Query 007263
Match_columns 610
No_of_seqs 350 out of 3078
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 21:12:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 4.5E-98 1E-102 823.6 47.7 598 1-610 4-657 (657)
2 PF01031 Dynamin_M: Dynamin ce 100.0 5.6E-46 1.2E-50 381.8 27.0 269 223-493 2-282 (295)
3 smart00053 DYNc Dynamin, GTPas 100.0 7.2E-46 1.6E-50 363.9 25.7 239 1-250 1-239 (240)
4 KOG0447 Dynamin-like GTP bindi 100.0 2.2E-31 4.8E-36 273.3 33.2 281 31-317 305-598 (980)
5 smart00302 GED Dynamin GTPase 99.9 5.3E-24 1.2E-28 178.1 12.3 89 516-606 4-92 (92)
6 COG1159 Era GTPase [General fu 99.9 2.6E-25 5.7E-30 218.3 -0.8 238 33-336 5-245 (298)
7 PF00350 Dynamin_N: Dynamin fa 99.9 5.3E-22 1.1E-26 187.1 16.7 167 37-213 1-168 (168)
8 PF02212 GED: Dynamin GTPase e 99.9 8.6E-22 1.9E-26 165.4 11.7 89 516-606 4-92 (92)
9 TIGR00436 era GTP-binding prot 99.8 1E-19 2.2E-24 185.0 11.8 235 35-335 1-236 (270)
10 PRK00089 era GTPase Era; Revie 99.8 8.8E-19 1.9E-23 180.4 11.9 237 33-335 4-241 (292)
11 PRK15494 era GTPase Era; Provi 99.7 1.4E-17 3E-22 174.1 14.2 235 35-335 53-288 (339)
12 PRK09866 hypothetical protein; 99.7 1.4E-13 3.1E-18 148.6 42.3 213 35-257 70-350 (741)
13 KOG1423 Ras-like GTPase ERA [C 99.7 2.5E-17 5.5E-22 160.7 9.7 221 33-313 71-321 (379)
14 PF02421 FeoB_N: Ferrous iron 99.7 5.8E-18 1.3E-22 155.2 4.7 148 36-252 2-153 (156)
15 COG0486 ThdF Predicted GTPase 99.7 3.7E-15 8.1E-20 155.3 20.6 179 4-256 194-372 (454)
16 COG1160 Predicted GTPases [Gen 99.6 1.6E-15 3.6E-20 157.6 14.4 159 35-258 4-163 (444)
17 TIGR03156 GTP_HflX GTP-binding 99.6 5.8E-14 1.2E-18 147.2 16.4 157 32-253 187-345 (351)
18 COG1084 Predicted GTPase [Gene 99.6 3.3E-14 7.1E-19 141.4 13.4 156 4-219 137-296 (346)
19 PRK12298 obgE GTPase CgtA; Rev 99.6 5.1E-14 1.1E-18 149.2 15.5 181 33-275 158-348 (390)
20 PRK05291 trmE tRNA modificatio 99.6 1.4E-13 3E-18 149.2 18.9 156 33-259 214-369 (449)
21 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 7.8E-14 1.7E-18 134.9 12.8 174 36-267 2-192 (196)
22 TIGR00450 mnmE_trmE_thdF tRNA 99.5 5.2E-13 1.1E-17 144.0 20.4 157 32-257 201-357 (442)
23 PRK11058 GTPase HflX; Provisio 99.5 1.6E-13 3.5E-18 147.1 16.2 126 33-217 196-323 (426)
24 cd04163 Era Era subfamily. Er 99.5 2.7E-13 5.9E-18 126.2 12.8 123 34-218 3-126 (168)
25 COG0218 Predicted GTPase [Gene 99.5 6.3E-13 1.4E-17 124.6 14.6 127 33-220 23-152 (200)
26 PRK12299 obgE GTPase CgtA; Rev 99.5 4.4E-13 9.6E-18 139.3 14.1 163 33-256 157-324 (335)
27 cd01878 HflX HflX subfamily. 99.5 7.9E-13 1.7E-17 128.6 14.1 156 32-251 39-196 (204)
28 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 4.3E-13 9.3E-18 125.8 11.4 117 35-218 1-117 (168)
29 PF01926 MMR_HSR1: 50S ribosom 99.4 7.2E-13 1.6E-17 116.8 11.5 115 36-212 1-116 (116)
30 cd01897 NOG NOG1 is a nucleola 99.4 1.5E-12 3.3E-17 122.2 13.3 155 35-252 1-160 (168)
31 cd01895 EngA2 EngA2 subfamily. 99.4 1.9E-12 4E-17 121.6 13.7 128 34-219 2-129 (174)
32 TIGR03594 GTPase_EngA ribosome 99.4 2.7E-12 5.8E-17 139.6 16.6 125 33-216 171-296 (429)
33 COG1160 Predicted GTPases [Gen 99.4 7.3E-13 1.6E-17 138.0 11.4 156 33-246 177-334 (444)
34 PRK03003 GTP-binding protein D 99.4 3.5E-12 7.5E-17 139.8 17.4 127 33-218 210-337 (472)
35 PRK00454 engB GTP-binding prot 99.4 1.4E-12 3E-17 125.9 12.2 163 33-256 23-190 (196)
36 cd01898 Obg Obg subfamily. Th 99.4 1.2E-12 2.5E-17 123.2 11.4 110 136-252 48-163 (170)
37 COG2262 HflX GTPases [General 99.4 3.1E-12 6.8E-17 131.3 15.2 161 32-256 190-352 (411)
38 cd04112 Rab26 Rab26 subfamily. 99.4 1.8E-12 3.8E-17 124.9 12.5 116 137-265 51-168 (191)
39 PRK03003 GTP-binding protein D 99.4 1.9E-12 4.2E-17 141.8 14.1 160 33-258 37-197 (472)
40 TIGR03598 GTPase_YsxC ribosome 99.4 1.6E-12 3.5E-17 123.8 11.7 126 32-218 16-144 (179)
41 COG0370 FeoB Fe2+ transport sy 99.4 1.4E-11 3.1E-16 134.0 19.8 156 35-257 4-161 (653)
42 TIGR03594 GTPase_EngA ribosome 99.4 3.3E-12 7.2E-17 138.8 14.6 109 136-256 47-156 (429)
43 cd01861 Rab6 Rab6 subfamily. 99.4 2E-12 4.3E-17 120.5 11.0 152 36-253 2-155 (161)
44 cd01867 Rab8_Rab10_Rab13_like 99.4 1.8E-12 3.9E-17 121.9 10.7 155 34-255 3-160 (167)
45 PRK00093 GTP-binding protein D 99.4 3.9E-12 8.5E-17 138.5 14.7 157 34-256 1-158 (435)
46 cd01868 Rab11_like Rab11-like. 99.4 2.6E-12 5.6E-17 120.3 11.5 155 34-254 3-159 (165)
47 cd01865 Rab3 Rab3 subfamily. 99.4 3E-12 6.6E-17 120.1 11.3 107 136-255 50-158 (165)
48 PRK00093 GTP-binding protein D 99.4 1.4E-11 2.9E-16 134.3 18.0 128 33-218 172-299 (435)
49 PRK04213 GTP-binding protein; 99.4 5.7E-12 1.2E-16 122.3 13.0 124 33-218 8-145 (201)
50 cd04145 M_R_Ras_like M-Ras/R-R 99.4 4.8E-12 1E-16 118.1 12.0 104 136-253 50-157 (164)
51 cd04164 trmE TrmE (MnmE, ThdF, 99.4 1.3E-11 2.9E-16 113.9 14.8 99 136-250 49-147 (157)
52 cd01866 Rab2 Rab2 subfamily. 99.4 6.1E-12 1.3E-16 118.4 12.5 155 34-255 4-161 (168)
53 PRK12296 obgE GTPase CgtA; Rev 99.4 5.2E-12 1.1E-16 136.3 13.4 161 33-255 158-335 (500)
54 TIGR02729 Obg_CgtA Obg family 99.4 5.2E-12 1.1E-16 131.3 12.6 159 33-252 156-321 (329)
55 cd01894 EngA1 EngA1 subfamily. 99.4 3E-12 6.6E-17 118.3 9.7 77 136-219 45-121 (157)
56 PRK12297 obgE GTPase CgtA; Rev 99.3 7.3E-12 1.6E-16 133.6 13.7 120 34-216 158-287 (424)
57 cd00880 Era_like Era (E. coli 99.3 1.1E-11 2.3E-16 114.1 13.1 107 135-249 44-153 (163)
58 PRK09518 bifunctional cytidyla 99.3 1.7E-11 3.8E-16 140.6 17.5 127 33-218 449-576 (712)
59 smart00173 RAS Ras subfamily o 99.3 7.8E-12 1.7E-16 116.9 12.0 106 136-254 48-156 (164)
60 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.3 6.5E-12 1.4E-16 117.8 11.5 105 137-255 52-159 (166)
61 cd04119 RJL RJL (RabJ-Like) su 99.3 5.4E-12 1.2E-16 118.0 10.7 152 36-254 2-161 (168)
62 cd01879 FeoB Ferrous iron tran 99.3 6.9E-12 1.5E-16 116.2 11.2 105 136-252 43-149 (158)
63 cd04171 SelB SelB subfamily. 99.3 7.7E-12 1.7E-16 116.6 11.4 102 135-252 50-158 (164)
64 cd01890 LepA LepA subfamily. 99.3 6.9E-12 1.5E-16 119.1 11.2 68 135-217 66-133 (179)
65 PRK09554 feoB ferrous iron tra 99.3 1.7E-11 3.7E-16 140.1 16.4 161 34-257 3-165 (772)
66 PF04548 AIG1: AIG1 family; I 99.3 3.8E-12 8.3E-17 124.6 9.5 150 36-243 2-163 (212)
67 KOG0448 Mitofusin 1 GTPase, in 99.3 4.2E-11 9.1E-16 128.9 18.0 172 33-227 108-285 (749)
68 cd00881 GTP_translation_factor 99.3 9.6E-12 2.1E-16 118.8 12.1 69 135-218 61-129 (189)
69 cd04142 RRP22 RRP22 subfamily. 99.3 1.1E-11 2.4E-16 120.0 12.6 159 36-253 2-167 (198)
70 cd04113 Rab4 Rab4 subfamily. 99.3 8.3E-12 1.8E-16 116.4 11.2 151 36-253 2-155 (161)
71 KOG1191 Mitochondrial GTPase [ 99.3 7.6E-11 1.6E-15 122.9 19.1 145 12-220 250-406 (531)
72 cd04136 Rap_like Rap-like subf 99.3 8.6E-12 1.9E-16 116.3 11.1 104 136-253 49-156 (163)
73 cd01862 Rab7 Rab7 subfamily. 99.3 8.6E-12 1.9E-16 117.4 11.1 107 137-256 50-163 (172)
74 smart00175 RAB Rab subfamily o 99.3 1.1E-11 2.3E-16 115.7 11.3 105 137-255 50-157 (164)
75 cd04122 Rab14 Rab14 subfamily. 99.3 1.6E-11 3.5E-16 115.2 12.2 103 137-252 52-156 (166)
76 cd04138 H_N_K_Ras_like H-Ras/N 99.3 1.4E-11 3E-16 114.5 11.6 103 137-253 50-155 (162)
77 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 2.3E-11 4.9E-16 116.4 13.3 115 36-217 5-123 (183)
78 cd04101 RabL4 RabL4 (Rab-like4 99.3 1.6E-11 3.5E-16 114.7 12.0 104 136-253 52-157 (164)
79 PRK09518 bifunctional cytidyla 99.3 1.6E-11 3.6E-16 140.8 14.5 161 33-259 274-435 (712)
80 cd04109 Rab28 Rab28 subfamily. 99.3 1.1E-11 2.3E-16 121.8 11.0 156 36-256 2-162 (215)
81 cd04157 Arl6 Arl6 subfamily. 99.3 2.1E-11 4.6E-16 113.5 12.4 105 136-253 45-157 (162)
82 cd00154 Rab Rab family. Rab G 99.3 1.1E-11 2.4E-16 114.2 10.4 150 35-251 1-153 (159)
83 cd04111 Rab39 Rab39 subfamily. 99.3 1.5E-11 3.3E-16 120.3 11.6 108 137-258 53-164 (211)
84 cd04175 Rap1 Rap1 subgroup. T 99.3 1.8E-11 3.9E-16 114.6 11.6 104 136-253 49-156 (164)
85 cd04139 RalA_RalB RalA/RalB su 99.3 2.1E-11 4.5E-16 113.7 11.9 106 136-254 48-156 (164)
86 cd01864 Rab19 Rab19 subfamily. 99.3 1.2E-11 2.7E-16 115.8 10.3 71 136-219 52-124 (165)
87 COG0699 Predicted GTPases (dyn 99.3 1.2E-09 2.6E-14 122.4 28.2 469 86-601 3-542 (546)
88 cd04104 p47_IIGP_like p47 (47- 99.3 2.7E-11 5.8E-16 117.3 12.8 120 35-217 2-121 (197)
89 cd04108 Rab36_Rab34 Rab34/Rab3 99.3 1.5E-11 3.3E-16 116.1 10.7 157 36-259 2-164 (170)
90 cd04106 Rab23_lke Rab23-like s 99.3 1.6E-11 3.4E-16 114.5 10.7 103 136-252 51-155 (162)
91 cd04160 Arfrp1 Arfrp1 subfamil 99.3 3.1E-11 6.7E-16 113.2 12.5 103 135-251 49-160 (167)
92 cd04127 Rab27A Rab27a subfamil 99.3 1.8E-11 3.9E-16 116.4 10.8 104 137-254 64-171 (180)
93 cd04154 Arl2 Arl2 subfamily. 99.3 3.3E-11 7.2E-16 114.0 12.5 149 33-252 13-167 (173)
94 cd01860 Rab5_related Rab5-rela 99.3 2.7E-11 5.8E-16 113.0 11.7 151 36-253 3-156 (163)
95 cd01881 Obg_like The Obg-like 99.3 2.1E-11 4.5E-16 115.1 10.9 79 135-219 43-136 (176)
96 PRK15467 ethanolamine utilizat 99.3 5E-11 1.1E-15 111.1 13.2 104 140-258 41-145 (158)
97 cd04120 Rab12 Rab12 subfamily. 99.3 2.5E-11 5.5E-16 117.7 11.6 107 136-255 49-158 (202)
98 cd04114 Rab30 Rab30 subfamily. 99.3 2.9E-11 6.2E-16 113.6 11.4 119 33-218 6-127 (169)
99 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 2.6E-11 5.7E-16 117.7 11.5 107 136-256 50-164 (201)
100 PLN03118 Rab family protein; P 99.3 3.8E-11 8.2E-16 117.6 12.3 113 136-261 62-178 (211)
101 TIGR00991 3a0901s02IAP34 GTP-b 99.3 7.8E-11 1.7E-15 119.2 14.6 140 9-218 22-168 (313)
102 cd04125 RabA_like RabA-like su 99.3 3.3E-11 7.2E-16 115.6 11.5 110 136-258 49-160 (188)
103 cd01853 Toc34_like Toc34-like 99.3 7.7E-11 1.7E-15 117.6 14.3 129 33-219 30-165 (249)
104 cd04144 Ras2 Ras2 subfamily. 99.3 3.8E-11 8.2E-16 115.5 11.7 109 137-258 48-161 (190)
105 cd04176 Rap2 Rap2 subgroup. T 99.3 3.4E-11 7.4E-16 112.5 10.7 103 137-252 50-155 (163)
106 cd04123 Rab21 Rab21 subfamily. 99.2 4.8E-11 1E-15 110.9 11.6 105 137-254 50-156 (162)
107 KOG1954 Endocytosis/signaling 99.2 2.5E-11 5.4E-16 121.6 10.0 169 32-219 56-227 (532)
108 TIGR02528 EutP ethanolamine ut 99.2 6.2E-11 1.4E-15 108.1 12.1 98 139-251 38-136 (142)
109 cd04159 Arl10_like Arl10-like 99.2 6.9E-11 1.5E-15 109.0 12.4 71 136-219 44-117 (159)
110 cd04140 ARHI_like ARHI subfami 99.2 4.3E-11 9.3E-16 112.2 11.1 106 136-254 49-159 (165)
111 cd04156 ARLTS1 ARLTS1 subfamil 99.2 6.9E-11 1.5E-15 110.0 12.3 68 136-217 44-115 (160)
112 cd04110 Rab35 Rab35 subfamily. 99.2 4.9E-11 1.1E-15 115.7 11.6 158 33-257 5-164 (199)
113 cd00876 Ras Ras family. The R 99.2 3.9E-11 8.5E-16 111.2 10.3 150 36-252 1-153 (160)
114 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.2 7E-11 1.5E-15 111.8 12.0 107 136-255 50-159 (172)
115 PTZ00369 Ras-like protein; Pro 99.2 7.8E-11 1.7E-15 113.2 12.2 104 137-253 54-160 (189)
116 cd04151 Arl1 Arl1 subfamily. 99.2 6.6E-11 1.4E-15 110.0 11.4 70 136-218 43-115 (158)
117 COG3596 Predicted GTPase [Gene 99.2 1.8E-10 4E-15 112.4 14.5 124 33-219 37-164 (296)
118 cd04158 ARD1 ARD1 subfamily. 99.2 1E-10 2.2E-15 110.2 12.6 111 136-260 43-161 (169)
119 smart00178 SAR Sar1p-like memb 99.2 1.9E-10 4.2E-15 110.0 14.5 114 33-217 16-132 (184)
120 cd01893 Miro1 Miro1 subfamily. 99.2 6.8E-11 1.5E-15 111.0 11.1 70 136-219 47-119 (166)
121 PF10662 PduV-EutP: Ethanolami 99.2 6.4E-11 1.4E-15 106.4 10.2 98 140-254 40-140 (143)
122 cd04124 RabL2 RabL2 subfamily. 99.2 6.9E-11 1.5E-15 110.4 11.0 102 136-254 49-152 (161)
123 cd04177 RSR1 RSR1 subgroup. R 99.2 7.8E-11 1.7E-15 110.8 11.4 103 136-251 49-155 (168)
124 cd00157 Rho Rho (Ras homology) 99.2 3E-11 6.5E-16 113.6 8.2 69 137-219 49-120 (171)
125 cd01876 YihA_EngB The YihA (En 99.2 1.3E-10 2.9E-15 108.3 12.6 78 137-219 46-126 (170)
126 PLN03108 Rab family protein; P 99.2 8.4E-11 1.8E-15 115.0 11.4 153 34-252 6-160 (210)
127 cd00878 Arf_Arl Arf (ADP-ribos 99.2 1.9E-10 4.1E-15 106.8 13.2 71 136-219 43-116 (158)
128 cd01863 Rab18 Rab18 subfamily. 99.2 1.4E-10 3.1E-15 107.9 12.4 101 136-251 49-153 (161)
129 PLN03110 Rab GTPase; Provision 99.2 7.8E-11 1.7E-15 115.7 11.1 153 34-252 12-166 (216)
130 cd04118 Rab24 Rab24 subfamily. 99.2 9.9E-11 2.1E-15 112.7 11.3 107 137-257 51-163 (193)
131 cd04147 Ras_dva Ras-dva subfam 99.2 1.1E-10 2.4E-15 113.0 11.6 109 136-258 47-161 (198)
132 cd04117 Rab15 Rab15 subfamily. 99.2 9.2E-11 2E-15 109.6 10.6 151 36-253 2-155 (161)
133 cd04137 RheB Rheb (Ras Homolog 99.2 1.4E-10 2.9E-15 110.4 11.7 108 137-258 50-161 (180)
134 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.2 1.3E-10 2.7E-15 110.2 11.4 68 136-217 59-130 (174)
135 cd04161 Arl2l1_Arl13_like Arl2 99.2 1.4E-10 3E-15 109.2 11.4 70 136-219 43-116 (167)
136 cd04115 Rab33B_Rab33A Rab33B/R 99.2 9.2E-11 2E-15 110.6 10.2 96 136-244 51-150 (170)
137 PF00009 GTP_EFTU: Elongation 99.2 2.1E-11 4.5E-16 117.1 5.4 69 133-216 67-135 (188)
138 cd04149 Arf6 Arf6 subfamily. 99.2 1.6E-10 3.6E-15 108.8 11.3 69 136-218 53-125 (168)
139 cd00879 Sar1 Sar1 subfamily. 99.2 3.5E-10 7.7E-15 108.6 13.9 115 32-217 17-134 (190)
140 cd04116 Rab9 Rab9 subfamily. 99.2 2.1E-10 4.4E-15 108.0 11.9 150 33-252 4-163 (170)
141 cd04132 Rho4_like Rho4-like su 99.2 2.1E-10 4.5E-15 109.9 11.8 158 36-259 2-166 (187)
142 cd04146 RERG_RasL11_like RERG/ 99.2 1.2E-10 2.5E-15 109.2 9.9 104 137-252 48-156 (165)
143 cd01889 SelB_euk SelB subfamil 99.2 2E-10 4.4E-15 110.6 11.2 68 135-218 67-135 (192)
144 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 4.2E-10 9.1E-15 105.5 13.0 112 36-218 1-114 (164)
145 smart00174 RHO Rho (Ras homolo 99.2 9.8E-11 2.1E-15 110.6 8.7 68 137-218 47-117 (174)
146 cd01891 TypA_BipA TypA (tyrosi 99.2 5E-10 1.1E-14 108.1 13.8 69 135-218 64-132 (194)
147 cd04121 Rab40 Rab40 subfamily. 99.1 2.5E-10 5.4E-15 109.6 11.2 108 136-257 55-164 (189)
148 PLN03071 GTP-binding nuclear p 99.1 2E-10 4.3E-15 113.1 10.7 107 136-258 62-170 (219)
149 PF05049 IIGP: Interferon-indu 99.1 1.8E-10 3.9E-15 119.6 10.8 127 4-215 17-153 (376)
150 cd04166 CysN_ATPS CysN_ATPS su 99.1 1.8E-10 3.9E-15 112.5 10.1 71 133-218 74-145 (208)
151 cd04165 GTPBP1_like GTPBP1-lik 99.1 1.7E-10 3.7E-15 113.6 9.6 72 133-218 81-153 (224)
152 cd04128 Spg1 Spg1p. Spg1p (se 99.1 2.9E-10 6.4E-15 108.5 10.6 68 136-217 49-118 (182)
153 cd00877 Ran Ran (Ras-related n 99.1 2.2E-10 4.7E-15 107.7 9.5 106 136-257 49-156 (166)
154 cd04155 Arl3 Arl3 subfamily. 99.1 6E-10 1.3E-14 105.1 12.5 115 33-218 13-130 (173)
155 smart00177 ARF ARF-like small 99.1 6.8E-10 1.5E-14 105.3 12.9 69 136-218 57-129 (175)
156 TIGR00231 small_GTP small GTP- 99.1 5.9E-10 1.3E-14 102.3 12.1 29 35-64 2-30 (161)
157 cd04148 RGK RGK subfamily. Th 99.1 8.9E-10 1.9E-14 108.6 14.1 110 136-260 50-163 (221)
158 cd04150 Arf1_5_like Arf1-Arf5- 99.1 3.7E-10 8E-15 105.3 10.7 69 136-218 44-116 (159)
159 cd01850 CDC_Septin CDC/Septin. 99.1 5.4E-10 1.2E-14 113.6 12.5 136 36-218 6-158 (276)
160 PTZ00133 ADP-ribosylation fact 99.1 8.1E-10 1.8E-14 105.5 12.9 69 136-217 61-132 (182)
161 PLN00223 ADP-ribosylation fact 99.1 9.7E-10 2.1E-14 104.9 13.4 69 136-218 61-133 (181)
162 cd00882 Ras_like_GTPase Ras-li 99.1 3.3E-10 7.2E-15 102.7 9.7 101 136-249 45-149 (157)
163 TIGR00437 feoB ferrous iron tr 99.1 1.9E-10 4.1E-15 128.6 9.7 110 136-257 41-152 (591)
164 cd01874 Cdc42 Cdc42 subfamily. 99.1 3.3E-10 7.1E-15 107.5 9.9 69 136-218 49-120 (175)
165 PRK09602 translation-associate 99.1 2.6E-09 5.7E-14 113.5 17.1 39 35-73 2-40 (396)
166 TIGR00487 IF-2 translation ini 99.1 6.6E-10 1.4E-14 123.7 13.0 119 30-217 83-201 (587)
167 cd04126 Rab20 Rab20 subfamily. 99.1 9.5E-10 2.1E-14 108.0 12.6 69 136-217 44-114 (220)
168 CHL00189 infB translation init 99.1 5.4E-10 1.2E-14 126.2 12.2 122 30-217 240-361 (742)
169 cd01892 Miro2 Miro2 subfamily. 99.1 6.2E-10 1.4E-14 104.9 10.8 120 33-218 3-123 (169)
170 TIGR00491 aIF-2 translation in 99.1 1.3E-09 2.8E-14 121.2 14.6 133 33-217 3-135 (590)
171 cd01870 RhoA_like RhoA-like su 99.1 1E-09 2.2E-14 103.7 11.0 116 35-218 2-120 (175)
172 cd01896 DRG The developmentall 99.1 1.7E-09 3.6E-14 107.4 12.8 23 36-58 2-24 (233)
173 cd04143 Rhes_like Rhes_like su 99.1 1.6E-09 3.5E-14 108.4 12.7 107 136-256 48-167 (247)
174 cd01886 EF-G Elongation factor 99.0 8.9E-10 1.9E-14 111.6 10.9 68 135-217 63-130 (270)
175 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.0 3.9E-10 8.5E-15 104.0 7.3 160 33-259 21-184 (221)
176 cd01884 EF_Tu EF-Tu subfamily. 99.0 7E-10 1.5E-14 106.9 9.3 70 134-218 63-133 (195)
177 cd04169 RF3 RF3 subfamily. Pe 99.0 2E-09 4.4E-14 108.9 13.0 136 35-218 3-138 (267)
178 cd04130 Wrch_1 Wrch-1 subfamil 99.0 7.5E-10 1.6E-14 104.7 9.4 69 136-218 48-119 (173)
179 cd04168 TetM_like Tet(M)-like 99.0 1E-09 2.2E-14 109.2 10.6 68 135-217 63-130 (237)
180 PRK05306 infB translation init 99.0 1.5E-09 3.2E-14 123.8 13.2 117 31-217 287-403 (787)
181 TIGR00993 3a0901s04IAP86 chlor 99.0 1.8E-09 3.9E-14 117.6 12.8 126 35-218 119-251 (763)
182 TIGR00475 selB selenocysteine- 99.0 1.2E-09 2.5E-14 122.2 11.6 107 136-258 50-164 (581)
183 cd01885 EF2 EF2 (for archaea a 99.0 2.1E-09 4.5E-14 105.5 11.9 67 135-216 72-138 (222)
184 cd04134 Rho3 Rho3 subfamily. 99.0 7.8E-10 1.7E-14 106.3 8.7 69 136-218 48-119 (189)
185 cd01888 eIF2_gamma eIF2-gamma 99.0 1.6E-09 3.5E-14 105.3 10.8 106 136-256 83-195 (203)
186 cd04133 Rop_like Rop subfamily 99.0 1.6E-09 3.5E-14 102.8 9.9 115 36-218 3-120 (176)
187 PF00071 Ras: Ras family; Int 99.0 1E-09 2.2E-14 102.2 8.5 151 36-252 1-153 (162)
188 cd01871 Rac1_like Rac1-like su 99.0 1.8E-09 3.8E-14 102.4 10.2 69 136-218 49-120 (174)
189 TIGR01393 lepA GTP-binding pro 99.0 2.1E-09 4.6E-14 120.2 12.3 168 34-256 3-176 (595)
190 cd04135 Tc10 TC10 subfamily. 99.0 1.1E-09 2.4E-14 103.4 8.6 68 137-218 49-119 (174)
191 cd04170 EF-G_bact Elongation f 99.0 2.9E-09 6.2E-14 108.3 11.3 69 135-218 63-131 (268)
192 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.0 4.1E-09 9E-14 104.1 11.9 117 33-217 12-131 (232)
193 cd04105 SR_beta Signal recogni 99.0 5.4E-09 1.2E-13 101.6 12.2 70 136-218 48-124 (203)
194 smart00176 RAN Ran (Ras-relate 99.0 2.3E-09 5E-14 103.8 9.5 108 136-259 44-153 (200)
195 cd01899 Ygr210 Ygr210 subfamil 99.0 7.5E-09 1.6E-13 106.9 13.5 110 37-183 1-110 (318)
196 cd04167 Snu114p Snu114p subfam 98.9 4.6E-09 1E-13 102.9 11.2 66 136-216 71-136 (213)
197 KOG1489 Predicted GTP-binding 98.9 1.5E-09 3.3E-14 107.5 7.5 155 33-252 195-359 (366)
198 cd04131 Rnd Rnd subfamily. Th 98.9 3.6E-09 7.9E-14 100.6 10.0 114 36-217 3-119 (178)
199 PRK05433 GTP-binding protein L 98.9 6.3E-09 1.4E-13 116.6 13.4 170 33-257 6-181 (600)
200 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.9 3.4E-09 7.3E-14 101.2 9.4 116 34-217 5-123 (182)
201 PRK12317 elongation factor 1-a 98.9 2.5E-09 5.5E-14 115.9 9.6 144 34-217 6-153 (425)
202 COG1163 DRG Predicted GTPase [ 98.9 3.7E-09 8E-14 105.3 9.7 89 35-184 64-152 (365)
203 cd01875 RhoG RhoG subfamily. 98.9 5E-09 1.1E-13 100.8 10.5 116 35-218 4-122 (191)
204 cd04102 RabL3 RabL3 (Rab-like3 98.9 1.2E-08 2.5E-13 98.9 12.7 95 137-245 55-175 (202)
205 PRK10512 selenocysteinyl-tRNA- 98.9 4.8E-09 1E-13 117.7 10.7 110 134-258 49-164 (614)
206 PRK04004 translation initiatio 98.9 1.2E-08 2.7E-13 113.8 13.9 66 136-216 71-136 (586)
207 KOG0084 GTPase Rab1/YPT1, smal 98.9 8.3E-09 1.8E-13 95.7 9.8 152 32-250 7-162 (205)
208 KOG0078 GTP-binding protein SE 98.9 6.5E-09 1.4E-13 97.8 9.2 156 31-252 9-166 (207)
209 KOG0092 GTPase Rab5/YPT51 and 98.9 2.6E-09 5.7E-14 98.6 6.3 161 35-262 6-169 (200)
210 cd01883 EF1_alpha Eukaryotic e 98.9 5.4E-09 1.2E-13 102.9 8.2 71 134-217 75-151 (219)
211 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.9 1.3E-08 2.8E-13 100.1 10.7 115 36-218 3-120 (222)
212 TIGR00484 EF-G translation elo 98.9 8.1E-09 1.8E-13 118.4 10.5 134 33-218 9-142 (689)
213 KOG1490 GTP-binding protein CR 98.9 6.9E-09 1.5E-13 108.3 8.8 154 6-219 139-297 (620)
214 cd01873 RhoBTB RhoBTB subfamil 98.8 1.5E-08 3.3E-13 97.7 9.6 66 136-217 66-134 (195)
215 PF00025 Arf: ADP-ribosylation 98.8 9.7E-09 2.1E-13 97.4 7.8 114 33-218 13-130 (175)
216 cd04129 Rho2 Rho2 subfamily. 98.8 1.8E-08 3.8E-13 96.7 9.0 67 137-217 50-119 (187)
217 TIGR02034 CysN sulfate adenyly 98.8 2.2E-08 4.7E-13 107.7 10.5 69 134-218 78-148 (406)
218 CHL00071 tufA elongation facto 98.8 1.7E-08 3.6E-13 108.7 9.4 70 134-218 73-143 (409)
219 PRK00741 prfC peptide chain re 98.8 5E-08 1.1E-12 107.6 13.2 138 33-218 9-146 (526)
220 PF00735 Septin: Septin; Inte 98.8 2.3E-08 5E-13 101.6 9.2 138 36-219 6-158 (281)
221 PRK09435 membrane ATPase/prote 98.7 1.3E-07 2.8E-12 97.9 14.2 136 135-296 148-293 (332)
222 PRK12739 elongation factor G; 98.7 3.7E-08 8E-13 113.0 11.2 134 33-218 7-140 (691)
223 PLN03127 Elongation factor Tu; 98.7 3.3E-08 7.2E-13 107.0 10.2 70 134-218 122-192 (447)
224 PF08477 Miro: Miro-like prote 98.7 1.6E-08 3.6E-13 89.0 6.5 63 138-214 52-119 (119)
225 PTZ00258 GTP-binding protein; 98.7 4.7E-08 1E-12 102.9 10.8 108 32-183 19-126 (390)
226 TIGR03680 eif2g_arch translati 98.7 3.3E-08 7.2E-13 106.3 9.9 68 136-218 80-149 (406)
227 PRK00007 elongation factor G; 98.7 4.7E-08 1E-12 112.1 11.7 134 33-218 9-142 (693)
228 COG0536 Obg Predicted GTPase [ 98.7 3.6E-08 7.7E-13 99.2 9.1 124 36-221 161-293 (369)
229 COG1100 GTPase SAR1 and relate 98.7 4.7E-08 1E-12 96.0 9.8 118 35-220 6-128 (219)
230 cd01900 YchF YchF subfamily. 98.7 4.1E-08 8.9E-13 99.0 9.5 103 37-183 1-103 (274)
231 PRK05124 cysN sulfate adenylyl 98.7 7.9E-08 1.7E-12 105.1 12.4 147 32-218 25-175 (474)
232 PRK05506 bifunctional sulfate 98.7 2E-08 4.3E-13 114.2 7.8 70 133-217 101-171 (632)
233 PRK10218 GTP-binding protein; 98.7 9E-08 1.9E-12 106.9 12.7 69 134-217 66-134 (607)
234 TIGR01394 TypA_BipA GTP-bindin 98.7 6.4E-08 1.4E-12 108.2 11.1 68 135-217 63-130 (594)
235 KOG0093 GTPase Rab3, small G p 98.7 5.5E-08 1.2E-12 85.5 8.3 119 35-219 22-142 (193)
236 PRK12735 elongation factor Tu; 98.7 4E-08 8.7E-13 105.3 9.2 70 134-218 73-143 (396)
237 TIGR00503 prfC peptide chain r 98.7 1.1E-07 2.4E-12 104.9 12.3 137 33-217 10-146 (527)
238 TIGR00490 aEF-2 translation el 98.7 1.1E-07 2.3E-12 109.5 12.1 135 33-217 18-152 (720)
239 TIGR00483 EF-1_alpha translati 98.7 3.1E-08 6.7E-13 107.5 7.3 68 135-217 84-155 (426)
240 TIGR02836 spore_IV_A stage IV 98.7 1.7E-07 3.7E-12 97.2 12.1 149 36-218 19-195 (492)
241 KOG0410 Predicted GTP binding 98.7 6E-08 1.3E-12 96.4 8.5 155 30-253 174-334 (410)
242 PRK09601 GTP-binding protein Y 98.7 1.3E-07 2.7E-12 98.6 11.1 102 35-183 3-107 (364)
243 cd04103 Centaurin_gamma Centau 98.7 1.4E-07 3E-12 87.9 10.3 99 137-253 48-152 (158)
244 cd01882 BMS1 Bms1. Bms1 is an 98.7 9.5E-08 2.1E-12 94.4 9.6 70 132-219 79-149 (225)
245 PLN00023 GTP-binding protein; 98.6 1.2E-07 2.6E-12 96.9 10.0 68 137-218 84-166 (334)
246 COG4917 EutP Ethanolamine util 98.6 7.5E-08 1.6E-12 82.6 7.1 30 35-64 2-31 (148)
247 PRK07560 elongation factor EF- 98.6 1.4E-07 3.1E-12 108.7 11.7 133 33-216 19-152 (731)
248 PRK00049 elongation factor Tu; 98.6 8E-08 1.7E-12 103.0 8.9 69 134-217 73-142 (396)
249 TIGR00485 EF-Tu translation el 98.6 1.3E-07 2.9E-12 101.3 10.1 130 35-218 13-143 (394)
250 PLN03126 Elongation factor Tu; 98.6 1.2E-07 2.7E-12 103.2 9.8 70 134-218 142-212 (478)
251 COG2229 Predicted GTPase [Gene 98.6 7.4E-07 1.6E-11 82.2 13.1 150 32-243 8-161 (187)
252 PF09439 SRPRB: Signal recogni 98.6 1.3E-07 2.8E-12 89.0 8.3 118 33-218 2-127 (181)
253 PRK13351 elongation factor G; 98.6 2.5E-07 5.5E-12 106.4 12.4 134 33-218 7-140 (687)
254 PTZ00132 GTP-binding nuclear p 98.6 3.4E-07 7.4E-12 89.8 11.7 104 136-256 58-164 (215)
255 KOG0075 GTP-binding ADP-ribosy 98.6 8.8E-08 1.9E-12 84.3 6.5 73 134-219 63-138 (186)
256 PRK12736 elongation factor Tu; 98.6 1.9E-07 4.1E-12 100.1 10.6 70 134-218 73-143 (394)
257 KOG0095 GTPase Rab30, small G 98.6 1.1E-07 2.4E-12 83.6 6.7 122 32-219 5-128 (213)
258 PRK04000 translation initiatio 98.6 3.7E-07 8E-12 98.3 11.8 67 136-218 85-154 (411)
259 PTZ00327 eukaryotic translatio 98.5 3.2E-07 7E-12 99.3 10.7 67 137-218 118-186 (460)
260 PTZ00416 elongation factor 2; 98.5 2.7E-07 5.9E-12 107.6 10.9 65 137-216 93-157 (836)
261 KOG0073 GTP-binding ADP-ribosy 98.5 9.3E-07 2E-11 79.6 11.2 156 34-261 16-179 (185)
262 PLN00116 translation elongatio 98.5 4.1E-07 8.9E-12 106.3 11.0 66 136-216 98-163 (843)
263 KOG2486 Predicted GTPase [Gene 98.5 4.6E-07 9.9E-12 88.6 9.2 129 31-219 133-264 (320)
264 KOG0091 GTPase Rab39, small G 98.5 3.2E-07 7E-12 82.2 6.2 108 136-256 58-169 (213)
265 COG5019 CDC3 Septin family pro 98.4 1.4E-06 3.1E-11 88.8 11.6 82 136-219 82-178 (373)
266 PLN00043 elongation factor 1-a 98.4 4.5E-07 9.8E-12 98.4 8.5 70 134-216 83-158 (447)
267 KOG0080 GTPase Rab18, small G 98.4 2.7E-07 5.8E-12 82.5 5.2 117 33-216 10-130 (209)
268 KOG0098 GTPase Rab2, small G p 98.4 9.6E-07 2.1E-11 81.2 8.9 120 33-219 5-127 (216)
269 TIGR00750 lao LAO/AO transport 98.4 5.3E-06 1.1E-10 85.7 15.7 101 134-257 125-235 (300)
270 cd01858 NGP_1 NGP-1. Autoanti 98.4 6.9E-07 1.5E-11 83.1 8.3 28 35-62 103-130 (157)
271 cd04178 Nucleostemin_like Nucl 98.4 8.1E-07 1.8E-11 83.8 8.1 29 34-62 117-145 (172)
272 PRK12740 elongation factor G; 98.4 6.8E-07 1.5E-11 102.6 8.6 69 135-218 59-127 (668)
273 PTZ00141 elongation factor 1- 98.4 5E-07 1.1E-11 98.1 7.0 66 134-215 83-157 (446)
274 KOG2655 Septin family protein 98.4 2.1E-06 4.6E-11 88.3 10.7 83 136-220 79-175 (366)
275 cd01855 YqeH YqeH. YqeH is an 98.4 1E-06 2.3E-11 84.6 8.0 25 35-59 128-152 (190)
276 PRK13768 GTPase; Provisional 98.4 2.7E-06 5.8E-11 85.6 11.2 76 136-219 97-178 (253)
277 KOG0394 Ras-related GTPase [Ge 98.4 9.8E-07 2.1E-11 81.0 7.0 120 32-217 7-132 (210)
278 cd01849 YlqF_related_GTPase Yl 98.3 7.6E-07 1.7E-11 82.6 6.4 32 33-64 99-130 (155)
279 TIGR01425 SRP54_euk signal rec 98.3 6.2E-06 1.3E-10 87.9 13.5 79 136-225 183-261 (429)
280 COG0532 InfB Translation initi 98.3 4.9E-06 1.1E-10 88.9 12.0 155 32-256 3-166 (509)
281 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.6E-06 3.5E-11 79.1 6.3 25 35-59 84-108 (141)
282 cd01851 GBP Guanylate-binding 98.2 3.1E-06 6.6E-11 83.5 8.3 33 33-65 6-39 (224)
283 COG5256 TEF1 Translation elong 98.2 5.9E-06 1.3E-10 85.5 10.1 69 134-217 83-159 (428)
284 KOG1547 Septin CDC10 and relat 98.2 9.6E-06 2.1E-10 77.6 10.4 79 137-217 105-198 (336)
285 KOG0070 GTP-binding ADP-ribosy 98.2 5.8E-06 1.3E-10 76.5 8.4 151 33-255 16-173 (181)
286 KOG1145 Mitochondrial translat 98.2 1.1E-05 2.3E-10 85.8 11.4 143 32-245 151-298 (683)
287 KOG0395 Ras-related GTPase [Ge 98.2 6.3E-06 1.4E-10 79.4 9.0 149 34-250 3-155 (196)
288 KOG3883 Ras family small GTPas 98.2 2E-05 4.4E-10 70.1 11.3 70 137-220 61-135 (198)
289 PRK11889 flhF flagellar biosyn 98.2 1.1E-05 2.4E-10 84.2 10.9 151 35-227 242-401 (436)
290 COG0480 FusA Translation elong 98.2 6.5E-06 1.4E-10 92.9 9.9 135 33-218 9-143 (697)
291 COG1161 Predicted GTPases [Gen 98.1 2.5E-06 5.4E-11 88.7 5.6 32 35-71 133-164 (322)
292 TIGR03596 GTPase_YlqF ribosome 98.1 6.9E-06 1.5E-10 83.8 8.7 30 33-62 117-146 (276)
293 KOG0087 GTPase Rab11/YPT3, sma 98.1 1.2E-05 2.6E-10 75.7 8.6 119 32-217 12-133 (222)
294 cd01856 YlqF YlqF. Proteins o 98.1 7.9E-06 1.7E-10 77.1 7.4 27 33-59 114-140 (171)
295 PRK09563 rbgA GTPase YlqF; Rev 98.1 1E-05 2.2E-10 83.0 8.4 26 34-59 121-146 (287)
296 PTZ00099 rab6; Provisional 98.1 7.7E-06 1.7E-10 77.6 6.9 116 136-265 29-147 (176)
297 PF03029 ATP_bind_1: Conserved 98.1 2.7E-06 5.9E-11 84.5 3.8 19 39-57 1-19 (238)
298 PF04670 Gtr1_RagA: Gtr1/RagA 98.0 2.2E-05 4.8E-10 77.3 9.6 120 36-219 1-127 (232)
299 TIGR00157 ribosome small subun 98.0 2E-05 4.3E-10 78.9 9.2 25 35-59 121-145 (245)
300 KOG1707 Predicted Ras related/ 98.0 2E-05 4.4E-10 84.5 9.4 120 34-221 9-133 (625)
301 PRK12289 GTPase RsgA; Reviewed 98.0 1E-05 2.2E-10 84.8 7.2 25 36-60 174-198 (352)
302 PRK12288 GTPase RsgA; Reviewed 98.0 1.5E-05 3.2E-10 83.6 8.2 24 36-59 207-230 (347)
303 cd03112 CobW_like The function 98.0 2.7E-05 5.9E-10 72.4 9.0 23 35-57 1-23 (158)
304 COG0012 Predicted GTPase, prob 98.0 1E-05 2.3E-10 83.2 6.7 106 35-183 3-108 (372)
305 PF00448 SRP54: SRP54-type pro 98.0 9.7E-06 2.1E-10 78.1 5.9 81 136-227 84-164 (196)
306 PRK14723 flhF flagellar biosyn 98.0 1.8E-05 3.9E-10 89.7 8.9 171 36-248 187-366 (767)
307 KOG0090 Signal recognition par 98.0 2.2E-05 4.8E-10 74.1 7.9 71 137-220 83-162 (238)
308 PRK12726 flagellar biosynthesi 98.0 0.0001 2.3E-09 76.9 13.6 152 34-227 206-366 (407)
309 KOG0079 GTP-binding protein H- 98.0 7.8E-06 1.7E-10 72.2 4.5 121 31-218 5-127 (198)
310 KOG0086 GTPase Rab4, small G p 98.0 2.2E-05 4.7E-10 69.7 7.3 122 31-218 6-129 (214)
311 PRK13796 GTPase YqeH; Provisio 98.0 7E-06 1.5E-10 86.9 5.1 24 35-58 161-184 (365)
312 TIGR03597 GTPase_YqeH ribosome 98.0 7.7E-06 1.7E-10 86.5 5.0 24 35-58 155-178 (360)
313 PRK06731 flhF flagellar biosyn 97.9 0.00018 4E-09 72.5 14.3 154 33-227 74-235 (270)
314 PRK14722 flhF flagellar biosyn 97.9 1.8E-05 3.8E-10 83.2 7.0 24 34-57 137-160 (374)
315 PF03193 DUF258: Protein of un 97.9 9.2E-06 2E-10 75.0 4.3 25 35-59 36-60 (161)
316 cd03114 ArgK-like The function 97.9 0.00012 2.5E-09 67.3 11.1 58 135-214 91-148 (148)
317 KOG0462 Elongation factor-type 97.9 5.1E-05 1.1E-09 80.8 9.4 134 33-218 59-192 (650)
318 KOG0076 GTP-binding ADP-ribosy 97.9 1.8E-05 3.9E-10 72.2 5.2 110 136-258 69-185 (197)
319 PRK10416 signal recognition pa 97.9 4.4E-05 9.4E-10 79.1 8.8 84 135-227 196-283 (318)
320 TIGR00092 GTP-binding protein 97.9 5.3E-05 1.1E-09 79.2 9.4 105 35-183 3-108 (368)
321 KOG1491 Predicted GTP-binding 97.9 1.2E-05 2.6E-10 80.9 4.1 104 33-183 19-125 (391)
322 PRK14974 cell division protein 97.9 2.5E-05 5.4E-10 81.3 6.6 81 136-227 223-303 (336)
323 KOG1486 GTP-binding protein DR 97.9 1.9E-05 4E-10 76.2 5.1 45 134-184 107-151 (364)
324 COG1217 TypA Predicted membran 97.8 4.3E-05 9.4E-10 79.8 7.8 133 33-219 4-136 (603)
325 PF03308 ArgK: ArgK protein; 97.8 6.2E-05 1.3E-09 74.1 8.4 25 33-57 28-52 (266)
326 KOG0468 U5 snRNP-specific prot 97.8 8.1E-05 1.7E-09 80.6 9.6 133 34-216 128-262 (971)
327 cd01859 MJ1464 MJ1464. This f 97.8 9.5E-05 2.1E-09 68.5 9.2 26 34-59 101-126 (156)
328 PRK12727 flagellar biosynthesi 97.8 7.6E-05 1.6E-09 81.0 9.1 24 34-57 350-373 (559)
329 PRK14721 flhF flagellar biosyn 97.8 8.6E-05 1.9E-09 79.3 8.8 153 34-227 191-350 (420)
330 PRK00098 GTPase RsgA; Reviewed 97.8 0.00012 2.6E-09 75.5 9.7 24 36-59 166-189 (298)
331 PRK05703 flhF flagellar biosyn 97.7 0.00033 7.1E-09 75.6 13.3 82 136-227 300-381 (424)
332 KOG4252 GTP-binding protein [S 97.7 1.3E-05 2.7E-10 73.2 1.9 67 138-219 71-140 (246)
333 PRK14845 translation initiatio 97.7 0.00015 3.3E-09 85.3 11.2 68 135-217 525-592 (1049)
334 KOG0097 GTPase Rab14, small G 97.7 0.00011 2.4E-09 64.2 7.4 121 34-220 11-133 (215)
335 KOG1532 GTPase XAB1, interacts 97.7 0.00025 5.3E-09 69.6 10.3 25 33-57 18-42 (366)
336 KOG0458 Elongation factor 1 al 97.7 1.9E-05 4.1E-10 84.8 2.9 101 133-248 252-370 (603)
337 KOG1424 Predicted GTP-binding 97.7 2.8E-05 6.1E-10 82.3 4.1 33 34-71 314-346 (562)
338 TIGR00064 ftsY signal recognit 97.7 0.00026 5.5E-09 71.9 10.9 83 135-227 154-241 (272)
339 COG1162 Predicted GTPases [Gen 97.7 9.4E-05 2E-09 74.6 7.1 22 36-57 166-187 (301)
340 KOG0081 GTPase Rab27, small G 97.7 2.1E-05 4.6E-10 70.3 1.9 97 137-248 68-169 (219)
341 PRK00771 signal recognition pa 97.6 0.0003 6.4E-09 75.9 10.8 80 137-227 177-256 (437)
342 cd01854 YjeQ_engC YjeQ/EngC. 97.6 0.00021 4.6E-09 73.3 9.3 25 35-59 162-186 (287)
343 PRK12723 flagellar biosynthesi 97.6 0.00073 1.6E-08 71.7 13.2 152 35-227 175-336 (388)
344 cd03115 SRP The signal recogni 97.6 0.00015 3.2E-09 68.5 7.1 79 135-224 82-160 (173)
345 PRK12724 flagellar biosynthesi 97.6 0.00019 4E-09 76.2 8.3 81 135-227 299-383 (432)
346 COG1703 ArgK Putative periplas 97.6 0.0018 3.9E-08 64.8 14.4 25 33-57 50-74 (323)
347 PRK10867 signal recognition pa 97.6 0.00044 9.5E-09 74.4 10.6 81 135-226 183-263 (433)
348 KOG0074 GTP-binding ADP-ribosy 97.5 0.00055 1.2E-08 60.3 9.0 115 34-218 17-134 (185)
349 TIGR00101 ureG urease accessor 97.5 0.00059 1.3E-08 66.0 10.4 96 135-256 91-192 (199)
350 COG4108 PrfC Peptide chain rel 97.5 0.00038 8.3E-09 72.5 9.1 134 35-218 13-148 (528)
351 COG0481 LepA Membrane GTPase L 97.5 0.00045 9.8E-09 72.6 9.2 170 33-256 8-182 (603)
352 TIGR00073 hypB hydrogenase acc 97.5 0.00064 1.4E-08 66.2 9.7 25 33-57 21-45 (207)
353 COG3640 CooC CO dehydrogenase 97.5 0.001 2.2E-08 64.3 10.5 85 137-246 135-222 (255)
354 KOG0780 Signal recognition par 97.4 0.00046 9.9E-09 70.9 8.4 79 134-223 182-260 (483)
355 COG0050 TufB GTPases - transla 97.4 0.00057 1.2E-08 67.7 8.7 130 36-219 14-144 (394)
356 COG3276 SelB Selenocysteine-sp 97.4 0.00073 1.6E-08 70.9 9.6 106 137-259 51-161 (447)
357 KOG2485 Conserved ATP/GTP bind 97.4 0.00019 4.2E-09 71.8 4.9 26 33-58 142-167 (335)
358 COG0541 Ffh Signal recognition 97.4 0.0053 1.1E-07 64.7 15.6 79 135-225 182-261 (451)
359 KOG0071 GTP-binding ADP-ribosy 97.4 0.0014 3.1E-08 57.7 9.6 124 33-227 16-144 (180)
360 TIGR03348 VI_IcmF type VI secr 97.4 0.001 2.2E-08 80.9 11.9 56 4-63 83-138 (1169)
361 TIGR00959 ffh signal recogniti 97.4 0.00079 1.7E-08 72.4 9.8 80 136-226 183-262 (428)
362 COG5192 BMS1 GTP-binding prote 97.4 0.00037 8.1E-09 74.2 7.0 70 134-221 111-181 (1077)
363 KOG1143 Predicted translation 97.4 0.00031 6.8E-09 71.4 6.2 146 36-219 169-319 (591)
364 COG1419 FlhF Flagellar GTP-bin 97.3 0.00083 1.8E-08 70.4 9.0 171 34-248 203-381 (407)
365 KOG0077 Vesicle coat complex C 97.3 0.0011 2.5E-08 60.2 8.6 118 31-219 17-137 (193)
366 KOG1144 Translation initiation 97.2 0.0016 3.4E-08 71.8 10.0 132 32-216 473-605 (1064)
367 KOG3859 Septins (P-loop GTPase 97.2 0.0012 2.7E-08 64.7 8.0 81 137-219 96-192 (406)
368 PRK06995 flhF flagellar biosyn 97.2 0.0011 2.3E-08 72.2 8.4 95 136-243 335-429 (484)
369 KOG0088 GTPase Rab21, small G 97.2 0.00069 1.5E-08 60.8 5.6 70 135-218 61-133 (218)
370 KOG0072 GTP-binding ADP-ribosy 97.1 0.003 6.5E-08 56.0 8.6 71 135-218 61-134 (182)
371 KOG2203 GTP-binding protein [G 97.1 0.63 1.4E-05 50.4 28.9 28 32-59 35-62 (772)
372 KOG0393 Ras-related small GTPa 97.1 0.00075 1.6E-08 64.2 4.9 118 35-218 5-124 (198)
373 KOG0461 Selenocysteine-specifi 97.0 0.0033 7.1E-08 63.6 9.4 65 136-220 70-139 (522)
374 COG5257 GCD11 Translation init 97.0 0.0018 3.8E-08 65.1 7.1 39 36-76 12-50 (415)
375 COG2895 CysN GTPases - Sulfate 96.9 0.004 8.7E-08 63.5 9.2 143 33-221 5-157 (431)
376 KOG2484 GTPase [General functi 96.7 0.0023 4.9E-08 66.2 5.7 32 33-64 251-282 (435)
377 KOG0467 Translation elongation 96.6 0.0046 1E-07 68.6 7.2 129 33-215 8-136 (887)
378 PRK11537 putative GTP-binding 96.6 0.0098 2.1E-07 61.8 9.4 25 33-57 3-27 (318)
379 KOG1487 GTP-binding protein DR 96.5 0.0019 4.2E-08 62.9 3.3 24 35-58 60-83 (358)
380 KOG0083 GTPase Rab26/Rab37, sm 96.5 0.00051 1.1E-08 59.8 -1.0 96 136-248 47-148 (192)
381 KOG1534 Putative transcription 96.3 0.011 2.3E-07 56.2 6.7 162 36-218 5-179 (273)
382 PRK01889 GTPase RsgA; Reviewed 96.3 0.0074 1.6E-07 63.8 6.5 23 36-58 197-219 (356)
383 cd01859 MJ1464 MJ1464. This f 96.2 0.0083 1.8E-07 55.4 5.7 92 162-257 2-93 (156)
384 cd01855 YqeH YqeH. YqeH is an 96.2 0.03 6.4E-07 53.6 9.5 94 160-257 22-122 (190)
385 KOG0464 Elongation factor G [T 96.2 0.015 3.3E-07 60.2 7.6 134 33-218 36-169 (753)
386 KOG2749 mRNA cleavage and poly 95.9 0.077 1.7E-06 54.4 11.1 40 33-78 102-141 (415)
387 COG0523 Putative GTPases (G3E 95.8 0.086 1.9E-06 54.7 11.5 141 34-220 1-162 (323)
388 TIGR02868 CydC thiol reductant 95.8 0.053 1.1E-06 60.8 10.7 22 36-57 363-384 (529)
389 COG1101 PhnK ABC-type uncharac 95.8 0.0085 1.8E-07 57.3 3.5 28 35-63 33-60 (263)
390 TIGR02475 CobW cobalamin biosy 95.7 0.033 7.2E-07 58.5 8.2 25 33-57 3-27 (341)
391 KOG2423 Nucleolar GTPase [Gene 95.7 0.0089 1.9E-07 61.7 3.5 23 37-59 310-332 (572)
392 cd01858 NGP_1 NGP-1. Autoanti 95.7 0.023 5E-07 52.6 6.0 52 166-218 2-54 (157)
393 COG1120 FepC ABC-type cobalami 95.6 0.069 1.5E-06 53.3 9.5 22 36-57 30-51 (258)
394 COG3840 ThiQ ABC-type thiamine 95.5 0.011 2.3E-07 55.2 3.2 29 35-64 26-54 (231)
395 COG1136 SalX ABC-type antimicr 95.5 0.012 2.5E-07 57.6 3.5 54 160-214 148-203 (226)
396 TIGR00157 ribosome small subun 95.5 0.0072 1.6E-07 60.5 2.1 90 163-253 27-116 (245)
397 PF13555 AAA_29: P-loop contai 95.4 0.015 3.2E-07 44.6 3.1 21 36-56 25-45 (62)
398 COG4988 CydD ABC-type transpor 95.4 0.11 2.3E-06 57.0 10.6 28 36-65 349-376 (559)
399 PF05879 RHD3: Root hair defec 95.4 7.6 0.00016 45.3 33.7 23 40-63 1-23 (742)
400 KOG1533 Predicted GTPase [Gene 95.3 0.041 8.9E-07 53.2 6.5 20 37-56 5-24 (290)
401 COG0552 FtsY Signal recognitio 95.3 0.11 2.4E-06 53.3 9.7 81 136-225 222-306 (340)
402 KOG0460 Mitochondrial translat 95.2 0.071 1.5E-06 54.3 7.9 133 33-219 51-186 (449)
403 KOG0463 GTP-binding protein GP 95.2 0.04 8.7E-07 56.5 6.2 29 36-65 135-163 (641)
404 KOG3886 GTP-binding protein [S 95.1 0.023 5.1E-07 54.7 4.1 50 170-220 79-133 (295)
405 PRK12289 GTPase RsgA; Reviewed 95.1 0.024 5.1E-07 59.7 4.5 88 163-252 80-167 (352)
406 cd00071 GMPK Guanosine monopho 95.1 0.02 4.3E-07 51.8 3.5 21 37-57 2-22 (137)
407 PRK13695 putative NTPase; Prov 95.0 0.075 1.6E-06 50.1 7.2 22 36-57 2-23 (174)
408 PF00005 ABC_tran: ABC transpo 94.9 0.019 4.1E-07 51.6 2.9 24 35-58 12-35 (137)
409 TIGR03499 FlhF flagellar biosy 94.9 0.011 2.3E-07 60.5 1.3 23 35-57 195-217 (282)
410 PF13521 AAA_28: AAA domain; P 94.9 0.014 3.1E-07 54.3 2.0 22 36-57 1-22 (163)
411 PF06858 NOG1: Nucleolar GTP-b 94.9 0.056 1.2E-06 40.5 4.6 52 163-214 3-58 (58)
412 PF03205 MobB: Molybdopterin g 94.8 0.022 4.8E-07 51.7 2.9 23 35-57 1-23 (140)
413 cd01130 VirB11-like_ATPase Typ 94.7 0.024 5.2E-07 54.1 3.1 23 35-57 26-48 (186)
414 PRK01889 GTPase RsgA; Reviewed 94.7 0.03 6.4E-07 59.3 4.0 77 170-249 110-186 (356)
415 KOG4181 Uncharacterized conser 94.7 0.2 4.2E-06 51.2 9.4 26 33-58 187-212 (491)
416 COG4604 CeuD ABC-type enteroch 94.6 0.13 2.8E-06 48.8 7.5 34 36-71 29-62 (252)
417 COG4107 PhnK ABC-type phosphon 94.6 0.028 6.1E-07 51.9 3.1 31 36-68 34-64 (258)
418 cd01983 Fer4_NifH The Fer4_Nif 94.6 0.17 3.7E-06 41.7 7.7 21 37-57 2-22 (99)
419 TIGR03263 guanyl_kin guanylate 94.6 0.034 7.4E-07 52.5 3.7 22 36-57 3-24 (180)
420 COG1116 TauB ABC-type nitrate/ 94.5 0.029 6.3E-07 55.1 3.1 28 35-63 30-57 (248)
421 COG4559 ABC-type hemin transpo 94.5 0.032 7E-07 53.4 3.2 31 36-68 29-59 (259)
422 PRK00300 gmk guanylate kinase; 94.4 0.033 7.2E-07 53.9 3.4 37 35-71 6-43 (205)
423 COG0194 Gmk Guanylate kinase [ 94.4 0.03 6.4E-07 52.6 2.8 36 36-71 6-41 (191)
424 TIGR01360 aden_kin_iso1 adenyl 94.4 0.032 7E-07 53.0 3.1 26 33-58 2-30 (188)
425 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.3 0.038 8.3E-07 50.4 3.2 23 36-58 28-50 (144)
426 COG3523 IcmF Type VI protein s 94.3 0.16 3.5E-06 60.7 9.1 81 137-218 175-271 (1188)
427 COG5258 GTPBP1 GTPase [General 94.2 0.05 1.1E-06 56.2 4.2 66 138-219 203-271 (527)
428 cd03225 ABC_cobalt_CbiO_domain 94.2 0.039 8.5E-07 53.7 3.4 29 36-66 29-57 (211)
429 PRK11174 cysteine/glutathione 94.2 0.14 3E-06 58.2 8.3 28 36-66 378-405 (588)
430 cd03261 ABC_Org_Solvent_Resist 94.2 0.04 8.8E-07 54.6 3.5 22 36-57 28-49 (235)
431 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.1 0.04 8.6E-07 53.9 3.3 29 36-66 32-60 (218)
432 cd03280 ABC_MutS2 MutS2 homolo 94.1 0.42 9E-06 46.1 10.4 20 36-55 30-49 (200)
433 cd03264 ABC_drug_resistance_li 94.1 0.041 9E-07 53.5 3.3 30 35-66 26-55 (211)
434 PRK00098 GTPase RsgA; Reviewed 94.1 0.052 1.1E-06 56.0 4.2 81 170-251 78-158 (298)
435 TIGR01166 cbiO cobalt transpor 94.1 0.043 9.2E-07 52.5 3.3 23 36-58 20-42 (190)
436 PRK13851 type IV secretion sys 94.1 0.038 8.3E-07 57.9 3.2 32 35-68 163-194 (344)
437 COG0410 LivF ABC-type branched 94.1 0.044 9.6E-07 53.2 3.3 22 36-57 31-52 (237)
438 cd01849 YlqF_related_GTPase Yl 94.1 0.094 2E-06 48.3 5.4 43 174-218 1-44 (155)
439 smart00010 small_GTPase Small 94.0 0.18 3.9E-06 43.9 7.0 24 36-59 2-25 (124)
440 cd03265 ABC_DrrA DrrA is the A 94.0 0.045 9.7E-07 53.7 3.3 22 36-57 28-49 (220)
441 PRK14737 gmk guanylate kinase; 94.0 0.056 1.2E-06 51.6 3.9 37 35-71 5-42 (186)
442 TIGR02673 FtsE cell division A 93.9 0.047 1E-06 53.2 3.4 23 36-58 30-52 (214)
443 cd03224 ABC_TM1139_LivF_branch 93.9 0.047 1E-06 53.5 3.4 23 36-58 28-50 (222)
444 cd03222 ABC_RNaseL_inhibitor T 93.9 0.048 1.1E-06 51.6 3.3 24 35-58 26-49 (177)
445 TIGR03596 GTPase_YlqF ribosome 93.9 0.15 3.2E-06 52.0 7.0 52 163-218 12-63 (276)
446 cd03226 ABC_cobalt_CbiO_domain 93.9 0.051 1.1E-06 52.7 3.5 29 36-66 28-56 (205)
447 TIGR00960 3a0501s02 Type II (G 93.9 0.048 1E-06 53.3 3.3 23 35-57 30-52 (216)
448 cd03218 ABC_YhbG The ABC trans 93.9 0.052 1.1E-06 53.7 3.6 23 36-58 28-50 (232)
449 cd03263 ABC_subfamily_A The AB 93.9 0.049 1.1E-06 53.4 3.4 23 36-58 30-52 (220)
450 cd03259 ABC_Carb_Solutes_like 93.9 0.051 1.1E-06 52.9 3.5 22 36-57 28-49 (213)
451 COG1132 MdlB ABC-type multidru 93.9 0.43 9.3E-06 53.9 11.4 22 36-57 357-378 (567)
452 cd03215 ABC_Carb_Monos_II This 93.9 0.055 1.2E-06 51.4 3.6 24 35-58 27-50 (182)
453 cd03269 ABC_putative_ATPase Th 93.8 0.05 1.1E-06 52.9 3.3 22 36-57 28-49 (210)
454 cd03229 ABC_Class3 This class 93.8 0.055 1.2E-06 51.2 3.5 22 36-57 28-49 (178)
455 PRK13541 cytochrome c biogenes 93.8 0.055 1.2E-06 52.0 3.5 23 36-58 28-50 (195)
456 cd03258 ABC_MetN_methionine_tr 93.8 0.056 1.2E-06 53.5 3.6 29 36-66 33-61 (233)
457 PRK11629 lolD lipoprotein tran 93.7 0.051 1.1E-06 53.8 3.3 22 36-57 37-58 (233)
458 PRK13651 cobalt transporter AT 93.7 0.054 1.2E-06 56.1 3.5 30 36-67 35-64 (305)
459 cd03292 ABC_FtsE_transporter F 93.7 0.053 1.2E-06 52.8 3.3 22 36-57 29-50 (214)
460 TIGR02315 ABC_phnC phosphonate 93.7 0.053 1.1E-06 54.0 3.3 22 36-57 30-51 (243)
461 cd03293 ABC_NrtD_SsuB_transpor 93.7 0.054 1.2E-06 53.1 3.3 23 36-58 32-54 (220)
462 cd03262 ABC_HisP_GlnQ_permease 93.7 0.056 1.2E-06 52.6 3.4 29 36-66 28-56 (213)
463 COG1121 ZnuC ABC-type Mn/Zn tr 93.7 0.055 1.2E-06 53.8 3.3 31 36-68 32-62 (254)
464 cd03266 ABC_NatA_sodium_export 93.7 0.055 1.2E-06 52.9 3.3 22 36-57 33-54 (218)
465 TIGR03796 NHPM_micro_ABC1 NHPM 93.7 0.46 9.9E-06 55.3 11.5 23 36-58 507-529 (710)
466 KOG0465 Mitochondrial elongati 93.7 0.32 6.8E-06 53.4 9.1 69 135-218 103-171 (721)
467 PRK13540 cytochrome c biogenes 93.7 0.06 1.3E-06 52.0 3.5 25 34-58 27-51 (200)
468 PRK13543 cytochrome c biogenes 93.6 0.059 1.3E-06 52.7 3.5 30 36-67 39-68 (214)
469 cd03254 ABCC_Glucan_exporter_l 93.6 0.06 1.3E-06 53.1 3.6 29 36-66 31-59 (229)
470 cd00267 ABC_ATPase ABC (ATP-bi 93.6 0.065 1.4E-06 49.5 3.5 32 35-68 26-57 (157)
471 TIGR03608 L_ocin_972_ABC putat 93.6 0.061 1.3E-06 52.1 3.5 23 36-58 26-48 (206)
472 cd03216 ABC_Carb_Monos_I This 93.6 0.062 1.3E-06 50.1 3.4 24 35-58 27-50 (163)
473 cd02019 NK Nucleoside/nucleoti 93.6 0.062 1.3E-06 42.2 2.9 21 37-57 2-22 (69)
474 cd03231 ABC_CcmA_heme_exporter 93.6 0.065 1.4E-06 51.8 3.6 30 35-66 27-56 (201)
475 cd03219 ABC_Mj1267_LivG_branch 93.6 0.06 1.3E-06 53.4 3.5 29 36-66 28-56 (236)
476 cd03369 ABCC_NFT1 Domain 2 of 93.6 0.062 1.3E-06 52.2 3.5 30 36-67 36-65 (207)
477 PF13207 AAA_17: AAA domain; P 93.6 0.056 1.2E-06 47.3 2.9 22 36-57 1-22 (121)
478 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.5 0.061 1.3E-06 53.4 3.4 30 36-67 31-60 (238)
479 PRK15177 Vi polysaccharide exp 93.5 0.063 1.4E-06 52.4 3.5 30 36-67 15-44 (213)
480 cd03230 ABC_DR_subfamily_A Thi 93.5 0.067 1.5E-06 50.3 3.5 23 36-58 28-50 (173)
481 TIGR03797 NHPM_micro_ABC2 NHPM 93.5 0.51 1.1E-05 54.7 11.5 23 36-58 481-503 (686)
482 KOG1707 Predicted Ras related/ 93.5 0.27 5.8E-06 53.7 8.3 27 33-59 424-450 (625)
483 cd03256 ABC_PhnC_transporter A 93.5 0.06 1.3E-06 53.5 3.4 22 36-57 29-50 (241)
484 cd03268 ABC_BcrA_bacitracin_re 93.5 0.062 1.3E-06 52.2 3.3 22 36-57 28-49 (208)
485 cd03235 ABC_Metallic_Cations A 93.5 0.064 1.4E-06 52.3 3.4 23 36-58 27-49 (213)
486 cd03236 ABC_RNaseL_inhibitor_d 93.5 0.068 1.5E-06 53.8 3.6 32 35-68 27-58 (255)
487 cd01857 HSR1_MMR1 HSR1/MMR1. 93.5 0.095 2.1E-06 47.5 4.3 53 165-218 4-57 (141)
488 PRK14250 phosphate ABC transpo 93.4 0.068 1.5E-06 53.3 3.6 30 36-67 31-60 (241)
489 cd03301 ABC_MalK_N The N-termi 93.4 0.064 1.4E-06 52.2 3.3 22 36-57 28-49 (213)
490 cd03223 ABCD_peroxisomal_ALDP 93.4 0.075 1.6E-06 49.7 3.6 22 36-57 29-50 (166)
491 cd03257 ABC_NikE_OppD_transpor 93.4 0.066 1.4E-06 52.7 3.4 29 36-66 33-61 (228)
492 COG4962 CpaF Flp pilus assembl 93.4 0.12 2.6E-06 53.2 5.3 23 35-57 174-196 (355)
493 PRK10895 lipopolysaccharide AB 93.4 0.07 1.5E-06 53.1 3.6 22 36-57 31-52 (241)
494 TIGR02211 LolD_lipo_ex lipopro 93.4 0.071 1.5E-06 52.2 3.6 23 36-58 33-55 (221)
495 PRK11124 artP arginine transpo 93.4 0.069 1.5E-06 53.2 3.5 24 35-58 29-52 (242)
496 cd01856 YlqF YlqF. Proteins o 93.4 0.16 3.4E-06 47.7 5.8 53 162-218 9-61 (171)
497 cd03253 ABCC_ATM1_transporter 93.4 0.07 1.5E-06 52.9 3.5 29 36-66 29-57 (236)
498 cd03232 ABC_PDR_domain2 The pl 93.3 0.073 1.6E-06 51.1 3.5 23 36-58 35-57 (192)
499 PRK11248 tauB taurine transpor 93.3 0.069 1.5E-06 53.7 3.4 23 36-58 29-51 (255)
500 cd03246 ABCC_Protease_Secretio 93.3 0.075 1.6E-06 50.0 3.4 23 36-58 30-52 (173)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=4.5e-98 Score=823.56 Aligned_cols=598 Identities=41% Similarity=0.598 Sum_probs=547.6
Q ss_pred CcchHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecC
Q 007263 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (610)
Q Consensus 1 ~~~l~~~~~~lq~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~ 80 (610)
|+.++|++|++||+|..+|.. .++.||+|+|||+||+||||++|+++|++|+|||+|+|||+|++++|.+..
