Query 007262
Match_columns 611
No_of_seqs 177 out of 2031
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 21:21:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 6.3E-30 2.2E-34 279.2 34.5 443 27-567 9-477 (491)
2 2xut_A Proton/peptide symporte 100.0 5.3E-29 1.8E-33 274.3 27.4 477 28-569 9-510 (524)
3 4gc0_A D-xylose-proton symport 99.9 1.7E-26 5.9E-31 251.8 24.4 434 51-581 31-482 (491)
4 1pw4_A Glycerol-3-phosphate tr 99.9 2.5E-26 8.7E-31 247.2 25.3 404 28-564 25-436 (451)
5 3o7q_A L-fucose-proton symport 99.9 3.8E-24 1.3E-28 229.4 34.4 176 27-234 22-226 (438)
6 2gfp_A EMRD, multidrug resista 99.9 2.7E-22 9.3E-27 210.8 18.5 165 36-232 5-169 (375)
7 2cfq_A Lactose permease; trans 99.9 1.7E-21 5.8E-26 208.5 13.3 390 33-566 9-404 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 8.6E-13 2.9E-17 141.2 16.9 178 31-237 252-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 3.5E-12 1.2E-16 136.1 18.4 167 31-231 258-426 (438)
10 2cfq_A Lactose permease; trans 99.3 2.3E-11 7.8E-16 129.7 13.6 165 41-236 230-398 (417)
11 4gc0_A D-xylose-proton symport 99.1 4.7E-09 1.6E-13 113.6 24.0 183 33-241 278-466 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.1 4.7E-10 1.6E-14 121.6 15.9 185 33-240 285-474 (491)
13 2gfp_A EMRD, multidrug resista 98.7 2.5E-09 8.4E-14 111.6 2.0 161 32-224 200-363 (375)
14 2xut_A Proton/peptide symporte 98.1 1.5E-05 5.3E-10 86.6 12.3 137 377-560 58-197 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=6.3e-30 Score=279.22 Aligned_cols=443 Identities=16% Similarity=0.226 Sum_probs=294.1
Q ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----hCCChhhhhHHHHHHHHHHHHHHHHHHHHhhh-ccCchHH
Q 007262 27 KGGLITMPFIIANEAFEKVASYGLVTNMILYLMKD-----YHLGVAKGTNVLFFWTAATNFMPILGAFLSDS-YLGRFLT 100 (611)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~Gr~~~ 100 (611)
+++++.++.+.+..+++.+.+|++..+++.|++++ +|++..+.+++.+++.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 45667788888899999999999999999999998 99999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCC
Q 007262 101 IGLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPN 180 (611)
Q Consensus 101 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~ 180 (611)
+.++.++..++.++++++. +.+.++++|+++|+|.+...++..++++|++|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 141 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPF-----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD--- 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCC-----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT---
T ss_pred HHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc---
Confidence 9999999999998888654 56779999999999999999999999999999811
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCcccccc---CCCC-chhHHHHH
Q 007262 181 NERVLESFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKL---KASS-SLLTGFAQ 256 (611)
Q Consensus 181 ~~~~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~ 256 (611)
+.|+.++++++...++|..++|.+++++.+..||++.|++.++..+++.++++...++..++ +++. ....+..+
T Consensus 142 --~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
T 4aps_A 142 --RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP 219 (491)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH
T ss_pred --ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHH
Confidence 34788899999999999999999999999999999999998777666655554433322211 1111 11111111
Q ss_pred HHH--------------HHHhhcccCCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcc
Q 007262 257 VAV--------------VAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLC 322 (611)
Q Consensus 257 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 322 (611)
... ........+. .+................. ...|+..
T Consensus 220 ~~~~~g~~l~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 272 (491)
T 4aps_A 220 LLVKVSLAVAGFIAIIVVMNLVGWNSL--------------------PAYINLLTIVAIAIPVFYF-------AWMISSV 272 (491)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHHSSCCT--------------------THHHHHHHHHHHHHHHHHH-------HHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccc--------------------ccchhhhhHHHHHHHHHHH-------HHHhhcc
Confidence 000 0000000000 0000000000000000000 0000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHhhhcC-Cch-hhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHh
Q 007262 323 TIEQVEELKALIKVLPLWSTGIMMSINISQ-NSF-PLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPV 400 (611)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 400 (611)
....+++++......++.....++..+.+ .+. ..+.....+.+. ...+.......+..++..++.+++.+
T Consensus 273 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~-- 344 (491)
T 4aps_A 273 -KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-----FPVSWFQSLNPLFIMLYTPFFAWLWT-- 344 (491)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-----SCSGGGTTHHHHHHHHHHHHHHHHHH--
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-----cCHHHHhccchHHHHHHHHHHHHHHH--
Confidence 00112233333444455555566666665 332 222222222221 34566777777888888887776554
Q ss_pred hhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhh
Q 007262 401 ASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQ 480 (611)
Q Consensus 401 ~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~ 480 (611)
|+++|+ ......+..|.++++++++++...... . ....+.+.+++++.+++.+++.+...+..
