BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007263
(610 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 588 bits (1516), Expect = e-168, Method: Compositional matrix adjust.
Identities = 281/325 (86%), Positives = 304/325 (93%)
Query: 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFL 60
MENLISLVNKIQRACTALGDHG++SALPTLWDSLPAIA LESIVGKDFL
Sbjct: 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFL 60
Query: 61 PRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQ 120
PRGSGIVTRRPLVLQL K+++G+REYAEFLH+PRK+FTDFAAVRKEIQDETDRETGR+K
Sbjct: 61 PRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKA 120
Query: 121 ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAI 180
ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAV+GQ DSIV+DIENMVRSYIEKPNCIILAI
Sbjct: 121 ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180
Query: 181 SPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240
SPANQDLATSDAIKISREVDP+G+RTFGVLTKIDLMDKGTDA +ILEG+S++LK+PW+GV
Sbjct: 181 SPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240
Query: 241 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIP 300
VNRSQADINKNVDMIAAR+REREYFS T EY+HLA +MGSEHLAKMLSKHLE VIKSRIP
Sbjct: 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIP 300
Query: 301 GIQSLISKTVLELENELSRLGKPIA 325
GIQSLI+KTVLELE ELSRLGKPIA
Sbjct: 301 GIQSLINKTVLELETELSRLGKPIA 325
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 28/28 (100%)
Query: 579 DPAVMERRSALAKRLELYRSAQSEIDAV 606
DPA+MERRSA++KRLELYR+AQSEIDAV
Sbjct: 333 DPAIMERRSAISKRLELYRAAQSEIDAV 360
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/498 (40%), Positives = 294/498 (59%), Gaps = 22/498 (4%)
Query: 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFL 60
ME+LI LVN++Q A +A+G + + LP IA LE+ VG+DFL
Sbjct: 3 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFL 54
Query: 61 PRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQ 120
PRGSGIVTRRPLVLQL + EYAEFLH K+FTDF VR EI+ ETDR TG K
Sbjct: 55 PRGSGIVTRRPLVLQLVN---ATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKG 111
Query: 121 ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAI 180
IS VPI+L +YSP+V+NLTL+DLPG+TKV V QP I I +M+ ++ K NC+ILA+
Sbjct: 112 ISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAV 171
Query: 181 SPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240
SPAN DLA SDA+K+++EVDP G+RT GV+TK+DLMD+GTDA D+LE K L+ +IGV
Sbjct: 172 SPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 231
Query: 241 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIP 300
VNRSQ DI+ D+ AA ER++F + P Y+HLA RMG+ +L K+L++ L I+ +P
Sbjct: 232 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLP 291
Query: 301 GIQSLISKTVLELENELSRLGKPIAADAGGKLYTIMEICRLFDQIYKEHLDGVR------ 354
G+++ + +L +E E+ D K ++++ + F +++ ++G
Sbjct: 292 GLRNKLQSQLLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTY 351
Query: 355 --PGGDKIYYVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIE 412
GG +I +F + P L +++FD++ I I A L P+ + +++
Sbjct: 352 ELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNAAAAATGLFTPDMAFETIVK 411
Query: 413 SSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTS 472
V IR P VD V + EL+ T +L+QYP LR E+ + +
Sbjct: 412 KQVKKIREPCLKCVDMV---ISELISTVRQCTKKLQQYPRLREEMERIVTTHIREREGRT 468
Query: 473 KKATLQLVDMECSYLTVD 490
K+ + L+D+E +Y+ +
Sbjct: 469 KEQVMLLIDIELAYMNTN 486
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust.
