E-73 7.7E-78 612.3 33.1 481 2-598 15-502 (509)
16 3e7w_A D-alanine--poly(phospho 100.0 2.1E-72 7.2E-77 604.8 38.8 477 2-597 10-503 (511)
17 3fce_A D-alanine--poly(phospho 100.0 8E-73 2.7E-77 608.5 35.5 479 2-598 10-505 (512)
18 3rg2_A Enterobactin synthase c 100.0 2E-71 6.7E-76 610.0 46.5 488 7-601 39-538 (617)
19 2v7b_A Benzoate-coenzyme A lig 100.0 1.9E-71 6.5E-76 600.2 45.3 489 2-593 33-528 (529)
20 4dg8_A PA1221; ANL superfamily 100.0 5.7E-72 1.9E-76 611.7 38.0 465 2-601 36-517 (620)
21 4gr5_A Non-ribosomal peptide s 100.0 2.8E-72 9.6E-77 611.3 33.9 466 2-594 84-568 (570)
22 3l8c_A D-alanine--poly(phospho 100.0 8.3E-72 2.8E-76 602.2 34.8 483 2-599 13-514 (521)
23 1amu_A GRSA, gramicidin synthe 100.0 2.1E-71 7.1E-76 602.4 36.9 464 2-595 48-527 (563)
24 3ipl_A 2-succinylbenzoate--COA 100.0 1.6E-71 5.6E-76 596.9 32.7 483 2-598 10-498 (501)
25 3nyq_A Malonyl-COA ligase; A/B 100.0 9.4E-71 3.2E-75 590.1 37.9 465 2-593 31-504 (505)
26 3tsy_A Fusion protein 4-coumar 100.0 8E-71 2.7E-75 636.0 36.2 510 1-606 69-591 (979)
27 3ite_A SIDN siderophore synthe 100.0 8.2E-70 2.8E-74 591.8 29.9 509 2-607 29-554 (562)
28 3kxw_A Saframycin MX1 syntheta 100.0 2.7E-68 9.2E-73 584.0 37.5 492 2-597 20-567 (590)
29 3gqw_A Fatty acid AMP ligase; 100.0 5.2E-68 1.8E-72 580.4 39.5 496 2-607 30-573 (576)
30 2vsq_A Surfactin synthetase su 100.0 9.1E-67 3.1E-71 616.8 41.3 467 2-594 473-957 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 3.2E-56 1.1E-60 476.0 28.5 390 2-465 33-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.2E-50 4.1E-55 413.6 18.8 313 170-598 36-355 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 3.5E-45 1.2E-49 385.2 20.6 333 167-589 81-429 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 2.2E-44 7.5E-49 379.8 25.0 338 167-593 88-440 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 8.4E-44 2.9E-48 374.7 24.6 335 166-590 85-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.4E-28 8E-33 250.9 18.5 239 168-475 88-367 (369)
37 3lax_A Phenylacetate-coenzyme 99.3 2.6E-12 8.8E-17 105.9 8.1 98 464-588 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.2 4.4E-11 1.5E-15 98.2 7.1 99 464-589 1-102 (109)
39 4eql_A 4-substituted benzoates 98.9 1.3E-08 4.4E-13 107.2 13.4 137 331-490 294-447 (581)
40 4epl_A Jasmonic acid-amido syn 98.8 1.3E-07 4.4E-12 99.3 16.3 163 330-514 298-488 (581)
41 4b2g_A GH3-1 auxin conjugating 98.7 1.2E-07 4.2E-12 99.9 14.7 160 331-513 299-492 (609)
42 2y27_A Phenylacetate-coenzyme 93.3 0.55 1.9E-05 48.0 12.0 105 7-114 89-197 (437)
43 3qov_A Phenylacetate-coenzyme 93.1 0.47 1.6E-05 48.6 11.0 123 8-133 86-217 (436)
44 2y4o_A Phenylacetate-coenzyme 93.1 0.61 2.1E-05 47.8 11.9 105 7-114 91-199 (443)
45 3ipl_A 2-succinylbenzoate--COA 89.9 3.4 0.00012 42.9 13.6 121 6-132 161-284 (501)
46 3hgu_A EHPF; phenazine, antibi 88.5 2 6.7E-05 42.7 10.1 122 6-131 89-240 (369)
47 2d1s_A Luciferase, luciferin 4 84.8 5.4 0.00019 41.9 11.6 121 8-132 192-319 (548)
48 1mdb_A 2,3-dihydroxybenzoate-A 84.6 11 0.00039 39.3 14.0 122 6-133 180-309 (539)
49 4dg8_A PA1221; ANL superfamily 83.2 6.8 0.00023 42.0 11.6 122 6-133 162-287 (620)
50 3r44_A Fatty acyl COA syntheta 81.6 14 0.00047 38.4 13.1 120 6-132 168-294 (517)
51 3fce_A D-alanine--poly(phospho 79.8 11 0.00037 39.1 11.6 122 6-132 142-271 (512)
52 3o83_A Peptide arylation enzym 79.4 11 0.00039 39.4 11.6 103 6-114 189-296 (544)
53 3rg2_A Enterobactin synthase c 79.4 15 0.00052 39.1 12.8 122 6-133 182-313 (617)
54 3e7w_A D-alanine--poly(phospho 79.0 13 0.00046 38.4 11.9 122 6-132 141-270 (511)
55 4gr5_A Non-ribosomal peptide s 78.4 8.7 0.0003 40.6 10.3 122 6-133 212-337 (570)
56 3rix_A Luciferase, luciferin 4 78.3 11 0.00036 39.7 10.9 123 7-132 189-317 (550)
57 3kxw_A Saframycin MX1 syntheta 76.6 14 0.00047 39.1 11.4 122 6-132 165-299 (590)
58 3ivr_A Putative long-chain-fat 76.3 31 0.0011 35.5 13.8 119 6-131 158-281 (509)
59 1t5h_X 4-chlorobenzoyl COA lig 76.2 11 0.00039 38.9 10.3 121 6-132 151-282 (504)
60 3ni2_A 4-coumarate:COA ligase; 75.2 12 0.0004 39.1 10.2 125 6-133 176-308 (536)
61 3c5e_A Acyl-coenzyme A synthet 73.0 19 0.00065 37.9 11.2 123 6-133 204-333 (570)
62 4gs5_A Acyl-COA synthetase (AM 72.4 14 0.00048 36.2 9.4 117 7-131 36-157 (358)
63 1v25_A Long-chain-fatty-acid-C 71.7 14 0.00046 38.7 9.6 123 7-132 175-303 (541)
64 1pg4_A Acetyl-COA synthetase; 69.9 24 0.00081 37.9 11.2 123 7-133 255-389 (652)
65 1amu_A GRSA, gramicidin synthe 67.8 23 0.0008 37.1 10.5 119 6-132 180-303 (563)
66 3g7s_A Long-chain-fatty-acid-- 67.7 38 0.0013 35.3 12.1 107 169-279 32-140 (549)
67 1ry2_A Acetyl-coenzyme A synth 66.8 33 0.0011 36.8 11.6 122 7-132 261-394 (663)
68 3etc_A AMP-binding protein; ad 66.0 24 0.00084 37.2 10.2 123 6-133 223-352 (580)
69 3ezx_A MMCP 1, monomethylamine 63.4 45 0.0015 29.8 10.0 53 217-269 93-149 (215)
70 3nyq_A Malonyl-COA ligase; A/B 63.2 48 0.0016 34.1 11.6 103 6-115 153-259 (505)
71 2vsq_A Surfactin synthetase su 62.8 19 0.00066 42.3 9.3 122 6-133 605-731 (1304)
72 2v7b_A Benzoate-coenzyme A lig 59.3 29 0.001 35.9 9.2 104 6-115 181-290 (529)
73 3t5a_A Long-chain-fatty-acid-- 58.6 65 0.0022 32.6 11.6 107 169-279 37-148 (480)
74 4fuq_A Malonyl COA synthetase; 57.9 36 0.0012 35.0 9.6 99 170-277 14-114 (503)
75 3tsy_A Fusion protein 4-coumar 57.7 34 0.0012 38.8 10.0 124 6-132 223-354 (979)
76 3gqw_A Fatty acid AMP ligase; 56.4 42 0.0014 35.1 10.0 104 6-113 174-284 (576)
77 3ite_A SIDN siderophore synthe 55.0 68 0.0023 33.4 11.2 123 7-132 174-304 (562)
78 3l8c_A D-alanine--poly(phospho 53.4 90 0.0031 32.0 11.8 123 6-131 143-273 (521)
79 3tbh_A O-acetyl serine sulfhyd 48.1 58 0.002 31.4 8.6 67 42-108 60-127 (334)
80 3vc3_A Beta-cyanoalnine syntha 44.9 73 0.0025 30.8 8.8 66 43-108 76-142 (344)
81 2cvi_A 75AA long hypothetical 33.0 1.1E+02 0.0036 22.2 6.1 35 480-515 15-49 (83)
82 4h1h_A LMO1638 protein; MCCF-l 28.8 1.2E+02 0.0042 29.0 7.3 60 48-107 8-86 (327)
83 4eez_A Alcohol dehydrogenase 1 28.5 2.1E+02 0.0072 27.2 9.2 77 27-106 136-215 (348)
84 1z7w_A Cysteine synthase; tran 28.2 1.9E+02 0.0065 27.4 8.6 65 44-108 57-122 (322)
85 2q3b_A Cysteine synthase A; py 27.3 2.2E+02 0.0075 26.8 8.8 66 42-108 56-122 (313)
86 4aec_A Cysteine synthase, mito 27.1 1.9E+02 0.0066 28.8 8.6 64 44-107 165-229 (430)
87 3sr3_A Microcin immunity prote 26.8 1.5E+02 0.0052 28.5 7.5 60 48-107 9-87 (336)
88 2egu_A Cysteine synthase; O-ac 25.5 2.3E+02 0.008 26.6 8.7 65 43-108 55-120 (308)
89 3tla_A MCCF; serine protease, 25.3 1.6E+02 0.0055 28.7 7.5 60 48-107 39-117 (371)
90 2zbc_A 83AA long hypothetical 25.2 1.8E+02 0.0062 20.7 6.2 34 480-514 15-48 (83)
91 3ijw_A Aminoglycoside N3-acety 25.0 48 0.0017 30.8 3.4 25 38-62 18-42 (268)
92 1y80_A Predicted cobalamin bin 24.9 3.5E+02 0.012 23.6 10.9 90 215-354 87-189 (210)
93 3ju7_A Putative PLP-dependent 24.7 1.4E+02 0.0047 29.1 7.1 58 44-104 70-134 (377)
94 4e5s_A MCCFLIKE protein (BA_56 24.7 1.6E+02 0.0056 28.2 7.3 60 48-107 8-86 (331)
95 2pqm_A Cysteine synthase; OASS 24.0 2.2E+02 0.0076 27.3 8.3 64 44-108 69-133 (343)
96 3sma_A FRBF; N-acetyl transfer 23.1 55 0.0019 30.6 3.4 30 26-62 20-49 (286)
97 2nyg_A YOKD protein; PFAM02522 23.0 55 0.0019 30.5 3.4 24 39-62 17-40 (273)
98 3ist_A Glutamate racemase; str 22.5 1.4E+02 0.0048 27.7 6.1 71 4-81 26-96 (269)
99 1ve1_A O-acetylserine sulfhydr 22.3 3.2E+02 0.011 25.5 8.9 65 43-108 50-117 (304)
100 1zsy_A Mitochondrial 2-enoyl t 21.7 2.2E+02 0.0075 27.4 7.8 79 27-106 139-223 (357)
101 2v03_A Cysteine synthase B; py 21.4 3.3E+02 0.011 25.4 8.8 64 43-107 51-115 (303)
102 1eg5_A Aminotransferase; PLP-d 21.2 2.7E+02 0.0091 26.6 8.4 32 75-106 88-120 (384)
103 1ofu_X SULA, hypothetical prot 21.0 2.6E+02 0.0088 22.1 6.5 51 41-91 47-99 (119)
104 3tqh_A Quinone oxidoreductase; 20.5 2E+02 0.0069 27.1 7.1 75 27-106 125-203 (321)
105 2i2x_B MTAC, methyltransferase 20.3 2.8E+02 0.0096 25.3 7.8 89 215-352 122-220 (258)
No 1
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.7e-76 Score=640.03 Aligned_cols=494 Identities=19% Similarity=0.179 Sum_probs=402.3
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 34 ~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vp 104 (539)
T 1mdb_A 34 RAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVF 104 (539)
T ss_dssp HHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEec
Confidence 46789999999976 3 79999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHH----HHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL 157 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (611)
++|.++.+++.++++.++++++|+++.... ..........+..+.++..++.. .+.++...
T Consensus 105 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 169 (539)
T 1mdb_A 105 ALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE---------------EFLPLEDL 169 (539)
T ss_dssp CCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT---------------TSEEGGGC
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc---------------chhhhhhc
Confidence 999999999999999999999999875321 11111111223344444433211 01111111
Q ss_pred ccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH--H
Q 007257 158 GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI--E 235 (611)
Q Consensus 158 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~--~ 235 (611)
. ..........++++++++|||||||.||||+++|+++.+.+......+ ++..+|++++.+|++|.+++.. +
T Consensus 170 ~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~~~~~~~~ 243 (539)
T 1mdb_A 170 H-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAHNYPLSSPGV 243 (539)
T ss_dssp C-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred c-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeecccccchhhHHHH
Confidence 1 111122345789999999999999999999999999998887776666 7889999999999999999875 6
Q ss_pred HHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCC
Q 007257 236 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 314 (611)
Q Consensus 236 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (611)
+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+.....
T Consensus 244 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------ 293 (539)
T 1mdb_A 244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR------------------------------ 293 (539)
T ss_dssp HHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC------------------------------
T ss_pred HHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc------------------------------
Confidence 778999999999876 9999999999999999999999999887632211
Q ss_pred CcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCcc
Q 007257 315 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 394 (611)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~ 394 (611)
...+++||.+++||+++++++.+++.+.+|+++++.||+||++..+...........+++|+|++
T Consensus 294 ---------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~ 358 (539)
T 1mdb_A 294 ---------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMS 358 (539)
T ss_dssp ---------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESS
T ss_pred ---------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccC
Confidence 01235899999999999999999999989999999999999653332211111223478999997
Q ss_pred C-eeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEc
Q 007257 395 Y-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 472 (611)
Q Consensus 395 ~-~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~ 472 (611)
+ .+++|+| +++ .+++.|+.|||+|+||+++.||+++++.|.+.| .+|||+|||+|++|+||++++.||.||+||+
T Consensus 359 ~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~ 435 (539)
T 1mdb_A 359 PYDESRVWD-DHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINR 435 (539)
T ss_dssp TTCEEEEEC-TTS--CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEEC
T ss_pred CCceEEEEC-CCC--CCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEE
Confidence 5 5899998 554 567788999999999999999999999999999 6999999999999999999999999999996
Q ss_pred CCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHH
Q 007257 473 SQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK 549 (611)
Q Consensus 473 ~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 549 (611)
+|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++++. . + .++|+
T Consensus 436 -~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~---------~--------~--------~~~l~ 489 (539)
T 1mdb_A 436 -GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA---------P--------K--------AAELK 489 (539)
T ss_dssp -SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC---------C--------C--------HHHHH
T ss_pred -CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC---------C--------C--------HHHHH
Confidence 9999999999999999999999999997654 4789999877421 0 1 13445
Q ss_pred HHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 007257 550 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 605 (611)
Q Consensus 550 ~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~~ 605 (611)
+++++..||.|++|+.|+++++. |+|++||++|++|+++|+++|+++|++
T Consensus 490 ~~l~~~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~i~~~y~~ 539 (539)
T 1mdb_A 490 AFLRERGLAAYKIPDRVEFVESF------PQTGVGKVSKKALREAISEKLLAGFKK 539 (539)
T ss_dssp HHHHHTTCCGGGSCSEEEECSSC------CBCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred HHHHhCCCCcccCCCEEEEeccC------CCCCCcCEeHHHHHHHHHHHHhccccC
Confidence 55554459999999999998765 999999999999999999999999974
No 2
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1e-74 Score=630.12 Aligned_cols=497 Identities=16% Similarity=0.145 Sum_probs=390.2
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+++. ++ .+..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 65 ~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~vp 140 (580)
T 3etc_A 65 YARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVP 140 (580)
T ss_dssp HHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEEEE
T ss_pred HHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEEEEe
Confidence 57889999999987 43 355689999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhH--HHHhccccccccCc-cEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG 158 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~--~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (611)
+++.++.+++.+++++++++++|++.+.. ..+.... ...+.. ..++.++... ...+..+.+.....
T Consensus 141 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 209 (580)
T 3etc_A 141 ATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAH-AECGDIPLKKAKVGGDV----------LEGWIDFRKELEES 209 (580)
T ss_dssp CCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHH-HHHCSCCCEEEEESSSC----------CTTCEEHHHHHHHS
T ss_pred CCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHh-hhCCCcceEEEEeCCcc----------ccccccHHHHHhhC
Confidence 99999999999999999999999987643 2222111 112222 3444444321 12355666665443
Q ss_pred cccCCcC---CCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-
Q 007257 159 KVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI- 234 (611)
Q Consensus 159 ~~~~~~~---~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~- 234 (611)
....... ....++++++++|||||||.||+|.++|.++...+......+ ++..++++++..|++|..+...
T Consensus 210 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 284 (580)
T 3etc_A 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYTVADSGWGKCVWGK 284 (580)
T ss_dssp CSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEECCCTTSTHHHHHT
T ss_pred CcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEEeCChHHHHHHHHH
Confidence 2221111 246789999999999999999999999999887776544444 7888999999999999888775
Q ss_pred HHHHhhcCceEEEecC---ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcC
Q 007257 235 EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 311 (611)
Q Consensus 235 ~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (611)
++.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+..
T Consensus 285 ~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------------------ 334 (580)
T 3etc_A 285 LYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------------------ 334 (580)
T ss_dssp THHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------------------------------
T ss_pred HHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------------------------------
Confidence 5667889999988742 8999999999999999999999998876410
Q ss_pred CCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCC
Q 007257 312 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 391 (611)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~ 391 (611)
.....+++||.+++||+++++++.++|.+.+|+++++.||+||++..++..... ....+++|+
T Consensus 335 ----------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~ 397 (580)
T 3etc_A 335 ----------------LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM-EPKPGSIGK 397 (580)
T ss_dssp ----------------C---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS-CCCTTCCBE
T ss_pred ----------------cccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCC-CCCCCcccc
Confidence 011123589999999999999999999998999999999999998776655433 344589999
Q ss_pred CccCeeEEEeecCCCCCCCCCCCCCcEEEEec-----CCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEecc
Q 007257 392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 466 (611)
Q Consensus 392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~-----~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~ 466 (611)
|+++++++|+| +++ .+++.|+.|||+|+| +.++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.
T Consensus 398 p~~~~~v~ivd-~~g--~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~ 474 (580)
T 3etc_A 398 PTPGYKIELMD-RDG--RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRA 474 (580)
T ss_dssp ECTTCEEEEEC-TTS--CBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEES
T ss_pred CCCCCEEEEEC-CCC--CCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecC
Confidence 99999999999 554 467788999999997 7899999999999999999999999999999999999999999
Q ss_pred CCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHH
Q 007257 467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY 543 (611)
Q Consensus 467 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (611)
||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.+.|+|++.++.. ...+
T Consensus 475 dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~-----------------~~~~---- 532 (580)
T 3etc_A 475 DDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYT-----------------PSDS---- 532 (580)
T ss_dssp SSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC-----------------CCHH----
T ss_pred CCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCC-----------------CCHH----
Confidence 999997 8999999999999999999999999997755 47889999887531 1122
Q ss_pred HHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257 544 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 597 (611)
Q Consensus 544 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~ 597 (611)
+.++|+++++ +.|+.|++|+.|+++++. |+|++||++|++|++++++
T Consensus 533 ~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 533 LKNELQDHVK-NVTAPYKYPRIIEFVPEL------PKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp HHHHHHHHHH-HHSCGGGCCSEEEEECC--------------------------
T ss_pred HHHHHHHHHH-hhCCCccCCeEEEEeCCC------CCCCCcCCcHHHHHhHhhc
Confidence 2344555554 679999999999999765 9999999999999998865
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.2e-74 Score=625.62 Aligned_cols=495 Identities=26% Similarity=0.316 Sum_probs=405.5
Q ss_pred CccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257 1 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV 80 (611)
Q Consensus 1 ~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~ 80 (611)
++|+++||++|+++. ++ + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 30 ~~a~~~p~~~a~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~v 102 (536)
T 3ni2_A 30 ENLSNHSSKPCLING---AN--G--DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIIT 102 (536)
T ss_dssp TTGGGSTTSEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEE
T ss_pred HHhhcCCCceEEEEC---CC--C--CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEe
Confidence 468899999999975 21 1 6899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257 81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 160 (611)
Q Consensus 81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (611)
|++|.++.+++.++++.++++++|++......+....... .. .++.++... .....+.++......
T Consensus 103 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~~~~~-----------~~~~~~~~~~~~~~~ 168 (536)
T 3ni2_A 103 AANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCVDSAP-----------DGCLHFSELTQADEN 168 (536)
T ss_dssp ECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEESSCCC-----------TTCEETHHHHTSCGG
T ss_pred ccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEecCCC-----------CCccCHHHHhhcccc
Confidence 9999999999999999999999999987665543322111 11 344443321 124556666544322
Q ss_pred cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHh
Q 007257 161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFF 239 (611)
Q Consensus 161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l 239 (611)
........++++++++|||||||.||+|+++|+++.+.+........ ....+..++++++.+|++|.+++.. ++.++
T Consensus 169 -~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l 246 (536)
T 3ni2_A 169 -EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN-PNLYFHSEDVILCVLPMFHIYALNSIMLCGL 246 (536)
T ss_dssp -GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-CSSCCCTTCCEEECSCTTSHHHHHHTHHHHH
T ss_pred -ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-ccccCCCCCEEEEecChHHHHHHHHHHHHHH
Confidence 22334567899999999999999999999999999887765433211 0125778999999999999999865 56679
Q ss_pred hcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 007257 240 RRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 318 (611)
Q Consensus 240 ~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (611)
..|+++++.+. ++..+++.++++++|++.++|+++..+.+..
T Consensus 247 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------------------- 289 (536)
T 3ni2_A 247 RVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP------------------------------------- 289 (536)
T ss_dssp HHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS-------------------------------------
T ss_pred hcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc-------------------------------------
Confidence 99999999876 9999999999999999999999998876421
Q ss_pred HHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccC----CCccccCccCCCc
Q 007257 319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP----DEMCMVGTAGPVS 393 (611)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~----~~~~~~~~~G~~~ 393 (611)
..+. ..+++||.+++||+++++++.+.+.+.+ ++++++.||+||++.+++.+.. ......+++|.|+
T Consensus 290 ~~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~ 361 (536)
T 3ni2_A 290 DLDK--------HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVV 361 (536)
T ss_dssp CGGG--------SCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEEC
T ss_pred cccc--------CCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeC
Confidence 1111 1235899999999999999999999988 8999999999999987665421 1233458899999
Q ss_pred cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEc
Q 007257 394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 472 (611)
Q Consensus 394 ~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~ 472 (611)
++++++|+| +++ ..+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+||+
T Consensus 362 ~~~~~~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~ 439 (536)
T 3ni2_A 362 RNAEMKIVD-PET-GASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKY 439 (536)
T ss_dssp SSCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEE
T ss_pred CCcEEEEEe-CCC-CcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEE
Confidence 999999998 443 3667788999999999999999999999999999 7899999999999999999999999999998
Q ss_pred CCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHH
Q 007257 473 SQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK 549 (611)
Q Consensus 473 ~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 549 (611)
+|++|+|.+||++|.+||+|.+|+|++.++. +.++|+|++.++.. . + .++|+
T Consensus 440 -~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~--------~--------~--------~~~l~ 494 (536)
T 3ni2_A 440 -KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQ--------A--------T--------EDEIK 494 (536)
T ss_dssp -TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC--------C--------C--------HHHHH
T ss_pred -CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCC--------C--------C--------HHHHH
Confidence 9999999999999999999999999986544 47899998876420 0 1 12445
Q ss_pred HHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257 550 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 597 (611)
Q Consensus 550 ~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~ 597 (611)
++++ ++||.|++|+.++++++. |+|++||++|++|+++|++
T Consensus 495 ~~l~-~~l~~~~~p~~i~~v~~l------P~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 495 QYIS-KQVIFYKRIKRVFFIEAI------PKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp HHHH-TTSCGGGCCSEEEECSCC------CBCTTSCBCHHHHHTC---
T ss_pred HHHH-HhccCCccccEEEEEecC------CCCCCCCeeHHHHHHHhcc
Confidence 5554 789999999999998765 9999999999999998754
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.6e-75 Score=632.61 Aligned_cols=498 Identities=20% Similarity=0.227 Sum_probs=378.3
Q ss_pred ccccCCCCCceeeeccccC--CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEE
Q 007257 2 SVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC 79 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~--~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 79 (611)
+|+++||++|+++. ++ ..+..+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 28 ~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 104 (549)
T 3g7s_A 28 AAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATP 104 (549)
T ss_dssp HHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred HHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEE
Confidence 57889999999987 42 23445899999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccc
Q 007257 80 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK 159 (611)
Q Consensus 80 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (611)
+|++|.++.+++.+++++++++++|++......+...... .....++..+.. ..++.++.....
T Consensus 105 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------------~~~~~~~~~~~~ 168 (549)
T 3g7s_A 105 VPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE--------------VNSLSEVMDSGS 168 (549)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS--------------SSCHHHHHHHSC
T ss_pred EccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC--------------CcCHHHHHhcCc
Confidence 9999999999999999999999999998776554332221 124455554422 234555554432
Q ss_pred ccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHh
Q 007257 160 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF 239 (611)
Q Consensus 160 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l 239 (611)
..........++++++|+|||||||.||+|+++|.++.+.+......+ ++..+|++++.+|++|.+++...+.++
T Consensus 169 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~~~~~~~~~l 243 (549)
T 3g7s_A 169 EDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIVGCMPMFHSAEFGLVNLMV 243 (549)
T ss_dssp SCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEECCSCTTSHHHHHHHTTHH
T ss_pred cccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEEEeCcHHHHHHHHHHHHHH
Confidence 221222222348999999999999999999999999999988877766 788999999999999999988877789
Q ss_pred hcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 007257 240 RRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 318 (611)
Q Consensus 240 ~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (611)
..|+++++.+. ++..+++.++++++|+++++|+++..|.+.......
T Consensus 244 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------------- 291 (549)
T 3g7s_A 244 TVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK-------------------------------- 291 (549)
T ss_dssp HHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC--------------------------------
T ss_pred hcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc--------------------------------
Confidence 99999999876 999999999999999999999999998764322100
Q ss_pred HHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHH----cC---CceeeccccCCCCCceeeccCCCccccCccCC
Q 007257 319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 391 (611)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~----~~---~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~ 391 (611)
...++++|.+++||+++++++.+.+.+. ++ +.+++.||+||++.+++..........+++|.
T Consensus 292 -----------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~ 360 (549)
T 3g7s_A 292 -----------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGV 360 (549)
T ss_dssp -----------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCE
T ss_pred -----------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCccc
Confidence 0112589999999999999999999887 66 89999999999999888766555455689999
Q ss_pred CccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc---cCC--ccccCceEEEccCCeEEEEecc
Q 007257 392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WFHTGDIGQILPNGVVKIIDRK 466 (611)
Q Consensus 392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~g--~~~TGD~~~~~~dG~l~~~GR~ 466 (611)
|+++++++|+|. ++ ..+++.|+.|||+|+||+++.||+++++.+.+.| .+| ||+|||+|++|+||++++.||.
T Consensus 361 p~~~~~~~i~d~-~~-g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~ 438 (549)
T 3g7s_A 361 PMSDIELKVISL-ED-GRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRV 438 (549)
T ss_dssp ECTTCEEEEECS-SS-CCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC
T ss_pred cCCCCEEEEEeC-CC-CcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccc
Confidence 999999999983 33 3567788999999999999999999999999998 677 9999999999999999999999
Q ss_pred CCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHH
Q 007257 467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY 543 (611)
Q Consensus 467 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (611)
||+||+ +|++|+|.+||++|.+||+|.+|+|++.++. +.++|+|+++++... .. +
T Consensus 439 dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~------~~--------~------- 496 (549)
T 3g7s_A 439 KEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRG------KV--------D------- 496 (549)
T ss_dssp -------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTT------SC--------C-------
T ss_pred cceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccC------cC--------C-------
Confidence 999997 9999999999999999999999999997765 378899998764200 00 1
Q ss_pred HHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257 544 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 598 (611)
Q Consensus 544 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 598 (611)
.++|+++++ ++||.|++|+.|+++++. |+|++||++|++|++++.+.