T Consensus 4 ~~~li~~vn~lqd~~~~l~~~--------~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~ 75 (657)
T KOG0446|consen 4 MRLLIPLSNPLQDKLEILGSS--------SFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVA 75 (657)
T ss_pred hhhccccchHHHHHHHHhcCC--------CcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeeccccc
Confidence 789999999999999999932 346899999999999999999999999999999999999999999999998
Q ss_pred CCCccceeec-cCCCcccCChHHHHHHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchH
Q 007263 81 EGSREYAEFL-HIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIV 159 (610)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~ 159 (610)
.+..+|++|. |.+...++||.+++++|..+++++.|.++++|+.+|.+++++|+++++|+||+||+++++.++||+++.
T Consensus 76 ~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~ 155 (657)
T KOG0446|consen 76 GGDEEEASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIE 155 (657)
T ss_pred CCcccchhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHH
Confidence 8778999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeE
Q 007263 160 QDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIG 239 (610)
Q Consensus 160 ~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~ 239 (610)
.++++|+..|++.+++|||+|.++|.|+++++++++++++||.|.|||||+||+|+++.|+++.+++.|..+++++||++
T Consensus 156 ~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v~ 235 (657)
T KOG0446|consen 156 EEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYVG 235 (657)
T ss_pred HHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCccccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCChhhhhccccHHHHHHHHHhHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Q 007263 240 VVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSR 319 (610)
Q Consensus 240 v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~el~~ 319 (610)
|+||++++++...+..++...|..||.++|.|+.+.+++|+++|++.|...|..||++++|.+...|+..+.+.++++.+
T Consensus 236 vvnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~~ 315 (657)
T KOG0446|consen 236 VVNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELNR 315 (657)
T ss_pred eeccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHhhcCCC--------CCCchHHHHHhhhHHHHHhhhhhhhccchHHHHHHHH
Q 007263 320 LGKPIAADAGGKLYTIMEICRLFDQIYKEHLDGVR--------PGGDKIYYVFDNQLPAALKRLQFDKQLSMENIRKLIT 391 (610)
Q Consensus 320 l~~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~--------~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~i~~~i~ 391 (610)
+|. ..+.......++.+++.|+..+...+.|.. .||+|++++|++.|+..+.++++.+.+...+|++++.
T Consensus 316 ~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~ 393 (657)
T KOG0446|consen 316 IGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVS 393 (657)
T ss_pred hcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHH
Confidence 996 222233344577788888888888888862 4789999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCchHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhccCccCcchhHHHHHHHHHHHHHHHHHHHH
Q 007263 392 EADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDT 471 (610)
Q Consensus 392 ~~~g~~p~~~~pe~af~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~~~~~l~~~~~~ 471 (610)
|++|++|++|.|+.+|+.++++||+.+++|+++||+.|++++.+++++++..+ ++.|||.|+.++..++.+++.++.++
T Consensus 394 ~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~-~l~rfp~l~~~~~~~~~~~~~~~~~~ 472 (657)
T KOG0446|consen 394 EASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRAT-ELKRFPVLYSELVEIASSLIAEGLDE 472 (657)
T ss_pred hccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999998753 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccch---hhhccCc---hhhcc----------------CCCCCCC-------C-------------
Q 007263 472 SKKATLQLVDMECSYLTV---DFFRKLP---QDVDK----------------GGNPTHS-------I------------- 509 (610)
Q Consensus 472 a~~~i~~li~~E~~yi~~---d~~~~~~---~~~~~----------------~~~~~~~-------~------------- 509 (610)
++++|.++|+||.+|+|| ||++... +.... .+.+... .
T Consensus 473 t~~~v~~~i~~e~~yinT~h~df~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (657)
T KOG0446|consen 473 TKKAVKNLIDLEQSYLNTDHPDFRSLTDSALSSVTSPSIAAMKLISAQLLKEELGECNSALKAIKNAVGSIRLDPSDIVL 552 (657)
T ss_pred HHHHHHHHHHHHHHHhcCcChhhhhhHHHHHHHhhcccccccccccccccccccccccchhhhhcchhhhhhhcccchhh
Confidence 999999999999999988 4554321 11110 0000000 0
Q ss_pred -----CCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhcCCChHHHH
Q 007263 510 -----FDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVME 584 (610)
Q Consensus 510 -----~~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~l~~~L~~~~~~~~~~ll~E~~~i~~ 584 (610)
.......+.+.|..++.+||+||+++++|+|||+|||+||+.+++.|+.+|++.||+. .+.+++||+|+|.++.
T Consensus 553 ~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~~-~~~~~~ll~E~~~i~~ 631 (657)
T KOG0446|consen 553 SRALVLKKRECKETEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYAG-DEQLESLLKEDPRIKR 631 (657)
T ss_pred hhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHccCHHHHH
Confidence 0111123568899999999999999999999999999999999999999999999992 3459999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCC
Q 007263 585 RRSALAKRLELYRSAQSEIDAVAWSK 610 (610)
Q Consensus 585 kR~~l~~~~~~L~~A~~~l~~~~~~~ 610 (610)
+|+.+++++++|++|+.++..+.|++
T Consensus 632 ~R~~~~~~l~~L~~a~~ii~~~~~~~ 657 (657)
T KOG0446|consen 632 RRELQQKRLLALQKALSILATVAQAK 657 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999998864
No 2
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=5.6e-46 Score=381.81 Aligned_cols=269 Identities=33% Similarity=0.556 Sum_probs=242.0
Q ss_pred HHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHHHHHhHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhCHHH
Q 007263 223 ADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGI 302 (610)
Q Consensus 223 ~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l 302 (610)
.++++|+.++|++||++|+|||++|++...++.+++..|..||.++|+|+..++++|+++|+.+|+++|.+||+++||.+
T Consensus 2 ~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l 81 (295)
T PF01031_consen 2 MDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSL 81 (295)
T ss_dssp HHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHH
Confidence 67899999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHHHHHHhhcCCCC---------CCchHHHHHhhhHHHHHh
Q 007263 303 QSLISKTVLELENELSRLGKPIAADAGGKLYTIMEICRLFDQIYKEHLDGVRP---------GGDKIYYVFDNQLPAALK 373 (610)
Q Consensus 303 ~~~i~~~l~~~~~el~~l~~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~~---------~~~~i~~~f~~~~~~~~~ 373 (610)
+.+|+..+.+++.+|..||++++.+..++..+|++++++|++.+.++++|.+. ||++|.++|++.|...+.
T Consensus 82 ~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~ 161 (295)
T PF01031_consen 82 KSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLE 161 (295)
T ss_dssp HHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhh
Confidence 99999999999999999999988667778889999999999999999999986 479999999999999999
Q ss_pred hhhhhhccchHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhccCccCcchhHH
Q 007263 374 RLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPAL 453 (610)
Q Consensus 374 ~~~~~~~~~~~~i~~~i~~~~g~~p~~~~pe~af~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L 453 (610)
+.++...+++++|+++|++++|+++++|+|+.+|+.||+++|++|++||.+|++.|++++.+++.+++. .+|.+||+|
T Consensus 162 ~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~--~~~~~fp~L 239 (295)
T PF01031_consen 162 KIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLE--KEFERFPNL 239 (295)
T ss_dssp HTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHTTSHHH
T ss_pred hhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc--hhcCCchHH
Confidence 888888889999999999999999999999999999999999999999999999999999999999886 499999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccch---hhhc
Q 007263 454 RAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTV---DFFR 493 (610)
Q Consensus 454 ~~~i~~~~~~~l~~~~~~a~~~i~~li~~E~~yi~~---d~~~ 493 (610)
++++.+++.++++++.++|+++|+++|+||++|+|| +|..
T Consensus 240 ~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T~~~~f~~ 282 (295)
T PF01031_consen 240 KEAIKEAVQQLLEECREPAKEMIENLIDMELSYINTQHPDFLG 282 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSTT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHH
Confidence 999999999999999999999999999999999998 4554
No 3
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=7.2e-46 Score=363.92 Aligned_cols=239 Identities=65% Similarity=0.981 Sum_probs=223.1
Q ss_pred CcchHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecC
Q 007263 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (610)
Q Consensus 1 ~~~l~~~~~~lq~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~ 80 (610)
||.|++++|+|+++++.+|... .+++|+|+|||+||+||||+||+|+|..++|++.|.|||||+++++++.
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~--------~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~- 71 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEK--------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS- 71 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCC--------CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC-
Confidence 8999999999999999999532 2589999999999999999999999999999999999999999999874
Q ss_pred CCCccceeeccCCCcccCChHHHHHHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHH
Q 007263 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (610)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~ 160 (610)
..+|+++.+.+++.+.+++++.+.|.++++.+.|.+.+||+++|.++|++|++++++||||||+...+..+|+.++..
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~ 149 (240)
T smart00053 72 --STEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEE 149 (240)
T ss_pred --CCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHH
Confidence 457888888888899999999999999999999999999999999999999999999999999988777777788899
Q ss_pred HHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEe
Q 007263 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240 (610)
Q Consensus 161 ~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 240 (610)
.+++++..|+++++.|||+|.+++.|+.+++++++++.+++.+.||++|+||+|..++++++.++++|+.+++++||++|
T Consensus 150 ~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~v 229 (240)
T smart00053 150 QIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGV 229 (240)
T ss_pred HHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEEE
Confidence 99999999999999899999999999999999999999999999999999999999999899999999999999999999
Q ss_pred eeCChhhhhc
Q 007263 241 VNRSQADINK 250 (610)
Q Consensus 241 ~~~s~~~~~~ 250 (610)
+|||++|++.
T Consensus 230 ~nr~~~d~~~ 239 (240)
T smart00053 230 VNRSQKDIEG 239 (240)
T ss_pred ECCChHHhhc
Confidence 9999998764
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=100.00 E-value=2.2e-31 Score=273.30 Aligned_cols=281 Identities=30% Similarity=0.475 Sum_probs=226.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeccCC----CcccCChHHHHH
Q 007263 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIP----RKRFTDFAAVRK 105 (610)
Q Consensus 31 ~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~ 105 (610)
...||+|||||+||+||+|+|+.+....+||||+| +.||-|..+.|..+|. ..+.|.+.. -.+..|+.+++.
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPy---HVAqFrDSsREfDLTKE~DLq~LR~ 381 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPH---HVALFKDSSREFDLTKEEDLAALRH 381 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcc---hhhhhccccccccccchhHHHHHHH
Confidence 36899999999999999999999999999999999 7999999888765433 334444333 245568899999
Q ss_pred HHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC
Q 007263 106 EIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ 185 (610)
Q Consensus 106 ~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~ 185 (610)
+++-.+......++.+|+..|.+.+.+|+++.+.|||+||++.....+.-.+..+.|-.|.+.|+++|++||||+...+.
T Consensus 382 e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV 461 (980)
T KOG0447|consen 382 EIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 461 (980)
T ss_pred HHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc
Confidence 99888877767788999999999999999999999999999998887777788899999999999999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCCceEEEeecccCCCCC----CcHHHHHcCcccccC-CCeeEeeeCChhhhhccccHHHHHHH
Q 007263 186 DLATSDAIKISREVDPTGERTFGVLTKIDLMDKG----TDAADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIAARRR 260 (610)
Q Consensus 186 d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~----~~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (610)
|...+..-.+....||.|.|||+|+||+|+.... +.+..++.|+..|.+ +|||+|+.-.+. ..-++.+-+..
T Consensus 462 DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGn---ssdSIdaIR~Y 538 (980)
T KOG0447|consen 462 DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGN---SSESIEAIREY 538 (980)
T ss_pred chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCC---cchhHHHHHHH
Confidence 9888888889999999999999999999997542 246789999988876 799999853221 22245566788
Q ss_pred HHhHhccCCCCchh---hhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 007263 261 EREYFSTTPEYKHL---AQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENEL 317 (610)
Q Consensus 261 e~~~f~~~~~~~~~---~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~el 317 (610)
|+.||.++..+++- ++.+.+.+|.-.++.-++..+++++-.-.......--.++.|.
T Consensus 539 EE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDaFkAtrFNLEtEW 598 (980)
T KOG0447|consen 539 EEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADSFKATRFNLETEW 598 (980)
T ss_pred HHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999987655542 4677888888888998888888776554444443333333433
No 5
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.91 E-value=5.3e-24 Score=178.05 Aligned_cols=89 Identities=42% Similarity=0.590 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhcCCChHHHHHHHHHHHHHHH
Q 007263 516 SYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLEL 595 (610)
Q Consensus 516 ~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~l~~~L~~~~~~~~~~ll~E~~~i~~kR~~l~~~~~~ 595 (610)
.++++|+.++.|||+||+|+++|+|||+||||||+.+++.||.+|++.||+++. +++||+|||+|++||+.|++++++
T Consensus 4 ~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~~~--~~~LL~E~~~i~~kR~~~~~~l~~ 81 (92)
T smart00302 4 SELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEEL--LDELLEEDPEIASKRKELKKRLEL 81 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCccc--HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999864 999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 007263 596 YRSAQSEIDAV 606 (610)
Q Consensus 596 L~~A~~~l~~~ 606 (610)
|++|+++|++|
T Consensus 82 L~~A~~~l~~v 92 (92)
T smart00302 82 LKKARQIIAAV 92 (92)
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.90 E-value=2.6e-25 Score=218.31 Aligned_cols=238 Identities=18% Similarity=0.314 Sum_probs=180.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
....|++||.||+|||||+|+|+|..+ .++|+.|-+.+ .
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki-----sIvS~k~QTTR------------------------------------~ 43 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI-----SIVSPKPQTTR------------------------------------N 43 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce-----EeecCCcchhh------------------------------------h
Confidence 568999999999999999999999999 99999993333 3
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
++.| |...+..+++||||||++.... .+.+.+.+.+++.++.+|+|+|+|++.. .+...+
T Consensus 44 ~I~G-------------I~t~~~~QiIfvDTPGih~pk~-----~l~~~m~~~a~~sl~dvDlilfvvd~~~-~~~~~d- 103 (298)
T COG1159 44 RIRG-------------IVTTDNAQIIFVDTPGIHKPKH-----ALGELMNKAARSALKDVDLILFVVDADE-GWGPGD- 103 (298)
T ss_pred heeE-------------EEEcCCceEEEEeCCCCCCcch-----HHHHHHHHHHHHHhccCcEEEEEEeccc-cCCccH-
Confidence 4445 5666678999999999998633 3778888889999999999999987654 233322
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCCh---hhhhccccHHHHHHHHHhHhccCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQ---ADINKNVDMIAARRREREYFSTTP 269 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~---~~~~~~~~~~~~~~~e~~~f~~~~ 269 (610)
..++..+.....|.++++||+|...+......+.. ......+|..+++.|+ .+++.+...+....+|.+||+..+
T Consensus 104 ~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~--~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d 181 (298)
T COG1159 104 EFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIA--FLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPED 181 (298)
T ss_pred HHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHH--HHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChh
Confidence 23444454456899999999999987764444433 2333345555666555 667777788888889999999888
Q ss_pred CCchhhhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHH
Q 007263 270 EYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYTIM 336 (610)
Q Consensus 270 ~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~el~~l~~~~~~~~~~~~~~l~ 336 (610)
.+++.++++ -..+.++|.+...++++||+......+++.+.+..+..+...+.+++++++.+++
T Consensus 182 ~itD~~~rf---~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~Ver~sQK~IiI 245 (298)
T COG1159 182 QITDRPERF---LAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIYVERESQKGIII 245 (298)
T ss_pred hccCChHHH---HHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEEEecCCccceEE
Confidence 888876655 3458999999999999999999887777666567777888878888877765543
No 7
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.88 E-value=5.3e-22 Score=187.05 Aligned_cols=167 Identities=35% Similarity=0.509 Sum_probs=132.9
Q ss_pred EEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcc-ceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 37 IAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSRE-YAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 37 IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
|+|+|.+|||||||||+|+|.+++|++.++||++|+.++....+..... +..........+.++.++...+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7999999999999999999999999999999999999998766543211 111112225677899999999988877777
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l 195 (610)
+....++...+.+....+...+++||||||+......+ .+++.+|+..+|++|+|++ ++..+...+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~---------~~~~~~~~~~~d~vi~V~~-~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH---------TEITEEYLPKADVVIFVVD-ANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT---------SHHHHHHHSTTEEEEEEEE-TTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhh---------HHHHHHhhccCCEEEEEec-cCcccchHHHHHH
Confidence 66777888888888999999999999999997743332 3889999999998888775 4557777788889
Q ss_pred HHHhCCCCCceEEEeecc
Q 007263 196 SREVDPTGERTFGVLTKI 213 (610)
Q Consensus 196 ~~~~~~~~~rti~VltK~ 213 (610)
.+..++.+.++|+|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 999999999999999995
No 8
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.87 E-value=8.6e-22 Score=165.37 Aligned_cols=89 Identities=30% Similarity=0.469 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhcCCChHHHHHHHHHHHHHHH
Q 007263 516 SYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLEL 595 (610)
Q Consensus 516 ~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~l~~~L~~~~~~~~~~ll~E~~~i~~kR~~l~~~~~~ 595 (610)
..+++|+++++|||+||+|||+|+|||+|+||||+++.+.|+.+|+..|+..+. +++||+|||+|+++|+.|++++++
T Consensus 4 ~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~~--~~~Ll~Ed~~i~~kR~~l~~~~~~ 81 (92)
T PF02212_consen 4 REVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEED--LEELLQEDPEIAEKREELKKKLER 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG--CCCCT--GHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchHH--HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999998875 999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 007263 596 YRSAQSEIDAV 606 (610)
Q Consensus 596 L~~A~~~l~~~ 606 (610)
|++|+++|++|
T Consensus 82 L~~A~~~L~~~ 92 (92)
T PF02212_consen 82 LKKAQQILSEV 92 (92)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 99999999876
No 9
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.81 E-value=1e-19 Score=184.96 Aligned_cols=235 Identities=14% Similarity=0.174 Sum_probs=155.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
+.|+|+|.+|+|||||+|+|+|..+ ..++..|.+.+ ..+
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~-----~~vs~~~~TTr------------------------------------~~i 39 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKI-----SITSPKAQTTR------------------------------------NRI 39 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcE-----eecCCCCCccc------------------------------------CcE
Confidence 4799999999999999999999876 44444441111 000
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~ 194 (610)
.| +...+..++.|+||||+.... ..+...+.+.+..++..+|++++++++..... .+ ..
T Consensus 40 ~~-------------i~~~~~~qii~vDTPG~~~~~-----~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~--~~-~~ 98 (270)
T TIGR00436 40 SG-------------IHTTGASQIIFIDTPGFHEKK-----HSLNRLMMKEARSAIGGVDLILFVVDSDQWNG--DG-EF 98 (270)
T ss_pred EE-------------EEEcCCcEEEEEECcCCCCCc-----chHHHHHHHHHHHHHhhCCEEEEEEECCCCCc--hH-HH
Confidence 01 222233468999999997642 12444555567888999999999998765322 21 33
Q ss_pred HHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccC-CCeeEeeeCChhhhhccccHHHHHHHHHhHhccCCCCch
Q 007263 195 ISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKH 273 (610)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~ 273 (610)
+...+...+.|+++|+||+|+..+. ...+.+........ ..++.+++....+++.+.+.+....++.+|++..+..++
T Consensus 99 i~~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~ 177 (270)
T TIGR00436 99 VLTKLQNLKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTD 177 (270)
T ss_pred HHHHHHhcCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCC
Confidence 4444455678999999999997432 22222211111111 257888888888888888888888888888777766666
Q ss_pred hhhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHH
Q 007263 274 LAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYTI 335 (610)
Q Consensus 274 ~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~el~~l~~~~~~~~~~~~~~l 335 (610)
.+.++ ...+.+++.++.++++++||......+.+.+.+.....+...+.+++++++.++
T Consensus 178 ~~~~~---~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~v~~~s~k~ii 236 (270)
T TIGR00436 178 QPDRF---KISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVERESQKKII 236 (270)
T ss_pred CCHHH---HHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEEECcCCceeEE
Confidence 44332 456899999999999999999988777765533223345555566666665544
No 10
>PRK00089 era GTPase Era; Reviewed
Probab=99.78 E-value=8.8e-19 Score=180.38 Aligned_cols=237 Identities=18% Similarity=0.271 Sum_probs=154.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
....|+|+|.+|||||||+|+|+|.++ ..++..|...+ .
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~-----~~vs~~~~tt~------------------------------------~ 42 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKI-----SIVSPKPQTTR------------------------------------H 42 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCce-----eecCCCCCccc------------------------------------c
Confidence 467899999999999999999999886 44444441111 0
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
...| +...+..+++|+||||+..... .....+...+..++..+|++++++++.. .+ ....
T Consensus 43 ~i~~-------------i~~~~~~qi~~iDTPG~~~~~~-----~l~~~~~~~~~~~~~~~D~il~vvd~~~-~~-~~~~ 102 (292)
T PRK00089 43 RIRG-------------IVTEDDAQIIFVDTPGIHKPKR-----ALNRAMNKAAWSSLKDVDLVLFVVDADE-KI-GPGD 102 (292)
T ss_pred cEEE-------------EEEcCCceEEEEECCCCCCchh-----HHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC-ChhH
Confidence 0011 2222346899999999976431 2445555667788999999999998665 22 2333
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCccccc-CCCeeEeeeCChhhhhccccHHHHHHHHHhHhccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRL-KFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEY 271 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l-~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~ 271 (610)
..++..+...+.|+++|+||+|+..........+....... ...++.+++....+++.+...+....++.++++.....
T Consensus 103 ~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~ 182 (292)
T PRK00089 103 EFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQI 182 (292)
T ss_pred HHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 44555555557899999999999844333333222111111 23466677777777777777777777777777766655
Q ss_pred chhhhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHH
Q 007263 272 KHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYTI 335 (610)
Q Consensus 272 ~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~el~~l~~~~~~~~~~~~~~l 335 (610)
++.+.+ ....+.+++.++.++++++||......+.+.+. ....+...+.+.+++++.++
T Consensus 183 td~~~r---~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i~v~~~~~k~i~ 241 (292)
T PRK00089 183 TDRPER---FLAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATIYVERDSQKGII 241 (292)
T ss_pred CCCCHH---HHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEEEEccCCceeEE
Confidence 554332 235688899999999999999987766666542 33345556666666665443
No 11
>PRK15494 era GTPase Era; Provisional
Probab=99.74 E-value=1.4e-17 Score=174.07 Aligned_cols=235 Identities=18% Similarity=0.249 Sum_probs=157.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
..|++||.+|+|||||+|+|+|..+ .+++..|.
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~-----~ivs~k~~------------------------------------------ 85 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKL-----SIVTPKVQ------------------------------------------ 85 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCce-----eeccCCCC------------------------------------------
Confidence 4899999999999999999999876 33333331
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~ 194 (610)
.+... +.- +...+..++.||||||+..... .+.......+..++..+|++|+++++.. .+.. ....
T Consensus 86 --tTr~~----~~~-~~~~~~~qi~~~DTpG~~~~~~-----~l~~~~~r~~~~~l~~aDvil~VvD~~~-s~~~-~~~~ 151 (339)
T PRK15494 86 --TTRSI----ITG-IITLKDTQVILYDTPGIFEPKG-----SLEKAMVRCAWSSLHSADLVLLIIDSLK-SFDD-ITHN 151 (339)
T ss_pred --CccCc----EEE-EEEeCCeEEEEEECCCcCCCcc-----cHHHHHHHHHHHHhhhCCEEEEEEECCC-CCCH-HHHH
Confidence 11000 000 1111234789999999965321 2444445556677899999999987543 2222 2223
Q ss_pred HHHHhCCCCCceEEEeecccCCCCCC-cHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHHHHHhHhccCCCCch
Q 007263 195 ISREVDPTGERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKH 273 (610)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~ 273 (610)
++..+...+.+.|+|+||+|+.+... +..+.+.. ......++.+++.+..+++.+...+....+|.+|++....+++
T Consensus 152 il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~--~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td 229 (339)
T PRK15494 152 ILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTE--NHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITD 229 (339)
T ss_pred HHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHh--cCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 44445555678899999999864311 11222211 1112357888888889999999999999999999998888888
Q ss_pred hhhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHH
Q 007263 274 LAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYTI 335 (610)
Q Consensus 274 ~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~el~~l~~~~~~~~~~~~~~l 335 (610)
.+.++ ...+.+++.++.++++++||......+.+.+.++....+...+.+++++++.++
T Consensus 230 ~~~~~---~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~v~~~sqk~ii 288 (339)
T PRK15494 230 LPMRF---IAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRESYKTII 288 (339)
T ss_pred CCHHH---HHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEEECCCCceeEE
Confidence 55433 346899999999999999999988777776544334456666667776665544
No 12
>PRK09866 hypothetical protein; Provisional
Probab=99.73 E-value=1.4e-13 Score=148.55 Aligned_cols=213 Identities=16% Similarity=0.220 Sum_probs=115.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccc---eeecc------------CCC-----
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREY---AEFLH------------IPR----- 94 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~---~~~~~------------~~~----- 94 (610)
|.++|+|..|+|||||+|+|+|..++|.+...+|.+|+.++..........+ ..|.. ...
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl~e 149 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTD 149 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCCcCceeeecCCccchHHHHHHhhHHHHHhhhhHHHH
Confidence 8999999999999999999999999999999999999976643221111111 00100 000
Q ss_pred --cccCChHHHHHHHHHH----------------------hhhhc---CCCCc------ccc-ccEEEEEecCC-----C
Q 007263 95 --KRFTDFAAVRKEIQDE----------------------TDRET---GRTKQ------ISS-VPIHLSIYSPN-----V 135 (610)
Q Consensus 95 --~~~~~~~~v~~~i~~~----------------------~~~~~---g~~~~------~s~-~~i~l~i~~~~-----~ 135 (610)
....|...+...+.+. ..+++ +..-. |-. -.|.++..... .
T Consensus 150 ~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~~~ 229 (741)
T PRK09866 150 VLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYP 229 (741)
T ss_pred HHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHHhhhhcCceeeeeeeecccccccc
Confidence 0001122222111111 00110 00000 100 12333333223 3
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCC--CceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTG--ERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~--~rti~VltK~ 213 (610)
.+++||||||+...... .+..+....+..+|+|++++++... . ......+++.+...+ .|+++|+||+
T Consensus 230 ~QIIFVDTPGIhk~~~~--------~L~k~M~eqL~eADvVLFVVDat~~-~-s~~DeeIlk~Lkk~~K~~PVILVVNKI 299 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP--------HLQKMLNQQLARASAVLAVLDYTQL-K-SISDEEVREAILAVGQSVPLYVLVNKF 299 (741)
T ss_pred CCEEEEECCCCCCccch--------HHHHHHHHHHhhCCEEEEEEeCCCC-C-ChhHHHHHHHHHhcCCCCCEEEEEEcc
Confidence 68999999999863211 1233344579999999999986431 2 222334555555555 4999999999
Q ss_pred cCCCCCCcH----HHHHcCcccccCC---CeeEeeeCChhhhhccccHHHH
Q 007263 214 DLMDKGTDA----ADILEGKSYRLKF---PWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 214 D~~~~~~~~----~~~l~~~~~~l~~---g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
|..+..++. .+.+......... ..++|+.+.+.+++.+.+.+..
T Consensus 300 Dl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 300 DQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred cCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 997544322 2222211011122 3556666666666655554443
No 13
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.71 E-value=2.5e-17 Score=160.69 Aligned_cols=221 Identities=15% Similarity=0.221 Sum_probs=150.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|||.+|+|||||.|.++|.++ .++||.+-+.+ .
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv-----~~vS~K~~TTr------------------------------------~ 109 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKV-----SAVSRKVHTTR------------------------------------H 109 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCcc-----cccccccccee------------------------------------e
Confidence 345899999999999999999999999 55555552222 1
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-cccHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSD 191 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~~~~~ 191 (610)
++.| |.+.+..++.|+||||+.......+.. +...+..-.+..+..+|++++++++++.. .....
T Consensus 110 ~ilg-------------i~ts~eTQlvf~DTPGlvs~~~~r~~~-l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~ 175 (379)
T KOG1423|consen 110 RILG-------------IITSGETQLVFYDTPGLVSKKMHRRHH-LMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPR 175 (379)
T ss_pred eeeE-------------EEecCceEEEEecCCcccccchhhhHH-HHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChH
Confidence 2223 566677899999999998754432211 22222334677799999999999887543 23345
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCCcHH---HHHcCcc--------------------cccCCCe------eEeee
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGTDAA---DILEGKS--------------------YRLKFPW------IGVVN 242 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~---~~l~~~~--------------------~~l~~g~------~~v~~ 242 (610)
.+..++.+. ..+.|.|+||+|...+...+. +.+.+.. .+-..|| |.|+.
T Consensus 176 vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSa 253 (379)
T KOG1423|consen 176 VLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSA 253 (379)
T ss_pred HHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEec
Confidence 666666665 478999999999987654321 2222111 1112245 67788
Q ss_pred CChhhhhccccHHHHHHHHHhHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 007263 243 RSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLEL 313 (610)
Q Consensus 243 ~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~ 313 (610)
.++.|++++..++...++.++|.+....-++ ........+.+++.|.+|+.+++||-.+.-...|++.
T Consensus 254 L~G~GikdlkqyLmsqa~~gpW~y~a~i~T~---~s~e~l~~e~VReklLd~~pqEVPY~lq~~i~~w~e~ 321 (379)
T KOG1423|consen 254 LYGEGIKDLKQYLMSQAPPGPWKYPADIVTE---ESPEFLCSESVREKLLDHLPQEVPYNLQVRILSWKER 321 (379)
T ss_pred ccccCHHHHHHHHHhcCCCCCCCCCcccccc---cCHHHHHHHHHHHHHHhhCccccCcceEEEEEEeeec
Confidence 8889999999988888888888776544333 2333344689999999999999999877655555543
No 14
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.71 E-value=5.8e-18 Score=155.22 Aligned_cols=148 Identities=28% Similarity=0.414 Sum_probs=96.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+++|.+|+|||||+|+|+|... .++.+|
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~------~v~n~p-------------------------------------------- 31 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ------KVGNWP-------------------------------------------- 31 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE------EEEEST--------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc------eecCCC--------------------------------------------
Confidence 689999999999999999999973 233333
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHh--cCCCeEEEEeecCCCccccHHHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~d~iil~v~~a~~d~~~~~~l 193 (610)
|.+.......+. . ....+.||||||+.+..... .. +.++.+|+ .++|.+|+++++.+ ..+.+
T Consensus 32 G~Tv~~~~g~~~--~---~~~~~~lvDlPG~ysl~~~s----~e---e~v~~~~l~~~~~D~ii~VvDa~~----l~r~l 95 (156)
T PF02421_consen 32 GTTVEKKEGIFK--L---GDQQVELVDLPGIYSLSSKS----EE---ERVARDYLLSEKPDLIIVVVDATN----LERNL 95 (156)
T ss_dssp TSSSEEEEEEEE--E---TTEEEEEEE----SSSSSSS----HH---HHHHHHHHHHTSSSEEEEEEEGGG----HHHHH
T ss_pred CCCeeeeeEEEE--e---cCceEEEEECCCcccCCCCC----cH---HHHHHHHHhhcCCCEEEEECCCCC----HHHHH
Confidence 333221111111 1 23579999999998754321 11 45667776 68999999998865 35667
Q ss_pred HHHHHhCCCCCceEEEeecccCCCCCCcH--HHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 194 KISREVDPTGERTFGVLTKIDLMDKGTDA--ADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~~~~~--~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
.++.++...|.|+++|+||+|...+..-. .+.+ ...++.+.++++.++.++++++.
T Consensus 96 ~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~L---s~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 96 YLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKL---SERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp HHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHH---HHHHTS-EEEEBTTTTBTHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHH---HHHhCCCEEEEEeCCCcCHHHHH
Confidence 78888888899999999999998654311 1222 23456677888888777766544
No 15
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.67 E-value=3.7e-15 Score=155.33 Aligned_cols=179 Identities=18% Similarity=0.282 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCC
Q 007263 4 LISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGS 83 (610)
Q Consensus 4 l~~~~~~lq~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~ 83 (610)
|-.+..+|.++.+..... .+..+--.||++|.||+|||||||+|+|.+. .+||..|
T Consensus 194 l~~~~~~l~~ll~~~~~g-------~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~------------ 249 (454)
T COG0486 194 LEELIAELDELLATAKQG-------KILREGLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIA------------ 249 (454)
T ss_pred HHHHHHHHHHHHHhhhhh-------hhhhcCceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCC------------
Confidence 344455555555444432 1223556899999999999999999999998 8999988
Q ss_pred ccceeeccCCCcccCChHHHHHHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHH
Q 007263 84 REYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIE 163 (610)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~ 163 (610)
|+|.++-...+.+ +..++.++||.|+..... .+++.--
T Consensus 250 --------------------------------GTTRDviee~i~i-----~G~pv~l~DTAGiRet~d-----~VE~iGI 287 (454)
T COG0486 250 --------------------------------GTTRDVIEEDINL-----NGIPVRLVDTAGIRETDD-----VVERIGI 287 (454)
T ss_pred --------------------------------CCccceEEEEEEE-----CCEEEEEEecCCcccCcc-----HHHHHHH
Confidence 5555544444444 456799999999975321 1333333
Q ss_pred HHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeC
Q 007263 164 NMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNR 243 (610)
Q Consensus 164 ~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~ 243 (610)
+-.++.++++|.|++++++... + ......+.. .-+.+.++++|+||.|+..+.... .. ....+..++.++..
T Consensus 288 eRs~~~i~~ADlvL~v~D~~~~-~-~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~-~~----~~~~~~~~i~iSa~ 359 (454)
T COG0486 288 ERAKKAIEEADLVLFVLDASQP-L-DKEDLALIE-LLPKKKPIIVVLNKADLVSKIELE-SE----KLANGDAIISISAK 359 (454)
T ss_pred HHHHHHHHhCCEEEEEEeCCCC-C-chhhHHHHH-hcccCCCEEEEEechhcccccccc-hh----hccCCCceEEEEec
Confidence 4478889999999999986653 2 222232333 456689999999999998764311 00 23334467888888
Q ss_pred ChhhhhccccHHH
Q 007263 244 SQADINKNVDMIA 256 (610)
Q Consensus 244 s~~~~~~~~~~~~ 256 (610)
+.++++.+...+.
T Consensus 360 t~~Gl~~L~~~i~ 372 (454)
T COG0486 360 TGEGLDALREAIK 372 (454)
T ss_pred CccCHHHHHHHHH
Confidence 8877776555443
No 16
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.64 E-value=1.6e-15 Score=157.56 Aligned_cols=159 Identities=23% Similarity=0.317 Sum_probs=112.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
|.|++||.+|+|||||+|+|+|... .+|...|-+.+ ++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-----AIV~D~pGvTR------------------------------------Dr~ 42 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-----AIVSDTPGVTR------------------------------------DRI 42 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-----eEeecCCCCcc------------------------------------CCc
Confidence 8999999999999999999999987 77776663332 122
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~ 194 (610)
.|. .++ ....+.+|||+|+.... ++.+..++...+...+..+|+|||+|+.-. ..+.....
T Consensus 43 y~~----------~~~---~~~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~--Git~~D~~ 103 (444)
T COG1160 43 YGD----------AEW---LGREFILIDTGGLDDGD----EDELQELIREQALIAIEEADVILFVVDGRE--GITPADEE 103 (444)
T ss_pred cce----------eEE---cCceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCCEEEEEEeCCC--CCCHHHHH
Confidence 221 111 12349999999998642 245889999999999999999999997543 23555666
Q ss_pred HHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCC-eeEeeeCChhhhhccccHHHHH
Q 007263 195 ISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
+|+.+.+.++|+|+|+||+|..+......++ +.+++| .++++.-...++.++.+.....
T Consensus 104 ia~~Lr~~~kpviLvvNK~D~~~~e~~~~ef-----yslG~g~~~~ISA~Hg~Gi~dLld~v~~~ 163 (444)
T COG1160 104 IAKILRRSKKPVILVVNKIDNLKAEELAYEF-----YSLGFGEPVPISAEHGRGIGDLLDAVLEL 163 (444)
T ss_pred HHHHHHhcCCCEEEEEEcccCchhhhhHHHH-----HhcCCCCceEeehhhccCHHHHHHHHHhh
Confidence 8888887789999999999987444333333 455554 3445554456666666655444
No 17
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.56 E-value=5.8e-14 Score=147.16 Aligned_cols=157 Identities=18% Similarity=0.296 Sum_probs=99.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
...|+|++||.+|+|||||+|+|+|..+...+...+|+-|++-.
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~------------------------------------ 230 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRR------------------------------------ 230 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEE------------------------------------
Confidence 36799999999999999999999998754333333444442211
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH-
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS- 190 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~- 190 (610)
+.-++...+.|+||||+.+. -|.+..+.++. +..++.++|++|+|++.++.+....
T Consensus 231 ------------------i~~~~~~~i~l~DT~G~~~~----l~~~lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~ 287 (351)
T TIGR03156 231 ------------------LDLPDGGEVLLTDTVGFIRD----LPHELVAAFRA-TLEEVREADLLLHVVDASDPDREEQI 287 (351)
T ss_pred ------------------EEeCCCceEEEEecCccccc----CCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHH
Confidence 22233457899999999652 13335555555 4567899999999998765432211
Q ss_pred -HHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 191 -DAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 191 -~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
....+.+.+...+.|+++|+||+|+.+.. .......+ ...++.+++.+..+++.+..
T Consensus 288 ~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-~v~~~~~~-----~~~~i~iSAktg~GI~eL~~ 345 (351)
T TIGR03156 288 EAVEKVLEELGAEDIPQLLVYNKIDLLDEP-RIERLEEG-----YPEAVFVSAKTGEGLDLLLE 345 (351)
T ss_pred HHHHHHHHHhccCCCCEEEEEEeecCCChH-hHHHHHhC-----CCCEEEEEccCCCCHHHHHH
Confidence 12245566555578999999999997532 12111110 12356677766666555443
No 18
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=3.3e-14 Score=141.42 Aligned_cols=156 Identities=23% Similarity=0.372 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHHhccCC-CCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCC
Q 007263 4 LISLVNKIQRACTALGDHG-EASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEG 82 (610)
Q Consensus 4 l~~~~~~lq~~~~~~~~~~-~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~ 82 (610)
+.++++++.+-+.-|+... .-.+||....++|+|+|.|.||+|||||+++|++.+. -+-.+|
T Consensus 137 ~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp------EvA~YP----------- 199 (346)
T COG1084 137 VASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP------EVAPYP----------- 199 (346)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC------ccCCCC-----------
Confidence 5567777777777776532 3357888888999999999999999999999999863 122233
Q ss_pred CccceeeccCCCcccCChHHHHHHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHH
Q 007263 83 SREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDI 162 (610)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i 162 (610)
|+.+.|.+-....+...+.+|||||+-+-+.. -...|
T Consensus 200 --------------------------------------FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~-----ErN~I 236 (346)
T COG1084 200 --------------------------------------FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLE-----ERNEI 236 (346)
T ss_pred --------------------------------------ccccceeEeeeecCCceEEEecCCcccCCChH-----HhcHH
Confidence 33333444455555667999999999875543 34455
Q ss_pred HHHHHHHhcC-CCeEEEEeecCCC-ccccHHHHHHHHHhCCC-CCceEEEeecccCCCCC
Q 007263 163 ENMVRSYIEK-PNCIILAISPANQ-DLATSDAIKISREVDPT-GERTFGVLTKIDLMDKG 219 (610)
Q Consensus 163 ~~~~~~yi~~-~d~iil~v~~a~~-d~~~~~~l~l~~~~~~~-~~rti~VltK~D~~~~~ 219 (610)
+..+-..++. .++|+++++++.. .+.-.+-..+..++.+. ..|++.|+||+|..+.+
T Consensus 237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 6555555655 5677788887644 33334445566666654 46899999999998654
No 19
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=5.1e-14 Score=149.24 Aligned_cols=181 Identities=18% Similarity=0.142 Sum_probs=109.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
-+..|++||.+|||||||||+|++...-......+|+.|..-.
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Gi------------------------------------- 200 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGV------------------------------------- 200 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEE-------------------------------------
Confidence 3458999999999999999999997631111123444442211
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCC---Ccccc
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN---QDLAT 189 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~---~d~~~ 189 (610)
+..++...++|+||||+...+..+ . ..... ..++++.+|+++++++.+. .+..
T Consensus 201 -----------------v~~~~~~~i~~vDtPGi~~~a~~~--~---~Lg~~-~l~~i~radvlL~VVD~s~~~~~d~~- 256 (390)
T PRK12298 201 -----------------VRVDDERSFVVADIPGLIEGASEG--A---GLGIR-FLKHLERCRVLLHLIDIAPIDGSDPV- 256 (390)
T ss_pred -----------------EEeCCCcEEEEEeCCCccccccch--h---hHHHH-HHHHHHhCCEEEEEeccCcccccChH-
Confidence 112223358999999998644321 1 11122 3357899999999998652 2221
Q ss_pred HHHHHHHHHhCC-----CCCceEEEeecccCCCCCCcHHHHHcCcccccC--CCeeEeeeCChhhhhccccHHHHHHHHH
Q 007263 190 SDAIKISREVDP-----TGERTFGVLTKIDLMDKGTDAADILEGKSYRLK--FPWIGVVNRSQADINKNVDMIAARRRER 262 (610)
Q Consensus 190 ~~~l~l~~~~~~-----~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~--~g~~~v~~~s~~~~~~~~~~~~~~~~e~ 262 (610)
.....+.+++.. .+.|.++|+||+|+.... ...+.+......+. ..++.++..+..+++.+...+.....+.
T Consensus 257 e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~-el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 257 ENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE-EAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred HHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH-HHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 111223333322 358999999999987543 22222221111111 2467788888888888888877777777
Q ss_pred hHhccCCCCchhh
Q 007263 263 EYFSTTPEYKHLA 275 (610)
Q Consensus 263 ~~f~~~~~~~~~~ 275 (610)
++++....+++.+
T Consensus 336 ~~~~~~~~~td~~ 348 (390)
T PRK12298 336 PREEAEEAEAPEK 348 (390)
T ss_pred cccCCcccccCcc
Confidence 7777666666544
No 20
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.55 E-value=1.4e-13 Score=149.24 Aligned_cols=156 Identities=22% Similarity=0.302 Sum_probs=97.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+-++|+++|.+|+|||||+|+|+|.++ .+++..|
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~----------------------------------------- 247 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER-----AIVTDIA----------------------------------------- 247 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCC-----------------------------------------
Confidence 457899999999999999999999765 3333333
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
|.+..+... .+.+ +...+.++||||+.... ..+...--..+..++..+|++++|++..+.. +.+.