T Consensus 345 --r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 407 (491)
T 4aps_A 345 --AWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGAL-------Y------GTSGKVSPLWLVGSWALVILGEMLISPVG 407 (491)
T ss_dssp --HTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHH-------C------CCCTTCCTHHHHHHHHHHHHHHHTTTTHH
T ss_pred --HHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHh-------c------CCCCCccHHHHHHHHHHHHHHHHHHhHHH
Confidence 444442 245666778888888888777655310 0 00123466777888899999999999999
Q ss_pred HhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHH
Q 007262 481 TEFFYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLV 560 (611)
Q Consensus 481 ~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~ 560 (611)
++++.+.+|++.||+++|+.++..++|+.+++.+.+.+.+. .+...|++++++++++.++.++
T Consensus 408 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 408 LSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887775431 1246778888888888887777
Q ss_pred HhhccCc
Q 007262 561 CSWAYGP 567 (611)
Q Consensus 561 ~~~~~~~ 567 (611)
+.++.++
T Consensus 471 ~~~~~~~ 477 (491)
T 4aps_A 471 LSKRIQG 477 (491)
T ss_dssp C------
T ss_pred HHHHHHH
Confidence 7666544
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=5.3e-29 Score=274.34 Aligned_cols=477 Identities=20% Similarity=0.321 Sum_probs=285.4
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhC------CChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYH------LGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTI 101 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~ 101 (611)
++++.++.+.+..++..+++|++..+++.|+++++| ++..+.+++.+++.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 344556667788999999999999999999999999 99999999999999999999999999999944999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCc
Q 007262 102 GLASFCSLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNN 181 (611)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~ 181 (611)
.++.++..++.+++.++. .+.+.++++|++.|++.+...+...++++|++|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------ 140 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ------ 140 (524)
T ss_dssp HHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST------
T ss_pred HHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc------
Confidence 999999999888877643 1467789999999999999999999999999998
Q ss_pred chhhh---hHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHH
Q 007262 182 ERVLE---SFFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVA 258 (611)
Q Consensus 182 ~~~r~---~~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (611)
++|+ ..+++++...++|..++|.+++++.+..||++.|++.+++.+++.++++..+++..++++++++..+..+.+
T Consensus 141 -~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (524)
T 2xut_A 141 -SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI 219 (524)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence 5554 455668889999999999999999988999999998887766665555444443332222222111111111
Q ss_pred HHHHhhcccCCCCCCcccccccccCC---cccccCchhhhhhhhh----hccCCCCCcCCCCCCCCCCC-------cchh
Q 007262 259 VVAYKNRKLALPPPNASWCYHRQKDS---LLIVPTSKLRFLNKAC----LIRNPEQDIAPDGSALNPWS-------LCTI 324 (611)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~a~----~~~~~~~~~~~~~~~~~~~~-------~~~~ 324 (611)
....+++..+.+ .. ....+..... ......+....+..+. ...+. ..+.+|+ .++.
T Consensus 220 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 289 (524)
T 2xut_A 220 RSALLTKVEGKG-NI-GLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF--------VGAGASLQLERARKSHPD 289 (524)
T ss_dssp -------CTTHH-HH-HHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH--------HHTGGGTHHHHSCCSCCS
T ss_pred HHHHhhhhcccC-cc-chhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc--------cccchhhHHhhhhccccH
Confidence 111111100000 00 0000000000 0000000000000000 00000 0001110 0000
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHhhhcC-CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhh
Q 007262 325 EQVEELKALIKVLPLWSTGIMMSINISQ-NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASK 403 (611)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~~~~~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r 403 (611)
...+++++.+....++.....++..+.+ .+.+..+....+... + .+.+.+..++.+..++..++.+++..+..+|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (524)
T 2xut_A 290 AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIER 365 (524)
T ss_dssp SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC-------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHh
Confidence 0112234444455555555566666666 444344433332211 1 1344555666667777777777765555555
Q ss_pred hcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhh
Q 007262 404 MKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEF 483 (611)
Q Consensus 404 ~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~ 483 (611)
.+++ .+..+.+.+|+++.++++++++..+.. .......+.+++++.+++.+++++...+..+++
T Consensus 366 ~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 429 (524)
T 2xut_A 366 MGVK---LTALRKMGAGIAITGLSWIVVGTIQLM-------------MDGGSALSIFWQILPYALLTFGEVLVSATGLEF 429 (524)
T ss_dssp --------CCHHHHHTHHHHHHHHHHTTTTTTTT-------------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH-------------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 355666778888888777665543100 000012356677788899999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccc-CcccchhHHHHHHHHHHHHHHHHHHHHHh
Q 007262 484 FYSEFPKSMSSIAASLFGLGMAVANLLASAIVSAVDDITSKGGKESWVSS-NINKGRYDNYYWLLAIMSLVNLVYFLVCS 562 (611)
Q Consensus 484 ~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 562 (611)
+.+.+|++.||+++|++++..++|+.+++.+.+.+.+.++ .+|.+. +.+.+ ...|++.++++++++++++++.