T Consensus 497 -~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 497 -EEDIIEWVR-ERISGYKRVREVEFVEEL------PRTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp -HHHHHHHHH-TTCC-----CCCCEEEEC------C-------------------
T ss_pred -HHHHHHHHH-HhccCcccceEEEEeccC------CCCCCcCEeHHHHHHHhhcc
Confidence 134445554 789999999999999765 99999999999999988653
No 5
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=6.6e-75 Score=628.39 Aligned_cols=491 Identities=14% Similarity=0.156 Sum_probs=324.0
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 39 ~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vp 109 (544)
T 3o83_A 39 GVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLN 109 (544)
T ss_dssp HHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEE
T ss_pred HHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEec
Confidence 57889999999986 3 79999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHH----HHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL 157 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (611)
+++.++.+++.+++++++++++|++..... ...............++..+.... ...+.++...
T Consensus 110 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 177 (544)
T 3o83_A 110 ALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------DFGLLDWIET 177 (544)
T ss_dssp CCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------SEEHHHHHHS
T ss_pred CCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------ccchhhhhhc
Confidence 999999999999999999999999876431 111111112234445555543311 1233444433
Q ss_pred ccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH--H
Q 007257 158 GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI--E 235 (611)
Q Consensus 158 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~--~ 235 (611)
............++++++++|||||||.||+|+++|+++.+.+......+ ++..+|++++.+|++|.+++.. .
T Consensus 178 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~~~~~~~~ 252 (544)
T 3o83_A 178 PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAPHNFMLSSPGA 252 (544)
T ss_dssp CCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred ccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcceEeecchHHH
Confidence 32222233456789999999999999999999999999999988877766 7889999999999999999875 6
Q ss_pred HHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCC
Q 007257 236 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 314 (611)
Q Consensus 236 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (611)
+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++........
T Consensus 253 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--------------------------- 305 (544)
T 3o83_A 253 LGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQ--------------------------- 305 (544)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHH---------------------------
T ss_pred HHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcccc---------------------------
Confidence 667999999999877 9999999999999999999999999887643221111
Q ss_pred CcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCc-
Q 007257 315 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS- 393 (611)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~- 393 (611)
+++||.+++||+++++++.+.+.+.+|+++++.||+||++..+............++|.|+
T Consensus 306 ------------------~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~ 367 (544)
T 3o83_A 306 ------------------IQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPIS 367 (544)
T ss_dssp ------------------HTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESC
T ss_pred ------------------CCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCceecC
Confidence 1489999999999999999999999999999999999988555443333334457889996
Q ss_pred cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEc
Q 007257 394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 472 (611)
Q Consensus 394 ~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~ 472 (611)
++++++|+| +++ .+++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+||+
T Consensus 368 ~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~ 444 (544)
T 3o83_A 368 SDDEIKIVD-EQY--REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINR 444 (544)
T ss_dssp TTCEEEEEC-TTS--CBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-----
T ss_pred CCcEEEEEC-CCC--CCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEe
Confidence 899999998 554 467788999999999999999999999999999 7999999999999999999999999999996
Q ss_pred CCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHH
Q 007257 473 SQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK 549 (611)
Q Consensus 473 ~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 549 (611)
+|++|+|.+||++|.+||+|.+|+|++.++. +.++|+|++.+... + ...++
T Consensus 445 -~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~-----------------~--------~~~l~ 498 (544)
T 3o83_A 445 -GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL-----------------K--------AVVLR 498 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC-----------------C--------HHHHH
Confidence 9999999999999999999999999997655 37888888765310 1 12334
Q ss_pred HHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257 550 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 598 (611)
Q Consensus 550 ~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 598 (611)
+++++..||.|++|+.|+++++. |+|++||++|++|++++++.
T Consensus 499 ~~~~~~~l~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 499 RHLMELGIAQYKLPDQIKLIESL------PLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp -------------------------------------------------
T ss_pred HHHHhCCCCcccCCcEEEEeccC------CCCCCCCCcHHHHHHHHhhc
Confidence 44443379999999999998765 99999999999999988653
No 6
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1e-74 Score=626.44 Aligned_cols=493 Identities=24% Similarity=0.292 Sum_probs=373.8
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 27 ~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 101 (541)
T 1v25_A 27 AAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT 101 (541)
T ss_dssp HHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEe
Confidence 46789999999864 21 23479999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 161 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (611)
++|.++.+++.++|+.++++++|++++....+.... ...+....++.+++... .....++++......
T Consensus 102 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~- 169 (541)
T 1v25_A 102 ANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLAYEEALGEEAD- 169 (541)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEEHHHHCCSCCC-
T ss_pred cCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------cccccHHHHhhccCC-
Confidence 999999999999999999999999987655443221 22344455665544321 023355555432211
Q ss_pred CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhc--ccccccccCCCCCCcEEEEecchhhHHHHHHHHHHh
Q 007257 162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF 239 (611)
Q Consensus 162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l 239 (611)
.....++++++++|||||||.||+|++||+++....... ...+ ++..+|++++.+|++|.+++...+.++
T Consensus 170 ---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~~~~~~~~~l 241 (541)
T 1v25_A 170 ---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHVNAWCLPYAAT 241 (541)
T ss_dssp ---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSHHHHTHHHHHH
T ss_pred ---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhhhHHHHHHHHH
Confidence 134567899999999999999999999999998765542 2223 678899999999999999987777889
Q ss_pred hcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257 240 RRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 317 (611)
Q Consensus 240 ~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (611)
..|+++++.+. ++..+++.++++++|+++++|+++..|.+.....
T Consensus 242 ~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------- 288 (541)
T 1v25_A 242 LVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST--------------------------------- 288 (541)
T ss_dssp HHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH---------------------------------
T ss_pred hcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc---------------------------------
Confidence 99999999864 8999999999999999999999999987643221
Q ss_pred hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC----------ccccC
Q 007257 318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----------MCMVG 387 (611)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~----------~~~~~ 387 (611)
...+++||.+++||+++++++.+.+ +.+|+++++.||+||++.+++...... ....+
T Consensus 289 ------------~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (541)
T 1v25_A 289 ------------GHRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKA 355 (541)
T ss_dssp ------------TCCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHT
T ss_pred ------------CCcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCccccccccC
Confidence 0122589999999999999999999 567999999999999998877654331 12347
Q ss_pred ccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc-CCccccCceEEEccCCeEEEEecc
Q 007257 388 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 466 (611)
Q Consensus 388 ~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~dG~l~~~GR~ 466 (611)
++|+|+++++++|+| +++...+.+.++.|||+|+||+++.||+++++.|++.|. +|||+|||+|++|+||++++.||.
T Consensus 356 ~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~ 434 (541)
T 1v25_A 356 KTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRL 434 (541)
T ss_dssp SCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEES
T ss_pred CCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecc
Confidence 899999999999999 666544433456899999999999999999999999994 999999999999999999999999
Q ss_pred CCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHH
Q 007257 467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY 543 (611)
Q Consensus 467 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (611)
||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.... . +
T Consensus 435 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------~--------~------- 489 (541)
T 1v25_A 435 KDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK---------P--------T------- 489 (541)
T ss_dssp SCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--------------------------------
T ss_pred cceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCC---------C--------C-------
Confidence 999997 9999999999999999999999999997765 4788888876211 0 1
Q ss_pred HHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257 544 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 598 (611)
Q Consensus 544 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 598 (611)
.+++.+++++.+||.|++|+.++++++. |+|++||++|++|++.|++.
T Consensus 490 -~~~l~~~~~~~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 490 -PEELNEHLLKAGFAKWQLPDAYVFAEEI------PRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp ------------CCCTTTSCSBC--------------------CCTTHHHHSTTS
T ss_pred -HHHHHHHHHhccCccccCCcEEEEeCCC------CCCCccCeeHHHHHHHHHHh
Confidence 1233444432389999999999988665 99999999999999987654
No 7
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=2.6e-74 Score=617.73 Aligned_cols=486 Identities=23% Similarity=0.295 Sum_probs=395.9
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+..... ++ +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 9 ~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vp 82 (503)
T 4fuq_A 9 LFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLP 82 (503)
T ss_dssp HHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEe
Confidence 5788999999986410 22 68999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 161 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (611)
++|.++.+++.+++++++++++|++......+....... . ..+..+..... ..+...... ...
T Consensus 83 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~~-~~~ 145 (503)
T 4fuq_A 83 LNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAAG-ASE 145 (503)
T ss_dssp CCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHHT-SCS
T ss_pred cCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhhc-CCC
Confidence 999999999999999999999999986544322211110 1 12333322210 011111111 112
Q ss_pred CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhh
Q 007257 162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFR 240 (611)
Q Consensus 162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~ 240 (611)
........++++++++|||||||.||+|+++|+++.+.+......+ ++..+|++++.+|++|.+++.. .+.+++
T Consensus 146 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 220 (503)
T 4fuq_A 146 AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVASNVTLF 220 (503)
T ss_dssp CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCHHHHHH
T ss_pred CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHHHHHHH
Confidence 2233456789999999999999999999999999999988877766 7889999999999999998765 566788
Q ss_pred cCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257 241 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL 319 (611)
Q Consensus 241 ~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (611)
.|+++++.+. ++..+++.++ ++|+++++|+++..+.+...
T Consensus 221 ~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~------------------------------------- 261 (503)
T 4fuq_A 221 ARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR------------------------------------- 261 (503)
T ss_dssp TTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT-------------------------------------
T ss_pred hCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC-------------------------------------
Confidence 9999998876 9999999998 89999999999998864211
Q ss_pred HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEE
Q 007257 320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR 399 (611)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~ 399 (611)
.. ...++++|.+++||+++++++.+.|.+.+|.++++.||+||++..++... ......+++|+|+++++++
T Consensus 262 ~~--------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~~~ 332 (503)
T 4fuq_A 262 LT--------KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSAR 332 (503)
T ss_dssp CS--------TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCTTCEEE
T ss_pred cc--------ccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCCCeEEE
Confidence 00 01125899999999999999999999999999999999999987755333 2334458899999999999
Q ss_pred EeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcCCceec
Q 007257 400 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 478 (611)
Q Consensus 400 i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v 478 (611)
|+| +++ ..+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+||+ +|++|
T Consensus 333 i~d-~~~-g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v 409 (503)
T 4fuq_A 333 VTD-PET-GKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-GGFNV 409 (503)
T ss_dssp EEC-TTT-CCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-TTEEE
T ss_pred EEE-CCC-CCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-CCEEE
Confidence 998 333 3677888999999999999999999999999999 5999999999999999999999999999997 99999
Q ss_pred CcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhC
Q 007257 479 ALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERN 555 (611)
Q Consensus 479 ~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 555 (611)
+|.+||++|.+||+|.+|+|++.++. +.++|+|+++++.. . +. +++.+++ ++
T Consensus 410 ~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~--------~--------~~--------~~l~~~l-~~ 464 (503)
T 4fuq_A 410 YPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGAT--------I--------DE--------AQVLHGL-DG 464 (503)
T ss_dssp CHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC--------C--------CH--------HHHHHHH-BT
T ss_pred CHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCC--------C--------CH--------HHHHHHH-Hh
Confidence 99999999999999999999987654 47889999876420 0 11 2344444 47
Q ss_pred CCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257 556 KLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 597 (611)
Q Consensus 556 ~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~ 597 (611)
+||.|++|+.|+++++. |+|++||++|++|+++|++
T Consensus 465 ~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 465 QLAKFKMPKKVIFVDDL------PRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp TBCGGGCCSEEEEESCC------CBCTTSCBCHHHHHHHTTT
T ss_pred hcccCCCCCEEEEECCC------CCCcccceeHHHHHHHHHH
Confidence 89999999999999765 9999999999999998864
No 8
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=8.3e-74 Score=631.49 Aligned_cols=512 Identities=16% Similarity=0.188 Sum_probs=410.4
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+++. ++..+..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 85 ~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vp 161 (652)
T 1pg4_A 85 HLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV 161 (652)
T ss_dssp GHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred HhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEe
Confidence 56778999999986 433455689999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHH---------HHhcccccc-ccCccEEEEecCCcHHHHHHhhhCCCceeeH
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 151 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~---------~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 151 (611)
+++.++.+++.++|++++++++|+++.... .+....... ......+++++...... .........|
T Consensus 162 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~~~~~~~~~ 237 (652)
T 1pg4_A 162 IFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI----DWQEGRDLWW 237 (652)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----CCCBTTEEEH
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc----cccCCCceeH
Confidence 999999999999999999999999876421 111111110 02345566655321100 0001123567
Q ss_pred HHHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhh-cccccccccCCCCCCcEEEEecchhhHH
Q 007257 152 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHIL 230 (611)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 230 (611)
+++..... .........++++++|+|||||||.||||+++|.+++..+.. ....+ ++..+|++++..|++|..
T Consensus 238 ~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~~~ 311 (652)
T 1pg4_A 238 RDLIEKAS-PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYWCTADVGWVT 311 (652)
T ss_dssp HHHHTTSC-SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred HHHHhhcC-CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEEEEccCCeeee
Confidence 77765432 222334456899999999999999999999999998766543 33334 688999999999999999
Q ss_pred HHHH-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007257 231 DRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 304 (611)
Q Consensus 231 g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (611)
++.+ ++.++..|+++++++. ++..+++.|+++++|+++++|+++..|.+....
T Consensus 312 g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--------------------- 370 (652)
T 1pg4_A 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK--------------------- 370 (652)
T ss_dssp HHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG---------------------
T ss_pred chHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc---------------------
Confidence 9855 6778999999999863 789999999999999999999999988642110
Q ss_pred HHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC---CceeeccccCCCCCceeeccCC
Q 007257 305 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCGPTTVCFPD 381 (611)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~g~~~~~~~~~ 381 (611)
... ...+++||.+++||+++++++.+++.+.+| +++++.||+||+++.++...+.
T Consensus 371 --------------~~~--------~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~ 428 (652)
T 1pg4_A 371 --------------AIE--------GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPG 428 (652)
T ss_dssp --------------GTT--------TCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTT
T ss_pred --------------ccc--------cCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCC
Confidence 000 112369999999999999999999999888 8999999999999877665443
Q ss_pred -CccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEec--CCcccccCCChHhhhhhc---cCCccccCceEEEc
Q 007257 382 -EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFHTGDIGQIL 455 (611)
Q Consensus 382 -~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~ 455 (611)
.....+++|+|+++++++|+| +++ .+++.|+.|||+|+| |+++.||+++++.+.+.| .+|||+|||+|++|
T Consensus 429 ~~~~~~~s~G~p~~g~~v~i~d-~~g--~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d 505 (652)
T 1pg4_A 429 AIELKAGSATRPFFGVQPALVD-NEG--HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD 505 (652)
T ss_dssp TCCBCTTCCBSBCTTCCEEEEC-TTC--CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEEC
T ss_pred CcCccCCccccCcCCCeEEEEC-CCC--CCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEc
Confidence 234558999999999999998 554 456677899999999 789999999999998877 38999999999999
Q ss_pred cCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHH
Q 007257 456 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFL 532 (611)
Q Consensus 456 ~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~ 532 (611)
+||++++.||.||+||+ +|++|+|.|||++|.+||+|.||+|++.++. +.++|+|+++++..
T Consensus 506 ~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~-------------- 570 (652)
T 1pg4_A 506 EDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE-------------- 570 (652)
T ss_dssp TTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC--------------
T ss_pred CCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC--------------
Confidence 99999999999999998 8999999999999999999999999997654 47999999886420
Q ss_pred HHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 007257 533 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ 601 (611)
Q Consensus 533 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~ 601 (611)
...+ +.++|+++++ +.|+.|++|+.|+++++. |+|++||++|++|++.+.++++.
T Consensus 571 ---~~~~----~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~T~sGKi~R~~L~~~~~~~~~~ 625 (652)
T 1pg4_A 571 ---PSPE----LYAEVRNWVR-KEIGPLATPDVLHWTDSL------PKTRSGKIMRRILRKIAAGDTSN 625 (652)
T ss_dssp ---CCHH----HHHHHHHHHH-HHTCGGGCCSEEEECSCC------CBCTTSCBCHHHHHHHHHTC---
T ss_pred ---CCHH----HHHHHHHHHH-HhCCCCcCCeEEEEcCCC------CCCCCccchHHHHHHHHhCCCCC
Confidence 1122 2345555554 679999999999998765 99999999999999999876543
No 9
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=4.8e-74 Score=617.74 Aligned_cols=486 Identities=23% Similarity=0.309 Sum_probs=395.4
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+++. +. .+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 25 ~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vp 97 (517)
T 3r44_A 25 RATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVP 97 (517)
T ss_dssp HHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred HHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Confidence 57889999999986 31 159999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 161 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (611)
++|.++.+++.+++++++++++|++......+....... .....++.... ...+.+..... ..
T Consensus 98 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~~~~~~~~~~-~~ 160 (517)
T 3r44_A 98 INTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------ADSLAERLRSA-AA 160 (517)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HHHHHHHHHHC-CC
T ss_pred cCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cccHHHHhhcc-Cc
Confidence 999999999999999999999999987655442221111 11111111110 01222222222 12
Q ss_pred CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257 162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241 (611)
Q Consensus 162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~ 241 (611)
........++++++++|||||||.||+|+++|+++.+.+......+ ++..+|++++.+|++|.+++...+.+++.
T Consensus 161 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~~~~ 235 (517)
T 3r44_A 161 DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHVAALTTVIFSAMR 235 (517)
T ss_dssp CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHHHHHHHHHHHHhc
Confidence 2233456789999999999999999999999999999988877766 78899999999999999999876666669
Q ss_pred CceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257 242 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 320 (611)
Q Consensus 242 G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (611)
|+++++.+. ++..+++.++++++|++.++|+++..|.+....
T Consensus 236 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------------- 278 (517)
T 3r44_A 236 GVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF------------------------------------- 278 (517)
T ss_dssp TCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH-------------------------------------
T ss_pred CeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-------------------------------------
Confidence 999999877 999999999999999999999999988653211
Q ss_pred HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC-ccccCccCCCccCeeEE
Q 007257 321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELR 399 (611)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~-~~~~~~~G~~~~~~~v~ 399 (611)
....++++|.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ....+++|+|.++++++
T Consensus 279 --------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 349 (517)
T 3r44_A 279 --------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 349 (517)
T ss_dssp --------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEE
T ss_pred --------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEE
Confidence 11223589999999999999999999887 999999999999998776654432 44558899999999999
Q ss_pred EeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecC
Q 007257 400 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 479 (611)
Q Consensus 400 i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~ 479 (611)
+++ +++. +++.+ .|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.||+||+ +|++|+
T Consensus 350 i~d-~~~~--~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~ 424 (517)
T 3r44_A 350 VRG-DDGV--IREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS-GGENVY 424 (517)
T ss_dssp EEC-TTSC--EESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEE-TTEEEC
T ss_pred EEC-CCCC--CCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEE-CCEEEC
Confidence 998 5543 44445 799999999999999999999999999999999999999999999999999999997 999999
Q ss_pred cHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCC
Q 007257 480 LEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNK 556 (611)
Q Consensus 480 ~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 556 (611)
|.+||++|.+||+|.+|+|++.++.. .++|+++..... . +. ++|+++++ ++
T Consensus 425 p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~---------~--------~~--------~~l~~~l~-~~ 478 (517)
T 3r44_A 425 PAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE---------V--------SE--------QQIVEYCG-TR 478 (517)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT---------C--------CH--------HHHHHHHH-HH
T ss_pred HHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC---------C--------CH--------HHHHHHHH-Hh
Confidence 99999999999999999999876542 566666433211 0 11 23444444 67
Q ss_pred CCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 007257 557 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 599 (611)
Q Consensus 557 l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~ 599 (611)
||.|++|+.|+++++. |+|++||++|++|+++|.+++
T Consensus 479 L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 479 LARYKLPKKVIFAEAI------PRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp SCGGGSCSEEEECSCC------CBCTTCCBCHHHHHHHHGGGC
T ss_pred CCCCCCCCEEEEECCC------CCCCCcCccHHHHHHHHHhhc
Confidence 9999999999998665 999999999999999987654
No 10
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.4e-73 Score=612.93 Aligned_cols=479 Identities=21% Similarity=0.247 Sum_probs=388.9
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+.+. ++. +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 11 ~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vp 83 (504)
T 1t5h_X 11 AATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPAL 83 (504)
T ss_dssp HHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEE
T ss_pred HHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Confidence 57889999999875 211 79999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEE--cchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK 159 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (611)
++|.++.+++.+++++++++++++ +......+.... ...+ ++. ++++.....
T Consensus 84 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~~---------------------~~~~~~~~~ 137 (504)
T 1t5h_X 84 LNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-IIF---------------------LGDLVRDGE 137 (504)
T ss_dssp ECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EEE---------------------GGGTEETTE
T ss_pred cCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eEE---------------------ecchhhcCc
Confidence 999999999999999999999999 665443331111 1111 221 111111100
Q ss_pred ----ccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCC--CCCcEEEEecchhhHHHHH
Q 007257 160 ----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSFLPLAHILDRV 233 (611)
Q Consensus 160 ----~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~~~g~~ 233 (611)
..........++++++++|||||||.||+|.++|+++.+.+......+ ++ ..++++++.+|++|.+++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~p~~~~~g~~ 212 (504)
T 1t5h_X 138 PYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGLMPLYHVVGFF 212 (504)
T ss_dssp ECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEECSCTTSHHHHT
T ss_pred ccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEeecchhhcchHH
Confidence 111111345689999999999999999999999999998887765554 55 7889999999999999985
Q ss_pred H-HHHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcC
Q 007257 234 I-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 311 (611)
Q Consensus 234 ~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (611)
. .+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+......
T Consensus 213 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------- 266 (504)
T 1t5h_X 213 AVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG-------------------------- 266 (504)
T ss_dssp TTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT--------------------------
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc--------------------------
Confidence 4 6778999999999876 99999999999999999999999998875321000
Q ss_pred CCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCC
Q 007257 312 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 391 (611)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~ 391 (611)
. ...+++||.+++||+++++++.+.+.+.++..+++.||+||++. +.... ....+++|.
T Consensus 267 ---------~--------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~---~~~~~~~g~ 325 (504)
T 1t5h_X 267 ---------S--------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR---QPKTGTEMA 325 (504)
T ss_dssp ---------C--------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE---SCSSSSEEB
T ss_pred ---------c--------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc---CCCCCcccc
Confidence 0 01125899999999999999999999999999999999999932 22222 123478899
Q ss_pred CccCeeEEEeecCCCCCCCCCCCCCcEEEEe-cCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeE
Q 007257 392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI 470 (611)
Q Consensus 392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i 470 (611)
|.+++++++++.+++...+++.|+.|||+|+ |++++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.||+|
T Consensus 326 p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~i 405 (504)
T 1t5h_X 326 PGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMI 405 (504)
T ss_dssp CCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred CCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEE
Confidence 9999999999844333467788899999999 899999999999999999999999999999999999999999999999
Q ss_pred EcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHH
Q 007257 471 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 547 (611)
Q Consensus 471 ~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (611)
|+ +|++|+|.+||++|.+||+|.+|+|++.++. +.++|+|+++++. .. + .++
T Consensus 406 k~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~--------~--------~~~ 460 (504)
T 1t5h_X 406 IS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TL--------S--------ADA 460 (504)
T ss_dssp EE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC--------CC--------C--------HHH
T ss_pred EE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc--------Cc--------C--------HHH
Confidence 97 9999999999999999999999999997765 4799999987642 00 1 134
Q ss_pred HHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHH
Q 007257 548 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ 596 (611)
Q Consensus 548 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~ 596 (611)
|.+++++++||.|++|+.|+++++. |+|++||++|++|+++|+
T Consensus 461 l~~~~~~~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 461 LDTFCRSSELADFKRPKRYFILDQL------PKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp HHHHHHTSSCCGGGSCSEEEECSCC------CBCTTSCBCHHHHHHHHC
T ss_pred HHHHHhhccCcccccceEEEEhhhC------CCCCCCCEeHHHHHHHhc
Confidence 5555543389999999999999765 999999999999998874
No 11
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.5e-73 Score=617.97 Aligned_cols=500 Identities=25% Similarity=0.293 Sum_probs=402.6
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++ |++|+++.. ++ +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 35 ~~~~~-~~~A~~~~~--~~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vp 106 (548)
T 2d1s_A 35 RYAKL-GAIAFTNAV--TG-----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAP 106 (548)
T ss_dssp HHHHH-TCEEEEETT--TC-----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEE
T ss_pred hhccc-CCceEEEcC--CC-----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEec
Confidence 45678 999998741 12 68999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 161 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (611)
++|.++.+++.++|+.++++++|+++.....+.... ...+....++.++.... ......|+++.......
T Consensus 107 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 176 (548)
T 2d1s_A 107 TNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQ-KTVTTIKTIVILDSKVD---------YRGYQCLDTFIKRNTPP 176 (548)
T ss_dssp ECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHH-HHSTTCCEEEETTCSSC---------BTTBCBHHHHHHHTSCT
T ss_pred cCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHh-cCCCCCCEEEEeCCccc---------ccccccHHHHHhcCccc
Confidence 999999999999999999999999987655443221 11122344555443210 00123455555432111
Q ss_pred CCcCCCC------CCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHH
Q 007257 162 EMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 235 (611)
Q Consensus 162 ~~~~~~~------~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~ 235 (611)
....... .++++++++|||||||.||+|.+||+++.+.+......+. ..++..+|++++.+|++|.+++...
T Consensus 177 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~ 254 (548)
T 2d1s_A 177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVVPFHHGFGMFTT 254 (548)
T ss_dssp TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECSCTTSHHHHHHH
T ss_pred cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEeccHHHHHHHHHH
Confidence 0111111 2389999999999999999999999999988776654410 1267889999999999999998774
Q ss_pred -HHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCC
Q 007257 236 -EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 313 (611)
Q Consensus 236 -~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (611)
+.++ .|+++++.+. ++..+++.++++++|+++++|+++..|.+..
T Consensus 255 ~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------------- 301 (548)
T 2d1s_A 255 LGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE-------------------------------- 301 (548)
T ss_dssp HHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS--------------------------------
T ss_pred HHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc--------------------------------
Confidence 4456 9999999876 9999999999999999999999999886411
Q ss_pred CCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCCccccCccCCC
Q 007257 314 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV 392 (611)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~ 392 (611)
..+. ..+++||.+++||+++++++.+.+.+.+ ++++++.||+||++..++..... ....+++|+|
T Consensus 302 -----~~~~--------~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~~ 367 (548)
T 2d1s_A 302 -----LLNK--------YDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG-DDKPGASGKV 367 (548)
T ss_dssp -----CGGG--------SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-CCCTTCCBEE
T ss_pred -----cccc--------ccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc-cCCCCCCCcc
Confidence 0111 1225899999999999999999999988 68899999999999877764433 2345899999
Q ss_pred ccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEE
Q 007257 393 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIK 471 (611)
Q Consensus 393 ~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~ 471 (611)
+++++++|+| +++ ..+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+|+
T Consensus 368 ~~~~~~~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik 445 (548)
T 2d1s_A 368 VPLFKAKVID-LDT-KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIK 445 (548)
T ss_dssp CTTCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBC
T ss_pred CCCceEEEEe-CCc-CccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEE
Confidence 9999999998 332 3567788999999999999999999999999999 799999999999999999999999999999
Q ss_pred cCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 007257 472 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL 548 (611)
Q Consensus 472 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 548 (611)
+ +|++|+|.+||++|.+||+|.+|+|++.++. +.++|+|+++++. .. + .++|
T Consensus 446 ~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~--------~~--------~--------~~~l 500 (548)
T 2d1s_A 446 Y-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK--------NM--------T--------EKEV 500 (548)
T ss_dssp B-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------C--------HHHH
T ss_pred E-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC--------CC--------C--------HHHH
Confidence 7 9999999999999999999999999997654 4788999987642 00 1 1234
Q ss_pred HHHHHhCCCCCcceee-eEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 007257 549 KNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL 602 (611)
Q Consensus 549 ~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~ 602 (611)
.++++ ++|+.|++|+ .|+++++. |+|++||++|++|+++|++.|+++
T Consensus 501 ~~~~~-~~l~~~~~p~~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~i~~~ 548 (548)
T 2d1s_A 501 MDYVA-SQVSNAKRLRGGVRFVDEV------PKGLTGKIDGRAIREILKKPVAKM 548 (548)
T ss_dssp HHHHH-TTSCGGGSCTTCEEECSSC------CBCTTSCBCHHHHHHHHHSCC---
T ss_pred HHHHH-HhccccccccccEEEccCC------CCCCcchhHHHHHHHHHhhhhhcC
Confidence 45554 7899999999 89998665 999999999999999998887764
No 12
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=9.2e-73 Score=613.89 Aligned_cols=496 Identities=19% Similarity=0.202 Sum_probs=404.8
Q ss_pred cccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 3 VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 3 a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
|+++||++|+++. ++ .+..+++||+||.++++++|++|.+. |+++||+|+++++|++++++++|||+++|++++|
T Consensus 53 a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vp 128 (570)
T 3c5e_A 53 AGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMP 128 (570)
T ss_dssp TTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEE
T ss_pred ccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence 4459999999986 32 23458999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 161 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (611)
+++.++.+++.++++.++++++|+++.....+.... ...+.++.++.+++... .....++++......