T Consensus 248 ---gtT~d~~~~--~i~~---~g~~i~l~DT~G~~~~~-----~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~--s~~~ 312 (449)
T PRK05291 248 ---GTTRDVIEE--HINL---DGIPLRLIDTAGIRETD-----DEVEKIGIERSREAIEEADLVLLVLDASEPL--TEED 312 (449)
T ss_pred ---CcccccEEE--EEEE---CCeEEEEEeCCCCCCCc-----cHHHHHHHHHHHHHHHhCCEEEEEecCCCCC--ChhH
Confidence 111111111 1111 23468999999986421 1122111223567899999999999875432 2223
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHH
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 259 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (610)
..+... ..+.|+++|+||+|+.+.... . ......++.+++.+..+++.+...+....
T Consensus 313 ~~~l~~--~~~~piiiV~NK~DL~~~~~~-~-------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 313 DEILEE--LKDKPVIVVLNKADLTGEIDL-E-------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred HHHHHh--cCCCCcEEEEEhhhccccchh-h-------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 344443 446899999999999754321 1 12234678888888888887777665544
No 21
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.53 E-value=7.8e-14 Score=134.92 Aligned_cols=174 Identities=18% Similarity=0.253 Sum_probs=101.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc--ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
+|++||.+|+|||||+|+|+|...+.++.. .+|+.+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~-------------------------------------- 43 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKES-------------------------------------- 43 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceee--------------------------------------
Confidence 699999999999999999999887655532 2333221000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
..+ +...+++|||||+.+... ..+++...+...+......+|++|+++............+
T Consensus 44 --------------~~~---~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l 104 (196)
T cd01852 44 --------------AVW---DGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAV 104 (196)
T ss_pred --------------EEE---CCeEEEEEECcCCCCccC--ChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHH
Confidence 001 234689999999987542 1233444444444555678899988886543111112333
Q ss_pred HHHHHhCC--CCCceEEEeecccCCCCCCcHHHHHcCc-------ccccCCCeeEeeeCC-----hhhhhccccHHHHHH
Q 007263 194 KISREVDP--TGERTFGVLTKIDLMDKGTDAADILEGK-------SYRLKFPWIGVVNRS-----QADINKNVDMIAARR 259 (610)
Q Consensus 194 ~l~~~~~~--~~~rti~VltK~D~~~~~~~~~~~l~~~-------~~~l~~g~~~v~~~s-----~~~~~~~~~~~~~~~ 259 (610)
+.++.+-. ...++++|+|+.|.+... ...+.+... ...++..|+.+.++. ...++.+...++...
T Consensus 105 ~~l~~~fg~~~~~~~ivv~T~~d~l~~~-~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 105 ETLQELFGEKVLDHTIVLFTRGDDLEGG-TLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred HHHHHHhChHhHhcEEEEEECccccCCC-cHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 33333311 137899999999988654 233332221 223344466666654 244556666666666
Q ss_pred HH-HhHhcc
Q 007263 260 RE-REYFST 267 (610)
Q Consensus 260 ~e-~~~f~~ 267 (610)
.| ..++++
T Consensus 184 ~~~~~~~~~ 192 (196)
T cd01852 184 KENGGKPYT 192 (196)
T ss_pred HhcCCCCCC
Confidence 66 444443
No 22
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.53 E-value=5.2e-13 Score=143.97 Aligned_cols=157 Identities=19% Similarity=0.215 Sum_probs=94.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
..-.+|+++|.+|+|||||+|+|+|.+. .+++..|...+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~-----aivs~~pgtTr------------------------------------ 239 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDR-----AIVSDIKGTTR------------------------------------ 239 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCCCcEE------------------------------------
Confidence 3567999999999999999999999764 34444441111
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~ 191 (610)
.+.... +.+ +...+.++||||+..... .+...--.....|++.+|++|+|++..+.. +.+
T Consensus 240 --------d~~~~~--i~~---~g~~v~l~DTaG~~~~~~-----~ie~~gi~~~~~~~~~aD~il~V~D~s~~~--s~~ 299 (442)
T TIGR00450 240 --------DVVEGD--FEL---NGILIKLLDTAGIREHAD-----FVERLGIEKSFKAIKQADLVIYVLDASQPL--TKD 299 (442)
T ss_pred --------EEEEEE--EEE---CCEEEEEeeCCCcccchh-----HHHHHHHHHHHHHHhhCCEEEEEEECCCCC--Chh
Confidence 111111 111 223578999999865321 111111234668899999999999876532 222
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHH
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
.. +...+...+.|+++|+||+|+... +...+ ...++..++.++..+ .+++.+...+..
T Consensus 300 ~~-~l~~~~~~~~piIlV~NK~Dl~~~--~~~~~----~~~~~~~~~~vSak~-~gI~~~~~~L~~ 357 (442)
T TIGR00450 300 DF-LIIDLNKSKKPFILVLNKIDLKIN--SLEFF----VSSKVLNSSNLSAKQ-LKIKALVDLLTQ 357 (442)
T ss_pred HH-HHHHHhhCCCCEEEEEECccCCCc--chhhh----hhhcCCceEEEEEec-CCHHHHHHHHHH
Confidence 22 444555457899999999998644 22111 122334567777765 345555544443
No 23
>PRK11058 GTPase HflX; Provisional
Probab=99.52 E-value=1.6e-13 Score=147.09 Aligned_cols=126 Identities=20% Similarity=0.317 Sum_probs=83.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.+|.|++||.+|+|||||+|+|+|.++...+.-.+|+-|++-.
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~------------------------------------- 238 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRR------------------------------------- 238 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEE-------------------------------------
Confidence 5799999999999999999999998763222222333332111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH-
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD- 191 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~- 191 (610)
+.-++...+.|+||||+.+. .|.+....+.. +..++..+|.+|+|++.++.......
T Consensus 239 -----------------i~l~~~~~~~l~DTaG~~r~----lp~~lve~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l~ 296 (426)
T PRK11058 239 -----------------IDVADVGETVLADTVGFIRH----LPHDLVAAFKA-TLQETRQATLLLHVVDAADVRVQENIE 296 (426)
T ss_pred -----------------EEeCCCCeEEEEecCccccc----CCHHHHHHHHH-HHHHhhcCCEEEEEEeCCCccHHHHHH
Confidence 11122335789999999652 23344444554 45678999999999987764322221
Q ss_pred -HHHHHHHhCCCCCceEEEeecccCCC
Q 007263 192 -AIKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 192 -~l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
...++..+...+.|+++|+||+|+.+
T Consensus 297 ~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 297 AVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred HHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 23456666556789999999999974
No 24
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.49 E-value=2.7e-13 Score=126.17 Aligned_cols=123 Identities=21% Similarity=0.333 Sum_probs=80.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCccccccc-ccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV-TRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~-Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
-.+|+++|.+|+|||||+|+|+|..+.+.+.... |+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 41 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR----------------------------------------- 41 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece-----------------------------------------
Confidence 4689999999999999999999987522221111 0000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+. .+......++.++||||+...... ....+......++..+|.+++++++... ..+..
T Consensus 42 -------------~~-~~~~~~~~~~~liDtpG~~~~~~~-----~~~~~~~~~~~~~~~~d~i~~v~d~~~~--~~~~~ 100 (168)
T cd04163 42 -------------IR-GIYTDDDAQIIFVDTPGIHKPKKK-----LGERMVKAAWSALKDVDLVLFVVDASEP--IGEGD 100 (168)
T ss_pred -------------EE-EEEEcCCeEEEEEECCCCCcchHH-----HHHHHHHHHHHHHHhCCEEEEEEECCCc--cCchH
Confidence 00 011222346899999998764322 2223455667789999999999987654 12333
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+.+.+...+.+.++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~~iiv~nK~Dl~~~ 126 (168)
T cd04163 101 EFILELLKKSKTPVILVLNKIDLVKD 126 (168)
T ss_pred HHHHHHHHHhCCCEEEEEEchhcccc
Confidence 34445555557899999999999843
No 25
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=6.3e-13 Score=124.59 Aligned_cols=127 Identities=30% Similarity=0.478 Sum_probs=86.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.+|.|+++|..|+|||||||+|+|..-|.|- +..|
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArt----SktP----------------------------------------- 57 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLART----SKTP----------------------------------------- 57 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeec----CCCC-----------------------------------------
Confidence 7899999999999999999999997643332 2333
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcC-CC--eEEEEeecCCCcccc
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK-PN--CIILAISPANQDLAT 189 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~-~d--~iil~v~~a~~d~~~ 189 (610)
|.|..+. .+.. ...+.|||+||+.-... +.+..+.+..++..|++. ++ .++++++ +...+ .
T Consensus 58 ---GrTq~iN-------ff~~-~~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD-~r~~~-~ 121 (200)
T COG0218 58 ---GRTQLIN-------FFEV-DDELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLID-ARHPP-K 121 (200)
T ss_pred ---CccceeE-------EEEe-cCcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEE-CCCCC-c
Confidence 2221110 1111 11388999999875433 446888999999999975 34 3344444 33333 3
Q ss_pred HHHHHHHHHhCCCCCceEEEeecccCCCCCC
Q 007263 190 SDAIKISREVDPTGERTFGVLTKIDLMDKGT 220 (610)
Q Consensus 190 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~~ 220 (610)
....++...+...+.++++|+||+|.+..+.
T Consensus 122 ~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 122 DLDREMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEccccCChhH
Confidence 3344566777777899999999999998654
No 26
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=4.4e-13 Score=139.34 Aligned_cols=163 Identities=18% Similarity=0.230 Sum_probs=94.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
-++.|++||.+|||||||||+|++...-......+|+.|..-.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~------------------------------------- 199 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGV------------------------------------- 199 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEE-------------------------------------
Confidence 4678999999999999999999986521111122344442111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+..++...++++||||+...+..+ ..+.....++++.++++|+|++.++.+. ..+.
T Consensus 200 -----------------v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~vlI~ViD~s~~~s-~e~~ 255 (335)
T PRK12299 200 -----------------VRVDDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRLLLHLVDIEAVDP-VEDY 255 (335)
T ss_pred -----------------EEeCCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcCEEEEEEcCCCCCC-HHHH
Confidence 111233468999999998644321 1123345567888999999998765431 1122
Q ss_pred HHHHH---HhCC--CCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHH
Q 007263 193 IKISR---EVDP--TGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 193 l~l~~---~~~~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
..+.. ..++ ...+.++|+||+|+.+...................++.+++.+..+++++...+.
T Consensus 256 ~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~ 324 (335)
T PRK12299 256 KTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALW 324 (335)
T ss_pred HHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 22323 3333 3689999999999875432111111111112234566667666666655554443
No 27
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.46 E-value=7.9e-13 Score=128.65 Aligned_cols=156 Identities=17% Similarity=0.285 Sum_probs=91.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
...|+|+|+|.+|+|||||+|+|+|..+.+.+...+|.-|..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~-------------------------------------- 80 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTT-------------------------------------- 80 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecccee--------------------------------------
Confidence 357999999999999999999999987533332222222210
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~-- 189 (610)
..+..++...++||||||+.+.. +.......... ..++..+|.++++++..+.....
T Consensus 81 ----------------~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~-~~~~~~~d~ii~v~D~~~~~~~~~~ 139 (204)
T cd01878 81 ----------------RRLRLPDGREVLLTDTVGFIRDL----PHQLVEAFRST-LEEVAEADLLLHVVDASDPDYEEQI 139 (204)
T ss_pred ----------------EEEEecCCceEEEeCCCccccCC----CHHHHHHHHHH-HHHHhcCCeEEEEEECCCCChhhHH
Confidence 01112223378999999986431 11222333333 34567899999999876533221
Q ss_pred HHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcc
Q 007263 190 SDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKN 251 (610)
Q Consensus 190 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (610)
.....+.+.+...+.++++|+||+|+....... .. .......++.+++....+++..
T Consensus 140 ~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~~l 196 (204)
T cd01878 140 ETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-ER----LEAGRPDAVFISAKTGEGLDEL 196 (204)
T ss_pred HHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-HH----hhcCCCceEEEEcCCCCCHHHH
Confidence 122345555555578999999999997543211 11 1112234556666555544443
No 28
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.45 E-value=4.3e-13 Score=125.80 Aligned_cols=117 Identities=21% Similarity=0.301 Sum_probs=74.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
|.|+|+|.+|+|||||+|+|++..+.+.....+|.-.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~------------------------------------------- 37 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI------------------------------------------- 37 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEee-------------------------------------------
Confidence 7899999999999999999998765222111111110
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~ 194 (610)
+ .. .+....+...++++|||||.... ..+...++..+|++++++++...+ ......
T Consensus 38 -~------~~--~~~~~~~~~~~~~iiDtpG~~~~-------------~~~~~~~~~~~d~il~v~d~~~~~--~~~~~~ 93 (168)
T cd01887 38 -G------AF--EVPAEVLKIPGITFIDTPGHEAF-------------TNMRARGASLTDIAILVVAADDGV--MPQTIE 93 (168)
T ss_pred -c------cE--EEecccCCcceEEEEeCCCcHHH-------------HHHHHHHHhhcCEEEEEEECCCCc--cHHHHH
Confidence 0 00 00010013457999999996432 445566788999999999876532 223333
Q ss_pred HHHHhCCCCCceEEEeecccCCCC
Q 007263 195 ISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
.+..+...+.|.++|+||+|+.+.
T Consensus 94 ~~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 94 AIKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHHHHHHcCCCEEEEEEceecccc
Confidence 333334457899999999998743
No 29
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.44 E-value=7.2e-13 Score=116.76 Aligned_cols=115 Identities=24% Similarity=0.332 Sum_probs=74.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
+|+|+|.+|+|||||+|+|+|.+..+.+.. .+|+.+.. .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~-~--------------------------------------- 40 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVY-G--------------------------------------- 40 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEE-E---------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeee-e---------------------------------------
Confidence 689999999999999999999754333332 34444411 1
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~ 194 (610)
...-+...+.|+||||+...... +........+.+.+..+|++++|++... ........
T Consensus 41 ---------------~~~~~~~~~~~vDtpG~~~~~~~----~~~~~~~~~~~~~~~~~d~ii~vv~~~~--~~~~~~~~ 99 (116)
T PF01926_consen 41 ---------------QFEYNNKKFILVDTPGINDGESQ----DNDGKEIRKFLEQISKSDLIIYVVDASN--PITEDDKN 99 (116)
T ss_dssp ---------------EEEETTEEEEEEESSSCSSSSHH----HHHHHHHHHHHHHHCTESEEEEEEETTS--HSHHHHHH
T ss_pred ---------------eeeeceeeEEEEeCCCCcccchh----hHHHHHHHHHHHHHHHCCEEEEEEECCC--CCCHHHHH
Confidence 00002335689999999764322 1101122335555689999999998443 33344556
Q ss_pred HHHHhCCCCCceEEEeec
Q 007263 195 ISREVDPTGERTFGVLTK 212 (610)
Q Consensus 195 l~~~~~~~~~rti~VltK 212 (610)
+.+++. .+.|+++|+||
T Consensus 100 ~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 100 ILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHH-TTSEEEEEEES
T ss_pred HHHHHh-cCCCEEEEEcC
Confidence 777776 78999999998
No 30
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.43 E-value=1.5e-12 Score=122.23 Aligned_cols=155 Identities=16% Similarity=0.260 Sum_probs=81.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
|.|+++|.+|+|||||+|+|+|..+ +.+.- ..|..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~------------------------------------------ 37 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSL------------------------------------------ 37 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccce------------------------------------------
Confidence 7899999999999999999999764 21110 011111
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHh-cCCCeEEEEeecCCCcc-ccHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI-EKPNCIILAISPANQDL-ATSD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi-~~~d~iil~v~~a~~d~-~~~~ 191 (610)
.+.........++|+||||+...+... .. .+......++ ..+|++|+++++..... ....
T Consensus 38 -------------~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~----~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~ 99 (168)
T cd01897 38 -------------FVGHFDYKYLRWQVIDTPGLLDRPLEE-RN----TIEMQAITALAHLRAAVLFLFDPSETCGYSLEE 99 (168)
T ss_pred -------------eEEEEccCceEEEEEECCCcCCccccC-Cc----hHHHHHHHHHHhccCcEEEEEeCCcccccchHH
Confidence 000111123478999999985432111 11 1111111122 23688888888765322 1122
Q ss_pred HHHHHHHhCCC--CCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 192 AIKISREVDPT--GERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 192 ~l~l~~~~~~~--~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
...+...+... +.|+++|+||+|+..... ... ...........++.+++.+..+++++.
T Consensus 100 ~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (168)
T cd01897 100 QLSLFEEIKPLFKNKPVIVVLNKIDLLTFED-LSE-IEEEEELEGEEVLKISTLTEEGVDEVK 160 (168)
T ss_pred HHHHHHHHHhhcCcCCeEEEEEccccCchhh-HHH-HHHhhhhccCceEEEEecccCCHHHHH
Confidence 23334444332 789999999999975432 111 111111122345556665555554443
No 31
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.43 E-value=1.9e-12 Score=121.62 Aligned_cols=128 Identities=23% Similarity=0.292 Sum_probs=78.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
.++|+++|..|+|||||+|+|+|....+.+....|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 39 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRD------------------------------------------ 39 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccC------------------------------------------
Confidence 46899999999999999999999764322221111110
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
.... .+.. +..++++|||||+...... ..............++..+|.++++++..+. .+....
T Consensus 40 -------~~~~--~~~~---~~~~~~iiDtpG~~~~~~~--~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~ 103 (174)
T cd01895 40 -------SIDV--PFEY---DGKKYTLIDTAGIRRKGKV--EEGIEKYSVLRTLKAIERADVVLLVIDATEG--ITEQDL 103 (174)
T ss_pred -------ceee--EEEE---CCeeEEEEECCCCccccch--hccHHHHHHHHHHHHHhhcCeEEEEEeCCCC--cchhHH
Confidence 0000 1111 2235789999999764221 1112211112234567899999999986542 223444
Q ss_pred HHHHHhCCCCCceEEEeecccCCCCC
Q 007263 194 KISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
.+.+.+...+.+.++|+||+|+.+..
T Consensus 104 ~~~~~~~~~~~~~iiv~nK~Dl~~~~ 129 (174)
T cd01895 104 RIAGLILEEGKALVIVVNKWDLVEKD 129 (174)
T ss_pred HHHHHHHhcCCCEEEEEeccccCCcc
Confidence 55555555679999999999998653
No 32
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.42 E-value=2.7e-12 Score=139.56 Aligned_cols=125 Identities=20% Similarity=0.280 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
...+|+|+|.+|+|||||+|+|+|.+..+.+.. .+|+-+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~---------------------------------------- 210 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDS---------------------------------------- 210 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECc----------------------------------------
Confidence 456899999999999999999999764222111 111111
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~ 191 (610)
+...+.. +...+++|||||+.+.... .+.+.......+..+++.+|++|+|+++.. ..+..
T Consensus 211 --------------~~~~~~~-~~~~~~liDT~G~~~~~~~--~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~--~~~~~ 271 (429)
T TIGR03594 211 --------------IDIPFER-NGKKYLLIDTAGIRRKGKV--TEGVEKYSVLRTLKAIERADVVLLVLDATE--GITEQ 271 (429)
T ss_pred --------------EeEEEEE-CCcEEEEEECCCccccccc--hhhHHHHHHHHHHHHHHhCCEEEEEEECCC--CccHH
Confidence 1111111 2236899999999764322 111222222334578999999999998764 23344
Q ss_pred HHHHHHHhCCCCCceEEEeecccCC
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLM 216 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~ 216 (610)
...+++.+...+.+.|+|+||+|+.
T Consensus 272 ~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 272 DLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHHHHHcCCcEEEEEECcccC
Confidence 5566776666789999999999998
No 33
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.42 E-value=7.3e-13 Score=137.97 Aligned_cols=156 Identities=21% Similarity=0.299 Sum_probs=102.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+..+|++||.||+|||||+|+|+|..- .+++..|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR-----~Iv~~~a----------------------------------------- 210 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER-----VIVSDIA----------------------------------------- 210 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCce-----EEecCCC-----------------------------------------
Confidence 467999999999999999999999874 3333333
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
|.+ .+.|...+. .+...+.||||.|+-+...-. ++++..--.-+...+..+|+++|++++.. .+ +...
T Consensus 211 ---GTT----RD~I~~~~e-~~~~~~~liDTAGiRrk~ki~--e~~E~~Sv~rt~~aI~~a~vvllviDa~~-~~-~~qD 278 (444)
T COG1160 211 ---GTT----RDSIDIEFE-RDGRKYVLIDTAGIRRKGKIT--ESVEKYSVARTLKAIERADVVLLVIDATE-GI-SEQD 278 (444)
T ss_pred ---Ccc----ccceeeeEE-ECCeEEEEEECCCCCcccccc--cceEEEeehhhHhHHhhcCEEEEEEECCC-Cc-hHHH
Confidence 332 233333332 245679999999998754321 11111111224567889999999887653 34 4556
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCc--ccccCCCeeEeeeCChh
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGK--SYRLKFPWIGVVNRSQA 246 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~--~~~l~~g~~~v~~~s~~ 246 (610)
++++..+...|..+++|+||||+++..+...+..+.. ..--.++|..+.+.|+.
T Consensus 279 ~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~ 334 (444)
T COG1160 279 LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISAL 334 (444)
T ss_pred HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEec
Confidence 6788888889999999999999998743332222211 11123577777777764
No 34
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=3.5e-12 Score=139.78 Aligned_cols=127 Identities=20% Similarity=0.280 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|+++|.+|+|||||+|+|+|..+. .++..|
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~-----~~s~~~----------------------------------------- 243 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS-----VVDDVA----------------------------------------- 243 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc-----cccCCC-----------------------------------------
Confidence 4689999999999999999999998652 222222
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHH-HHHHhcCCCeEEEEeecCCCccccHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENM-VRSYIEKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~-~~~yi~~~d~iil~v~~a~~d~~~~~ 191 (610)
|.+....... +++ +...+.||||||+.+..... ...+....+ ...+++.+|++|+|+++... .+..
T Consensus 244 ---gtT~d~~~~~--~~~---~~~~~~l~DTaG~~~~~~~~---~~~e~~~~~~~~~~i~~ad~vilV~Da~~~--~s~~ 310 (472)
T PRK03003 244 ---GTTVDPVDSL--IEL---GGKTWRFVDTAGLRRRVKQA---SGHEYYASLRTHAAIEAAEVAVVLIDASEP--ISEQ 310 (472)
T ss_pred ---CccCCcceEE--EEE---CCEEEEEEECCCcccccccc---chHHHHHHHHHHHHHhcCCEEEEEEeCCCC--CCHH
Confidence 1111111111 111 22357899999986532211 112222222 34578999999999986542 2344
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
.+.++..+...+.++|+|+||+|+.+.
T Consensus 311 ~~~~~~~~~~~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 311 DQRVLSMVIEAGRALVLAFNKWDLVDE 337 (472)
T ss_pred HHHHHHHHHHcCCCEEEEEECcccCCh
Confidence 455666666678999999999999753
No 35
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.41 E-value=1.4e-12 Score=125.90 Aligned_cols=163 Identities=23% Similarity=0.300 Sum_probs=92.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.+|.|+|+|.+|+|||||+|+|+|..+.+..+.. |
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~----~----------------------------------------- 57 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKT----P----------------------------------------- 57 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC----C-----------------------------------------
Confidence 7899999999999999999999997643322111 1
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCC---CeEEEEeecCCCcccc
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP---NCIILAISPANQDLAT 189 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~---d~iil~v~~a~~d~~~ 189 (610)
|.+. .+..... ..++.||||||+.... .+.........++..|++.. +.++++++... .. .
T Consensus 58 ---~~t~-------~~~~~~~-~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~-~ 121 (196)
T PRK00454 58 ---GRTQ-------LINFFEV-NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRH-PL-K 121 (196)
T ss_pred ---Ccee-------EEEEEec-CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEEEEecCC-CC-C
Confidence 0000 0001111 2579999999976532 23334556677788888765 45656665433 22 2
Q ss_pred HHHHHHHHHhCCCCCceEEEeecccCCCCCCc--HHHHHcCcccccCCCeeEeeeCChhhhhccccHHH
Q 007263 190 SDAIKISREVDPTGERTFGVLTKIDLMDKGTD--AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 190 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
.....+.+.+...+.++++|+||+|+.+.+.. ..+.+..........++.+++.+..++++....+.
T Consensus 122 ~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~ 190 (196)
T PRK00454 122 ELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIA 190 (196)
T ss_pred HHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHH
Confidence 22223344445567889999999999755421 11111111111134555666655555555444443
No 36
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.41 E-value=1.2e-12 Score=123.18 Aligned_cols=110 Identities=19% Similarity=0.255 Sum_probs=58.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC-ccccH--HHHHHHHHhCC--CCCceEEEe
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATS--DAIKISREVDP--TGERTFGVL 210 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~-d~~~~--~~l~l~~~~~~--~~~rti~Vl 210 (610)
..+.|+||||+....... ..+ .......+..+|++++|++..+. +...+ ...+.+....+ .+.|.++|+
T Consensus 48 ~~~~l~DtpG~~~~~~~~--~~~----~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~ 121 (170)
T cd01898 48 RSFVVADIPGLIEGASEG--KGL----GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVL 121 (170)
T ss_pred CeEEEEecCcccCccccc--CCc----hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEE
Confidence 378999999986432211 111 12233445679999999987654 22111 11122223322 368999999
Q ss_pred ecccCCCCCCcHHHHHcCcccc-cCCCeeEeeeCChhhhhccc
Q 007263 211 TKIDLMDKGTDAADILEGKSYR-LKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 211 tK~D~~~~~~~~~~~l~~~~~~-l~~g~~~v~~~s~~~~~~~~ 252 (610)
||+|+.++... .+.+...... ....++.+++....+++.+.
T Consensus 122 NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 163 (170)
T cd01898 122 NKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGLDELL 163 (170)
T ss_pred EchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHH
Confidence 99998765432 1111111111 12346666666555554433
No 37
>COG2262 HflX GTPases [General function prediction only]
Probab=99.41 E-value=3.1e-12 Score=131.29 Aligned_cols=161 Identities=17% Similarity=0.261 Sum_probs=111.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
...|.|++||-.|||||||+|+|+|...+-.+.-..|--|+.-+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~------------------------------------ 233 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRR------------------------------------ 233 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeE------------------------------------
Confidence 58999999999999999999999998864455445555553322
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH-
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS- 190 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~- 190 (610)
+.-++...+.|-||-||++. -|..+.+..++ +.+-+..+|.+++||++++.++..+
T Consensus 234 ------------------~~l~~g~~vlLtDTVGFI~~----LP~~LV~AFks-TLEE~~~aDlllhVVDaSdp~~~~~~ 290 (411)
T COG2262 234 ------------------IELGDGRKVLLTDTVGFIRD----LPHPLVEAFKS-TLEEVKEADLLLHVVDASDPEILEKL 290 (411)
T ss_pred ------------------EEeCCCceEEEecCccCccc----CChHHHHHHHH-HHHHhhcCCEEEEEeecCChhHHHHH
Confidence 22223457899999999883 46667777766 6677889999999999887654432
Q ss_pred -HHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHH
Q 007263 191 -DAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 191 -~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
....++.++.-...|+|.|+||+|++.+.. ....+.... ...+.|+..+..+++.+...+.
T Consensus 291 ~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-~~~~~~~~~----~~~v~iSA~~~~gl~~L~~~i~ 352 (411)
T COG2262 291 EAVEDVLAEIGADEIPIILVLNKIDLLEDEE-ILAELERGS----PNPVFISAKTGEGLDLLRERII 352 (411)
T ss_pred HHHHHHHHHcCCCCCCEEEEEecccccCchh-hhhhhhhcC----CCeEEEEeccCcCHHHHHHHHH
Confidence 345677888777899999999999986653 111111111 1355666666555555444433
No 38
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.41 E-value=1.8e-12 Score=124.91 Aligned_cols=116 Identities=12% Similarity=0.176 Sum_probs=75.7
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhCCCCCceEEEeeccc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
.+.|+||||..+ ...+...|++.+|++|+|++..+.+... ...+..+....+.+.|+++|+||+|
T Consensus 51 ~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~D 117 (191)
T cd04112 51 KLQIWDTAGQER-------------FRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKAD 117 (191)
T ss_pred EEEEEeCCCcHH-------------HHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccc
Confidence 588999999533 2455678899999999999876532111 1223344455566789999999999
Q ss_pred CCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHHHHHhHh
Q 007263 215 LMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREYF 265 (610)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f 265 (610)
+..................+.+|+.+++.+..+++++...+.+...+..+.
T Consensus 118 l~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~ 168 (191)
T cd04112 118 MSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE 168 (191)
T ss_pred chhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 864321111111111223345799999998888888888887777766543
No 39
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.41 E-value=1.9e-12 Score=141.80 Aligned_cols=160 Identities=19% Similarity=0.286 Sum_probs=101.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..|.|+|||.+|+|||||+|+|+|..+ ..+...|
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~-----~~v~~~~----------------------------------------- 70 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRRE-----AVVEDVP----------------------------------------- 70 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCc-----ccccCCC-----------------------------------------
Confidence 579999999999999999999999754 2222222
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
|. +.+.+...+.. +...+.||||||+.... ..+...+...+..|++.+|++|+|++..+.. +...
T Consensus 71 ---gv----T~d~~~~~~~~-~~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~--s~~~ 135 (472)
T PRK03003 71 ---GV----TRDRVSYDAEW-NGRRFTVVDTGGWEPDA-----KGLQASVAEQAEVAMRTADAVLFVVDATVGA--TATD 135 (472)
T ss_pred ---CC----CEeeEEEEEEE-CCcEEEEEeCCCcCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEEECCCCC--CHHH
Confidence 11 11111111111 22358899999986421 2356677788889999999999999876532 2223
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCC-eeEeeeCChhhhhccccHHHHH
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
..++..+...+.|+++|+||+|+.....+..+. +.++.+ .+.+++....+++++...+...
T Consensus 136 ~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~-----~~~g~~~~~~iSA~~g~gi~eL~~~i~~~ 197 (472)
T PRK03003 136 EAVARVLRRSGKPVILAANKVDDERGEADAAAL-----WSLGLGEPHPVSALHGRGVGDLLDAVLAA 197 (472)
T ss_pred HHHHHHHHHcCCCEEEEEECccCCccchhhHHH-----HhcCCCCeEEEEcCCCCCcHHHHHHHHhh
Confidence 345555556689999999999986433222222 122222 3567777777777666555443
No 40
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.40 E-value=1.6e-12 Score=123.81 Aligned_cols=126 Identities=25% Similarity=0.415 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
...|.|+|+|.+|+|||||+|+|+|..+.+.- +..+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~----~~~~---------------------------------------- 51 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLART----SKTP---------------------------------------- 51 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccc----cCCC----------------------------------------
Confidence 37889999999999999999999997642221 1111
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcC---CCeEEEEeecCCCccc
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK---PNCIILAISPANQDLA 188 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~---~d~iil~v~~a~~d~~ 188 (610)
|.+. .+....+ + .++.++||||+.... .+......+..+...|++. .+++++++++.+ ...
T Consensus 52 ----~~t~----~~~~~~~--~--~~~~liDtpG~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~-~~~ 115 (179)
T TIGR03598 52 ----GRTQ----LINFFEV--N--DGFRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRH-PLK 115 (179)
T ss_pred ----Ccce----EEEEEEe--C--CcEEEEeCCCCcccc---CChhHHHHHHHHHHHHHHhChhhcEEEEEecCCC-CCC
Confidence 1100 0001111 1 268999999986532 2233445566777778764 468888887543 333
Q ss_pred cHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 189 TSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 189 ~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
.....+.+.+...+.|+++|+||+|+++.
T Consensus 116 -~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 116 -ELDLEMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred -HHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 33344556666678999999999999854
No 41
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.4e-11 Score=134.00 Aligned_cols=156 Identities=22% Similarity=0.336 Sum_probs=108.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
.+|+++|.||+||||++|+|+|.+ ..+.++|-+.. ++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~------q~VgNwpGvTV------------------------------------Ekk 41 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN------QKVGNWPGVTV------------------------------------EKK 41 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC------ceecCCCCeeE------------------------------------EEE
Confidence 469999999999999999999987 45555552222 111
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc--CCCeEEEEeecCCCccccHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~d~iil~v~~a~~d~~~~~~ 192 (610)
.| .+ .....++++||+||+.+-...+ .| +..+++|+. ++|+||-+||++| -...
T Consensus 42 eg----------~~---~~~~~~i~ivDLPG~YSL~~~S--~D-----E~Var~~ll~~~~D~ivnVvDAtn----LeRn 97 (653)
T COG0370 42 EG----------KL---KYKGHEIEIVDLPGTYSLTAYS--ED-----EKVARDFLLEGKPDLIVNVVDATN----LERN 97 (653)
T ss_pred EE----------EE---EecCceEEEEeCCCcCCCCCCC--ch-----HHHHHHHHhcCCCCEEEEEcccch----HHHH
Confidence 12 11 1123358999999998765442 22 666888974 6799999999887 4567
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHH
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
+.+.-++-+.|.|+++++|++|...+..-..+. +.....++.+.+.++....+++++++.....
T Consensus 98 LyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~-~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 98 LYLTLQLLELGIPMILALNMIDEAKKRGIRIDI-EKLSKLLGVPVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred HHHHHHHHHcCCCeEEEeccHhhHHhcCCcccH-HHHHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence 777777778899999999999987653211111 1124567788888888888887766665443
No 42
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.39 E-value=3.3e-12 Score=138.84 Aligned_cols=109 Identities=24% Similarity=0.329 Sum_probs=74.5
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
..+.+|||||+... ...+...+...+..+++.+|.+++|+++.. .. +.....+++.+...+.++++|+||+|.
T Consensus 47 ~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~-~~-~~~d~~i~~~l~~~~~piilVvNK~D~ 119 (429)
T TIGR03594 47 REFILIDTGGIEED-----DDGLDKQIREQAEIAIEEADVILFVVDGRE-GL-TPEDEEIAKWLRKSGKPVILVANKIDG 119 (429)
T ss_pred eEEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCCEEEEEEeCCC-CC-CHHHHHHHHHHHHhCCCEEEEEECccC
Confidence 35899999998642 233667788889999999999999998654 22 333444566665668999999999998
Q ss_pred CCCCCcHHHHHcCcccccCC-CeeEeeeCChhhhhccccHHH
Q 007263 216 MDKGTDAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 216 ~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~ 256 (610)
........+. ..++. .++.+++....+++++.+...
T Consensus 120 ~~~~~~~~~~-----~~lg~~~~~~vSa~~g~gv~~ll~~i~ 156 (429)
T TIGR03594 120 KKEDAVAAEF-----YSLGFGEPIPISAEHGRGIGDLLDAIL 156 (429)
T ss_pred CcccccHHHH-----HhcCCCCeEEEeCCcCCChHHHHHHHH
Confidence 7654333222 33444 467777777666665555443
No 43
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.39 E-value=2e-12 Score=120.48 Aligned_cols=152 Identities=20% Similarity=0.242 Sum_probs=86.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+++|.+|+|||||+|+++|..+.+......|....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------------------------------------- 38 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFL------------------------------------------- 38 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEE-------------------------------------------
Confidence 6899999999999999999998763221111111110
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-cccH-HHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-DAI 193 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~~~~-~~l 193 (610)
.. .+.+.+ ....+.++||||.... ..++..+++.+|++|+|++..+.. +... ..+
T Consensus 39 -------~~--~~~~~~-~~~~l~~~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~ 95 (161)
T cd01861 39 -------SK--TMYLED-KTVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWI 95 (161)
T ss_pred -------EE--EEEECC-EEEEEEEEECCCcHHH-------------HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHH
Confidence 00 111111 1125889999995432 567888999999999999876432 1111 111
Q ss_pred HHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 194 KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
.......+.+.|+++|+||+|+........+.........+..++.+++....+++++..
T Consensus 96 ~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 96 DDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred HHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence 122222233589999999999954332211111111222335566666665555544433
No 44
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.39 E-value=1.8e-12 Score=121.88 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=91.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+++|.+|+|||||++++++..|-+. ..+++..+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~-~~~t~~~~------------------------------------------ 39 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS-FISTIGID------------------------------------------ 39 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc-cccCccce------------------------------------------
Confidence 47899999999999999999999876211 11110000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
.....+.+. .....+.++||||..+. ..+...+++++|++|++++..+.+. -....
T Consensus 40 ---------~~~~~~~~~-~~~~~l~l~D~~g~~~~-------------~~~~~~~~~~ad~~i~v~d~~~~~s-~~~~~ 95 (167)
T cd01867 40 ---------FKIRTIELD-GKKIKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDEKS-FENIR 95 (167)
T ss_pred ---------EEEEEEEEC-CEEEEEEEEeCCchHHH-------------HHHHHHHhCCCCEEEEEEECcCHHH-HHhHH
Confidence 000011111 11236889999995432 4556788999999999998654321 11222
Q ss_pred HH---HHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 194 KI---SREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 194 ~l---~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
++ +....+.+.++++|.||+|+.+......+.........+.+|+.+++.+..++++....+
T Consensus 96 ~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 96 NWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 22 233345578999999999997543211111121222344567888877766665544433
No 45
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=3.9e-12 Score=138.47 Aligned_cols=157 Identities=24% Similarity=0.316 Sum_probs=98.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
.|.|++||.+|+|||||+|+|+|... ..+...|
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~-----~~v~~~~------------------------------------------ 33 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRD-----AIVADTP------------------------------------------ 33 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-----eeeCCCC------------------------------------------
Confidence 37899999999999999999999764 1111111
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
|.+...... .+.+ +...+.+|||||+.... .+....+...+..++..+|++|+|+++.+. . +....
T Consensus 34 --~~t~d~~~~--~~~~---~~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~vvd~~~~-~-~~~~~ 99 (435)
T PRK00093 34 --GVTRDRIYG--EAEW---LGREFILIDTGGIEPDD-----DGFEKQIREQAELAIEEADVILFVVDGRAG-L-TPADE 99 (435)
T ss_pred --CCcccceEE--EEEE---CCcEEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEEECCCC-C-CHHHH
Confidence 111100000 1111 22578999999997621 125666777788899999999999987542 2 22223
Q ss_pred HHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCC-eeEeeeCChhhhhccccHHH
Q 007263 194 KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~~ 256 (610)
.++..+...+.|+++|+||+|..+......+. ..++.+ ++.+++....+++++...+.
T Consensus 100 ~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~-----~~lg~~~~~~iSa~~g~gv~~l~~~I~ 158 (435)
T PRK00093 100 EIAKILRKSNKPVILVVNKVDGPDEEADAYEF-----YSLGLGEPYPISAEHGRGIGDLLDAIL 158 (435)
T ss_pred HHHHHHHHcCCcEEEEEECccCccchhhHHHH-----HhcCCCCCEEEEeeCCCCHHHHHHHHH
Confidence 34444444589999999999975432222222 233443 67777777666665554443
No 46
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.38 E-value=2.6e-12 Score=120.35 Aligned_cols=155 Identities=13% Similarity=0.159 Sum_probs=92.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|.+|+|||||++++++..+-+.....++..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~------------------------------------------- 39 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVE------------------------------------------- 39 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceE-------------------------------------------
Confidence 4689999999999999999999987622211111100
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~ 191 (610)
+ ....+.+.+ ....+.++||||.... ..+...|++.++++|++++..+..... ..
T Consensus 40 -------~--~~~~~~~~~-~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 96 (165)
T cd01868 40 -------F--ATRSIQIDG-KTIKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDITKKQTFENVER 96 (165)
T ss_pred -------E--EEEEEEECC-EEEEEEEEeCCChHHH-------------HHHHHHHHCCCCEEEEEEECcCHHHHHHHHH
Confidence 0 000111111 1135889999996432 556778899999999999876432211 11
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccH
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (610)
.+..++...+.+.++++|.||+|+........+.........+.+|+.+++.+..+++.....
T Consensus 97 ~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 159 (165)
T cd01868 97 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQ 159 (165)
T ss_pred HHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 222333444556899999999998754321111111111223457888888877666554443
No 47
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.37 E-value=3e-12 Score=120.08 Aligned_cols=107 Identities=14% Similarity=0.178 Sum_probs=64.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.++||||..+. ..+...+++.+|++++|++.++.+... .+.+.......+...++++|.||+
T Consensus 50 ~~~~l~Dt~g~~~~-------------~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 116 (165)
T cd01865 50 VKLQIWDTAGQERY-------------RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKC 116 (165)
T ss_pred EEEEEEECCChHHH-------------HHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECc
Confidence 35789999996442 456778899999999999876432111 112222333344568899999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
|+.+......+........++.+|+.+++.+..+++++...+
T Consensus 117 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 158 (165)
T cd01865 117 DMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERL 158 (165)
T ss_pred ccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 997543211111111112344567777777766666555443
No 48
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=1.4e-11 Score=134.25 Aligned_cols=128 Identities=21% Similarity=0.311 Sum_probs=82.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+|+|+|.+..+.+. .|
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-----~~----------------------------------------- 205 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD-----IA----------------------------------------- 205 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC-----CC-----------------------------------------
Confidence 46799999999999999999999976422221 11
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
|. +.+.+...+. .+...+.+|||||+.+..... ..+......-+..+++.+|++|+|+++.. .. +...
T Consensus 206 ---gt----t~~~~~~~~~-~~~~~~~lvDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~ilViD~~~-~~-~~~~ 273 (435)
T PRK00093 206 ---GT----TRDSIDTPFE-RDGQKYTLIDTAGIRRKGKVT--EGVEKYSVIRTLKAIERADVVLLVIDATE-GI-TEQD 273 (435)
T ss_pred ---Cc----eEEEEEEEEE-ECCeeEEEEECCCCCCCcchh--hHHHHHHHHHHHHHHHHCCEEEEEEeCCC-CC-CHHH
Confidence 10 0111111111 133468999999997643221 11221112234568899999999998754 23 3445
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..++..+...+.++++|+||+|+.+.
T Consensus 274 ~~i~~~~~~~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 274 LRIAGLALEAGRALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHHHHHcCCcEEEEEECccCCCH
Confidence 56777776678999999999999843
No 49
>PRK04213 GTP-binding protein; Provisional
Probab=99.37 E-value=5.7e-12 Score=122.30 Aligned_cols=124 Identities=23% Similarity=0.367 Sum_probs=75.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
..+.|+++|.+|+|||||+|+|+|..+ +.+.. .+|+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~---------------------------------------- 46 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKP---------------------------------------- 46 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCc----------------------------------------
Confidence 568999999999999999999999764 32211 111111
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc----CCCeEEEEeecCCCc-
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE----KPNCIILAISPANQD- 186 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~----~~d~iil~v~~a~~d- 186 (610)
..+.+ .++++|||||+...... ++...+.++.++..|+. .++.+++|+++....
T Consensus 47 --------------~~~~~-----~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~ 105 (201)
T PRK04213 47 --------------NHYDW-----GDFILTDLPGFGFMSGV--PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIE 105 (201)
T ss_pred --------------eEEee-----cceEEEeCCcccccccc--CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccc
Confidence 11111 16899999997543221 22234556666666654 356777787764321
Q ss_pred ----cc----cHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 187 ----LA----TSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 187 ----~~----~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
+. ......+...+...+.|.++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 106 IIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred cccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 10 111233344444457999999999998654
No 50
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.36 E-value=4.8e-12 Score=118.14 Aligned_cols=104 Identities=18% Similarity=0.241 Sum_probs=62.3
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH----HHHHHhCCCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI----KISREVDPTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l----~l~~~~~~~~~rti~Vlt 211 (610)
..+.++||||..+. ..+...|++.+|+++++++..+.... .... .+.+.....+.|+++|+|
T Consensus 50 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 50 AILDILDTAGQEEF-------------SAMREQYMRTGEGFLLVFSVTDRGSF-EEVDKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred EEEEEEECCCCcch-------------hHHHHHHHhhCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCCCCCCEEEEee
Confidence 35789999996543 55677889999999999987653211 1111 122333445789999999
Q ss_pred cccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
|+|+.+................+..|+.+++.+..++++...
T Consensus 116 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 157 (164)
T cd04145 116 KADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFH 157 (164)
T ss_pred CccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHH
Confidence 999875432111111111122344677777766666555443
No 51
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.36 E-value=1.3e-11 Score=113.91 Aligned_cols=99 Identities=20% Similarity=0.290 Sum_probs=59.2
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
..++++||||+...... .....-..+..++..+|++++++++.+. ......++... ..+.++++|+||+|+
T Consensus 49 ~~~~i~DtpG~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~v~d~~~~--~~~~~~~~~~~--~~~~~vi~v~nK~D~ 119 (157)
T cd04164 49 IPVRLIDTAGIRETEDE-----IEKIGIERAREAIEEADLVLFVIDASRG--LDEEDLEILEL--PADKPIIVVLNKSDL 119 (157)
T ss_pred EEEEEEECCCcCCCcch-----HHHHHHHHHHHHHhhCCEEEEEEECCCC--CCHHHHHHHHh--hcCCCEEEEEEchhc
Confidence 46899999998664321 2222223455677899999999887642 23333334433 447999999999999
Q ss_pred CCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhc
Q 007263 216 MDKGTDAADILEGKSYRLKFPWIGVVNRSQADINK 250 (610)
Q Consensus 216 ~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (610)
.+.... ........++.++.....+++.
T Consensus 120 ~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~ 147 (157)
T cd04164 120 LPDSEL-------LSLLAGKPIIAISAKTGEGLDE 147 (157)
T ss_pred CCcccc-------ccccCCCceEEEECCCCCCHHH
Confidence 865422 1122234566666554444433
No 52
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.36 E-value=6.1e-12 Score=118.42 Aligned_cols=155 Identities=14% Similarity=0.156 Sum_probs=91.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
+.+|+|||.+|+|||||++++++..+-+......+...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~------------------------------------------ 41 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF------------------------------------------ 41 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE------------------------------------------
Confidence 46899999999999999999999875222221111110
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
....+.+.+ ....++++||||..+ ...+...|++.+|++|+|++..+... -....
T Consensus 42 ----------~~~~~~~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~il~v~d~~~~~s-~~~~~ 96 (168)
T cd01866 42 ----------GARMITIDG-KQIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITRRET-FNHLT 96 (168)
T ss_pred ----------EEEEEEECC-EEEEEEEEECCCcHH-------------HHHHHHHHhccCCEEEEEEECCCHHH-HHHHH
Confidence 000111111 113588999999432 25567889999999999998764221 12233
Q ss_pred HHHHHh---CCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 194 KISREV---DPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 194 ~l~~~~---~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
.+...+ ...+.|+++|.||.|+..+...............+..|+.++..+..++++....+
T Consensus 97 ~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 97 SWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 333322 23468999999999987433211111111122334567777777766666554433
No 53
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.36 E-value=5.2e-12 Score=136.31 Aligned_cols=161 Identities=22% Similarity=0.252 Sum_probs=89.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
-+..|++||.+|||||||||+|++...-......+|+.|..-.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGv------------------------------------- 200 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGV------------------------------------- 200 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEE-------------------------------------
Confidence 4678999999999999999999987521111112333331111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC----ccc
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ----DLA 188 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~----d~~ 188 (610)
+.. ....++|+||||+...+..+ ..+......+++++|+||+|++.++. +..
T Consensus 201 -----------------v~~-~~~~f~laDtPGliegas~g------~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~ 256 (500)
T PRK12296 201 -----------------VQA-GDTRFTVADVPGLIPGASEG------KGLGLDFLRHIERCAVLVHVVDCATLEPGRDPL 256 (500)
T ss_pred -----------------EEE-CCeEEEEEECCCCccccchh------hHHHHHHHHHHHhcCEEEEEECCcccccccCch
Confidence 111 22368999999997643221 11222245678899999999987642 111
Q ss_pred cH-HHH--HHHHHh----------CCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 189 TS-DAI--KISREV----------DPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 189 ~~-~~l--~l~~~~----------~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
.. +.+ ++.... ...+.|.|+|+||+|+.+.. +..+.+.......+..++.+++.+..+++.+...+
T Consensus 257 ~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~-el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L 335 (500)
T PRK12296 257 SDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR-ELAEFVRPELEARGWPVFEVSAASREGLRELSFAL 335 (500)
T ss_pred hhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH-HHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 11 111 122211 12468999999999986432 22222221111123345666666555555544443
No 54
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.35 E-value=5.2e-12 Score=131.29 Aligned_cols=159 Identities=20% Similarity=0.272 Sum_probs=89.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
-++.|++||.+|||||||||+|++...-......+|+.|+.-.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~------------------------------------- 198 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGV------------------------------------- 198 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEE-------------------------------------
Confidence 4578999999999999999999986521111123344442211
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-cHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TSD 191 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~~~ 191 (610)
+...+...++|+||||+......+ ..+.....++++.++.+++|++.++.+.. ..+
T Consensus 199 -----------------v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad~ll~VvD~s~~~~~~~~e 255 (329)
T TIGR02729 199 -----------------VRVDDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIE 255 (329)
T ss_pred -----------------EEeCCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhCEEEEEEcCccccccCHHH
Confidence 111122468999999997643321 11233445667889999999987654211 111
Q ss_pred HH-HH---HHHhCC--CCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 192 AI-KI---SREVDP--TGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 192 ~l-~l---~~~~~~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
.+ .+ +..+++ ...|.++|+||+|+.+.. ...+..+.....++..++.++.....+++++.
T Consensus 256 ~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~ 321 (329)
T TIGR02729 256 DYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-ELAELLKELKKALGKPVFPISALTGEGLDELL 321 (329)
T ss_pred HHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH-HHHHHHHHHHHHcCCcEEEEEccCCcCHHHHH
Confidence 11 12 222332 368999999999997542 22222221111223345566655555544433
No 55
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.35 E-value=3e-12 Score=118.32 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=52.3
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
..+.++||||+..... .....+...+..++..+|.+++++++..... .....+.+.+...+.|+++|+||+|+
T Consensus 45 ~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~--~~~~~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 45 REFILIDTGGIEPDDE-----GISKEIREQAELAIEEADVILFVVDGREGLT--PADEEIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred eEEEEEECCCCCCchh-----HHHHHHHHHHHHHHHhCCEEEEEEeccccCC--ccHHHHHHHHHhcCCCEEEEEECccc
Confidence 4689999999976422 2344455556778899999999998654221 22223444444457999999999999
Q ss_pred CCCC
Q 007263 216 MDKG 219 (610)
Q Consensus 216 ~~~~ 219 (610)
....
T Consensus 118 ~~~~ 121 (157)
T cd01894 118 IKEE 121 (157)
T ss_pred CChH
Confidence 7543
No 56
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.35 E-value=7.3e-12 Score=133.56 Aligned_cols=120 Identities=26% Similarity=0.367 Sum_probs=73.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcc--cccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPR--GSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~--~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
++.|++||.+|||||||||+|++.. |. ....+|..|..
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~Pnl-------------------------------------- 197 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNL-------------------------------------- 197 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEE--------------------------------------
Confidence 4589999999999999999999875 22 11123333311
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC---ccc
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ---DLA 188 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~---d~~ 188 (610)
| . +..++...++|+||||+...+..+ ..+......++++++++|+|++.++. +..
T Consensus 198 ----G----------~--v~~~~~~~~~laD~PGliega~~~------~gLg~~fLrhier~~llI~VID~s~~~~~dp~ 255 (424)
T PRK12297 198 ----G----------V--VETDDGRSFVMADIPGLIEGASEG------VGLGHQFLRHIERTRVIVHVIDMSGSEGRDPI 255 (424)
T ss_pred ----E----------E--EEEeCCceEEEEECCCCccccccc------chHHHHHHHHHhhCCEEEEEEeCCccccCChH
Confidence 1 0 111123469999999997643321 11122234557789999999987653 211
Q ss_pred cHHHHHH---HHHhCC--CCCceEEEeecccCC
Q 007263 189 TSDAIKI---SREVDP--TGERTFGVLTKIDLM 216 (610)
Q Consensus 189 ~~~~l~l---~~~~~~--~~~rti~VltK~D~~ 216 (610)
.+...+ +...++ .+.|.++|+||+|+.
T Consensus 256 -e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 256 -EDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred -HHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 111222 233333 368999999999974
No 57
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.35 E-value=1.1e-11 Score=114.06 Aligned_cols=107 Identities=22% Similarity=0.338 Sum_probs=64.3
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
..+++++||||+....... ......+..++..+|.+++++++......... .+.......+.++++|+||+|
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~------~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~--~~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLG------REREELARRVLERADLILFVVDADLRADEEEE--KLLELLRERGKPVLLVLNKID 115 (163)
T ss_pred CCcEEEEECCCCCccccch------hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH--HHHHHHHhcCCeEEEEEEccc
Confidence 4689999999997754321 11124567788999999999987764332222 234444445799999999999
Q ss_pred CCCCCCcHHHH---HcCcccccCCCeeEeeeCChhhhh
Q 007263 215 LMDKGTDAADI---LEGKSYRLKFPWIGVVNRSQADIN 249 (610)
Q Consensus 215 ~~~~~~~~~~~---l~~~~~~l~~g~~~v~~~s~~~~~ 249 (610)
+.......... ...........++.+.+....+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~ 153 (163)
T cd00880 116 LLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGID 153 (163)
T ss_pred cCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHH
Confidence 98654322111 111122233456666655544443
No 58
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.34 E-value=1.7e-11 Score=140.58 Aligned_cols=127 Identities=20% Similarity=0.307 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|+++|.+|+|||||+|+|+|..+ ..++..|
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~-----~~v~~~~----------------------------------------- 482 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEER-----AVVNDLA----------------------------------------- 482 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc-----cccCCCC-----------------------------------------
Confidence 568999999999999999999999875 2222222
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHH-HHHHHhcCCCeEEEEeecCCCccccHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIEN-MVRSYIEKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~-~~~~yi~~~d~iil~v~~a~~d~~~~~ 191 (610)
|.+...... .+.+ +..+++||||||+.+..... ...+.... ....+++.+|++|+|+++... . +..
T Consensus 483 ---gtT~d~~~~--~~~~---~~~~~~liDTaG~~~~~~~~---~~~e~~~~~r~~~~i~~advvilViDat~~-~-s~~ 549 (712)
T PRK09518 483 ---GTTRDPVDE--IVEI---DGEDWLFIDTAGIKRRQHKL---TGAEYYSSLRTQAAIERSELALFLFDASQP-I-SEQ 549 (712)
T ss_pred ---CCCcCccee--EEEE---CCCEEEEEECCCcccCcccc---hhHHHHHHHHHHHHhhcCCEEEEEEECCCC-C-CHH
Confidence 111111111 1111 23468899999986532211 01112222 235678999999999986542 2 334
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
...++..+...+.++++|+||+|+.+.
T Consensus 550 ~~~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 550 DLKVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 455666666678999999999999754
No 59
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.34 E-value=7.8e-12 Score=116.89 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=62.3
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-c-HHHH-HHHHHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-SDAI-KISREVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~-~~~l-~l~~~~~~~~~rti~VltK 212 (610)
..+.++||||..+. ..+...|++.+|++++|++..+.... . .... .+.+.....+.|+++|.||
T Consensus 48 ~~l~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK 114 (164)
T smart00173 48 CLLDILDTAGQEEF-------------SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNK 114 (164)
T ss_pred EEEEEEECCCcccc-------------hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 35789999997553 45667889999999999986542211 0 1111 1222233346899999999
Q ss_pred ccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccH
Q 007263 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (610)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (610)
+|+.+......+.........+.+|+.+++.+..++++....