Identities = 199/498 (39%), Positives = 294/498 (59%), Gaps = 22/498 (4%)
Query: 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFL 60
ME+LI LVN++Q A +A+G + + LP IA LE+ VG+DFL
Sbjct: 26 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFL 77
Query: 61 PRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQ 120
PRGSGIVTRRPLVLQL + EYAEFLH K+FTDF VR EI+ ETDR TG K
Sbjct: 78 PRGSGIVTRRPLVLQLVN---STTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKG 134
Query: 121 ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAI 180
IS VPI+L +YSP+V+NLTL+DLPG+TKV V QP I I +M+ ++ K NC+ILA+
Sbjct: 135 ISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAV 194
Query: 181 SPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240
SPAN DLA SDA+KI++EVDP G+RT GV+TK+DLMD+GTDA D+LE K L+ +IGV
Sbjct: 195 SPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 254
Query: 241 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIP 300
VNRSQ DI+ D+ AA ER++F + P Y+HLA RMG+ +L K+L++ L I+ +P
Sbjct: 255 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLP 314
Query: 301 GIQSLISKTVLELENELSRLGKPIAADAGGKLYTIMEICRLFDQIYKEHLDGVR------ 354
G+++ + +L +E E+ D K ++++ + F +++ ++G
Sbjct: 315 GLRNKLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTY 374
Query: 355 --PGGDKIYYVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIE 412
GG +I +F + P L +++FD++ I I + L P+ + ++
Sbjct: 375 ELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVK 434
Query: 413 SSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTS 472
V ++ P+ VD V + L + K + +L+QYP LR E+ + +
Sbjct: 435 KQVQKLKEPSIKCVDMVVSELTSTIRKC---SEKLQQYPRLREEMERIVTTHIREREGRT 491
Query: 473 KKATLQLVDMECSYLTVD 490
K+ + L+D+E +Y+ +
Sbjct: 492 KEQVMLLIDIELAYMNTN 509
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 320 bits (821), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 168/342 (49%), Positives = 227/342 (66%), Gaps = 12/342 (3%)
Query: 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFL 60
ME+LI LVN++Q A +A+G + + LP IA LE+ VG+DFL
Sbjct: 6 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFL 57
Query: 61 PRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQ 120
PRGSGIVTRRPLVLQL + EYAEFLH K+FTDF VR EI+ ETDR TG K
Sbjct: 58 PRGSGIVTRRPLVLQL---VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKG 114
Query: 121 ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAI 180
IS VPI+L +YSP+V+NLTL+DLPG+TKV V QP I I +M+ ++ K NC+ILA+
Sbjct: 115 ISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAV 174
Query: 181 SPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240
SPAN DLA SDA+K+++EVDP G+RT GV+TK+DLMD+GTDA D+LE K L+ +IGV
Sbjct: 175 SPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 234
Query: 241 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIP 300
VNRSQ DI+ D+ AA ER++F + P Y+HLA RMG+ +L K+L++ L I+ +P
Sbjct: 235 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLP 294
Query: 301 GIQSLISKTVLELENELSRLGKPIAADAGGKLYTIMEICRLF 342
G+++ + +L +E E+ K D G + E+ R++
Sbjct: 295 GLRNKLQSQLLSIEKEVEEY-KNFRPDKHGTDSRVDEMLRMY 335
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 314 bits (805), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 161/304 (52%), Positives = 211/304 (69%), Gaps = 11/304 (3%)
Query: 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFL 60
ME+LI LVN++Q A +A+G + + LP IA LE+ VG+DFL
Sbjct: 1 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFL 52
Query: 61 PRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQ 120
PRGSGIVTRRPLVLQL + EYAEFLH K+FTDF VR EI+ ETDR TG K
Sbjct: 53 PRGSGIVTRRPLVLQL---VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKG 109
Query: 121 ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAI 180
IS VPI+L +YSP+V+NLTL+DLPG+TKV V QP I I +M+ ++ K NC+ILA+
Sbjct: 110 ISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAV 169
Query: 181 SPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240
SPAN DLA SDA+KI++EVDP G+RT GV+TK+DLMD+GTDA D+LE K L+ +IGV
Sbjct: 170 SPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 229
Query: 241 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIP 300
VNRSQ DI+ D+ AA ER++F + P Y+HLA RMG+ +L K+L++ L I+ +P
Sbjct: 230 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLP 289
Query: 301 GIQS 304
G+++
Sbjct: 290 GLRN 293
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 159/316 (50%), Positives = 213/316 (67%), Gaps = 11/316 (3%)
Query: 2 ENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLP 61
E+LI LVN++Q A +A+G + + LP IA LE+ VG+DFLP
Sbjct: 7 EDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLP 58
Query: 62 RGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQI 121
RGSGIVTRRPLVLQL + EYAEFLH K+FTDF VR EI+ ETDR TG K I
Sbjct: 59 RGSGIVTRRPLVLQL---VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI 115
Query: 122 SSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAIS 181
S VPI+L +YSP+V+NLTL+DLPG TKV V QP I I + + ++ K NC+ILA+S
Sbjct: 116 SPVPINLRVYSPHVLNLTLVDLPGXTKVPVGDQPPDIEFQIRDXLXQFVTKENCLILAVS 175