T Consensus 430 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 430 AYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMSVT--AFQMFFFAGFAILAAIVFALYA 503 (524)
T ss_dssp HHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccccccccccc--ccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988765321 123221 11111 2337778888888888777777
Q ss_pred hccCccc
Q 007262 563 WAYGPCV 569 (611)
Q Consensus 563 ~~~~~~~ 569 (611)
+++++++
T Consensus 504 ~~~~~~~ 510 (524)
T 2xut_A 504 RSYQMQD 510 (524)
T ss_dssp -------
T ss_pred HHhccch
Confidence 6665443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=1.7e-26 Score=251.83 Aligned_cols=434 Identities=11% Similarity=0.022 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHhCC--------ChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhcC
Q 007262 51 VTNMILYLMKDYHL--------GVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWLTAMIP 122 (611)
Q Consensus 51 ~~~~~~yl~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~ 122 (611)
++.....++++++. +..+.+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.++++++....
T Consensus 31 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~ 109 (491)
T 4gc0_A 31 ISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGF 109 (491)
T ss_dssp GGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33344556665532 334668899999999999999999999997 999999999999999999988543100
Q ss_pred CCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHHHHHHHHH
Q 007262 123 KVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYATSAIAVVI 202 (611)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l 202 (611)
..... .......-..+...++++|+++|+|.|+..+..+.+++|..|+ +.|++..++.+....+|..+
T Consensus 110 ~~~~~-----~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~ 177 (491)
T 4gc0_A 110 TSINP-----DNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLL 177 (491)
T ss_dssp SCSSS-----SSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHH
T ss_pred hhhcc-----hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhh
Confidence 00000 0000000123788899999999999999999999999999999 99999999999999999998
Q ss_pred HHHHHHHhhcc--------ccchhhhHHHHHHHHHHHHHHHHhC--ccccccCCCCchhHHHHHHHHHHHhhcccCCCCC
Q 007262 203 ALTAIVYIQDH--------LGWKVGFGVPAILMVLSLLLFFIAS--PLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPP 272 (611)
Q Consensus 203 ~~~~~~~l~~~--------~gw~~~f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (611)
++.++..+... .+||+.+.+..+..++.++..+..+ |++...+.+.++..+..+.. ..+... .
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~---~~~~~~-~--- 250 (491)
T 4gc0_A 178 VYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI---MGNTLA-T--- 250 (491)
T ss_dssp HHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHH---HHHHHH-H---
T ss_pred hhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHh---cCCchh-H---
Confidence 88776665432 3477666665554444333322221 11111111111111111100 000000 0
Q ss_pred CcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhhhcC
Q 007262 273 NASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQ 352 (611)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q 352 (611)
+. ..+.....+..... .. ......+++......... +..+..