T Consensus 115 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 156 (164)
T smart00173 115 CDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYD 156 (164)
T ss_pred ccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHH
Confidence 998754321111111111223356777777776666554443
No 60
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.34 E-value=6.5e-12 Score=117.81 Aligned_cols=105 Identities=15% Similarity=0.212 Sum_probs=64.4
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHH---HHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI---SREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l---~~~~~~~~~rti~VltK~ 213 (610)
.+.++||||..+. ..+...|++.+|++|+|++..+.+. -.....+ .+.....+.+.++|.||+
T Consensus 52 ~~~i~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~s-~~~l~~~~~~~~~~~~~~~~~iiv~nK~ 117 (166)
T cd01869 52 KLQIWDTAGQERF-------------RTITSSYYRGAHGIIIVYDVTDQES-FNNVKQWLQEIDRYASENVNKLLVGNKC 117 (166)
T ss_pred EEEEEECCCcHhH-------------HHHHHHHhCcCCEEEEEEECcCHHH-HHhHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 5789999995432 5567788999999999998765321 1112222 223333468999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
|+.....-..+.........+.+|+.+++....++++....+
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 118 DLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred hcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence 986543211111111222334567888887777666555443
No 61
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.34 E-value=5.4e-12 Score=118.02 Aligned_cols=152 Identities=14% Similarity=0.206 Sum_probs=87.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+|+|++++|||||++++++..+.+.. .|+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~------~~t------------------------------------------- 32 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKY------LPT------------------------------------------- 32 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC------CCc-------------------------------------------
Confidence 6899999999999999999998762211 110
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAI 193 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l 193 (610)
.++......+.+.+ ....+.|+||||.... ..+...|++.+|++|+|++..+.+... ...+
T Consensus 33 ---~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~ 95 (168)
T cd04119 33 ---IGIDYGVKKVSVRN-KEVRVNFFDLSGHPEY-------------LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWL 95 (168)
T ss_pred ---cceeEEEEEEEECC-eEEEEEEEECCccHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHH
Confidence 00000001111111 2246889999997432 456677899999999999876532111 1111
Q ss_pred H-HHHHhCC----CCCceEEEeecccCCCCCC-cHHHHHcCcccccCCCeeEeeeCChhhhhccccH
Q 007263 194 K-ISREVDP----TGERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (610)
Q Consensus 194 ~-l~~~~~~----~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (610)
. +.+...+ .+.|+++|.||+|+..+.. ...+. .......+..|+.+++.+..++++....
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 161 (168)
T cd04119 96 KEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEG-RLWAESKGFKYFETSACTGEGVNEMFQT 161 (168)
T ss_pred HHHHHhccccccCCCceEEEEEEchhcccccccCHHHH-HHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 1 2222222 4689999999999874321 11111 0011122345777777776665554443
No 62
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.34 E-value=6.9e-12 Score=116.23 Aligned_cols=105 Identities=21% Similarity=0.303 Sum_probs=61.7
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc--CCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
.++.+|||||+...... +. . ..+...|+. .+|++|+++++...+ . ...+...+...+.+.++|+||+
T Consensus 43 ~~~~liDtpG~~~~~~~--~~--~---~~~~~~~~~~~~~d~vi~v~d~~~~~--~--~~~~~~~~~~~~~~~iiv~NK~ 111 (158)
T cd01879 43 KEIEIVDLPGTYSLSPY--SE--D---EKVARDFLLGEKPDLIVNVVDATNLE--R--NLYLTLQLLELGLPVVVALNMI 111 (158)
T ss_pred eEEEEEECCCccccCCC--Ch--h---HHHHHHHhcCCCCcEEEEEeeCCcch--h--HHHHHHHHHHcCCCEEEEEehh
Confidence 46899999998664322 11 1 344566664 899999999865421 1 2233334444578999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
|+.+....... .......++..++.++.....+++.+.
T Consensus 112 Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 112 DEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred hhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHH
Confidence 99754321111 111112234566777776665555443
No 63
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.34 E-value=7.7e-12 Score=116.61 Aligned_cols=102 Identities=22% Similarity=0.238 Sum_probs=58.0
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-cccHHHHHHHHHhCCCCCceEEEeecc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~~~~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
...+.+|||||..+. ......++..+|++++|++..+.. ....+.+.+++... ..++++|+||+
T Consensus 50 ~~~~~~~DtpG~~~~-------------~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK~ 114 (164)
T cd04171 50 GKRLGFIDVPGHEKF-------------IKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLG--IKRGLVVLTKA 114 (164)
T ss_pred CcEEEEEECCChHHH-------------HHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhC--CCcEEEEEECc
Confidence 347899999996331 234556788999999999865421 11122233333221 24899999999
Q ss_pred cCCCCCC------cHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 214 DLMDKGT------DAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 214 D~~~~~~------~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
|+..... +..+.+.... .....++.+++.+..+++++.
T Consensus 115 Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~ 158 (164)
T cd04171 115 DLVDEDWLELVEEEIRELLAGTF-LADAPIFPVSAVTGEGIEELK 158 (164)
T ss_pred cccCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEeCCCCcCHHHHH
Confidence 9975421 1112222110 023457777776666555443
No 64
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.33 E-value=6.9e-12 Score=119.10 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=47.6
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
...+.|+||||..+. ..++..|+..+|++|+|++..+.. ....+..+..+...+.++++|+||+|
T Consensus 66 ~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~v~D~~~~~--~~~~~~~~~~~~~~~~~iiiv~NK~D 130 (179)
T cd01890 66 EYLLNLIDTPGHVDF-------------SYEVSRSLAACEGALLLVDATQGV--EAQTLANFYLALENNLEIIPVINKID 130 (179)
T ss_pred cEEEEEEECCCChhh-------------HHHHHHHHHhcCeEEEEEECCCCc--cHhhHHHHHHHHHcCCCEEEEEECCC
Confidence 345889999998653 456778899999999999876421 12222222333345789999999999
Q ss_pred CCC
Q 007263 215 LMD 217 (610)
Q Consensus 215 ~~~ 217 (610)
+.+
T Consensus 131 l~~ 133 (179)
T cd01890 131 LPS 133 (179)
T ss_pred CCc
Confidence 864
No 65
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.33 E-value=1.7e-11 Score=140.15 Aligned_cols=161 Identities=22% Similarity=0.280 Sum_probs=100.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+++|.+|+|||||+|+|+|.+. .+.+.|
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~------~vgn~p------------------------------------------ 34 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ------RVGNWA------------------------------------------ 34 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC------ccCCCC------------------------------------------
Confidence 35899999999999999999999763 122222
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHh--cCCCeEEEEeecCCCccccHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~d~iil~v~~a~~d~~~~~ 191 (610)
|.+. +...-.+ ..+...+.+|||||+.+......+.+.. +.++..|+ ..+|++|+|+++.+. ..
T Consensus 35 --GvTv----e~k~g~~-~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~~~l~~~~aD~vI~VvDat~l----er 100 (772)
T PRK09554 35 --GVTV----ERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLINVVDASNL----ER 100 (772)
T ss_pred --CceE----eeEEEEE-EcCceEEEEEECCCccccccccccccHH---HHHHHHHHhccCCCEEEEEecCCcc----hh
Confidence 1111 0011111 2233468999999998754321112222 23355664 489999999987652 22
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHH
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
.+.+..++...+.|+++|+||+|..++.....+ ++.....++.+++.++.+..+++++.......
T Consensus 101 ~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id-~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~ 165 (772)
T PRK09554 101 NLYLTLQLLELGIPCIVALNMLDIAEKQNIRID-IDALSARLGCPVIPLVSTRGRGIEALKLAIDR 165 (772)
T ss_pred hHHHHHHHHHcCCCEEEEEEchhhhhccCcHHH-HHHHHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence 344555666678999999999998754322111 12223456677888888888777766665543
No 66
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.33 E-value=3.8e-12 Score=124.56 Aligned_cols=150 Identities=23% Similarity=0.302 Sum_probs=85.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc--ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
+|+|+|..||||||++|+|+|.+.++.+.+ .||..+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~-------------------------------------- 43 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYS-------------------------------------- 43 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEE--------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceee--------------------------------------
Confidence 699999999999999999999998887642 3454431111
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
+ .-+...+++|||||+.+.... ++++...+.+.+......++++|||+............+
T Consensus 44 --~---------------~~~g~~v~VIDTPGl~d~~~~--~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l 104 (212)
T PF04548_consen 44 --G---------------EVDGRQVTVIDTPGLFDSDGS--DEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVL 104 (212)
T ss_dssp --E---------------EETTEEEEEEE--SSEETTEE--HHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHH
T ss_pred --e---------------eecceEEEEEeCCCCCCCccc--HHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHH
Confidence 0 012346899999999775432 222333344433444567899988876542222233444
Q ss_pred HHHHHhCC--CCCceEEEeecccCCCCCCcHHHHHc--------CcccccCCCeeEeeeC
Q 007263 194 KISREVDP--TGERTFGVLTKIDLMDKGTDAADILE--------GKSYRLKFPWIGVVNR 243 (610)
Q Consensus 194 ~l~~~~~~--~~~rti~VltK~D~~~~~~~~~~~l~--------~~~~~l~~g~~~v~~~ 243 (610)
+....+-+ .-.++|+|+|..|...+.. ..+.++ ......+..|+.+.+.
T Consensus 105 ~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-~~~~l~~~~~~~l~~li~~c~~R~~~f~n~ 163 (212)
T PF04548_consen 105 ELLQEIFGEEIWKHTIVVFTHADELEDDS-LEDYLKKESNEALQELIEKCGGRYHVFNNK 163 (212)
T ss_dssp HHHHHHHCGGGGGGEEEEEEEGGGGTTTT-HHHHHHHHHHHHHHHHHHHTTTCEEECCTT
T ss_pred HHHHHHccHHHHhHhhHHhhhcccccccc-HHHHHhccCchhHhHHhhhcCCEEEEEecc
Confidence 44444322 2478999999999887654 333332 2234455566666665
No 67
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.2e-11 Score=128.87 Aligned_cols=172 Identities=19% Similarity=0.253 Sum_probs=116.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+-..|++.|+.|+||||++||++..++||.|.|+||.|-.++- ..+|.+.+....+. ..-.|...+...+.....
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Ve---gadG~e~vl~~~~s--~ek~d~~ti~~~~haL~~ 182 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVE---GADGAEAVLATEGS--EEKIDMKTINQLAHALKP 182 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeec---ccCCcceeeccCCC--cccccHHHHhHHHHhcCc
Confidence 5678999999999999999999999999999999999987764 22333333322221 122233333322211111
Q ss_pred hhcCCCCccccccEEEEEecCCC------CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc
Q 007263 113 RETGRTKQISSVPIHLSIYSPNV------VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD 186 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~------~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d 186 (610)
.. . ....--+.|+.|+. .++.+||.||+.-.+.. ...+.++..++|++|||+.+.|+
T Consensus 183 ~~-----~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~----------tswid~~cldaDVfVlV~NaEnt- 245 (749)
T KOG0448|consen 183 DK-----D-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSEL----------TSWIDSFCLDADVFVLVVNAENT- 245 (749)
T ss_pred cc-----c-cCcceEEEEEecCccchhhhccceeccCCCCCCchhh----------hHHHHHHhhcCCeEEEEecCccH-
Confidence 00 0 11223355666654 37999999999765433 67788999999999999987653
Q ss_pred cccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHc
Q 007263 187 LATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILE 227 (610)
Q Consensus 187 ~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (610)
.+..+.++.+.+......++++.||+|....+.++.+.+.
T Consensus 246 -lt~sek~Ff~~vs~~KpniFIlnnkwDasase~ec~e~V~ 285 (749)
T KOG0448|consen 246 -LTLSEKQFFHKVSEEKPNIFILNNKWDASASEPECKEDVL 285 (749)
T ss_pred -hHHHHHHHHHHhhccCCcEEEEechhhhhcccHHHHHHHH
Confidence 3456667788777766777888889999887766654443
No 68
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.33 E-value=9.6e-12 Score=118.82 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=48.9
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
...++||||||..+. ......++..+|++++++++.... ......+.......+.++++|+||+|
T Consensus 61 ~~~~~liDtpG~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~i~iv~nK~D 125 (189)
T cd00881 61 DRRVNFIDTPGHEDF-------------SSEVIRGLSVSDGAILVVDANEGV--QPQTREHLRIAREGGLPIIVAINKID 125 (189)
T ss_pred CEEEEEEeCCCcHHH-------------HHHHHHHHHhcCEEEEEEECCCCC--cHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 457999999997542 455777888999999999865422 22223333334446799999999999
Q ss_pred CCCC
Q 007263 215 LMDK 218 (610)
Q Consensus 215 ~~~~ 218 (610)
+..+
T Consensus 126 ~~~~ 129 (189)
T cd00881 126 RVGE 129 (189)
T ss_pred Ccch
Confidence 9863
No 69
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.33 E-value=1.1e-11 Score=119.97 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=89.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+|+|++|+|||||++++++.+| |....+++......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~----------------------------------------- 39 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYR----------------------------------------- 39 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCccccccce-----------------------------------------
Confidence 689999999999999999998875 33221111111000
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l 195 (610)
. .+.+ +.....+.|+||||....+.. ...........+++.+|++|+|++..+.+.. .....+
T Consensus 40 --------~--~i~~-~~~~~~l~i~Dt~G~~~~~~~-----~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~-~~~~~~ 102 (198)
T cd04142 40 --------P--AVVL-SGRVYDLHILDVPNMQRYPGT-----AGQEWMDPRFRGLRNSRAFILVYDICSPDSF-HYVKLL 102 (198)
T ss_pred --------e--EEEE-CCEEEEEEEEeCCCcccCCcc-----chhHHHHHHHhhhccCCEEEEEEECCCHHHH-HHHHHH
Confidence 0 0111 111235789999998654311 1122233455678999999999987653211 111112
Q ss_pred H---HHh---CCCCCceEEEeecccCCCCCCcHHHHHcCc-ccccCCCeeEeeeCChhhhhcccc
Q 007263 196 S---REV---DPTGERTFGVLTKIDLMDKGTDAADILEGK-SYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 196 ~---~~~---~~~~~rti~VltK~D~~~~~~~~~~~l~~~-~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
. ... .+.+.|+++|.||+|+........+.+... ....+.+|+.+++.+..+++.++.
T Consensus 103 ~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~ 167 (198)
T cd04142 103 RQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFK 167 (198)
T ss_pred HHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHH
Confidence 2 222 245789999999999965322111111111 112346788888877766655443
No 70
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.33 E-value=8.3e-12 Score=116.38 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=90.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+|+|++++|||||+++|++..+-+......+...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~-------------------------------------------- 37 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEF-------------------------------------------- 37 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeE--------------------------------------------
Confidence 689999999999999999998775222211111000
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l 195 (610)
....+.+. .....+.|+||||.... ..+...+++.+|++|+|++..+.... .....+
T Consensus 38 --------~~~~~~~~-~~~~~l~l~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~ 94 (161)
T cd04113 38 --------GSKIIRVG-GKRVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITNRTSF-EALPTW 94 (161)
T ss_pred --------EEEEEEEC-CEEEEEEEEECcchHHH-------------HHhHHHHhcCCCEEEEEEECCCHHHH-HHHHHH
Confidence 00011111 11235789999996432 45677889999999999987653321 122222
Q ss_pred ---HHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 196 ---SREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 196 ---~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
.+.....+.++++|.||+|+........+.........+..|+.+++.+..++++...
T Consensus 95 ~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 155 (161)
T cd04113 95 LSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFL 155 (161)
T ss_pred HHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 2333445789999999999975432111111111223346678888777666655443
No 71
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=7.6e-11 Score=122.93 Aligned_cols=145 Identities=28% Similarity=0.351 Sum_probs=95.4
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeecc
Q 007263 12 QRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLH 91 (610)
Q Consensus 12 q~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~ 91 (610)
+++.+.+........+ ..-++|+++|.||+|||||||+|+..+. .+|+..|
T Consensus 250 d~v~s~l~~~~~~e~l----q~gl~iaIvGrPNvGKSSLlNaL~~~dr-----sIVSpv~-------------------- 300 (531)
T KOG1191|consen 250 DDVLSHLNKADEIERL----QSGLQIAIVGRPNVGKSSLLNALSREDR-----SIVSPVP-------------------- 300 (531)
T ss_pred HHHHHHHHhhhhHHHh----hcCCeEEEEcCCCCCHHHHHHHHhcCCc-----eEeCCCC--------------------
Confidence 3466555543322333 2558999999999999999999999988 7887777
Q ss_pred CCCcccCChHHHHHHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc
Q 007263 92 IPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE 171 (610)
Q Consensus 92 ~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~ 171 (610)
|.+ .+.|...+. ++...+.|+||.|+-..... .++..--+-+++.++
T Consensus 301 ------------------------GTT----RDaiea~v~-~~G~~v~L~DTAGiRe~~~~----~iE~~gI~rA~k~~~ 347 (531)
T KOG1191|consen 301 ------------------------GTT----RDAIEAQVT-VNGVPVRLSDTAGIREESND----GIEALGIERARKRIE 347 (531)
T ss_pred ------------------------Ccc----hhhheeEee-cCCeEEEEEeccccccccCC----hhHHHhHHHHHHHHh
Confidence 433 233334333 56778999999999872211 133333344778899
Q ss_pred CCCeEEEEeecCCCccccHHHHHHHHHhCC------------CCCceEEEeecccCCCCCC
Q 007263 172 KPNCIILAISPANQDLATSDAIKISREVDP------------TGERTFGVLTKIDLMDKGT 220 (610)
Q Consensus 172 ~~d~iil~v~~a~~d~~~~~~l~l~~~~~~------------~~~rti~VltK~D~~~~~~ 220 (610)
.+|.|++++++...+.+ ..+.+++.+.. ...|.|.|.||.|+..+..
T Consensus 348 ~advi~~vvda~~~~t~--sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~ 406 (531)
T KOG1191|consen 348 RADVILLVVDAEESDTE--SDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP 406 (531)
T ss_pred hcCEEEEEecccccccc--cchHHHHHHHHhccceEEEeccccccceEEEechhhccCccc
Confidence 99999999987443332 22233332221 1278899999999987643
No 72
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.32 E-value=8.6e-12 Score=116.30 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=61.2
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHH---HHH-hCCCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI---SRE-VDPTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l---~~~-~~~~~~rti~Vlt 211 (610)
..+.|+||||..+. ..+...|++.+|++++|++..+.+.. .....+ +.. ....+.|.++|.|
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~piilv~n 114 (163)
T cd04136 49 CMLEILDTAGTEQF-------------TAMRDLYIKNGQGFVLVYSITSQSSF-NDLQDLREQILRVKDTENVPMVLVGN 114 (163)
T ss_pred EEEEEEECCCcccc-------------chHHHHHhhcCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 35789999997543 45667889999999999986643211 112222 222 2334689999999
Q ss_pred cccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
|+|+.+......+.........+.+|+.+++++..++++...
T Consensus 115 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 115 KCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred CccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 999865332111111111112235677777776666555443
No 73
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.32 E-value=8.6e-12 Score=117.43 Aligned_cols=107 Identities=15% Similarity=0.240 Sum_probs=61.7
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-ccHHH-H-HHHHHhC---CCCCceEEEe
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDA-I-KISREVD---PTGERTFGVL 210 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~~~~-l-~l~~~~~---~~~~rti~Vl 210 (610)
.+.++|+||.... ..+...|++++|++|++++..+... ..... . .+..... +.+.|+++|+
T Consensus 50 ~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 116 (172)
T cd01862 50 TLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLG 116 (172)
T ss_pred EEEEEeCCChHHH-------------HhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEE
Confidence 5789999996432 4566788999999999998654321 11111 1 1233333 3478999999
Q ss_pred ecccCCCCCCcHHHHHcCcccccC-CCeeEeeeCChhhhhccccHHH
Q 007263 211 TKIDLMDKGTDAADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 211 tK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
||+|+..+.....+.+.......+ ..++.+++....+++.....+.
T Consensus 117 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 163 (172)
T cd01862 117 NKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIA 163 (172)
T ss_pred ECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHH
Confidence 999998432211111111111122 4677777776666655554433
No 74
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.32 E-value=1.1e-11 Score=115.72 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=60.8
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHH---hCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISRE---VDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~---~~~~~~rti~VltK~ 213 (610)
.+.++|+||.... ..+...+++.+|++|+++++.+... ......+... ....+.|+++|.||+
T Consensus 50 ~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s-~~~~~~~l~~~~~~~~~~~pivvv~nK~ 115 (164)
T smart00175 50 KLQIWDTAGQERF-------------RSITSSYYRGAVGALLVYDITNRES-FENLKNWLKELREYADPNVVIMLVGNKS 115 (164)
T ss_pred EEEEEECCChHHH-------------HHHHHHHhCCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEEch
Confidence 5789999995332 4567888999999999998765321 1222223222 222478999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
|+........+.........+..|+.++.....++++....+
T Consensus 116 D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i 157 (164)
T smart00175 116 DLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEEL 157 (164)
T ss_pred hcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 987532111111111112233456666666555555444433
No 75
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.31 E-value=1.6e-11 Score=115.19 Aligned_cols=103 Identities=12% Similarity=0.152 Sum_probs=62.5
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhCCCCCceEEEeeccc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
.+.++||||.... ..+...|++.+|++|+|++..+..... ...+...+.....+.++++|.||+|
T Consensus 52 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~D 118 (166)
T cd04122 52 KLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKAD 118 (166)
T ss_pred EEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 5789999996432 556788999999999999876532111 1122222333344688999999999
Q ss_pred CCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 215 LMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
+........+.........+..|+.+++.+..++++..
T Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 119 LEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAF 156 (166)
T ss_pred cccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 97543211111111112234567777777766665544
No 76
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.31 E-value=1.4e-11 Score=114.51 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=61.9
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HH-HHHHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DA-IKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~-l~l~~~~~~~~~rti~VltK~ 213 (610)
.+.++||||..+. ..+...|++.+|+++++++..+...... .. ..+.+.....+.|+++|.||+
T Consensus 50 ~~~i~Dt~G~~~~-------------~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~ 116 (162)
T cd04138 50 LLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKC 116 (162)
T ss_pred EEEEEECCCCcch-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 4778999996442 5677789999999999987654321111 11 122333334578999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
|+........+ .......++..|+.+++.+..++++...
T Consensus 117 Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 117 DLAARTVSSRQ-GQDLAKSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ccccceecHHH-HHHHHHHhCCeEEEecCCCCCCHHHHHH
Confidence 98753221111 1111122344677777777666665443
No 77
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.31 E-value=2.3e-11 Score=116.36 Aligned_cols=115 Identities=23% Similarity=0.354 Sum_probs=73.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+++|.+|+|||||++++++..+.+ ..|+
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~~-------~~~t------------------------------------------- 34 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFVN-------TVPT------------------------------------------- 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCC-------cCCc-------------------------------------------
Confidence 69999999999999999999876521 0121
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH--
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI-- 193 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l-- 193 (610)
.++....+.+.+.......+.++||||..+. ..+...|++.+|++|+++++.+.+.. ....
T Consensus 35 ---~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~~~-~~~~~~ 97 (183)
T cd04152 35 ---KGFNTEKIKVSLGNSKGITFHFWDVGGQEKL-------------RPLWKSYTRCTDGIVFVVDSVDVERM-EEAKTE 97 (183)
T ss_pred ---cccceeEEEeeccCCCceEEEEEECCCcHhH-------------HHHHHHHhccCCEEEEEEECCCHHHH-HHHHHH
Confidence 0011111122121223346899999996432 55677889999999999987653211 1111
Q ss_pred --HHHHHhCCCCCceEEEeecccCCC
Q 007263 194 --KISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 194 --~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
.+.+.....+.|+++|+||+|+..
T Consensus 98 ~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 98 LHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHhhhhcCCCcEEEEEECcCccc
Confidence 122222335789999999999864
No 78
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.31 E-value=1.6e-11 Score=114.69 Aligned_cols=104 Identities=19% Similarity=0.203 Sum_probs=60.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.++||||... ...+...+++++|+++++++..+.+... ...+....... .+.+.++|+||+
T Consensus 52 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~ 117 (164)
T cd04101 52 VELFIFDSAGQEL-------------YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKM 117 (164)
T ss_pred EEEEEEECCCHHH-------------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECc
Confidence 4688999999533 2567788999999999999876432211 11112222222 358999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
|+.+................+..|+.+++....+++....
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 157 (164)
T cd04101 118 DLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFE 157 (164)
T ss_pred ccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHH
Confidence 9865432111111111222334566776666555554443
No 79
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.31 E-value=1.6e-11 Score=140.79 Aligned_cols=161 Identities=19% Similarity=0.239 Sum_probs=104.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.+|.|+++|.+|+|||||+|+|+|..+ .++...|.+.+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-----~iv~~~pGvT~------------------------------------- 311 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE-----AVVEDTPGVTR------------------------------------- 311 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCCCeeE-------------------------------------
Confidence 568999999999999999999999764 33333331111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+.+..... .+..++.+|||||+... .+++...+.+.+..+++.+|++|+|++... .+ +...
T Consensus 312 -----------d~~~~~~~-~~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~-~~-~~~d 372 (712)
T PRK09518 312 -----------DRVSYDAE-WAGTDFKLVDTGGWEAD-----VEGIDSAIASQAQIAVSLADAVVFVVDGQV-GL-TSTD 372 (712)
T ss_pred -----------EEEEEEEE-ECCEEEEEEeCCCcCCC-----CccHHHHHHHHHHHHHHhCCEEEEEEECCC-CC-CHHH
Confidence 11111111 12346889999998642 233667777888899999999999998654 22 2333
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCC-eeEeeeCChhhhhccccHHHHHH
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKNVDMIAARR 259 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~~~~~ 259 (610)
..++..+...+.|+|+|+||+|+........+.. .++.+ .+.+++....+++++...+....
T Consensus 373 ~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~-----~lg~~~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 373 ERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFW-----KLGLGEPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred HHHHHHHHhcCCCEEEEEECcccccchhhHHHHH-----HcCCCCeEEEECCCCCCchHHHHHHHHhc
Confidence 3466666677899999999999865432222221 12221 34677777777777666555443
No 80
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.31 E-value=1.1e-11 Score=121.81 Aligned_cols=156 Identities=19% Similarity=0.173 Sum_probs=89.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+++|++|+|||||++++++..| +... .|+.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~-----~~T~------------------------------------------ 33 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSY-----KQTI------------------------------------------ 33 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCC-----CCce------------------------------------------
Confidence 589999999999999999998765 2211 1110
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAI 193 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~l 193 (610)
++......+.+.+.....+.|+||||.... ..+...|+..+|++|+|++..+.+.... ..+
T Consensus 34 ----~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-------------~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~ 96 (215)
T cd04109 34 ----GLDFFSKRVTLPGNLNVTLQVWDIGGQSIG-------------GKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWY 96 (215)
T ss_pred ----eEEEEEEEEEeCCCCEEEEEEEECCCcHHH-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 000000111121212246789999995332 5677889999999999998765421111 112
Q ss_pred HHHHHhC---CCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHH
Q 007263 194 KISREVD---PTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 194 ~l~~~~~---~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
..+.... +.+.++++|.||.|+........+.........+.+++.+++.+..+++..+..+.
T Consensus 97 ~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~ 162 (215)
T cd04109 97 SMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLA 162 (215)
T ss_pred HHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 2222222 22357899999999974332111111111222345677777777666665555443
No 81
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.30 E-value=2.1e-11 Score=113.49 Aligned_cols=105 Identities=15% Similarity=0.210 Sum_probs=60.2
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-cc-HHHHHHHHH---hCCCCCceEEEe
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIKISRE---VDPTGERTFGVL 210 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~-~~~l~l~~~---~~~~~~rti~Vl 210 (610)
..+.++||||..+. ..+...|++.+|++|++++..+... .. ...+..+.. +...+.|+++|+
T Consensus 45 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 111 (162)
T cd04157 45 LSFTAFDMSGQGKY-------------RGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFA 111 (162)
T ss_pred EEEEEEECCCCHhh-------------HHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEE
Confidence 46889999997542 5567789999999999998764321 00 111221111 123478999999
Q ss_pred ecccCCCCCC--cHHHHHcCcc-cccCCCeeEeeeCChhhhhcccc
Q 007263 211 TKIDLMDKGT--DAADILEGKS-YRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 211 tK~D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
||+|+..... +....+.-.. ......++.+++.+..++++...
T Consensus 112 NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~ 157 (162)
T cd04157 112 NKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQ 157 (162)
T ss_pred eCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHH
Confidence 9999875422 1122221111 01112355666666666655443
No 82
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.30 E-value=1.1e-11 Score=114.21 Aligned_cols=150 Identities=18% Similarity=0.198 Sum_probs=85.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
.+|+++|.+++|||||+|++.+..+.+... ..+.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~-~t~~--------------------------------------------- 34 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYK-STIG--------------------------------------------- 34 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccC-Ccee---------------------------------------------
Confidence 369999999999999999999987522211 0000
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~ 194 (610)
.......+.+. ....++.++|+||.... ..+...+++++|++|+++++...+. ......
T Consensus 35 ------~~~~~~~~~~~-~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~ 93 (159)
T cd00154 35 ------VDFKSKTIEID-GKTVKLQIWDTAGQERF-------------RSITPSYYRGAHGAILVYDITNRES-FENLDK 93 (159)
T ss_pred ------eeeEEEEEEEC-CEEEEEEEEecCChHHH-------------HHHHHHHhcCCCEEEEEEECCCHHH-HHHHHH
Confidence 00001111111 11246889999997432 4567888999999999998765321 112222
Q ss_pred H---HHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcc
Q 007263 195 I---SREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKN 251 (610)
Q Consensus 195 l---~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (610)
+ .......+.++++|+||+|+..+.....+.+.........+|+.++.....+++..
T Consensus 94 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 94 WLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEEL 153 (159)
T ss_pred HHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence 2 22222246899999999999632221111111111123455666666655555443
No 83
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.30 E-value=1.5e-11 Score=120.32 Aligned_cols=108 Identities=17% Similarity=0.247 Sum_probs=65.3
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHH----HhCCCCCceEEEeec
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR----EVDPTGERTFGVLTK 212 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~----~~~~~~~rti~VltK 212 (610)
.+.++||||.... ..+...|++++|++|+|++..+.... ....++.. ...+...+.++|.||
T Consensus 53 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~Sf-~~l~~~~~~i~~~~~~~~~~iilvgNK 118 (211)
T cd04111 53 KLQLWDTAGQERF-------------RSITRSYYRNSVGVLLVFDITNRESF-EHVHDWLEEARSHIQPHRPVFILVGHK 118 (211)
T ss_pred EEEEEeCCcchhH-------------HHHHHHHhcCCcEEEEEEECCCHHHH-HHHHHHHHHHHHhcCCCCCeEEEEEEc
Confidence 5889999996432 55677899999999999987653211 11122222 233445677899999
Q ss_pred ccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
.|+.+......+.........+.+|+.+++.+..++++....+...
T Consensus 119 ~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~ 164 (211)
T cd04111 119 CDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQE 164 (211)
T ss_pred cccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 9987543211111111122344677777777766666666555443
No 84
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.30 E-value=1.8e-11 Score=114.57 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=61.1
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH----HHHHhCCCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK----ISREVDPTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~----l~~~~~~~~~rti~Vlt 211 (610)
..+.++||||.... ..+...|++.+|++|+|++..+... -....+ +.+.....+.|+++|.|
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~~piilv~n 114 (164)
T cd04175 49 CMLEILDTAGTEQF-------------TAMRDLYMKNGQGFVLVYSITAQST-FNDLQDLREQILRVKDTEDVPMILVGN 114 (164)
T ss_pred EEEEEEECCCcccc-------------hhHHHHHHhhCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 45789999997543 5567779999999999998654221 111111 22222345789999999
Q ss_pred cccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
|+|+........+........++..|+.+++....++++...
T Consensus 115 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 156 (164)
T cd04175 115 KCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFY 156 (164)
T ss_pred CCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHH
Confidence 999975322111111111122334566777666655554443
No 85
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.30 E-value=2.1e-11 Score=113.69 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=63.0
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc--cHHHH-HHHHHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAI-KISREVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~--~~~~l-~l~~~~~~~~~rti~VltK 212 (610)
..+.++||||.... ..+...+++.+++++++++..+.+.. ..... .+.+..++.+.|+++|+||
T Consensus 48 ~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK 114 (164)
T cd04139 48 VQLNILDTAGQEDY-------------AAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNK 114 (164)
T ss_pred EEEEEEECCChhhh-------------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEc
Confidence 35789999996543 45567789999999999876542210 01121 2333323457999999999
Q ss_pred ccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccH
Q 007263 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (610)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (610)
+|+.+...............++.+++.+++....++++....
T Consensus 115 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 156 (164)
T cd04139 115 CDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYD 156 (164)
T ss_pred cccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHH
Confidence 999763211111111112233456777777776666655443
No 86
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.29 E-value=1.2e-11 Score=115.81 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=48.7
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.|+||||... ...+...+++.+|+++++++..+..... ...+..+....+.+.|.++|.||+
T Consensus 52 ~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 118 (165)
T cd01864 52 VKLQIWDTAGQER-------------FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKC 118 (165)
T ss_pred EEEEEEECCChHH-------------HHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 3688999999532 2556788899999999999876532111 122223333445578999999999
Q ss_pred cCCCCC
Q 007263 214 DLMDKG 219 (610)
Q Consensus 214 D~~~~~ 219 (610)
|+....
T Consensus 119 Dl~~~~ 124 (165)
T cd01864 119 DLEEQR 124 (165)
T ss_pred cccccc
Confidence 987543
No 87
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=99.29 E-value=1.2e-09 Score=122.41 Aligned_cols=469 Identities=23% Similarity=0.252 Sum_probs=339.9
Q ss_pred ceeeccCCCcccCChHHHHHHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHH
Q 007263 86 YAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENM 165 (610)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~ 165 (610)
+..|.+.+...+.++..+..+....+....+...++...++.+.+..+....++.+|.||+...+...+++++......+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (546)
T COG0699 3 EFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDELL 82 (546)
T ss_pred cchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHHH
Confidence 44566677778889999999999988888888899999999999988888999999999999999988888888777778
Q ss_pred HHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCCh
Q 007263 166 VRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQ 245 (610)
Q Consensus 166 ~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~ 245 (610)
-..++...+++|......+.+..+......++..++ +.|+.+.++.+.+.... .+.++..+.+...
T Consensus 83 ~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 148 (546)
T COG0699 83 DLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDALE 148 (546)
T ss_pred HhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCchh
Confidence 888888899998888888877777777777776655 77888777665432111 6678888888888
Q ss_pred hhhhccccHHHHHHHHHhHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007263 246 ADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIA 325 (610)
Q Consensus 246 ~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~el~~l~~~~~ 325 (610)
.++............+..+|..++.+.+....++...+...+...+..++....|+........... .+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-- 220 (546)
T COG0699 149 TDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN-- 220 (546)
T ss_pred HHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch--
Confidence 8888888888888889999999999998777899999999999999999998888766554444332 12111
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHhhhHHHHHhhhhhhhccchHHHHHHHHhhcCCCCCCCCchH
Q 007263 326 ADAGGKLYTIMEICRLFDQIYKEHLDGVRPGGDKIYYVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQ 405 (610)
Q Consensus 326 ~~~~~~~~~l~~~~~~f~~~~~~~i~g~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~g~~p~~~~pe~ 405 (610)
.+......|...+....+| +++... ...| .....+....+.....++.|..|..+....
T Consensus 221 --------~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (546)
T COG0699 221 --------EVLAVIQTLLKRLSELVRG-----ARIRLN-IILF-------SDLEEVSDSPVLLKELASKGERPSLLSGLT 279 (546)
T ss_pred --------HHHHHHHHHHHHHHHHhcc-----chhhhh-hccc-------chHHHhhhhhhHHHHHcccCCCcccccccc
Confidence 2444555555555533333 333322 0001 111122334555555667777776777788
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhccCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007263 406 GYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECS 485 (610)
Q Consensus 406 af~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~~~~~l~~~~~~a~~~i~~li~~E~~ 485 (610)
++..++..++..+..+..+|+..+...+.++....+. ......||.+...+...+.++..+........+...++.+..
T Consensus 280 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (546)
T COG0699 280 LLDTLVETPIGQFDTQINQLLRKLISELVRILLKELE-SASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLAIIDIEER 358 (546)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8899999999999999988888888877776443333 246789999999999999988888888899999999999988
Q ss_pred ccch---hhh---------ccCc-h--------------hhccCCCCC---------------C-----------C----
Q 007263 486 YLTV---DFF---------RKLP-Q--------------DVDKGGNPT---------------H-----------S---- 508 (610)
Q Consensus 486 yi~~---d~~---------~~~~-~--------------~~~~~~~~~---------------~-----------~---- 508 (610)
|+++ ++. .... . .....+... . .
T Consensus 359 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (546)
T COG0699 359 YINTKHPLFLSLRQAAAILSKVLDNLEALLRSLDDSRLRELSDMGLNSLLSNNLEEHLLGSDFSLYKFLNEFLELKKLDA 438 (546)
T ss_pred HHhhcCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhcccchhHHHHHHHHhhcchhhHHHHHHHHhhhccchh
Confidence 8873 111 0000 0 000000000 0 0
Q ss_pred --C---------CCCC---ChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhh
Q 007263 509 --I---------FDRY---NDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSN 574 (610)
Q Consensus 509 --~---------~~~~---~~~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~l~~~L~~~~~~~~~~ 574 (610)
. .... .......+..++++| .++...+.|.++++++..+.+..+...+......++.... .+.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 515 (546)
T COG0699 439 LLATLGEALRRLTGLLPERKTLEKQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLEQL--EDE 515 (546)
T ss_pred hhccchHHHHHhhcccchhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 0 0000 011224567899999 9999999999999999999777776666666666665543 678
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHH
Q 007263 575 LLNEDPAVMERRSALAKRLELYRSAQS 601 (610)
Q Consensus 575 ll~E~~~i~~kR~~l~~~~~~L~~A~~ 601 (610)
+..+.+.+.+.|..+.+..+.+.++..
T Consensus 516 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (546)
T COG0699 516 LLRTAEEILELRLLLEQFLEALKLAAR 542 (546)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999888765
No 88
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.29 E-value=2.7e-11 Score=117.26 Aligned_cols=120 Identities=24% Similarity=0.295 Sum_probs=70.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
.+|+++|..|+|||||+|+|+|..+ |.....++... .+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~-~~~~~~~~~~~-~~t--------------------------------------- 40 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH-EEEGAAPTGVV-ETT--------------------------------------- 40 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC-CCCCccccCcc-ccc---------------------------------------
Confidence 4699999999999999999999764 32111111100 000
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~ 194 (610)
... ..+..+..++++++||||+...... ....++. ..+...|.++++.+ . ++ ++....
T Consensus 41 --------~~~--~~~~~~~~~~l~l~DtpG~~~~~~~-----~~~~l~~---~~~~~~d~~l~v~~-~--~~-~~~d~~ 98 (197)
T cd04104 41 --------MKR--TPYPHPKFPNVTLWDLPGIGSTAFP-----PDDYLEE---MKFSEYDFFIIISS-T--RF-SSNDVK 98 (197)
T ss_pred --------cCc--eeeecCCCCCceEEeCCCCCcccCC-----HHHHHHH---hCccCcCEEEEEeC-C--CC-CHHHHH
Confidence 000 0012233568999999999753221 1111111 12567888777642 2 33 344444
Q ss_pred HHHHhCCCCCceEEEeecccCCC
Q 007263 195 ISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~ 217 (610)
+++.+...+.++++|+||+|+..
T Consensus 99 ~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 99 LAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred HHHHHHHhCCCEEEEEecccchh
Confidence 55556556899999999999964
No 89
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.29 E-value=1.5e-11 Score=116.11 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=89.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|++||++++|||||++++++..| +....++...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~--------------------------------------------- 35 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGV--------------------------------------------- 35 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceee---------------------------------------------
Confidence 699999999999999999999875 2221110000
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l 195 (610)
......+.+.+ ...++.|+||||..+. ..+...|++.+|++++|++..+.+... ....+
T Consensus 36 ------~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~~~~~s~~-~~~~~ 94 (170)
T cd04108 36 ------DFEMERFEILG-VPFSLQLWDTAGQERF-------------KCIASTYYRGAQAIIIVFDLTDVASLE-HTRQW 94 (170)
T ss_pred ------EEEEEEEEECC-EEEEEEEEeCCChHHH-------------HhhHHHHhcCCCEEEEEEECcCHHHHH-HHHHH
Confidence 00001111111 1236889999997543 456778899999999999875532111 11222
Q ss_pred HH----HhCCCCCceEEEeecccCCCCCC-c-HHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHH
Q 007263 196 SR----EVDPTGERTFGVLTKIDLMDKGT-D-AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 259 (610)
Q Consensus 196 ~~----~~~~~~~rti~VltK~D~~~~~~-~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (610)
.. ...+...++++|.||.|+.+... . ...........++..|+.+++.+..+++..+..+.+..
T Consensus 95 ~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 95 LEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred HHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 22 22344467899999999864321 1 11111111122334566677666666655554444433
No 90
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.29 E-value=1.6e-11 Score=114.52 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=60.9
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhC--CCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD--PTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~--~~~~rti~VltK~ 213 (610)
..+.|+||||..+ ...+...|++.+|++++|++..+.+.. .....+...+. ..+.|+++|.||+
T Consensus 51 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~v~v~d~~~~~s~-~~l~~~~~~~~~~~~~~p~iiv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQEE-------------FDAITKAYYRGAQACILVFSTTDRESF-EAIESWKEKVEAECGDIPMVLVQTKI 116 (162)
T ss_pred EEEEEeeCCchHH-------------HHHhHHHHhcCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 3688999999533 255678899999999999986653311 11122222221 2368999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
|+........+........++.+++.++.....++++..
T Consensus 117 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 155 (162)
T cd04106 117 DLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155 (162)
T ss_pred hcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 997543211111111122334567777776655554433
No 91
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.29 E-value=3.1e-11 Score=113.17 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=60.3
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHH----hCCCCCceEEEe
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISRE----VDPTGERTFGVL 210 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~----~~~~~~rti~Vl 210 (610)
...+.++||||.... ..+...+++.+|++++|+++.+.+. .......... ....+.|+++|+
T Consensus 49 ~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~v~vvd~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 49 NARLKFWDLGGQESL-------------RSLWDKYYAECHAIIYVIDSTDRER-FEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred CEEEEEEECCCChhh-------------HHHHHHHhCCCCEEEEEEECchHHH-HHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 457899999997542 4567788999999999998764321 1112222221 123478999999
Q ss_pred ecccCCCCCC--cHHHHHcCccccc---CCCeeEeeeCChhhhhcc
Q 007263 211 TKIDLMDKGT--DAADILEGKSYRL---KFPWIGVVNRSQADINKN 251 (610)
Q Consensus 211 tK~D~~~~~~--~~~~~l~~~~~~l---~~g~~~v~~~s~~~~~~~ 251 (610)
||+|+..... +..+.+....... ...++.+++.+..++++.
T Consensus 115 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 115 NKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 9999865432 1223332221111 224566666655555443
No 92
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.28 E-value=1.8e-11 Score=116.38 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=60.2
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHh----CCCCCceEEEeec
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV----DPTGERTFGVLTK 212 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~----~~~~~rti~VltK 212 (610)
.+.|+||||..+ ...+...|++++|++|+|++..+.+. -.....+...+ ...+.++++|.||
T Consensus 64 ~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~piiiv~nK 129 (180)
T cd04127 64 HLQLWDTAGQER-------------FRSLTTAFFRDAMGFLLIFDLTNEQS-FLNVRNWMSQLQTHAYCENPDIVLCGNK 129 (180)
T ss_pred EEEEEeCCChHH-------------HHHHHHHHhCCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCCcEEEEEeC
Confidence 578999999533 25677889999999999998764321 11122222222 1235789999999
Q ss_pred ccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccH
Q 007263 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (610)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (610)
+|+.+......+.........+..|+.+++.+..++++....
T Consensus 130 ~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~ 171 (180)
T cd04127 130 ADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVER 171 (180)
T ss_pred ccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 998753221111111111223345677766665555544443
No 93
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.28 E-value=3.3e-11 Score=113.97 Aligned_cols=149 Identities=15% Similarity=0.226 Sum_probs=87.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.-++|+++|.+++|||||+++|+|..+ +. ..|+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~------~~~t---------------------------------------- 45 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DT------ISPT---------------------------------------- 45 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CC------cCCc----------------------------------------
Confidence 457899999999999999999998743 11 1110
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH-
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD- 191 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~- 191 (610)
.++....+. + +...+.++||||.... +.+...|++.+|++++|++..+.+.....
T Consensus 46 ------~g~~~~~~~--~---~~~~l~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 101 (173)
T cd04154 46 ------LGFQIKTLE--Y---EGYKLNIWDVGGQKTL-------------RPYWRNYFESTDALIWVVDSSDRLRLDDCK 101 (173)
T ss_pred ------cccceEEEE--E---CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEEEECCCHHHHHHHH
Confidence 011111111 1 1346899999996432 55678899999999999987654211111
Q ss_pred -HH-HHHHHhCCCCCceEEEeecccCCCCCC--cHHHHHcCcc-cccCCCeeEeeeCChhhhhccc
Q 007263 192 -AI-KISREVDPTGERTFGVLTKIDLMDKGT--DAADILEGKS-YRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 192 -~l-~l~~~~~~~~~rti~VltK~D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
.+ .+.+.....+.|+++|+||+|+..... +..+.+.... ......|+.+++.+..++++..
T Consensus 102 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 102 RELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGI 167 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHH
Confidence 11 122211224689999999999875432 1222322111 1122346666666655555433
No 94
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.28 E-value=2.7e-11 Score=113.04 Aligned_cols=151 Identities=13% Similarity=0.149 Sum_probs=85.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+|+|++++|||||+|++++..+.+.. ...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~-------------------------------------------- 37 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQ-ESTIGAA-------------------------------------------- 37 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-CCcccee--------------------------------------------
Confidence 6899999999999999999998863311 1111100
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l 195 (610)
+... .+.+. .....+.++|+||..+ ...+...+++.+|++|+|+++.+.+.. ..+..+
T Consensus 38 -----~~~~--~v~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~ 95 (163)
T cd01860 38 -----FLTQ--TVNLD-DTTVKFEIWDTAGQER-------------YRSLAPMYYRGAAAAIVVYDITSEESF-EKAKSW 95 (163)
T ss_pred -----EEEE--EEEEC-CEEEEEEEEeCCchHH-------------HHHHHHHHhccCCEEEEEEECcCHHHH-HHHHHH
Confidence 0000 01111 1123578999999532 245566789999999999987654211 122222
Q ss_pred ---HHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 196 ---SREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 196 ---~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
+......+.+.++|+||+|+........+.........+..|+.+++....++.+...
T Consensus 96 ~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd01860 96 VKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFT 156 (163)
T ss_pred HHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 2233334678999999999874322111111111222235577777766555554443
No 95
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.28 E-value=2.1e-11 Score=115.15 Aligned_cols=79 Identities=27% Similarity=0.342 Sum_probs=46.4
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-----cccHHHHHH---HHHhCC-----
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-----LATSDAIKI---SREVDP----- 201 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-----~~~~~~l~l---~~~~~~----- 201 (610)
..++.|+||||+....... +.+. .....++..+|++++++++.+.+ ....+...+ ......
T Consensus 43 ~~~~~i~DtpG~~~~~~~~--~~~~----~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (176)
T cd01881 43 GARIQVADIPGLIEGASEG--RGLG----NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILG 116 (176)
T ss_pred CCeEEEEeccccchhhhcC--CCcc----HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHH
Confidence 4568999999986432211 1111 12355678899999999876542 111111111 111111
Q ss_pred --CCCceEEEeecccCCCCC
Q 007263 202 --TGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 202 --~~~rti~VltK~D~~~~~ 219 (610)
.+.|+++|+||+|+....
T Consensus 117 ~~~~~p~ivv~NK~Dl~~~~ 136 (176)
T cd01881 117 LLTAKPVIYVLNKIDLDDAE 136 (176)
T ss_pred HHhhCCeEEEEEchhcCchh
Confidence 368999999999997544
No 96
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.28 E-value=5e-11 Score=111.10 Aligned_cols=104 Identities=14% Similarity=0.205 Sum_probs=62.0
Q ss_pred EEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 140 LIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 140 lvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
+|||||...... ...+. +..+++.+|++|+++++.+.+.... ..+.. +. .+.++++|+||+|+.+..
T Consensus 41 ~iDtpG~~~~~~--------~~~~~-~~~~~~~ad~il~v~d~~~~~s~~~--~~~~~-~~-~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 41 DIDTPGEYFSHP--------RWYHA-LITTLQDVDMLIYVHGANDPESRLP--AGLLD-IG-VSKRQIAVISKTDMPDAD 107 (158)
T ss_pred cccCCccccCCH--------HHHHH-HHHHHhcCCEEEEEEeCCCcccccC--HHHHh-cc-CCCCeEEEEEccccCccc
Confidence 699999854311 11223 3345789999999998765432211 12222 22 357899999999985422
Q ss_pred Cc-HHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 220 TD-AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 220 ~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
.+ +.+.+. ......+++.++.++++++++++..+...
T Consensus 108 ~~~~~~~~~--~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~ 145 (158)
T PRK15467 108 VAATRKLLL--ETGFEEPIFELNSHDPQSVQQLVDYLASL 145 (158)
T ss_pred HHHHHHHHH--HcCCCCCEEEEECCCccCHHHHHHHHHHh
Confidence 11 122222 12222478889999888887777665444
No 97
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.27 E-value=2.5e-11 Score=117.65 Aligned_cols=107 Identities=11% Similarity=0.141 Sum_probs=64.5
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.|+||||-.+. +.+...|++++|++|+|++.++.+... ...+..++.....+.++++|.||+
T Consensus 49 v~l~iwDtaGqe~~-------------~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~ 115 (202)
T cd04120 49 IRLQIWDTAGQERF-------------NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL 115 (202)
T ss_pred EEEEEEeCCCchhh-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 46889999997543 667889999999999999876543111 112233444445578999999999
Q ss_pred cCCCCCCcHHHHHcCcccc-cCCCeeEeeeCChhhhhccccHH
Q 007263 214 DLMDKGTDAADILEGKSYR-LKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~-l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
|+.+............... .+..|+.+++.+..++++.+..+
T Consensus 116 DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 116 DCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred ccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 9864322111111100111 13456667666666665554433
No 98
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.27 E-value=2.9e-11 Score=113.63 Aligned_cols=119 Identities=19% Similarity=0.260 Sum_probs=74.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccccc-ccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV-TRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~-Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
.+++|+|+|.+|+|||||++++++..+.|. .+.. +...
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~---------------------------------------- 44 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGATIGVDF---------------------------------------- 44 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeEE----------------------------------------
Confidence 468999999999999999999997654222 1110 0000
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~-- 189 (610)
.. ..+.+ ......+.++|+||.... ..+...|++.+|+++++++..+.+...
T Consensus 45 ----------~~--~~~~~-~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 98 (169)
T cd04114 45 ----------MI--KTVEI-KGEKIKLQIWDTAGQERF-------------RSITQSYYRSANALILTYDITCEESFRCL 98 (169)
T ss_pred ----------EE--EEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHH
Confidence 00 00111 111135779999996432 445678899999999999876432111
Q ss_pred HHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 190 SDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 190 ~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
...+..++.....+.+.++|.||+|+.++
T Consensus 99 ~~~~~~l~~~~~~~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 99 PEWLREIEQYANNKVITILVGNKIDLAER 127 (169)
T ss_pred HHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 12222234445557889999999998644
No 99
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.27 E-value=2.6e-11 Score=117.72 Aligned_cols=107 Identities=14% Similarity=0.232 Sum_probs=61.5
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHh-------CCCCCceEE
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV-------DPTGERTFG 208 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~-------~~~~~rti~ 208 (610)
..+.|+||||..+. ..+...|+++++++|+|++..+.+.. ..+..+...+ ...+.|+++
T Consensus 50 ~~l~l~Dt~G~~~~-------------~~~~~~~~~~a~~~ilv~D~t~~~s~-~~~~~~~~~i~~~~~~~~~~~~piil 115 (201)
T cd04107 50 VRLQLWDIAGQERF-------------GGMTRVYYRGAVGAIIVFDVTRPSTF-EAVLKWKADLDSKVTLPNGEPIPCLL 115 (201)
T ss_pred EEEEEEECCCchhh-------------hhhHHHHhCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhcccCCCCCcEEE
Confidence 35789999997432 56678899999999999986643211 1111111111 124679999
Q ss_pred EeecccCCCCCCcHHHHHcCcccccC-CCeeEeeeCChhhhhccccHHH
Q 007263 209 VLTKIDLMDKGTDAADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 209 VltK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
|.||.|+.+......+.+.......+ .+|+.+++.+..++++....+.
T Consensus 116 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~ 164 (201)
T cd04107 116 LANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLV 164 (201)
T ss_pred EEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 99999997422111111111111222 3577777766666555554443
No 100
>PLN03118 Rab family protein; Provisional
Probab=99.26 E-value=3.8e-11 Score=117.56 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=66.7
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH---HHHHHHHhC-CCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD---AIKISREVD-PTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~---~l~l~~~~~-~~~~rti~Vlt 211 (610)
..+.|+||||..+. ..+...|++.+|++|+|++..+.+....- ......... ..+.+.++|.|
T Consensus 62 ~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~N 128 (211)
T PLN03118 62 LKLTIWDTAGQERF-------------RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGN 128 (211)
T ss_pred EEEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 35789999996543 45677899999999999987653211111 111122222 34578999999
Q ss_pred cccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHHHH
Q 007263 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRE 261 (610)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e 261 (610)
|+|+........+.........+..|+.+++.+..+++.....+.....+
T Consensus 129 K~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 129 KVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred CccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99987443211111111112233457777777777777666665544443
No 101
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.26 E-value=7.8e-11 Score=119.21 Aligned_cols=140 Identities=20% Similarity=0.255 Sum_probs=84.6
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCccce
Q 007263 9 NKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYA 87 (610)
Q Consensus 9 ~~lq~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~ 87 (610)
.+|.+++..+.+.+ ....+|+|+|.+|+||||++|+|+|..+...+.- .+|..|+...
T Consensus 22 ~~l~~~l~~l~~~~---------~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~------------ 80 (313)
T TIGR00991 22 TKLLELLGKLKEED---------VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS------------ 80 (313)
T ss_pred HHHHHHHHhccccc---------ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE------------
Confidence 45556665555432 3678999999999999999999999875322211 1112221100
Q ss_pred eeccCCCcccCChHHHHHHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHH
Q 007263 88 EFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 167 (610)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~ 167 (610)
. ..+...+++|||||+.+.. ...+...+.++
T Consensus 81 ----------------------------------------~---~~~G~~l~VIDTPGL~d~~------~~~e~~~~~ik 111 (313)
T TIGR00991 81 ----------------------------------------R---TRAGFTLNIIDTPGLIEGG------YINDQAVNIIK 111 (313)
T ss_pred ----------------------------------------E---EECCeEEEEEECCCCCchH------HHHHHHHHHHH
Confidence 0 0133478999999998642 23344455666
Q ss_pred HHhc--CCCeEEEEeecC--CCccccHHHHHHHHHhC--CCCCceEEEeecccCCCC
Q 007263 168 SYIE--KPNCIILAISPA--NQDLATSDAIKISREVD--PTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 168 ~yi~--~~d~iil~v~~a--~~d~~~~~~l~l~~~~~--~~~~rti~VltK~D~~~~ 218 (610)
.|+. .+|++++|.... ..+......++..+.+- ..-.++|+|+|+.|..++
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 6654 588888885322 22212233444444432 123789999999998854
No 102
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.26 E-value=3.3e-11 Score=115.63 Aligned_cols=110 Identities=14% Similarity=0.183 Sum_probs=65.2
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.++||||.... ..+...+++.+|++|++++..+.+.... ..+.......+...+.++|.||.
T Consensus 49 ~~~~i~Dt~g~~~~-------------~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~ 115 (188)
T cd04125 49 IKLQIWDTNGQERF-------------RSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKS 115 (188)
T ss_pred EEEEEEECCCcHHH-------------HhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 35789999995432 4567888999999999998765321110 11222333344457899999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
|+.+................+..|+.+++....+++.....+...
T Consensus 116 Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 116 DLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred CCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 987433211111111112234467888877777766655554433
No 103
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.26 E-value=7.7e-11 Score=117.61 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
.-.+|+|+|..|+|||||+|+|+|....+++.. .+|+.+....
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~------------------------------------ 73 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVS------------------------------------ 73 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEE------------------------------------
Confidence 567999999999999999999999876554422 2222221111
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc--CCCeEEEEeecCCCcccc
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLAT 189 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~d~iil~v~~a~~d~~~ 189 (610)
. ..+...+++|||||+...... ......+.+.+..|++ ..++|+++..........
T Consensus 74 ------------------~-~~~g~~i~vIDTPGl~~~~~~---~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~ 131 (249)
T cd01853 74 ------------------G-TVDGFKLNIIDTPGLLESVMD---QRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDY 131 (249)
T ss_pred ------------------E-EECCeEEEEEECCCcCcchhh---HHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCH
Confidence 0 112346899999999865321 1134455566777876 567766664332222222
Q ss_pred H--HHHHHHHHhCCC--CCceEEEeecccCCCCC
Q 007263 190 S--DAIKISREVDPT--GERTFGVLTKIDLMDKG 219 (610)
Q Consensus 190 ~--~~l~l~~~~~~~--~~rti~VltK~D~~~~~ 219 (610)
. ..++..+..-.. -.++++|+||+|...+.