T Consensus 129 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~- 196 (570)
T 3c5e_A 129 GTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIKLLVSEKSC----------DGWLNFKKLLNEAST- 196 (570)
T ss_dssp CCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEEEEESSSCC----------TTSEEHHHHHHHSCS-
T ss_pred cCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEEEEecccCc----------cccccHHHHhhcccc-
Confidence 999999999999999999999999987665543221 12344555665554210 123456665543321
Q ss_pred CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHH-hhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHh
Q 007257 162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFF 239 (611)
Q Consensus 162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l 239 (611)
........++++++|+|||||||.||+|+++|+.+.. ..... ..+ ++..+|++++..|++|.+++.. ++.++
T Consensus 197 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~-----~~~~~d~~~~~~p~~~~~~~~~~~~~~l 270 (570)
T 3c5e_A 197 THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWT-----GLQASDIMWTISDTGWILNILCSLMEPW 270 (570)
T ss_dssp CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTT-----SCCTTCEEEECCCTTSHHHHHHTTHHHH
T ss_pred cccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhc-----CCCCCceEEEcCchHHHHHHHHHHHHHH
Confidence 1222345789999999999999999999999994332 33332 333 6788999999999999999874 67789
Q ss_pred hcCceEEEec---CChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257 240 RRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA 316 (611)
Q Consensus 240 ~~G~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (611)
..|+++++.+ .++..+++.++++++|+++++|+++..|.+..
T Consensus 271 ~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------------------------- 315 (570)
T 3c5e_A 271 ALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD----------------------------------- 315 (570)
T ss_dssp HHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-----------------------------------
T ss_pred HhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-----------------------------------
Confidence 9999999985 39999999999999999999999999886410
Q ss_pred chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCe
Q 007257 317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS 396 (611)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~ 396 (611)
. ....+++||.+++||+++++++.+.|.+.+|+++++.||+||++..++.... .....+++|.|++++
T Consensus 316 ---~--------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~ 383 (570)
T 3c5e_A 316 ---L--------SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKT-MKIKPGYMGTAASCY 383 (570)
T ss_dssp ---T--------TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTT-SCCCTTCCCEECTTC
T ss_pred ---c--------cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcc-cccCCCcccccCCCc
Confidence 0 0012358999999999999999999999889999999999999966554432 233458999999999
Q ss_pred eEEEeecCCCCCCCCCCCCCcEEEEe-----cCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEE
Q 007257 397 ELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 471 (611)
Q Consensus 397 ~v~i~~~~~~~~~~~~~~~~Gel~v~-----~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~ 471 (611)
+++|+| +++ .+++.|+.|||+|+ |++++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.||+|+
T Consensus 384 ~v~i~d-~~g--~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik 460 (570)
T 3c5e_A 384 DVQIID-DKG--NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIIN 460 (570)
T ss_dssp CEEEEC-TTS--CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEE
T ss_pred eEEEEC-CCC--CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEE
Confidence 999998 554 56778899999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 007257 472 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL 548 (611)
Q Consensus 472 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 548 (611)
+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++... . ..+.+.++|
T Consensus 461 ~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~----------------~---~~~~~~~~l 520 (570)
T 3c5e_A 461 S-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS----------------H---DPEQLTKEL 520 (570)
T ss_dssp E-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTT----------------S---CHHHHHHHH
T ss_pred E-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccC----------------c---chHHHHHHH
Confidence 7 9999999999999999999999999997654 478899998765310 0 012234456
Q ss_pred HHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257 549 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 597 (611)
Q Consensus 549 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~ 597 (611)
+++++ ..||.|++|+.|+++++. |+|++||++|++|++.+.+
T Consensus 521 ~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 521 QQHVK-SVTAPYKYPRKIEFVLNL------PKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp HHHHH-HHSCGGGSCSEEEEESCC------CBCTTCCBCHHHHHHHHTC
T ss_pred HHHHH-hhCccccCCcEEEEeccC------CCCCCcCCcHHHHHHHHHh
Confidence 66664 679999999999999765 9999999999999988744
No 13
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=4e-74 Score=623.47 Aligned_cols=507 Identities=24% Similarity=0.269 Sum_probs=320.7
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|++... ++.. .+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 29 ~a~~~p~~~a~~a~~--~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 104 (550)
T 3rix_A 29 AMKRYALVPGTIAFT--DAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAP 104 (550)
T ss_dssp HHHHHHTSTTCEEEE--ETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEE
T ss_pred HHHhCCCCceEEEee--ecCC--CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEee
Confidence 578899999987321 2111 169999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 161 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (611)
++|.++.+++.++++.++++++|+++.....+.... ...+....++.++.... .....++.++.......
T Consensus 105 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 174 (550)
T 3rix_A 105 ANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD---------YQGFQSMYTFVTSHLPP 174 (550)
T ss_dssp CCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC---------BTTBCBHHHHHHHHCCT
T ss_pred cCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHH-hhCCCcceEEEEcCCcc---------ccCcccHHHHhhccccc
Confidence 999999999999999999999999988766553322 22345566666554321 11244555555433221
Q ss_pred C------CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHH
Q 007257 162 E------MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 235 (611)
Q Consensus 162 ~------~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~ 235 (611)
. .......++++++++|||||||.||+|+++|+++...+......+ ...++..++++++.+|++|.+++...
T Consensus 175 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~p~~~~~g~~~~ 252 (550)
T 3rix_A 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTAILSVVPFHHGFGMFTT 252 (550)
T ss_dssp TCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCEEEECSCTTSHHHHHHH
T ss_pred cccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcEEEEechHHHHHHHHHH
Confidence 1 111222457899999999999999999999999988876654431 11257789999999999999999888
Q ss_pred HHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCC
Q 007257 236 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 314 (611)
Q Consensus 236 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (611)
+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+..
T Consensus 253 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------------------------- 299 (550)
T 3rix_A 253 LGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST--------------------------------- 299 (550)
T ss_dssp HHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC---------------------------------
T ss_pred HHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc---------------------------------
Confidence 888999999999876 9999999999999999999999999886521
Q ss_pred CcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCc-eeeccccCCCCCceeeccCCCccccCccCCCc
Q 007257 315 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 393 (611)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~-v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~ 393 (611)
..+.. .+++||.+++||+++++++.+++.+.++.. +++.||+||+++.++...... ...+++|.|+
T Consensus 300 ----~~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~~~ 366 (550)
T 3rix_A 300 ----LIDKY--------DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD-DKPGAVGKVV 366 (550)
T ss_dssp ----GGGGS--------CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTC-CCTTEEEEEC
T ss_pred ----ccccc--------CcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCC-CCCCCccccc
Confidence 11111 235899999999999999999999999875 999999999998877766544 3458999999
Q ss_pred cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEc
Q 007257 394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 472 (611)
Q Consensus 394 ~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~ 472 (611)
++++++|+| +++ ..+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+|++
T Consensus 367 ~~~~~~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~ 444 (550)
T 3rix_A 367 PFFEAKVVD-LDT-GKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY 444 (550)
T ss_dssp TTCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC---------
T ss_pred CCcEEEEEe-CCC-CcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEE
Confidence 999999998 433 3677888999999999999999999999999999 7999999999999999999999999999997
Q ss_pred CCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHH
Q 007257 473 SQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK 549 (611)
Q Consensus 473 ~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 549 (611)
+|++|+|.+||++|.+||+|.+|+|++.++. +.++|+|++.++... + .++|.
T Consensus 445 -~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~----------------~--------~~~l~ 499 (550)
T 3rix_A 445 -KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM----------------T--------EKEIV 499 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCC----------------C--------HHHHH
Confidence 9999999999999999999999999997755 378888887764310 1 12333
Q ss_pred HHHHhCCCCCcceee-eEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHh
Q 007257 550 NAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYE 604 (611)
Q Consensus 550 ~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~ 604 (611)
++++ .+|+.++.|. .++++++. |+|++||++|++|++++.+..+.-+.
T Consensus 500 ~~~~-~~l~~~~~~~~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~~~~~~~ 548 (550)
T 3rix_A 500 DYVA-SQVTTAKKLRGGVVFVDEV------PKGLTGKLDARKIREILIKAKKGGKS 548 (550)
T ss_dssp --------------------------------------------------------
T ss_pred HHHH-HhcccccccCCceEEEeec------CCCCCcceeHHHHHHHHHhhcccccc
Confidence 4443 6688776555 58777654 99999999999999999876655443
No 14
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.2e-73 Score=630.33 Aligned_cols=521 Identities=18% Similarity=0.192 Sum_probs=406.5
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV 80 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~ 80 (611)
+|+++||++|+++. ++..+..+++||+||.++++++|++|+ +.|+++||+|+++++|++++++++|||+++|++++
T Consensus 91 ~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~v 167 (663)
T 1ry2_A 91 HALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHS 167 (663)
T ss_dssp HHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEE
T ss_pred HhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEE
Confidence 56789999999986 333455689999999999999999999 89999999999999999999999999999999999
Q ss_pred eCCCCCChhHHHHHHhhcCccEEEEcchhHH--------HHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHH
Q 007257 81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVK--------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 152 (611)
Q Consensus 81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (611)
|+++.++.+++.++|++++|+++|+++.... ..........+.++.+++++...... ..........|.
T Consensus 168 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---~~~~~~~~~~~~ 244 (663)
T 1ry2_A 168 VVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---VAFHAPRDLDWA 244 (663)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---CCCCSSSEEEHH
T ss_pred eeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc---cccCCCccccHH
Confidence 9999999999999999999999999876421 11111111223455666665321000 000011235677
Q ss_pred HHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhh-cccccccccCCCCCCcEEEEecchhhHHH
Q 007257 153 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHILD 231 (611)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 231 (611)
++..... ......+..++++++|+|||||||.||||+++|.+++..+.. ....+ ++..+|++++..|++|..+
T Consensus 245 ~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~g 318 (663)
T 1ry2_A 245 TEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFFTAGDIGWITG 318 (663)
T ss_dssp HHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEEECSCTTSHHH
T ss_pred HHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEEEEcCCcHHhhh
Confidence 7665332 222334557899999999999999999999999998766543 33334 6888999999999999999
Q ss_pred HHH-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007257 232 RVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 305 (611)
Q Consensus 232 ~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (611)
+.+ ++.++..|+++++++. ++..+++.|+++++|+++++|++++.|.+...
T Consensus 319 ~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~----------------------- 375 (663)
T 1ry2_A 319 HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD----------------------- 375 (663)
T ss_dssp HHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT-----------------------
T ss_pred hHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc-----------------------
Confidence 855 6778999999999863 78999999999999999999999988753110
Q ss_pred HHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC---CceeeccccCCCCCceeeccC--
Q 007257 306 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCGPTTVCFP-- 380 (611)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~g~~~~~~~~-- 380 (611)
...+. ..+++||.+++||+++++++.+++.+.+| +++++.||+||+++.++...+
T Consensus 376 ------------~~~~~--------~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~ 435 (663)
T 1ry2_A 376 ------------SYIEN--------HSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG 435 (663)
T ss_dssp ------------TSSSS--------CCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT
T ss_pred ------------ccccc--------CCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCC
Confidence 00001 12359999999999999999999999887 899999999999987766544
Q ss_pred CCccccCccCCCccCeeEEEeecC-CCCCCCCCC-CCCcEEEEec--CCcccccCCChHhhhhhc---cCCccccCceEE
Q 007257 381 DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDD-PPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFHTGDIGQ 453 (611)
Q Consensus 381 ~~~~~~~~~G~~~~~~~v~i~~~~-~~~~~~~~~-~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~ 453 (611)
.....++++|.|+++++++|+| + ++ .+++. |+.|||+|+| |+++.|||++++.+.+.| .+|||+|||+|+
T Consensus 436 ~~~~~~gs~G~p~~g~~v~i~d-~~~g--~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~ 512 (663)
T 1ry2_A 436 VTPMKPGSASFPFFGIDAVVLD-PNTG--EELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAA 512 (663)
T ss_dssp CCCCCTTCCCEECTTCCEEEEC-SSST--TCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEE
T ss_pred CcccCCCccccCcCCCeEEEEc-CCCC--CcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEE
Confidence 2234568999999999999998 5 43 34444 7899999999 589999999999998887 379999999999
Q ss_pred EccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCc
Q 007257 454 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS 530 (611)
Q Consensus 454 ~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~ 530 (611)
+|+||++++.||.||+||+ +|++|+|.+||++|.+||+|.||+|++.++. +.++|+|+++++.... ..
T Consensus 513 ~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~-----~~--- 583 (663)
T 1ry2_A 513 KDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWS-----TA--- 583 (663)
T ss_dssp ECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC----------------
T ss_pred EcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccc-----cc---
Confidence 9999999999999999997 8999999999999999999999999998754 4799999998753100 00
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 007257 531 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL 602 (611)
Q Consensus 531 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~ 602 (611)
.+. ..+.+.++|+++++ +.|+.|++|+.|+++++. |+|++||++|++|++.+.++++.+
T Consensus 584 -----~~~-~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~T~sGKi~R~~L~~~~~~~~~~~ 642 (663)
T 1ry2_A 584 -----TDD-ELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDL------PKTRSGKIMRRILRKILAGESDQL 642 (663)
T ss_dssp ----------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCC------CBCTTSCBCHHHHHHSCC------
T ss_pred -----cch-hHHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCC------CCCCccCchHHHHHHHHcCCCCCC
Confidence 000 00023445566665 679999999999998765 999999999999999987765443
No 15
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2.2e-73 Score=612.31 Aligned_cols=481 Identities=22% Similarity=0.276 Sum_probs=315.7
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 15 ~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vp 85 (509)
T 3ivr_A 15 NAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLP 85 (509)
T ss_dssp HHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEe
Confidence 57889999999986 3 79999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 161 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (611)
++|.++.+++.+++++++++++|++......+.... ...+....++.+++.. ..+.++.......
T Consensus 86 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 150 (509)
T 3ivr_A 86 VNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGS--------------GPFAPFKDLASDT 150 (509)
T ss_dssp CCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCC--------------SSCEEGGGTCCCS
T ss_pred cCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCC--------------cChhhHhhccCCC
Confidence 999999999999999999999999988766533322 2334555666655421 1122222212122
Q ss_pred CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257 162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241 (611)
Q Consensus 162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~ 241 (611)
........++++++++|||||||.||+|.++|+++.+.+......+ ++..+|++++.+|++|.+++...+.++..
T Consensus 151 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~~~~~~~~~~ 225 (509)
T 3ivr_A 151 PFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVTGLGLMLTLQQA 225 (509)
T ss_dssp CCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred CCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchhHHHHHHHHHHh
Confidence 3334456789999999999999999999999999999988877766 78899999999999999999887765544
Q ss_pred -CceEEEecCChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257 242 -GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 320 (611)
Q Consensus 242 -G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (611)
|+++++...++..+++.++++++|+++++|+++..+++...
T Consensus 226 ~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-------------------------------------- 267 (509)
T 3ivr_A 226 GGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA-------------------------------------- 267 (509)
T ss_dssp TCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC--------------------------------------
T ss_pred CCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc--------------------------------------
Confidence 55555444499999999999999999999999999875320
Q ss_pred HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEE
Q 007257 321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR 399 (611)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~ 399 (611)
...+++++.++.+|++ +..+.+.+.+ ++++++.||+||++++++....... ..++|+|+++++++
T Consensus 268 ---------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~~G~p~~~~~~~ 333 (509)
T 3ivr_A 268 ---------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKSAGRPLFWRTVA 333 (509)
T ss_dssp ---------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTSCCEECTTCEEE
T ss_pred ---------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCcccccCCCcEEE
Confidence 0111489999999987 8888888888 9999999999999987776554322 24589999999999
Q ss_pred EeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEecc--CCeEEcCCcee
Q 007257 400 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK--KNLIKISQGEY 477 (611)
Q Consensus 400 i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~--~d~i~~~~G~~ 477 (611)
++| +++ .+++.|+.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++++||++++.||. +|+||+ +|++
T Consensus 334 i~d-~~~--~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~G~~ 409 (509)
T 3ivr_A 334 VVD-AED--RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT-GGEN 409 (509)
T ss_dssp EEC-TTS--CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-------------
T ss_pred EEC-CCC--CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEE-CCEE
Confidence 998 554 5677889999999999999999999999999999999999999999999999999999 999996 9999
Q ss_pred cCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 007257 478 VALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER 554 (611)
Q Consensus 478 v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 554 (611)
|+|.+||++|.+||+|.+|+|++.++. +.++|++++.++... + .++|++++ +
T Consensus 410 v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~----------------~--------~~~l~~~l-~ 464 (509)
T 3ivr_A 410 VYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESI----------------A--------ADALAEFV-A 464 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCC----------------C--------HHHHHHHH-H
Confidence 999999999999999999999997755 368888887764210 1 12344444 3
Q ss_pred CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257 555 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 598 (611)
Q Consensus 555 ~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 598 (611)
+.||.|++|+.|+++++. |+|++||++|++|++++++.
T Consensus 465 ~~L~~~~~P~~i~~v~~l------P~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 465 SLIARYKKPKHVVFVEAL------PKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp --------------------------------------------
T ss_pred hhCcccCCCcEEEEecCC------CCCCCCCccHHHHHHHHhhc
Confidence 789999999999998664 99999999999999998663
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.1e-72 Score=604.76 Aligned_cols=477 Identities=18% Similarity=0.217 Sum_probs=398.1
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICV 80 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~ 80 (611)
+|+++||++|+++. + +++||+||.++++++|++|.+. |+++|++|+++++|++++++++|||+++|++++
T Consensus 10 ~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 10 HAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp HHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred HHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 57899999999986 3 7999999999999999999886 888999999999999999999999999999999
Q ss_pred eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257 81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 160 (611)
Q Consensus 81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (611)
|+++.++.+++.++++.++++++|+++......... ......+.++......
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~ 132 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQ----------------------------QIQTVSAEELLENEGG 132 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCC----------------------------SSCEEEHHHHHTSCSC
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccchhccc----------------------------ccceecHhhhhccccC
Confidence 999999999999999999999999975432111000 0123344555443333
Q ss_pred cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhh
Q 007257 161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240 (611)
Q Consensus 161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~ 240 (611)
.........++++++++|||||||.||+|+++|+++.+.+......+ ++..++++++..|++|.+++...+.++.
T Consensus 133 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~ 207 (511)
T 3e7w_A 133 SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLSVMDLYPCLQ 207 (511)
T ss_dssp CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHHHHHHHHHHH
T ss_pred CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHHHHHHHHHHh
Confidence 33333445788999999999999999999999999999888877666 7889999999999999999888888899
Q ss_pred cCceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257 241 RGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA 316 (611)
Q Consensus 241 ~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (611)
.|+++++.+. ++..+++.++++++|+++++|+++..+.....
T Consensus 208 ~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------------- 253 (511)
T 3e7w_A 208 SGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG---------------------------------- 253 (511)
T ss_dssp TTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT----------------------------------
T ss_pred cCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc----------------------------------
Confidence 9999999864 88999999999999999999999988754110
Q ss_pred chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC----ccccCccCC
Q 007257 317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGP 391 (611)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~----~~~~~~~G~ 391 (611)
. ....++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++...... .....++|.
T Consensus 254 ---~--------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 322 (511)
T 3e7w_A 254 ---F--------SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGF 322 (511)
T ss_dssp ---C--------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE
T ss_pred ---c--------ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcc
Confidence 0 011235899999999999999999999998 899999999999998776543321 122367899
Q ss_pred CccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc--cCC--ccccCceEEEccCCeEEEEeccC
Q 007257 392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNGVVKIIDRKK 467 (611)
Q Consensus 392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~--~~g--~~~TGD~~~~~~dG~l~~~GR~~ 467 (611)
|+++++++|+| +++ .+++.|+.|||+|+||+++.||+++++.+.+.| .+| ||+|||+|++ +||++++.||.|
T Consensus 323 ~~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~ 398 (511)
T 3e7w_A 323 AKPDMNIFIMD-EEG--QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLD 398 (511)
T ss_dssp ECTTCEEEEEC-TTS--CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESS
T ss_pred eeCCCEEEEEC-CCC--CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEcccc
Confidence 99999999998 554 567788999999999999999999999999999 344 8999999999 599999999999
Q ss_pred CeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 007257 468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI 544 (611)
Q Consensus 468 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (611)
|+|++ +|++|+|.+||++|.+||+|.+|+|++.++. +.++|+|++.++... .. ..+
T Consensus 399 d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~----------------~~----~~~ 457 (511)
T 3e7w_A 399 FQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFE----------------KE----FQL 457 (511)
T ss_dssp SEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCS----------------SH----HHH
T ss_pred CEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEecccccc----------------ch----hhH
Confidence 99998 9999999999999999999999999987644 479999998764200 11 123
Q ss_pred HHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257 545 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 597 (611)
Q Consensus 545 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~ 597 (611)
.+.|+++++ ++||.|++|+.++++++. |+|++||++|++|++.+.+
T Consensus 458 ~~~l~~~l~-~~L~~~~~P~~~~~v~~l------P~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 458 TSAIKKELA-ASLPAYMIPRKFIYQDHI------QMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp HHHHHHHHH-HHSCGGGSCSEEEECSCC------CBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHHHHH-hhCchhhCCeeEEEeccC------CCCCCcCccHHHHHhHHhh
Confidence 345556654 679999999999998665 9999999999999998865
No 17
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=8e-73 Score=608.47 Aligned_cols=479 Identities=19% Similarity=0.208 Sum_probs=392.3
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 10 ~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 10 WAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp HHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 57889999999986 3 79999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhc-ccc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL-GKV 160 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 160 (611)
+++.++.+++.++++.+++++++++....... .. ..++..+ .+..+... ...
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~-~~~~~~~------------------~~~~~~~~~~~~ 133 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LP-VRIVSED------------------NLKDIFFTHKGN 133 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CS-SEEEETH------------------HHHHHHHHTTTC
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------cc-cceechh------------------hhhhhccccccc
Confidence 99999999999999999999999975422110 00 0111100 11111111 111
Q ss_pred cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhh
Q 007257 161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240 (611)
Q Consensus 161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~ 240 (611)
.........++++++++|||||||.||+|+++|.++.+.+......+ ++..+|++++.+|++|.+++...+.+++
T Consensus 134 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~ 208 (512)
T 3fce_A 134 TPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLSVMDIYPSLV 208 (512)
T ss_dssp CCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGGHHHHHHHHH
T ss_pred CCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHHHHHHHHHHh
Confidence 22223345789999999999999999999999999999888877666 7889999999999999999888888999
Q ss_pred cCceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257 241 RGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA 316 (611)
Q Consensus 241 ~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (611)
.|+++++.+. ++..+++.++++++|+++++|+++..++....
T Consensus 209 ~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------------- 254 (512)
T 3fce_A 209 TGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS---------------------------------- 254 (512)
T ss_dssp TTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT----------------------------------
T ss_pred CCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc----------------------------------
Confidence 9999999874 89999999999999999999999988753110
Q ss_pred chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC----ccccCccCC
Q 007257 317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGP 391 (611)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~----~~~~~~~G~ 391 (611)
.. ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++...... .....++|.
T Consensus 255 ---~~--------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 323 (512)
T 3fce_A 255 ---FS--------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY 323 (512)
T ss_dssp ---CS--------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEE
T ss_pred ---cc--------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCcccc
Confidence 00 11235899999999999999999999988 899999999999998776554332 123467899
Q ss_pred CccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc----CCccccCceEEEccCCeEEEEeccC
Q 007257 392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNGVVKIIDRKK 467 (611)
Q Consensus 392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~g~~~TGD~~~~~~dG~l~~~GR~~ 467 (611)
|.++++++++| +++ .+++.|+.|||+|+||+++.||+++++.+.+.|. +|||+|||+|++ +||++++.||.|
T Consensus 324 ~~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~ 399 (512)
T 3fce_A 324 CKSDCRLLIMK-EDG--TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLD 399 (512)
T ss_dssp ECTTCEEEEEC-SSS--CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGG
T ss_pred ccCCcEEEEEC-CCC--CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccC
Confidence 99999999998 554 4667788999999999999999999999999983 469999999999 799999999999
Q ss_pred CeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 007257 468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI 544 (611)
Q Consensus 468 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (611)
|+|++ +|++|+|.+||++|.+||+|.+|+|++.++. +.++|+|+++++.. . . ...+
T Consensus 400 d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------~----~~~~ 458 (512)
T 3fce_A 400 FQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF----------E------K----EFKL 458 (512)
T ss_dssp GCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCC----------S------S----HHHH
T ss_pred CEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccc----------c------c----hhhh
Confidence 99998 9999999999999999999999999986544 37899999876420 0 1 1123
Q ss_pred HHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257 545 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 598 (611)
Q Consensus 545 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 598 (611)
.+.|+++++ ++||.|++|+.++++++. |+|++||++|++|++.++++
T Consensus 459 ~~~l~~~l~-~~L~~~~~P~~~~~~~~l------P~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 459 TSAIKKELN-ERLPNYMIPRKFMYQSSI------PMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp HHHHHHHHH-TTSCGGGSCSEEEECSCC------CBCTTSSBCHHHHHHHHHC-
T ss_pred HHHHHHHHH-hhCchhcCCeEEEEeccc------CCCCCcChHHHHHHhhhhhc
Confidence 345666665 789999999999998665 99999999999999998763
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2e-71 Score=609.98 Aligned_cols=488 Identities=18% Similarity=0.186 Sum_probs=401.3
Q ss_pred CCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCC
Q 007257 7 PGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTL 86 (611)
Q Consensus 7 pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~ 86 (611)
||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|++|.+
T Consensus 39 pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~ 109 (617)
T 3rg2_A 39 SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSH 109 (617)
T ss_dssp CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTC
T ss_pred CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCccc
Confidence 999999986 3 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhhcCccEEEEcchhHH----HHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccccC
Q 007257 87 GPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 162 (611)
Q Consensus 87 ~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (611)
+.+++.++++++++++++++..... ..........+....+....+... ..+.+..... ...
T Consensus 110 ~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~ 175 (617)
T 3rg2_A 110 QRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE-------------HNLQDAINHP-AED 175 (617)
T ss_dssp CHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-------------TBHHHHHHSC-CSS
T ss_pred cHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-------------cchhhhhccc-ccc
Confidence 9999999999999999999876531 111111112233444444443221 1223332222 122
Q ss_pred CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH--HHHHhh
Q 007257 163 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI--EEYFFR 240 (611)
Q Consensus 163 ~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~--~~~~l~ 240 (611)
....+..++++++++|||||||.||||+++|+++.+.+......+ ++..++++++.+|++|.+++.. .+.++.
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~ 250 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAAHNYAMSSPGSLGVFL 250 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccchhhhhhhHHHHHHHHH
Confidence 233455789999999999999999999999999999988877776 7889999999999999999875 677899
Q ss_pred cCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257 241 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL 319 (611)
Q Consensus 241 ~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (611)
.|+++++.+. ++..++..++++++|++.++|+++..+.+.......