T Consensus 251 ------~~--------~~~~~~~~~~~~~~---------------~~----~~~~~~~~~~~~~~~~~~-----~~~~~~ 292 (491)
T 4gc0_A 251 ------QA--------VQEIKHSLDHGRKT---------------GG----RLLMFGVGVIVIGVMLSI-----FQQFVG 292 (491)
T ss_dssp ------HH--------HHHHHHHHHHHHHH---------------TT----HHHHSCCTHHHHHHHHHH-----HHHHTC
T ss_pred ------HH--------HHHHHHHHHhhhhh---------------hh----HHHHhcccHHHHHHHHHH-----HHHHhh
Confidence 00 00000000000000 00 000000011111111100 000000
Q ss_pred CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 007262 353 NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSG 432 (611)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~ 432 (611)
.+...+.........+ ..............+..++...+... +.+|++|| +.+..+..+++++++.++
T Consensus 293 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----l~dr~Grr-------~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 293 INVVLYYAPEVFKTLG-ASTDIALLQTIIVGVINLTFTVLAIM----TVDKFGRK-------PLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp HHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCSH-------HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhcchHHHHhcC-CCccchhhHHHHHHHHHHHHHHHHHH----HHHhhcCc-------chhccchHHHHHHHHHHH
Confidence 0000000000000010 00000111222222333333333333 44555433 335666666776666655
Q ss_pred HHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Q 007262 433 LVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLFGLGMAVANLLAS 512 (611)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~ 512 (611)
.... ........++..+++.........+..+.+..|.+|++.|++++|+.+..+++++++++
T Consensus 361 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~ 423 (491)
T 4gc0_A 361 TAFY-----------------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVS 423 (491)
T ss_dssp HHHH-----------------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-----------------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4420 01112222232333333333445577788999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCCCC
Q 007262 513 AIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYGPCVDRVTSVGDEGND 581 (611)
Q Consensus 513 ~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (611)
.+.|.+.+... ...+. +....|+++++++++++++.+++.||+|++++||+|+..|++.
T Consensus 424 ~~~p~l~~~~~-------~~~~~---~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 424 WTFPMMDKNSW-------LVAHF---HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp THHHHHCHHHH-------HHHHH---TTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHHHHHHHH-------HHhhh---hhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence 98887654221 00000 1135688899999999999999999999999999988776553
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=2.5e-26 Score=247.17 Aligned_cols=404 Identities=11% Similarity=-0.016 Sum_probs=253.4
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007262 28 GGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC 107 (611)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 107 (611)
.+++.++.+.+..++.....+.+...++.+ .+++ .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHH
Confidence 345556666666677766666665555544 5567 9999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHH----hhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcch
Q 007262 108 SLLGMFLLWL----TAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNER 183 (611)
Q Consensus 108 ~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~ 183 (611)
..++.+++++ +. +++.++++|+++|++.+...+...+++.|.+|+ +
T Consensus 102 ~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~ 151 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATS-----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------K 151 (451)
T ss_dssp HHHHHHHHHHCHHHHS-----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------T
T ss_pred HHHHHHHHHhhhhccc-----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------h
Confidence 9999999887 55 567799999999999999999999999999999 8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHH
Q 007262 184 VLESFFGWYYATSAIAVVIALTAIVYIQDHLG-WKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAY 262 (611)
Q Consensus 184 ~r~~~~~~~~~~~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (611)
+|++.+++.+...++|..++|.+++++.+..| ||+.|++.+++.++..++.+...++.++.....+. .
T Consensus 152 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------- 220 (451)
T 1pw4_A 152 ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E---------- 220 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T----------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h----------
Confidence 99999999999999999999999999888888 99999998877666555444433322111100000 0
Q ss_pred hhcccCCCCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHH-HH
Q 007262 263 KNRKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPL-WS 341 (611)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 341 (611)
+ ..+. .+.+. . +.. ..+..++..........+.++..... ++
T Consensus 221 -~----~~~~-----~~~~~--~--~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (451)
T 1pw4_A 221 -E----YKND-----YPDDY--N--EKA-----------------------EQELTAKQIFMQYVLPNKLLWYIAIANVF 263 (451)
T ss_dssp -T----TCCC---------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHH
T ss_pred -h----hccc-----ccccc--h--hhh-----------------------hcccccccchHHHHHcCHHHHHHHHHHHH
Confidence 0 0000 00000 0 000 00001100000000001222221111 11
Q ss_pred HhHhHHhhhcCCchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHH
Q 007262 342 TGIMMSINISQNSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGL 421 (611)
Q Consensus 342 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~ 421 (611)
............+.++.+....+. ...+.+.....+..++..++..++ .+|+.+ +.++.+.++.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~-----~~~~~~~~~~ 327 (451)
T 1pw4_A 264 VYLLRYGILDWSPTYLKEVKHFAL-------DKSSWAYFLYEYAGIPGTLLCGWM----SDKVFR-----GNRGATGVFF 327 (451)
T ss_dssp HHHHHHHHHHHHHHHBTTBSCCCH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHTST-----TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHhc-----CCchhHHHHH
Confidence 111111111111111111001100 112333444444455555554444 445310 1222344444
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHHH
Q 007262 422 FLSC-MGMVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASLF 500 (611)
Q Consensus 422 ~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~ 500 (611)
++.. ++++++... ...+.+.+....++.+++.....+..+.++.+.+|++.||++.|+.