T Consensus 132 ~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 132 LDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 2 333333332111 26899999999998654
No 104
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.26 E-value=3.8e-11 Score=115.50 Aligned_cols=109 Identities=13% Similarity=0.132 Sum_probs=63.8
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhC---CCCCceEEEee
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVD---PTGERTFGVLT 211 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~---~~~~rti~Vlt 211 (610)
.+.|+||||..+. ..+...|++.+|++|+|++..+..... ...+..+.... +.+.|+++|.|
T Consensus 48 ~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgN 114 (190)
T cd04144 48 MLEVLDTAGQEEY-------------TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGN 114 (190)
T ss_pred EEEEEECCCchhh-------------HHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEE
Confidence 5889999996442 456778999999999999865532111 11222222222 24689999999
Q ss_pred cccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
|+|+.+................+..|+.+++....++++....+...
T Consensus 115 K~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~ 161 (190)
T cd04144 115 KCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRA 161 (190)
T ss_pred ChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 99986432211111111112233457777777666666655555443
No 105
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.25 E-value=3.4e-11 Score=112.45 Aligned_cols=103 Identities=18% Similarity=0.164 Sum_probs=58.6
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHH-HHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIK-ISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~-l~~~~~~~~~rti~VltK~ 213 (610)
.+.|+||||..+. ..+...|++++|++|+|++.++..... ..... +.+.....+.|+++|.||+
T Consensus 50 ~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~ 116 (163)
T cd04176 50 VLEILDTAGTEQF-------------ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKV 116 (163)
T ss_pred EEEEEECCCcccc-------------cchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 5789999996543 345667899999999999876532111 11111 2222233578999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
|+..................+.+|+.+++++..++++..
T Consensus 117 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 117 DLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELF 155 (163)
T ss_pred cchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHH
Confidence 986432211111111112223456666666655554443
No 106
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.25 E-value=4.8e-11 Score=110.90 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=60.6
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HHHHHHHHhCCCCCceEEEeeccc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~l~l~~~~~~~~~rti~VltK~D 214 (610)
.+.++|+||.... ..+...++..+|+++++++..+.+.... ..+..++...+.+.++++|+||+|
T Consensus 50 ~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D 116 (162)
T cd04123 50 DLAIWDTAGQERY-------------HALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKID 116 (162)
T ss_pred EEEEEECCchHHH-------------HHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 5889999995332 4556678899999999998765432111 111222333344689999999999
Q ss_pred CCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccH
Q 007263 215 LMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (610)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (610)
+........+.+.......+..++.++.++..++++....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~ 156 (162)
T cd04123 117 LERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLS 156 (162)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 8743321111111111223445666776666555544443
No 107
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=2.5e-11 Score=121.55 Aligned_cols=169 Identities=22% Similarity=0.311 Sum_probs=102.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcc---cccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHH
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPR---GSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQ 108 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~---~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 108 (610)
..-|.|.++|.-|.||||+|+.|++.++ |. |..++|.+-+.+- .-...+.-.-....-.+.+.|.-.+..-
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~vM-~G~~e~~ipGnal~vd~~~pF~gL~~FG---- 129 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAVM-HGDEEGSIPGNALVVDAKKPFRGLNKFG---- 129 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEEE-ecCcccccCCceeeecCCCchhhhhhhH----
Confidence 4789999999999999999999999885 62 2233333332222 1111110000000111122222222222
Q ss_pred HHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc
Q 007263 109 DETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA 188 (610)
Q Consensus 109 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~ 188 (610)
.+|-....+..+.++-+..+++|||||+-... .|.-+-.-.......-|++++|.|||+.++..-|+.
T Consensus 130 ----------~aflnRf~csqmp~~vLe~vtiVdtPGILsge--KQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIs 197 (532)
T KOG1954|consen 130 ----------NAFLNRFMCSQLPNQVLESVTIVDTPGILSGE--KQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDIS 197 (532)
T ss_pred ----------HHHHHHHHHhcCChhhhhheeeeccCcccccc--hhcccccCChHHHHHHHHHhccEEEEEechhhcccc
Confidence 22222223334556666789999999997643 222111222356677889999999999999988775
Q ss_pred cHHHHHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 189 TSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 189 ~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
. +.-..+..+......+-+|+||+|.++..
T Consensus 198 d-Ef~~vi~aLkG~EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 198 D-EFKRVIDALKGHEDKIRVVLNKADQVDTQ 227 (532)
T ss_pred H-HHHHHHHHhhCCcceeEEEeccccccCHH
Confidence 3 34446677777789999999999999754
No 108
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.25 E-value=6.2e-11 Score=108.09 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=53.7
Q ss_pred EEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 139 TLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 139 tlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
.+|||||.... .......+. .+++++|++|+|++..+...... ..+.... +.+.++|+||+|+.+.
T Consensus 38 ~~iDt~G~~~~--------~~~~~~~~~-~~~~~ad~vilv~d~~~~~s~~~--~~~~~~~---~~p~ilv~NK~Dl~~~ 103 (142)
T TIGR02528 38 GAIDTPGEYVE--------NRRLYSALI-VTAADADVIALVQSATDPESRFP--PGFASIF---VKPVIGLVTKIDLAEA 103 (142)
T ss_pred eeecCchhhhh--------hHHHHHHHH-HHhhcCCEEEEEecCCCCCcCCC--hhHHHhc---cCCeEEEEEeeccCCc
Confidence 57999997321 112233333 35899999999998765432211 2233222 3599999999998753
Q ss_pred CCcHHHHHcCcccccC-CCeeEeeeCChhhhhcc
Q 007263 219 GTDAADILEGKSYRLK-FPWIGVVNRSQADINKN 251 (610)
Q Consensus 219 ~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~ 251 (610)
.... +.........+ .+++.++..+..+++++
T Consensus 104 ~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 136 (142)
T TIGR02528 104 DVDI-ERAKELLETAGAEPIFEISSVDEQGLEAL 136 (142)
T ss_pred ccCH-HHHHHHHHHcCCCcEEEEecCCCCCHHHH
Confidence 2211 11111111112 25677777666655443
No 109
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.24 E-value=6.9e-11 Score=109.01 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=46.4
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHh---CCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV---DPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~---~~~~~rti~VltK 212 (610)
..+.++||||.... +.+...|++.+|+++++++....+........+.... ...+.|.++|+||
T Consensus 44 ~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 110 (159)
T cd04159 44 VTLKVWDLGGQPRF-------------RSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNK 110 (159)
T ss_pred EEEEEEECCCCHhH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeC
Confidence 46889999996432 5667888999999999998654321111111111111 2246899999999
Q ss_pred ccCCCCC
Q 007263 213 IDLMDKG 219 (610)
Q Consensus 213 ~D~~~~~ 219 (610)
.|+....
T Consensus 111 ~D~~~~~ 117 (159)
T cd04159 111 NDLPGAL 117 (159)
T ss_pred ccccCCc
Confidence 9987543
No 110
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.24 E-value=4.3e-11 Score=112.25 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=62.7
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhC---CCCCceEEEe
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVD---PTGERTFGVL 210 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~---~~~~rti~Vl 210 (610)
..+.++||||..+. ..+...++..+|++|+|++..+..... ...+...+... ..+.|+++|.
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 115 (165)
T cd04140 49 CTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVG 115 (165)
T ss_pred EEEEEEECCCCCcc-------------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 36889999997653 445667889999999998866532111 11222333332 2468999999
Q ss_pred ecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccH
Q 007263 211 TKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (610)
Q Consensus 211 tK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (610)
||+|+.....-............+.+|+.+++....++++....
T Consensus 116 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 116 NKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred ECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 99998653221111111111223456777777776666555443
No 111
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.24 E-value=6.9e-11 Score=109.97 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=45.7
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHH-h---CCCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISRE-V---DPTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~-~---~~~~~rti~Vlt 211 (610)
..+.++||||.... ..+...|+..+|++|+|++..+... -......... + ...+.|+++|+|
T Consensus 44 ~~l~i~D~~G~~~~-------------~~~~~~~~~~~~~iv~v~D~~~~~~-~~~~~~~~~~~~~~~~~~~~piilv~n 109 (160)
T cd04156 44 LSLTVWDVGGQEKM-------------RTVWKCYLENTDGLVYVVDSSDEAR-LDESQKELKHILKNEHIKGVPVVLLAN 109 (160)
T ss_pred eEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCcHHH-HHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 46899999997432 4556778999999999998765321 1112111121 1 124789999999
Q ss_pred cccCCC
Q 007263 212 KIDLMD 217 (610)
Q Consensus 212 K~D~~~ 217 (610)
|+|+..
T Consensus 110 K~Dl~~ 115 (160)
T cd04156 110 KQDLPG 115 (160)
T ss_pred Cccccc
Confidence 999864
No 112
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.24 E-value=4.9e-11 Score=115.67 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=90.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|++|+|||||++++.+..| +... .+|.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~-~~~~-~~t~------------------------------------------- 39 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF-SGSY-ITTI------------------------------------------- 39 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCc-Cccc-------------------------------------------
Confidence 357899999999999999999998765 1110 1110
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
++......+.+. .....+.|+||||.... ..+...|++.++++|+|++.++... -...
T Consensus 40 -------~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~-------------~~~~~~~~~~a~~iilv~D~~~~~s-~~~~ 97 (199)
T cd04110 40 -------GVDFKIRTVEIN-GERVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDVTNGES-FVNV 97 (199)
T ss_pred -------cceeEEEEEEEC-CEEEEEEEEeCCCchhH-------------HHHHHHHhCCCcEEEEEEECCCHHH-HHHH
Confidence 000000111111 11235789999996432 5567889999999999998765321 1122
Q ss_pred HHHHHHhC--CCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHH
Q 007263 193 IKISREVD--PTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 193 l~l~~~~~--~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
..+...+. ....+.++|.||+|+.+................+..|+.++.....++.+++..+..
T Consensus 98 ~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 98 KRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred HHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence 22222221 235789999999998754321111111111223355777777666666655555443
No 113
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.24 E-value=3.9e-11 Score=111.23 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=86.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+|+|.+++|||||++++++..+ +.....++..+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~------------------------------------------- 36 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSY------------------------------------------- 36 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeE-------------------------------------------
Confidence 589999999999999999998763 333222222110
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAI 193 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~l 193 (610)
.....+ ......+.++|+||.... ..+...+++.+|+++++++..+.+.... ...
T Consensus 37 ---------~~~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 93 (160)
T cd00876 37 ---------RKTIVV-DGETYTLDILDTAGQEEF-------------SAMRDLYIRQGDGFILVYSITDRESFEEIKGYR 93 (160)
T ss_pred ---------EEEEEE-CCEEEEEEEEECCChHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 000111 111235789999996542 4556778899999999998765432111 111
Q ss_pred HHHHHhCC-CCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 194 KISREVDP-TGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 194 ~l~~~~~~-~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
.......+ .+.|+++|+||+|+........+.+.......+.+|+.+++....+++...
T Consensus 94 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 94 EQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVF 153 (160)
T ss_pred HHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Confidence 12222222 479999999999997632211111111122233567777776655554443
No 114
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.23 E-value=7e-11 Score=111.76 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=62.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HHHHHHHHh-CCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREV-DPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~l~l~~~~-~~~~~rti~VltK 212 (610)
..+.|+||||.... ..+...|+..+|++|+|++..+.+.... +........ ...+.|+++|.||
T Consensus 50 ~~l~i~Dt~G~~~~-------------~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK 116 (172)
T cd04141 50 ALLDILDTAGQAEF-------------TAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNK 116 (172)
T ss_pred EEEEEEeCCCchhh-------------HHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 35889999997542 5677889999999999998765332111 111223333 2346899999999
Q ss_pred ccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
+|+.....-..+.........+.+|+.+++....++++.+..+
T Consensus 117 ~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 117 VDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred hhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 9986432100000010111223466666666665555544433
No 115
>PTZ00369 Ras-like protein; Provisional
Probab=99.23 E-value=7.8e-11 Score=113.21 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=58.5
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HHHH-HHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIK-ISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~l~-l~~~~~~~~~rti~VltK~ 213 (610)
.+.|+||||..+. ..+...|++.+|++|+|++..+.+.... .... +.+.....+.|+++|.||+
T Consensus 54 ~l~i~Dt~G~~~~-------------~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 120 (189)
T PTZ00369 54 LLDILDTAGQEEY-------------SAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKC 120 (189)
T ss_pred EEEEEeCCCCccc-------------hhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 5778999997553 4567789999999999998765432111 1111 2222223467999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
|+.....-............+..|+.+++.+..++++.+.
T Consensus 121 Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~ 160 (189)
T PTZ00369 121 DLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFY 160 (189)
T ss_pred ccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHH
Confidence 9854321000000101112234566666665555544333
No 116
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.23 E-value=6.6e-11 Score=110.05 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=47.1
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc---HHHHHHHHHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SDAIKISREVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~---~~~l~l~~~~~~~~~rti~VltK 212 (610)
..+.++||||..+. ..+...|++.+|++|+|++..+..... .....+.+.....+.|+++|+||
T Consensus 43 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd04151 43 LKFQVWDLGGQTSI-------------RPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANK 109 (158)
T ss_pred EEEEEEECCCCHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeC
Confidence 46889999997542 566788999999999999866532111 11111222222246899999999
Q ss_pred ccCCCC
Q 007263 213 IDLMDK 218 (610)
Q Consensus 213 ~D~~~~ 218 (610)
+|+.+.
T Consensus 110 ~Dl~~~ 115 (158)
T cd04151 110 QDMPGA 115 (158)
T ss_pred CCCCCC
Confidence 998643
No 117
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.23 E-value=1.8e-10 Score=112.36 Aligned_cols=124 Identities=24% Similarity=0.342 Sum_probs=83.3
Q ss_pred CCCeEE-EEcCCCCCHHHHHhhhhCCCCCccc-ccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 007263 33 SLPAIA-VVGGQSSGKSSVLESIVGKDFLPRG-SGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (610)
Q Consensus 33 ~lP~Iv-VvG~~ssGKSSllnal~G~~~lP~~-~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (610)
.-|..+ ++|..|+||||++|||++...-|+. .+.||+-++...
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~----------------------------------- 81 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR----------------------------------- 81 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH-----------------------------------
Confidence 345544 9999999999999999976554554 344554442211
Q ss_pred hhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH
Q 007263 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (610)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~ 190 (610)
.+.+...|+|+||||+.+.... ....+..+..|+.+.|.+++++.....++.+.
T Consensus 82 --------------------~~~~~~~l~lwDtPG~gdg~~~------D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d 135 (296)
T COG3596 82 --------------------LSYDGENLVLWDTPGLGDGKDK------DAEHRQLYRDYLPKLDLVLWLIKADDRALGTD 135 (296)
T ss_pred --------------------hhccccceEEecCCCcccchhh------hHHHHHHHHHHhhhccEEEEeccCCCccccCC
Confidence 1113457999999999874332 23457788999999997777766554444443
Q ss_pred HHHHHHHHhCC--CCCceEEEeecccCCCCC
Q 007263 191 DAIKISREVDP--TGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 191 ~~l~l~~~~~~--~~~rti~VltK~D~~~~~ 219 (610)
. .+++.+-- .+.|+++|+|.+|...++
T Consensus 136 ~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 136 E--DFLRDVIILGLDKRVLFVVTQADRAEPG 164 (296)
T ss_pred H--HHHHHHHHhccCceeEEEEehhhhhccc
Confidence 3 34444432 248999999999988665
No 118
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.22 E-value=1e-10 Score=110.19 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHh-C---CCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV-D---PTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~-~---~~~~rti~Vlt 211 (610)
..+.++||||.... ..+...|+..+|++|+|++..+.... .+.......+ . ..+.++++|.|
T Consensus 43 ~~i~l~Dt~G~~~~-------------~~~~~~~~~~ad~ii~V~D~s~~~s~-~~~~~~~~~~~~~~~~~~~piilv~N 108 (169)
T cd04158 43 LKFTIWDVGGKHKL-------------RPLWKHYYLNTQAVVFVVDSSHRDRV-SEAHSELAKLLTEKELRDALLLIFAN 108 (169)
T ss_pred EEEEEEECCCChhc-------------chHHHHHhccCCEEEEEEeCCcHHHH-HHHHHHHHHHhcChhhCCCCEEEEEe
Confidence 46889999997542 45677889999999999987653211 1122222222 1 23479999999
Q ss_pred cccCCCCCC--cHHHHHcCcccccCC--CeeEeeeCChhhhhccccHHHHHHH
Q 007263 212 KIDLMDKGT--DAADILEGKSYRLKF--PWIGVVNRSQADINKNVDMIAARRR 260 (610)
Q Consensus 212 K~D~~~~~~--~~~~~l~~~~~~l~~--g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (610)
|.|+.+..+ +....+.......+. .++.+++++..++++....+.....
T Consensus 109 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 109 KQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred CcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 999864322 122332211111111 2344566666667666665544333
No 119
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.22 E-value=1.9e-10 Score=110.01 Aligned_cols=114 Identities=17% Similarity=0.239 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.-++|+++|.+|+||||++++++|..+- . ..+|..|+.-
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~-~--~~~t~~~~~~-------------------------------------- 54 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLA-Q--HQPTQHPTSE-------------------------------------- 54 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCc-c--cCCccccceE--------------------------------------
Confidence 4589999999999999999999997641 0 1122222110
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
.+.+ +...+.++||||.... +.+...|++.+|++|+|++.++.+......
T Consensus 55 --------------~~~~---~~~~~~~~D~~G~~~~-------------~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~ 104 (184)
T smart00178 55 --------------ELAI---GNIKFTTFDLGGHQQA-------------RRLWKDYFPEVNGIVYLVDAYDKERFAESK 104 (184)
T ss_pred --------------EEEE---CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEEEECCcHHHHHHHH
Confidence 0111 2346889999997542 556778999999999999876543111111
Q ss_pred HHHHHHh---CCCCCceEEEeecccCCC
Q 007263 193 IKISREV---DPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 193 l~l~~~~---~~~~~rti~VltK~D~~~ 217 (610)
..+...+ .-.+.|+++|+||.|+..
T Consensus 105 ~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 105 RELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 1122211 124789999999999853
No 120
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.22 E-value=6.8e-11 Score=111.03 Aligned_cols=70 Identities=21% Similarity=0.159 Sum_probs=47.0
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---HHHHHHHHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~---~~l~l~~~~~~~~~rti~VltK 212 (610)
..+.++||||.... ......++..+|++++|++..+.+.... .....++...+ +.|+++|.||
T Consensus 47 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK 112 (166)
T cd01893 47 VPTTIVDTSSRPQD-------------RANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNK 112 (166)
T ss_pred EEEEEEeCCCchhh-------------hHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 36889999997542 3445677899999999987654322111 12233444433 7899999999
Q ss_pred ccCCCCC
Q 007263 213 IDLMDKG 219 (610)
Q Consensus 213 ~D~~~~~ 219 (610)
+|+.+..
T Consensus 113 ~Dl~~~~ 119 (166)
T cd01893 113 SDLRDGS 119 (166)
T ss_pred hhccccc
Confidence 9997543
No 121
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.22 E-value=6.4e-11 Score=106.37 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=55.5
Q ss_pred EEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 140 LIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 140 lvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
+|||||=+-.. ............++|+|+++.++......-... +++.. ..|+|||+||+|+..+.
T Consensus 40 ~IDTPGEyiE~---------~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~--fa~~f---~~pvIGVITK~Dl~~~~ 105 (143)
T PF10662_consen 40 TIDTPGEYIEN---------PRFYHALIVTAQDADVVLLLQDATEPRSVFPPG--FASMF---NKPVIGVITKIDLPSDD 105 (143)
T ss_pred EEECChhheeC---------HHHHHHHHHHHhhCCEEEEEecCCCCCccCCch--hhccc---CCCEEEEEECccCccch
Confidence 59999954311 112333445566899999988766533222222 33333 58999999999998444
Q ss_pred CcH---HHHHcCcccccCCCeeEeeeCChhhhhccccH
Q 007263 220 TDA---ADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (610)
Q Consensus 220 ~~~---~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (610)
.+. .+.|+..- . .+-|.|+..+.++++++.+.
T Consensus 106 ~~i~~a~~~L~~aG--~-~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 106 ANIERAKKWLKNAG--V-KEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred hhHHHHHHHHHHcC--C-CCeEEEECCCCcCHHHHHHH
Confidence 332 33333211 1 13356666666666555443
No 122
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.22 E-value=6.9e-11 Score=110.41 Aligned_cols=102 Identities=20% Similarity=0.138 Sum_probs=59.0
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.++||||..+. ..+...|++++|++|+|++..+..... ...+..++... .+.|.++|+||+
T Consensus 49 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~ 114 (161)
T cd04124 49 ILVDFWDTAGQERF-------------QTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKI 114 (161)
T ss_pred EEEEEEeCCCchhh-------------hhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECc
Confidence 35789999996442 556788999999999999876532111 11222223322 258999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (610)
|+..... .+. .......+..++.+++....++++....
T Consensus 115 Dl~~~~~--~~~-~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 115 DLDPSVT--QKK-FNFAEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred cCchhHH--HHH-HHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9843211 111 1111112345666666655555544443
No 123
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.22 E-value=7.8e-11 Score=110.82 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=59.4
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-cH-HHHHHH-HHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TS-DAIKIS-REVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~~-~~l~l~-~~~~~~~~rti~VltK 212 (610)
..+.++||||..+. ..+...|++.++.+++|++..+.... .. ...... +.....+.|+++|.||
T Consensus 49 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 115 (168)
T cd04177 49 CDLEILDTAGTEQF-------------TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNK 115 (168)
T ss_pred EEEEEEeCCCcccc-------------hhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEC
Confidence 36789999997553 45677888999999999876543211 11 111222 2233457899999999
Q ss_pred ccCCCCCCcHHHHHcCcccccC-CCeeEeeeCChhhhhcc
Q 007263 213 IDLMDKGTDAADILEGKSYRLK-FPWIGVVNRSQADINKN 251 (610)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~ 251 (610)
.|+........+.........+ .+|+.+++.+..+++..
T Consensus 116 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 116 ADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEV 155 (168)
T ss_pred hhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHH
Confidence 9986543211111111111222 45677776665555443
No 124
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.21 E-value=3e-11 Score=113.56 Aligned_cols=69 Identities=23% Similarity=0.204 Sum_probs=44.6
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH---HHHHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA---IKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~---l~l~~~~~~~~~rti~VltK~ 213 (610)
.+.++||||.... ..+...+++.+|++++|++..+........ +.......+ +.|+++|.||+
T Consensus 49 ~l~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~ 114 (171)
T cd00157 49 NLGLWDTAGQEEY-------------DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKI 114 (171)
T ss_pred EEEEEeCCCcccc-------------cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccH
Confidence 5889999997653 122335668899999999876532211111 112222222 69999999999
Q ss_pred cCCCCC
Q 007263 214 DLMDKG 219 (610)
Q Consensus 214 D~~~~~ 219 (610)
|+.+..
T Consensus 115 Dl~~~~ 120 (171)
T cd00157 115 DLRDDE 120 (171)
T ss_pred Hhhhch
Confidence 987654
No 125
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.21 E-value=1.3e-10 Score=108.28 Aligned_cols=78 Identities=23% Similarity=0.390 Sum_probs=51.2
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCC---CeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP---NCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~---d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
.++++||||+..... +.+.......++..|+... +.++++++.... .......+.+.+...+.++++|+||+
T Consensus 46 ~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~--~~~~~~~~~~~l~~~~~~vi~v~nK~ 120 (170)
T cd01876 46 KFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHG--PTEIDLEMLDWLEELGIPFLVVLTKA 120 (170)
T ss_pred eEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcC--CCHhHHHHHHHHHHcCCCEEEEEEch
Confidence 789999999866433 3334556677777887654 456666654332 12333345555555678999999999
Q ss_pred cCCCCC
Q 007263 214 DLMDKG 219 (610)
Q Consensus 214 D~~~~~ 219 (610)
|++..+
T Consensus 121 D~~~~~ 126 (170)
T cd01876 121 DKLKKS 126 (170)
T ss_pred hcCChH
Confidence 997544
No 126
>PLN03108 Rab family protein; Provisional
Probab=99.21 E-value=8.4e-11 Score=115.03 Aligned_cols=153 Identities=14% Similarity=0.189 Sum_probs=87.3
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
.-+|+|+|++++|||||++.|++..|-|......+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~--------------------------------------------- 40 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--------------------------------------------- 40 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc---------------------------------------------
Confidence 46899999999999999999998876322111000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--H
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--D 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~ 191 (610)
+......+.+.+. ...+.++||||.... ..+...|+..+|++|+|++..+...... .
T Consensus 41 -------~~~~~~~i~~~~~-~i~l~l~Dt~G~~~~-------------~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~ 99 (210)
T PLN03108 41 -------VEFGARMITIDNK-PIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLAS 99 (210)
T ss_pred -------ceEEEEEEEECCE-EEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCcHHHHHHHHH
Confidence 0000001111111 125789999996432 4567788999999999998765432111 1
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
.+..+........++++|.||+|+........+.........+..|+.+++.+..++++.+
T Consensus 100 ~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f 160 (210)
T PLN03108 100 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (210)
T ss_pred HHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 1222223334468999999999986532111111111111233456777766665555444
No 127
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.21 E-value=1.9e-10 Score=106.84 Aligned_cols=71 Identities=23% Similarity=0.317 Sum_probs=48.4
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--H-HHHHHHHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--D-AIKISREVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~-~l~l~~~~~~~~~rti~VltK 212 (610)
..+.++||||.... ..+...++..+|++++++++.+.+.... . ...+.+.....+.|+++|+||
T Consensus 43 ~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd00878 43 VSFTVWDVGGQDKI-------------RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANK 109 (158)
T ss_pred EEEEEEECCCChhh-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeec
Confidence 46899999996542 4567788899999999998876421111 1 112223233457899999999
Q ss_pred ccCCCCC
Q 007263 213 IDLMDKG 219 (610)
Q Consensus 213 ~D~~~~~ 219 (610)
+|+....
T Consensus 110 ~D~~~~~ 116 (158)
T cd00878 110 QDLPGAL 116 (158)
T ss_pred cCCcccc
Confidence 9987543
No 128
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.21 E-value=1.4e-10 Score=107.95 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=59.3
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHH---H-HHhCCCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI---S-REVDPTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l---~-~~~~~~~~rti~Vlt 211 (610)
..+.++||||.... ..+...+++.+|+++++++..+... -.....+ + +.....+.+.++|.|
T Consensus 49 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~~iv~n 114 (161)
T cd01863 49 VKLAIWDTAGQERF-------------RTLTSSYYRGAQGVILVYDVTRRDT-FTNLETWLNELETYSTNNDIVKMLVGN 114 (161)
T ss_pred EEEEEEECCCchhh-------------hhhhHHHhCCCCEEEEEEECCCHHH-HHhHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 46889999996432 4456778899999999998654321 1111112 2 223455788999999
Q ss_pred cccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcc
Q 007263 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKN 251 (610)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (610)
|+|+........+... .....+..|+.++.....++++.
T Consensus 115 K~D~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 115 KIDKENREVTREEGLK-FARKHNMLFIETSAKTRDGVQQA 153 (161)
T ss_pred CCcccccccCHHHHHH-HHHHcCCEEEEEecCCCCCHHHH
Confidence 9999743322222111 11223445666666555554443
No 129
>PLN03110 Rab GTPase; Provisional
Probab=99.20 E-value=7.8e-11 Score=115.74 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=87.2
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
.-.|+++|++++|||||+++|++..+ +... .|+.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~-----~~t~---------------------------------------- 45 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEF-CLES-----KSTI---------------------------------------- 45 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCC-----CCce----------------------------------------
Confidence 45899999999999999999998765 2111 1100
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~ 191 (610)
+.......+.+. .....+.|+||||..+ ...+...|++.++.+|+|++..+..... ..
T Consensus 46 ------g~~~~~~~v~~~-~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~ 105 (216)
T PLN03110 46 ------GVEFATRTLQVE-GKTVKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDITKRQTFDNVQR 105 (216)
T ss_pred ------eEEEEEEEEEEC-CEEEEEEEEECCCcHH-------------HHHHHHHHhCCCCEEEEEEECCChHHHHHHHH
Confidence 000000111111 1223688999999543 2567788999999999999876432111 12
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
.+..++...+.+.++++|.||+|+........+.........+.+|+.++.....++++..
T Consensus 106 ~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf 166 (216)
T PLN03110 106 WLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF 166 (216)
T ss_pred HHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 2333444445678999999999985432111111111111233456666555544444333
No 130
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.20 E-value=9.9e-11 Score=112.75 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=60.7
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhC--CCCCceEEEeeccc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD--PTGERTFGVLTKID 214 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~--~~~~rti~VltK~D 214 (610)
.+.++||||..+. ..+...|+..+|++|+|++..+.... .....+...+. ..+.|+++|.||+|
T Consensus 51 ~l~i~D~~G~~~~-------------~~~~~~~~~~~d~iilv~d~~~~~s~-~~~~~~~~~i~~~~~~~piilv~nK~D 116 (193)
T cd04118 51 TLGIWDTAGSERY-------------EAMSRIYYRGAKAAIVCYDLTDSSSF-ERAKFWVKELQNLEEHCKIYLCGTKSD 116 (193)
T ss_pred EEEEEECCCchhh-------------hhhhHhhcCCCCEEEEEEECCCHHHH-HHHHHHHHHHHhcCCCCCEEEEEEccc
Confidence 4779999996542 44566788999999999986543211 11122333332 22689999999999
Q ss_pred CCCCCCcH----HHHHcCcccccCCCeeEeeeCChhhhhccccHHHH
Q 007263 215 LMDKGTDA----ADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 215 ~~~~~~~~----~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
+.+..... ...+.......+..++.+++.+..+++.+...+..
T Consensus 117 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 163 (193)
T cd04118 117 LIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAE 163 (193)
T ss_pred ccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 86432110 00011111122345666666666666555554443
No 131
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.20 E-value=1.1e-10 Score=113.01 Aligned_cols=109 Identities=12% Similarity=0.151 Sum_probs=62.9
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH----HHHHHhCCCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI----KISREVDPTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l----~l~~~~~~~~~rti~Vlt 211 (610)
..+.|+||||.... ..+...|+..+|++|+|++..+.+. -.... .+.......+.|+++|+|
T Consensus 47 ~~l~i~D~~G~~~~-------------~~~~~~~~~~ad~vilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~~piilv~N 112 (198)
T cd04147 47 LTLDILDTSGSYSF-------------PAMRKLSIQNSDAFALVYAVDDPES-FEEVERLREEILEVKEDKFVPIVVVGN 112 (198)
T ss_pred EEEEEEECCCchhh-------------hHHHHHHhhcCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 36889999997553 3455678999999999998654221 11111 122222335789999999
Q ss_pred cccCCCCCCc--HHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 212 KIDLMDKGTD--AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 212 K~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
|+|+...... .....+......+.+|+.+++.+..++++++..+...
T Consensus 113 K~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 161 (198)
T cd04147 113 KADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQ 161 (198)
T ss_pred ccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 9998753211 1111110011223456666666666666555554443
No 132
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.19 E-value=9.2e-11 Score=109.60 Aligned_cols=151 Identities=13% Similarity=0.184 Sum_probs=87.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+|+|++++|||||++.+++..|.|... +|.-+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~t~~~-------------------------------------------- 35 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHI--STIGV-------------------------------------------- 35 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC--Cceee--------------------------------------------
Confidence 58999999999999999999887632211 11100
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l 195 (610)
......+.+.+ ....+.++||||..+. ..+...|+..+|++++|++..+.... .....+
T Consensus 36 ------~~~~~~~~~~~-~~~~l~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~sf-~~~~~~ 94 (161)
T cd04117 36 ------DFKMKTIEVDG-IKVRIQIWDTAGQERY-------------QTITKQYYRRAQGIFLVYDISSERSY-QHIMKW 94 (161)
T ss_pred ------EEEEEEEEECC-EEEEEEEEeCCCcHhH-------------HhhHHHHhcCCcEEEEEEECCCHHHH-HHHHHH
Confidence 00000111111 1235789999996442 45677889999999999986653211 112222
Q ss_pred HH---HhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 196 SR---EVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 196 ~~---~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
.. ...+.+.+.++|.||.|+.....-..+.........+.+|+.++.....++++...
T Consensus 95 ~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 95 VSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred HHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 22 33445689999999999865432111111111222345677777776655554433
No 133
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.19 E-value=1.4e-10 Score=110.39 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=63.4
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH----HHHHHHhCCCCCceEEEeec
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA----IKISREVDPTGERTFGVLTK 212 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~----l~l~~~~~~~~~rti~VltK 212 (610)
.+.++||||..+. ..+...+...+++++++++..+.... +.. ..+++.....+.|.++|.||
T Consensus 50 ~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~NK 115 (180)
T cd04137 50 HLEIVDTAGQDEY-------------SILPQKYSIGIHGYILVYSVTSRKSF-EVVKVIYDKILDMLGKESVPIVLVGNK 115 (180)
T ss_pred EEEEEECCChHhh-------------HHHHHHHHhhCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEEc
Confidence 5789999997542 33455778899999999987653211 111 12333333456899999999
Q ss_pred ccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
+|+..................+..++.+++.+..++......+...
T Consensus 116 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (180)
T cd04137 116 SDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEE 161 (180)
T ss_pred hhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9986433211111111122333457777777766666655554433
No 134
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.19 E-value=1.3e-10 Score=110.21 Aligned_cols=68 Identities=15% Similarity=0.261 Sum_probs=45.4
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH-HHHHh---CCCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK-ISREV---DPTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~-l~~~~---~~~~~rti~Vlt 211 (610)
..+.++||||.... ..+...|++.+|++|+|++.++.+.. ..... +...+ ...+.|.++|+|
T Consensus 59 ~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~vi~V~D~s~~~~~-~~~~~~l~~~~~~~~~~~~p~viv~N 124 (174)
T cd04153 59 IRFLMWDIGGQESL-------------RSSWNTYYTNTDAVILVIDSTDRERL-PLTKEELYKMLAHEDLRKAVLLVLAN 124 (174)
T ss_pred eEEEEEECCCCHHH-------------HHHHHHHhhcCCEEEEEEECCCHHHH-HHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 46889999997542 45567788999999999987653211 11111 22222 123589999999
Q ss_pred cccCCC
Q 007263 212 KIDLMD 217 (610)
Q Consensus 212 K~D~~~ 217 (610)
|+|+..
T Consensus 125 K~Dl~~ 130 (174)
T cd04153 125 KQDLKG 130 (174)
T ss_pred CCCCCC
Confidence 999865
No 135
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.19 E-value=1.4e-10 Score=109.20 Aligned_cols=70 Identities=16% Similarity=0.305 Sum_probs=48.5
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHh----CCCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV----DPTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~----~~~~~rti~Vlt 211 (610)
..+.++||||... .+.+...|++.+|++|+|+++++.+ .-..+..+...+ ...+.|+++|+|
T Consensus 43 ~~~~i~D~~G~~~-------------~~~~~~~~~~~a~~ii~V~D~s~~~-s~~~~~~~l~~l~~~~~~~~~piliv~N 108 (167)
T cd04161 43 YEVCIFDLGGGAN-------------FRGIWVNYYAEAHGLVFVVDSSDDD-RVQEVKEILRELLQHPRVSGKPILVLAN 108 (167)
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHHcCCCEEEEEEECCchh-HHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence 4688999999643 2567789999999999999877543 112222222222 124789999999
Q ss_pred cccCCCCC
Q 007263 212 KIDLMDKG 219 (610)
Q Consensus 212 K~D~~~~~ 219 (610)
|.|+.+..
T Consensus 109 K~Dl~~~~ 116 (167)
T cd04161 109 KQDKKNAL 116 (167)
T ss_pred CCCCcCCC
Confidence 99986543
No 136
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.19 E-value=9.2e-11 Score=110.59 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=56.8
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHH---H-hCCCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR---E-VDPTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~---~-~~~~~~rti~Vlt 211 (610)
..+.++||||..+.. ..+...|++++|++|+|++..+.+.. +....+.. . ....+.|+++|.|
T Consensus 51 ~~~~i~Dt~G~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~iiv~n 117 (170)
T cd04115 51 IKVQLWDTAGQERFR------------KSMVQHYYRNVHAVVFVYDVTNMASF-HSLPSWIEECEQHSLPNEVPRILVGN 117 (170)
T ss_pred EEEEEEeCCChHHHH------------HhhHHHhhcCCCEEEEEEECCCHHHH-HhHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 368899999964320 23567889999999999987653211 12222222 2 2234689999999
Q ss_pred cccCCCCCCcHHHHHcCcccccCCCeeEeeeCC
Q 007263 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRS 244 (610)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 244 (610)
|+|+........+...........+|+.+++.+
T Consensus 118 K~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 118 KCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred CccchhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence 999865432111111111222346677777665
No 137
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.18 E-value=2.1e-11 Score=117.13 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=48.3
Q ss_pred CCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeec
Q 007263 133 PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTK 212 (610)
Q Consensus 133 ~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK 212 (610)
.....++|+||||..+. ...+...+..+|++|+||++.. +. .......+..+...+.|.|+|+||
T Consensus 67 ~~~~~i~~iDtPG~~~f-------------~~~~~~~~~~~D~ailvVda~~-g~-~~~~~~~l~~~~~~~~p~ivvlNK 131 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDF-------------IKEMIRGLRQADIAILVVDAND-GI-QPQTEEHLKILRELGIPIIVVLNK 131 (188)
T ss_dssp ESSEEEEEEEESSSHHH-------------HHHHHHHHTTSSEEEEEEETTT-BS-THHHHHHHHHHHHTT-SEEEEEET
T ss_pred ccccceeecccccccce-------------eecccceecccccceeeeeccc-cc-ccccccccccccccccceEEeeee
Confidence 44567999999996432 2334556899999999997653 22 334444555555567889999999
Q ss_pred ccCC
Q 007263 213 IDLM 216 (610)
Q Consensus 213 ~D~~ 216 (610)
+|+.
T Consensus 132 ~D~~ 135 (188)
T PF00009_consen 132 MDLI 135 (188)
T ss_dssp CTSS
T ss_pred ccch
Confidence 9998
No 138
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.18 E-value=1.6e-10 Score=108.79 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=47.2
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHh-C---CCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV-D---PTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~-~---~~~~rti~Vlt 211 (610)
..+.++||||..+. +.+...|++++|++|+|++.++... -......+..+ . ..+.|+++|.|
T Consensus 53 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~a~~ii~v~D~t~~~s-~~~~~~~~~~~~~~~~~~~~piilv~N 118 (168)
T cd04149 53 VKFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVVDSADRDR-IDEARQELHRIINDREMRDALLLVFAN 118 (168)
T ss_pred EEEEEEECCCCHHH-------------HHHHHHHhccCCEEEEEEeCCchhh-HHHHHHHHHHHhcCHhhcCCcEEEEEE
Confidence 46899999997542 5566789999999999999765321 12222222222 1 23589999999
Q ss_pred cccCCCC
Q 007263 212 KIDLMDK 218 (610)
Q Consensus 212 K~D~~~~ 218 (610)
|+|+.+.
T Consensus 119 K~Dl~~~ 125 (168)
T cd04149 119 KQDLPDA 125 (168)
T ss_pred CcCCccC
Confidence 9998643
No 139
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.18 E-value=3.5e-10 Score=108.55 Aligned_cols=115 Identities=17% Similarity=0.279 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
.+-++|+++|.+|||||||+++|.+..+ . ...+|..|..
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~-~--~~~~T~~~~~-------------------------------------- 55 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRL-A--QHVPTLHPTS-------------------------------------- 55 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC-c--ccCCccCcce--------------------------------------
Confidence 3568999999999999999999998754 1 1112222210
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~ 191 (610)
..+.+ +...+.++||||.... +.+...|++.+|.+++|++..+.......
T Consensus 56 --------------~~i~~---~~~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~iilV~D~~~~~s~~~~ 105 (190)
T cd00879 56 --------------EELTI---GNIKFKTFDLGGHEQA-------------RRLWKDYFPEVDGIVFLVDAADPERFQES 105 (190)
T ss_pred --------------EEEEE---CCEEEEEEECCCCHHH-------------HHHHHHHhccCCEEEEEEECCcHHHHHHH
Confidence 01111 1235789999995431 45677899999999999987653211111
Q ss_pred HHHHH---HHhCCCCCceEEEeecccCCC
Q 007263 192 AIKIS---REVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 192 ~l~l~---~~~~~~~~rti~VltK~D~~~ 217 (610)
...+. +.....+.|+++|+||+|+..
T Consensus 106 ~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 106 KEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 11122 222234689999999999864
No 140
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.17 E-value=2.1e-10 Score=108.02 Aligned_cols=150 Identities=15% Similarity=0.257 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..-+|+|+|++++|||||++++++..+-+......+ ..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~-----~~------------------------------------- 41 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG-----VE------------------------------------- 41 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCcee-----eE-------------------------------------
Confidence 356899999999999999999998765221111000 00
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-cccH-
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS- 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~~~~- 190 (610)
+. ...+.+ ......+.|+||||..+ ...+...|++.+|++|++++..+.+ +..-
T Consensus 42 --------~~--~~~~~~-~~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 97 (170)
T cd04116 42 --------FL--NKDLEV-DGHFVTLQIWDTAGQER-------------FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLS 97 (170)
T ss_pred --------EE--EEEEEE-CCeEEEEEEEeCCChHH-------------HHHhHHHHhcCCCEEEEEEECCCHHHHHhHH
Confidence 00 001111 11223578999999543 2567778999999999988765432 1111
Q ss_pred HHH-HHHHHhC---CCCCceEEEeecccCCCCCCc---HHHHHcCcccccC-CCeeEeeeCChhhhhccc
Q 007263 191 DAI-KISREVD---PTGERTFGVLTKIDLMDKGTD---AADILEGKSYRLK-FPWIGVVNRSQADINKNV 252 (610)
Q Consensus 191 ~~l-~l~~~~~---~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~ 252 (610)
... .+..... +.+.|+++|.||.|+...... ..++.. ..+ ..|+.+++.+..++.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~~ 163 (170)
T cd04116 98 NWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDATNVAAAF 163 (170)
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCCCHHHHH
Confidence 111 1122121 346799999999998633211 222222 122 256666666655554433
No 141
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.17 E-value=2.1e-10 Score=109.89 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=87.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+|+|+.++|||||++++.+..+ |.. ..|+...
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~~~-----~~~t~~~---------------------------------------- 35 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-PEE-----YVPTVFE---------------------------------------- 35 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-CCC-----CCCeeee----------------------------------------
Confidence 699999999999999999998764 322 1121110
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l 195 (610)
.+ ...+...+.....+.|+||||..+. ..+...|++.+|++|+|++..+......-...+
T Consensus 36 ----~~---~~~i~~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~ 95 (187)
T cd04132 36 ----NY---VTNIQGPNGKIIELALWDTAGQEEY-------------DRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKW 95 (187)
T ss_pred ----ee---EEEEEecCCcEEEEEEEECCCchhH-------------HHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0001111112235789999995432 445566899999999999876532111111112
Q ss_pred HHHhC--CCCCceEEEeecccCCCCCCc---H-HHHHcCcccccCC-CeeEeeeCChhhhhccccHHHHHH
Q 007263 196 SREVD--PTGERTFGVLTKIDLMDKGTD---A-ADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIAARR 259 (610)
Q Consensus 196 ~~~~~--~~~~rti~VltK~D~~~~~~~---~-~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~~~~ 259 (610)
...+. ..+.|.|+|.||.|+.+.... . ...........+. .|+.++..+..++++....+....
T Consensus 96 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 96 FPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred HHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 22221 236899999999998653210 0 1111111122233 566666666666666555544433
No 142
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.17 E-value=1.2e-10 Score=109.17 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=57.5
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhC--CCCCceEEEeec
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVD--PTGERTFGVLTK 212 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~--~~~~rti~VltK 212 (610)
.+.++||||..... ......+++.+|++|+|++..+..... ......+.... ..+.|+++|.||
T Consensus 48 ~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK 115 (165)
T cd04146 48 SLEILDTAGQQQAD------------TEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNK 115 (165)
T ss_pred EEEEEECCCCcccc------------cchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 57799999986421 223566888999999999876532111 11122333332 346899999999
Q ss_pred ccCCCCCCcHHHHHcCcccccCCCeeEeeeCCh-hhhhccc
Q 007263 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQ-ADINKNV 252 (610)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~-~~~~~~~ 252 (610)
+|+.....-..+.........+.+|+.+++... .++++.+
T Consensus 116 ~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f 156 (165)
T cd04146 116 ADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVF 156 (165)
T ss_pred CchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHH
Confidence 998543211111111111223345666666544 3444443
No 143
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.15 E-value=2e-10 Score=110.60 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=42.8
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-cccHHHHHHHHHhCCCCCceEEEeecc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~~~~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
...+++|||||... .++. ....+..+|++++|+++.... ....+.+.++.. .+.+.++|+||+
T Consensus 67 ~~~~~i~DtpG~~~------------~~~~-~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~---~~~~~iiv~NK~ 130 (192)
T cd01889 67 NLQITLVDCPGHAS------------LIRT-IIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI---LCKKLIVVLNKI 130 (192)
T ss_pred CceEEEEECCCcHH------------HHHH-HHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH---cCCCEEEEEECc
Confidence 45799999999732 1122 334466789999999865421 111122333322 367999999999
Q ss_pred cCCCC
Q 007263 214 DLMDK 218 (610)
Q Consensus 214 D~~~~ 218 (610)
|+...
T Consensus 131 Dl~~~ 135 (192)
T cd01889 131 DLIPE 135 (192)
T ss_pred ccCCH
Confidence 99743
No 144
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.15 E-value=4.2e-10 Score=105.54 Aligned_cols=112 Identities=18% Similarity=0.276 Sum_probs=72.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
||+++|.+++|||||++++++..+ +... .|+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~~-----~pt------------------------------------------- 31 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LESV-----VPT------------------------------------------- 31 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-cccc-----ccc-------------------------------------------
Confidence 699999999999999999998754 2111 110
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l 195 (610)
.++. . +.+.. ....+.++||||-.+. +.+...|++.+|++|+|++.++.. .-.....+
T Consensus 32 ---~g~~--~--~~i~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~ii~V~D~t~~~-s~~~~~~~ 89 (164)
T cd04162 32 ---TGFN--S--VAIPT-QDAIMELLEIGGSQNL-------------RKYWKRYLSGSQGLIFVVDSADSE-RLPLARQE 89 (164)
T ss_pred ---CCcc--e--EEEee-CCeEEEEEECCCCcch-------------hHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHH
Confidence 0010 0 11222 2346899999997542 556778999999999999876532 11112222
Q ss_pred HHHh--CCCCCceEEEeecccCCCC
Q 007263 196 SREV--DPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 196 ~~~~--~~~~~rti~VltK~D~~~~ 218 (610)
...+ ...+.|+++|.||.|+...
T Consensus 90 l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 90 LHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 2222 1257999999999998654
No 145
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.15 E-value=9.8e-11 Score=110.60 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=44.9
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH---HHHHHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD---AIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~---~l~l~~~~~~~~~rti~VltK~ 213 (610)
.+.++||||.... ..+...+++.+|++|+|++..+......- .+...+... .+.|+++|.||+
T Consensus 47 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~ 112 (174)
T smart00174 47 ELGLWDTAGQEDY-------------DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNTPIILVGTKL 112 (174)
T ss_pred EEEEEECCCCccc-------------chhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCh
Confidence 5889999997543 33455678999999999987653211111 112222222 379999999999
Q ss_pred cCCCC
Q 007263 214 DLMDK 218 (610)
Q Consensus 214 D~~~~ 218 (610)
|+..+
T Consensus 113 Dl~~~ 117 (174)
T smart00174 113 DLRED 117 (174)
T ss_pred hhhhC
Confidence 98753
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.15 E-value=5e-10 Score=108.06 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=49.2
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
...+.|+||||..+. ..++..|++.+|++++|+++.+. .. .....+.+.+...+.|.++|+||+|
T Consensus 64 ~~~~~l~DtpG~~~~-------------~~~~~~~~~~~d~~ilV~d~~~~-~~-~~~~~~~~~~~~~~~p~iiv~NK~D 128 (194)
T cd01891 64 DTKINIVDTPGHADF-------------GGEVERVLSMVDGVLLLVDASEG-PM-PQTRFVLKKALELGLKPIVVINKID 128 (194)
T ss_pred CEEEEEEECCCcHHH-------------HHHHHHHHHhcCEEEEEEECCCC-cc-HHHHHHHHHHHHcCCCEEEEEECCC
Confidence 457899999997542 45678899999999999987642 21 2222234444445789999999999
Q ss_pred CCCC
Q 007263 215 LMDK 218 (610)
Q Consensus 215 ~~~~ 218 (610)
+...
T Consensus 129 l~~~ 132 (194)
T cd01891 129 RPDA 132 (194)
T ss_pred CCCC
Confidence 9743
No 147
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.15 E-value=2.5e-10 Score=109.62 Aligned_cols=108 Identities=23% Similarity=0.206 Sum_probs=68.0
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.|+||||..+. ..+...|++.+|++|||++..+...... ..+..+....+ +.+.|+|.||.
T Consensus 55 ~~l~iwDt~G~~~~-------------~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~ 120 (189)
T cd04121 55 VKLQLWDTSGQGRF-------------CTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRL 120 (189)
T ss_pred EEEEEEeCCCcHHH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECc
Confidence 46889999997553 5677889999999999998765321111 11222233233 68999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
|+.....-..+..+......+..|+.+++....++++.+..+..
T Consensus 121 DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 121 HLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred cchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99643211111111112234457888888888777776665544
No 148
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.14 E-value=2e-10 Score=113.12 Aligned_cols=107 Identities=12% Similarity=0.135 Sum_probs=64.8
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.++||||..+. ..+...|++.+|++|+|++..+.+.... ..+..++... .+.++++|.||+
T Consensus 62 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~ 127 (219)
T PLN03071 62 IRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127 (219)
T ss_pred EEEEEEECCCchhh-------------hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEch
Confidence 46889999997553 4556778999999999998775432111 1122222232 368999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
|+.........+ . .....+..|+.+++.+..++++.+..+...
T Consensus 128 Dl~~~~v~~~~~-~-~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~ 170 (219)
T PLN03071 128 DVKNRQVKAKQV-T-FHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (219)
T ss_pred hhhhccCCHHHH-H-HHHhcCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 986432111111 1 111233567777777777666666554433
No 149
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.14 E-value=1.8e-10 Score=119.61 Aligned_cols=127 Identities=29% Similarity=0.439 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCC-----CcccccccccccEEEEEEe
Q 007263 4 LISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDF-----LPRGSGIVTRRPLVLQLHK 78 (610)
Q Consensus 4 l~~~~~~lq~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~-----lP~~~~~~Tr~p~~~~l~~ 78 (610)
|...+.++++.+..+... --.|+|+|+.|+|||||||||-|..- -|+|..-+|..|
T Consensus 17 ~~~~~s~i~~~l~~~~~~------------~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~------- 77 (376)
T PF05049_consen 17 LQEVVSKIREALKDIDNA------------PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP------- 77 (376)
T ss_dssp HHHHHHHHHHHHHHHHH--------------EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS--------
T ss_pred HHHHHHHHHHHHHHhhcC------------ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC-------
Confidence 455667777777666642 23899999999999999999988531 111111111111
Q ss_pred cCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCch
Q 007263 79 LEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSI 158 (610)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~ 158 (610)
-....|..|+++|||+||+....-.
T Consensus 78 -------------------------------------------------~~Y~~p~~pnv~lWDlPG~gt~~f~------ 102 (376)
T PF05049_consen 78 -------------------------------------------------TPYPHPKFPNVTLWDLPGIGTPNFP------ 102 (376)
T ss_dssp -------------------------------------------------EEEE-SS-TTEEEEEE--GGGSS--------
T ss_pred -------------------------------------------------eeCCCCCCCCCeEEeCCCCCCCCCC------
Confidence 1145688899999999999654211
Q ss_pred HHHHHHHHHHH-----hcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 159 VQDIENMVRSY-----IEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 159 ~~~i~~~~~~y-----i~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
...| +..-|.+|++.+ . .+ +.....+++.+...|++.++|-||+|.
T Consensus 103 -------~~~Yl~~~~~~~yD~fiii~s-~--rf-~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 103 -------PEEYLKEVKFYRYDFFIIISS-E--RF-TENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp -------HHHHHHHTTGGG-SEEEEEES-S--S---HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred -------HHHHHHHccccccCEEEEEeC-C--CC-chhhHHHHHHHHHcCCcEEEEEecccc
Confidence 2333 456787766542 2 23 345566899999999999999999995
No 150
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.14 E-value=1.8e-10 Score=112.51 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=44.0
Q ss_pred CCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCC-CceEEEee
Q 007263 133 PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTG-ERTFGVLT 211 (610)
Q Consensus 133 ~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~-~rti~Vlt 211 (610)
.+...+.|+||||..+. ...+..++..+|++|+|+++... .. .........+...+ .++|+|+|
T Consensus 74 ~~~~~~~liDTpG~~~~-------------~~~~~~~~~~ad~~llVvD~~~~-~~-~~~~~~~~~~~~~~~~~iIvviN 138 (208)
T cd04166 74 TPKRKFIIADTPGHEQY-------------TRNMVTGASTADLAILLVDARKG-VL-EQTRRHSYILSLLGIRHVVVAVN 138 (208)
T ss_pred cCCceEEEEECCcHHHH-------------HHHHHHhhhhCCEEEEEEECCCC-cc-HhHHHHHHHHHHcCCCcEEEEEE
Confidence 34567999999996331 12244578899999999986542 21 22222222222233 45788999
Q ss_pred cccCCCC
Q 007263 212 KIDLMDK 218 (610)
Q Consensus 212 K~D~~~~ 218 (610)
|+|+...
T Consensus 139 K~D~~~~ 145 (208)
T cd04166 139 KMDLVDY 145 (208)
T ss_pred chhcccC
Confidence 9998753
No 151
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.13 E-value=1.7e-10 Score=113.63 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=48.4
Q ss_pred CCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHh-cCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEee
Q 007263 133 PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI-EKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLT 211 (610)
Q Consensus 133 ~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi-~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~Vlt 211 (610)
.....++||||||..+. .+.+..... ..+|.+++++++.. +. ......++..+...+.|.++|+|
T Consensus 81 ~~~~~i~liDtpG~~~~------------~~~~~~~~~~~~~D~~llVvda~~-g~-~~~d~~~l~~l~~~~ip~ivvvN 146 (224)
T cd04165 81 KSSKLVTFIDLAGHERY------------LKTTLFGLTGYAPDYAMLVVAANA-GI-IGMTKEHLGLALALNIPVFVVVT 146 (224)
T ss_pred eCCcEEEEEECCCcHHH------------HHHHHHhhcccCCCEEEEEEECCC-CC-cHHHHHHHHHHHHcCCCEEEEEE
Confidence 34457999999996442 233333322 36899988887543 33 34455566666677899999999
Q ss_pred cccCCCC
Q 007263 212 KIDLMDK 218 (610)
Q Consensus 212 K~D~~~~ 218 (610)
|+|+.++
T Consensus 147 K~D~~~~ 153 (224)
T cd04165 147 KIDLAPA 153 (224)
T ss_pred CccccCH
Confidence 9998754
No 152
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.12 E-value=2.9e-10 Score=108.54 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=45.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.++||+|-.+. ..+...|++++|++++|++..+.+.... ..+..++...+...+ |+|.||+
T Consensus 49 ~~l~iwDt~G~~~~-------------~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~ 114 (182)
T cd04128 49 ITFSIWDLGGQREF-------------INMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKY 114 (182)
T ss_pred EEEEEEeCCCchhH-------------HHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEch
Confidence 36889999997542 4567789999999999998765432111 223333344444455 7899999
Q ss_pred cCCC
Q 007263 214 DLMD 217 (610)
Q Consensus 214 D~~~ 217 (610)
|+..
T Consensus 115 Dl~~ 118 (182)
T cd04128 115 DLFA 118 (182)
T ss_pred hccc
Confidence 9863
No 153
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.12 E-value=2.2e-10 Score=107.70 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=62.3
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.++||||.... ..+...++..+|++|+|++..+..... ...+..+....+ +.|.++|.||+
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~ 114 (166)
T cd00877 49 IRFNVWDTAGQEKF-------------GGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKV 114 (166)
T ss_pred EEEEEEECCCChhh-------------ccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEch
Confidence 46789999997543 233456788999999999866432110 111222233333 69999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
|+........ ... ........|+.+++.+..+++.....+..