Query: 182 PANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVV 241
PAN DLA SDA+K+++EVDP G+RT GV+TK+DL D+GTDA D+LE K L+ +IGVV
Sbjct: 176 PANSDLANSDALKVAKEVDPQGQRTIGVITKLDLXDEGTDARDVLENKLLPLRRGYIGVV 235
Query: 242 NRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPG 301
NRSQ DI+ D+ AA ER++F + P Y+HLA R G+ +L K+L++ L I+ +PG
Sbjct: 236 NRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRXGTPYLQKVLNQQLTNHIRDTLPG 295
Query: 302 IQSLISKTVLELENEL 317
+++ + +L +E E+
Sbjct: 296 LRNKLQSQLLSIEKEV 311
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 306 bits (783), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 160/311 (51%), Positives = 208/311 (66%), Gaps = 11/311 (3%)
Query: 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFL 60
ME LI LVN++Q A +ALG + LP IA LE+ VG+DFL
Sbjct: 19 MEELIPLVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFL 70
Query: 61 PRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQ 120
PRGSGIVTRRPLVLQL EYAEFLH K+FTDF VR EI+ ETDR TG K
Sbjct: 71 PRGSGIVTRRPLVLQLIT---SKAEYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKG 127
Query: 121 ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAI 180
ISS+PI+L +YSP+V+NLTLIDLPG+TKV V QP I I M+ +I + NC+ILA+
Sbjct: 128 ISSIPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAV 187
Query: 181 SPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240
+PAN DLA SDA+K+++EVDP G RT GV+TK+DLMD+GTDA D+LE K L+ ++GV
Sbjct: 188 TPANTDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGV 247
Query: 241 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIP 300
VNRSQ DI+ D+ AA ER++F + P Y+H+A RMG+ HL K+L++ L I+ +P
Sbjct: 248 VNRSQKDIDGKKDIKAAMLAERKFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLP 307
Query: 301 GIQSLISKTVL 311
++ + +L
Sbjct: 308 NFRNKLQGQLL 318
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 284 bits (727), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 154/322 (47%), Positives = 211/322 (65%), Gaps = 14/322 (4%)
Query: 2 ENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLP 61
+ LI ++NK+Q LG + L LP I LE+IVG+DFLP
Sbjct: 1 DQLIPVINKLQDVFNTLG----SDPL-----DLPQIVVVGSQSSGKSSVLENIVGRDFLP 51
Query: 62 RGSGIVTRRPLVLQLHKL---EEGSR--EYAEFLHIPRKRFTDFAAVRKEIQDETDRETG 116
RGSGIVTRRPL+LQL L ++GS+ E+ EFLH P F DF+ +R+EI +TDR TG
Sbjct: 52 RGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTG 111
Query: 117 RTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCI 176
+ K IS+ PI+L IYSP+VVNLTL+DLPG+TKV V QP I Q I MV +YI+K N I
Sbjct: 112 KNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAI 171
Query: 177 ILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP 236
I+A++PAN DLA SDA+++++EVDP G+RT GV+TK+DLMDKGTDA ++L G+ L
Sbjct: 172 IVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLG 231
Query: 237 WIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIK 296
+IGV+NRSQ DI + + + E YF P YK +A R G+ +L+K L+K L I+
Sbjct: 232 FIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIR 291
Query: 297 SRIPGIQSLISKTVLELENELS 318
+P ++ +SK + +++ ELS
Sbjct: 292 DTLPDLKVKVSKMLSDVQGELS 313
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 126/372 (33%), Positives = 193/372 (51%), Gaps = 17/372 (4%)
Query: 3 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLP 61
NL S + R C L D AL D +LPAIA LE++ G LP
Sbjct: 15 NLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LP 71
Query: 62 RGSGIVTRRPLVLQLHKL-----EEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETG 116
RGSGIVTR PLVL+L KL G Y ++ +D + V KEI + G
Sbjct: 72 RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDY----EIEISDASEVEKEINKAQNAIAG 127
Query: 117 RTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCI 176
IS I L I S +V +LTLIDLPG+T+VAV QP I I+ +++ YI++ I
Sbjct: 128 EGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETI 187
Query: 177 ILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTD--AADILEGKSYRLK 234
L + P+N D+AT++A+ +++EVDP G+RT G+LTK DL+DKGT+ D++ + LK
Sbjct: 188 SLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLK 247
Query: 235 FPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQ--RMGSEHLAKMLSKHLE 292
++ V R Q +I + + A +RE+ +F P ++ L + + LA+ L+ L
Sbjct: 248 KGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELI 307
Query: 293 TVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYTIMEICRLFDQIYKEHLDG 352
T I +P +++ I +T + EL + G I D K++ +++ F+Q + G
Sbjct: 308 THICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQG 367
Query: 353 VRPGGDKIYYVF 364
G++ +F
Sbjct: 368 EETVGEEDIRLF 379
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 126/372 (33%), Positives = 193/372 (51%), Gaps = 17/372 (4%)
Query: 3 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLP 61
NL S + R C L D AL D +LPAIA LE++ G LP
Sbjct: 40 NLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LP 96
Query: 62 RGSGIVTRRPLVLQLHKL-----EEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETG 116
RGSGIVTR PLVL+L KL G Y ++ +D + V KEI + G
Sbjct: 97 RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDY----EIEISDASEVEKEINKAQNAIAG 152