T Consensus 328 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 387 (451)
T 1pw4_A 328 MTLVTIATIVYWMN--------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT 387 (451)
T ss_dssp HHHHHHHHHHTTSC--------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHH
Confidence 4433 444433221 1124555666677778888888888889999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007262 501 GLGMAV-ANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWA 564 (611)
Q Consensus 501 ~~~~~l-g~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 564 (611)
+...++ |..+++.+.+.+.+..+ +...|++.+++.+++.++.++..++
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFFG----------------WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSC----------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----------------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999 99999999998776432 3677888888888887776665443
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=3.8e-24 Score=229.38 Aligned_cols=176 Identities=14% Similarity=0.098 Sum_probs=146.0
Q ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007262 27 KGGLITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASF 106 (611)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 106 (611)
+++++.++.+.+..++..+..+ ....+.+++++++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANN-LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 3445555555555555555554 444455567889999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHH---HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcch
Q 007262 107 CSLLGMFLL---WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNER 183 (611)
Q Consensus 107 ~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~ 183 (611)
+..++.+++ .++. +++.++++|++.|+|.+...+...++++|.+|+ +
T Consensus 100 ~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~ 149 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM-----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------S 149 (438)
T ss_dssp HHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS-------T
T ss_pred HHHHHHHHHHhccccc-----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc-------h
Confidence 999999888 4433 688899999999999999999999999999999 8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhh-cccc-------------------------chhhhHHHHHHHHHHHHHH
Q 007262 184 VLESFFGWYYATSAIAVVIALTAIVYIQ-DHLG-------------------------WKVGFGVPAILMVLSLLLF 234 (611)
Q Consensus 184 ~r~~~~~~~~~~~~ig~~l~~~~~~~l~-~~~g-------------------------w~~~f~~~~~~~~~~~~~~ 234 (611)
+|++.+++.+...++|..++|.+++++. +..+ ||+.|++.+.+.++..++.
T Consensus 150 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 150 SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 5544 8999977666555444433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.88 E-value=2.7e-22 Score=210.82 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 007262 36 IIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLL 115 (611)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~ 115 (611)
+.+..++..+........++. +.+++|.+..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHH
Confidence 344555555555555554544 5678999999999999999999999999999999997 99999999999999999888
Q ss_pred HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHHHHH
Q 007262 116 WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWYYAT 195 (611)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (611)
.++. +++.+++.|++.|++.+...+...+++.|.+|+ ++|++.+++.+..
T Consensus 83 ~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 132 (375)
T 2gfp_A 83 VTTS-----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYER-------TQLRHANSLLNMG 132 (375)
T ss_dssp HHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SSCCSHHHHHHHH
T ss_pred HHhc-----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH-------HHHHHHHHHHHHH
Confidence 8766 788899999999999999999999999999998 7889999999999
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHH
Q 007262 196 SAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLL 232 (611)
Q Consensus 196 ~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 232 (611)
.++|..++|.+++++.+..+||+.|++.++..++..+
T Consensus 133 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 133 ILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988999999887766554433
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.85 E-value=1.7e-21 Score=208.52 Aligned_cols=390 Identities=12% Similarity=0.036 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
.+.+....++....+..+..+++.|+++++|++..+.+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~ 87 (417)
T 2cfq_A 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMF 87 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHH
Confidence 44445555566666666678899999999999999999999999999999999999999997 99999998887765432
Q ss_pred HHH---HHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 113 FLL---WLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 113 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
... .++..+ ...+..++.+.+++.+...+...+.+.+..++. .+.++..+
T Consensus 88 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~ 140 (417)
T 2cfq_A 88 APFFIFIFGPLL----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV-----SRRSNFEF 140 (417)
T ss_dssp HHHHHHTHHHHH----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH-----HHHHTCCH
T ss_pred HHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-----hhhcccch
Confidence 111 111100 001233444555544444444444444444330 03445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCccccccCCCCchhHHHHHHHHHHHhhcccCC
Q 007262 190 GWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLAL 269 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (611)
+..+...++|..++|.+++++.+ .+|++.|++.++..++..+..+..+++ .++..+. +
T Consensus 141 g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------------~---- 198 (417)
T 2cfq_A 141 GRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD---APSSATV--------------A---- 198 (417)
T ss_dssp HHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC---CSCSSCS--------------S----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc---ccccccc--------------c----
Confidence 66666778999999999998876 589998887655433332221111111 0000000 0
Q ss_pred CCCCcccccccccCCcccccCchhhhhhhhhhccCCCCCcCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhHhHHhh
Q 007262 270 PPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRNPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSIN 349 (611)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (611)
+.. +.++ + +..++.. .+..++ +..+............+..