T Consensus 115 Dl~~~~~~~~-~~~-~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 115 DIKDRKVKAK-QIT-FHRKKNLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred hcccccCCHH-HHH-HHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence 9873322111 110 11122345777777777766665555543
No 154
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.12 E-value=6e-10 Score=105.08 Aligned_cols=115 Identities=22% Similarity=0.388 Sum_probs=72.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.-.+|+++|.+|+|||||+++|.|..+ +. ..|
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~-~~------~~~----------------------------------------- 44 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI-SH------ITP----------------------------------------- 44 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC-cc------cCC-----------------------------------------
Confidence 357899999999999999999999754 10 111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+.++.... + .. ...++.++|+||.... ..++..+++.+|+++++++..+........
T Consensus 45 -----t~g~~~~~--i--~~-~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~ 101 (173)
T cd04155 45 -----TQGFNIKT--V--QS-DGFKLNVWDIGGQRAI-------------RPYWRNYFENTDCLIYVIDSADKKRLEEAG 101 (173)
T ss_pred -----CCCcceEE--E--EE-CCEEEEEEECCCCHHH-------------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHH
Confidence 00011111 1 11 1246889999996432 456778889999999999876532111111
Q ss_pred H---HHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 I---KISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l---~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
. .+.+.....+.|+++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 102 AELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 1 1222222346899999999998654
No 155
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.12 E-value=6.8e-10 Score=105.31 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=47.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHh-C---CCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV-D---PTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~-~---~~~~rti~Vlt 211 (610)
..+.|+||||..+. ..+...|++++|++|+|++.++.+.. .++......+ . ..+.|+++|.|
T Consensus 57 ~~l~l~D~~G~~~~-------------~~~~~~~~~~ad~ii~v~D~t~~~s~-~~~~~~l~~~~~~~~~~~~piilv~N 122 (175)
T smart00177 57 ISFTVWDVGGQDKI-------------RPLWRHYYTNTQGLIFVVDSNDRDRI-DEAREELHRMLNEDELRDAVILVFAN 122 (175)
T ss_pred EEEEEEECCCChhh-------------HHHHHHHhCCCCEEEEEEECCCHHHH-HHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence 46889999997542 56778899999999999987754321 1222222222 1 23579999999
Q ss_pred cccCCCC
Q 007263 212 KIDLMDK 218 (610)
Q Consensus 212 K~D~~~~ 218 (610)
|.|+.+.
T Consensus 123 K~Dl~~~ 129 (175)
T smart00177 123 KQDLPDA 129 (175)
T ss_pred CcCcccC
Confidence 9998643
No 156
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.12 E-value=5.9e-10 Score=102.26 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=25.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~ 64 (610)
.+|+++|.+++|||||+|+|++.. +|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~ 30 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY 30 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC
Confidence 579999999999999999999987 45443
No 157
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.12 E-value=8.9e-10 Score=108.60 Aligned_cols=110 Identities=14% Similarity=0.055 Sum_probs=64.0
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc-CCCeEEEEeecCCCcccc--HHHHHHHHHhC-CCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE-KPNCIILAISPANQDLAT--SDAIKISREVD-PTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~-~~d~iil~v~~a~~d~~~--~~~l~l~~~~~-~~~~rti~Vlt 211 (610)
..+.++||||... .+...++. .+|++|+|++..+..... ...+..+.... ..+.|+|+|.|
T Consensus 50 ~~l~i~Dt~G~~~---------------~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~N 114 (221)
T cd04148 50 STLVVIDHWEQEM---------------WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGN 114 (221)
T ss_pred EEEEEEeCCCcch---------------HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 4688999999751 11223455 899999999876532111 11122222222 24689999999
Q ss_pred cccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHHH
Q 007263 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 260 (610)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (610)
|+|+........+.........+.+|+.+++....++++++..+.....
T Consensus 115 K~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 115 KSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred ChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 9998754321111111111223456888888887777777666554443
No 158
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.12 E-value=3.7e-10 Score=105.33 Aligned_cols=69 Identities=16% Similarity=0.301 Sum_probs=47.3
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHh-C---CCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV-D---PTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~-~---~~~~rti~Vlt 211 (610)
..+.|+||||..+. ..+...|++++|++|+|++..+.+.. ..+.+....+ . ....|.++|.|
T Consensus 44 ~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~~i~v~D~~~~~s~-~~~~~~~~~~~~~~~~~~~piilv~N 109 (159)
T cd04150 44 ISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRERI-GEAREELQRMLNEDELRDAVLLVFAN 109 (159)
T ss_pred EEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHHHH-HHHHHHHHHHHhcHHhcCCCEEEEEE
Confidence 46899999997542 55678899999999999987653311 2222222222 1 13579999999
Q ss_pred cccCCCC
Q 007263 212 KIDLMDK 218 (610)
Q Consensus 212 K~D~~~~ 218 (610)
|.|+.+.
T Consensus 110 K~Dl~~~ 116 (159)
T cd04150 110 KQDLPNA 116 (159)
T ss_pred CCCCCCC
Confidence 9998643
No 159
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.11 E-value=5.4e-10 Score=113.61 Aligned_cols=136 Identities=21% Similarity=0.320 Sum_probs=78.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccc-cccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT-RRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T-r~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
.|+|||..|+|||||+|+|+|..+.+.+..... ..+ .
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~------------------------------------------~ 43 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEH------------------------------------------I 43 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccc------------------------------------------c
Confidence 799999999999999999999987544322110 000 0
Q ss_pred cCCCCccccccEEEEEecCC-CCCcEEEeCCCCCccccC-CCCCchHHHHHHHHHHHh------------c--CCCeEEE
Q 007263 115 TGRTKQISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVE-GQPDSIVQDIENMVRSYI------------E--KPNCIIL 178 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~-~~~ltlvDtPGi~~~~~~-~q~~~~~~~i~~~~~~yi------------~--~~d~iil 178 (610)
..+..+... ...+...+ ...+++|||||+.+.... .+-+.+...+++....|+ . ++|++++
T Consensus 44 -~~T~~i~~~--~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly 120 (276)
T cd01850 44 -DKTVEIKSS--KAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLY 120 (276)
T ss_pred -CCceEEEEE--EEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEE
Confidence 000001111 11111111 136999999999765321 111222222333222322 2 3677888
Q ss_pred EeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 179 AISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 179 ~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
++++....+. ...+.+++.+.. +.++|.|+||+|++..
T Consensus 121 ~i~~~~~~l~-~~D~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 121 FIEPTGHGLK-PLDIEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred EEeCCCCCCC-HHHHHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 8877654443 334667777764 7899999999999753
No 160
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.11 E-value=8.1e-10 Score=105.51 Aligned_cols=69 Identities=17% Similarity=0.309 Sum_probs=46.5
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCC---CCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP---TGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~---~~~rti~VltK 212 (610)
..+.++||||..+. +.+...|++.+|++|+|++.++.+........+...+.. ...|+++|.||
T Consensus 61 ~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK 127 (182)
T PTZ00133 61 LKFTMWDVGGQDKL-------------RPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANK 127 (182)
T ss_pred EEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeC
Confidence 46899999997442 567788999999999999876533211111112222221 35789999999
Q ss_pred ccCCC
Q 007263 213 IDLMD 217 (610)
Q Consensus 213 ~D~~~ 217 (610)
.|+.+
T Consensus 128 ~Dl~~ 132 (182)
T PTZ00133 128 QDLPN 132 (182)
T ss_pred CCCCC
Confidence 99854
No 161
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.11 E-value=9.7e-10 Score=104.86 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=47.4
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHH-hC---CCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISRE-VD---PTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~-~~---~~~~rti~Vlt 211 (610)
..+.++||||..+ .+.+...|++++|++|+|++..+.+.. ..+...... +. ..+.|.++|.|
T Consensus 61 ~~~~i~D~~Gq~~-------------~~~~~~~~~~~a~~iI~V~D~s~~~s~-~~~~~~l~~~l~~~~~~~~piilv~N 126 (181)
T PLN00223 61 ISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFAN 126 (181)
T ss_pred EEEEEEECCCCHH-------------HHHHHHHHhccCCEEEEEEeCCcHHHH-HHHHHHHHHHhcCHhhCCCCEEEEEE
Confidence 4688999999533 266788899999999999987653311 122222222 22 23689999999
Q ss_pred cccCCCC
Q 007263 212 KIDLMDK 218 (610)
Q Consensus 212 K~D~~~~ 218 (610)
|.|+.+.
T Consensus 127 K~Dl~~~ 133 (181)
T PLN00223 127 KQDLPNA 133 (181)
T ss_pred CCCCCCC
Confidence 9998654
No 162
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.11 E-value=3.3e-10 Score=102.74 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=59.9
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH-H--HHHHHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA-I--KISREVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~-l--~l~~~~~~~~~rti~VltK 212 (610)
..++++|+||.... ......++..+|+++++++..+........ . .........+.++++|+||
T Consensus 45 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk 111 (157)
T cd00882 45 VKLQIWDTAGQERF-------------RSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNK 111 (157)
T ss_pred EEEEEEecCChHHH-------------HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEec
Confidence 46899999998653 223367889999999999876532211111 1 1233344568999999999
Q ss_pred ccCCCCCCcHHHH-HcCcccccCCCeeEeeeCChhhhh
Q 007263 213 IDLMDKGTDAADI-LEGKSYRLKFPWIGVVNRSQADIN 249 (610)
Q Consensus 213 ~D~~~~~~~~~~~-l~~~~~~l~~g~~~v~~~s~~~~~ 249 (610)
+|........... ..........+++.+++....++.
T Consensus 112 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 149 (157)
T cd00882 112 IDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVE 149 (157)
T ss_pred cccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChH
Confidence 9987654322111 111122234566666666554433
No 163
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.11 E-value=1.9e-10 Score=128.65 Aligned_cols=110 Identities=20% Similarity=0.302 Sum_probs=71.5
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc--CCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
.++.++||||..+..... .. +.+.+.|+. .+|.+++++++.+. +..+.+..++...+.|+++|+||+
T Consensus 41 ~~i~lvDtPG~~~~~~~s----~~---e~v~~~~l~~~~aDvvI~VvDat~l----er~l~l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTTFS----LE---EEVARDYLLNEKPDLVVNVVDASNL----ERNLYLTLQLLELGIPMILALNLV 109 (591)
T ss_pred eEEEEEECCCccccCccc----hH---HHHHHHHHhhcCCCEEEEEecCCcc----hhhHHHHHHHHhcCCCEEEEEehh
Confidence 358899999997653221 11 344555654 78999999987652 234455555556689999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
|+.++.....+ .+.....++.+++.+++++..++++..+...+
T Consensus 110 Dl~~~~~i~~d-~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 110 DEAEKKGIRID-EEKLEERLGVPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred HHHHhCCChhh-HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 98643321111 11123345678899999988888877766554
No 164
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.11 E-value=3.3e-10 Score=107.50 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=46.1
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-cH--HHHHHHHHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TS--DAIKISREVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~~--~~l~l~~~~~~~~~rti~VltK 212 (610)
..+.|+||||..+. ..+...|++++|++|||++..+.+.. .- ..+...+...+ +.|+|+|.||
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK 114 (175)
T cd01874 49 YTLGLFDTAGQEDY-------------DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQ 114 (175)
T ss_pred EEEEEEECCCccch-------------hhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 36889999998653 34456689999999999987653311 11 11222333233 5899999999
Q ss_pred ccCCCC
Q 007263 213 IDLMDK 218 (610)
Q Consensus 213 ~D~~~~ 218 (610)
.|+.+.
T Consensus 115 ~Dl~~~ 120 (175)
T cd01874 115 IDLRDD 120 (175)
T ss_pred HhhhhC
Confidence 998643
No 165
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.09 E-value=2.6e-09 Score=113.54 Aligned_cols=39 Identities=26% Similarity=0.253 Sum_probs=30.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEE
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLV 73 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~ 73 (610)
.+|++||.+|+|||||+|+|++..+-......||+-|+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999987633334457777744
No 166
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.09 E-value=6.6e-10 Score=123.67 Aligned_cols=119 Identities=18% Similarity=0.310 Sum_probs=77.0
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHH
Q 007263 30 LWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQD 109 (610)
Q Consensus 30 ~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 109 (610)
+..+.|.|+++|..++|||||+++|.+..+.+...+..|
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT----------------------------------------- 121 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGIT----------------------------------------- 121 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCcee-----------------------------------------
Confidence 345779999999999999999999998765221111111
Q ss_pred HhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc
Q 007263 110 ETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT 189 (610)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~ 189 (610)
..+.. ..+..++...++||||||..+. ..+...+...+|.+|||+++... ..
T Consensus 122 ---------~~ig~----~~v~~~~~~~i~~iDTPGhe~F-------------~~~r~rga~~aDiaILVVda~dg--v~ 173 (587)
T TIGR00487 122 ---------QHIGA----YHVENEDGKMITFLDTPGHEAF-------------TSMRARGAKVTDIVVLVVAADDG--VM 173 (587)
T ss_pred ---------ecceE----EEEEECCCcEEEEEECCCCcch-------------hhHHHhhhccCCEEEEEEECCCC--CC
Confidence 00000 0111122237899999997543 34556778899999999965432 22
Q ss_pred HHHHHHHHHhCCCCCceEEEeecccCCC
Q 007263 190 SDAIKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 190 ~~~l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
......++.....+.|+|+++||+|+..
T Consensus 174 ~qT~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 174 PQTIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred HhHHHHHHHHHHcCCCEEEEEECccccc
Confidence 3333444445556789999999999854
No 167
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.09 E-value=9.5e-10 Score=107.98 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=46.3
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~l~l~~~~~~~~~rti~VltK~ 213 (610)
.++.|+||||.... ..+...|++.+|++|+|++..+.+.... ..+..+......+.++|+|.||.
T Consensus 44 ~~l~iwDt~G~e~~-------------~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~ 110 (220)
T cd04126 44 YNISIWDTAGREQF-------------HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKL 110 (220)
T ss_pred EEEEEEeCCCcccc-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 35889999997543 4566788999999999998765321111 11111222334468899999999
Q ss_pred cCCC
Q 007263 214 DLMD 217 (610)
Q Consensus 214 D~~~ 217 (610)
|+.+
T Consensus 111 DL~~ 114 (220)
T cd04126 111 DLTE 114 (220)
T ss_pred cccc
Confidence 9975
No 168
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.09 E-value=5.4e-10 Score=126.16 Aligned_cols=122 Identities=16% Similarity=0.293 Sum_probs=78.4
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHH
Q 007263 30 LWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQD 109 (610)
Q Consensus 30 ~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 109 (610)
+..+.|.|+|+|..++|||||+++|.+..+. .+ +.+
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~-----e~~-------------------------------------- 275 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIA-QK-----EAG-------------------------------------- 275 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCc-cc-----cCC--------------------------------------
Confidence 3457899999999999999999999987641 11 111
Q ss_pred HhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc
Q 007263 110 ETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT 189 (610)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~ 189 (610)
|.+..+....+.+.. ......++||||||.... ..+...++..+|++|||+++.. .. .
T Consensus 276 ------GiTq~i~~~~v~~~~-~~~~~kItfiDTPGhe~F-------------~~mr~rg~~~aDiaILVVDA~d-Gv-~ 333 (742)
T CHL00189 276 ------GITQKIGAYEVEFEY-KDENQKIVFLDTPGHEAF-------------SSMRSRGANVTDIAILIIAADD-GV-K 333 (742)
T ss_pred ------ccccccceEEEEEEe-cCCceEEEEEECCcHHHH-------------HHHHHHHHHHCCEEEEEEECcC-CC-C
Confidence 111111111111111 112357999999996432 5566778899999999997543 21 2
Q ss_pred HHHHHHHHHhCCCCCceEEEeecccCCC
Q 007263 190 SDAIKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 190 ~~~l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
......++.+...+.|+|+|+||+|+..
T Consensus 334 ~QT~E~I~~~k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 334 PQTIEAINYIQAANVPIIVAINKIDKAN 361 (742)
T ss_pred hhhHHHHHHHHhcCceEEEEEECCCccc
Confidence 2333344445556799999999999875
No 169
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.09 E-value=6.2e-10 Score=104.92 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+.-+|+++|++|+|||||++++++..|-|.... +|-.+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~-~T~~~----------------------------------------- 40 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYS-PTIKP----------------------------------------- 40 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCC-CccCc-----------------------------------------
Confidence 456799999999999999999999875202211 11100
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
.+.... +.+. .....+.++|++|-... ..+...|++++|++|+|++..+.. .-...
T Consensus 41 -------~~~~~~--~~~~-~~~~~l~~~d~~g~~~~-------------~~~~~~~~~~~d~~llv~d~~~~~-s~~~~ 96 (169)
T cd01892 41 -------RYAVNT--VEVY-GQEKYLILREVGEDEVA-------------ILLNDAELAACDVACLVYDSSDPK-SFSYC 96 (169)
T ss_pred -------ceEEEE--EEEC-CeEEEEEEEecCCcccc-------------cccchhhhhcCCEEEEEEeCCCHH-HHHHH
Confidence 000001 1111 11235788999996543 334567789999999999865421 11122
Q ss_pred HHHHHHhC-CCCCceEEEeecccCCCC
Q 007263 193 IKISREVD-PTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~-~~~~rti~VltK~D~~~~ 218 (610)
..+...+. ..+.|+++|+||+|+.+.
T Consensus 97 ~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 97 AEVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred HHHHHHhccCCCCeEEEEEEccccccc
Confidence 23444442 336899999999998644
No 170
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.08 E-value=1.3e-09 Score=121.19 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=78.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+.|.|+++|.+++|||||+|+|.|..+.....|..|+..-...... +. ..
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~-~~-----------------------------~~ 52 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPM-DV-----------------------------IE 52 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeee-cc-----------------------------cc
Confidence 6799999999999999999999998764433343443210000000 00 00
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
...+. ... ..++. ...++++|+||||.... ..+...+++.+|+++||++..+. . ....
T Consensus 53 ~~~~~----~~~--~~~v~-~~~~~l~~iDTpG~e~f-------------~~l~~~~~~~aD~~IlVvD~~~g-~-~~qt 110 (590)
T TIGR00491 53 GICGD----LLK--KFKIR-LKIPGLLFIDTPGHEAF-------------TNLRKRGGALADLAILIVDINEG-F-KPQT 110 (590)
T ss_pred ccccc----ccc--ccccc-cccCcEEEEECCCcHhH-------------HHHHHHHHhhCCEEEEEEECCcC-C-CHhH
Confidence 00000 000 00011 12346999999996442 44566788999999999986542 1 1222
Q ss_pred HHHHHHhCCCCCceEEEeecccCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
...+..+...+.|.++|+||+|+.+
T Consensus 111 ~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 111 QEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHHcCCCEEEEEECCCccc
Confidence 3333333445789999999999974
No 171
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.06 E-value=1e-09 Score=103.68 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=68.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
.+|+|+|++++|||||++++.+..+ |.... +|-.+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~~~~~-~t~~~------------------------------------------- 36 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYV-PTVFE------------------------------------------- 36 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-Ccccc-------------------------------------------
Confidence 5799999999999999999998764 32111 11000
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-ccHH--
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSD-- 191 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~~~-- 191 (610)
.....+.+.+ ....+.++||||.... ..+...++.++|+++++++..+.+. .+-.
T Consensus 37 --------~~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~ 94 (175)
T cd01870 37 --------NYVADIEVDG-KQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 94 (175)
T ss_pred --------ceEEEEEECC-EEEEEEEEeCCCchhh-------------hhccccccCCCCEEEEEEECCCHHHHHHHHHH
Confidence 0000111111 1235889999997442 2223356789999998887654321 1111
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
....++... .+.|+++|.||.|+.+.
T Consensus 95 ~~~~~~~~~-~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 95 WTPEVKHFC-PNVPIILVGNKKDLRND 120 (175)
T ss_pred HHHHHHhhC-CCCCEEEEeeChhcccC
Confidence 111222222 36899999999998654
No 172
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.05 E-value=1.7e-09 Score=107.41 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
+|+++|.+|+|||||+|+|+|..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~ 24 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK 24 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999975
No 173
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.05 E-value=1.6e-09 Score=108.38 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=62.8
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHh------------CCCC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV------------DPTG 203 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~------------~~~~ 203 (610)
..+.|+||||.... ..+...|+..+|++|+|++..+.+.. .....+..++ ...+
T Consensus 48 ~~l~I~Dt~G~~~~-------------~~~~~~~~~~ad~iIlVfdv~~~~Sf-~~i~~~~~~I~~~k~~~~~~~~~~~~ 113 (247)
T cd04143 48 YQLDILDTSGNHPF-------------PAMRRLSILTGDVFILVFSLDNRESF-EEVCRLREQILETKSCLKNKTKENVK 113 (247)
T ss_pred EEEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhhcccccccccCCC
Confidence 46789999997542 34455678899999999987653311 1122222222 1236
Q ss_pred CceEEEeecccCCCCCC-cHHHHHcCcccccCCCeeEeeeCChhhhhccccHHH
Q 007263 204 ERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 204 ~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
.++|+|.||+|+..... ...++.+-........|+.+++.+..++++++..+.
T Consensus 114 ~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~ 167 (247)
T cd04143 114 IPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167 (247)
T ss_pred CcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 89999999999975322 111111100111234578888877777766555443
No 174
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.05 E-value=8.9e-10 Score=111.57 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=50.1
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
...++||||||..+. ...+..+++.+|++|+++++.. .. ......+++.+...+.|.++|+||+|
T Consensus 63 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVVDa~~-g~-~~~t~~~~~~~~~~~~p~ivviNK~D 127 (270)
T cd01886 63 DHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVFDAVA-GV-EPQTETVWRQADRYNVPRIAFVNKMD 127 (270)
T ss_pred CEEEEEEECCCcHHH-------------HHHHHHHHHHcCEEEEEEECCC-CC-CHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 457999999997542 2336788999999999997654 22 23334555656666889999999999
Q ss_pred CCC
Q 007263 215 LMD 217 (610)
Q Consensus 215 ~~~ 217 (610)
+..
T Consensus 128 ~~~ 130 (270)
T cd01886 128 RTG 130 (270)
T ss_pred CCC
Confidence 874
No 175
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.9e-10 Score=103.96 Aligned_cols=160 Identities=20% Similarity=0.237 Sum_probs=96.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..-.||++|+||+||+|+|+...--.| .+.. -|
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~f-d~~Y-----qA----------------------------------------- 53 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKF-DNTY-----QA----------------------------------------- 53 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhh-cccc-----cc-----------------------------------------
Confidence 456899999999999999999987655 1100 00
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
..+.+|-..... +.+. ...|.||||.|.-+. +.++-+|++++.++|+|.+-++..... ..
T Consensus 54 ---TIGiDFlskt~~--l~d~-~vrLQlWDTAGQERF-------------rslipsY~Rds~vaviVyDit~~~Sfe-~t 113 (221)
T KOG0094|consen 54 ---TIGIDFLSKTMY--LEDR-TVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVIVYDITDRNSFE-NT 113 (221)
T ss_pred ---eeeeEEEEEEEE--EcCc-EEEEEEEecccHHHH-------------hhhhhhhccCCeEEEEEEeccccchHH-HH
Confidence 011222223222 2222 346899999997654 889999999999999999877643221 22
Q ss_pred HHHHHHhC----CCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHH
Q 007263 193 IKISREVD----PTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 259 (610)
Q Consensus 193 l~l~~~~~----~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (610)
-+++..+. +.+..+++|-||.|+.++..-..+--......++--|..++.....++..++..+.+..
T Consensus 114 ~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 114 SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred HHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhc
Confidence 23333332 23467888999999997643111111112333444566666666666655554444433
No 176
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.04 E-value=7e-10 Score=106.90 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=47.6
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCc-eEEEeec
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTK 212 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~r-ti~VltK 212 (610)
+..+++||||||..+. ...+...+..+|++++|+++.. .. ......+++.+...+.+ .|+|+||
T Consensus 63 ~~~~i~~iDtPG~~~~-------------~~~~~~~~~~~D~~ilVvda~~-g~-~~~~~~~~~~~~~~~~~~iIvviNK 127 (195)
T cd01884 63 ANRHYAHVDCPGHADY-------------IKNMITGAAQMDGAILVVSATD-GP-MPQTREHLLLARQVGVPYIVVFLNK 127 (195)
T ss_pred CCeEEEEEECcCHHHH-------------HHHHHHHhhhCCEEEEEEECCC-CC-cHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4557999999997431 2224556788999999998653 33 23344455555556665 7899999
Q ss_pred ccCCCC
Q 007263 213 IDLMDK 218 (610)
Q Consensus 213 ~D~~~~ 218 (610)
+|+.++
T Consensus 128 ~D~~~~ 133 (195)
T cd01884 128 ADMVDD 133 (195)
T ss_pred CCCCCc
Confidence 999743
No 177
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.04 E-value=2e-09 Score=108.87 Aligned_cols=136 Identities=14% Similarity=0.267 Sum_probs=79.1
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
..|+++|..++|||||+|+|+... |...+... +.-.. ..+....|+.... +.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~------g~i~~~g~-v~~~~-------------~~~~t~~D~~~~e--------~~ 54 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFG------GAIREAGA-VKARK-------------SRKHATSDWMEIE--------KQ 54 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhc------CCcccCce-ecccc-------------cCCCccCCCcHHH--------Hh
Confidence 469999999999999999998653 22222221 00000 0011122222111 11
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~ 194 (610)
.| ..+......++ .....+.||||||..+. ...+..+++.+|++|+|+++.. ... .....
T Consensus 55 rg--~si~~~~~~~~---~~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvda~~-g~~-~~~~~ 114 (267)
T cd04169 55 RG--ISVTSSVMQFE---YRDCVINLLDTPGHEDF-------------SEDTYRTLTAVDSAVMVIDAAK-GVE-PQTRK 114 (267)
T ss_pred CC--CCeEEEEEEEe---eCCEEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEEECCC-Ccc-HHHHH
Confidence 12 22222323322 23457999999997543 2336678899999999998754 222 22334
Q ss_pred HHHHhCCCCCceEEEeecccCCCC
Q 007263 195 ISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
+.+.....+.|+++++||+|....
T Consensus 115 i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 115 LFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHhcCCCEEEEEECCccCCC
Confidence 445555567899999999997644
No 178
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.04 E-value=7.5e-10 Score=104.66 Aligned_cols=69 Identities=20% Similarity=0.176 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---HHHHHHHHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~---~~l~l~~~~~~~~~rti~VltK 212 (610)
..+.++||||.... ..+...|++.+|++|+|++..+...... ..+...+.. ..+.++++|.||
T Consensus 48 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK 113 (173)
T cd04130 48 VRLQLCDTAGQDEF-------------DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQ 113 (173)
T ss_pred EEEEEEECCCChhh-------------ccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeC
Confidence 35789999998543 2334558899999999998765321111 112222222 236899999999
Q ss_pred ccCCCC
Q 007263 213 IDLMDK 218 (610)
Q Consensus 213 ~D~~~~ 218 (610)
+|+...
T Consensus 114 ~Dl~~~ 119 (173)
T cd04130 114 ADLRTD 119 (173)
T ss_pred hhhccC
Confidence 998643
No 179
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.04 E-value=1e-09 Score=109.18 Aligned_cols=68 Identities=22% Similarity=0.207 Sum_probs=49.8
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
...++||||||..+. ...+..+++.+|++|+++++... . ......+.+.+...+.|.++|+||+|
T Consensus 63 ~~~i~liDTPG~~~f-------------~~~~~~~l~~aD~~IlVvd~~~g-~-~~~~~~~~~~~~~~~~P~iivvNK~D 127 (237)
T cd04168 63 DTKVNLIDTPGHMDF-------------IAEVERSLSVLDGAILVISAVEG-V-QAQTRILWRLLRKLNIPTIIFVNKID 127 (237)
T ss_pred CEEEEEEeCCCccch-------------HHHHHHHHHHhCeEEEEEeCCCC-C-CHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 457999999998653 33467788999999999986542 2 23333445555556899999999999
Q ss_pred CCC
Q 007263 215 LMD 217 (610)
Q Consensus 215 ~~~ 217 (610)
+..
T Consensus 128 ~~~ 130 (237)
T cd04168 128 RAG 130 (237)
T ss_pred ccC
Confidence 874
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.04 E-value=1.5e-09 Score=123.78 Aligned_cols=117 Identities=19% Similarity=0.315 Sum_probs=76.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 007263 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (610)
Q Consensus 31 ~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (610)
..+.|.|+|+|..++|||||+++|.+..+. .+. .+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e-----~~--------------------------------------- 321 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGE-----AG--------------------------------------- 321 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccc-----cC---------------------------------------
Confidence 457899999999999999999999876641 110 00
Q ss_pred hhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH
Q 007263 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (610)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~ 190 (610)
|.+..+.. ..+.+ . ...++||||||.... ..+...++..+|++|||+++... ...
T Consensus 322 -----GIT~~iga--~~v~~--~-~~~ItfiDTPGhe~F-------------~~m~~rga~~aDiaILVVdAddG--v~~ 376 (787)
T PRK05306 322 -----GITQHIGA--YQVET--N-GGKITFLDTPGHEAF-------------TAMRARGAQVTDIVVLVVAADDG--VMP 376 (787)
T ss_pred -----ceeeeccE--EEEEE--C-CEEEEEEECCCCccc-------------hhHHHhhhhhCCEEEEEEECCCC--CCH
Confidence 10000000 11111 1 246899999997553 44566788899999999965432 122
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
.....++.+...+.|+|+|+||+|+..
T Consensus 377 qT~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 377 QTIEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred hHHHHHHHHHhcCCcEEEEEECccccc
Confidence 333344445556789999999999954
No 181
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.03 E-value=1.8e-09 Score=117.61 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=79.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
.+|+|+|.+|+||||++|+|+|...+..+.. .+|....++.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~-------------------------------------- 160 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE-------------------------------------- 160 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEE--------------------------------------
Confidence 4799999999999999999999876555431 2222221111
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc--CCCeEEEEeecCC--Ccccc
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPAN--QDLAT 189 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~d~iil~v~~a~--~d~~~ 189 (610)
. ..+...+.+|||||+...... ......+...+..++. .+|++|+|..-.. .+...
T Consensus 161 --------------~---~idG~~L~VIDTPGL~dt~~d---q~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD 220 (763)
T TIGR00993 161 --------------G---LVQGVKIRVIDTPGLKSSASD---QSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSND 220 (763)
T ss_pred --------------E---EECCceEEEEECCCCCccccc---hHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHH
Confidence 0 012346899999999875322 2244455666777776 4787777654322 22223
Q ss_pred HHHHHHHHHhCCC--CCceEEEeecccCCCC
Q 007263 190 SDAIKISREVDPT--GERTFGVLTKIDLMDK 218 (610)
Q Consensus 190 ~~~l~l~~~~~~~--~~rti~VltK~D~~~~ 218 (610)
..+++.+..+-.. -.++|+|+|+.|..++
T Consensus 221 ~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 221 LPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 3445544444332 4899999999999964
No 182
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.02 E-value=1.2e-09 Score=122.22 Aligned_cols=107 Identities=16% Similarity=0.124 Sum_probs=65.4
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-cccHHHHHHHHHhCCCCCc-eEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISREVDPTGER-TFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~~~~~~l~l~~~~~~~~~r-ti~VltK~ 213 (610)
..++||||||..+ . ......++..+|.+|+|+++.+.. ..+.+.+.+++ ..+.+ .|+|+||+
T Consensus 50 ~~v~~iDtPGhe~------------f-~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~---~lgi~~iIVVlNK~ 113 (581)
T TIGR00475 50 YRLGFIDVPGHEK------------F-ISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLD---LLGIPHTIVVITKA 113 (581)
T ss_pred EEEEEEECCCHHH------------H-HHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHH---HcCCCeEEEEEECC
Confidence 5689999999532 1 233456778999999999865421 12223333443 34666 99999999
Q ss_pred cCCCCCC------cHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 214 DLMDKGT------DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 214 D~~~~~~------~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
|+.+... +..+++.+........++.+++.+..+++.+...+...
T Consensus 114 Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 114 DRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNL 164 (581)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHH
Confidence 9986431 11222222111113567888888887777766655443
No 183
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.02 E-value=2.1e-09 Score=105.53 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=50.4
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
...+.||||||..+. ...+..+++.+|++|+|++.... . ......+++.+...+.+.++|+||+|
T Consensus 72 ~~~i~iiDTPG~~~f-------------~~~~~~~l~~aD~~ilVvD~~~g-~-~~~t~~~l~~~~~~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVDF-------------SSEVTAALRLCDGALVVVDAVEG-V-CVQTETVLRQALKERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCcccc-------------HHHHHHHHHhcCeeEEEEECCCC-C-CHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 346899999998764 44578889999999999986542 2 23344455555556789999999999
Q ss_pred CC
Q 007263 215 LM 216 (610)
Q Consensus 215 ~~ 216 (610)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 86
No 184
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.02 E-value=7.8e-10 Score=106.28 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=45.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-cHH--HHHHHHHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TSD--AIKISREVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~~~--~l~l~~~~~~~~~rti~VltK 212 (610)
..+.|+||||.... ..+...|++.+|++|+|++..+.+.. +.. .+..++... .+.|+++|.||
T Consensus 48 ~~l~i~Dt~G~~~~-------------~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK 113 (189)
T cd04134 48 IELSLWDTAGQEEF-------------DRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC-PGVKLVLVALK 113 (189)
T ss_pred EEEEEEECCCChhc-------------cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 36889999997442 33445678999999999876654321 111 222233322 36899999999
Q ss_pred ccCCCC
Q 007263 213 IDLMDK 218 (610)
Q Consensus 213 ~D~~~~ 218 (610)
.|+.+.
T Consensus 114 ~Dl~~~ 119 (189)
T cd04134 114 CDLREA 119 (189)
T ss_pred hhhccC
Confidence 999754
No 185
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.02 E-value=1.6e-09 Score=105.33 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=59.3
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc--ccHHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~--~~~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..++||||||..+ ....+..++..+|.+++|+++..... .+.+.+..+... ...++++|+||+
T Consensus 83 ~~i~~iDtPG~~~-------------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~ 147 (203)
T cd01888 83 RHVSFVDCPGHEI-------------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKI 147 (203)
T ss_pred cEEEEEECCChHH-------------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEch
Confidence 5689999999421 13335566778899999998764222 222333333322 124689999999
Q ss_pred cCCCCCC--cHHHHHcCcc---cccCCCeeEeeeCChhhhhccccHHH
Q 007263 214 DLMDKGT--DAADILEGKS---YRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 214 D~~~~~~--~~~~~l~~~~---~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
|+.+... ...+.++... ......++.+++.+..+++.+...+.
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~ 195 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIV 195 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHH
Confidence 9975321 0111111110 01234567777777666665554443
No 186
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.00 E-value=1.6e-09 Score=102.79 Aligned_cols=115 Identities=24% Similarity=0.240 Sum_probs=73.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+|+|+.++|||||+..++...| +....+ |-..
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~-Ti~~-------------------------------------------- 36 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIP-TVFD-------------------------------------------- 36 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCC-ccee--------------------------------------------
Confidence 589999999999999999998765 322111 1100
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---HH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DA 192 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~---~~ 192 (610)
.+. ..+.+. .....+.|+||+|..+. ..+...|++++|++|||++..+...-.. ..
T Consensus 37 ----~~~---~~~~~~-~~~v~l~i~Dt~G~~~~-------------~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w 95 (176)
T cd04133 37 ----NFS---ANVSVD-GNTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFVLAFSLISRASYENVLKKW 95 (176)
T ss_pred ----eeE---EEEEEC-CEEEEEEEEECCCCccc-------------cccchhhcCCCcEEEEEEEcCCHHHHHHHHHHH
Confidence 000 111121 12346899999997654 4456679999999999998765332111 12
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
+..++...+ +.++++|.||+|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (176)
T cd04133 96 VPELRHYAP-NVPIVLVGTKLDLRDD 120 (176)
T ss_pred HHHHHHhCC-CCCEEEEEeChhhccC
Confidence 222333333 6899999999999653
No 187
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.00 E-value=1e-09 Score=102.23 Aligned_cols=151 Identities=19% Similarity=0.286 Sum_probs=90.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+|+|+.++|||||++++.+..| |.... .|-..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~-~t~~~-------------------------------------------- 34 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYI-PTIGI-------------------------------------------- 34 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSE-TTSSE--------------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccc-ccccc--------------------------------------------
Confidence 589999999999999999998765 32211 11100
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAI 193 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l 193 (610)
......+.+. .....+.|+|+||.... ..+...+++++|++|+|++..+.+.-. ...+
T Consensus 35 ------~~~~~~~~~~-~~~~~l~i~D~~g~~~~-------------~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~ 94 (162)
T PF00071_consen 35 ------DSYSKEVSID-GKPVNLEIWDTSGQERF-------------DSLRDIFYRNSDAIIIVFDVTDEESFENLKKWL 94 (162)
T ss_dssp ------EEEEEEEEET-TEEEEEEEEEETTSGGG-------------HHHHHHHHTTESEEEEEEETTBHHHHHTHHHHH
T ss_pred ------cccccccccc-ccccccccccccccccc-------------ccccccccccccccccccccccccccccccccc
Confidence 0001111111 12236889999996542 455667899999999999765432111 1233
Q ss_pred HHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 194 KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
.......+.+.++++|.||.|+.+...-..+..+......+.+|+.++.....++.+..
T Consensus 95 ~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 153 (162)
T PF00071_consen 95 EEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIF 153 (162)
T ss_dssp HHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHH
T ss_pred ccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHH
Confidence 33444556568999999999988632211111111223445788888877766655433
No 188
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.00 E-value=1.8e-09 Score=102.37 Aligned_cols=69 Identities=22% Similarity=0.201 Sum_probs=46.4
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---HHHHHHHHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~---~~l~l~~~~~~~~~rti~VltK 212 (610)
..+.|+||||.... ..+...|++.+|++|+|++..+.+.... ..+...+...+ +.|+++|.||
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK 114 (174)
T cd01871 49 VNLGLWDTAGQEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTK 114 (174)
T ss_pred EEEEEEECCCchhh-------------hhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeC
Confidence 35789999996443 3456678999999999998765431111 11222333333 6899999999
Q ss_pred ccCCCC
Q 007263 213 IDLMDK 218 (610)
Q Consensus 213 ~D~~~~ 218 (610)
+|+.+.
T Consensus 115 ~Dl~~~ 120 (174)
T cd01871 115 LDLRDD 120 (174)
T ss_pred hhhccC
Confidence 998643
No 189
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.00 E-value=2.1e-09 Score=120.23 Aligned_cols=168 Identities=17% Similarity=0.255 Sum_probs=92.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
+..|+++|+.++|||||+++|+... +..++.... ..+.|.... ++
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~~~---------------------~~~~D~~~~--------Er 47 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISEREMR---------------------EQVLDSMDL--------ER 47 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCcccccc---------------------ccccCCChH--------HH
Confidence 4579999999999999999998753 333322100 000111000 11
Q ss_pred hcCCCCccccccEEEEEe--cCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH
Q 007263 114 ETGRTKQISSVPIHLSIY--SPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~--~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~ 191 (610)
..| ..+....+.+... +.....++||||||..+. ...+..|++.+|++|||+++.+. ...+
T Consensus 48 erG--iTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF-------------~~~v~~~l~~aD~aILVvDat~g-~~~q- 110 (595)
T TIGR01393 48 ERG--ITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF-------------SYEVSRSLAACEGALLLVDAAQG-IEAQ- 110 (595)
T ss_pred hcC--CCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH-------------HHHHHHHHHhCCEEEEEecCCCC-CCHh-
Confidence 113 2233344444332 222346899999998663 44567889999999999986542 2222
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCCc-HHHHHcCcccccCC---CeeEeeeCChhhhhccccHHH
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGTD-AADILEGKSYRLKF---PWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~-~~~~l~~~~~~l~~---g~~~v~~~s~~~~~~~~~~~~ 256 (610)
....+......+.+.++|+||+|+.....+ ..+.+. ..++. .++.+++.+..+++.+...+.
T Consensus 111 t~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~---~~lg~~~~~vi~vSAktG~GI~~Lle~I~ 176 (595)
T TIGR01393 111 TLANVYLALENDLEIIPVINKIDLPSADPERVKKEIE---EVIGLDASEAILASAKTGIGIEEILEAIV 176 (595)
T ss_pred HHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHH---HHhCCCcceEEEeeccCCCCHHHHHHHHH
Confidence 221112222246799999999998643211 111111 11222 256666666666655554443
No 190
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.00 E-value=1.1e-09 Score=103.38 Aligned_cols=68 Identities=19% Similarity=0.164 Sum_probs=43.8
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---HHHHHHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~---~~l~l~~~~~~~~~rti~VltK~ 213 (610)
.+.++||||.... ..+...+++.+|++|+|++..+.+.... ......+.. ..+.|.++|.||+
T Consensus 49 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~ 114 (174)
T cd04135 49 LLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQI 114 (174)
T ss_pred EEEEEeCCCcccc-------------cccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEch
Confidence 4789999997553 2223456789999999987654321111 112223333 4578999999999
Q ss_pred cCCCC
Q 007263 214 DLMDK 218 (610)
Q Consensus 214 D~~~~ 218 (610)
|+.+.
T Consensus 115 Dl~~~ 119 (174)
T cd04135 115 DLRDD 119 (174)
T ss_pred hhhcC
Confidence 98654
No 191
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.98 E-value=2.9e-09 Score=108.25 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=49.5
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
...+++|||||..+. ...+..++..+|++++++++.... ......+.+.+...+.|.++|+||+|
T Consensus 63 ~~~i~liDtPG~~~f-------------~~~~~~~l~~aD~~i~Vvd~~~g~--~~~~~~~~~~~~~~~~p~iivvNK~D 127 (268)
T cd04170 63 GHKINLIDTPGYADF-------------VGETRAALRAADAALVVVSAQSGV--EVGTEKLWEFADEAGIPRIIFINKMD 127 (268)
T ss_pred CEEEEEEECcCHHHH-------------HHHHHHHHHHCCEEEEEEeCCCCC--CHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 357899999997542 344677888999999999876532 22233444455556789999999999
Q ss_pred CCCC
Q 007263 215 LMDK 218 (610)
Q Consensus 215 ~~~~ 218 (610)
....
T Consensus 128 ~~~~ 131 (268)
T cd04170 128 RERA 131 (268)
T ss_pred cCCC
Confidence 8754
No 192
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.97 E-value=4.1e-09 Score=104.14 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..-+|+|||+.++|||||++.+++..| +... .|+...
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y-----~pTi~~------------------------------------- 48 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY-PETY-----VPTVFE------------------------------------- 48 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC-CCCc-----CCceee-------------------------------------
Confidence 345899999999999999999998765 3221 121100
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~-- 190 (610)
.+ ...+.+. .....+.|+||||-... +.+...|++.+|++|||++..+.+....
T Consensus 49 -------~~---~~~i~~~-~~~v~l~iwDTaG~e~~-------------~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~ 104 (232)
T cd04174 49 -------NY---TAGLETE-EQRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPETVDSAL 104 (232)
T ss_pred -------ee---EEEEEEC-CEEEEEEEEeCCCchhh-------------HHHHHHHcCCCcEEEEEEECCChHHHHHHH
Confidence 00 0011111 12246889999996442 5566789999999999998775432211
Q ss_pred -HHHHHHHHhCCCCCceEEEeecccCCC
Q 007263 191 -DAIKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 191 -~~l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
.....++...+ +.++|+|.||+|+.+
T Consensus 105 ~~w~~~i~~~~~-~~piilVgNK~DL~~ 131 (232)
T cd04174 105 KKWKAEIMDYCP-STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHHHHhCC-CCCEEEEEECccccc
Confidence 12233343344 579999999999854
No 193
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.96 E-value=5.4e-09 Score=101.62 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=47.0
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCC-CeEEEEeecCCCccccHHHHHH----HH--HhCCCCCceEE
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP-NCIILAISPANQDLATSDAIKI----SR--EVDPTGERTFG 208 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~-d~iil~v~~a~~d~~~~~~l~l----~~--~~~~~~~rti~ 208 (610)
..+.+|||||..+. +.+...|++.+ +++|++++++...-...++..+ .. .....+.|+++
T Consensus 48 ~~~~l~D~pG~~~~-------------~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvli 114 (203)
T cd04105 48 KKFRLVDVPGHPKL-------------RDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLI 114 (203)
T ss_pred ceEEEEECCCCHHH-------------HHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEE
Confidence 45889999997542 55667888888 9999999987641111121111 11 11235799999
Q ss_pred EeecccCCCC
Q 007263 209 VLTKIDLMDK 218 (610)
Q Consensus 209 VltK~D~~~~ 218 (610)
|.||.|+...
T Consensus 115 v~NK~Dl~~a 124 (203)
T cd04105 115 ACNKQDLFTA 124 (203)
T ss_pred Eecchhhccc
Confidence 9999998754
No 194
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.96 E-value=2.3e-09 Score=103.79 Aligned_cols=108 Identities=13% Similarity=0.158 Sum_probs=67.3
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.|+||||..+. ..+...|++.+|++|+|++..+.+... ......++... .+.++++|.||+
T Consensus 44 ~~l~iwDt~G~e~~-------------~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK~ 109 (200)
T smart00176 44 IRFNVWDTAGQEKF-------------GGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNKV 109 (200)
T ss_pred EEEEEEECCCchhh-------------hhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEECc
Confidence 46889999997553 566778999999999999876532111 11122233332 368999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 259 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (610)
|+....... +.+. .....+..|+.+++.+..+++..+..+....
T Consensus 110 Dl~~~~v~~-~~~~-~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 110 DVKDRKVKA-KSIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred ccccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 985432111 1111 1122345678888877777777666655443
No 195
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.96 E-value=7.5e-09 Score=106.88 Aligned_cols=110 Identities=23% Similarity=0.231 Sum_probs=61.6
Q ss_pred EEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhcC
Q 007263 37 IAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETG 116 (610)
Q Consensus 37 IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (610)
|++||.+|+|||||+|+|++..+-......||+-|+.-...-... .+..++ +....
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~----------~~~~r~--------------~~~~~ 56 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVE----------CPCKEL--------------GVSCN 56 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecC----------CCchhh--------------hhhhc
Confidence 589999999999999999998752223334676664322110000 000000 00000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecC
Q 007263 117 RTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (610)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a 183 (610)
...+. .+.+....++.++||||+...+..+ ..+.+...++++++|++++|++..
T Consensus 57 ~~~~~-------~~~~~~~v~i~l~D~aGlv~ga~~~------~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 57 PRYGK-------CIDGKRYVPVELIDVAGLVPGAHEG------KGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred ccccc-------cccCcCcceEEEEECCCCCCCccch------hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 00000 0111122458999999997643321 223344566799999999999865
No 196
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.95 E-value=4.6e-09 Score=102.93 Aligned_cols=66 Identities=21% Similarity=0.291 Sum_probs=48.0
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
..+.++||||..+. ...+..++..+|++|+++++.... ......+.+.+...+.+.++|+||+|+
T Consensus 71 ~~i~iiDtpG~~~f-------------~~~~~~~~~~aD~~llVvD~~~~~--~~~~~~~~~~~~~~~~p~iiviNK~D~ 135 (213)
T cd04167 71 YLFNIIDTPGHVNF-------------MDEVAAALRLSDGVVLVVDVVEGV--TSNTERLIRHAILEGLPIVLVINKIDR 135 (213)
T ss_pred EEEEEEECCCCcch-------------HHHHHHHHHhCCEEEEEEECCCCC--CHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 46899999998653 345778899999999999876432 222333444444456899999999998
Q ss_pred C
Q 007263 216 M 216 (610)
Q Consensus 216 ~ 216 (610)
.
T Consensus 136 ~ 136 (213)
T cd04167 136 L 136 (213)
T ss_pred C
Confidence 6
No 197
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.95 E-value=1.5e-09 Score=107.47 Aligned_cols=155 Identities=20% Similarity=0.327 Sum_probs=92.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcc--cccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPR--GSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~--~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (610)
..+-|.+||-||||||||||+|+... |. ....+|-.|.
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~-------------------------------------- 234 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPH-------------------------------------- 234 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccC--Ccccccceeeeccc--------------------------------------
Confidence 45678999999999999999999864 21 1122333330
Q ss_pred hhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC-cccc
Q 007263 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLAT 189 (610)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~-d~~~ 189 (610)
.|. +...+..++++-|+|||+..+..+- .+ ---..+.|+.++.+++||+.++. +...
T Consensus 235 ----iG~------------v~yddf~q~tVADiPGiI~GAh~nk--Gl----G~~FLrHiER~~~l~fVvD~s~~~~~~p 292 (366)
T KOG1489|consen 235 ----IGT------------VNYDDFSQITVADIPGIIEGAHMNK--GL----GYKFLRHIERCKGLLFVVDLSGKQLRNP 292 (366)
T ss_pred ----cce------------eeccccceeEeccCccccccccccC--cc----cHHHHHHHHhhceEEEEEECCCcccCCH
Confidence 020 2222344699999999998765431 11 11134557789999999987654 1111
Q ss_pred HHHHH-HHHHhCC-----CCCceEEEeecccCCCCCCcHHHHHcCcccccCCC-eeEeeeCChhhhhccc
Q 007263 190 SDAIK-ISREVDP-----TGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKNV 252 (610)
Q Consensus 190 ~~~l~-l~~~~~~-----~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~ 252 (610)
-+.++ +..++.- ...+.++|+||+|+.+...+. ++....+++.+ .++|++.++++...++
T Consensus 293 ~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~---l~~L~~~lq~~~V~pvsA~~~egl~~ll 359 (366)
T KOG1489|consen 293 WQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL---LSSLAKRLQNPHVVPVSAKSGEGLEELL 359 (366)
T ss_pred HHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH---HHHHHHHcCCCcEEEeeeccccchHHHH
Confidence 12222 3333321 246799999999986433222 23334455555 6777777776555443
No 198
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.94 E-value=3.6e-09 Score=100.62 Aligned_cols=114 Identities=20% Similarity=0.286 Sum_probs=72.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+++|+.++|||||++++.+..| |... .|+...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~---------------------------------------- 36 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETY-----VPTVFE---------------------------------------- 36 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCc-----CCceEE----------------------------------------
Confidence 699999999999999999998765 4321 121100
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---HH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DA 192 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~---~~ 192 (610)
.+. ..+.+.+ ....+.|+||||-... ..+...|++.+|++|+|++..+.+.-.. ..
T Consensus 37 ----~~~---~~~~~~~-~~~~l~iwDt~G~~~~-------------~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w 95 (178)
T cd04131 37 ----NYT---ASFEIDE-QRIELSLWDTSGSPYY-------------DNVRPLCYPDSDAVLICFDISRPETLDSVLKKW 95 (178)
T ss_pred ----EEE---EEEEECC-EEEEEEEEECCCchhh-------------hhcchhhcCCCCEEEEEEECCChhhHHHHHHHH
Confidence 000 0111211 2246889999996442 3445678999999999998765332111 12
Q ss_pred HHHHHHhCCCCCceEEEeecccCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
...++...+ ..++++|.||+|+.+
T Consensus 96 ~~~i~~~~~-~~~iilVgnK~DL~~ 119 (178)
T cd04131 96 RGEIQEFCP-NTKVLLVGCKTDLRT 119 (178)
T ss_pred HHHHHHHCC-CCCEEEEEEChhhhc
Confidence 223344444 589999999999864
No 199
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.94 E-value=6.3e-09 Score=116.61 Aligned_cols=170 Identities=17% Similarity=0.264 Sum_probs=95.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
....|+++|+.++|||||+++|+... |..++... +..+.|.... +
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~~---------------------~~~~lD~~~~--------E 50 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELT------GTLSEREM---------------------KAQVLDSMDL--------E 50 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhc------CCCccccc---------------------ccccccCchH--------H
Confidence 45689999999999999999998642 22222110 0011111110 1
Q ss_pred hhcCCCCccccccEEEEEec--CCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH
Q 007263 113 RETGRTKQISSVPIHLSIYS--PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~--~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~ 190 (610)
+..| ..+....+.+.... .....++||||||..+. ...+..+++.+|.+|||+++.+. ...+
T Consensus 51 rerG--iTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF-------------~~~v~~sl~~aD~aILVVDas~g-v~~q 114 (600)
T PRK05433 51 RERG--ITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF-------------SYEVSRSLAACEGALLVVDASQG-VEAQ 114 (600)
T ss_pred hhcC--CcccccEEEEEEEccCCCcEEEEEEECCCcHHH-------------HHHHHHHHHHCCEEEEEEECCCC-CCHH
Confidence 1113 22333344443322 12346899999998763 34467889999999999987642 2222
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCCCc-HHHHHcCcccccCCC---eeEeeeCChhhhhccccHHHH
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTD-AADILEGKSYRLKFP---WIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~-~~~~l~~~~~~l~~g---~~~v~~~s~~~~~~~~~~~~~ 257 (610)
....+..+...+.++|+|+||+|+.....+ ..+.+. ..++.+ ++.+++.+..+++.+...+..
T Consensus 115 -t~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~---~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~ 181 (600)
T PRK05433 115 -TLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIE---DVIGIDASDAVLVSAKTGIGIEEVLEAIVE 181 (600)
T ss_pred -HHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHH---HHhCCCcceEEEEecCCCCCHHHHHHHHHH
Confidence 222222233357899999999998643211 111111 112222 567777776766665555443
No 200
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.94 E-value=3.4e-09 Score=101.19 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=73.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|+.++|||||++.+++..| +.... +|-..
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f-~~~~~-pT~~~------------------------------------------ 40 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFE------------------------------------------ 40 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-CCccC-Cceee------------------------------------------
Confidence 34799999999999999999998765 32211 11100
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc---H
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT---S 190 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~---~ 190 (610)
.+ ...+.+ ......+.|+||+|-... ..+...|++++|++|||++..+.+... .
T Consensus 41 ------~~---~~~~~~-~~~~~~l~iwDtaG~e~~-------------~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~ 97 (182)
T cd04172 41 ------NY---TASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVLK 97 (182)
T ss_pred ------ee---EEEEEE-CCEEEEEEEEECCCchhh-------------HhhhhhhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 00 001111 112246889999996432 455677899999999999876542211 1
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
.....++...| ..+.|+|.||.|+.+
T Consensus 98 ~w~~~i~~~~~-~~piilVgNK~DL~~ 123 (182)
T cd04172 98 KWKGEIQEFCP-NTKMLLVGCKSDLRT 123 (182)
T ss_pred HHHHHHHHHCC-CCCEEEEeEChhhhc
Confidence 12223344444 589999999999854
No 201
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.93 E-value=2.5e-09 Score=115.93 Aligned_cols=144 Identities=20% Similarity=0.355 Sum_probs=74.4
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
--.|+++|..++|||||+++|++.. +..++.-+ .+..... ...++.-..+..+.+...+ ++
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~------g~i~~~~~----~~~~~~~-------~~~g~~~~~~~~~~D~~~~--Er 66 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYET------GAIDEHII----EELREEA-------KEKGKESFKFAWVMDRLKE--ER 66 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHc------CCcCHHHH----HHHHHHH-------HhcCCcccchhhhhccCHh--Hh
Confidence 3469999999999999999999754 22221100 0000000 0000000111112221111 22
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC-ccc--cH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLA--TS 190 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~-d~~--~~ 190 (610)
..|.+.. .....+. .+...++||||||..+.. .. ....+..+|++|||+++... +.. +.
T Consensus 67 ~rG~T~d----~~~~~~~-~~~~~i~liDtpG~~~~~------------~~-~~~~~~~aD~~ilVvDa~~~~~~~~~~~ 128 (425)
T PRK12317 67 ERGVTID----LAHKKFE-TDKYYFTIVDCPGHRDFV------------KN-MITGASQADAAVLVVAADDAGGVMPQTR 128 (425)
T ss_pred hcCccce----eeeEEEe-cCCeEEEEEECCCcccch------------hh-HhhchhcCCEEEEEEEcccCCCCCcchH
Confidence 2343332 2222222 234579999999964321 22 23446789999999986541 221 22
Q ss_pred HHHHHHHHhCCCC-CceEEEeecccCCC
Q 007263 191 DAIKISREVDPTG-ERTFGVLTKIDLMD 217 (610)
Q Consensus 191 ~~l~l~~~~~~~~-~rti~VltK~D~~~ 217 (610)
+.+.+++. .+ .+.++|+||+|+.+
T Consensus 129 ~~~~~~~~---~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 129 EHVFLART---LGINQLIVAINKMDAVN 153 (425)
T ss_pred HHHHHHHH---cCCCeEEEEEEcccccc
Confidence 33334433 34 46899999999975
No 202
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.93 E-value=3.7e-09 Score=105.25 Aligned_cols=89 Identities=25% Similarity=0.347 Sum_probs=59.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
-|+++||.||+|||||||+|+|..-=+-+...+|..| +
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~------------------------------------------V 101 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEP------------------------------------------V 101 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceeccc------------------------------------------c
Confidence 4899999999999999999999752111111222211 1
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCC
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN 184 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~ 184 (610)
.| +......++.|+|+||+...+..+-.. -..+.+.++.||+||+|++..+
T Consensus 102 PG-------------~l~Y~ga~IQild~Pgii~gas~g~gr------G~~vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 102 PG-------------MLEYKGAQIQLLDLPGIIEGASSGRGR------GRQVLSVARNADLIIIVLDVFE 152 (365)
T ss_pred cc-------------eEeecCceEEEEcCcccccCcccCCCC------cceeeeeeccCCEEEEEEecCC
Confidence 13 233355689999999998876554210 1235667889999999998654
No 203
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.93 E-value=5e-09 Score=100.84 Aligned_cols=116 Identities=21% Similarity=0.204 Sum_probs=72.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
-+|+++|+.++|||||+..+++..| |... .|+.-.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~--------------------------------------- 38 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY-----IPTVFD--------------------------------------- 38 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCC-----CCceEe---------------------------------------
Confidence 4799999999999999999998765 3211 121100
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-cHH--
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TSD-- 191 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~~~-- 191 (610)
.+ ...+.+ +.....+.|+||||-.+. +.+...|++++|++|+|++..+.+.. +-.