Query: 117 RTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCI 176
IS I L I S +V +LTLIDLPG+T+VAV QP I I+ +++ YI++ I
Sbjct: 153 EGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETI 212
Query: 177 ILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTD--AADILEGKSYRLK 234
L + P+N D+AT++A+ +++EVDP G+RT G+LTK DL+DKGT+ D++ + LK
Sbjct: 213 SLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLK 272
Query: 235 FPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQ--RMGSEHLAKMLSKHLE 292
++ V R Q +I + + A +RE+ +F P ++ L + + LA+ L+ L
Sbjct: 273 KGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELI 332
Query: 293 TVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYTIMEICRLFDQIYKEHLDG 352
T I +P +++ I +T + EL + G I D K++ +++ F+Q + G
Sbjct: 333 THICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQG 392
Query: 353 VRPGGDKIYYVF 364
G++ +F
Sbjct: 393 EETVGEEDIRLF 404
>pdb|3L40|A Chain A, Crystal Structure Of S. Pombe Brc1 Brct5-Brct6 Domains
pdb|3L40|B Chain B, Crystal Structure Of S. Pombe Brc1 Brct5-Brct6 Domains
pdb|3L41|A Chain A, Crystal Structure Of S. Pombe Brc1 Brct5-Brct6 Domains In
Complex With Phosphorylated H2a
Length = 220
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 377 FDKQLSMENIRKL---ITEADGYQPHLIAPEQGYRRLIESSVVTIR---GPAEAAVDAVH 430
+DK+ S++N++KL IT HLIAP R++ +S GP +D ++
Sbjct: 16 YDKKPSIDNLKKLDMSITSNPSKCTHLIAP-----RILRTSKFLCSIPYGPCVVTMDWIN 70
Query: 431 ALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMR 469
+ LK H+ + E P L P E+G +L+R R
Sbjct: 71 SCLK--THEIVDEEPYLLNDPEKELELGCTLESALKRAR 107
>pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus
Thermophilus
Length = 426
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 302 IQSLISKTVLELENELSRLGKPIAADAGGKLYTIM-EICRLFDQIYK 347
+Q L +K LEL E R G P+ A+A T+ E R FD ++K
Sbjct: 231 VQHLSTKRGLELVREAKRAGLPVTAEATPHHLTLTEEALRTFDPLFK 277
>pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|2C3M|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3M|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3O|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3O|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3U|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3U|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3Y|A Chain A, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3Y|B Chain B, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C42|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C42|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2UZA|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2UZA|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
Length = 1231
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 26/157 (16%)
Query: 350 LDGVRPGGDKIYYV-------FDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIA 402
L+G++ GG + D LP+ +KR +K+L NI + D +
Sbjct: 500 LEGIKDGGTFVLNSPWSSLEDMDKHLPSGIKRTIANKKLKFYNIDAVKIATD------VG 553
Query: 403 PEQGYRRLIESSVVTIRG--PAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNA 460
+++++ + G P E AVD LLK+ +HKA + E + + + +
Sbjct: 554 LGGRINMIMQTAFFKLAGVLPFEKAVD----LLKKSIHKAYGKKGE--KIVKMNTDAVDQ 607
Query: 461 AIESLERMR--DTSKKATLQLVDMECSYLTVDFFRKL 495
A+ SL+ + D+ K A + + +T +FF+ +
Sbjct: 608 AVTSLQEFKYPDSWKDAP---AETKAEPMTNEFFKNV 641
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
Length = 769
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 253 DMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSR 298
D++ RR P Y HLA+R+G+ L+ K LE +K R
Sbjct: 563 DLVKTMRR------VDPVYIHLAERLGTPELSTAERKELENKLKER 602
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 383 MENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAIS 442
+E + K++TE G++ I Q Y R ++ V+++ A+V + ++ L +
Sbjct: 241 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 300
Query: 443 ETPELKQYPALRAEVGNAAI 462
E P KQ ++G++A+
Sbjct: 301 EEPFEKQ------QIGSSAM 314
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 383 MENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAIS 442
+E + K++TE G++ I Q Y R ++ V+++ A+V + ++ L +
Sbjct: 241 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 300
Query: 443 ETPELKQYPALRAEVGNAAI 462
E P KQ ++G++A+
Sbjct: 301 EEPFEKQ------QIGSSAM 314
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 383 MENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAIS 442
+E + K++TE G++ I Q Y R ++ V+++ A+V + ++ L +
Sbjct: 222 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 281
Query: 443 ETPELKQYPALRAEVGNAAI 462
E P KQ ++G++A+
Sbjct: 282 EEPFEKQ------QIGSSAM 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,894,983
Number of Sequences: 62578
Number of extensions: 680916
Number of successful extensions: 1908
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1870
Number of HSP's gapped (non-prelim): 29
length of query: 610
length of database: 14,973,337
effective HSP length: 105
effective length of query: 505
effective length of database: 8,402,647
effective search space: 4243336735
effective search space used: 4243336735
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)