T Consensus 199 -~~~-----~~~~-----~---------------------------~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~ 238 (417)
T 2cfq_A 199 -NAV-----GANH-----S---------------------------AFSLKLA-LELFRQ-PKLWFLSLYVIGVSCTYDV 238 (417)
T ss_dssp -SSS-----SSCC-----C---------------------------CCCHHHH-HHHTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred -ccc-----cccc-----c---------------------------cccHHHH-HHHhcC-CchhhHHHHHHHHHHHHHH
Confidence 000 0000 0 0000000 000001 1222221111111112222
Q ss_pred hcC--CchhhhhhhcccccCCCccccccccccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHH
Q 007262 350 ISQ--NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMG 427 (611)
Q Consensus 350 ~~q--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~ 427 (611)
+.+ +.+ + ....+... .+ ....+....++.+..++...+..++. +|++ +++.+..+.++++++
T Consensus 239 ~~~~~~~~-~--~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~g~l~----dr~g-------~~~~l~~~~~~~~~~ 302 (417)
T 2cfq_A 239 FDQQFANF-F--TSFFATGE-QG-TRVFGYVTTMGELLNASIMFFAPLII----NRIG-------GKNALLLAGTIMSVR 302 (417)
T ss_dssp HHHHHHHH-H--HHTSSSHH-HH-THHHHHHHHHHHHHHHHHHHHHHHHH----HHHC-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-H--HHHHhccC-CC-hhHHHHHHHHHHHHHHHHHHHHHHHH----HHhc-------HHHHHHHHHHHHHHH
Confidence 222 211 1 11111000 00 00012233334344444445544444 4442 233455666666665
Q ss_pred HHHHHHHHHHHHHHHhhcCccCCCCccccchHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHH-HHHHHHH
Q 007262 428 MVVSGLVENIRRRRAIREGYLNNGQAVLEMSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASL-FGLGMAV 506 (611)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~l 506 (611)
+++.+.. .+.+.++...++.+++.....+....++.+..|++.||++.++ ++..+++
T Consensus 303 ~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~l 360 (417)
T 2cfq_A 303 IIGSSFA----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL 360 (417)
T ss_dssp HHHHTTC----------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhH
Confidence 5444322 1334444455556666666667778899999999999999998 5888999
Q ss_pred HHHHHHHHHHhhhhhccCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 007262 507 ANLLASAIVSAVDDITSKGGKESWVSSNINKGRYDNYYWLLAIMSLVNLVYFLVCSWAYG 566 (611)
Q Consensus 507 g~~l~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 566 (611)
|+.+++.+.+.+.+..+ +...|.+.+++++++.++.++..++.+
T Consensus 361 g~~~gp~l~G~l~~~~g----------------~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 361 AMIFMSVLAGNMYESIG----------------FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHTHHHHTHHHHSH----------------HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHhhhhHHHHHHhcC----------------cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999998765331 356777888888887776665555433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.45 E-value=8.6e-13 Score=141.25 Aligned_cols=178 Identities=17% Similarity=0.240 Sum_probs=148.7
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhcc--CchHHHHHHHHHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYL--GRFLTIGLASFCS 108 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~--Gr~~~~~~~~~~~ 108 (611)
+.++.+.+..++.....+++..+++.|+++.+|++..+.+++.+...++..++.++.|+++|| + |||+.+.++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 456666777788888888999999999998899999999999999999999999999999999 5 8888888777665
Q ss_pred H-HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 109 L-LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 109 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
. ++.+++.+.. ..+.+.+.+..++.|++.+...+....++.|.+|+ +.|++
T Consensus 331 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~ 382 (451)
T 1pw4_A 331 VTIATIVYWMNP---------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGT 382 (451)
T ss_dssp HHHHHHHTTSCC---------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHH
T ss_pred HHHHHHHHHHhc---------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-------hhhhh
Confidence 5 5544443321 11456677778889999999999999999999999 89999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHh
Q 007262 188 FFGWYYATSAI-AVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIA 237 (611)
Q Consensus 188 ~~~~~~~~~~i-g~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (611)
++++++...++ |..++|.+.|++.+..||+..|++.+++.+++.++.+..