T Consensus 39 -----~~---~~~~~~-~~~~~~l~i~Dt~G~e~~-------------~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~ 96 (191)
T cd01875 39 -----NY---SAQTAV-DGRTVSLNLWDTAGQEEY-------------DRLRTLSYPQTNVFIICFSIASPSSYENVRHK 96 (191)
T ss_pred -----ee---EEEEEE-CCEEEEEEEEECCCchhh-------------hhhhhhhccCCCEEEEEEECCCHHHHHHHHHH
Confidence 00 001111 112246889999997553 55677899999999999987654311 111
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
.....+... .+.|+++|.||.|+.+.
T Consensus 97 w~~~i~~~~-~~~piilvgNK~DL~~~ 122 (191)
T cd01875 97 WHPEVCHHC-PNVPILLVGTKKDLRND 122 (191)
T ss_pred HHHHHHhhC-CCCCEEEEEeChhhhcC
Confidence 111122222 36899999999998643
No 204
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.92 E-value=1.2e-08 Score=98.89 Aligned_cols=95 Identities=16% Similarity=0.074 Sum_probs=57.4
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHh-----------------
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV----------------- 199 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~----------------- 199 (610)
.+.|+||+|-.+. ..+...|++++|++|+|++..+.+... ....+..++
T Consensus 55 ~l~IwDtaG~e~~-------------~~l~~~~yr~ad~iIlVyDvtn~~Sf~-~l~~W~~ei~~~~~~~~~~~~~~~~~ 120 (202)
T cd04102 55 FVELWDVGGSESV-------------KSTRAVFYNQVNGIILVHDLTNRKSSQ-NLQRWSLEALNKDTFPTGLLVTNGDY 120 (202)
T ss_pred EEEEEecCCchhH-------------HHHHHHHhCcCCEEEEEEECcChHHHH-HHHHHHHHHHHhhccccccccccccc
Confidence 5789999997543 567788999999999999877643211 111222222
Q ss_pred -----CCCCCceEEEeecccCCCCCC-cHH---HHHcCcccccCCCeeEeeeCCh
Q 007263 200 -----DPTGERTFGVLTKIDLMDKGT-DAA---DILEGKSYRLKFPWIGVVNRSQ 245 (610)
Q Consensus 200 -----~~~~~rti~VltK~D~~~~~~-~~~---~~l~~~~~~l~~g~~~v~~~s~ 245 (610)
.+.+.|+|+|.||.|+.+... ... .-.......++...+.+.|...
T Consensus 121 ~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~ 175 (202)
T cd04102 121 DSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNG 175 (202)
T ss_pred cccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCc
Confidence 123579999999999975421 111 1111123445566666665543
No 205
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.91 E-value=4.8e-09 Score=117.74 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=63.2
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCc-eEEEeec
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTK 212 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~r-ti~VltK 212 (610)
+...++||||||..+ .+.+ ....+..+|.++|||++.. ++. ......+..+...+.+ .|+|+||
T Consensus 49 ~g~~i~~IDtPGhe~------------fi~~-m~~g~~~~D~~lLVVda~e-g~~-~qT~ehl~il~~lgi~~iIVVlNK 113 (614)
T PRK10512 49 DGRVLGFIDVPGHEK------------FLSN-MLAGVGGIDHALLVVACDD-GVM-AQTREHLAILQLTGNPMLTVALTK 113 (614)
T ss_pred CCcEEEEEECCCHHH------------HHHH-HHHHhhcCCEEEEEEECCC-CCc-HHHHHHHHHHHHcCCCeEEEEEEC
Confidence 334589999999632 2233 3456788999999987543 222 2222222333333455 5799999
Q ss_pred ccCCCCCC--cHHHHHcCcc--ccc-CCCeeEeeeCChhhhhccccHHHHH
Q 007263 213 IDLMDKGT--DAADILEGKS--YRL-KFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 213 ~D~~~~~~--~~~~~l~~~~--~~l-~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
+|+.++.. ...+.+.... ..+ ...+++|+..+..+++.+...+...
T Consensus 114 iDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 114 ADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 99975321 1111111111 111 2457888888888887777666544
No 206
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.91 E-value=1.2e-08 Score=113.84 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=45.7
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
+.++|+||||..+. ..+...++..+|++|||+++.. +. .......+..+...+.|+++|+||+|+
T Consensus 71 ~~i~~iDTPG~e~f-------------~~~~~~~~~~aD~~IlVvDa~~-g~-~~qt~e~i~~~~~~~vpiIvviNK~D~ 135 (586)
T PRK04004 71 PGLLFIDTPGHEAF-------------TNLRKRGGALADIAILVVDINE-GF-QPQTIEAINILKRRKTPFVVAANKIDR 135 (586)
T ss_pred CCEEEEECCChHHH-------------HHHHHHhHhhCCEEEEEEECCC-CC-CHhHHHHHHHHHHcCCCEEEEEECcCC
Confidence 45899999997543 3445567889999999998654 22 122223333344457899999999998
Q ss_pred C
Q 007263 216 M 216 (610)
Q Consensus 216 ~ 216 (610)
.
T Consensus 136 ~ 136 (586)
T PRK04004 136 I 136 (586)
T ss_pred c
Confidence 6
No 207
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=8.3e-09 Score=95.72 Aligned_cols=152 Identities=17% Similarity=0.246 Sum_probs=96.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
.-|-.|+|+|+.|+|||-|+-.+.+-.| |-..
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~----------------------------------------------- 38 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTF-TESY----------------------------------------------- 38 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCc-chhh-----------------------------------------------
Confidence 3577899999999999999999998775 2111
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~ 191 (610)
+.+.++......+++.+... .|.++||.|--+. +.++.+|.+++|.||+|.+-......+.
T Consensus 39 ----~sTIGVDf~~rt~e~~gk~i-KlQIWDTAGQERF-------------rtit~syYR~ahGii~vyDiT~~~SF~~- 99 (205)
T KOG0084|consen 39 ----ISTIGVDFKIRTVELDGKTI-KLQIWDTAGQERF-------------RTITSSYYRGAHGIIFVYDITKQESFNN- 99 (205)
T ss_pred ----cceeeeEEEEEEeeecceEE-EEEeeeccccHHH-------------hhhhHhhccCCCeEEEEEEcccHHHhhh-
Confidence 22233333333444444333 6899999997553 7889999999999999998665322111
Q ss_pred HHHHHHHhC---CCCCceEEEeecccCCCCCCcHHHHHcCcccccCCC-eeEeeeCChhhhhc
Q 007263 192 AIKISREVD---PTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINK 250 (610)
Q Consensus 192 ~l~l~~~~~---~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~ 250 (610)
...+..+++ ..+.+.+.|-||+|+.+...-..+..+.....++.+ |+..+..++..+++
T Consensus 100 v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 100 VKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred HHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 222344444 446799999999999865421112222223444555 66666655554443
No 208
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=6.5e-09 Score=97.83 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=100.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 007263 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (610)
Q Consensus 31 ~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (610)
+..+-.|++||+.++|||+++-.+..-.| . +.+...
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f-----~--~~~~sT------------------------------------- 44 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSF-----N--TSFIST------------------------------------- 44 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccC-----c--CCccce-------------------------------------
Confidence 35678999999999999999999988765 1 111100
Q ss_pred hhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-ccc
Q 007263 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT 189 (610)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~~~ 189 (610)
.++....-.+++.+ ...-|.+|||.|-.+. +.++.+|++.++-|+|+++-++.. +.+
T Consensus 45 --------iGIDFk~kti~l~g-~~i~lQiWDtaGQerf-------------~ti~~sYyrgA~gi~LvyDitne~Sfen 102 (207)
T KOG0078|consen 45 --------IGIDFKIKTIELDG-KKIKLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDITNEKSFEN 102 (207)
T ss_pred --------EEEEEEEEEEEeCC-eEEEEEEEEcccchhH-------------HHHHHHHHhhcCeeEEEEEccchHHHHH
Confidence 11111111111111 2235889999998764 888999999999999999877642 222
Q ss_pred -HHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 190 -SDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 190 -~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
..+++..++..+.+.+.++|-||+|+.++..-..+--+......+..|+.+++.+..++.+-+
T Consensus 103 i~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 103 IRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF 166 (207)
T ss_pred HHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence 124445556667789999999999998754322222222234456677877777665554433
No 209
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=2.6e-09 Score=98.62 Aligned_cols=161 Identities=14% Similarity=0.187 Sum_probs=99.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
-.||++|+.|+|||||+..++--.| +.....+.-
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F-~e~~e~TIG--------------------------------------------- 39 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQF-HENIEPTIG--------------------------------------------- 39 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCcc-ccccccccc---------------------------------------------
Confidence 4799999999999999999998776 221111111
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~ 194 (610)
..|-.. .+.+ +.....+.|+||.|..+. ..++.-|.+++++.|+|.+..+.+. -..+-.
T Consensus 40 ----aaF~tk--tv~~-~~~~ikfeIWDTAGQERy-------------~slapMYyRgA~AAivvYDit~~~S-F~~aK~ 98 (200)
T KOG0092|consen 40 ----AAFLTK--TVTV-DDNTIKFEIWDTAGQERY-------------HSLAPMYYRGANAAIVVYDITDEES-FEKAKN 98 (200)
T ss_pred ----cEEEEE--EEEe-CCcEEEEEEEEcCCcccc-------------cccccceecCCcEEEEEEecccHHH-HHHHHH
Confidence 111111 1111 112345779999999875 5678899999999999998765432 123334
Q ss_pred HHHHhCCC---CCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHHHHH
Q 007263 195 ISREVDPT---GERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRER 262 (610)
Q Consensus 195 l~~~~~~~---~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~ 262 (610)
+.+++... +.-+-+|-||+|+.....-..+-.......-++-|+..++..+.+++.....+....++.
T Consensus 99 WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 99 WVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCc
Confidence 55555433 344446899999987433111111222334567788888888887777666655554443
No 210
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.86 E-value=5.4e-09 Score=102.93 Aligned_cols=71 Identities=11% Similarity=0.198 Sum_probs=44.2
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-----ccHHHHHHHHHhCCCC-CceE
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-----ATSDAIKISREVDPTG-ERTF 207 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-----~~~~~l~l~~~~~~~~-~rti 207 (610)
....++|+||||..+. ...+..++..+|++|+|+++..... ........+......+ .|++
T Consensus 75 ~~~~i~liDtpG~~~~-------------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 141 (219)
T cd01883 75 EKYRFTILDAPGHRDF-------------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLI 141 (219)
T ss_pred CCeEEEEEECCChHHH-------------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEE
Confidence 4467999999996432 1224456788999999998765311 1111222222222233 6889
Q ss_pred EEeecccCCC
Q 007263 208 GVLTKIDLMD 217 (610)
Q Consensus 208 ~VltK~D~~~ 217 (610)
+|+||+|+..
T Consensus 142 ivvNK~Dl~~ 151 (219)
T cd01883 142 VAVNKMDDVT 151 (219)
T ss_pred EEEEcccccc
Confidence 9999999973
No 211
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.86 E-value=1.3e-08 Score=100.07 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=72.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+|||+.++|||||++++++..| |.... +|-..
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~-pTi~~-------------------------------------------- 36 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSYV-PTVFE-------------------------------------------- 36 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccC-Ccccc--------------------------------------------
Confidence 689999999999999999998765 43211 11110
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH---H
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD---A 192 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~---~ 192 (610)
.+ ...+.+ +.....|.|+||||-... ..+...|+..+|++|+|++..+.+....- .
T Consensus 37 ----~~---~~~~~~-~~~~v~L~iwDt~G~e~~-------------~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w 95 (222)
T cd04173 37 ----NY---TASFEI-DKRRIELNMWDTSGSSYY-------------DNVRPLAYPDSDAVLICFDISRPETLDSVLKKW 95 (222)
T ss_pred ----ce---EEEEEE-CCEEEEEEEEeCCCcHHH-------------HHHhHHhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 011112 112346889999996442 44556789999999999987654321111 1
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
....+... .+.|+|+|.||+|+.+.
T Consensus 96 ~~~~~~~~-~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 96 QGETQEFC-PNAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHHHHhhC-CCCCEEEEEECcccccc
Confidence 11122222 36899999999998653
No 212
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.86 E-value=8.1e-09 Score=118.37 Aligned_cols=134 Identities=15% Similarity=0.230 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
++..|+|+|..++|||||+|+|++.. +...+.- ...+ +....|+.. .+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~------g~~~~~~------~~~~------------g~~~~D~~~--------~e 56 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYT------GRIHKIG------EVHD------------GAATMDWME--------QE 56 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhC------CCccccc------cccC------------CccccCCCH--------HH
Confidence 57799999999999999999998642 1111100 0000 011111111 11
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+..|.+ +......++ . +...++||||||..+. ...+..+++.+|++|+|+++.. .. ....
T Consensus 57 ~~rgit--i~~~~~~~~--~-~~~~i~liDTPG~~~~-------------~~~~~~~l~~~D~~ilVvda~~-g~-~~~~ 116 (689)
T TIGR00484 57 KERGIT--ITSAATTVF--W-KGHRINIIDTPGHVDF-------------TVEVERSLRVLDGAVAVLDAVG-GV-QPQS 116 (689)
T ss_pred HhcCCC--EecceEEEE--E-CCeEEEEEECCCCcch-------------hHHHHHHHHHhCEEEEEEeCCC-CC-ChhH
Confidence 222322 222222222 2 3457999999999653 2236788899999999998654 22 2333
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+++.+...+.|.++|+||+|+...
T Consensus 117 ~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 117 ETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 44555666668999999999998753
No 213
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.85 E-value=6.9e-09 Score=108.28 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhccCC-CCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCc
Q 007263 6 SLVNKIQRACTALGDHG-EASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSR 84 (610)
Q Consensus 6 ~~~~~lq~~~~~~~~~~-~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~ 84 (610)
.++.+.+..+..|.+.. +-.++|++...-++++|||-+|+|||||+|-++..++ . +-.+|.+
T Consensus 139 tv~k~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-----e-vqpYaFT----------- 201 (620)
T KOG1490|consen 139 TIIKRQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-----E-VQPYAFT----------- 201 (620)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-----c-cCCcccc-----------
Confidence 34444444444444321 2346777777889999999999999999998887654 1 1122211
Q ss_pred cceeeccCCCcccCChHHHHHHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHH
Q 007263 85 EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIEN 164 (610)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~ 164 (610)
...+.+.-.......+.++|||||-+.+.. ....++-
T Consensus 202 --------------------------------------TksL~vGH~dykYlrwQViDTPGILD~plE-----drN~IEm 238 (620)
T KOG1490|consen 202 --------------------------------------TKLLLVGHLDYKYLRWQVIDTPGILDRPEE-----DRNIIEM 238 (620)
T ss_pred --------------------------------------cchhhhhhhhhheeeeeecCCccccCcchh-----hhhHHHH
Confidence 111111112223346889999999876543 4445555
Q ss_pred HHHHHhcCCCeEEEEeec-CCC-ccccHHHHHHHHHhCCC--CCceEEEeecccCCCCC
Q 007263 165 MVRSYIEKPNCIILAISP-ANQ-DLATSDAIKISREVDPT--GERTFGVLTKIDLMDKG 219 (610)
Q Consensus 165 ~~~~yi~~~d~iil~v~~-a~~-d~~~~~~l~l~~~~~~~--~~rti~VltK~D~~~~~ 219 (610)
.+-..+.+-.+.+|.+.. +.. +.+-.+-+++...+.|. ++++|+|+||+|.+...
T Consensus 239 qsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 239 QIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE 297 (620)
T ss_pred HHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc
Confidence 555556665555555432 221 34444555677777763 78999999999999664
No 214
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.82 E-value=1.5e-08 Score=97.72 Aligned_cols=66 Identities=23% Similarity=0.110 Sum_probs=43.4
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-ccH--HHHHHHHHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATS--DAIKISREVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~~--~~l~l~~~~~~~~~rti~VltK 212 (610)
..+.|+||||.... +...|++.+|++|+|++..+.+. .+. .....++...+ +.++++|.||
T Consensus 66 v~l~iwDTaG~~~~---------------~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK 129 (195)
T cd01873 66 VSLRLWDTFGDHDK---------------DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCK 129 (195)
T ss_pred EEEEEEeCCCChhh---------------hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 46889999997431 22358899999999998765431 111 12222333333 5799999999
Q ss_pred ccCCC
Q 007263 213 IDLMD 217 (610)
Q Consensus 213 ~D~~~ 217 (610)
+|+.+
T Consensus 130 ~DL~~ 134 (195)
T cd01873 130 LDLRY 134 (195)
T ss_pred hhccc
Confidence 99864
No 215
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.81 E-value=9.7e-09 Score=97.42 Aligned_cols=114 Identities=20% Similarity=0.274 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.--+|+++|.++|||||+++.|.+..+. +-.|
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~-------~~~p----------------------------------------- 44 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEIS-------ETIP----------------------------------------- 44 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEE-------EEEE-----------------------------------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhcccc-------ccCc-----------------------------------------
Confidence 4568999999999999999999875431 1111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+.++....+.. ....++++|++|-... +.+...|++.+|.+|+|+++++.+. -.++
T Consensus 45 -----T~g~~~~~i~~-----~~~~~~~~d~gG~~~~-------------~~~w~~y~~~~~~iIfVvDssd~~~-l~e~ 100 (175)
T PF00025_consen 45 -----TIGFNIEEIKY-----KGYSLTIWDLGGQESF-------------RPLWKSYFQNADGIIFVVDSSDPER-LQEA 100 (175)
T ss_dssp -----ESSEEEEEEEE-----TTEEEEEEEESSSGGG-------------GGGGGGGHTTESEEEEEEETTGGGG-HHHH
T ss_pred -----ccccccceeee-----CcEEEEEEeccccccc-------------cccceeeccccceeEEEEeccccee-eccc
Confidence 01111111111 2346899999996442 4567889999999999999876432 2233
Q ss_pred HHHHH-HhC---CCCCceEEEeecccCCCC
Q 007263 193 IKISR-EVD---PTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~-~~~---~~~~rti~VltK~D~~~~ 218 (610)
...+. .+. -.+.|+++++||.|..+.
T Consensus 101 ~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 101 KEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp HHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred ccchhhhcchhhcccceEEEEeccccccCc
Confidence 32222 222 246999999999998654
No 216
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.79 E-value=1.8e-08 Score=96.65 Aligned_cols=67 Identities=21% Similarity=0.174 Sum_probs=42.1
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---HHHHHHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~---~~l~l~~~~~~~~~rti~VltK~ 213 (610)
++.++||||...... +...++..+|.++++.+..+.+.... ..+..++...+ ..|.++|.||+
T Consensus 50 ~l~i~Dt~g~~~~~~-------------~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~ 115 (187)
T cd04129 50 QLALWDTAGQEEYER-------------LRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKK 115 (187)
T ss_pred EEEEEECCCChhccc-------------cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeCh
Confidence 578999999754321 12235688999998887654332111 12223333333 48999999999
Q ss_pred cCCC
Q 007263 214 DLMD 217 (610)
Q Consensus 214 D~~~ 217 (610)
|+.+
T Consensus 116 Dl~~ 119 (187)
T cd04129 116 DLRQ 119 (187)
T ss_pred hhhh
Confidence 9854
No 217
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.79 E-value=2.2e-08 Score=107.73 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=45.3
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc--cHHHHHHHHHhCCCCCceEEEee
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISREVDPTGERTFGVLT 211 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~--~~~~l~l~~~~~~~~~rti~Vlt 211 (610)
....++||||||..+ .+.++. ..+..+|++|||+++.. +.. +.+.+.++..+. ..+.|+|+|
T Consensus 78 ~~~~~~liDtPGh~~------------f~~~~~-~~~~~aD~allVVda~~-G~~~qt~~~~~~~~~~~--~~~iivviN 141 (406)
T TIGR02034 78 DKRKFIVADTPGHEQ------------YTRNMA-TGASTADLAVLLVDARK-GVLEQTRRHSYIASLLG--IRHVVLAVN 141 (406)
T ss_pred CCeEEEEEeCCCHHH------------HHHHHH-HHHhhCCEEEEEEECCC-CCccccHHHHHHHHHcC--CCcEEEEEE
Confidence 345799999999533 223333 45789999999998643 322 234445555443 246889999
Q ss_pred cccCCCC
Q 007263 212 KIDLMDK 218 (610)
Q Consensus 212 K~D~~~~ 218 (610)
|+|+.+.
T Consensus 142 K~D~~~~ 148 (406)
T TIGR02034 142 KMDLVDY 148 (406)
T ss_pred ecccccc
Confidence 9999753
No 218
>CHL00071 tufA elongation factor Tu
Probab=98.78 E-value=1.7e-08 Score=108.73 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=47.2
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCc-eEEEeec
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTK 212 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~r-ti~VltK 212 (610)
+..+++||||||..+ .+..+ ...+..+|++++++++.. .. .......+..+...+.+ .|+|+||
T Consensus 73 ~~~~~~~iDtPGh~~------------~~~~~-~~~~~~~D~~ilVvda~~-g~-~~qt~~~~~~~~~~g~~~iIvvvNK 137 (409)
T CHL00071 73 ENRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAILVVSAAD-GP-MPQTKEHILLAKQVGVPNIVVFLNK 137 (409)
T ss_pred CCeEEEEEECCChHH------------HHHHH-HHHHHhCCEEEEEEECCC-CC-cHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 445789999999532 23343 455678999999998653 33 23344455555556777 6789999
Q ss_pred ccCCCC
Q 007263 213 IDLMDK 218 (610)
Q Consensus 213 ~D~~~~ 218 (610)
+|+.+.
T Consensus 138 ~D~~~~ 143 (409)
T CHL00071 138 EDQVDD 143 (409)
T ss_pred cCCCCH
Confidence 999854
No 219
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.78 E-value=5e-08 Score=107.61 Aligned_cols=138 Identities=14% Similarity=0.259 Sum_probs=81.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+.-.|+++|..++|||||+|+|+... |..++... +. .... ......|+....
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~------g~i~~~g~-v~--~~~~-----------~~~~~~D~~~~E-------- 60 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFG------GAIQEAGT-VK--GRKS-----------GRHATSDWMEME-------- 60 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC------CCccccce-ee--cccc-----------CccccCCCcHHH--------
Confidence 56789999999999999999997432 22222220 00 0000 000111222111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+..| ..+......+.. +...+++|||||..+. ...+..++..+|++|+|+++.+. .. ...
T Consensus 61 ~~rg--iSi~~~~~~~~~---~~~~inliDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~~g-v~-~~t 120 (526)
T PRK00741 61 KQRG--ISVTSSVMQFPY---RDCLINLLDTPGHEDF-------------SEDTYRTLTAVDSALMVIDAAKG-VE-PQT 120 (526)
T ss_pred HhhC--CceeeeeEEEEE---CCEEEEEEECCCchhh-------------HHHHHHHHHHCCEEEEEEecCCC-CC-HHH
Confidence 1112 223333333322 3356999999997553 33467788999999999987652 32 233
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+.+.....+.|+++++||+|+...
T Consensus 121 ~~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 121 RKLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred HHHHHHHHhcCCCEEEEEECCccccc
Confidence 44555555678999999999998643
No 220
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.76 E-value=2.3e-08 Score=101.60 Aligned_cols=138 Identities=24% Similarity=0.375 Sum_probs=75.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
.|+|||..|+|||||+|+|++..+.+......+... ..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~------------------------------------------~~ 43 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSA------------------------------------------SI 43 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S-----------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccccccccccc------------------------------------------cc
Confidence 589999999999999999999887555411110000 00
Q ss_pred CCCCccccccEEEEEecCC-CCCcEEEeCCCCCccccC-CCCCchHHHHHHHHHHHhc-------------CCCeEEEEe
Q 007263 116 GRTKQISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVE-GQPDSIVQDIENMVRSYIE-------------KPNCIILAI 180 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~-~~~ltlvDtPGi~~~~~~-~q~~~~~~~i~~~~~~yi~-------------~~d~iil~v 180 (610)
..+..+..... .+...+ ..+|++|||||+.+.... .....+...+++.-..|+. +.|++++++
T Consensus 44 ~~~~~i~~~~~--~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI 121 (281)
T PF00735_consen 44 SRTLEIEERTV--ELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFI 121 (281)
T ss_dssp -SCEEEEEEEE--EEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE
T ss_pred ccccceeeEEE--EeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEE
Confidence 00111111111 111111 236999999999764321 1112233444444444543 346888888
Q ss_pred ecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 181 SPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 181 ~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
.|....+. ...+..++.+... .++|-||.|+|.+.+.
T Consensus 122 ~pt~~~L~-~~Di~~mk~Ls~~-vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 122 PPTGHGLK-PLDIEFMKRLSKR-VNVIPVIAKADTLTPE 158 (281)
T ss_dssp -TTSSSS--HHHHHHHHHHTTT-SEEEEEESTGGGS-HH
T ss_pred cCCCccch-HHHHHHHHHhccc-ccEEeEEecccccCHH
Confidence 87765554 4455678888764 8899999999998654
No 221
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.75 E-value=1.3e-07 Score=97.89 Aligned_cols=136 Identities=13% Similarity=0.127 Sum_probs=69.8
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHH-hCCCCCceEEEeecc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISRE-VDPTGERTFGVLTKI 213 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~-~~~~~~rti~VltK~ 213 (610)
..++.||||+|+..... . .+..+|++++++.+... +.++..+. .-. .--++|+||+
T Consensus 148 g~d~viieT~Gv~qs~~------~----------i~~~aD~vlvv~~p~~g-----d~iq~~k~gi~E--~aDIiVVNKa 204 (332)
T PRK09435 148 GYDVILVETVGVGQSET------A----------VAGMVDFFLLLQLPGAG-----DELQGIKKGIME--LADLIVINKA 204 (332)
T ss_pred CCCEEEEECCCCccchh------H----------HHHhCCEEEEEecCCch-----HHHHHHHhhhhh--hhheEEeehh
Confidence 46899999999974211 0 25569999888764432 22222111 101 1128999999
Q ss_pred cCCCCCC--cHHHHHcCc-c--cc----cCCCeeEeeeCChhhhhccccHHHHHHHHHhHhccCCCCchhhhccChHHHH
Q 007263 214 DLMDKGT--DAADILEGK-S--YR----LKFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLA 284 (610)
Q Consensus 214 D~~~~~~--~~~~~l~~~-~--~~----l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~ 284 (610)
|+..... .....+... . .+ -..+.+.+++.+..+++.+.+.+..... |++....+++...+--...+.
T Consensus 205 Dl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~---~l~~sg~l~~~r~~~~~~~v~ 281 (332)
T PRK09435 205 DGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA---ALTASGEFAARRREQQVDWMW 281 (332)
T ss_pred cccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhccCChHHHHHHHHHHHHHH
Confidence 9886432 111111110 0 00 0124556777777777777766655433 555555454432111222334
Q ss_pred HHHHHHHHHHHH
Q 007263 285 KMLSKHLETVIK 296 (610)
Q Consensus 285 ~~L~~~L~~~i~ 296 (610)
+.+++.+..+++
T Consensus 282 elire~l~~~~~ 293 (332)
T PRK09435 282 EMVEEGLLDRLF 293 (332)
T ss_pred HHHHHHHHHHHh
Confidence 445555555443
No 222
>PRK12739 elongation factor G; Reviewed
Probab=98.75 E-value=3.7e-08 Score=112.97 Aligned_cols=134 Identities=16% Similarity=0.229 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
++..|+|+|..++|||||+|+|+... +...+.. .... +..+.|+... +
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~------g~~~~~~------~v~~------------~~~~~D~~~~--------E 54 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYT------GKSHKIG------EVHD------------GAATMDWMEQ--------E 54 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhC------CCccccc------cccC------------CccccCCChh--------H
Confidence 56789999999999999999998532 1111100 0000 0111111111 1
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+..|.+ +....+.++. +...++||||||+.+. ...+..++..+|++|+++++.. .. ....
T Consensus 55 ~~rgit--i~~~~~~~~~---~~~~i~liDTPG~~~f-------------~~e~~~al~~~D~~ilVvDa~~-g~-~~qt 114 (691)
T PRK12739 55 QERGIT--ITSAATTCFW---KGHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVFDAVS-GV-EPQS 114 (691)
T ss_pred hhcCCC--ccceeEEEEE---CCEEEEEEcCCCHHHH-------------HHHHHHHHHHhCeEEEEEeCCC-CC-CHHH
Confidence 111322 2222233322 3457999999997542 2247888899999999998643 33 3334
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+++.+...+.|.|+++||+|+...
T Consensus 115 ~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 115 ETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 45666666778999999999999853
No 223
>PLN03127 Elongation factor Tu; Provisional
Probab=98.75 E-value=3.3e-08 Score=107.03 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=46.1
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCc-eEEEeec
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTK 212 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~r-ti~VltK 212 (610)
+..+++||||||..+ .+.+++. -+..+|+++|++++.. .. .....+.+..+...+.+ .|+|+||
T Consensus 122 ~~~~i~~iDtPGh~~------------f~~~~~~-g~~~aD~allVVda~~-g~-~~qt~e~l~~~~~~gip~iIvviNK 186 (447)
T PLN03127 122 AKRHYAHVDCPGHAD------------YVKNMIT-GAAQMDGGILVVSAPD-GP-MPQTKEHILLARQVGVPSLVVFLNK 186 (447)
T ss_pred CCeEEEEEECCCccc------------hHHHHHH-HHhhCCEEEEEEECCC-CC-chhHHHHHHHHHHcCCCeEEEEEEe
Confidence 345799999999743 2344443 3456999999997543 33 23334455555556777 4789999
Q ss_pred ccCCCC
Q 007263 213 IDLMDK 218 (610)
Q Consensus 213 ~D~~~~ 218 (610)
+|+.+.
T Consensus 187 iDlv~~ 192 (447)
T PLN03127 187 VDVVDD 192 (447)
T ss_pred eccCCH
Confidence 999853
No 224
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.74 E-value=1.6e-08 Score=89.02 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=38.8
Q ss_pred cEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH---HHHHHHhC--CCCCceEEEeec
Q 007263 138 LTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA---IKISREVD--PTGERTFGVLTK 212 (610)
Q Consensus 138 ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~---l~l~~~~~--~~~~rti~VltK 212 (610)
+.++|++|....... ...++..+|++|+|++..+... -... +..+..+. ....|+++|.||
T Consensus 52 ~~~~d~~g~~~~~~~-------------~~~~~~~~d~~ilv~D~s~~~s-~~~~~~~~~~l~~~~~~~~~~piilv~nK 117 (119)
T PF08477_consen 52 LQFWDFGGQEEFYSQ-------------HQFFLKKADAVILVYDLSDPES-LEYLSQLLKWLKNIRKRDKNIPIILVGNK 117 (119)
T ss_dssp EEEEEESSSHCHHCT-------------SHHHHHHSCEEEEEEECCGHHH-HHHHHHHHHHHHHHHHHSSCSEEEEEEE-
T ss_pred EEEEecCccceeccc-------------ccchhhcCcEEEEEEcCCChHH-HHHHHHHHHHHHHHHccCCCCCEEEEEec
Confidence 889999998543221 2233788999999998765321 1111 12233332 124999999999
Q ss_pred cc
Q 007263 213 ID 214 (610)
Q Consensus 213 ~D 214 (610)
.|
T Consensus 118 ~D 119 (119)
T PF08477_consen 118 SD 119 (119)
T ss_dssp TC
T ss_pred cC
Confidence 98
No 225
>PTZ00258 GTP-binding protein; Provisional
Probab=98.74 E-value=4.7e-08 Score=102.94 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
..-.+|++||.+|+|||||+|+|+|...-......||+-|..-.+...+. .+ ..+
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~--------------r~---~~l-------- 73 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDE--------------RF---DWL-------- 73 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccc--------------hh---hHH--------
Confidence 35568999999999999999999998753334456777775433211100 00 000
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecC
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a 183 (610)
....+. ......++.|+||||+......+ ..+.+-....++++|+|++||+..
T Consensus 74 ~~~~~~-------------~~~~~aqi~lvDtpGLv~ga~~g------~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 74 CKHFKP-------------KSIVPAQLDITDIAGLVKGASEG------EGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred HHHcCC-------------cccCCCCeEEEECCCcCcCCcch------hHHHHHHHHHHHHCCEEEEEEeCC
Confidence 000010 00012368999999998644321 222334566788999999999854
No 226
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.74 E-value=3.3e-08 Score=106.33 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=43.8
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc--cccHHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--LATSDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d--~~~~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..++|+||||..+. ...+..++..+|.+||++++.... ..+.+.+.++.... ..+.++|+||+
T Consensus 80 ~~i~liDtPGh~~f-------------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~ 144 (406)
T TIGR03680 80 RRVSFVDAPGHETL-------------MATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKI 144 (406)
T ss_pred cEEEEEECCCHHHH-------------HHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEcc
Confidence 46899999996332 223455567899999999876421 22233444443322 25689999999
Q ss_pred cCCCC
Q 007263 214 DLMDK 218 (610)
Q Consensus 214 D~~~~ 218 (610)
|+.+.
T Consensus 145 Dl~~~ 149 (406)
T TIGR03680 145 DLVSK 149 (406)
T ss_pred ccCCH
Confidence 99854
No 227
>PRK00007 elongation factor G; Reviewed
Probab=98.74 E-value=4.7e-08 Score=112.08 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
++..|+|+|..++|||||+|+|+... |...+.- .... +..+.|+... +
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~------g~~~~~g------~v~~------------~~~~~D~~~~--------E 56 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYT------GVNHKIG------EVHD------------GAATMDWMEQ--------E 56 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhc------CCccccc------cccC------------CcccCCCCHH--------H
Confidence 56799999999999999999997431 1111100 0000 0111122111 1
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+..|.+ +......++ . ....++||||||..+. ..-+...+..+|++|+|+++.. +. ....
T Consensus 57 ~~rg~t--i~~~~~~~~--~-~~~~~~liDTPG~~~f-------------~~ev~~al~~~D~~vlVvda~~-g~-~~qt 116 (693)
T PRK00007 57 QERGIT--ITSAATTCF--W-KDHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVFDAVG-GV-EPQS 116 (693)
T ss_pred HhCCCC--EeccEEEEE--E-CCeEEEEEeCCCcHHH-------------HHHHHHHHHHcCEEEEEEECCC-Cc-chhh
Confidence 112321 222222222 2 2457999999997542 1126677888999999998543 33 3344
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+++.+...+.+.|+++||+|+.+.
T Consensus 117 ~~~~~~~~~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 117 ETVWRQADKYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 55667777778999999999998854
No 228
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.73 E-value=3.6e-08 Score=99.17 Aligned_cols=124 Identities=25% Similarity=0.355 Sum_probs=77.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcc--cccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPR--GSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~--~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
-|.+||-||+||||||++++... |. +.-.+|-.| .
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~P---n-------------------------------------- 197 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVP---N-------------------------------------- 197 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC--CcccCCccccccC---c--------------------------------------
Confidence 47899999999999999999864 21 111233333 0
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc--ccHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~--~~~~ 191 (610)
.| .+.+ .....+++-|.||++..++.+-- +. .-..+.|+++..++.+++.+..+. ..++
T Consensus 198 -LG----------vV~~--~~~~sfv~ADIPGLIEGAs~G~G--LG----~~FLrHIERt~vL~hviD~s~~~~~dp~~~ 258 (369)
T COG0536 198 -LG----------VVRV--DGGESFVVADIPGLIEGASEGVG--LG----LRFLRHIERTRVLLHVIDLSPIDGRDPIED 258 (369)
T ss_pred -cc----------EEEe--cCCCcEEEecCcccccccccCCC--cc----HHHHHHHHhhheeEEEEecCcccCCCHHHH
Confidence 02 1222 33446999999999987765421 11 113456778899999998775542 1122
Q ss_pred HHHHHHHhC---C--CCCceEEEeecccCCCCCCc
Q 007263 192 AIKISREVD---P--TGERTFGVLTKIDLMDKGTD 221 (610)
Q Consensus 192 ~l~l~~~~~---~--~~~rti~VltK~D~~~~~~~ 221 (610)
...+..++. + ..++.++|+||+|+....+.
T Consensus 259 ~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~ 293 (369)
T COG0536 259 YQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE 293 (369)
T ss_pred HHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHH
Confidence 222333332 2 36899999999997655443
No 229
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.73 E-value=4.7e-08 Score=95.96 Aligned_cols=118 Identities=25% Similarity=0.347 Sum_probs=78.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccc--cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
-+|+|+|+.|+|||||++++.+..+ +.+..+ .+..|....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~------------------------------------- 47 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTI------------------------------------- 47 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEE-------------------------------------
Confidence 5899999999999999999999875 332211 112221111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc---c
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA---T 189 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~---~ 189 (610)
........+.++||+|..+. +.+...|...++.++++++....... .
T Consensus 48 -----------------~~~~~~~~~~~~Dt~gq~~~-------------~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~ 97 (219)
T COG1100 48 -----------------EPYRRNIKLQLWDTAGQEEY-------------RSLRPEYYRGANGILIVYDSTLRESSDELT 97 (219)
T ss_pred -----------------EeCCCEEEEEeecCCCHHHH-------------HHHHHHHhcCCCEEEEEEecccchhhhHHH
Confidence 00111235889999997653 67788999999999999987652211 1
Q ss_pred HHHHHHHHHhCCCCCceEEEeecccCCCCCC
Q 007263 190 SDAIKISREVDPTGERTFGVLTKIDLMDKGT 220 (610)
Q Consensus 190 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~~ 220 (610)
......++...+.+.+++.|.||+|+.....
T Consensus 98 ~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 98 EEWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred HHHHHHHHHhCCCCceEEEEecccccccchh
Confidence 2223334444545689999999999987654
No 230
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.73 E-value=4.1e-08 Score=98.99 Aligned_cols=103 Identities=19% Similarity=0.234 Sum_probs=60.1
Q ss_pred EEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhcC
Q 007263 37 IAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETG 116 (610)
Q Consensus 37 IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (610)
|++||.+|+|||||+|+|+|.+.-+.....||+-|..-...-. ... +..+. ...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~--------------d~r---~~~l~--------~~~~ 55 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVP--------------DER---LDKLA--------EIVK 55 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEec--------------cch---hhhHH--------HHhC
Confidence 5799999999999999999988633334556766643221110 000 00000 0001
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecC
Q 007263 117 RTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (610)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a 183 (610)
. . .. ...++.|+|+||+......+ ..+-+...+.++++|++++||+..
T Consensus 56 ~------~--k~-----~~~~i~lvD~pGl~~~a~~~------~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 56 P------K--KI-----VPATIEFVDIAGLVKGASKG------EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred C------c--ee-----eeeEEEEEECCCcCCCCchh------hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 0 0 00 01258999999998644321 122233556688999999999754
No 231
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.72 E-value=7.9e-08 Score=105.12 Aligned_cols=147 Identities=20% Similarity=0.238 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcc--cCChHHHHHHHHH
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR--FTDFAAVRKEIQD 109 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~i~~ 109 (610)
....+|+|||..++|||||+++|+... +..++.-+ .... .-....+.. -.++..+.+...+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~------g~i~~~~~----~~~~-------~~~~~~g~~~~~~~~a~~~D~~~e 87 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDT------KQIYEDQL----ASLH-------NDSKRHGTQGEKLDLALLVDGLQA 87 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhc------CCCcHHHH----HHHH-------HHHHhcCCCccccchhhhccCChH
Confidence 356899999999999999999999753 22222100 0000 000000000 0011111111112
Q ss_pred HhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-
Q 007263 110 ETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA- 188 (610)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~- 188 (610)
+..+ | ++-+.- ......+..+++||||||..+ .+.+++.. +..+|+++||+++.. ...
T Consensus 88 Er~r--g----iTid~~-~~~~~~~~~~i~~iDTPGh~~------------f~~~~~~~-l~~aD~allVVDa~~-G~~~ 146 (474)
T PRK05124 88 EREQ--G----ITIDVA-YRYFSTEKRKFIIADTPGHEQ------------YTRNMATG-ASTCDLAILLIDARK-GVLD 146 (474)
T ss_pred Hhhc--C----CCeEee-EEEeccCCcEEEEEECCCcHH------------HHHHHHHH-HhhCCEEEEEEECCC-Cccc
Confidence 2221 3 222221 222334456899999999422 22344443 689999999998643 222
Q ss_pred -cHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 189 -TSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 189 -~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
+.+.+.++..+.. .+.|+|+||+|+.+.
T Consensus 147 qt~~~~~l~~~lg~--~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 147 QTRRHSFIATLLGI--KHLVVAVNKMDLVDY 175 (474)
T ss_pred cchHHHHHHHHhCC--CceEEEEEeeccccc
Confidence 2344445554431 478899999999853
No 232
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.72 E-value=2e-08 Score=114.20 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=44.9
Q ss_pred CCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC-ccccHHHHHHHHHhCCCCCceEEEee
Q 007263 133 PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISREVDPTGERTFGVLT 211 (610)
Q Consensus 133 ~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~-d~~~~~~l~l~~~~~~~~~rti~Vlt 211 (610)
.+..+++||||||..+ .+..++ ..+..+|+++|||++... ...+.+.+.++..+. -.+.|+|+|
T Consensus 101 ~~~~~~~liDtPG~~~------------f~~~~~-~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~--~~~iivvvN 165 (632)
T PRK05506 101 TPKRKFIVADTPGHEQ------------YTRNMV-TGASTADLAIILVDARKGVLTQTRRHSFIASLLG--IRHVVLAVN 165 (632)
T ss_pred cCCceEEEEECCChHH------------HHHHHH-HHHHhCCEEEEEEECCCCccccCHHHHHHHHHhC--CCeEEEEEE
Confidence 3456799999999532 223333 357899999999876432 112234444555442 157888999
Q ss_pred cccCCC
Q 007263 212 KIDLMD 217 (610)
Q Consensus 212 K~D~~~ 217 (610)
|+|+.+
T Consensus 166 K~D~~~ 171 (632)
T PRK05506 166 KMDLVD 171 (632)
T ss_pred eccccc
Confidence 999975
No 233
>PRK10218 GTP-binding protein; Provisional
Probab=98.72 E-value=9e-08 Score=106.93 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=49.0
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecc
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
+...+.||||||..+. ...+..+++.+|++|||+++... ...+ ....++.+...+.|.++|+||+
T Consensus 66 ~~~~inliDTPG~~df-------------~~~v~~~l~~aDg~ILVVDa~~G-~~~q-t~~~l~~a~~~gip~IVviNKi 130 (607)
T PRK10218 66 NDYRINIVDTPGHADF-------------GGEVERVMSMVDSVLLVVDAFDG-PMPQ-TRFVTKKAFAYGLKPIVVINKV 130 (607)
T ss_pred CCEEEEEEECCCcchh-------------HHHHHHHHHhCCEEEEEEecccC-ccHH-HHHHHHHHHHcCCCEEEEEECc
Confidence 3457999999997653 34567889999999999987542 2222 2223344444678999999999
Q ss_pred cCCC
Q 007263 214 DLMD 217 (610)
Q Consensus 214 D~~~ 217 (610)
|...
T Consensus 131 D~~~ 134 (607)
T PRK10218 131 DRPG 134 (607)
T ss_pred CCCC
Confidence 9864
No 234
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.70 E-value=6.4e-08 Score=108.23 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=48.7
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
...++||||||..+. ...+..+++.+|.++|||++.. +.. .....+++.+...+.|.|+|+||+|
T Consensus 63 ~~kinlIDTPGh~DF-------------~~ev~~~l~~aD~alLVVDa~~-G~~-~qT~~~l~~a~~~~ip~IVviNKiD 127 (594)
T TIGR01394 63 GTKINIVDTPGHADF-------------GGEVERVLGMVDGVLLLVDASE-GPM-PQTRFVLKKALELGLKPIVVINKID 127 (594)
T ss_pred CEEEEEEECCCHHHH-------------HHHHHHHHHhCCEEEEEEeCCC-CCc-HHHHHHHHHHHHCCCCEEEEEECCC
Confidence 457999999997553 3446788999999999998754 222 2223344444456789999999999
Q ss_pred CCC
Q 007263 215 LMD 217 (610)
Q Consensus 215 ~~~ 217 (610)
+..
T Consensus 128 ~~~ 130 (594)
T TIGR01394 128 RPS 130 (594)
T ss_pred CCC
Confidence 864
No 235
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=5.5e-08 Score=85.48 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=80.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
-.|.|+|+.++||+|++-+..|..|-|. .++.+
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~a---fvsTv-------------------------------------------- 54 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSA---FVSTV-------------------------------------------- 54 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccc---eeeee--------------------------------------------
Confidence 3799999999999999999999887221 01101
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~ 192 (610)
| ..|..+.+ ..+.....+.++||.|..+. +.++-.|++.++.+||+.+.+|....+ ++.
T Consensus 55 -G--idFKvKTv---yr~~kRiklQiwDTagqEry-------------rtiTTayyRgamgfiLmyDitNeeSf~svqdw 115 (193)
T KOG0093|consen 55 -G--IDFKVKTV---YRSDKRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFILMYDITNEESFNSVQDW 115 (193)
T ss_pred -e--eeEEEeEe---eecccEEEEEEEecccchhh-------------hHHHHHHhhccceEEEEEecCCHHHHHHHHHH
Confidence 1 00111110 11112246889999997663 778899999999999999988754322 233
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
....+.+.-.+.++|+|.||||+-++.
T Consensus 116 ~tqIktysw~naqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 116 ITQIKTYSWDNAQVILVGNKCDMDSER 142 (193)
T ss_pred HHHheeeeccCceEEEEecccCCccce
Confidence 334455555679999999999986543
No 236
>PRK12735 elongation factor Tu; Reviewed
Probab=98.70 E-value=4e-08 Score=105.33 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=45.1
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceE-EEeec
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTF-GVLTK 212 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti-~VltK 212 (610)
+..+++||||||..+ .+..+ ...+..+|.++|++++.. ... ......+..+...+.+.+ +|+||
T Consensus 73 ~~~~i~~iDtPGh~~------------f~~~~-~~~~~~aD~~llVvda~~-g~~-~qt~e~l~~~~~~gi~~iivvvNK 137 (396)
T PRK12735 73 ANRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAILVVSAAD-GPM-PQTREHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred CCcEEEEEECCCHHH------------HHHHH-HhhhccCCEEEEEEECCC-CCc-hhHHHHHHHHHHcCCCeEEEEEEe
Confidence 445789999999632 22333 355678999999998653 222 223334444455577765 57999
Q ss_pred ccCCCC
Q 007263 213 IDLMDK 218 (610)
Q Consensus 213 ~D~~~~ 218 (610)
+|+.++
T Consensus 138 ~Dl~~~ 143 (396)
T PRK12735 138 CDMVDD 143 (396)
T ss_pred cCCcch
Confidence 999853
No 237
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.69 E-value=1.1e-07 Score=104.95 Aligned_cols=137 Identities=15% Similarity=0.250 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+...|+|+|..++|||||+|+|+-.. |...+.+. +. .. + .......|+... +
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~------g~i~~~g~-v~---~~-g---------~~~~t~~D~~~~--------E 61 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYG------GAIQTAGA-VK---GR-G---------SQRHAKSDWMEM--------E 61 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhC------CCccccce-ec---cc-c---------ccccccCCCCHH--------H
Confidence 56799999999999999999996422 11122210 00 00 0 000011122211 1
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+..| ..+....+.+ ..+...+.|+||||..+. ...+..++..+|++|+|+++... .. ...
T Consensus 62 ~~rg--isi~~~~~~~---~~~~~~inliDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~~g-v~-~~t 121 (527)
T TIGR00503 62 KQRG--ISITTSVMQF---PYRDCLVNLLDTPGHEDF-------------SEDTYRTLTAVDNCLMVIDAAKG-VE-TRT 121 (527)
T ss_pred HhcC--CcEEEEEEEE---eeCCeEEEEEECCChhhH-------------HHHHHHHHHhCCEEEEEEECCCC-CC-HHH
Confidence 1112 1222222222 224467999999998542 23467788999999999987652 22 222
Q ss_pred HHHHHHhCCCCCceEEEeecccCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
..+.+.....+.|+++|+||+|+..
T Consensus 122 ~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 122 RKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHHHHHhcCCCEEEEEECccccC
Confidence 3344444446789999999999863
No 238
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.67 E-value=1.1e-07 Score=109.53 Aligned_cols=135 Identities=18% Similarity=0.319 Sum_probs=78.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.+..|+|+|..++|||||+++|+... |..++.- .+ .....|+... +
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~------g~i~~~~---------~~-----------~~~~~d~~~~--------e 63 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGA------GMISEEL---------AG-----------QQLYLDFDEQ--------E 63 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCCchhc---------CC-----------ceeecCCCHH--------H
Confidence 56899999999999999999998532 2211110 00 0011111110 1
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+..|.+...+....... ......++.||||||..+. ...+..++..+|++|+++++.. .+ ....
T Consensus 64 ~~rg~Ti~~~~~~~~~~-~~~~~~~i~liDTPG~~~f-------------~~~~~~al~~aD~~llVvda~~-g~-~~~t 127 (720)
T TIGR00490 64 QERGITINAANVSMVHE-YEGNEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVVCAVE-GV-MPQT 127 (720)
T ss_pred HhhcchhhcccceeEEe-ecCCceEEEEEeCCCcccc-------------HHHHHHHHHhcCEEEEEEecCC-CC-CccH
Confidence 11122221111111111 2233457999999999763 2346788999999999997643 22 2233
Q ss_pred HHHHHHhCCCCCceEEEeecccCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
..+++.+...+.+.++|+||+|...
T Consensus 128 ~~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 128 ETVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred HHHHHHHHHcCCCEEEEEEChhccc
Confidence 3445555455678899999999863
No 239
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.67 E-value=3.1e-08 Score=107.47 Aligned_cols=68 Identities=16% Similarity=0.319 Sum_probs=43.5
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc----cHHHHHHHHHhCCCCCceEEEe
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA----TSDAIKISREVDPTGERTFGVL 210 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~----~~~~l~l~~~~~~~~~rti~Vl 210 (610)
...++|+||||..+ .+.. ...++..+|++|||+++.+.++. +.+.+.+++... ..++|+|+
T Consensus 84 ~~~i~iiDtpGh~~------------f~~~-~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~--~~~iIVvi 148 (426)
T TIGR00483 84 KYEVTIVDCPGHRD------------FIKN-MITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG--INQLIVAI 148 (426)
T ss_pred CeEEEEEECCCHHH------------HHHH-HHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC--CCeEEEEE
Confidence 45799999999432 1222 34457889999999987654211 122223444332 25789999
Q ss_pred ecccCCC
Q 007263 211 TKIDLMD 217 (610)
Q Consensus 211 tK~D~~~ 217 (610)
||+|+.+
T Consensus 149 NK~Dl~~ 155 (426)
T TIGR00483 149 NKMDSVN 155 (426)
T ss_pred EChhccC
Confidence 9999974
No 240
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.67 E-value=1.7e-07 Score=97.22 Aligned_cols=149 Identities=17% Similarity=0.235 Sum_probs=84.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
.|.|||+-++|||||+|+++|.-++|.=+..--|- ..++++ ..-..
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~-------------------------------Ra~DEL---pqs~~ 64 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKE-------------------------------RAQDEL---PQSAA 64 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHh-------------------------------HHHhcc---CcCCC
Confidence 68999999999999999999996666533110000 000000 00011
Q ss_pred CC---C---CccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchH----------------HHHHHHHHHHhc-C
Q 007263 116 GR---T---KQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIV----------------QDIENMVRSYIE-K 172 (610)
Q Consensus 116 g~---~---~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~----------------~~i~~~~~~yi~-~ 172 (610)
|+ + +-+-...+.+.....-..++.||||+|+.....-|.-+.-. +..+==+++-+. +
T Consensus 65 GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dh 144 (492)
T TIGR02836 65 GKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEH 144 (492)
T ss_pred CCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhc
Confidence 21 0 11122333443333333579999999998765544322111 011111566677 7
Q ss_pred CCeEEEEeecCC-Cccc----cHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 173 PNCIILAISPAN-QDLA----TSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 173 ~d~iil~v~~a~-~d~~----~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
++..|+++.+++ .|+. .....++..++...+.|.++|+||.|-..+
T Consensus 145 stIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~ 195 (492)
T TIGR02836 145 STIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHP 195 (492)
T ss_pred CcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCc
Confidence 887777763432 1111 223445778888889999999999995433
No 241
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.67 E-value=6e-08 Score=96.35 Aligned_cols=155 Identities=16% Similarity=0.212 Sum_probs=103.2
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHH
Q 007263 30 LWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQD 109 (610)
Q Consensus 30 ~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 109 (610)
.....|.|+|||-.|+|||||+++|++..++|.+.-..|--||.=.
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~---------------------------------- 219 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHS---------------------------------- 219 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhh----------------------------------
Confidence 3458899999999999999999999999999988777666552100
Q ss_pred HhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc
Q 007263 110 ETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT 189 (610)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~ 189 (610)
..-|......+.||-||.+. -|-.+....+. +..-+..+|.|+.+++.++.++..
T Consensus 220 --------------------a~Lpsg~~vlltDTvGFisd----LP~~LvaAF~A-TLeeVaeadlllHvvDiShP~ae~ 274 (410)
T KOG0410|consen 220 --------------------AHLPSGNFVLLTDTVGFISD----LPIQLVAAFQA-TLEEVAEADLLLHVVDISHPNAEE 274 (410)
T ss_pred --------------------ccCCCCcEEEEeechhhhhh----CcHHHHHHHHH-HHHHHhhcceEEEEeecCCccHHH
Confidence 11223345789999999863 23335555544 566688999999999988877665
Q ss_pred HH--HHHHHHHhCC----CCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 190 SD--AIKISREVDP----TGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 190 ~~--~l~l~~~~~~----~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
+. .+..++.++- ...++|=|=||+|..+.. ......+-+++++....+.++...
T Consensus 275 q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~----------~e~E~n~~v~isaltgdgl~el~~ 334 (410)
T KOG0410|consen 275 QRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE----------VEEEKNLDVGISALTGDGLEELLK 334 (410)
T ss_pred HHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc----------CccccCCccccccccCccHHHHHH
Confidence 53 4445555542 345677777888865332 122234456666666555544333
No 242
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.66 E-value=1.3e-07 Score=98.59 Aligned_cols=102 Identities=21% Similarity=0.301 Sum_probs=61.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
.+|++||.+|+|||||+|+|+|...-......||+-|..-.+.-.++ . ++.+. .
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~--------------r---~~~l~--------~- 56 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDP--------------R---LDKLA--------E- 56 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccc--------------c---chhhH--------H-
Confidence 58999999999999999999998742223345677764322111100 0 00000 0
Q ss_pred cCCCCccccccEEEEEecCC--C-CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecC
Q 007263 115 TGRTKQISSVPIHLSIYSPN--V-VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~--~-~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a 183 (610)
++.|. . ..+.|+|+||+......+ ..+-+-....++++|++++||+..
T Consensus 57 ---------------~~~p~~~~~a~i~lvD~pGL~~~a~~g------~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 57 ---------------IVKPKKIVPATIEFVDIAGLVKGASKG------EGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ---------------hcCCccccCceEEEEECCCCCCCCChH------HHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11111 1 258999999998643321 223344566688999999999754
No 243
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.66 E-value=1.4e-07 Score=87.87 Aligned_cols=99 Identities=8% Similarity=0.026 Sum_probs=55.5
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HHHHHHHHhC-CCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVD-PTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~l~l~~~~~-~~~~rti~VltK~ 213 (610)
.+.++||+|... ..|.+.+|++++|++..+.+.... ..+..+.... ..+.|+++|.||.