T Consensus 251 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------------------- 297 (617)
T 3rg2_A 251 AGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES--------------------------------- 297 (617)
T ss_dssp HTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC---------------------------------
T ss_pred cCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc---------------------------------
Confidence 9999999876 899999999999999999999999988764321100
Q ss_pred HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCc-cCeeE
Q 007257 320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS-VYSEL 398 (611)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~-~~~~v 398 (611)
...+++||.+++||+++++++.+.+.+.+|++++|.||+||++..+............++|.|+ ++.++
T Consensus 298 ----------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 367 (617)
T 3rg2_A 298 ----------RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEV 367 (617)
T ss_dssp ----------TTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEE
T ss_pred ----------cccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceE
Confidence 0012589999999999999999999999999999999999998655443333233346788887 78899
Q ss_pred EEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcCCcee
Q 007257 399 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY 477 (611)
Q Consensus 399 ~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~ 477 (611)
+++| +++ .+++.|+.|||+|+|++++.||+++++.|.+.| .+|||+|||+|++++||.+++.||.||+||+ +|++
T Consensus 368 ~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki-~G~r 443 (617)
T 3rg2_A 368 WVAD-AEG--NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINR-GGEK 443 (617)
T ss_dssp EEEC-TTS--CBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEE-TTEE
T ss_pred EEEC-CCC--CCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEE-CCEE
Confidence 9998 554 567788999999999999999999999999999 7899999999999999999999999999997 9999
Q ss_pred cCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 007257 478 VALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER 554 (611)
Q Consensus 478 v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 554 (611)
|+|.+||++|.+||+|.+|+|++.++. +.++|++++.+.. +. .++++++++
T Consensus 444 i~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------~~--------~~l~~~l~~ 497 (617)
T 3rg2_A 444 IAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL------------------RA--------VQVRRFLRE 497 (617)
T ss_dssp EEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CH--------HHHHHHHHT
T ss_pred eCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC------------------CH--------HHHHHHHHh
Confidence 999999999999999999999986543 4788888877532 21 234455543
Q ss_pred CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 007257 555 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ 601 (611)
Q Consensus 555 ~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~ 601 (611)
..||.|++|..++++++. |+|++||++|++|++.+......
T Consensus 498 ~~lp~~~vP~~~~~v~~l------P~t~~GKidR~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 498 QGIAEFKLPDRVECVDSL------PLTAVGKVDKKQLRQWLASRASA 538 (617)
T ss_dssp TTCCGGGSCSEEEECSCC------CBCTTSSBCHHHHHHHHHHHHHH
T ss_pred CCCccccCCcEEEEeccc------CCCCCCCCcHHHHHHHHhccccc
Confidence 479999999999998665 99999999999999998776544
No 19
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.9e-71 Score=600.21 Aligned_cols=489 Identities=21% Similarity=0.229 Sum_probs=387.5
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+ +||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 33 ~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vp 102 (529)
T 2v7b_A 33 NET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVV 102 (529)
T ss_dssp TGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEE
T ss_pred hhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEe
Confidence 466 9999999975 2 68999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCc-cEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 160 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (611)
+++.++.+++.+++++++++++|+++.....+..... ..+.. ..++..+..... ......++++.....
T Consensus 103 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 172 (529)
T 2v7b_A 103 ANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRESE--------PRLAPLFEELIDAAA- 172 (529)
T ss_dssp CCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------CCCBHHHHHHTSC-
T ss_pred cCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEecccccc--------cccccchhhhhccCC-
Confidence 9999999999999999999999999876554322211 11122 344443332110 001224555554221
Q ss_pred cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhH-HHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHH
Q 007257 161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYF 238 (611)
Q Consensus 161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~ 238 (611)
.........++++++++|||||||.||+|+++|+++ ..........+ ++..+|++++..|++|.+++.. .+.+
T Consensus 173 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~ 247 (529)
T 2v7b_A 173 PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLFFAYGLGNGLTFP 247 (529)
T ss_dssp CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTTSHHHHHHHTHHH
T ss_pred CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHHHHHHHHHHHHHH
Confidence 122233457899999999999999999999999999 56555544444 6788999999999999999876 5568
Q ss_pred hhcCceEEEec-C-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257 239 FRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA 316 (611)
Q Consensus 239 l~~G~~~~~~~-~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (611)
+..|+++++.+ . ++..+++.++++++|+++++|+++..+..... .
T Consensus 248 l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~---------------------------- 294 (529)
T 2v7b_A 248 LSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-----L---------------------------- 294 (529)
T ss_dssp HHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----C----------------------------
T ss_pred HhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----c----------------------------
Confidence 99999999873 3 89999999999999999999999988754110 0
Q ss_pred chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCe
Q 007257 317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS 396 (611)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~ 396 (611)
.. ....++|.+++||+++++++.+.+.+.+|+++++.||+||++.+........ ...+++|.|++++
T Consensus 295 ~~------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~ 361 (529)
T 2v7b_A 295 PA------------RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-VEYGTTGRPVPGY 361 (529)
T ss_dssp CC------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-CCTTSCCEECTTC
T ss_pred cc------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-CccCCcccCCCCC
Confidence 00 0003799999999999999999999989999999999999987766654443 3448899999999
Q ss_pred eEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCce
Q 007257 397 ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 476 (611)
Q Consensus 397 ~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~ 476 (611)
+++|+| +++ .+++.|+.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++++||++++.||.||+||+ +|+
T Consensus 362 ~~~i~d-~~g--~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~ 437 (529)
T 2v7b_A 362 EIELRD-EAG--HAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKV-SGQ 437 (529)
T ss_dssp EEEEEC-TTS--CBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC-----
T ss_pred EEEEEC-CCC--CCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEE-CCE
Confidence 999998 554 4667889999999999999999999999999999999999999999999999999999999997 999
Q ss_pred ecCcHHHHHHHhcCcCcceEEEEecCC--CCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 007257 477 YVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER 554 (611)
Q Consensus 477 ~v~~~~iE~~l~~~p~V~~~~v~~~~~--~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 554 (611)
+|+|.+||++|.+||+|.+|+|++... .+.++|+|++.++.. .... +.++|+++++
T Consensus 438 ~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~-----------------~~~~----~~~~l~~~l~- 495 (529)
T 2v7b_A 438 YVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFA-----------------PSEI----LAEELKAFVK- 495 (529)
T ss_dssp CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHH----HHHHHHHHHH-
T ss_pred EECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCC-----------------cchh----HHHHHHHHHH-
Confidence 999999999999999999999999732 247889999876420 0111 2235566665
Q ss_pred CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHH
Q 007257 555 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 593 (611)
Q Consensus 555 ~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~ 593 (611)
++||.|++|+.++++++. |+|++||++|++|++
T Consensus 496 ~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 496 DRLAPHKYPRDIVFVDDL------PKTATGKIQRFKLRE 528 (529)
T ss_dssp TTSCTTTSCSEEEEESCC------CBCTTSCBCHHHHHC
T ss_pred hhcchhhCCeEEEEeccC------CCCCccchhHHhHhh
Confidence 789999999999999765 999999999999975
No 20
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=5.7e-72 Score=611.71 Aligned_cols=465 Identities=18% Similarity=0.152 Sum_probs=376.2
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 36 ~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vp 106 (620)
T 4dg8_A 36 MAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLY 106 (620)
T ss_dssp HHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 57889999999987 3 79999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 161 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (611)
++|.++.+++.++++++++++++++....... .....+ .+... .....
T Consensus 107 ld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~----------------------~~~~~--~~~~~ 154 (620)
T 4dg8_A 107 IDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV----------------------PVRHL--PAAPA 154 (620)
T ss_dssp CCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE----------------------EGGGC--CCCCC
T ss_pred eCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee----------------------eeccC--CcCCc
Confidence 99999999999999999999999765432211 000000 00000 00011
Q ss_pred CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257 162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241 (611)
Q Consensus 162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~ 241 (611)
........++++++++|||||||.||||+++|+++.+.+.. ...+ ++..++++++..|++|..++...+.++..
T Consensus 155 ~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~~ 228 (620)
T 4dg8_A 155 SVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAATLEIWGALLN 228 (620)
T ss_dssp CSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHHHHHHHHHHTT
T ss_pred cccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHHHHHHHHHHhc
Confidence 11223346899999999999999999999999999887765 3333 68889999999999999999888889999
Q ss_pred CceEEEecC---ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 007257 242 GASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 318 (611)
Q Consensus 242 G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (611)
|+++++.+. ++..+++.++++++|+++++|+++..+.+...
T Consensus 229 G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------------------ 272 (620)
T 4dg8_A 229 GGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------------------ 272 (620)
T ss_dssp TCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------------------------------------
T ss_pred CCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh------------------------------------
Confidence 999999753 89999999999999999999999988864210
Q ss_pred HHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC---ccccCccCCCcc
Q 007257 319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MCMVGTAGPVSV 394 (611)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~---~~~~~~~G~~~~ 394 (611)
..+++||.+++||++++++..+.+.+.+ +++++|.||+||++.+++...... .....++|+|++
T Consensus 273 ------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~ 340 (620)
T 4dg8_A 273 ------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIA 340 (620)
T ss_dssp ------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECT
T ss_pred ------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceeccc
Confidence 0124899999999999988888877665 899999999999998766543322 233468999999
Q ss_pred CeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccC--------CccccCceEEEccCCeEEEEecc
Q 007257 395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQILPNGVVKIIDRK 466 (611)
Q Consensus 395 ~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------g~~~TGD~~~~~~dG~l~~~GR~ 466 (611)
+++++|+| +++. ..++.|+.|||+|+|++++.||+++++.|.+.|.+ +||+|||+|++++||++++.||.
T Consensus 341 ~~~~~i~d-~~~~-~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~ 418 (620)
T 4dg8_A 341 GTAVLLLD-EHGQ-EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRG 418 (620)
T ss_dssp TEEEEEEC-TTSC-BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECS
T ss_pred CcEEEEEC-ccCC-CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccC
Confidence 99999998 5544 34567889999999999999999999999999943 79999999999999999999999
Q ss_pred CCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCCC--eEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 007257 467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS--MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI 544 (611)
Q Consensus 467 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~--~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (611)
||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.. .++++++...+. + .+
T Consensus 419 dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~-------------~---------~~-- 473 (620)
T 4dg8_A 419 DGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA-------------S---------PQ-- 473 (620)
T ss_dssp SSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-------------C---------CH--
T ss_pred CCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH-------------H---------HH--
Confidence 999998 99999999999999999999999999866543 455555543211 0 01
Q ss_pred HHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 007257 545 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ 601 (611)
Q Consensus 545 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~ 601 (611)
.+ .+.||.|++|+.+++++.. |+|++||++|++|++.|.+.++.
T Consensus 474 ------~l-~~~Lp~y~~P~~~~~v~~l------P~t~~GKidR~~L~~~~~~~~~~ 517 (620)
T 4dg8_A 474 ------AL-LRQLPTWQRPHACVRVEAL------PLTAHGKLDRAALLRRLEEPLER 517 (620)
T ss_dssp ------HH-HHHSCGGGSCSEEEECSSC------CCC----CCHHHHHHHTCSCC--
T ss_pred ------HH-HHhChhhcCCcEEEEECcC------CCCcccCHhHHHHhhcccccccc
Confidence 11 2469999999999998665 99999999999999887554433
No 21
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.8e-72 Score=611.31 Aligned_cols=466 Identities=20% Similarity=0.190 Sum_probs=305.9
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 84 ~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vp 154 (570)
T 4gr5_A 84 QAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTM 154 (570)
T ss_dssp HHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEE
Confidence 57889999999986 3 79999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 161 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (611)
++|.++.+++.++++.++++++|++......+ .....++..+... .....
T Consensus 155 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~----------------------~~~~~ 204 (570)
T 4gr5_A 155 LDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEAA----------------------SDAPA 204 (570)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC-----------------------------C
T ss_pred cCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeecccc----------------------ccccc
Confidence 99999999999999999999999987643322 1111221111100 00011
Q ss_pred CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257 162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241 (611)
Q Consensus 162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~ 241 (611)
........++++++++|||||||.||+|+++|+++.+.+... ..+ ++..++++++.+|++|..+...++.+++.
T Consensus 205 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~~ 278 (570)
T 4gr5_A 205 GNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSWDAFGLELFGALLF 278 (570)
T ss_dssp CCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTSSTHHHHHHHHHTT
T ss_pred cccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccHHHHHHHHHHHHhc
Confidence 122234578999999999999999999999999998766542 222 67889999999999987777777888999
Q ss_pred CceEEEecC---ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 007257 242 GASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 318 (611)
Q Consensus 242 G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (611)
|+++++.+. ++..+++.++++++|++.++|+++..|.+....
T Consensus 279 G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------------------- 323 (570)
T 4gr5_A 279 GARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------------------- 323 (570)
T ss_dssp TCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------------------
T ss_pred CCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------------------
Confidence 999999863 899999999999999999999999988652110
Q ss_pred HHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC---ccccCccCCCcc
Q 007257 319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MCMVGTAGPVSV 394 (611)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~---~~~~~~~G~~~~ 394 (611)
.+++||.+++||++++++..+.+.+.+ ++.+++.||+||++++++...... .....++|+|++
T Consensus 324 -------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~ 390 (570)
T 4gr5_A 324 -------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLA 390 (570)
T ss_dssp -------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECT
T ss_pred -------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeC
Confidence 124899999999999999999888877 899999999999998776554322 223356899999
Q ss_pred CeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cC--------CccccCceEEEccCCeEEEEec
Q 007257 395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIGQILPNGVVKIIDR 465 (611)
Q Consensus 395 ~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~--------g~~~TGD~~~~~~dG~l~~~GR 465 (611)
+++++|+| +++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+ |||+|||+|++|+||+|++.||
T Consensus 391 ~~~v~i~d-~~~--~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR 467 (570)
T 4gr5_A 391 GKRAYVLD-DDL--KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467 (570)
T ss_dssp TEEEEEEC-TTS--CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC
T ss_pred CCEEEEEC-CCC--CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcc
Confidence 99999998 554 567788999999999999999999999999998 33 6999999999999999999999
Q ss_pred cCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHH
Q 007257 466 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN 542 (611)
Q Consensus 466 ~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (611)
.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++. +.++|+|++..+...
T Consensus 468 ~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~----------------------- 523 (570)
T 4gr5_A 468 ADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP----------------------- 523 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC-----------------------
Confidence 9999997 9999999999999999999999999997654 478888887653210
Q ss_pred HHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHH
Q 007257 543 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY 594 (611)
Q Consensus 543 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~ 594 (611)
...++|+++++ ++|+.|++|+.++++++. |+|++||++|++|++.
T Consensus 524 ~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 524 PDAAELRRHVA-EALPAYMVPVECVPVDEL------PRTPNGKLDRRALTGS 568 (570)
T ss_dssp ----------------------------------------------------
T ss_pred cCHHHHHHHHH-hhCccccCCcEEEEcccC------CCCCCcCcchHhhhcc
Confidence 01223444443 779999999999988665 9999999999999864
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=8.3e-72 Score=602.15 Aligned_cols=483 Identities=16% Similarity=0.139 Sum_probs=385.7
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 13 ~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vp 83 (521)
T 3l8c_A 13 FAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIP 83 (521)
T ss_dssp HHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 57889999999986 3 79999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcc--c
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG--K 159 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 159 (611)
+++.++.+++.++++.++++++|++++..... ... . ...+.++.... .
T Consensus 84 l~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------~~~-~---------------------~~~~~~~~~~~~~~ 133 (521)
T 3l8c_A 84 VDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------EGI-S---------------------LVSLSEIESAKLAE 133 (521)
T ss_dssp EETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------TTS-E---------------------EEEHHHHHHHHHHT
T ss_pred cCccccHHHHHHHHHhCCCCEEEecCcccccc--------ccC-c---------------------ccchhhhhhccccc
Confidence 99999999999999999999999987532211 000 1 11222221111 1
Q ss_pred ccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHh
Q 007257 160 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF 239 (611)
Q Consensus 160 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l 239 (611)
..........++++++++|||||||.||+|+++|+++.+.+....... ......++++++..|++|..++...+.++
T Consensus 134 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 210 (521)
T 3l8c_A 134 MPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFDLSVMYWAPTL 210 (521)
T ss_dssp CCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSGGGHHHHHHHH
T ss_pred CCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHHHHHHHHHHHH
Confidence 112223456789999999999999999999999999998776654331 12678899999999999998887788889
Q ss_pred hcCceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007257 240 RRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 315 (611)
Q Consensus 240 ~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (611)
..|+++++.+. ++..+++.+.++++|++.++|+++..+.....
T Consensus 211 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------------- 257 (521)
T 3l8c_A 211 ALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--------------------------------- 257 (521)
T ss_dssp HTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT---------------------------------
T ss_pred hcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc---------------------------------
Confidence 99999998865 88999999999999999999999987653110
Q ss_pred cchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC----ccccCccC
Q 007257 316 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAG 390 (611)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~----~~~~~~~G 390 (611)
.. ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++...... .....++|
T Consensus 258 ----~~--------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG 325 (521)
T 3l8c_A 258 ----FC--------QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIG 325 (521)
T ss_dssp ----CS--------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEE
T ss_pred ----cc--------cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccc
Confidence 00 01125899999999999999999999888 899999999999998776543321 12336799
Q ss_pred CCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc----cCCccccCceEEEccCCeEEEEecc
Q 007257 391 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILPNGVVKIIDRK 466 (611)
Q Consensus 391 ~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~----~~g~~~TGD~~~~~~dG~l~~~GR~ 466 (611)
+|+++++++|+| +++ .+++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.
T Consensus 326 ~p~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~ 402 (521)
T 3l8c_A 326 YPKPDSPTYIID-EDG--KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRL 402 (521)
T ss_dssp EECTTSCEEEEC-TTS--CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEG
T ss_pred cccCCCEEEEEC-CCc--CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcc
Confidence 999999999998 554 466778899999999999999999999999998 3579999999999999999999999
Q ss_pred CCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC----CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHH
Q 007257 467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN 542 (611)
Q Consensus 467 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (611)
||+|++ +|++|+|.+||++|.+||+|.+|+|++..+. +.++|+|+++++.... .+. ..
T Consensus 403 ~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~---------------~~~--~~ 464 (521)
T 3l8c_A 403 DFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKER---------------FDR--EL 464 (521)
T ss_dssp GGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGG---------------CSS--HH
T ss_pred cceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccc---------------ccc--ch
Confidence 999997 8999999999999999999999999986533 4789999988753100 000 11
Q ss_pred HHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 007257 543 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 599 (611)
Q Consensus 543 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~ 599 (611)
.+.++|+++++ ++||.|++|+.|+++++. |+|++||++|++|+++++++-
T Consensus 465 ~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 465 ELTKAIKASVK-DHMMSYMMPSKFLYRDSL------PLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp HHHHHHHHHSG-GGSCGGGSCSEEEECSSC------CBCTTSSBCHHHHHHHTC---
T ss_pred hhHHHHHHHHH-hhCccccCCeEEEEeccc------CCCCCcCccHHHHhhhhhcCC
Confidence 23456666665 789999999999998765 999999999999999986643
No 23
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.1e-71 Score=602.35 Aligned_cols=464 Identities=20% Similarity=0.228 Sum_probs=381.8
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 48 ~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 118 (563)
T 1amu_A 48 QVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVP 118 (563)
T ss_dssp HHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEE
Confidence 57889999999976 3 79999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 161 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (611)
++|.++.+++.++++.++++++|+++.......... ....+..++.... ... ..
T Consensus 119 l~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~~--------------------~~~-~~ 172 (563)
T 1amu_A 119 IDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDTI--------------------KIR-EG 172 (563)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCSTT--------------------TTS-CC
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchhh--------------------ccc-cC
Confidence 999999999999999999999999987654432211 1112222222100 000 01
Q ss_pred CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257 162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241 (611)
Q Consensus 162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~ 241 (611)
.....+..++++++++|||||||.||||++||+++.+.+......+ ++..+|++++..|++|..++..++.+++.
T Consensus 173 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~~ 247 (563)
T 1amu_A 173 TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDASVWEMFMALLT 247 (563)
T ss_dssp SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHHHHHHHHHHTT
T ss_pred ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHHHHHHHHHHHC
Confidence 1112345678999999999999999999999999998877766555 78899999999999999998778888999
Q ss_pred CceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257 242 GASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 317 (611)
Q Consensus 242 G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (611)
|+++++.+. ++..+++.++++++|+++++|+++..+...
T Consensus 248 G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------------------- 290 (563)
T 1amu_A 248 GASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------------------- 290 (563)
T ss_dssp TCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------------------
T ss_pred CCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------------------
Confidence 999998864 889999999999999999999988765320
Q ss_pred hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC--ccccCccCCCccC
Q 007257 318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVY 395 (611)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~--~~~~~~~G~~~~~ 395 (611)
.++++|.+++||+++++++.+.|.+ .+++++.||+||++.+++...... .....++|+|+++
T Consensus 291 --------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~ 354 (563)
T 1amu_A 291 --------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQN 354 (563)
T ss_dssp --------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTT
T ss_pred --------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCCcccceeCC
Confidence 1248999999999999999999876 478999999999998766544322 2234689999999
Q ss_pred eeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc-------CCccccCceEEEccCCeEEEEeccCC
Q 007257 396 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRKKN 468 (611)
Q Consensus 396 ~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~dG~l~~~GR~~d 468 (611)
++++|+| +++ .+++.|+.|||+|+|++++.||+++++.|.+.|. +|||+|||+|++|+||++++.||.||
T Consensus 355 ~~v~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d 431 (563)
T 1amu_A 355 TQIYIVD-ENL--QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDN 431 (563)
T ss_dssp EEEEEEC-TTS--CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGG
T ss_pred CEEEEEC-CCc--CCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccC
Confidence 9999998 554 4667788999999999999999999999999983 35999999999999999999999999
Q ss_pred eEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHH
Q 007257 469 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL 545 (611)
Q Consensus 469 ~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (611)
+|++ +|++|+|.+||++|.+||+|.+|+|++.++. +.++|+|++.... +.
T Consensus 432 ~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~------------------~~-------- 484 (563)
T 1amu_A 432 QVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI------------------PL-------- 484 (563)
T ss_dssp EEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC------------------CH--------
T ss_pred EEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC------------------CH--------
Confidence 9997 9999999999999999999999999987654 3788999876421 11
Q ss_pred HHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHH
Q 007257 546 SELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY 595 (611)
Q Consensus 546 ~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~ 595 (611)
++|+++++ ++||.|++|+.|+++++. |+|++||++|++|++.+
T Consensus 485 ~~l~~~l~-~~L~~y~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 485 EQLRQFSS-EELPTYMIPSYFIQLDKM------PLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp HHHHHHHH-HHSCGGGSCSEEEECSSC------CBCTTSSBCGGGSCCCC
T ss_pred HHHHHHHH-hhCchhhCCcEEEEeccc------CCCCCcChhHHhcCCcc
Confidence 23444443 679999999999998765 99999999999998754
No 24
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.6e-71 Score=596.90 Aligned_cols=483 Identities=22% Similarity=0.223 Sum_probs=367.1
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+++. + +++||+||.++++++|++|.+. +||+|+++++|++++++++|||+++|++++|
T Consensus 10 ~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 10 QAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp HHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 57889999999986 3 6999999999999999999987 8999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCce-eeHHHHHhcccc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSWDEFLHLGKV 160 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 160 (611)
+++.++.+++.++++.++++++|++............ ......+......... ......... .....+......
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 152 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGL---LDNTMGIQYDTSNETVVPKESP 152 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC-----------------------------------CCH
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeecccccc---cccccccccccchhhccccCCc
Confidence 9999999999999999999999998765433211110 0111111100000000 000000000 000111111111
Q ss_pred cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhh
Q 007257 161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240 (611)
Q Consensus 161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~ 240 (611)
.........++++++++|||||||.||+|.++|+++...+......+ ++..++++++..|++|.+|+...+.++.
T Consensus 153 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~~~~~~~l~ 227 (501)
T 3ipl_A 153 SNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGLSVLLRAVI 227 (501)
T ss_dssp HHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHHHHHHHHHH
T ss_pred ccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHHHHHHHHHH
Confidence 11122345789999999999999999999999999999888877666 7889999999999999999988888999
Q ss_pred cCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257 241 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL 319 (611)
Q Consensus 241 ~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (611)
.|+++++.+. ++..+++.++++++|+++++|+++..|.+....
T Consensus 228 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------------ 271 (501)
T 3ipl_A 228 EGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH------------------------------------ 271 (501)
T ss_dssp HTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC------------------------------------
T ss_pred cCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC------------------------------------
Confidence 9999999877 999999999999999999999999988652110
Q ss_pred HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC-ccccCccCCCccCeeE
Q 007257 320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSEL 398 (611)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~-~~~~~~~G~~~~~~~v 398 (611)
...+||.+++||+++++++.+.+.+ +++++++.||+||+++.+....+.. ....+++|.|++++++
T Consensus 272 ------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 338 (501)
T 3ipl_A 272 ------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDV 338 (501)
T ss_dssp ------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEE
T ss_pred ------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEE
Confidence 0027999999999999999999987 5999999999999987655544322 2345789999999999
Q ss_pred EEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceec
Q 007257 399 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 478 (611)
Q Consensus 399 ~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v 478 (611)
++++ ++ .++.|||+|+|+.++.||+++++.+.. |.+|||+|||+|++|+||++++.||.||+|++ +|++|
T Consensus 339 ~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~v 408 (501)
T 3ipl_A 339 KIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGENI 408 (501)
T ss_dssp EEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCEE
T ss_pred EEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceEEE-CCEEE
Confidence 9998 43 345799999999999999999999887 88999999999999999999999999999996 99999
Q ss_pred CcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhC
Q 007257 479 ALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERN 555 (611)
Q Consensus 479 ~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 555 (611)
+|.+||++|.+||+|.+|+|++.++. +.++++++...+. +. ++|+++++ +
T Consensus 409 ~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~------------------~~--------~~l~~~l~-~ 461 (501)
T 3ipl_A 409 YPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------------------SK--------AQLIAYLS-K 461 (501)
T ss_dssp CHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CH--------HHHHHHHH-H
T ss_pred CHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC------------------CH--------HHHHHHHH-h
Confidence 99999999999999999999987655 3678888865432 21 23444443 6
Q ss_pred CCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257 556 KLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 598 (611)
Q Consensus 556 ~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 598 (611)
+||.|++|+.|+++++. |+|++||++|++|++.+.++
T Consensus 462 ~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 462 HLAKYKVPKHFEKVDTL------PYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp HSCGGGSCSEEEECSSC------C-------------------
T ss_pred hCccccCCCEEEEeccc------CCCCCCCEeHHHHhhccccc
Confidence 79999999999998765 99999999999999988664
No 25
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=9.4e-71 Score=590.05 Aligned_cols=465 Identities=25% Similarity=0.293 Sum_probs=364.7
Q ss_pred ccccCCC-CCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257 2 SVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV 80 (611)
Q Consensus 2 ~a~~~pd-~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~ 80 (611)
+|+++|+ ++|+++. + +++||+||.++++++|.+|. .|++|+++++|++++++++|||+++|++++
T Consensus 31 ~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~v 96 (505)
T 3nyq_A 31 APTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAV 96 (505)
T ss_dssp CCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCEE
T ss_pred HHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEE
Confidence 5677776 9999986 3 79999999999999998874 388999999999999999999999999999
Q ss_pred eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257 81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 160 (611)
Q Consensus 81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (611)
|++|.++.+++.+++++++++++|++..... .........+ ..+.. ..
T Consensus 97 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~-------------------------~~ 144 (505)
T 3nyq_A 97 PLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR-------------------------AR 144 (505)
T ss_dssp EECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT-------------------------CC
T ss_pred EcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc-------------------------cc
Confidence 9999999999999999999999999865210 0011111111 11100 01
Q ss_pred cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHh
Q 007257 161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFF 239 (611)
Q Consensus 161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l 239 (611)
.........++++++++|||||||.||+|+++|+++.+.+......+ ++..+|++++.+|++|..|+.. .+.++
T Consensus 145 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~~~~~~~~l 219 (505)
T 3nyq_A 145 GAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFHVHGLVLGILGPL 219 (505)
T ss_dssp CCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTSHHHHTTTTHHHH
T ss_pred cCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHHHHHHHHHHHHHH
Confidence 11222345788999999999999999999999999999988877776 7889999999999999999875 67789
Q ss_pred hcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 007257 240 RRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 318 (611)
Q Consensus 240 ~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (611)
..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.+.....