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999998887776666555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.42 E-value=3.5e-12 Score=136.06 Aligned_cols=167 Identities=10% Similarity=0.047 Sum_probs=135.9
Q ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007262 31 ITMPFIIANEAFEKVASYGLVTNMILY-LMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSL 109 (611)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 109 (611)
+.++..++..++.....+++..+++.| +++.+|++..+++.+.+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 345555666777777788888999999 8888899999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHH
Q 007262 110 LGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFF 189 (611)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (611)
++.++..+.. +... .+..++.|++.+...|...++..|.+|+ + ++.+.
T Consensus 337 ~~~~~~~~~~-----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~-~~~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAG-----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQ-------D-TKYGS 384 (438)
T ss_dssp HHHHHHHHCC-----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGG-------G-HHHHH
T ss_pred HHHHHHHHcC-----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhccc-------c-ccchh
Confidence 8877766543 3333 3344788899999999999999999987 4 55556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHH
Q 007262 190 GWYYATSAIAVVIALTAIVYIQDHLG-WKVGFGVPAILMVLSL 231 (611)
Q Consensus 190 ~~~~~~~~ig~~l~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~ 231 (611)
++.. ...+|..++|.+.|++.+..| ++..|++.+++.++..
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 6554 567999999999999999988 9999988765544443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.27 E-value=2.3e-11 Score=129.65 Aligned_cols=165 Identities=7% Similarity=-0.021 Sum_probs=123.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhCC---ChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHH
Q 007262 41 AFEKVASYGLVTNMILYLMKDYHL---GVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGMFLLWL 117 (611)
Q Consensus 41 ~~~~~~~~~~~~~~~~yl~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~~~~~ 117 (611)
++....++....+++.|+.+.++. +....+.+.++..++..++.+++|+++||+ |||+++.++.++..++.++..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445556688888776653 234456667777778888999999999997 9999998888777776555543
Q ss_pred hhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH-HHHH
Q 007262 118 TAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY-YATS 196 (611)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~ 196 (611)
.. +.+.+++..++.+++.+...+....++.|.+|+ +.|++..+.. +...
T Consensus 309 ~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~ 358 (417)
T 2cfq_A 309 AT-----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFK 358 (417)
T ss_dssp CC-----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHTTTH
T ss_pred hc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHH
Confidence 22 345566666777777777777788999999999 9999998884 6677
Q ss_pred HHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Q 007262 197 AIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFI 236 (611)
Q Consensus 197 ~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (611)
.+|+.++|.++|++.+..|+...|.+.+++.+++.++.+.
T Consensus 359 ~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 359 QLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999998888888888877776666554433
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.14 E-value=4.7e-09 Score=113.58 Aligned_cols=183 Identities=12% Similarity=0.098 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFCSLLGM 112 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 112 (611)
....+....+..+..+....+...++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHH
Confidence 33333344443333333344445566677888888888888888888999999999999997 99999999988888877
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhHHHHH
Q 007262 113 FLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESFFGWY 192 (611)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (611)
+.+........ .....+....+.......+..|..+.+.+|.+|. +.|+++.++.
T Consensus 357 ~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt-------~~R~~~~g~~ 411 (491)
T 4gc0_A 357 FSLGTAFYTQA------------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN-------AIRGKALAIA 411 (491)
T ss_dssp HHHHHHHHTTC------------------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT-------TTHHHHHHHH
T ss_pred HHHHHHHhccc------------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH-------hHHHHHHHHH
Confidence 66654331110 1122122212222222233457778999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc------cccchhhhHHHHHHHHHHHHHHHHhCccc
Q 007262 193 YATSAIAVVIALTAIVYIQD------HLGWKVGFGVPAILMVLSLLLFFIASPLY 241 (611)
Q Consensus 193 ~~~~~ig~~l~~~~~~~l~~------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~ 241 (611)
+....+|+.+++.+.+.+.+ ..++...|++.+++.+++.++.++..|+.
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 99889999988887776643 23556677777777666666665555543
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.13 E-value=4.7e-10 Score=121.57 Aligned_cols=185 Identities=7% Similarity=0.032 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH-----HHHHH
Q 007262 33 MPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIG-----LASFC 107 (611)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~-----~~~~~ 107 (611)
.+.+.+...+....++....+++.|+++.++.+..+.+++.+...++..++.++.|+++||+ |||+... ++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44445556666677777788899999998898878888888999999999999999999997 9876544 66666
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhh
Q 007262 108 SLLGMFLLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLES 187 (611)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (611)
..++.++..+...... .....+.+.+.+..++.|++.+...+...+++.|.+|+ +.|+.