T Consensus 220 ~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------------- 266 (505)
T 3nyq_A 220 RRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE-------------------------------- 266 (505)
T ss_dssp HHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH--------------------------------
T ss_pred hcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch--------------------------------
Confidence 99999999876 899999999 88999999999999988764321100
Q ss_pred HHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeE
Q 007257 319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL 398 (611)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v 398 (611)
....+ +++|.+++||+++++++.+++.+.+|+++++.||+||++..++...... ...+++|+|++++++
T Consensus 267 --~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~ 335 (505)
T 3nyq_A 267 --LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PRAGTVGVPLPGVEL 335 (505)
T ss_dssp --HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CCTTCCCEECTTCEE
T ss_pred --hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CCCCCcccCCCCCEE
Confidence 00011 3899999999999999999999989999999999999987766554433 344889999999999
Q ss_pred EEeecCCCCCCCC-CCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEecc-CCeEEcCCc
Q 007257 399 RLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK-KNLIKISQG 475 (611)
Q Consensus 399 ~i~~~~~~~~~~~-~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~-~d~i~~~~G 475 (611)
+|+| +++...+. +.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++++||.+++.||. ||+|++ +|
T Consensus 336 ~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~-~G 413 (505)
T 3nyq_A 336 RLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS-GG 413 (505)
T ss_dssp EEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEE-TT
T ss_pred EEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEe-CC
Confidence 9999 66554433 447899999999999999999999999999 6999999999999999999999998 599997 99
Q ss_pred eecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHH
Q 007257 476 EYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 552 (611)
Q Consensus 476 ~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 552 (611)
++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++.. .. + .++|++++
T Consensus 414 ~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~-------~~--------~--------~~~l~~~l 470 (505)
T 3nyq_A 414 YKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA-------PP--------A--------LGTLADHV 470 (505)
T ss_dssp EEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS-------CC--------C--------HHHHHHHH
T ss_pred EEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC-------CC--------C--------HHHHHHHH
Confidence 99999999999999999999999987654 48999999875320 00 1 12344444
Q ss_pred HhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHH
Q 007257 553 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 593 (611)
Q Consensus 553 ~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~ 593 (611)
+ ++||.|++|+.|+++++. |+|++||++|++|++
T Consensus 471 ~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 471 A-ARLAPHKRPRVVRYLDAV------PRNDMGKIMKRALNR 504 (505)
T ss_dssp H-HHTCGGGSCSEEEECSCC------CC-------------
T ss_pred H-hhCCCCcCccEEEEECCC------CCCCCcCeeHHhhcc
Confidence 3 679999999999998665 999999999999986
No 26
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=8e-71 Score=636.02 Aligned_cols=510 Identities=25% Similarity=0.310 Sum_probs=328.5
Q ss_pred CccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257 1 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV 80 (611)
Q Consensus 1 ~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~ 80 (611)
++|+++||++|+++. ++ + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++
T Consensus 69 ~~a~~~pd~~Al~~~---~~--~--~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~v 141 (979)
T 3tsy_A 69 QNISEFATKPCLING---PT--G--HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATAT 141 (979)
T ss_dssp TTGGGTTTSEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEE
T ss_pred HHHHhCCCCeEEEEC---CC--C--cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEE
Confidence 468899999999975 21 1 7899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257 81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 160 (611)
Q Consensus 81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (611)
|++|.++.+++.+++++++++++|++......+...... ....++.+++... .........|.++......
T Consensus 142 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 212 (979)
T 3tsy_A 142 AANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND---DGVVIVCIDDNES------VPIPEGCLRFTELTQSTTE 212 (979)
T ss_dssp EECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT---SCCEEEECCCCTT------SCCCTTEEEGGGTSSCCSG
T ss_pred eeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc---CCceEEEeCCccc------ccCCcccccHHHHhhcccc
Confidence 999999999999999999999999998765443221111 1123444443211 0111234455555433221
Q ss_pred --cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHH
Q 007257 161 --NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEY 237 (611)
Q Consensus 161 --~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~ 237 (611)
......+..++++++|+|||||||.||+|+++|+++.+.+........ ....+..++++++.+|++|.+++.. ++.
T Consensus 213 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~ 291 (979)
T 3tsy_A 213 ASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLC 291 (979)
T ss_dssp GGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHH
T ss_pred ccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhc-ccccCCCCCEEEEECchHHHHHHHHHHHH
Confidence 122334567899999999999999999999999999988765433211 0125778999999999999999965 566
Q ss_pred HhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257 238 FFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA 316 (611)
Q Consensus 238 ~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (611)
++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...
T Consensus 292 ~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------------- 337 (979)
T 3tsy_A 292 GLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE---------------------------------- 337 (979)
T ss_dssp HHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG----------------------------------
T ss_pred HHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc----------------------------------
Confidence 7999999999876 99999999999999999999999988865211
Q ss_pred chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeecc----CCCccccCccCC
Q 007257 317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGP 391 (611)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~----~~~~~~~~~~G~ 391 (611)
... ..+++||.+++||+++++++.+++.+.+ ++++++.||+||++.+++.+. .......+++|.
T Consensus 338 ---~~~--------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 406 (979)
T 3tsy_A 338 ---TEK--------YDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT 406 (979)
T ss_dssp ---GGT--------SCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCE
T ss_pred ---ccC--------CCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCc
Confidence 111 1235899999999999999999999988 899999999999998766542 112334588999
Q ss_pred CccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeE
Q 007257 392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLI 470 (611)
Q Consensus 392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i 470 (611)
|+++++++|+| ++. ..+++.|+.|||+|+|++++.||+++|+.+.+.| .+|||+|||+|++++||++++.||.||+|
T Consensus 407 p~~~~~~~i~d-~~~-~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~i 484 (979)
T 3tsy_A 407 VVRNAEMKIVD-PDT-GDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELI 484 (979)
T ss_dssp ECSSCEEEEEC-TTS-CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--
T ss_pred ccCCcEEEEEe-CCC-CCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEE
Confidence 99999999998 443 3677788999999999999999999999999999 79999999999999999999999999999
Q ss_pred EcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHH
Q 007257 471 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 547 (611)
Q Consensus 471 ~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (611)
|+ +|++|+|.+||++|.+||+|.+|+|++.++. +.++|+|++.++... + .++
T Consensus 485 k~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~----------------~--------~~~ 539 (979)
T 3tsy_A 485 KY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSEL----------------S--------EDD 539 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCC----------------C--------HHH
Confidence 97 8999999999999999999999999997654 478889887654210 1 123
Q ss_pred HHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhh
Q 007257 548 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 606 (611)
Q Consensus 548 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~~~ 606 (611)
|++++ +++||.|++|+.++++++. |+|++||++|++|+++|++.+...|...
T Consensus 540 l~~~l-~~~l~~~~~p~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~~~~~~~~~ 591 (979)
T 3tsy_A 540 VKQFV-SKQVVFYKRINKVFFTESI------PKAPSGKILRKDLRAKLANGLGSGMASV 591 (979)
T ss_dssp --------------------------------------------------------CCH
T ss_pred HHHHH-HHhcccccCCeEEEEeCCc------CcCCCCCeeHHHHHHHHHhhcCCccccc
Confidence 44444 3789999999999988665 9999999999999999999888888654
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=8.2e-70 Score=591.83 Aligned_cols=509 Identities=17% Similarity=0.139 Sum_probs=308.4
Q ss_pred ccccCCCCCceeeeccccC----CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 007257 2 SVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL 77 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~----~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 77 (611)
+|+++||++|+++. ++ ..+..+++||+||.++++++|++|.+.|+ +||+|+++++|++++++++|||+++|+
T Consensus 29 ~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Ga 104 (562)
T 3ite_A 29 WAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGN 104 (562)
T ss_dssp HHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred HHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 57899999999986 32 22334799999999999999999999999 799999999999999999999999999
Q ss_pred EEeeCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhc
Q 007257 78 ICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL 157 (611)
Q Consensus 78 ~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (611)
+++|+++.++.+++.+++++++++++|+++....... ......++..... .+.+....
T Consensus 105 v~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~----------------~~~~~~~~ 162 (562)
T 3ite_A 105 TYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKNQ----------------SFIENLST 162 (562)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTCH----------------HHHHHHHH
T ss_pred EEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccch----------------hhhhhccc
Confidence 9999999999999999999999999999876543221 1111222221111 11122211
Q ss_pred ccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccc---cccCCCCCCcEEEEecchhhHHHHHH
Q 007257 158 GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVYLSFLPLAHILDRVI 234 (611)
Q Consensus 158 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~ 234 (611)
. ..........++++++++|||||||.||+|+++|+++.+.+..+...+. .....+...+++++..|+.|..++..
T Consensus 163 ~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (562)
T 3ite_A 163 Q-DTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE 241 (562)
T ss_dssp S-CCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHH
T ss_pred c-cccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHH
Confidence 1 1112223456788999999999999999999999999887766543321 01124677899999999999888887
Q ss_pred HHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCC
Q 007257 235 EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 312 (611)
Q Consensus 235 ~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (611)
.+.++..|+++++.+. .+..+.+.++++++|+++++|+++..+...
T Consensus 242 ~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-------------------------------- 289 (562)
T 3ite_A 242 MFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-------------------------------- 289 (562)
T ss_dssp HHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC--------------------------------
T ss_pred HHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC--------------------------------
Confidence 8888999999988765 467888999999999999999987654210
Q ss_pred CCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCC
Q 007257 313 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV 392 (611)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~ 392 (611)
...+++||.+++||+++++++.+.|.+.+++++++.||+||++..++..........+++|.|
T Consensus 290 -----------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p 352 (562)
T 3ite_A 290 -----------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHP 352 (562)
T ss_dssp -----------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEE
T ss_pred -----------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCcccccc
Confidence 011258999999999999999999998889999999999999987776655444455789999
Q ss_pred ccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCC--ccccCceEEEccCCeEEEEeccCCeE
Q 007257 393 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQILPNGVVKIIDRKKNLI 470 (611)
Q Consensus 393 ~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g--~~~TGD~~~~~~dG~l~~~GR~~d~i 470 (611)
++++++++++ +++ ..+++.|+.|||+|+|++++.||+++++.+...+.+| ||+|||+|++|+||++++.||.||+|
T Consensus 353 ~~~~~~~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~I 430 (562)
T 3ite_A 353 LGDSVAHVLA-PGS-NEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQV 430 (562)
T ss_dssp CTTCEEEEEC-TTS-SCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC----
T ss_pred CCCCeEEEEe-CCC-CCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEE
Confidence 9999999998 433 3567788999999999999999999999988777777 99999999999999999999999999
Q ss_pred EcCCceecCcHHHHHHHhcC-cCcceEEEEecCCCC---eEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHH
Q 007257 471 KISQGEYVALEYLENVYCVA-PIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS 546 (611)
Q Consensus 471 ~~~~G~~v~~~~iE~~l~~~-p~V~~~~v~~~~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (611)
|+ +|++|+|.+||++|.+| |.+.+++|++.+++. ..++.++...+... ..+... ..+..+.+.+
T Consensus 431 k~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~---~~~~~~~~~~ 498 (562)
T 3ite_A 431 KV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAV--------RGELRW---INENYKEINN 498 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccc--------cccccc---cccchhhHHH
Confidence 97 99999999999999998 788999988866542 33333333322110 000000 0011123345
Q ss_pred HHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccc-cccccchHHHHHHHHH-HHHHHHhhhc
Q 007257 547 ELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT-ATLKKKRNKLLIYYQV-EIDQLYEKLA 607 (611)
Q Consensus 547 ~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t-~~GKv~R~~l~~~~~~-~~~~~y~~~~ 607 (611)
+|+++++ ++||.|++|+.|+++++. |+| ++||++|++|+++|++ ....++...+
T Consensus 499 ~l~~~~~-~~L~~y~~P~~i~~v~~l------P~t~~~GKi~r~~L~~~~~~~~~~~~~~~~s 554 (562)
T 3ite_A 499 SLRQACE-QTLPAYMVPDFIIPISFI------PLRDTSAKTDAKALEHMFHTLSLGELFGESS 554 (562)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHH-hhCCcccCCcEEEEeccC------CCCCCCCcchHHHHHHHHhccCHHHHhccCc
Confidence 6777775 789999999999998765 988 8999999999999976 3455555443
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.7e-68 Score=584.03 Aligned_cols=492 Identities=17% Similarity=0.191 Sum_probs=383.7
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+++. + .+..+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 20 ~a~~~p~~~a~~~~---~--~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vp 94 (590)
T 3kxw_A 20 RALHSPNKKSCTFL---N--KELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVP 94 (590)
T ss_dssp HHHHCTTSEEEEEE---E--TTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCCeEEEEE---c--CCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEE
Confidence 57889999999987 4 223489999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC---ChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcc
Q 007257 82 LYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG 158 (611)
Q Consensus 82 l~~~~---~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (611)
++|.+ +.+++.++++.+++++++++.+....+........+....+..+. .+.+.. .
T Consensus 95 l~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~-~ 154 (590)
T 3kxw_A 95 IYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA-------------------LESIEL-N 154 (590)
T ss_dssp ECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE-------------------GGGCCG-G
T ss_pred ecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee-------------------chhccc-c
Confidence 99988 457899999999999999998876655432211111111111111 111100 0
Q ss_pred cccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHH
Q 007257 159 KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEY 237 (611)
Q Consensus 159 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~ 237 (611)
...........++++++|+|||||||.||+|++||+++.+.+......+ ++..+|++++.+|++|.+|+.. ++.
T Consensus 155 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~g~~~~~~~ 229 (590)
T 3kxw_A 155 RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPHHDMGLIGCILT 229 (590)
T ss_dssp GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHTTTHH
T ss_pred ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCCcchhhHHHHHH
Confidence 0112223456789999999999999999999999999999998877766 7889999999999999999987 677
Q ss_pred HhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCC
Q 007257 238 FFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 312 (611)
Q Consensus 238 ~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (611)
+++.|+++++.+. ++..+++.++++++|++.++|.++..+.+.+...
T Consensus 230 ~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---------------------------- 281 (590)
T 3kxw_A 230 PIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE---------------------------- 281 (590)
T ss_dssp HHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG----------------------------
T ss_pred HHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh----------------------------
Confidence 8999999999864 7899999999999999999999998876532111
Q ss_pred CCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC------CceeeccccCCCCCceeeccCC-----
Q 007257 313 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGPTTVCFPD----- 381 (611)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~tE~g~~~~~~~~~----- 381 (611)
... ...+++||.+++||+++++++.+.|.+.++ .++++.||+||++++++.....
T Consensus 282 ------~~~--------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~ 347 (590)
T 3kxw_A 282 ------KKE--------GLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKT 347 (590)
T ss_dssp ------GGT--------TCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCE
T ss_pred ------hcc--------CCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCcee
Confidence 001 112359999999999999999999998873 4799999999999887754321
Q ss_pred ---------------------CccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhh
Q 007257 382 ---------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 440 (611)
Q Consensus 382 ---------------------~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~ 440 (611)
......++|.|+++ ++|+| ++ +..+++.|+.|||+|+||+++.||+++++.|.+.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~-~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~ 423 (590)
T 3kxw_A 348 LTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PD-TLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHA 423 (590)
T ss_dssp EEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TT-TCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHH
T ss_pred eeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CC-CCcCCCCCCEEEEEEeCCcccccccCChhHHHHH
Confidence 11234678999988 78887 44 3467788899999999999999999999999999
Q ss_pred ccC-------C--ccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHH-hcCcCcc--eEEEEecCCC--Ce
Q 007257 441 IID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DIWVYGDSLK--SM 506 (611)
Q Consensus 441 ~~~-------g--~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-~~~p~V~--~~~v~~~~~~--~~ 506 (611)
|.+ | ||+|||+|++| ||+|++.||.||+||+ +|++|+|.+||++| ..+|+|. +|+|++.++. +.
T Consensus 424 f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~~~~ 501 (590)
T 3kxw_A 424 FAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYK 501 (590)
T ss_dssp HCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETTEEE
T ss_pred HhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEEEecCCCCce
Confidence 943 5 99999999999 9999999999999998 99999999999999 8899998 7888886543 47
Q ss_pred EEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceee-eEEEecCCCCCCCCccccccc
Q 007257 507 LVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLK 585 (611)
Q Consensus 507 ~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~P~t~~GK 585 (611)
+++++++.++.... .+..++.+.+.+.+.+. ++.|. .+.+++ ++.+|+|++||
T Consensus 502 ~~~~v~~~~~~~~~--------------~~~~~l~~~l~~~l~~~--------~~~p~~~i~~v~----~~~lP~t~sGK 555 (590)
T 3kxw_A 502 LTVMCEVKNRFMDD--------------VAQDNLFNEIFELVYEN--------HQLEVHTIVLIP----LKAMPHTTSGK 555 (590)
T ss_dssp EEEEEEESCTTCCH--------------HHHHHHHHHHHHHHHHH--------HSCCCCEEEEEE----TTCSCCCSCHH
T ss_pred EEEEEEeccccccc--------------hhHHHHHHHHHHHHHHH--------cCCceeEEEEEC----CCccCcCCCcH
Confidence 88888877542000 01223333333333221 33443 455553 24469999999
Q ss_pred cchHHHHHHHHH
Q 007257 586 KKRNKLLIYYQV 597 (611)
Q Consensus 586 v~R~~l~~~~~~ 597 (611)
++|++|+++|.+
T Consensus 556 i~R~~L~~~~~~ 567 (590)
T 3kxw_A 556 IRRNFCRKHLLD 567 (590)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999999865
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=5.2e-68 Score=580.43 Aligned_cols=496 Identities=18% Similarity=0.216 Sum_probs=385.6
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++|+.+++... .+..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 30 ~a~~~p~~~~~~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vp 103 (576)
T 3gqw_A 30 AALSSAGMNFYDRR------CQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVP 103 (576)
T ss_dssp HTTSSCEEEEECTT------SCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HhhCCCCeEEeCCC------CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCeEee
Confidence 56788887776542 223379999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-------hhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHH
Q 007257 82 LYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF 154 (611)
Q Consensus 82 l~~~~~-------~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (611)
+++.++ .+++.++++.+++++++++++....+...... .+.. .++ ... .
T Consensus 104 l~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~-~~~---------------------~~~-~ 159 (576)
T 3gqw_A 104 LAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHD-NPEL-HVL---------------------SHA-W 159 (576)
T ss_dssp ECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGG-CTTC-EEE---------------------EHH-H
T ss_pred cCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhcc-CCcc-eec---------------------chh-h
Confidence 999999 78999999999999999998766554322211 1111 111 111 1
Q ss_pred HhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccc-cccccCCCCCCcEEEEecchhhHHHHH
Q 007257 155 LHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF-LDQFEDKMTVDDVYLSFLPLAHILDRV 233 (611)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~p~~~~~g~~ 233 (611)
...............++++++++|||||||.||+|+++|+++.+.+...... + ++..+|++++.+|++|.+|+.
T Consensus 160 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~g~~ 234 (576)
T 3gqw_A 160 FKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI-----KLRPGDRCVSWLPFYHDMGLV 234 (576)
T ss_dssp HHTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTS-----CCCTTCCEEECCCTTSHHHHH
T ss_pred hhcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhccc-----CCCCcceEEEcCCccccccHH
Confidence 1111122223334568999999999999999999999999999887765433 3 688999999999999999987
Q ss_pred H-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007257 234 I-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 307 (611)
Q Consensus 234 ~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (611)
. .+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+.....
T Consensus 235 ~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------------- 291 (576)
T 3gqw_A 235 GFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEK----------------------- 291 (576)
T ss_dssp HHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHH-----------------------
T ss_pred HHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhccc-----------------------
Confidence 6 5556888999888763 8899999999999999999999998775422211
Q ss_pred hhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc------CCceeeccccCCCCCceeeccCC
Q 007257 308 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC------CAFLVQGYGLTETCGPTTVCFPD 381 (611)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~------~~~v~~~yG~tE~g~~~~~~~~~ 381 (611)
......++++|.+++||+++++++.+.|.+.+ +.++++.||+||++.+++.....
T Consensus 292 -------------------~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~ 352 (576)
T 3gqw_A 292 -------------------DLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEA 352 (576)
T ss_dssp -------------------HHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTT
T ss_pred -------------------ccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeeccccc
Confidence 11112236899999999999999999999887 68899999999999887765422
Q ss_pred Cc---------------------------cccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCCh
Q 007257 382 EM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP 434 (611)
Q Consensus 382 ~~---------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~ 434 (611)
.. ....++|+|+++++++|+| +++ .+++.|+.|||+|+|++++.||++++
T Consensus 353 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~~~~gY~~~~ 429 (576)
T 3gqw_A 353 SGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAG--MPVAERVVGHICISGPSLMSGYFGDQ 429 (576)
T ss_dssp CCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTS--CBCCTTBCEEEEEESTTSCCCBTTCH
T ss_pred CCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCC--CCCCCCCeEEEEEeCccccccccCCc
Confidence 10 0113789999999999998 554 56677889999999999999999999
Q ss_pred HhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC-CeEEEEEec
Q 007257 435 DLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK-SMLVAVVVP 513 (611)
Q Consensus 435 ~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~-~~~~a~vv~ 513 (611)
+.+.+.+.+|||+|||+|++ +||++++.||.||+||+ +|++|+|.+||++|.+||+|.++.|++..+. +.+.++++.
T Consensus 430 ~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~~ 507 (576)
T 3gqw_A 430 VSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKIILQIQC 507 (576)
T ss_dssp HHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSSCCTTSEEEEECTTSCEEEEEEC
T ss_pred cccccccCCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcccccccEEEEEcCCccEEEEEEE
Confidence 99988889999999999999 79999999999999998 9999999999999999999998777664433 344444444
Q ss_pred ChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHH
Q 007257 514 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 593 (611)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~ 593 (611)
... ..+..+.+.+.+.+.+ .+.++.|..+.+++. +.+|+|++||++|++|++
T Consensus 508 ~~~--------------------~~~~~~~l~~~l~~~l----~~~~~~p~~i~~v~~----~~lP~t~~GKi~r~~l~~ 559 (576)
T 3gqw_A 508 RIS--------------------DEERRGQLIHALAARI----QSEFGVTAAIDLLPP----HSIPRTSSGKPARAEAKK 559 (576)
T ss_dssp CCC--------------------CHHHHHHHHHHHHHHH----HHHHSCCEEEEEECS----SCSCBCTTSSBCHHHHHH
T ss_pred ecC--------------------chhHHHHHHHHHHHHH----HHHhCCceeEEEECC----CCcCcCCCccchHHHHHH
Confidence 321 1112222333332222 145777888888752 356999999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 007257 594 YYQVEIDQLYEKLA 607 (611)
Q Consensus 594 ~~~~~~~~~y~~~~ 607 (611)
+|++.+++.|...+
T Consensus 560 ~~~~~~~~~~~~~~ 573 (576)
T 3gqw_A 560 RYQKAYAASLNVQE 573 (576)
T ss_dssp HHHHHHTCC-----
T ss_pred HHHHHhhhccchhh
Confidence 99999988776554
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=9.1e-67 Score=616.84 Aligned_cols=467 Identities=20% Similarity=0.238 Sum_probs=386.7
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+++. + +++||+||.++++++|++|++.|+++|++|+++++|++++++++|||+++|++++|
T Consensus 473 ~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vp 543 (1304)
T 2vsq_A 473 AVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLP 543 (1304)
T ss_dssp HHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEE
Confidence 57889999999986 3 69999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 161 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (611)
++|.++.+++.++++++++++++++......... .+.....+.+++... . ....
T Consensus 544 ldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~------------------~---~~~~ 597 (1304)
T 2vsq_A 544 VDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR------------------F---EEQA 597 (1304)
T ss_dssp CCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG------------------G---GSCS
T ss_pred ECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc------------------c---cccc
Confidence 9999999999999999999999998765433211 111223333332110 0 0011
Q ss_pred CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257 162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241 (611)
Q Consensus 162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~ 241 (611)
........++++++++|||||||.||||+++|+++.+.. .....+ ++..++++++..|++|..+...++.++..
T Consensus 598 ~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~-----~~~~~d~~l~~~~~~fd~~~~~~~~~l~~ 671 (1304)
T 2vsq_A 598 SDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYM-----AFSDQDTFLSVSNYAFDAFTFDFYASMLN 671 (1304)
T ss_dssp SCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSS-----CCCTTCEEEECSCTTSTHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhc-----CCCCCCEEEEECCccHHHHHHHHHHHHHc
Confidence 112234578999999999999999999999999998763 333333 67889999999999999888778889999
Q ss_pred CceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257 242 GASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 317 (611)
Q Consensus 242 G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (611)
|+++++.+. ++..+++.++++++|+++++|+++..+.+.....
T Consensus 672 G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~--------------------------------- 718 (1304)
T 2vsq_A 672 AARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW--------------------------------- 718 (1304)
T ss_dssp TCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH---------------------------------
T ss_pred CCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhc---------------------------------
Confidence 999999874 8899999999999999999999999886421000
Q ss_pred hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC---ccccCccCCCc
Q 007257 318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MCMVGTAGPVS 393 (611)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~---~~~~~~~G~~~ 393 (611)
+ ++||.+++||++++++..+.|.+.+ +..++|.||+||++.+++...... .....++|+|+
T Consensus 719 -------~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~ 783 (1304)
T 2vsq_A 719 -------M--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPI 783 (1304)
T ss_dssp -------H--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEEC
T ss_pred -------C--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceee
Confidence 0 2899999999999999999988877 478999999999998776544321 22336799999
Q ss_pred cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc-------CCccccCceEEEccCCeEEEEecc
Q 007257 394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRK 466 (611)
Q Consensus 394 ~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~dG~l~~~GR~ 466 (611)
++++++|+| +++ .+++.|+.|||+|+|++++.||+++++.|++.|. ++||+|||+|++++||.++++||.
T Consensus 784 ~~~~~~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~ 860 (1304)
T 2vsq_A 784 SNASVYILN-EQS--QLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRI 860 (1304)
T ss_dssp TTEEEEEEC-TTS--CBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEG
T ss_pred CCCEEEEEC-CCc--CCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCC
Confidence 999999998 554 5677888999999999999999999999999992 349999999999999999999999
Q ss_pred CCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHH
Q 007257 467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY 543 (611)
Q Consensus 467 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (611)
||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. ..++|++++.... +.
T Consensus 861 d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~------------------~~------ 915 (1304)
T 2vsq_A 861 DDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL------------------SA------ 915 (1304)
T ss_dssp GGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS------------------CH------
T ss_pred CCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC------------------CH------
Confidence 999998 9999999999999999999999999986644 4899999876521 11
Q ss_pred HHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHH
Q 007257 544 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY 594 (611)
Q Consensus 544 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~ 594 (611)
++|+++++ +.||.|++|..++++++. |+|++||++|++|.+.
T Consensus 916 --~~l~~~l~-~~Lp~ymvP~~~~~l~~l------P~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 916 --EDVKAHLK-KQLPAYMVPQTFTFLDEL------PLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp --HHHHHHHH-HHSCGGGSCSEEEEESCC------CCCSSCSSCCSCCCCC
T ss_pred --HHHHHHHH-HhChHhhhccEEEEeccc------CCCCCcccCHhhcCCc
Confidence 23444443 679999999999999765 9999999999988653
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=3.2e-56 Score=476.01 Aligned_cols=390 Identities=17% Similarity=0.208 Sum_probs=303.6
Q ss_pred ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
+|+++||++|+++....++.++.++++||+||.++++++|++|++.|+ +||+|+++++|++++++++|||+++|++++|
T Consensus 33 ~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 33 CARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVP 111 (480)
T ss_dssp HHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEe
Confidence 578899999999871101334556899999999999999999999996 9999999999999999999999999999999
Q ss_pred CCC---CCChhHHHHHHhhcCccEEEEcchhHHHHhcccccccc-CccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhc
Q 007257 82 LYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL 157 (611)
Q Consensus 82 l~~---~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (611)
+++ .++.+++.++|+.++++++|++......+......... ....++..+... .
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~- 169 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD---------------------L- 169 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC---------------------T-
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc---------------------c-
Confidence 999 78899999999999999999998876655433221110 111222222111 0
Q ss_pred ccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCC------CcEEEEecchhhHHH
Q 007257 158 GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDVYLSFLPLAHILD 231 (611)
Q Consensus 158 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~g 231 (611)
............++++++|+|||||||.||||++||+++.+.+......+ .+.. ++++++.+|++|.+|
T Consensus 170 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~l~~~pl~h~~g 244 (480)
T 3t5a_A 170 DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSALVSWLPFYHDMG 244 (480)
T ss_dssp TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEEEECCCTTSTTH
T ss_pred ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeEEEeCCCcCccH
Confidence 00111223345788999999999999999999999999998887766655 4555 899999999999999
Q ss_pred HHH-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007257 232 RVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 305 (611)
Q Consensus 232 ~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (611)
+.. ++.+++.|+++++.+. ++..+++.++++++| +.++|+++..++.....
T Consensus 245 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~---------------------- 301 (480)
T 3t5a_A 245 LVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT---------------------- 301 (480)
T ss_dssp HHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC----------------------
Confidence 765 6778999999999863 899999999999999 88999988777542110
Q ss_pred HHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC------CceeeccccCCCCCceeecc
Q 007257 306 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGPTTVCF 379 (611)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~tE~g~~~~~~~ 379 (611)
.+.. ....+++||.+++||+++++++.+.|.+.++ +.+++.||+||++..++...
T Consensus 302 -----------~~~~--------~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 362 (480)
T 3t5a_A 302 -----------DDDM--------AGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSK 362 (480)
T ss_dssp -----------TGGG--------TTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECC
T ss_pred -----------cccc--------cccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecc
Confidence 0000 1122369999999999999999999999874 46999999999998877655
Q ss_pred CCC------------------------ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChH
Q 007257 380 PDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 435 (611)
Q Consensus 380 ~~~------------------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~ 435 (611)
... .....++|+|++ ++++|+| +++ ..+++.|+.|||+|+||+++.||+++++
T Consensus 363 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~-g~~~~~g~~GEl~v~g~~v~~GY~~~pe 439 (480)
T 3t5a_A 363 PGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDT-CIECPDGTVGEIWVHGDNVANGYWQKPD 439 (480)
T ss_dssp TTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTT-TEECCTTBCEEEEEESTTSCCCBTTBHH
T ss_pred cCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCC-CcCCCCCCEEEEEEeCCccccccccCcc
Confidence 432 123468999999 9999999 443 3567788999999999999999999999
Q ss_pred hhhhhc------------cCCccccCceEEEccCCeEEEEec
Q 007257 436 LTRESI------------IDGWFHTGDIGQILPNGVVKIIDR 465 (611)
Q Consensus 436 ~~~~~~------------~~g~~~TGD~~~~~~dG~l~~~GR 465 (611)
.|++.| .+|||+|||+|+++ ||+|++.||
T Consensus 440 ~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 440 ESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp HHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred hhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 999998 35699999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.2e-50 Score=413.57 Aligned_cols=313 Identities=17% Similarity=0.124 Sum_probs=256.9
Q ss_pred CCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhcCceEEEec
Q 007257 170 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 249 (611)
Q Consensus 170 ~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 249 (611)
.|++++|+|||||||.||+|++||+++.+.+......+ ++..+|++++.+|++|.+|+..++.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 46789999999999999999999999999988877776 7899999999999999999988888899999998886
Q ss_pred CChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHH
Q 007257 250 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 329 (611)
Q Consensus 250 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (611)
. ....++.++++++|+++++|+++..+++.... .
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------------~------- 144 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------------S------- 144 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------------G-------
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------------c-------
Confidence 4 23346778999999999999999988652110 0
Q ss_pred HHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEEeecCCCCCC
Q 007257 330 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 409 (611)
Q Consensus 330 ~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~ 409 (611)
..+++||.+++||+++++++.+++.+ +++++++.||+||+++.++......... +++|.+.|++++.+.+
T Consensus 145 -~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 145 -GQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp -GGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred -ccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 01248999999999999999999987 5999999999999998877766554333 7888899998887655
Q ss_pred CCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHH--
Q 007257 410 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-- 487 (611)
Q Consensus 410 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-- 487 (611)
.|||+++|+.. .+|||+|||+|++|+|| ++++||.||+||+ +|++|+|.+||++|
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~ 271 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA 271 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence 59999998643 27899999999999888 6677999999997 99999999999877
Q ss_pred -hcCcCcceEEEE-ecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcce
Q 007257 488 -CVAPIIEDIWVY-GDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEH 562 (611)
Q Consensus 488 -~~~p~V~~~~v~-~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 562 (611)
.+||+|.+|+|+ +.++. +.++|+|+..... ...++|+++++ ++||.|++
T Consensus 272 ~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~-------------------------~~~~~l~~~l~-~~L~~~~~ 325 (358)
T 4gs5_A 272 VFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE-------------------------ALTERLTAEIR-SRVSTYEN 325 (358)
T ss_dssp HHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH-------------------------HHHHHHHHHHH-HHSCGGGS
T ss_pred hccCCCccEEEEEEecCCccCCEEEEEEEECCCCC-------------------------cCHHHHHHHHH-hhCCCCCC
Confidence 468999998887 44433 3788888766532 11234555554 67999999
Q ss_pred eeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257 563 IKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 598 (611)
Q Consensus 563 p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 598 (611)
|+.|+++++. |+|++||++|++|++++++.
T Consensus 326 P~~i~~v~~l------P~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 326 PKHIYFAKAF------AKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp CSCEEEESSC------CBCTTSCBCHHHHHHHTC--
T ss_pred ceEEEEECCc------CCCCCCChhHHHHHHHhhhh
Confidence 9999999765 99999999999999988664
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=3.5e-45 Score=385.16 Aligned_cols=333 Identities=16% Similarity=0.167 Sum_probs=248.8
Q ss_pred CCCC-CCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHH-HHHHHhhcCce
Q 007257 167 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS 244 (611)
Q Consensus 167 ~~~~-~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~ 244 (611)
...+ +++++++|||||||.||+|.++|+++......+...+.. .++..+|++++..|+.|..+.. ..+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3455 899999999999999999999999998776655332211 2678899999999987655554 46667889999
Q ss_pred EEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 007257 245 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 323 (611)
Q Consensus 245 ~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (611)
+++.+. ++..+++.|+++++|+++++|+++..|++........
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------------------------------ 202 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID------------------------------------ 202 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC------------------------------------
Confidence 988865 9999999999999999999999999987654322100
Q ss_pred hhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCc-eeeccCCCccccCccCCCccCeeEEEee
Q 007257 324 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE 402 (611)
Q Consensus 324 ~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~ 402 (611)
..++++|.+++||+++++++.+.+.+.+|+++++.||+||+++. +...... . ...+.+.+++.++++|
T Consensus 203 -------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~-~g~~~~~~~~~v~i~d 271 (436)
T 3qov_A 203 -------PRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE---Q-NGMHFWEDCYLVEIID 271 (436)
T ss_dssp -------TTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT---C-SSEEECTTTEEEEEEC
T ss_pred -------cccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC---C-CeeEEccCceEEEEEE
Confidence 00258999999999999999999999999999999999999654 3332221 1 2356677899999998
Q ss_pred cCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCC------e---EEEEeccCCeEEcC
Q 007257 403 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKIS 473 (611)
Q Consensus 403 ~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG------~---l~~~GR~~d~i~~~ 473 (611)
+++ ..+++.|+.|||+|+|. +...|.++||+|||+|+++++| + +++.||.||+|++
T Consensus 272 -~~~-g~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~- 336 (436)
T 3qov_A 272 -PET-GEPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII- 336 (436)
T ss_dssp -TTT-CSBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-
T ss_pred -CCC-CCCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-
Confidence 333 36777889999999984 2344568999999999999998 5 6999999999998
Q ss_pred CceecCcHHHHHHHhcCcCcceEEEEecCC---CCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHH
Q 007257 474 QGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN 550 (611)
Q Consensus 474 ~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 550 (611)
+|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|+++ +.. . .+.. +..++.+.+.+.|.+
T Consensus 337 ~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~--------~-~~~~---~~~~l~~~l~~~l~~ 403 (436)
T 3qov_A 337 KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS--------T-DNYI---ELEKIRRDIIRQLKD 403 (436)
T ss_dssp TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC--------C-CCHH---HHHHHHHHHHHHHHH
T ss_pred CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc--------c-cchh---hHHHHHHHHHHHHHH
Confidence 899999999999999999999999998664 35899999988 420 0 0000 112344444444433
Q ss_pred HHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchH
Q 007257 551 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN 589 (611)
Q Consensus 551 ~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~ 589 (611)
++ ..|..+.+++. +.+|+|+ ||++|.
T Consensus 404 ~~--------~~p~~i~~v~~----~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 404 EI--------LVTPKVKLVKK----GSLPQSE-GKAVRV 429 (436)
T ss_dssp HH--------SSCCEEEEECT----TCCC--------CE
T ss_pred hc--------CCceEEEEeCC----CcccCcC-CcceEE
Confidence 32 45667888861 3569999 999985
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.2e-44 Score=379.84 Aligned_cols=338 Identities=17% Similarity=0.128 Sum_probs=256.0
Q ss_pred CCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecch-hhHHHHHHHHHHhhcCceE
Q 007257 167 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 245 (611)
Q Consensus 167 ~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~g~~~~~~~l~~G~~~ 245 (611)
...++++++++|||||||.||+|.++|+++......+...+.. .++..+|++++..|+ .|..++...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 4567899999999999999999999999988766544332111 267889999999998 4667766677788899999
Q ss_pred EEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHh
Q 007257 246 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 324 (611)
Q Consensus 246 ~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (611)
++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------ 209 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP------------------------------------ 209 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence 88776 99999999999999999999999999876433211000
Q ss_pred hHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCc-eeeccCCCccccCccCCCccCeeEEEeec
Q 007257 325 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 403 (611)
Q Consensus 325 ~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~~ 403 (611)
.++++|.+++||+++++++.+.+.+.+|+++++.||+||+++. +........ ...+.+.+++.++++|
T Consensus 210 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d- 278 (443)
T 2y4o_A 210 -------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID- 278 (443)
T ss_dssp -------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC-
T ss_pred -------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc-
Confidence 0148999999999999999999999889999999999998543 333222111 1244566889999998
Q ss_pred CCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccC-CeE-----EEEeccCCeEEcCCcee
Q 007257 404 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEY 477 (611)
Q Consensus 404 ~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~d-G~l-----~~~GR~~d~i~~~~G~~ 477 (611)
+++ ..+++.|+.|||+|+|. +++.|.++||+|||+|+++++ |++ ++.||.||+|++ +|++
T Consensus 279 ~~~-g~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~ 344 (443)
T 2y4o_A 279 PVT-GEVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVN 344 (443)
T ss_dssp TTT-CCBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEE
T ss_pred CCC-CCCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEE
Confidence 443 36777889999999983 234456899999999999999 986 899999999997 8999
Q ss_pred cCcHHHHHHHhcCcCcceEEEEecCC---CCeEEEEEecCh--HHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHH
Q 007257 478 VALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCE--EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 552 (611)
Q Consensus 478 v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~vv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 552 (611)
|+|.+||++|.+||+|.+++|++.++ .+.++|+|++.+ +.. .+ ..+..++.+.+.+
T Consensus 345 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~----------~~---~~~~~~l~~~l~~------ 405 (443)
T 2y4o_A 345 VFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAAS----------VT---DGERAALARELQH------ 405 (443)
T ss_dssp ECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTT----------CC---HHHHHHHHHHHHH------
T ss_pred ECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccccc----------ch---hhHHHHHHHHHHH------
Confidence 99999999999999999999887532 358899999876 210 00 0011223333332
Q ss_pred HhCCCCCc-ceeeeEEEecCCCCCCCCccccccccchHHHHH
Q 007257 553 ERNKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 593 (611)
Q Consensus 553 ~~~~l~~~-~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~ 593 (611)
.|+.+ .+|..|.+++ ++++|+|++||++|...++
T Consensus 406 ---~l~~~~~~p~~v~~v~----~~~lP~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 406 ---RIKTMVGVSSGVTVLA----AGGIPATATGKARRVIDRR 440 (443)
T ss_dssp ---HHHHHTCCCCEEEEEC----TTCSCCCTTSCCCSEEECC
T ss_pred ---HHHHHhCCceEEEEeC----CCcccCccCCcceEEEecc
Confidence 23333 3677788774 2456999999999975443
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=8.4e-44 Score=374.71 Aligned_cols=335 Identities=18% Similarity=0.167 Sum_probs=255.3
Q ss_pred CCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecch-hhHHHHHHHHHHhhcCce
Q 007257 166 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGAS 244 (611)
Q Consensus 166 ~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~g~~~~~~~l~~G~~ 244 (611)
....++++++++|||||||.||+|+++|.++......+...+.. .++..+|++++..|+ .|..++...+.++..|++
T Consensus 85 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~ 162 (437)
T 2y27_A 85 FAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLT 162 (437)
T ss_dssp CSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCE
T ss_pred ccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCE
Confidence 34567899999999999999999999999988766544332111 267889999999998 677777777778999999
Q ss_pred EEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 007257 245 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 323 (611)
Q Consensus 245 ~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (611)
+++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 163 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~----------------------------------- 207 (437)
T 2y27_A 163 VIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP----------------------------------- 207 (437)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 988776 99999999999999999999999999876433211000
Q ss_pred hhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCc-eeeccCCCccccCccCCCccCeeEEEee
Q 007257 324 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE 402 (611)
Q Consensus 324 ~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~ 402 (611)
.++++|.+++||+++++++.+.+.+.+|+++++.||+||+++. +........ ...+.+.+++.++++|
T Consensus 208 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d 276 (437)
T 2y27_A 208 --------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID 276 (437)
T ss_dssp --------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC
T ss_pred --------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc
Confidence 0148999999999999999999998889999999999998543 333222111 1245567899999998
Q ss_pred cCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEcc-CCeE-----EEEeccCCeEEcCCce
Q 007257 403 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGE 476 (611)
Q Consensus 403 ~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~-dG~l-----~~~GR~~d~i~~~~G~ 476 (611)
+++ ..+++.|+.|||+|+|. +++.|.++||+|||+|++++ +|++ ++.||.||+|++ +|+
T Consensus 277 -~~~-g~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~ 341 (437)
T 2y27_A 277 -PET-GEVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGV 341 (437)
T ss_dssp -TTT-CCBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTE
T ss_pred -CCC-CCCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCe
Confidence 443 46777889999999983 33446689999999999999 6985 899999999997 999
Q ss_pred ecCcHHHHHHHhcCcCcceEEEEecCC---CCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHH
Q 007257 477 YVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE 553 (611)
Q Consensus 477 ~v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 553 (611)
+|+|.+||++|.+||+|.+++|++.++ .+.++|+|+++++.. .+ ..+..++.+.+.+
T Consensus 342 ~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~----------~~---~~~~~~l~~~l~~------- 401 (437)
T 2y27_A 342 NVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA----------PD---TAAIQVAKQALAY------- 401 (437)
T ss_dssp EECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT----------TC---HHHHHHHHHHHHH-------
T ss_pred EECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc----------ch---hhhHHHHHHHHHH-------
Confidence 999999999999999999988887432 358999999876420 00 0011223333332
Q ss_pred hCCCCCc-ceeeeEEEecCCCCCCCCccccccccchHH
Q 007257 554 RNKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNK 590 (611)
Q Consensus 554 ~~~l~~~-~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~ 590 (611)
.|+.+ .+|..|.+++ ++.+|+|+ ||++|..
T Consensus 402 --~l~~~~~~p~~v~~v~----~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 402 --DIKSLIGVTAVINVLP----VNGIERSV-GKARRVV 432 (437)
T ss_dssp --HHHHHHCCCEEEEECC----TTCSCCCS-SSCCCEE
T ss_pred --HHHHhcCCceEEEEeC----CCCccCCC-CcceEEE
Confidence 34444 3677788774 24569999 9999863
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=2.4e-28 Score=250.89 Aligned_cols=239 Identities=18% Similarity=0.168 Sum_probs=173.7
Q ss_pred CCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecch-hhHHHHHHHHHHhhcCceEE
Q 007257 168 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG 246 (611)
Q Consensus 168 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~g~~~~~~~l~~G~~~~ 246 (611)
..++++++++|||||||.||+|.++|+++...+......+.. .++..+|++++..|+ +|..++...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 467889999999999999999999999999888754332211 267889999999999 99999888777788899444
Q ss_pred EecCChH-----------------------HHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007257 247 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 303 (611)
Q Consensus 247 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (611)
....+|. .+++.++++++|+++++|+++..|++......
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~------------------ 227 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVL------------------ 227 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHH------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhc------------------
Confidence 4444666 78889999999999999999999876421110
Q ss_pred HHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHH-HHc-CCceeeccccCCCCCceeeccCC
Q 007257 304 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPD 381 (611)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~-~~~-~~~v~~~yG~tE~g~~~~~~~~~ 381 (611)
.++ +++|.+++||+++++++.+.+. +.| ++++++.||+||+++++..+..
T Consensus 228 -------------------~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 228 -------------------QMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp -------------------HHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred -------------------ccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 111 3899999999999999999999 898 8999999999999877654321
Q ss_pred CccccCccCCC------ccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEc
Q 007257 382 EMCMVGTAGPV------SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL 455 (611)
Q Consensus 382 ~~~~~~~~G~~------~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~ 455 (611)
.++|.+ .++++++|+| +++ ..+++.|+.|||+|++.... .+ --.|+|||++.+.
T Consensus 280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~-g~~vp~G~~GEl~vt~l~~~------------~~-l~ry~tgD~~~~~ 339 (369)
T 3hgu_A 280 -----TSESQQVIYDSFSPFITYDVVD-SIT-AQTVEYGERGNVIVTHLSPW------------AF-YPRVAERDTAIRL 339 (369)
T ss_dssp -----CTTCSSCEEECCTTTEEEEEEC-TTT-CSBCCTTCEEEEEEEEEETT------------EE-EEEEEEEEEEEEE
T ss_pred -----ccCCCcccccCCCCCeEEEEEC-CCC-CcCCCCCCceEEEEEEcCcc------------cc-cccccCCceEEEe
Confidence 147888 9999999998 433 36778899999999983211 11 1238899998875
Q ss_pred cC--C-------eEEEEeccCCeEEcCCc
Q 007257 456 PN--G-------VVKIIDRKKNLIKISQG 475 (611)
Q Consensus 456 ~d--G-------~l~~~GR~~d~i~~~~G 475 (611)
+. | .+..++|.++..+| .|
T Consensus 340 ~~~~g~~~d~~~~v~~~~~~~~~~~i-~g 367 (369)
T 3hgu_A 340 PGVSGFAGDRLADIEPLKISEGRKVI-EG 367 (369)
T ss_dssp CCSTTCSSCEEEEEEECC-----------
T ss_pred cCCCCCcCcccccceeccccCCCcee-ee
Confidence 43 2 24556777777766 44
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.33 E-value=2.6e-12 Score=105.90 Aligned_cols=98 Identities=15% Similarity=0.074 Sum_probs=64.3
Q ss_pred eccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHH
Q 007257 464 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 540 (611)
Q Consensus 464 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (611)
.|.||||++ +|.||+|.+||++|.+||+|.++++++.++. +.+.++|+..++.. .+.. ...++
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~----------~~~~---~~~~l 66 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFT----------DDYG---RLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCC----------CCHH---HHHHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccc----------cccc---hhhhh
Confidence 489999998 9999999999999999999999998886544 37888888776431 0000 11223
Q ss_pred HHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccch
Q 007257 541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKR 588 (611)
Q Consensus 541 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R 588 (611)
.+.+.+.+.+.+ .+ +..+.+++ ++++|+| +||++|
T Consensus 67 ~~~i~~~l~~~~---gv-----~~~v~~v~----~~~lPrt-sGKi~R 101 (109)
T 3lax_A 67 TREITRQLKDEI---LV-----TPRVKLVP----KGALPKS-EGKAVR 101 (109)
T ss_dssp HHHHHHHHHHHH---SS-----CCEEEEEC----TTCSCCC----CCC
T ss_pred HHHHHHHHHHHh---CC-----ccceEEEc----CCeecCC-CCCcch
Confidence 344444443332 12 33467764 3677998 799987
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.16 E-value=4.4e-11 Score=98.21 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=64.3
Q ss_pred eccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHH
Q 007257 464 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 540 (611)
Q Consensus 464 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (611)
||.||+|++ +|.+++|.+||++|.+||+|.++.+++.++. +.+.+++++ ++.. ..+. .+..++
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~---------~~~~---~~~~~l 66 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLF---------TDDY---GRLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTC---------CCCH---HHHHHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCcc---------ccch---hHHHHH
Confidence 899999997 9999999999999999999998877664432 478888887 4320 0000 012334
Q ss_pred HHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchH
Q 007257 541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN 589 (611)
Q Consensus 541 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~ 589 (611)
.+.+.+.+.+.+ .++ | .+.+++. +++|+| +||++|.
T Consensus 67 ~~~i~~~l~~~~---~~~----~-~v~~v~~----~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 67 TREITRQLKDEI---LVT----P-RVKLVPK----GALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHH---SSC----C-EEEEECT----TCSCCC----CCCE
T ss_pred HHHHHHHHHHhh---CCc----e-EEEEECC----CCccCC-CCceEEE
Confidence 455555554332 232 2 5777752 467999 9999873
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.87 E-value=1.3e-08 Score=107.18 Aligned_cols=137 Identities=19% Similarity=0.191 Sum_probs=84.6
Q ss_pred HcCCc---eeEEEEecCCCCHHHHHHHHHHc-CCcee-eccccCCCCCceeeccCCCccccCccCC-CccCe-eEEEeec
Q 007257 331 RLGGR---LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVYS-ELRLEEV 403 (611)
Q Consensus 331 ~~~~~---l~~i~~~G~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~g~~~~~~~~~~~~~~~~~G~-~~~~~-~v~i~~~ 403 (611)
..-|+ +..++.||. ..-...++..+ +.+++ ..|++||+ .+..+.... ..+...+. .+++. =.++++.
T Consensus 294 ~lWPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg--~~gi~~~p~-~~~~~~~~~L~~~~~ffEFip~ 367 (581)
T 4eql_A 294 RLWPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET--TFGINLDPL-CKPEDVSYTFMPNMSYFEFIPM 367 (581)
T ss_dssp HHSTTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC--EEEECSCTT-SCGGGCCEEECTTSSEEEEEEC
T ss_pred HhCCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc--eeeeccCCC-CCcccCceeecCCcEEEEEEec
Confidence 34467 555556663 33334444444 67777 89999994 222222111 11111221 22332 2344442
Q ss_pred CCCC------CCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEcc----CCeEEEEeccCCeEEcC
Q 007257 404 PEMG------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKIS 473 (611)
Q Consensus 404 ~~~~------~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----dG~l~~~GR~~d~i~~~ 473 (611)
++.. ...+..|+.+||+|+..+ |.|. |++||+.+++. ..++.+.||.++++++
T Consensus 368 ~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~- 430 (581)
T 4eql_A 368 DGGDKNDVVDLEDVKLGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI- 430 (581)
T ss_dssp STTCCSSCEEGGGCCTTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-
T ss_pred cccCCCcEeCHHHcCCCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-
Confidence 2211 122346788999998853 4443 99999999976 3579999999999997
Q ss_pred CceecCcHHHHHHHhcC
Q 007257 474 QGEYVALEYLENVYCVA 490 (611)
Q Consensus 474 ~G~~v~~~~iE~~l~~~ 490 (611)
.|++++..+||++|.+.
T Consensus 431 ~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 431 DSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp SSCCEEHHHHHHHHHHC
T ss_pred eeeECCHHHHHHHHHHH
Confidence 89999999999999743
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.76 E-value=1.3e-07 Score=99.34 Aligned_cols=163 Identities=19% Similarity=0.133 Sum_probs=94.4
Q ss_pred HHcCCceeEE--EEecCCCCHHHHHHHHHHc-CCcee-eccccCCCCCceeeccCCCccccCccC-CCccCe-eEEEeec
Q 007257 330 ARLGGRLRLV--ISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEV 403 (611)
Q Consensus 330 ~~~~~~l~~i--~~~G~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~g~~~~~~~~~~~~~~~~~G-~~~~~~-~v~i~~~ 403 (611)
...-|++++| +.+|. + ..-...++..+ +.+++ ..|++||+ .+.....+.. .++..+ ..+|+. =.++++.
T Consensus 298 ~~lWPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~--~~~~~~~~L~p~~~ffEFiP~ 372 (581)
T 4epl_A 298 PALFPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVTPRL--SPEEATFAVIPNLGYFEFLPV 372 (581)
T ss_dssp HHHCTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCCTTS--CTTTCCEEECTTSCEEEEEEC
T ss_pred HHhCCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccce-eeeeecCCCC--CccccceeecCCcEEEEEEec
Confidence 3455788633 33442 2 23334455444 67777 89999995 2222211211 111112 122332 1233332
Q ss_pred CCCC--------CCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccC----CeEEEEeccCCeEE
Q 007257 404 PEMG--------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKNLIK 471 (611)
Q Consensus 404 ~~~~--------~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~d----G~l~~~GR~~d~i~ 471 (611)
++.. ...+..|+.+||+|+... |.|. |++||+.++..- .++.+.||.+++++
T Consensus 373 ~~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~ 436 (581)
T 4epl_A 373 SETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILS 436 (581)
T ss_dssp -------CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred ccccCCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEE
Confidence 2111 123456788999998853 4443 999999998642 47999999999999
Q ss_pred cCCceecCcHHHHHHHhc------Cc--CcceEEEEecCCC--CeEEEEEecC
Q 007257 472 ISQGEYVALEYLENVYCV------AP--IIEDIWVYGDSLK--SMLVAVVVPC 514 (611)
Q Consensus 472 ~~~G~~v~~~~iE~~l~~------~p--~V~~~~v~~~~~~--~~~~a~vv~~ 514 (611)
+ .|++++..+||+++.+ .. .|.|..+...... .+-+.+.++.
T Consensus 437 ~-~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~ 488 (581)
T 4epl_A 437 I-NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEIS 488 (581)
T ss_dssp S-SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEES
T ss_pred e-eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeec
Confidence 7 8999999999999964 22 3666666653322 3444445553
No 41
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.72 E-value=1.2e-07 Score=99.89 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=93.6
Q ss_pred HcCCcee---EEEEecCCCCHHHHHHHHHHc-CCcee-eccccCCCCCceeeccCCCccccCccC-CCccCe-eEEEeec
Q 007257 331 RLGGRLR---LVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEV 403 (611)
Q Consensus 331 ~~~~~l~---~i~~~G~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~g~~~~~~~~~~~~~~~~~G-~~~~~~-~v~i~~~ 403 (611)
..-|+++ .++.||. ..-...++..+ +.+++ ..|++||+- +.....+.. .++..+ ..+|+. =.++++.
T Consensus 299 ~lWPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~--~p~~~~~~L~p~~~ffEFIP~ 372 (609)
T 4b2g_A 299 RIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNPMS--KPSEVSYTIMPNMAYFEFLPH 372 (609)
T ss_dssp HHSTTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCTTS--CGGGCCEEECTTSCEEEEEEG
T ss_pred HhCCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCccccccee-eeeecCCCC--CcccCceeecCCcEEEEEEec
Confidence 3446744 4455553 33334444444 67777 899999952 222211111 111112 122332 2234432
Q ss_pred CCC------C-------CCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEcc----CCeEEEEecc
Q 007257 404 PEM------G-------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRK 466 (611)
Q Consensus 404 ~~~------~-------~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----dG~l~~~GR~ 466 (611)
++. . ...+..|+.+||+|+... |+|. |++||+.+++. ..++.+.||.
T Consensus 373 ~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~ 436 (609)
T 4b2g_A 373 EHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLYR-------------YRVGDILRVTGFHNSAPQFHFVRRK 436 (609)
T ss_dssp GGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCCS-------------EEEEEEEEEEEEETTEEEEEEEEET
T ss_pred cccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhhh-------------eecCCEEEEeecCCCCcEEEEEEec
Confidence 221 0 123456788999998742 5554 99999999874 4689999999
Q ss_pred CCeEEcCCceecCcHHHHHHHhc------CcC--cceEEEEecCCC--CeEEEEEec
Q 007257 467 KNLIKISQGEYVALEYLENVYCV------API--IEDIWVYGDSLK--SMLVAVVVP 513 (611)
Q Consensus 467 ~d~i~~~~G~~v~~~~iE~~l~~------~p~--V~~~~v~~~~~~--~~~~a~vv~ 513 (611)
++++++ .|+++++.+||++|.+ ..+ |.|..+...... .+-+.+.++
T Consensus 437 ~~~l~~-~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl 492 (609)
T 4b2g_A 437 NVLLSI-DSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWEL 492 (609)
T ss_dssp TCCBCS-SSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEE
T ss_pred CCeEEc-cccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEE
Confidence 999997 8999999999999963 223 556665543222 244444444
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=93.34 E-value=0.55 Score=48.02 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=80.5
Q ss_pred CCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCEEeeC
Q 007257 7 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL 82 (611)
Q Consensus 7 pd~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~~~l 82 (611)
++.++.+..+ -|.+|.. -.+|...+...+..++..+...|+.++|++...++.+ ...+...++++..|+.++++
T Consensus 89 ~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 89 QDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp GGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred hhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 4566654442 4556644 4679999988888888888888999999999988863 33455678889999999877
Q ss_pred CCCCChhHHHHHHhhcCccEEEEcchhHHHHh
Q 007257 83 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL 114 (611)
Q Consensus 83 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~ 114 (611)
+.. +.+.+...|++.++.+++..+.....+.
T Consensus 167 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 197 (437)
T 2y27_A 167 GGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIA 197 (437)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHhCCCEEEECHHHHHHHH
Confidence 654 7888999999999999999887766553
No 43
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=93.08 E-value=0.47 Score=48.57 Aligned_cols=123 Identities=8% Similarity=-0.046 Sum_probs=89.4
Q ss_pred CCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCEEeeCC
Q 007257 8 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY 83 (611)
Q Consensus 8 d~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~~~l~ 83 (611)
+.+|++.-+ -|.+|.. -.+|...+...+..++..+...|+.++|++...++-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 455554442 4555544 4679999999898888888888999999999988753 344556788899999988876
Q ss_pred CCCChhHHHHHHhhcCccEEEEcchhHHHHhccccc-----cccCccEEEEecCC
Q 007257 84 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL 133 (611)
Q Consensus 84 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~ 133 (611)
+. .++.+...|++.++.+++........+...... ....++.++.-.+.