T Consensus 364 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-------~~~g~ 422 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK-------AFNSQ 422 (491)
T ss_dssp HHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-------TCSSS
T ss_pred HHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------HHHHH
Confidence 6666655544320000 00112455677778889999999999999999999999 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHhCcc
Q 007262 188 FFGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPAILMVLSLLLFFIASPL 240 (611)
Q Consensus 188 ~~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~ 240 (611)
+.++++...++|..++|.+.+++.+. ++...|.+.+.+.+++.++.+...++
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887764 66777777776666665555554443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.72 E-value=2.5e-09 Score=111.57 Aligned_cols=161 Identities=8% Similarity=-0.000 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH-HHH
Q 007262 32 TMPFIIANEAFEKVASYGLVTNMILYLMKDYHLGVAKGTNVLFFWTAATNFMPILGAFLSDSYLGRFLTIGLASFC-SLL 110 (611)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~-~~i 110 (611)
.++...+..++.....+++..+.+.|+++.+|.+..+.+.+.+...++..++.++.|+++||+ ||+ +..+..+ ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~~ 276 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHH
Confidence 355556667777778888888999999998999999999999999999999999999999997 772 2223222 222
Q ss_pred HHH--HHHHhhhcCCCCCCCCCccccCCCCCCchhhHHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCCcchhhhhH
Q 007262 111 GMF--LLWLTAMIPKVKPSPCNILTQSCESPTTAQMTLLISSFCFISIGAGGIRPCSIAFGADQLDRKDNPNNERVLESF 188 (611)
Q Consensus 111 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~glg~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (611)
+.. ...... ..+.+.+++..++.|++.+...+...+++.|.+| +.|+++
T Consensus 277 ~~~~~~~~~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p--------~~~g~~ 327 (375)
T 2gfp_A 277 GLLMWIPDWFG---------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP--------FLAGTA 327 (375)
T ss_dssp SSSSSHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH--------HHHHHH
T ss_pred HHHHHHHhhhc---------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC--------cccchH
Confidence 222 111110 0145566777888999999999999999999886 468999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHH
Q 007262 189 FGWYYATSAIAVVIALTAIVYIQDHLGWKVGFGVPA 224 (611)
Q Consensus 189 ~~~~~~~~~ig~~l~~~~~~~l~~~~gw~~~f~~~~ 224 (611)
.+..+...++|..++|.+.+.+.+..+|+..+.+.+
T Consensus 328 ~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 328 GALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999999888777877766543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.08 E-value=1.5e-05 Score=86.62 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=93.4
Q ss_pred cccchhHHHHHHHHHHHhHHHHHhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc
Q 007262 377 SFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVVSGLVENIRRRRAIREGYLNNGQAVLE 456 (611)
Q Consensus 377 ~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (611)
.+.....+..++..++.+++. +|+. ++++.+.++.++.+++.++.+.. .
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l~----dr~~------g~r~~~~~~~~~~~~~~~~~~~~---------------------~ 106 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWIA----DRFF------GKYNTILWLSLIYCVGHAFLAIF---------------------E 106 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHHH----TTSS------CSHHHHHHHHHHHHHHHHHHHHT---------------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHh------cchHHHHHHHHHHHHHHHHHHHh---------------------c
Confidence 344444445555555555443 4440 23344677777777777666543 1
Q ss_pred chHHHHHHHHHHHhhhHHHHhhhhHhhhhccCCchhhHHHHHH---HHHHHHHHHHHHHHHHHhhhhhccCCCCcccccc
Q 007262 457 MSAMWLVPQHCLNGLAEAFNAIAQTEFFYSEFPKSMSSIAASL---FGLGMAVANLLASAIVSAVDDITSKGGKESWVSS 533 (611)
Q Consensus 457 ~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~lg~~l~~~i~~~i~~~~~~~~~~~w~~~ 533 (611)
.+.+.++...++.|++.+...+...+++.+.+|++.|+.+.++ .+...++|..+++.+.+.+.+.. +|
T Consensus 107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~--- 177 (524)
T 2xut_A 107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA--- 177 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH---
T ss_pred ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH---
Confidence 1566677788899999999999999999999999999877776 88888899999988877665422 23
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHH
Q 007262 534 NINKGRYDNYYWLLAIMSLVNLVYFLV 560 (611)
Q Consensus 534 ~~~~~~~~~~f~~~~~~~~v~~~~~~~ 560 (611)
...|++.+++.++.++.+++
T Consensus 178 -------~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 178 -------AVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHS
T ss_pred -------HHHHHHHHHHHHHHHHHHHH
Confidence 56777777666665555443
Done!