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 54 678888999999999999988877665433211 13556666665543
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=93.07 E-value=0.61 Score=47.80 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=80.7
Q ss_pred CCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCEEeeC
Q 007257 7 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL 82 (611)
Q Consensus 7 pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~~~l 82 (611)
++.++.+..+ -|.+|..+ .+|...+...+..++..+...|+.++|++...++.+ ...+...++++..|+.++++
T Consensus 91 ~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4555644432 46666554 678999988888888888888999999999988864 33455678888999998887
Q ss_pred CCCCChhHHHHHHhhcCccEEEEcchhHHHHh
Q 007257 83 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL 114 (611)
Q Consensus 83 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~ 114 (611)
++. ..+.+...|++.++.+++........+.
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 199 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLI 199 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHH
Confidence 664 7888889999999999999887766553
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=89.90 E-value=3.4 Score=42.91 Aligned_cols=121 Identities=7% Similarity=0.014 Sum_probs=85.0
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-HHHHHHHHHhcCCEEeeC
Q 007257 6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL 82 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~~~l 82 (611)
.||.+|++.-+ -|.+|..+ .+|+..+...+..... ..|+.++|++...+|-.-. .+..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 46777766553 45566544 6788888776665543 3488999999988886533 244567788899998877
Q ss_pred CCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecC
Q 007257 83 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 132 (611)
Q Consensus 83 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 132 (611)
+ ..+++.+...+++.++.+++........+..........++.++...+
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~ 284 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGA 284 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSS
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCC
Confidence 5 467889999999999999999988877665543333235566655443
No 46
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=88.51 E-value=2 Score=42.66 Aligned_cols=122 Identities=14% Similarity=0.046 Sum_probs=79.1
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch--hHHHHHHHHHhcCCEEee
Q 007257 6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVP 81 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~~~ 81 (611)
.++.++.+..+ -|.+|..+ .+|...+...+...+..+...|+.++|++..++|-+. -.....+++...|+.+++
T Consensus 89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 35665665543 46666554 5688888888877777777789999999999888633 233445555888985555
Q ss_pred CCCCCChh-----------------------HHHHHHhhcCccEEEEcchhHHHHhcccc---ccccCccEEEEec
Q 007257 82 LYDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFT 131 (611)
Q Consensus 82 l~~~~~~~-----------------------~l~~~l~~~~~~~li~~~~~~~~~~~~~~---~~~~~~~~i~~~~ 131 (611)
.. +.+. .+...+++.++.+++........+.+... .....++.++.-.
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gG 240 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGG 240 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEES
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECC
Confidence 43 3344 66678999999999999887776654321 1224455555544
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=84.76 E-value=5.4 Score=41.94 Aligned_cols=121 Identities=12% Similarity=0.001 Sum_probs=82.7
Q ss_pred CCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH--HHHHHHHHhcCCEEeeCC
Q 007257 8 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICVPLY 83 (611)
Q Consensus 8 d~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~~~l~ 83 (611)
+.+|++.-+ -|.+|.. -.+|.+.+...+......+...++.++|++...+|-+-.+ ...+++.+ .|+..+.++
T Consensus 192 ~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMNS--SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEECC--SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEeC--CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 677766553 4555543 4789998877766655443335788999998888765433 33456777 999988775
Q ss_pred CCCChhHHHHHHhhcCccEEEEcchhHHHHhcccc---ccccCccEEEEecC
Q 007257 84 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 132 (611)
Q Consensus 84 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~---~~~~~~~~i~~~~~ 132 (611)
...++.+...+++.++.+++........+..... ..+..++.++.-..
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 319 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGA 319 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSS
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCc
Confidence 5678899999999999999999887776644321 13345666655443
No 48
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=84.63 E-value=11 Score=39.32 Aligned_cols=122 Identities=7% Similarity=-0.064 Sum_probs=83.7
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH--HH-HHHHHHhcCCEEe
Q 007257 6 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VE-AMEACNALSLICV 80 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~-~~lA~~~~G~~~~ 80 (611)
.|+.+|++.-+ -|.+|.. -.+|...+...+..... ..++.++|++...+|-+-.+ .. .+++.+..|+.++
T Consensus 180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 45666666553 4555544 47899888776655443 34788999998888865433 33 4788889999988
Q ss_pred eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccc---cccccCccEEEEecCC
Q 007257 81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 133 (611)
Q Consensus 81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~ 133 (611)
..+ ...++.+...+++.++.+++........+.... ...++.++.++.-.+.
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 765 467888999999999999999887766554322 2234566666655443
No 49
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=83.24 E-value=6.8 Score=41.97 Aligned_cols=122 Identities=13% Similarity=0.022 Sum_probs=87.2
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHhcCCEEeeC
Q 007257 6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 82 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l 82 (611)
.||.+|++.-+ -|.+|..+ .+|.+.+...+. .....++.++|++...+|-+-+. +..+++.+..|+.++..
T Consensus 162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 36777765553 56677655 678877654332 22334889999999998877553 45578888999988876
Q ss_pred C-CCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCC
Q 007257 83 Y-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 133 (611)
Q Consensus 83 ~-~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 133 (611)
+ ....++.+...+++.++.+++........+..........++.++.-.+.
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDI 287 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCc
Confidence 4 35678899999999999999999887776655444556677777776654
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=81.64 E-value=14 Score=38.39 Aligned_cols=120 Identities=8% Similarity=-0.086 Sum_probs=79.5
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHH--HHHHHHHhcCCEEee
Q 007257 6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP 81 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~~~ 81 (611)
.|+.+|++.-+ -|.+|..+ .+|...+...+...+.. .++.++|++...+|-.-.+- ..+++++ .|+..+.
T Consensus 168 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~ 241 (517)
T 3r44_A 168 GGDDNLFIMYT--SGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLIS 241 (517)
T ss_dssp CTTSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEE
T ss_pred CCCCeEEEEEC--CcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEE
Confidence 45666665553 46666554 77888887776665544 38899999998888764432 2345555 8888887
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccc---cccccCccEEEEecC
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 132 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~~~~~~i~~~~~ 132 (611)
.+ ...+..+...+.+.++.++.........+.... ....+.++.++.-..
T Consensus 242 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe 294 (517)
T 3r44_A 242 MP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGA 294 (517)
T ss_dssp CS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSS
T ss_pred eC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCC
Confidence 64 578889999999999999999887776554321 123345666655443
No 51
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=79.85 E-value=11 Score=39.09 Aligned_cols=122 Identities=9% Similarity=-0.070 Sum_probs=81.9
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-HHHHHHHHHhcCCEEeeC
Q 007257 6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL 82 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~~~l 82 (611)
.|+.+|++.-+ -|.+|..+ .+|+..+...+..... ..++.++|++...+|-+-. .+..+++++..|+..+.+
T Consensus 142 ~~~d~a~i~~T--SGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIYT--SGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEEE--CC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 45666665543 45566554 6788888766554443 4588999999998887643 345678889999999888
Q ss_pred CCC--CChhHHHHHHhhcCccEEEEcchhHHHHhccc---cccccCccEEEEecC
Q 007257 83 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 132 (611)
Q Consensus 83 ~~~--~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~~~~~~i~~~~~ 132 (611)
++. ..+..+...+++.++.+++........+.... ....+.++.++....
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~ 271 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGE 271 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSS
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecC
Confidence 753 46788889999999999999888776654332 123345666655443
No 52
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=79.42 E-value=11 Score=39.39 Aligned_cols=103 Identities=11% Similarity=-0.034 Sum_probs=73.8
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH--HH-HHHHHHhcCCEEe
Q 007257 6 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VE-AMEACNALSLICV 80 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~-~~lA~~~~G~~~~ 80 (611)
.||.+|++.-+ -|.+|.. -.+|...+...+...+.. .|+.++|++...+|.+-.+ .. .+++.+..|+.++
T Consensus 189 ~~~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQLS--GGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEEC--CC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEEC--CCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 45677766553 4555554 477998887776665543 4889999999888755433 32 4788889999988
Q ss_pred eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHh
Q 007257 81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL 114 (611)
Q Consensus 81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~ 114 (611)
..+. ..+..+...+++.++..+.........+.
T Consensus 264 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 296 (544)
T 3o83_A 264 MAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWL 296 (544)
T ss_dssp ECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred ECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHH
Confidence 7654 57788889999999999999887666553
No 53
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=79.37 E-value=15 Score=39.08 Aligned_cols=122 Identities=10% Similarity=-0.055 Sum_probs=83.1
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch--hHHH-HHHHHHhcCCEEe
Q 007257 6 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVE-AMEACNALSLICV 80 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--~~~~-~~lA~~~~G~~~~ 80 (611)
.||.+|++.-+ -|.+|.. -.+|...+...+...... .++.++|++...+|.+. +... .+++++..|+.++
T Consensus 182 ~~~~~a~ii~T--SGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v 256 (617)
T 3rg2_A 182 PADEVAYFQLS--GGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVV 256 (617)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEE
T ss_pred CCCCeEEEEEC--CCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEE
Confidence 35667665542 4666654 477888887766655443 37889999999888543 3332 4788888899888
Q ss_pred eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccc-----cccccCccEEEEecCC
Q 007257 81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD-----CRSAQRLRVMVCFTSL 133 (611)
Q Consensus 81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~ 133 (611)
..+. .....+...+++.++.++.........+.... ......++.++.-.+.
T Consensus 257 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~ 313 (617)
T 3rg2_A 257 LAAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313 (617)
T ss_dssp ECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSC
T ss_pred EeCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCc
Confidence 7654 56778888999999999999887766553321 1134566666665543
No 54
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=78.95 E-value=13 Score=38.42 Aligned_cols=122 Identities=8% Similarity=-0.119 Sum_probs=83.9
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHhcCCEEeeC
Q 007257 6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 82 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l 82 (611)
.|+.+|++.-+ -|.+|..+ .+|...+...+..++. ..++.++|++...+|-+-.+ +..+++++..|+.++.+
T Consensus 141 ~~~~~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIYT--SGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEEE--CCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 35566665543 46666554 6788888766655443 45788999999988876543 45578889999998887
Q ss_pred CCC--CChhHHHHHHhhcCccEEEEcchhHHHHhccc---cccccCccEEEEecC
Q 007257 83 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 132 (611)
Q Consensus 83 ~~~--~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~~~~~~i~~~~~ 132 (611)
+.. ..+..+...+++.++.+++........+.... ....+.++.++...+
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~ 270 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGE 270 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSS
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecC
Confidence 653 46778889999999999999988776654432 223345555555443
No 55
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=78.44 E-value=8.7 Score=40.56 Aligned_cols=122 Identities=10% Similarity=0.002 Sum_probs=85.9
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch-hHHHHHHHHHhcCCEEeeC
Q 007257 6 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP-QWVEAMEACNALSLICVPL 82 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~-~~~~~~lA~~~~G~~~~~l 82 (611)
.|+.+|++.-+ -|.+|.. -.+|...+...... ....++.++|++...+|-+- -+...+++.+..|+.++.+
T Consensus 212 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMFT--SGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEECC--SSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 46677766553 4555544 47788877433221 22347889999999888754 3455678888999988877
Q ss_pred CC-CCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCC
Q 007257 83 YD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 133 (611)
Q Consensus 83 ~~-~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 133 (611)
+. ...+..+...+++.++.++.........+..........++.++.-...
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEP 337 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEeccc
Confidence 64 4677889999999999999999888777765555556677777766543
No 56
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=78.25 E-value=11 Score=39.67 Aligned_cols=123 Identities=8% Similarity=-0.073 Sum_probs=80.9
Q ss_pred CCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-HHHHHHHHHhcCCEEeeCC
Q 007257 7 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPLY 83 (611)
Q Consensus 7 pd~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~~~l~ 83 (611)
++.+|++.-+ -|.+|.. -.+|.+.+...+......+...++.++|++...+|-+-. .+...++.+..|+.++.++
T Consensus 189 ~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 266 (550)
T 3rix_A 189 DKTIALIMNS--SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY 266 (550)
T ss_dssp TTSEEEEEEC-------CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCEEEEEEC--CCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC
Confidence 3556655442 4555544 467888877666555444444578899999888886643 2455677788999988774
Q ss_pred CCCChhHHHHHHhhcCccEEEEcchhHHHHhcccc---ccccCccEEEEecC
Q 007257 84 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 132 (611)
Q Consensus 84 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~---~~~~~~~~i~~~~~ 132 (611)
...++.+...+++.++.+++........+..... ..+..++.++.-..
T Consensus 267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 317 (550)
T 3rix_A 267 -RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 317 (550)
T ss_dssp -SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSS
T ss_pred -CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecC
Confidence 5678889999999999999999887776544321 23355666665443
No 57
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=76.58 E-value=14 Score=39.07 Aligned_cols=122 Identities=3% Similarity=-0.176 Sum_probs=83.5
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHH--HHHHHHHhcCCEEee
Q 007257 6 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP 81 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~~~ 81 (611)
.|+.+|++.-+ -|.+|.. -.+|+..+...+...+. ..++.++|++...+|-+-.+- ..+++.+..|+..+.
T Consensus 165 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQYT--SGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEEC--SSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--cCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 46677766553 4556654 47899988877666544 458899999999988775543 337888899999888
Q ss_pred CCCCC---ChhHHHHHHhhcCccEEEEcchhHHHHhccc------cccccCccEEEEecC
Q 007257 82 LYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPD------CRSAQRLRVMVCFTS 132 (611)
Q Consensus 82 l~~~~---~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~------~~~~~~~~~i~~~~~ 132 (611)
.++.. .+..+...+++.++.++.........+.... ...+..++.++.-..
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~ 299 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAE 299 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSS
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCC
Confidence 76542 5678888999999999988776555443221 123355666665443
No 58
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=76.30 E-value=31 Score=35.50 Aligned_cols=119 Identities=8% Similarity=-0.087 Sum_probs=75.2
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHH-HHhcCCEEee
Q 007257 6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEA-CNALSLICVP 81 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA-~~~~G~~~~~ 81 (611)
.|+.+|++.-+ -|.+|..+ .+|...+...+..... ..++.++|++...+|-.-.+ +...+. ++..|..++
T Consensus 158 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~- 231 (509)
T 3ivr_A 158 GAADGFVIIHT--AAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVI- 231 (509)
T ss_dssp CTTSEEEEEEE--EC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE-
T ss_pred CccccEEEEeC--CCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEE-
Confidence 34555555442 46666654 6788888776665544 34889999999988865433 233344 444444444
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccc-cccccCccEEEEec
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD-CRSAQRLRVMVCFT 131 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~i~~~~ 131 (611)
+. ...++.+...+++.++.+++........+.... ...+..++.++...
T Consensus 232 ~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g 281 (509)
T 3ivr_A 232 AA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLD 281 (509)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEEC
T ss_pred ec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccC
Confidence 43 678899999999999999998887776654432 22334555555433
No 59
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=76.20 E-value=11 Score=38.88 Aligned_cols=121 Identities=13% Similarity=0.066 Sum_probs=80.8
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCC--CCCCEEEEEcCCchhH--HHHHHHHHhcCCEE
Q 007257 6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGA--EPGCRVGIYGANCPQW--VEAMEACNALSLIC 79 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv--~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~ 79 (611)
.|+.+|++.-+ -|.+|..+ .+|.+.+...+..++. ..|+ .++|++...+|-.-.+ ...+++.+..|+.+
T Consensus 151 ~~~~~a~i~~T--SGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 225 (504)
T 1t5h_X 151 EPAQPAFIFYT--SGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225 (504)
T ss_dssp CTTSEEEEEEC--CC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEE
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceE
Confidence 46677766553 45555444 6788888766555433 3477 7889888888765443 24578888999998
Q ss_pred eeCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccc-----cccccCccEEEEecC
Q 007257 80 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD-----CRSAQRLRVMVCFTS 132 (611)
Q Consensus 80 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~ 132 (611)
+..+. ..+..+...+++.++.+++..+.....+.... ......++.++.-..
T Consensus 226 v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~ 282 (504)
T 1t5h_X 226 VVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGA 282 (504)
T ss_dssp EECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCT
T ss_pred EeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCC
Confidence 88754 67888899999999999999888776664322 113455666665443
No 60
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=75.23 E-value=12 Score=39.13 Aligned_cols=125 Identities=10% Similarity=-0.060 Sum_probs=85.1
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchh--HHHHHHHHHhcCCEEe
Q 007257 6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICV 80 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~~ 80 (611)
.|+.+|++.-+ -|.+|..+ .+|.+.+...+........ ..++.++|++...+|-.-. +...+++.+..|+.++
T Consensus 176 ~~~d~a~i~~T--SGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v 253 (536)
T 3ni2_A 176 SPDDVVALPYS--SGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPIL 253 (536)
T ss_dssp CTTSEEECCEE--CTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEE
T ss_pred CccCEEEEEcC--CCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEE
Confidence 46777765543 46666655 7788888766554433222 2378899999888876533 3345678888899888
Q ss_pred eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccc---cccccCccEEEEecCC
Q 007257 81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 133 (611)
Q Consensus 81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~ 133 (611)
..+ ....+.+...+++.++.++.........+.... ...+..++.++.-...
T Consensus 254 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~ 308 (536)
T 3ni2_A 254 IMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAP 308 (536)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSC
T ss_pred EcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCC
Confidence 775 467888999999999999999888777665432 2234566666665543
No 61
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=73.03 E-value=19 Score=37.92 Aligned_cols=123 Identities=11% Similarity=-0.079 Sum_probs=81.5
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHH--HHHHHHHhcCCEEee
Q 007257 6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP 81 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~~~ 81 (611)
.|+.+|++.-+ -|.+|..+ .+|+. +..... +......|+.++|++...+|.+-.+- ..+++.+..|+..+.
T Consensus 204 ~~~d~a~i~~T--SGTTG~PKgV~~sh~-~~~~~~--~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 204 GSQEASAIYFT--SGTSGLPKMAEHSYS-SLGLKA--KMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp BTTSEEEEEEC--CCSSSSCCEEEEEHH-HHHHHH--HHHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred CCCCcEEEEEC--CCCCCCCCEEEechH-HHHhhh--hhhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 45666766553 45566544 67777 433111 11123458899999988888765433 356788888988877
Q ss_pred CCC-CCChhHHHHHHhhcCccEEEEcchhHHHHhcccc--ccccCccEEEEecCC
Q 007257 82 LYD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC--RSAQRLRVMVCFTSL 133 (611)
Q Consensus 82 l~~-~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~ 133 (611)
.+. ...+..+...+++.++.+++........+..... ...+.++.++.....
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~ 333 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGES 333 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSC
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCc
Confidence 653 6788999999999999999999887777654321 123556666665543
No 62
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=72.43 E-value=14 Score=36.21 Aligned_cols=117 Identities=19% Similarity=0.092 Sum_probs=75.4
Q ss_pred CCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-HHHHHHHHHhcCCEEeeCC
Q 007257 7 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPLY 83 (611)
Q Consensus 7 pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~~~l~ 83 (611)
+|.+|++.-+ -|.+|..+ .+|++.+...+..++. ..+++++|++...+|-+-. .+..++..+..|+..+..+
T Consensus 36 ~d~~a~Il~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHT--SGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEE--ECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEEC--CcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 3566665442 46677654 7899988776655544 3488999999988886533 3445566677788777766
Q ss_pred CCCChhHHHHHHhhcCccEEEEcchhHHHHhccc--cccccCccEEEEec
Q 007257 84 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD--CRSAQRLRVMVCFT 131 (611)
Q Consensus 84 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~--~~~~~~~~~i~~~~ 131 (611)
+.... ...+++.++.++...+.....+.... ...+..++.++.-.
T Consensus 111 ~~~~~---~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG 157 (358)
T 4gs5_A 111 PTANP---LAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGG 157 (358)
T ss_dssp CCSCT---TTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECS
T ss_pred ccccH---HHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcc
Confidence 54332 34678889999999887766654322 22335555555544
No 63
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=71.69 E-value=14 Score=38.73 Aligned_cols=123 Identities=12% Similarity=-0.112 Sum_probs=80.5
Q ss_pred CCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHhcCCEEeeCC
Q 007257 7 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPLY 83 (611)
Q Consensus 7 pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l~ 83 (611)
|+.+|++.-+ -|.+|..+ .+|...+...+.... .....++.++|++...+|-.-.+ +..+++++..|+..+..+
T Consensus 175 ~~~~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~ 251 (541)
T 1v25_A 175 ERAACGMAYT--TGTTGLPKGVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPG 251 (541)
T ss_dssp TTSEEEEEEE--CSSSSSCEEEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECT
T ss_pred CCCcEEEEEC--CCCCCCCcEeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeC
Confidence 4566654432 46666655 678887754433210 11234788999998888764332 234577788899998887
Q ss_pred CCCChhHHHHHHhhcCccEEEEcchhHHHHhcccc---ccccCccEEEEecC
Q 007257 84 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 132 (611)
Q Consensus 84 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~---~~~~~~~~i~~~~~ 132 (611)
+..+++.+...+++.++.+++........+..... ..+..++.++.-..
T Consensus 252 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 303 (541)
T 1v25_A 252 PRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGS 303 (541)
T ss_dssp TCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSS
T ss_pred CCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCC
Confidence 77789999999999999999998877665543221 23355666665443
No 64
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=69.92 E-value=24 Score=37.91 Aligned_cols=123 Identities=9% Similarity=0.008 Sum_probs=82.6
Q ss_pred CCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHH--HHHHHHHhcCCEEeeC
Q 007257 7 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPL 82 (611)
Q Consensus 7 pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~~~l 82 (611)
|+.+|++.-+ -|.+|..+ .+|.+.+...+.... -...+++++|++...++-+-..- ..+++.+..|+..+..
T Consensus 255 ~~d~a~ilyT--SGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 255 AEDPLFILYT--SGSTGKPKGVLHTTGGYLVYAATTF--KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp TTSEEEEEEE--CCSSSSCEEEEEESHHHHHHHHHHH--HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCCEEEEec--cCCCCCCceEEECchHHHHHHHHHH--HHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 5666665543 46666655 567776654432211 12357899999988877664432 4567889999998887
Q ss_pred CCC---CChhHHHHHHhhcCccEEEEcchhHHHHhcccc-----ccccCccEEEEecCC
Q 007257 83 YDT---LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTSL 133 (611)
Q Consensus 83 ~~~---~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~ 133 (611)
+.. ..++.+..++++.++.++++.......+..... ..+..++.++...+.
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~ 389 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP 389 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSC
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCC
Confidence 642 467889999999999999999888776654332 134566777665543
No 65
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=67.82 E-value=23 Score=37.14 Aligned_cols=119 Identities=10% Similarity=-0.020 Sum_probs=76.6
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHhcCCEEeeC
Q 007257 6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 82 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l 82 (611)
.|+.+|++.-+ -|.+|..+ .+|.+.+...+...+ ...++.++|++..++|-+... +..++..+..|+..+.+
T Consensus 180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 254 (563)
T 1amu_A 180 KSTDLAYVIYT--SGTTGNPKGTMLEHKGISNLKVFFE---NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYII 254 (563)
T ss_dssp CTTSEEEEEEE--C-----CEEEEEESHHHHHHHHHHH---HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEc
Confidence 35566665543 45566554 678888765544332 334889999999888766443 34567788899998877
Q ss_pred CCC--CChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecC
Q 007257 83 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 132 (611)
Q Consensus 83 ~~~--~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 132 (611)
+.. .....+...+++.++.++.........+.. .....++.++.-..
T Consensus 255 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~---~~~~~lr~~~~gG~ 303 (563)
T 1amu_A 255 LKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP---ERILSIQTLITAGS 303 (563)
T ss_dssp CHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT---TTCCSCSEEEEESS
T ss_pred ChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh---cccccccEEEEEEe
Confidence 643 467788889999999999988776554432 22355666665544
No 66
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=67.67 E-value=38 Score=35.26 Aligned_cols=107 Identities=9% Similarity=-0.052 Sum_probs=76.6
Q ss_pred CCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhcCceEEEe
Q 007257 169 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 248 (611)
Q Consensus 169 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 248 (611)
.|+.+|++....+..+. ..-.+|...+...+..+...+... ++..+|++...++-+. -.....+.++..|+..+.+
T Consensus 32 ~p~~~A~~~~~~~~~~~-~~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSE-FPESMNFLEICEVTKKLASGISRK--GVRKGEHVGVCIPNSI-DYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCCS-SCSEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCccccc-ccceeeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCH-HHHHHHHHHHHhCCEEEcc
Confidence 35677776553221111 124688888888887777666433 7889999998887653 2233456678899999888
Q ss_pred cC--ChHHHHHHHhhhcCeEEecchHHHHHHHH
Q 007257 249 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 279 (611)
Q Consensus 249 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~ 279 (611)
+. ....+...++..++++++..+.....+..
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 76 88999999999999999999887766543
No 67
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=66.78 E-value=33 Score=36.84 Aligned_cols=122 Identities=10% Similarity=-0.070 Sum_probs=80.2
Q ss_pred CCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHH--HHHHHHHhcCCEEeeC
Q 007257 7 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPL 82 (611)
Q Consensus 7 pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~~~l 82 (611)
|+.+|++.-+ -|.+|..+ .+|...+...+... .-...++.++|++...++-+-..- ..+++.+..|+..+..
T Consensus 261 ~~d~a~ilyT--SGTTG~PKgV~~sh~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~ 336 (663)
T 1ry2_A 261 SEDPLFLLYT--SGSTGAPKGVQHSTAGYLLGALLT--MRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVF 336 (663)
T ss_dssp TTSCCEEEEE--CCSSSSCEEEEECSHHHHHHHHHH--HHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEE
T ss_pred CCCceEEEec--cCCCCCCceEEEchhHHHHHHHHH--HHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEE
Confidence 5666666553 46667665 45666654333221 112358899999888777654332 4567888999988877
Q ss_pred CCC---CChhHHHHHHhhcCccEEEEcchhHHHHhcccc-----ccccCccEEEEecC
Q 007257 83 YDT---LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTS 132 (611)
Q Consensus 83 ~~~---~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~ 132 (611)
+.. ..++.+..++++.++.++++.......+..... ..+..++.++...+
T Consensus 337 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 337 EGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGE 394 (663)
T ss_dssp CSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSS
T ss_pred CCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcC
Confidence 642 467889999999999999999888777654332 13355666665444
No 68
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=66.03 E-value=24 Score=37.16 Aligned_cols=123 Identities=9% Similarity=-0.111 Sum_probs=80.2
Q ss_pred CCCCCceeeeccccCCCCCceEE--eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHH--HHHHHHHhcCCEEee
Q 007257 6 YPGNRMLGWRPFVDGKFGPYVWK--TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP 81 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~~~~--Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~~~ 81 (611)
.|+.+|++.-+ -|.+|..+-+ |...+... +.......++.+++++...++.+.... ..+++.+..|+.++.
T Consensus 223 ~~~d~a~i~~T--SGTTG~PKgV~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 297 (580)
T 3etc_A 223 KNEDICLVYFS--SGTAGFPKMVEHDNTYPLGH---ILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFV 297 (580)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEETTHHHHH---HHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEE
T ss_pred CCCCcEEEEEe--CCCCCCccEEEeccHHHHHH---HHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEE
Confidence 46677765543 5677766644 44433222 222222348889999888877765433 346888999999887
Q ss_pred CC-CCCChhHHHHHHhhcCccEEEEcchhHHHHhcccc--ccccCccEEEEecCC
Q 007257 82 LY-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC--RSAQRLRVMVCFTSL 133 (611)
Q Consensus 82 l~-~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~ 133 (611)
.+ ....++.+...+++.++.+++........+..... ..+..++.++...+.
T Consensus 298 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~ 352 (580)
T 3etc_A 298 YDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEP 352 (580)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSC
T ss_pred ecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCC
Confidence 75 56788899999999999999998887776654321 123456666655443
No 69
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=63.35 E-value=45 Score=29.83 Aligned_cols=53 Identities=6% Similarity=-0.171 Sum_probs=37.5
Q ss_pred CcEEEEecch-hhHHHHHHHHH-HhhcCceEEEecC--ChHHHHHHHhhhcCeEEec
Q 007257 217 DDVYLSFLPL-AHILDRVIEEY-FFRRGASVGYYHG--DLNALRDDLMELKPTLLAG 269 (611)
Q Consensus 217 ~~~~l~~~p~-~~~~g~~~~~~-~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~ 269 (611)
+.+++.+.+- .|..|....-. .-..|..++.... +++.+++.+.+++++++..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 4444544444 37777766444 4566777777655 8999999999999998777
No 70
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=63.23 E-value=48 Score=34.10 Aligned_cols=103 Identities=10% Similarity=-0.094 Sum_probs=72.4
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh--HHHHHHHHHhcCCEEee
Q 007257 6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVP 81 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~~~ 81 (611)
.|+.+|++.-+ -|.+|..+ .+|...+...+..++..+ ++.++|++...+|..-. ++..+++.+..|+.++.
T Consensus 153 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVYT--SGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--CCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45666665543 46666554 788998888777666554 78899998887775432 33457888899999887
Q ss_pred CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhc
Q 007257 82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 115 (611)
Q Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~ 115 (611)
.+ ....+.+...+ +.++..++........+..
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 74 46667777777 6789999988876665533
No 71
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=62.82 E-value=19 Score=42.33 Aligned_cols=122 Identities=9% Similarity=-0.051 Sum_probs=85.9
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHhcCCEEeeC
Q 007257 6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 82 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l 82 (611)
.|+.+|++.-+ -|++|..| .+|.+.+... .......++.++|++..+.+-+.+. +.-+++.+..|+.++..
T Consensus 605 ~~~~~ayiiyT--SGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMYT--SGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 46777766553 56677655 6788777532 1222334888999999888887664 44578888999998887
Q ss_pred CC--CCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCC
Q 007257 83 YD--TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 133 (611)
Q Consensus 83 ~~--~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 133 (611)
++ ...+..+...+.+.++.+++........+..........++.+++-.+.
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~ 731 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGER 731 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSC
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCC
Confidence 75 3577899999999999999998887776644333334567777766544
No 72
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=59.30 E-value=29 Score=35.92 Aligned_cols=104 Identities=9% Similarity=-0.047 Sum_probs=70.2
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHH-HHHHHHHHHHHH-HcCCCCCCEEEEEcCCchhHH--HHHHHHHhcCCEE
Q 007257 6 YPGNRMLGWRPFVDGKFGPY--VWKTYKEV-YEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWV--EAMEACNALSLIC 79 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~ql-~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~ 79 (611)
.||.+|++.-+ -|.+|.. -.+|+..+ ..... ... ..++.++|++...+|-.-.+- ..++..+..|+..
T Consensus 181 ~~~d~a~i~~T--SGTTG~PKgv~~sh~~l~~~~~~----~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~ 254 (529)
T 2v7b_A 181 GCDDIAFWLYS--SGSTGKPKGTVHTHANLYWTAEL----YAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATA 254 (529)
T ss_dssp CTTSEEEEEEC-------CCCEEEEEHHHHHHHHHH----TCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEE
T ss_pred CCCCeEEEEEC--CCCCCCCceEEEEhhHHHHHHHH----HhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEE
Confidence 45666665542 3555544 46788876 32221 122 237889999988888765543 3456778899998
Q ss_pred eeCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhc
Q 007257 80 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 115 (611)
Q Consensus 80 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~ 115 (611)
+.+++...++.+...+.+.++.+++........+..
T Consensus 255 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 290 (529)
T 2v7b_A 255 ILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLV 290 (529)
T ss_dssp ECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHT
T ss_pred EEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHh
Confidence 888777888999999999999999998887766544
No 73
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=58.59 E-value=65 Score=32.61 Aligned_cols=107 Identities=12% Similarity=-0.000 Sum_probs=76.0
Q ss_pred CCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhcCceEEEe
Q 007257 169 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 248 (611)
Q Consensus 169 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 248 (611)
.|+.+|++.........-....+|...+...+..+...+... +. .+|++...++-.. -.....+.++..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~-e~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGL-EYVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcH-HHHHHHHHHHHhCcEEEee
Confidence 467788776653221112336789999998888888777543 34 7899888887653 2233456678889998887
Q ss_pred cC-----ChHHHHHHHhhhcCeEEecchHHHHHHHH
Q 007257 249 HG-----DLNALRDDLMELKPTLLAGVPRVFEKIHE 279 (611)
Q Consensus 249 ~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~ 279 (611)
+. ....+...++..++.+++..+.....+..
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 53 46788999999999999999887766543
No 74
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=57.94 E-value=36 Score=35.00 Aligned_cols=99 Identities=14% Similarity=0.025 Sum_probs=72.1
Q ss_pred CCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhcCceEEEec
Q 007257 170 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 249 (611)
Q Consensus 170 ~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 249 (611)
|+.+++++...+ +-.+|...+...+..+...+... ++..+|++...++-+. -.....+.++..|+..+.++
T Consensus 14 p~~~a~~~~~~~------~~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~ 84 (503)
T 4fuq_A 14 DDPHKLAIETAA------GDKISYAELVARAGRVANVLVAR--GLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLN 84 (503)
T ss_dssp SCTTSEEEEETT------CCEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEecCC------CcEEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecC
Confidence 444555554432 13589998888888777666433 7889999998888663 22334566788999988887
Q ss_pred C--ChHHHHHHHhhhcCeEEecchHHHHHH
Q 007257 250 G--DLNALRDDLMELKPTLLAGVPRVFEKI 277 (611)
Q Consensus 250 ~--~~~~~~~~i~~~~~t~l~~~p~~~~~l 277 (611)
. ....+...+++.++.++++.+.....+
T Consensus 85 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 114 (503)
T 4fuq_A 85 TAYTLHELDYFITDAEPKIVVCDPSKRDGI 114 (503)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEECGGGTTTT
T ss_pred CCCCHHHHHHHHHhcCCcEEEECchhhHHH
Confidence 7 889999999999999999988765443
No 75
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=57.67 E-value=34 Score=38.79 Aligned_cols=124 Identities=10% Similarity=-0.051 Sum_probs=83.2
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCch--hHHHHHHHHHhcCCEEe
Q 007257 6 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICV 80 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~~ 80 (611)
.||.+|++.-+ -|.+|.. -.+|.+.+...+........ ..++.++|++...+|-.- .+...++..+..|+..+
T Consensus 223 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v 300 (979)
T 3tsy_A 223 SPDDVVALPYS--SGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAIL 300 (979)
T ss_dssp CTTSEEECCBC--CCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEE
T ss_pred CccceEEEEeC--CCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEE
Confidence 46777766542 4555554 47899888766554433222 236889999988887653 33345678888999988
Q ss_pred eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhcccc---ccccCccEEEEecC
Q 007257 81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 132 (611)
Q Consensus 81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~---~~~~~~~~i~~~~~ 132 (611)
..+ ....+.+...+++.++.++.........+..... ..+..++.++.-..
T Consensus 301 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~ 354 (979)
T 3tsy_A 301 IMP-KFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAA 354 (979)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSC
T ss_pred EeC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCC
Confidence 764 5678889999999999999998877766544322 12455666665543
No 76
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=56.43 E-value=42 Score=35.06 Aligned_cols=104 Identities=14% Similarity=-0.019 Sum_probs=73.2
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh--HHHHHHHHHhcCCEEee
Q 007257 6 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVP 81 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~~~ 81 (611)
.|+.+|++.-+ -|.+|.. -.+|.+.+...+..+... ..++.++|++...+|-.-. +...+++.+..|+.++.
T Consensus 174 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~ 249 (576)
T 3gqw_A 174 VPNDIAYLQYT--SGSTRFPRGVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDY 249 (576)
T ss_dssp CTTSEEEEECT--TSCSSSCCCEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEE
T ss_pred CCCCeEEEEeC--CCCCCCCceEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEE
Confidence 46777776653 4555544 478998887655444321 2588999999988887654 34456778888888877
Q ss_pred CCC---CCChhHHHHHHhhcCccEEEEcchhHHHH
Q 007257 82 LYD---TLGPGAVNFILDHAEIDFVFVQDKKVKEL 113 (611)
Q Consensus 82 l~~---~~~~~~l~~~l~~~~~~~li~~~~~~~~~ 113 (611)
+.+ ...+..+...+++.++.+++........+
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 284 (576)
T 3gqw_A 250 LRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELC 284 (576)
T ss_dssp CCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred cchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHH
Confidence 764 24677888999999999999887665443
No 77
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=54.95 E-value=68 Score=33.41 Aligned_cols=123 Identities=6% Similarity=-0.169 Sum_probs=80.4
Q ss_pred CCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHH-----HcCCCCCCEEEEEcCCchhH-HHHHHHHHhcCCE
Q 007257 7 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALR-----ASGAEPGCRVGIYGANCPQW-VEAMEACNALSLI 78 (611)
Q Consensus 7 pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~-----~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~ 78 (611)
++.+|++.-+ -|.+|..+ .+|+..+...+..++..+. ..++..++++....+.+.+. +..++..+..|+.
T Consensus 174 ~~~~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 251 (562)
T 3ite_A 174 ENLDAYLLYT--SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLC 251 (562)
T ss_dssp TTSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEEC--CCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccE
Confidence 4444544432 46666554 6799999888887777654 23567788888777766553 4446778889998
Q ss_pred EeeCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecC
Q 007257 79 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 132 (611)
Q Consensus 79 ~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 132 (611)
.+........+.+...+++.++.++......+..... .....+.++.++.-..
T Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~-~~~~~~~lr~~~~gG~ 304 (562)
T 3ite_A 252 AVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL-VPEDAPHLVYLGVGGE 304 (562)
T ss_dssp EEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC-CGGGSTTCCEEEEESS
T ss_pred EEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc-CccccCceEEEEEecC
Confidence 8876554445677788999999999998876655422 2234456666665544
No 78
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=53.44 E-value=90 Score=32.04 Aligned_cols=123 Identities=8% Similarity=-0.116 Sum_probs=78.8
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHhcCCEEeeC
Q 007257 6 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 82 (611)
Q Consensus 6 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l 82 (611)
.|+.+|++.-+ -|.+|.. -.+|.+.+...+..+.... ..++.+++++....+-+... +..+++++..|+..+.+
T Consensus 143 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~ 219 (521)
T 3l8c_A 143 KGDDNYYIIFT--SGTTGQPKGVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFAL 219 (521)
T ss_dssp CTTSEEEEEEC--CC---CCCEEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCcEEEEEc--CCCCCCCCEEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 45667766553 4555544 4788888876554433221 24678889888877766443 45677888899988877
Q ss_pred CCC--CChhHHHHHHhhcCccEEEEcchhHHHHhccc---cccccCccEEEEec
Q 007257 83 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFT 131 (611)
Q Consensus 83 ~~~--~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~~~~~~i~~~~ 131 (611)
+.. .....+...+.+.++.++.........+.... ....+.++.++...
T Consensus 220 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG 273 (521)
T 3l8c_A 220 PKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDG 273 (521)
T ss_dssp CGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECS
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEec
Confidence 654 36678889999999999999887765543322 12334556655544
No 79
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=48.13 E-value=58 Score=31.42 Aligned_cols=67 Identities=7% Similarity=-0.017 Sum_probs=47.5
Q ss_pred HHHHHcC-CCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEEcch
Q 007257 42 SALRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 108 (611)
Q Consensus 42 ~~L~~~G-v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~ 108 (611)
..+.+.| +++|+.|.+....+=.-..+.++|..+|..++.+-|...+..-..+++..++++++++..
T Consensus 60 ~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 60 DKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3445556 488988645555566667778888888987766555555556667889999999999754
No 80
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=44.94 E-value=73 Score=30.84 Aligned_cols=66 Identities=6% Similarity=-0.042 Sum_probs=50.7
Q ss_pred HHHHcC-CCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEEcch
Q 007257 43 ALRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 108 (611)
Q Consensus 43 ~L~~~G-v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~ 108 (611)
.+.+.| +.+|.+..+....+=.-..+.++|.++|..+..+-|...+..-...++..++++++++..
T Consensus 76 ~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 76 DAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 344555 578876666777777778888999999987777666666677778899999999998753
No 81
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=32.95 E-value=1.1e+02 Score=22.16 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=25.3
Q ss_pred cHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecCh
Q 007257 480 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCE 515 (611)
Q Consensus 480 ~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~vv~~~ 515 (611)
..++++.|.+.|.|.+|..+..+ .+.+.-+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~-~D~ll~v~~~d~ 49 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGE-YDLIVKVETDTL 49 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSS-CSEEEEEEESSH
T ss_pred HHHHHHHHhCCCCeeEEEEEccc-CCEEEEEEECCH
Confidence 37899999999999999988754 444444444443
No 82
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=28.79 E-value=1.2e+02 Score=28.97 Aligned_cols=60 Identities=7% Similarity=0.019 Sum_probs=36.4
Q ss_pred CCCCCCEEEEEcCCch------hHHHHHH-HHHhcCCEEeeCCCCC------------ChhHHHHHHhhcCccEEEEcc
Q 007257 48 GAEPGCRVGIYGANCP------QWVEAME-ACNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQD 107 (611)
Q Consensus 48 Gv~~gd~V~i~~~n~~------~~~~~~l-A~~~~G~~~~~l~~~~------------~~~~l~~~l~~~~~~~li~~~ 107 (611)
-+++||+|+|++|.+. +-+-... -+-..|..++.-+.-. .+++|..++.+-..++|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 3789999999999863 1121111 2234687776543221 223566677777778888764
No 83
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=28.53 E-value=2.1e+02 Score=27.24 Aligned_cols=77 Identities=17% Similarity=0.063 Sum_probs=51.1
Q ss_pred EEeHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEE
Q 007257 27 WKTYKEVYEEVLQIV---SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 103 (611)
Q Consensus 27 ~~Ty~ql~~~~~~lA---~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~l 103 (611)
.+++.+......... ..|...++++|++|+|+..-+.-.+++++|....|+.++-++.. ++. ..++.+.+++.+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 466766544333222 23445589999999999887777777777777778777666443 333 456777888877
Q ss_pred EEc
Q 007257 104 FVQ 106 (611)
Q Consensus 104 i~~ 106 (611)
+-.
T Consensus 213 i~~ 215 (348)
T 4eez_A 213 INS 215 (348)
T ss_dssp EEC
T ss_pred EeC
Confidence 654
No 84
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=28.21 E-value=1.9e+02 Score=27.43 Aligned_cols=65 Identities=15% Similarity=0.053 Sum_probs=43.1
Q ss_pred HHHcC-CCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEEcch
Q 007257 44 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 108 (611)
Q Consensus 44 L~~~G-v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~ 108 (611)
+.+.| +++|....+....+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34566 456643333444555566677778899987766555444455567888999999998753
No 85
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=27.28 E-value=2.2e+02 Score=26.84 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=43.2
Q ss_pred HHHHHcCC-CCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEEcch
Q 007257 42 SALRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 108 (611)
Q Consensus 42 ~~L~~~Gv-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~ 108 (611)
..+.+.|. ++|+.|.. ...+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 56 ~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 56 QAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 33445554 67776655 44444555666777799987666544444455566788999999998863
No 86
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=27.13 E-value=1.9e+02 Score=28.85 Aligned_cols=64 Identities=9% Similarity=0.012 Sum_probs=45.8
Q ss_pred HHHcC-CCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEEcc
Q 007257 44 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 107 (611)
Q Consensus 44 L~~~G-v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~ 107 (611)
..+.| +++|....+....+=.-..+.+++.+.|..++.+-|...+..-...++..++++++++.
T Consensus 165 A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 165 AEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 34566 46775555555556666777788899998777665555556667788999999999974
No 87
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=26.76 E-value=1.5e+02 Score=28.48 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=37.6
Q ss_pred CCCCCCEEEEEcCCchh------HHHHHHH-HHhcCCEEeeCCCCC------------ChhHHHHHHhhcCccEEEEcc
Q 007257 48 GAEPGCRVGIYGANCPQ------WVEAMEA-CNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQD 107 (611)
Q Consensus 48 Gv~~gd~V~i~~~n~~~------~~~~~lA-~~~~G~~~~~l~~~~------------~~~~l~~~l~~~~~~~li~~~ 107 (611)
-+++||+|+|++|.+.- -+-.... +-..|..++.-+... ..++|..++.+-++++|+|..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999999842 2222222 234688777532211 223566677777888888865
No 88
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=25.51 E-value=2.3e+02 Score=26.56 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=42.6
Q ss_pred HHHHcCC-CCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEEcch
Q 007257 43 ALRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 108 (611)
Q Consensus 43 ~L~~~Gv-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~ 108 (611)
.+.+.|. ++|+.|.. ...+=.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 55 ~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 55 AAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3445554 67766554 44444556667777889987666544444445566788999999998764
No 89
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=25.26 E-value=1.6e+02 Score=28.74 Aligned_cols=60 Identities=12% Similarity=0.043 Sum_probs=38.4
Q ss_pred CCCCCCEEEEEcCCchh------HHHHHHH-HHhcCCEEeeCCCCC------------ChhHHHHHHhhcCccEEEEcc
Q 007257 48 GAEPGCRVGIYGANCPQ------WVEAMEA-CNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQD 107 (611)
Q Consensus 48 Gv~~gd~V~i~~~n~~~------~~~~~lA-~~~~G~~~~~l~~~~------------~~~~l~~~l~~~~~~~li~~~ 107 (611)
-+++||+|+|++|.+.- -+-.... +-..|..++.-+... ..++|..++.+-++++|+|..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 58999999999999742 2222222 234688777543221 223566777777888888865
No 90
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=25.23 E-value=1.8e+02 Score=20.65 Aligned_cols=34 Identities=9% Similarity=-0.004 Sum_probs=24.1
Q ss_pred cHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecC
Q 007257 480 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPC 514 (611)
Q Consensus 480 ~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~vv~~ 514 (611)
..++++.|.++|.|.+|..+..+ .+.+.-+.+.+
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~-~d~l~~v~~~d 48 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGV-YDIVVKVEADS 48 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSS-CSEEEEEECSS
T ss_pred HHHHHHHHhCCCCeEEEEEEecc-CCEEEEEEECC
Confidence 37899999999999999988744 34444443333
No 91
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=24.99 E-value=48 Score=30.76 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCc
Q 007257 38 LQIVSALRASGAEPGCRVGIYGANC 62 (611)
Q Consensus 38 ~~lA~~L~~~Gv~~gd~V~i~~~n~ 62 (611)
..+...|++.||++||.|.+++.-+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4567789999999999999998754
No 92
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=24.90 E-value=3.5e+02 Score=23.59 Aligned_cols=90 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred CCCcEEEEecchh-hHHHHHH-HHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecch------HHHHHHHHHHHHH
Q 007257 215 TVDDVYLSFLPLA-HILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVP------RVFEKIHEGIKKA 284 (611)
Q Consensus 215 ~~~~~~l~~~p~~-~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p------~~~~~l~~~~~~~ 284 (611)
..+.+++.+.+-. |..|... ....-..|..++.... +++.+.+.+++++++++..+- ..+..+++.+++.
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~ 166 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAA 166 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhc
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCce---eEEEEecCCCCHHHHHHH
Q 007257 285 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL---RLVISGGAPLSTEVEEFL 354 (611)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~G~~l~~~~~~~~ 354 (611)
.+ -.++.||..++++..+.+
T Consensus 167 --------------------------------------------------~~~~~~~v~vGG~~~~~~~~~~~ 189 (210)
T 1y80_A 167 --------------------------------------------------GLRDRVKVIVGGAPLSQDFADEI 189 (210)
T ss_dssp --------------------------------------------------TCGGGCEEEEESTTCCHHHHHHH
T ss_pred --------------------------------------------------CCCCCCeEEEECCCCCHHHHHHc
No 93
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=24.71 E-value=1.4e+02 Score=29.14 Aligned_cols=58 Identities=9% Similarity=-0.065 Sum_probs=30.2
Q ss_pred HHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCC-----CChhHHHHHHhhcC--ccEEE
Q 007257 44 LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT-----LGPGAVNFILDHAE--IDFVF 104 (611)
Q Consensus 44 L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~-----~~~~~l~~~l~~~~--~~~li 104 (611)
|...++++||.|.+-.+....+ .-++...|+.++.++.+ +..+++...+...+ +++|+
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~ 134 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV 134 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC
T ss_pred HHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE
Confidence 3334567777776655544332 23445667665554322 35566666553333 55555
No 94
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=24.69 E-value=1.6e+02 Score=28.16 Aligned_cols=60 Identities=5% Similarity=0.017 Sum_probs=37.5
Q ss_pred CCCCCCEEEEEcCCchh------HHHHHHH-HHhcCCEEeeCCCCC------------ChhHHHHHHhhcCccEEEEcc
Q 007257 48 GAEPGCRVGIYGANCPQ------WVEAMEA-CNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQD 107 (611)
Q Consensus 48 Gv~~gd~V~i~~~n~~~------~~~~~lA-~~~~G~~~~~l~~~~------------~~~~l~~~l~~~~~~~li~~~ 107 (611)
-+++||+|+|++|.+.- -+-.... +-..|..++.-+.-. ..++|..++.+-++++|++..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998752 2222222 234688777543221 223566677777788888864
No 95
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=24.04 E-value=2.2e+02 Score=27.30 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=41.7
Q ss_pred HHHcC-CCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEEcch
Q 007257 44 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 108 (611)
Q Consensus 44 L~~~G-v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~ 108 (611)
+.+.| +++|+.|...+. +=.-..+.++|...|..++.+-|...+..-..+++..++++++++..
T Consensus 69 a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34445 467776665543 44445566677788986665544444455567888899999998763
No 96
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=23.10 E-value=55 Score=30.65 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=23.8
Q ss_pred eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc
Q 007257 26 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 62 (611)
Q Consensus 26 ~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~ 62 (611)
+.+|-.+ +...|++.||++||.|.+++.-+
T Consensus 20 ~~~T~~~-------L~~~L~~LGI~~Gd~llVHsSL~ 49 (286)
T 3sma_A 20 ELVTRDR-------LASDLAALGVRPGGVLLVHASLS 49 (286)
T ss_dssp CEECHHH-------HHHHHHHHTCCTTCEEEEEECST
T ss_pred CCcCHHH-------HHHHHHHcCCCCCCEEEEEechH
Confidence 4677665 46679999999999999998754
No 97
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=22.96 E-value=55 Score=30.51 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCc
Q 007257 39 QIVSALRASGAEPGCRVGIYGANC 62 (611)
Q Consensus 39 ~lA~~L~~~Gv~~gd~V~i~~~n~ 62 (611)
.+...|++.||++||.|.+++.-+
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl~ 40 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSLS 40 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECSG
T ss_pred HHHHHHHHcCCCCCCEEEEEechH
Confidence 367789999999999999998754
No 98
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=22.47 E-value=1.4e+02 Score=27.66 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=51.3
Q ss_pred ccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257 4 QKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81 (611)
Q Consensus 4 ~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 81 (611)
++-|+...+.+. |...-+|-..|..++.+.+.+.+..|.+.|+ ...++.-|+...+++--.--.....++.
T Consensus 26 ~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~----~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 26 KQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGI----KMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp HHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 356888888877 7777788888999999999999999999876 3677777787764322222233555554
No 99
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=22.31 E-value=3.2e+02 Score=25.55 Aligned_cols=65 Identities=8% Similarity=0.022 Sum_probs=41.9
Q ss_pred HHHHcC-CCCCC--EEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEEcch
Q 007257 43 ALRASG-AEPGC--RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 108 (611)
Q Consensus 43 ~L~~~G-v~~gd--~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~ 108 (611)
.+.+.| +++|+ .|.. ...+=.-..+.+++.+.|..++.+-|...+..-...++..++++++++..
T Consensus 50 ~a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 50 DAEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 344455 56676 4443 34444455666777899987665544434455567788899999998864
No 100
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=21.71 E-value=2.2e+02 Score=27.38 Aligned_cols=79 Identities=14% Similarity=-0.061 Sum_probs=49.0
Q ss_pred EEeHHHHHHHH--HHHH-HHHHHc-CCCCCCEEEEEcC-CchhHHHHHHHHHhcCCEE-eeCCCCCChhHHHHHHhhcCc
Q 007257 27 WKTYKEVYEEV--LQIV-SALRAS-GAEPGCRVGIYGA-NCPQWVEAMEACNALSLIC-VPLYDTLGPGAVNFILDHAEI 100 (611)
Q Consensus 27 ~~Ty~ql~~~~--~~lA-~~L~~~-Gv~~gd~V~i~~~-n~~~~~~~~lA~~~~G~~~-~~l~~~~~~~~l~~~l~~~~~ 100 (611)
.+++.+..... -..| ..|... ++++|++|+|+.. -.+-.+++++|- ..|+.. +..+..-..++...++++.++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 46777654421 1222 234443 7999999999987 456677777765 468744 444444334445566778899
Q ss_pred cEEEEc
Q 007257 101 DFVFVQ 106 (611)
Q Consensus 101 ~~li~~ 106 (611)
+.++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 887754
No 101
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=21.43 E-value=3.3e+02 Score=25.41 Aligned_cols=64 Identities=8% Similarity=-0.044 Sum_probs=43.0
Q ss_pred HHHHcC-CCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEEcc
Q 007257 43 ALRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 107 (611)
Q Consensus 43 ~L~~~G-v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~ 107 (611)
.+.+.| +++|+.|...+ .+=.-..+.+++.+.|..++.+-|...+..-...++..++++++++.
T Consensus 51 ~a~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 51 EAEKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HHHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 344455 46777666654 34444566677779998776655544445556788899999999985
No 102
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=21.18 E-value=2.7e+02 Score=26.58 Aligned_cols=32 Identities=6% Similarity=-0.133 Sum_probs=15.1
Q ss_pred cCCEEeeCCCCCChh-HHHHHHhhcCccEEEEc
Q 007257 75 LSLICVPLYDTLGPG-AVNFILDHAEIDFVFVQ 106 (611)
Q Consensus 75 ~G~~~~~l~~~~~~~-~l~~~l~~~~~~~li~~ 106 (611)
-|-.++..++.+..- .....+...+.+++.++
T Consensus 88 ~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~ 120 (384)
T 1eg5_A 88 RKRTIITTPIEHKAVLETMKYLSMKGFKVKYVP 120 (384)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTCEEEECC
T ss_pred CCCEEEECCCCchHHHHHHHHHHhcCCEEEEEc
Confidence 455555555554322 22223355566666554
No 103
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=21.01 E-value=2.6e+02 Score=22.11 Aligned_cols=51 Identities=12% Similarity=-0.006 Sum_probs=34.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeC--CCCCChhHH
Q 007257 41 VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL--YDTLGPGAV 91 (611)
Q Consensus 41 A~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l--~~~~~~~~l 91 (611)
+.+|.+.|+.++..+.+...+..+.+.++-=++++|...+.+ .+.++..+.
T Consensus 47 ~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~ 99 (119)
T 1ofu_X 47 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAAR 99 (119)
T ss_dssp HHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHH
T ss_pred HHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHH
Confidence 567777888777767777777778888888888887644433 244555443
No 104
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=20.49 E-value=2e+02 Score=27.12 Aligned_cols=75 Identities=11% Similarity=-0.045 Sum_probs=47.6
Q ss_pred EEeHHHHHHHHHH--HH-HHHHHcCCCCCCEEEEEc-CCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccE
Q 007257 27 WKTYKEVYEEVLQ--IV-SALRASGAEPGCRVGIYG-ANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF 102 (611)
Q Consensus 27 ~~Ty~ql~~~~~~--lA-~~L~~~Gv~~gd~V~i~~-~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ 102 (611)
.+++.+....... .| +.|...++++|++|+|+. .-.+-.+++++|- ..|+.++.+. +.++ ..++++.+++.
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 4577776543322 22 234445899999999996 5556666666665 5688766553 3444 55677788887
Q ss_pred EEEc
Q 007257 103 VFVQ 106 (611)
Q Consensus 103 li~~ 106 (611)
++..
T Consensus 200 ~i~~ 203 (321)
T 3tqh_A 200 CINY 203 (321)
T ss_dssp EEET
T ss_pred EEeC
Confidence 6643
No 105
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=20.27 E-value=2.8e+02 Score=25.29 Aligned_cols=89 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCCcEEEEecchh-hHHHHHH-HHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecch------HHHHHHHHHHHHH
Q 007257 215 TVDDVYLSFLPLA-HILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVP------RVFEKIHEGIKKA 284 (611)
Q Consensus 215 ~~~~~~l~~~p~~-~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p------~~~~~l~~~~~~~ 284 (611)
..+.+++.+.+-. |..|... ....-..|..++.... +++.+.+.+.++++.++..+- ..+..+++.+++.
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~ 201 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLEN 201 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhc
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHH
Q 007257 285 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE 352 (611)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~ 352 (611)
....+ +++||..++++..+
T Consensus 202 ~~~~~-------------------------------------------------v~vGG~~~~~~~~~ 220 (258)
T 2i2x_B 202 GIKIP-------------------------------------------------FACGGGAVNQDFVS 220 (258)
T ss_dssp TCCCC-------------------------------------------------EEEESTTCCHHHHH
T ss_pred CCCCc-------------------------------------------------EEEECccCCHHHHH
Done!