T Consensus 48 ~l~i~D~~g~~~------------------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~ 109 (158)
T cd04103 48 LLLIRDEGGAPD------------------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQD 109 (158)
T ss_pred EEEEEECCCCCc------------------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHH
Confidence 588999999732 246678999999998765432111 1222222222 2457999999999
Q ss_pred cCCCCCC-cH-HHHHcCccccc-CCCeeEeeeCChhhhhcccc
Q 007263 214 DLMDKGT-DA-ADILEGKSYRL-KFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 214 D~~~~~~-~~-~~~l~~~~~~l-~~g~~~v~~~s~~~~~~~~~ 253 (610)
|+..... .. .+......... ...|+.+++.+..++++.+.
T Consensus 110 Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~ 152 (158)
T cd04103 110 AISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQ 152 (158)
T ss_pred HhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHH
Confidence 9753211 11 11101111112 24677777777666655443
No 244
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.66 E-value=9.5e-08 Score=94.38 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=45.1
Q ss_pred cCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCc-eEEEe
Q 007263 132 SPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVL 210 (610)
Q Consensus 132 ~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~r-ti~Vl 210 (610)
.+....++++||||.. .. +...++.+|++++++++.. +... ....++..+...|.+ +++|+
T Consensus 79 ~~~~~~i~~vDtPg~~---------------~~-~l~~ak~aDvVllviDa~~-~~~~-~~~~i~~~l~~~g~p~vi~Vv 140 (225)
T cd01882 79 TGKKRRLTFIECPNDI---------------NA-MIDIAKVADLVLLLIDASF-GFEM-ETFEFLNILQVHGFPRVMGVL 140 (225)
T ss_pred ecCCceEEEEeCCchH---------------HH-HHHHHHhcCEEEEEEecCc-CCCH-HHHHHHHHHHHcCCCeEEEEE
Confidence 3456679999999842 11 2344678999999987653 3322 233455555555666 45699
Q ss_pred ecccCCCCC
Q 007263 211 TKIDLMDKG 219 (610)
Q Consensus 211 tK~D~~~~~ 219 (610)
||+|++.+.
T Consensus 141 nK~D~~~~~ 149 (225)
T cd01882 141 THLDLFKKN 149 (225)
T ss_pred eccccCCcH
Confidence 999998543
No 245
>PLN00023 GTP-binding protein; Provisional
Probab=98.64 E-value=1.2e-07 Score=96.87 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=46.5
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCC---------------
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP--------------- 201 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~--------------- 201 (610)
.+.|+||+|-.+. +.+...|+++++++|+|++.++.+.. .....++..+..
T Consensus 84 ~LqIWDTAGqErf-------------rsL~~~yyr~AdgiILVyDITdr~SF-enL~kWl~eI~~~~~~s~p~~s~~~~~ 149 (334)
T PLN00023 84 FVELWDVSGHERY-------------KDCRSLFYSQINGVIFVHDLSQRRTK-TSLQKWASEVAATGTFSAPLGSGGPGG 149 (334)
T ss_pred EEEEEECCCChhh-------------hhhhHHhccCCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcccccccccccccC
Confidence 4789999997543 56788899999999999987664321 111123332221
Q ss_pred CCCceEEEeecccCCCC
Q 007263 202 TGERTFGVLTKIDLMDK 218 (610)
Q Consensus 202 ~~~rti~VltK~D~~~~ 218 (610)
...++++|.||+|+...
T Consensus 150 ~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 150 LPVPYIVIGNKADIAPK 166 (334)
T ss_pred CCCcEEEEEECcccccc
Confidence 13689999999998643
No 246
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.64 E-value=7.5e-08 Score=82.63 Aligned_cols=30 Identities=33% Similarity=0.550 Sum_probs=26.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~ 64 (610)
-+|++||..|+||+||.++|-|.+.+++.+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKT 31 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKT 31 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhccc
Confidence 479999999999999999999998876654
No 247
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.64 E-value=1.4e-07 Score=108.72 Aligned_cols=133 Identities=14% Similarity=0.262 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+...|+|+|..++|||||+++|+... |..++.- . ....+.|+... +
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~~--------~------------g~~~~~D~~~~--------E 64 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEEL--------A------------GEQLALDFDEE--------E 64 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchhh--------c------------CcceecCccHH--------H
Confidence 57889999999999999999998643 2222210 0 00111222211 1
Q ss_pred hhcCCCCccccccEEEEEe-cCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH
Q 007263 113 RETGRTKQISSVPIHLSIY-SPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~-~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~ 191 (610)
+..|.+ +....+.+... ......++||||||..+. ...+...+..+|++|+||++.. +.. ..
T Consensus 65 ~~rgiT--i~~~~~~~~~~~~~~~~~i~liDtPG~~df-------------~~~~~~~l~~~D~avlVvda~~-g~~-~~ 127 (731)
T PRK07560 65 QARGIT--IKAANVSMVHEYEGKEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVVDAVE-GVM-PQ 127 (731)
T ss_pred HHhhhh--hhccceEEEEEecCCcEEEEEEcCCCccCh-------------HHHHHHHHHhcCEEEEEEECCC-CCC-cc
Confidence 111221 22222222221 223446899999998763 2346778899999999998654 222 22
Q ss_pred HHHHHHHhCCCCCceEEEeecccCC
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLM 216 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~ 216 (610)
...+++.+...+.+.|+++||+|..
T Consensus 128 t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 128 TETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHHHHHHcCCCeEEEEECchhh
Confidence 3334444444467889999999976
No 248
>PRK00049 elongation factor Tu; Reviewed
Probab=98.63 E-value=8e-08 Score=102.99 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=45.5
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceE-EEeec
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTF-GVLTK 212 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti-~VltK 212 (610)
+..+++||||||..+ .+..+ ...+..+|++++++++.. .. ......++..+...+.+.+ +++||
T Consensus 73 ~~~~i~~iDtPG~~~------------f~~~~-~~~~~~aD~~llVVDa~~-g~-~~qt~~~~~~~~~~g~p~iiVvvNK 137 (396)
T PRK00049 73 EKRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAILVVSAAD-GP-MPQTREHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred CCeEEEEEECCCHHH------------HHHHH-HhhhccCCEEEEEEECCC-CC-chHHHHHHHHHHHcCCCEEEEEEee
Confidence 445799999999732 22333 345789999999998653 22 2333334444455567875 68999
Q ss_pred ccCCC
Q 007263 213 IDLMD 217 (610)
Q Consensus 213 ~D~~~ 217 (610)
+|+.+
T Consensus 138 ~D~~~ 142 (396)
T PRK00049 138 CDMVD 142 (396)
T ss_pred cCCcc
Confidence 99975
No 249
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.62 E-value=1.3e-07 Score=101.34 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=72.1
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
-.|+++|..++|||||+++|++.- ...|.+-. . .+ .+.+... .++.
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~~~--~--------------~~---------------~~~d~~~--~E~~ 58 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVL-AKEGGAAA--R--------------AY---------------DQIDNAP--EEKA 58 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhH-HHhhcccc--c--------------cc---------------ccccCCH--HHHh
Confidence 469999999999999999998751 11111100 0 00 0000000 0122
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~ 194 (610)
.|.+ .+...+.... ...+++||||||..+ .+.++ ...+..+|.++|++++.. .. .....+
T Consensus 59 rG~T----i~~~~~~~~~-~~~~~~liDtpGh~~------------f~~~~-~~~~~~~D~~ilVvda~~-g~-~~qt~e 118 (394)
T TIGR00485 59 RGIT----INTAHVEYET-ENRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAILVVSATD-GP-MPQTRE 118 (394)
T ss_pred cCcc----eeeEEEEEcC-CCEEEEEEECCchHH------------HHHHH-HHHHhhCCEEEEEEECCC-CC-cHHHHH
Confidence 2433 2223333322 334689999999643 22333 334568899999987653 22 223334
Q ss_pred HHHHhCCCCCceE-EEeecccCCCC
Q 007263 195 ISREVDPTGERTF-GVLTKIDLMDK 218 (610)
Q Consensus 195 l~~~~~~~~~rti-~VltK~D~~~~ 218 (610)
.+..+...+.+.+ +|+||+|+.++
T Consensus 119 ~l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 119 HILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHHcCCCEEEEEEEecccCCH
Confidence 4444444567755 68999999854
No 250
>PLN03126 Elongation factor Tu; Provisional
Probab=98.61 E-value=1.2e-07 Score=103.19 Aligned_cols=70 Identities=20% Similarity=0.194 Sum_probs=46.1
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCc-eEEEeec
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTK 212 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~r-ti~VltK 212 (610)
....++||||||..+ .+.++ ...+..+|+++||+++.. ... ....+.+..+...|.+ .|+|+||
T Consensus 142 ~~~~i~liDtPGh~~------------f~~~~-~~g~~~aD~ailVVda~~-G~~-~qt~e~~~~~~~~gi~~iIvvvNK 206 (478)
T PLN03126 142 ENRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAILVVSGAD-GPM-PQTKEHILLAKQVGVPNMVVFLNK 206 (478)
T ss_pred CCcEEEEEECCCHHH------------HHHHH-HHHHhhCCEEEEEEECCC-CCc-HHHHHHHHHHHHcCCCeEEEEEec
Confidence 345799999999643 22333 445678999999987553 222 2233344445555776 7789999
Q ss_pred ccCCCC
Q 007263 213 IDLMDK 218 (610)
Q Consensus 213 ~D~~~~ 218 (610)
+|+.+.
T Consensus 207 ~Dl~~~ 212 (478)
T PLN03126 207 QDQVDD 212 (478)
T ss_pred ccccCH
Confidence 999863
No 251
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.61 E-value=7.4e-07 Score=82.21 Aligned_cols=150 Identities=16% Similarity=0.142 Sum_probs=90.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
..-..|+|+|.+++||+|++.+++.... ++=.+..+..-.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~-v~t~~~~~~~s~--------------------------------------- 47 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPL-VITEADASSVSG--------------------------------------- 47 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhcccc-ceeecccccccc---------------------------------------
Confidence 4678999999999999999999998752 221111111000
Q ss_pred hhhcC-CCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH
Q 007263 112 DRETG-RTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (610)
Q Consensus 112 ~~~~g-~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~ 190 (610)
.+ ....++-+.-.+++. +...+.|+||||..+. +-|+.-+.+.+..+|++|+.+. ..+.
T Consensus 48 ---k~kr~tTva~D~g~~~~~--~~~~v~LfgtPGq~RF-------------~fm~~~l~~ga~gaivlVDss~--~~~~ 107 (187)
T COG2229 48 ---KGKRPTTVAMDFGSIELD--EDTGVHLFGTPGQERF-------------KFMWEILSRGAVGAIVLVDSSR--PITF 107 (187)
T ss_pred ---ccccceeEeecccceEEc--CcceEEEecCCCcHHH-------------HHHHHHHhCCcceEEEEEecCC--Ccch
Confidence 00 001111111122221 2346899999998764 6677888899999988887553 2233
Q ss_pred HHHHHHHHhCCCC-CceEEEeecccCCCCCC--cHHHHHcCcccccCCCeeEeeeC
Q 007263 191 DAIKISREVDPTG-ERTFGVLTKIDLMDKGT--DAADILEGKSYRLKFPWIGVVNR 243 (610)
Q Consensus 191 ~~l~l~~~~~~~~-~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~v~~~ 243 (610)
.+..+...+.... .|.++.+||.|+.+... ...+.+.-.. +..+.++...+
T Consensus 108 ~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~--~~~~vi~~~a~ 161 (187)
T COG2229 108 HAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL--LSVPVIEIDAT 161 (187)
T ss_pred HHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc--CCCceeeeecc
Confidence 5566666666555 89999999999976533 3445443211 34555555544
No 252
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.60 E-value=1.3e-07 Score=88.99 Aligned_cols=118 Identities=19% Similarity=0.353 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+-|.|+++|..+||||+|+..|....+. .++|.......
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~----~T~tS~e~n~~------------------------------------- 40 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTV----PTVTSMENNIA------------------------------------- 40 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEE-------------------------------------
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcC----CeeccccCCce-------------------------------------
Confidence 3589999999999999999999976432 22222210000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHH--HhcCCCeEEEEeecCCCccccH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRS--YIEKPNCIILAISPANQDLATS 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~--yi~~~d~iil~v~~a~~d~~~~ 190 (610)
..+..+....+.+||+||..+.. ..+... |+..+.+||++|+++...-.-.
T Consensus 41 ---------------~~~~~~~~~~~~lvD~PGH~rlr------------~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~ 93 (181)
T PF09439_consen 41 ---------------YNVNNSKGKKLRLVDIPGHPRLR------------SKLLDELKYLSNAKGIIFVVDSSTDQKELR 93 (181)
T ss_dssp ---------------CCGSSTCGTCECEEEETT-HCCC------------HHHHHHHHHHGGEEEEEEEEETTTHHHHHH
T ss_pred ---------------EEeecCCCCEEEEEECCCcHHHH------------HHHHHhhhchhhCCEEEEEEeCccchhhHH
Confidence 00112234578999999987642 223333 6889999999999764211111
Q ss_pred HHHHH------HHHhCCCCCceEEEeecccCCCC
Q 007263 191 DAIKI------SREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 191 ~~l~l------~~~~~~~~~rti~VltK~D~~~~ 218 (610)
++.++ .....+.+.|++++.||.|+...
T Consensus 94 ~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 94 DVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred HHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 21111 12334678999999999998754
No 253
>PRK13351 elongation factor G; Reviewed
Probab=98.60 E-value=2.5e-07 Score=106.36 Aligned_cols=134 Identities=19% Similarity=0.279 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+...|+|+|..++|||||+++|+... +...+.- .+ .. +....|+... +
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~------g~~~~~~-~v-----~~------------~~~~~d~~~~--------e 54 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYT------GKIHKMG-EV-----ED------------GTTVTDWMPQ--------E 54 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhc------CCccccc-cc-----cC------------CcccCCCCHH--------H
Confidence 56789999999999999999998542 1111100 00 00 0111122111 1
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+..|.+ +......+.. ....++||||||..+. ...+..+++.+|++|+++++.... ....
T Consensus 55 ~~r~~t--i~~~~~~~~~---~~~~i~liDtPG~~df-------------~~~~~~~l~~aD~~ilVvd~~~~~--~~~~ 114 (687)
T PRK13351 55 QERGIT--IESAATSCDW---DNHRINLIDTPGHIDF-------------TGEVERSLRVLDGAVVVFDAVTGV--QPQT 114 (687)
T ss_pred HhcCCC--cccceEEEEE---CCEEEEEEECCCcHHH-------------HHHHHHHHHhCCEEEEEEeCCCCC--CHHH
Confidence 111221 2222233322 3457999999998653 445788899999999999865432 2233
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+...+...+.|.++|+||+|+...
T Consensus 115 ~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 115 ETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 34455556668999999999998743
No 254
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.60 E-value=3.4e-07 Score=89.79 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=59.1
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHH---HHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS---REVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~---~~~~~~~~rti~VltK 212 (610)
..+.++||||..+. ..+...|+..++++|++++..+... -.....+. .... ...++++|.||
T Consensus 58 i~i~~~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~-~~~~i~lv~nK 122 (215)
T PTZ00132 58 ICFNVWDTAGQEKF-------------GGLRDGYYIKGQCAIIMFDVTSRIT-YKNVPNWHRDIVRVC-ENIPIVLVGNK 122 (215)
T ss_pred EEEEEEECCCchhh-------------hhhhHHHhccCCEEEEEEECcCHHH-HHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 35789999996432 3445678889999999987654221 11111121 2222 35788899999
Q ss_pred ccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHH
Q 007263 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
+|+.+..... +... .....+..|+.+++.+..+++.....+.
T Consensus 123 ~Dl~~~~~~~-~~~~-~~~~~~~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 123 VDVKDRQVKA-RQIT-FHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred ccCccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9986432111 1111 1122345677777777666655444333
No 255
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.60 E-value=8.8e-08 Score=84.31 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=53.6
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc---HHHHHHHHHhCCCCCceEEEe
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SDAIKISREVDPTGERTFGVL 210 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~---~~~l~l~~~~~~~~~rti~Vl 210 (610)
+...+.++|+||--+. +.|...|.+..++|+++|+++..+-.+ ++-..++..-.-.|.|+++.-
T Consensus 63 gnvtiklwD~gGq~rf-------------rsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLG 129 (186)
T KOG0075|consen 63 GNVTIKLWDLGGQPRF-------------RSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLG 129 (186)
T ss_pred CceEEEEEecCCCccH-------------HHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEec
Confidence 4456789999997653 889999999999999999988754222 222233333333589999999
Q ss_pred ecccCCCCC
Q 007263 211 TKIDLMDKG 219 (610)
Q Consensus 211 tK~D~~~~~ 219 (610)
||.|+-+.-
T Consensus 130 nK~d~~~AL 138 (186)
T KOG0075|consen 130 NKIDLPGAL 138 (186)
T ss_pred ccccCcccc
Confidence 999986543
No 256
>PRK12736 elongation factor Tu; Reviewed
Probab=98.60 E-value=1.9e-07 Score=100.07 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=44.6
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCc-eEEEeec
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTK 212 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~r-ti~VltK 212 (610)
+..+++||||||..+ .+..+ ..-+..+|++++|+++.. ... ......+..+...|.+ .|+|+||
T Consensus 73 ~~~~i~~iDtPGh~~------------f~~~~-~~~~~~~d~~llVvd~~~-g~~-~~t~~~~~~~~~~g~~~~IvviNK 137 (394)
T PRK12736 73 EKRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAILVVAATD-GPM-PQTREHILLARQVGVPYLVVFLNK 137 (394)
T ss_pred CCcEEEEEECCCHHH------------HHHHH-HHHHhhCCEEEEEEECCC-CCc-hhHHHHHHHHHHcCCCEEEEEEEe
Confidence 445789999999532 22333 333578999999987543 222 2233344444445777 6788999
Q ss_pred ccCCCC
Q 007263 213 IDLMDK 218 (610)
Q Consensus 213 ~D~~~~ 218 (610)
+|+.++
T Consensus 138 ~D~~~~ 143 (394)
T PRK12736 138 VDLVDD 143 (394)
T ss_pred cCCcch
Confidence 999743
No 257
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.1e-07 Score=83.64 Aligned_cols=122 Identities=19% Similarity=0.323 Sum_probs=86.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
.-|-.||+||..++||+-|+..++.- +||-|.|.+--.-..+.
T Consensus 5 kflfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfmik------------------------------------ 47 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIK------------------------------------ 47 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEE------------------------------------
Confidence 35779999999999999999999975 57888775433332222
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-cc-c
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-T 189 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~~-~ 189 (610)
.+++.+ +...|.++||.|-.+. ++++.+|.+.++++||+.+.+.+. +. .
T Consensus 48 ---------------tvev~g-ekiklqiwdtagqerf-------------rsitqsyyrsahalilvydiscqpsfdcl 98 (213)
T KOG0095|consen 48 ---------------TVEVNG-EKIKLQIWDTAGQERF-------------RSITQSYYRSAHALILVYDISCQPSFDCL 98 (213)
T ss_pred ---------------EEEECC-eEEEEEEeeccchHHH-------------HHHHHHHhhhcceEEEEEecccCcchhhh
Confidence 122211 2236889999997654 888999999999999998765432 22 1
Q ss_pred HHHHHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 190 SDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 190 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
.+++.-..+......-.|.|-||+|+.+..
T Consensus 99 pewlreie~yan~kvlkilvgnk~d~~drr 128 (213)
T KOG0095|consen 99 PEWLREIEQYANNKVLKILVGNKIDLADRR 128 (213)
T ss_pred HHHHHHHHHHhhcceEEEeeccccchhhhh
Confidence 344444555555567788999999987654
No 258
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.57 E-value=3.7e-07 Score=98.27 Aligned_cols=67 Identities=22% Similarity=0.233 Sum_probs=40.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc--cccHHHHHHHHHhCCCC-CceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--LATSDAIKISREVDPTG-ERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d--~~~~~~l~l~~~~~~~~-~rti~VltK 212 (610)
..++|+||||..+ .+. .+...+..+|++++++++.... ..+.+.+.++. ..+ .+.++|+||
T Consensus 85 ~~i~liDtPG~~~------------f~~-~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~---~~~i~~iiVVlNK 148 (411)
T PRK04000 85 RRVSFVDAPGHET------------LMA-TMLSGAALMDGAILVIAANEPCPQPQTKEHLMALD---IIGIKNIVIVQNK 148 (411)
T ss_pred cEEEEEECCCHHH------------HHH-HHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHH---HcCCCcEEEEEEe
Confidence 4689999999422 111 1233345679999999866421 12223333333 333 468999999
Q ss_pred ccCCCC
Q 007263 213 IDLMDK 218 (610)
Q Consensus 213 ~D~~~~ 218 (610)
+|+.+.
T Consensus 149 ~Dl~~~ 154 (411)
T PRK04000 149 IDLVSK 154 (411)
T ss_pred eccccc
Confidence 999864
No 259
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.55 E-value=3.2e-07 Score=99.32 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=42.8
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC--ccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--DLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~--d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
.++||||||..+ .+++| ..-+..+|.++|||++... ...+.+.+.++..+. -.+.|+|+||+|
T Consensus 118 ~i~~IDtPGH~~------------fi~~m-~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiD 182 (460)
T PTZ00327 118 HVSFVDCPGHDI------------LMATM-LNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKID 182 (460)
T ss_pred eEeeeeCCCHHH------------HHHHH-HHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEeccc
Confidence 689999999422 23443 3445689999999876542 122334444444332 246899999999
Q ss_pred CCCC
Q 007263 215 LMDK 218 (610)
Q Consensus 215 ~~~~ 218 (610)
+.+.
T Consensus 183 lv~~ 186 (460)
T PTZ00327 183 LVKE 186 (460)
T ss_pred ccCH
Confidence 9853
No 260
>PTZ00416 elongation factor 2; Provisional
Probab=98.55 E-value=2.7e-07 Score=107.57 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=48.2
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCC
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLM 216 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~ 216 (610)
.++|+||||..+. ..-+...++.+|++|+|+++.. +...+ ...+++.+...+.|.|+|+||+|+.
T Consensus 93 ~i~liDtPG~~~f-------------~~~~~~al~~~D~ailVvda~~-g~~~~-t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 93 LINLIDSPGHVDF-------------SSEVTAALRVTDGALVVVDCVE-GVCVQ-TETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEEcCCCHHhH-------------HHHHHHHHhcCCeEEEEEECCC-CcCcc-HHHHHHHHHHcCCCEEEEEEChhhh
Confidence 4899999998653 2225677899999999987543 34333 3456677776788999999999986
No 261
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.53 E-value=9.3e-07 Score=79.60 Aligned_cols=156 Identities=14% Similarity=0.227 Sum_probs=95.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
--+|.++|--||||||+++.+.|.+. +.-.+|..
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~g------------------------------------------- 49 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDT---DTISPTLG------------------------------------------- 49 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCc---cccCCccc-------------------------------------------
Confidence 46899999999999999999999862 11111111
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
|--..+.. ....++++|.-|-.. +++..++|.+..|++|+||+.+. ...-++..
T Consensus 50 -------f~Iktl~~-----~~~~L~iwDvGGq~~-------------lr~~W~nYfestdglIwvvDssD-~~r~~e~~ 103 (185)
T KOG0073|consen 50 -------FQIKTLEY-----KGYTLNIWDVGGQKT-------------LRSYWKNYFESTDGLIWVVDSSD-RMRMQECK 103 (185)
T ss_pred -------eeeEEEEe-----cceEEEEEEcCCcch-------------hHHHHHHhhhccCeEEEEEECch-HHHHHHHH
Confidence 11111111 234789999888543 38889999999999999998753 33333433
Q ss_pred HHHH----HhCCCCCceEEEeecccCCCCCC-c-HHHHHcCccc--ccCCCeeEeeeCChhhhhccccHHHHHHHH
Q 007263 194 KISR----EVDPTGERTFGVLTKIDLMDKGT-D-AADILEGKSY--RLKFPWIGVVNRSQADINKNVDMIAARRRE 261 (610)
Q Consensus 194 ~l~~----~~~~~~~rti~VltK~D~~~~~~-~-~~~~l~~~~~--~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e 261 (610)
..++ +-.-.|.+.+++.||.|+...-. + ...++.-... ......+.+...+.+++.++++++.....+
T Consensus 104 ~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 104 QELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 3322 22335799999999999873221 1 1111111111 122234445556666666666666555544
No 262
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.51 E-value=4.1e-07 Score=106.31 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=48.1
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
..++||||||..+. +.+ +...++.+|+.|+||++.. +... ....+++.+...+.++|+++||+|.
T Consensus 98 ~~inliDtPGh~dF------------~~e-~~~al~~~D~ailVvda~~-Gv~~-~t~~~~~~~~~~~~p~i~~iNK~D~ 162 (843)
T PLN00116 98 YLINLIDSPGHVDF------------SSE-VTAALRITDGALVVVDCIE-GVCV-QTETVLRQALGERIRPVLTVNKMDR 162 (843)
T ss_pred eEEEEECCCCHHHH------------HHH-HHHHHhhcCEEEEEEECCC-CCcc-cHHHHHHHHHHCCCCEEEEEECCcc
Confidence 34789999997553 122 4666789999999998653 3332 2344666667778999999999998
Q ss_pred C
Q 007263 216 M 216 (610)
Q Consensus 216 ~ 216 (610)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 7
No 263
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.50 E-value=4.6e-07 Score=88.64 Aligned_cols=129 Identities=22% Similarity=0.271 Sum_probs=78.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 007263 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (610)
Q Consensus 31 ~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (610)
....|++++.|..|+|||||||.++.... -..++ ...|
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~-~~~t~--k~K~--------------------------------------- 170 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKN-IADTS--KSKN--------------------------------------- 170 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhh-hhhhc--CCCC---------------------------------------
Confidence 45778999999999999999999998753 11100 0011
Q ss_pred hhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCC---eEEEEeecCCCcc
Q 007263 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPN---CIILAISPANQDL 187 (610)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d---~iil~v~~a~~d~ 187 (610)
|.+..+... .-...+.+||+||+.....+ ....+.+.++++.|+.+-+ .+.|+++ +...+
T Consensus 171 -----g~Tq~in~f--------~v~~~~~~vDlPG~~~a~y~---~~~~~d~~~~t~~Y~leR~nLv~~FLLvd-~sv~i 233 (320)
T KOG2486|consen 171 -----GKTQAINHF--------HVGKSWYEVDLPGYGRAGYG---FELPADWDKFTKSYLLERENLVRVFLLVD-ASVPI 233 (320)
T ss_pred -----ccceeeeee--------eccceEEEEecCCcccccCC---ccCcchHhHhHHHHHHhhhhhheeeeeee-ccCCC
Confidence 222211110 01236899999996654322 3345566788889965433 2334443 33333
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 188 ATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 188 ~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
...+.. .+..+...+.|..+|+||+|.....
T Consensus 234 ~~~D~~-~i~~~ge~~VP~t~vfTK~DK~k~~ 264 (320)
T KOG2486|consen 234 QPTDNP-EIAWLGENNVPMTSVFTKCDKQKKV 264 (320)
T ss_pred CCCChH-HHHHHhhcCCCeEEeeehhhhhhhc
Confidence 333322 4445566789999999999998643
No 264
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.45 E-value=3.2e-07 Score=82.22 Aligned_cols=108 Identities=18% Similarity=0.258 Sum_probs=68.1
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HHHH-HHHHhC-CCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIK-ISREVD-PTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~l~-l~~~~~-~~~~rti~Vlt 211 (610)
..|.|+||.|..+. ++++++|.+++-.++++.+..|...... ..++ -+..+. |...-...|-+
T Consensus 58 iklqlwdtagqerf-------------rsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGh 124 (213)
T KOG0091|consen 58 IKLQLWDTAGQERF-------------RSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGH 124 (213)
T ss_pred EEEEEeeccchHHH-------------HHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEecc
Confidence 46899999997553 8889999999999999988776432111 1111 122233 54445557889
Q ss_pred cccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHH
Q 007263 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
|.|+.....-..+-.+......++-|+..+.+++.+++.-.+++.
T Consensus 125 KsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mla 169 (213)
T KOG0091|consen 125 KSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLA 169 (213)
T ss_pred ccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHH
Confidence 999985443222222223455667788888888776665555443
No 265
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.45 E-value=1.4e-06 Score=88.80 Aligned_cols=82 Identities=22% Similarity=0.396 Sum_probs=56.9
Q ss_pred CCcEEEeCCCCCccccCCC-CCchHHHHHHHHHHHhc--------------CCCeEEEEeecCCCccccHHHHHHHHHhC
Q 007263 136 VNLTLIDLPGLTKVAVEGQ-PDSIVQDIENMVRSYIE--------------KPNCIILAISPANQDLATSDAIKISREVD 200 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q-~~~~~~~i~~~~~~yi~--------------~~d~iil~v~~a~~d~~~~~~l~l~~~~~ 200 (610)
.+|++|||||+.+.-.... -+-+...+++.-..|+. +.+++++.+.|....+... .+...+.+.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~-DIe~Mk~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPL-DIEAMKRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHH-HHHHHHHHh
Confidence 3799999999987654321 12255566676777754 3568888888777665444 445667776
Q ss_pred CCCCceEEEeecccCCCCC
Q 007263 201 PTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 201 ~~~~rti~VltK~D~~~~~ 219 (610)
. ..+.|=||.|.|.+...
T Consensus 161 ~-~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 161 K-RVNLIPVIAKADTLTDD 178 (373)
T ss_pred c-ccCeeeeeeccccCCHH
Confidence 5 48999999999998654
No 266
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.44 E-value=4.5e-07 Score=98.38 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=44.5
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-----cHHHHHHHHHhCCCCC-ceE
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-----TSDAIKISREVDPTGE-RTF 207 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-----~~~~l~l~~~~~~~~~-rti 207 (610)
....++||||||..+. +.+ +..++..+|+.||||++....+. .....+.+..+...|. +.|
T Consensus 83 ~~~~i~liDtPGh~df------------~~~-~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iI 149 (447)
T PLN00043 83 TKYYCTVIDAPGHRDF------------IKN-MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149 (447)
T ss_pred CCEEEEEEECCCHHHH------------HHH-HHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEE
Confidence 3456999999996442 233 45667899999999987652221 0122223333334466 568
Q ss_pred EEeecccCC
Q 007263 208 GVLTKIDLM 216 (610)
Q Consensus 208 ~VltK~D~~ 216 (610)
+++||+|+.
T Consensus 150 V~vNKmD~~ 158 (447)
T PLN00043 150 CCCNKMDAT 158 (447)
T ss_pred EEEEcccCC
Confidence 899999976
No 267
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.43 E-value=2.7e-07 Score=82.47 Aligned_cols=117 Identities=22% Similarity=0.203 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
-.-.|.+||+.++||||||-+++.-.|=|-. |+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~-------~~---------------------------------------- 42 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLH-------PT---------------------------------------- 42 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccC-------Cc----------------------------------------
Confidence 4568999999999999999999876551111 11
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+.++....-.+.|.+ ....|.|+||.|.-+. +.++-+|.+.+..||+|.+....|....-
T Consensus 43 -----tIGvDFkvk~m~vdg-~~~KlaiWDTAGqErF-------------RtLTpSyyRgaqGiIlVYDVT~Rdtf~kL- 102 (209)
T KOG0080|consen 43 -----TIGVDFKVKVMQVDG-KRLKLAIWDTAGQERF-------------RTLTPSYYRGAQGIILVYDVTSRDTFVKL- 102 (209)
T ss_pred -----eeeeeEEEEEEEEcC-ceEEEEEEeccchHhh-------------hccCHhHhccCceeEEEEEccchhhHHhH-
Confidence 111111111222222 2346899999997664 78899999999999999987665432221
Q ss_pred HHHHHHhCCC----CCceEEEeecccCC
Q 007263 193 IKISREVDPT----GERTFGVLTKIDLM 216 (610)
Q Consensus 193 l~l~~~~~~~----~~rti~VltK~D~~ 216 (610)
-.++++++-. ..-.++|-||+|.-
T Consensus 103 d~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 103 DIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred HHHHHHHHhhcCCccHhHhhhcccccch
Confidence 2356666632 34457899999965
No 268
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=9.6e-07 Score=81.20 Aligned_cols=120 Identities=21% Similarity=0.296 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
-+-.++++|+.++|||.||-.++...|-|.-. +++-+ +|
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd-------~TiGv--------ef-------------------------- 43 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-------LTIGV--------EF-------------------------- 43 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc-------ceeee--------ee--------------------------
Confidence 45678999999999999999999998844322 11110 00
Q ss_pred hhcC-CCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH-
Q 007263 113 RETG-RTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS- 190 (610)
Q Consensus 113 ~~~g-~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~- 190 (610)
| +...+...+ ..|.++||.|.-.. ++++++|.+.+--.|||.+-.+.+..+.
T Consensus 44 ---g~r~~~id~k~----------IKlqiwDtaGqe~f-------------rsv~~syYr~a~GalLVydit~r~sF~hL 97 (216)
T KOG0098|consen 44 ---GARMVTIDGKQ----------IKLQIWDTAGQESF-------------RSVTRSYYRGAAGALLVYDITRRESFNHL 97 (216)
T ss_pred ---ceeEEEEcCce----------EEEEEEecCCcHHH-------------HHHHHHHhccCcceEEEEEccchhhHHHH
Confidence 1 001111222 24789999997553 8889999999999999998776554333
Q ss_pred -HHHHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 191 -DAIKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 191 -~~l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
..+.=+++....+.-++++-||+|+....
T Consensus 98 ~~wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 98 TSWLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred HHHHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 23333455544567788889999997654
No 269
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.43 E-value=5.3e-06 Score=85.67 Aligned_cols=101 Identities=13% Similarity=0.148 Sum_probs=56.0
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH-HHHHhCCCCCceEEEeec
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK-ISREVDPTGERTFGVLTK 212 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~-l~~~~~~~~~rti~VltK 212 (610)
...++.||||||+.... ...+..+|+++++..+... +.++ ....+ .+.+.++|+||
T Consensus 125 ~g~D~viidT~G~~~~e----------------~~i~~~aD~i~vv~~~~~~-----~el~~~~~~l--~~~~~ivv~NK 181 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE----------------VDIANMADTFVVVTIPGTG-----DDLQGIKAGL--MEIADIYVVNK 181 (300)
T ss_pred CCCCEEEEeCCCCchhh----------------hHHHHhhceEEEEecCCcc-----HHHHHHHHHH--hhhccEEEEEc
Confidence 35689999999975321 1235668888877654421 2222 11212 24667999999
Q ss_pred ccCCCCCCcH--HHH----Hc---CcccccCCCeeEeeeCChhhhhccccHHHH
Q 007263 213 IDLMDKGTDA--ADI----LE---GKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 213 ~D~~~~~~~~--~~~----l~---~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
+|+....... ... +. .........++.+++.+..+++.+...+..
T Consensus 182 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~ 235 (300)
T TIGR00750 182 ADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEE 235 (300)
T ss_pred ccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHH
Confidence 9997543210 000 01 100111224677888777777766665544
No 270
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.43 E-value=6.9e-07 Score=83.08 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=23.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPR 62 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~ 62 (610)
..|+++|.+|+|||||+|+|.|....++
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~ 130 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKV 130 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceee
Confidence 3688999999999999999999765333
No 271
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.40 E-value=8.1e-07 Score=83.77 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcc
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPR 62 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~ 62 (610)
..+++|+|.+|+|||||+|+|+|....++
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~ 145 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNV 145 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccccee
Confidence 45899999999999999999999875444
No 272
>PRK12740 elongation factor G; Reviewed
Probab=98.39 E-value=6.8e-07 Score=102.59 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=50.2
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
...++||||||..+. ...+..++..+|++|+++++... . ......+++.+...+.|.++|+||+|
T Consensus 59 ~~~i~liDtPG~~~~-------------~~~~~~~l~~aD~vllvvd~~~~-~-~~~~~~~~~~~~~~~~p~iiv~NK~D 123 (668)
T PRK12740 59 GHKINLIDTPGHVDF-------------TGEVERALRVLDGAVVVVCAVGG-V-EPQTETVWRQAEKYGVPRIIFVNKMD 123 (668)
T ss_pred CEEEEEEECCCcHHH-------------HHHHHHHHHHhCeEEEEEeCCCC-c-CHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 457999999997542 33467788899999999987653 2 23334455555556899999999999
Q ss_pred CCCC
Q 007263 215 LMDK 218 (610)
Q Consensus 215 ~~~~ 218 (610)
....
T Consensus 124 ~~~~ 127 (668)
T PRK12740 124 RAGA 127 (668)
T ss_pred CCCC
Confidence 8743
No 273
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.38 E-value=5e-07 Score=98.06 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=43.1
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc--------cccHHHHHHHHHhCCCCCc
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--------LATSDAIKISREVDPTGER 205 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d--------~~~~~~l~l~~~~~~~~~r 205 (610)
+...++||||||..+ .+.+ +...+..+|.+||||++...- ..+.+.+.++ ...|.+
T Consensus 83 ~~~~i~lIDtPGh~~------------f~~~-~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~---~~~gi~ 146 (446)
T PTZ00141 83 PKYYFTIIDAPGHRD------------FIKN-MITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA---FTLGVK 146 (446)
T ss_pred CCeEEEEEECCChHH------------HHHH-HHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH---HHcCCC
Confidence 445799999999543 2233 344467999999999865432 2233444444 444655
Q ss_pred -eEEEeecccC
Q 007263 206 -TFGVLTKIDL 215 (610)
Q Consensus 206 -ti~VltK~D~ 215 (610)
.|+++||+|.
T Consensus 147 ~iiv~vNKmD~ 157 (446)
T PTZ00141 147 QMIVCINKMDD 157 (446)
T ss_pred eEEEEEEcccc
Confidence 6799999994
No 274
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=2.1e-06 Score=88.33 Aligned_cols=83 Identities=27% Similarity=0.468 Sum_probs=56.4
Q ss_pred CCcEEEeCCCCCccccCCC-CCchHHHHHHHHHHHhc-------------CCCeEEEEeecCCCccccHHHHHHHHHhCC
Q 007263 136 VNLTLIDLPGLTKVAVEGQ-PDSIVQDIENMVRSYIE-------------KPNCIILAISPANQDLATSDAIKISREVDP 201 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q-~~~~~~~i~~~~~~yi~-------------~~d~iil~v~~a~~d~~~~~~l~l~~~~~~ 201 (610)
.+||+|||||+.+.-.... -+-+...+.+.-..|+. +.+|.++.+.|....+..-+ ..+.+.+..
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D-i~~Mk~l~~ 157 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD-IEFMKKLSK 157 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh-HHHHHHHhc
Confidence 3699999999987544321 12255566666667754 45688888888776554443 345555544
Q ss_pred CCCceEEEeecccCCCCCC
Q 007263 202 TGERTFGVLTKIDLMDKGT 220 (610)
Q Consensus 202 ~~~rti~VltK~D~~~~~~ 220 (610)
..++|-|+.|.|.+.+++
T Consensus 158 -~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 158 -KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred -cccccceeeccccCCHHH
Confidence 589999999999986653
No 275
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.36 E-value=1e-06 Score=84.62 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
.++++||.+|+|||||+|+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999998764
No 276
>PRK13768 GTPase; Provisional
Probab=98.36 E-value=2.7e-06 Score=85.56 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=43.2
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcC--CCeEEEEeecCCC----ccccHHHHHHHHHhCCCCCceEEE
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK--PNCIILAISPANQ----DLATSDAIKISREVDPTGERTFGV 209 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~--~d~iil~v~~a~~----d~~~~~~l~l~~~~~~~~~rti~V 209 (610)
.++.++||||....... ......+ .+++.. +++++++++.... +......+.+.... ..+.+.+.|
T Consensus 97 ~~~~~~d~~g~~~~~~~------~~~~~~~-~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v 168 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF------RESGRKL-VERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPV 168 (253)
T ss_pred CCEEEEeCCcHHHHHhh------hHHHHHH-HHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEE
Confidence 47999999998664221 1111222 233333 8888888876431 11111111112222 347999999
Q ss_pred eecccCCCCC
Q 007263 210 LTKIDLMDKG 219 (610)
Q Consensus 210 ltK~D~~~~~ 219 (610)
+||+|+.+..
T Consensus 169 ~nK~D~~~~~ 178 (253)
T PRK13768 169 LNKADLLSEE 178 (253)
T ss_pred EEhHhhcCch
Confidence 9999998664
No 277
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.35 E-value=9.8e-07 Score=81.02 Aligned_cols=120 Identities=16% Similarity=0.268 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
..|-.|++.|+.|+|||||+|.++..+|.- .
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~-----------------------q-------------------------- 37 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQ-----------------------Q-------------------------- 37 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHH-----------------------H--------------------------
Confidence 367899999999999999999999887610 0
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC-ccccH
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATS 190 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~-d~~~~ 190 (610)
...-.+..|-.+.+.+ . .....|.|+||.|--+. +++-..+.+.+|+.+|+.+..+. .+.+-
T Consensus 38 -ykaTIgadFltKev~V--d-~~~vtlQiWDTAGQERF-------------qsLg~aFYRgaDcCvlvydv~~~~Sfe~L 100 (210)
T KOG0394|consen 38 -YKATIGADFLTKEVQV--D-DRSVTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVNNPKSFENL 100 (210)
T ss_pred -hccccchhheeeEEEE--c-CeEEEEEEEecccHHHh-------------hhcccceecCCceEEEEeecCChhhhccH
Confidence 0001122233333333 2 23346899999997665 44456788999999998654332 12222
Q ss_pred HH--HHHHHHhC---CCCCceEEEeecccCCC
Q 007263 191 DA--IKISREVD---PTGERTFGVLTKIDLMD 217 (610)
Q Consensus 191 ~~--l~l~~~~~---~~~~rti~VltK~D~~~ 217 (610)
+. -+++...+ |..=|.|++-||+|.-.
T Consensus 101 ~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 101 ENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred HHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 22 13555554 56689999999999865
No 278
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.35 E-value=7.6e-07 Score=82.60 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccc
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~ 64 (610)
.-++|+++|.+|+||||++|+|+|...++.+.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~ 130 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGN 130 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccC
Confidence 56889999999999999999999976545443
No 279
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.33 E-value=6.2e-06 Score=87.95 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=49.9
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
.++.||||||.... .+.....+..+. ...+++.++||+++.. -+++...++.+......+-+|+||.|.
T Consensus 183 ~DvViIDTaGr~~~-----d~~lm~El~~i~--~~~~p~e~lLVlda~~----Gq~a~~~a~~F~~~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 183 FDIIIVDTSGRHKQ-----EDSLFEEMLQVA--EAIQPDNIIFVMDGSI----GQAAEAQAKAFKDSVDVGSVIITKLDG 251 (429)
T ss_pred CCEEEEECCCCCcc-----hHHHHHHHHHHh--hhcCCcEEEEEecccc----ChhHHHHHHHHHhccCCcEEEEECccC
Confidence 58999999996542 111222232222 2346788888887643 244555666665545678899999998
Q ss_pred CCCCCcHHHH
Q 007263 216 MDKGTDAADI 225 (610)
Q Consensus 216 ~~~~~~~~~~ 225 (610)
...+..+..+
T Consensus 252 ~argG~aLs~ 261 (429)
T TIGR01425 252 HAKGGGALSA 261 (429)
T ss_pred CCCccHHhhh
Confidence 8766555544
No 280
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=4.9e-06 Score=88.91 Aligned_cols=155 Identities=19% Similarity=0.279 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
.+-|-|+|+|.--.||||||-+|=+..+-+...|--|
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGIT------------------------------------------- 39 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGIT------------------------------------------- 39 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCcee-------------------------------------------
Confidence 3679999999999999999999987766333332211
Q ss_pred hhhcCCCCccccccEEEEEecC--CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC-ccc
Q 007263 112 DRETGRTKQISSVPIHLSIYSP--NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLA 188 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~--~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~-d~~ 188 (610)
.+.=-..+..+ ..+.++|+||||--.. ..|=.+=.+-+|.+||+|..... -..
T Consensus 40 -----------QhIGA~~v~~~~~~~~~itFiDTPGHeAF-------------t~mRaRGa~vtDIaILVVa~dDGv~pQ 95 (509)
T COG0532 40 -----------QHIGAYQVPLDVIKIPGITFIDTPGHEAF-------------TAMRARGASVTDIAILVVAADDGVMPQ 95 (509)
T ss_pred -----------eEeeeEEEEeccCCCceEEEEcCCcHHHH-------------HHHHhcCCccccEEEEEEEccCCcchh
Confidence 11111223322 4578999999996443 22222224568889998864321 233
Q ss_pred cHHHHHHHHHhCCCCCceEEEeecccCCCCCCcH--HHHHc-Cc---ccccCCCeeEeeeCChhhhhccccHHH
Q 007263 189 TSDAIKISREVDPTGERTFGVLTKIDLMDKGTDA--ADILE-GK---SYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 189 ~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~--~~~l~-~~---~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
+-++.+.++. .+.|+++.+||+|+.+..-+. .+..+ |. .+.-...++++++.+..+++++...+.
T Consensus 96 TiEAI~hak~---a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 96 TIEAINHAKA---AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred HHHHHHHHHH---CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence 4456656654 479999999999998443221 11111 11 111112455666666677776666544
No 281
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.26 E-value=1.6e-06 Score=79.09 Aligned_cols=25 Identities=40% Similarity=0.626 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
..++++|.+|+|||||+|+|+|..+
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3899999999999999999999865
No 282
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.24 E-value=3.1e-06 Score=83.52 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC-CCCccccc
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK-DFLPRGSG 65 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~-~~lP~~~~ 65 (610)
..-.|+|+|.+++|||+|+|.|+|. +.|+.+.+
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~ 39 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDT 39 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCC
Confidence 4567999999999999999999998 23466654
No 283
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=5.9e-06 Score=85.53 Aligned_cols=69 Identities=20% Similarity=0.379 Sum_probs=46.6
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc--------cccHHHHHHHHHhCCCCCc
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--------LATSDAIKISREVDPTGER 205 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d--------~~~~~~l~l~~~~~~~~~r 205 (610)
+...+||+|+||..+ .+.+|+.. +.++|+.||||++.... ..+.+..-+++.+. -..
T Consensus 83 ~k~~~tIiDaPGHrd------------FvknmItG-asqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~ 147 (428)
T COG5256 83 DKYNFTIIDAPGHRD------------FVKNMITG-ASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQ 147 (428)
T ss_pred CCceEEEeeCCchHH------------HHHHhhcc-hhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--Cce
Confidence 345799999999322 23343322 46799999999865442 23345555676664 378
Q ss_pred eEEEeecccCCC
Q 007263 206 TFGVLTKIDLMD 217 (610)
Q Consensus 206 ti~VltK~D~~~ 217 (610)
.|+++||+|.++
T Consensus 148 lIVavNKMD~v~ 159 (428)
T COG5256 148 LIVAVNKMDLVS 159 (428)
T ss_pred EEEEEEcccccc
Confidence 999999999985
No 284
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.21 E-value=9.6e-06 Score=77.58 Aligned_cols=79 Identities=23% Similarity=0.401 Sum_probs=47.9
Q ss_pred CcEEEeCCCCCccccCCC-CCchHHHHHHHHHHHhc--------------CCCeEEEEeecCCCccccHHHHHHHHHhCC
Q 007263 137 NLTLIDLPGLTKVAVEGQ-PDSIVQDIENMVRSYIE--------------KPNCIILAISPANQDLATSDAIKISREVDP 201 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q-~~~~~~~i~~~~~~yi~--------------~~d~iil~v~~a~~d~~~~~~l~l~~~~~~ 201 (610)
+|++|||||+.+.-..+. =+-+...|.+.-.+|++ +.+|+++.+.|....+..-+ ..+++.+..
T Consensus 105 kltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplD-ieflkrLt~ 183 (336)
T KOG1547|consen 105 KLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLD-IEFLKRLTE 183 (336)
T ss_pred EEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCccc-HHHHHHHhh
Confidence 699999999976433211 12255555555555654 34677777777655443322 223443332
Q ss_pred CCCceEEEeecccCCC
Q 007263 202 TGERTFGVLTKIDLMD 217 (610)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (610)
-.++|-|+-|.|.+.
T Consensus 184 -vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 184 -VVNVVPVIAKADTLT 198 (336)
T ss_pred -hheeeeeEeeccccc
Confidence 367899999999864
No 285
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=5.8e-06 Score=76.48 Aligned_cols=151 Identities=18% Similarity=0.262 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.--+|+++|--+|||||+|..|---. ++|..|
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E-------~vttvP----------------------------------------- 47 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGE-------IVTTVP----------------------------------------- 47 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCC-------cccCCC-----------------------------------------
Confidence 34589999999999999999885443 333355
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+.+|.-..+.+ ....++++|.-|-.+. +.+.+.|..+.+.+|+|||++..+.-....
T Consensus 48 -----TiGfnVE~v~y-----kn~~f~vWDvGGq~k~-------------R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak 104 (181)
T KOG0070|consen 48 -----TIGFNVETVEY-----KNISFTVWDVGGQEKL-------------RPLWKHYFQNTQGLIFVVDSSDRERIEEAK 104 (181)
T ss_pred -----ccccceeEEEE-----cceEEEEEecCCCccc-------------ccchhhhccCCcEEEEEEeCCcHHHHHHHH
Confidence 22233333332 2457899999997553 677999999999999999876543222212
Q ss_pred HHHHHHh---CCCCCceEEEeecccCCCCCC--cHHHHHcCcccccCCCeeE--eeeCChhhhhccccHH
Q 007263 193 IKISREV---DPTGERTFGVLTKIDLMDKGT--DAADILEGKSYRLKFPWIG--VVNRSQADINKNVDMI 255 (610)
Q Consensus 193 l~l~~~~---~~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~--v~~~s~~~~~~~~~~~ 255 (610)
-.+.+.+ +..+.++++..||-|+-..-+ +..+.+.-....- ..|+. ..+.+.+++.++.+.+
T Consensus 105 ~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~-~~w~iq~~~a~~G~GL~egl~wl 173 (181)
T KOG0070|consen 105 EELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS-RNWHIQSTCAISGEGLYEGLDWL 173 (181)
T ss_pred HHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC-CCcEEeeccccccccHHHHHHHH
Confidence 2233333 335789999999999865433 2223322222222 44543 2344555554444433
No 286
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=1.1e-05 Score=85.79 Aligned_cols=143 Identities=17% Similarity=0.279 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
.+-|-|-|+|.--.||||||.+|-+..+-.+..|
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~G---------------------------------------------- 184 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAG---------------------------------------------- 184 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcC----------------------------------------------
Confidence 4678999999999999999999988765222111
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~ 191 (610)
| ++.+.=-..+.-|....+||.||||--.. ..|-.+=..-.|.++|||. +. |.....
T Consensus 185 ----G----ITQhIGAF~V~~p~G~~iTFLDTPGHaAF-------------~aMRaRGA~vtDIvVLVVA-ad-DGVmpQ 241 (683)
T KOG1145|consen 185 ----G----ITQHIGAFTVTLPSGKSITFLDTPGHAAF-------------SAMRARGANVTDIVVLVVA-AD-DGVMPQ 241 (683)
T ss_pred ----C----ccceeceEEEecCCCCEEEEecCCcHHHH-------------HHHHhccCccccEEEEEEE-cc-CCccHh
Confidence 2 22222223345556678999999996443 3333334556787777763 33 322333
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCCcHHH----HHcCcccccCC-CeeEeeeCCh
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGTDAAD----ILEGKSYRLKF-PWIGVVNRSQ 245 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~----~l~~~~~~l~~-g~~~v~~~s~ 245 (610)
.++-.+-+...+.|+|+.+||+|.- +.+..+ ++..-.....+ |-+.+.+.|+
T Consensus 242 T~EaIkhAk~A~VpiVvAinKiDkp--~a~pekv~~eL~~~gi~~E~~GGdVQvipiSA 298 (683)
T KOG1145|consen 242 TLEAIKHAKSANVPIVVAINKIDKP--GANPEKVKRELLSQGIVVEDLGGDVQVIPISA 298 (683)
T ss_pred HHHHHHHHHhcCCCEEEEEeccCCC--CCCHHHHHHHHHHcCccHHHcCCceeEEEeec
Confidence 3333333444578999999999954 444333 32222222222 4555666654
No 287
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.19 E-value=6.3e-06 Score=79.39 Aligned_cols=149 Identities=18% Similarity=0.198 Sum_probs=85.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|..|+|||+|.-.+++..|.+.- -|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y------~p------------------------------------------ 34 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDY------DP------------------------------------------ 34 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccccccc------CC------------------------------------------
Confidence 468999999999999999999988762221 11
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
+.. ......+.+. .....|.|+||+|.... ..|-..|+...|..++|.+.++... -..+.
T Consensus 35 ----tie-d~y~k~~~v~-~~~~~l~ilDt~g~~~~-------------~~~~~~~~~~~~gF~lVysitd~~S-F~~~~ 94 (196)
T KOG0395|consen 35 ----TIE-DSYRKELTVD-GEVCMLEILDTAGQEEF-------------SAMRDLYIRNGDGFLLVYSITDRSS-FEEAK 94 (196)
T ss_pred ----Ccc-ccceEEEEEC-CEEEEEEEEcCCCcccC-------------hHHHHHhhccCcEEEEEEECCCHHH-HHHHH
Confidence 000 0011112122 23346789999994332 4566789999999999887554211 11111
Q ss_pred H----HHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhc
Q 007263 194 K----ISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINK 250 (610)
Q Consensus 194 ~----l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (610)
. +.+.-+....|++.|.||+|+........+-.+......+.+|+.++......+++
T Consensus 95 ~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~ 155 (196)
T KOG0395|consen 95 QLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDE 155 (196)
T ss_pred HHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHH
Confidence 1 22222344569999999999976432111111111334445677777655443333
No 288
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.19 E-value=2e-05 Score=70.12 Aligned_cols=70 Identities=20% Similarity=0.355 Sum_probs=50.6
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH-HHHHhCC----CCCceEEEee
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK-ISREVDP----TGERTFGVLT 211 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~-l~~~~~~----~~~rti~Vlt 211 (610)
+|.|.||.|+...+ .++-+.|++-+|+.+|+.++++.. .-+... +-+++|. ...++++..|
T Consensus 61 ~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d~e--Sf~rv~llKk~Idk~KdKKEvpiVVLaN 126 (198)
T KOG3883|consen 61 QLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMDPE--SFQRVELLKKEIDKHKDKKEVPIVVLAN 126 (198)
T ss_pred eEEEeecccccCch------------hhhhHhHhccCceEEEEecCCCHH--HHHHHHHHHHHHhhccccccccEEEEec
Confidence 68999999997642 567889999999999999877532 222222 3344543 3478888999
Q ss_pred cccCCCCCC
Q 007263 212 KIDLMDKGT 220 (610)
Q Consensus 212 K~D~~~~~~ 220 (610)
|.|+..+.+
T Consensus 127 ~rdr~~p~~ 135 (198)
T KOG3883|consen 127 KRDRAEPRE 135 (198)
T ss_pred hhhcccchh
Confidence 999976654
No 289
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=1.1e-05 Score=84.20 Aligned_cols=151 Identities=20% Similarity=0.262 Sum_probs=83.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCC-------CccceeeccCCCcccCChHHHHHHH
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEG-------SREYAEFLHIPRKRFTDFAAVRKEI 107 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~i 107 (610)
..|++||..|+||||++..|.+. +...|. .+-+..++.. ...|++....+-....+..++.+.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~~Gk--------kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL 312 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHGKKK--------TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL 312 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHHcCC--------cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHH
Confidence 57899999999999999999864 211110 0111222211 1122222222222223444444433
Q ss_pred HHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHh--cCCCeEEEEeecCCC
Q 007263 108 QDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQ 185 (610)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~d~iil~v~~a~~ 185 (610)
...... ...++.||||||-... ....+.++ ..++ ..++.++||++++.
T Consensus 313 ~~lk~~--------------------~~~DvVLIDTaGRs~k--------d~~lm~EL-~~~lk~~~PdevlLVLsATt- 362 (436)
T PRK11889 313 TYFKEE--------------------ARVDYILIDTAGKNYR--------ASETVEEM-IETMGQVEPDYICLTLSASM- 362 (436)
T ss_pred HHHHhc--------------------cCCCEEEEeCccccCc--------CHHHHHHH-HHHHhhcCCCeEEEEECCcc-
Confidence 221110 1247999999998552 12233333 2222 34677778876532
Q ss_pred ccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHc
Q 007263 186 DLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILE 227 (610)
Q Consensus 186 d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (610)
...+....++.+... ...=+|+||.|.......+.+++.
T Consensus 363 --k~~d~~~i~~~F~~~-~idglI~TKLDET~k~G~iLni~~ 401 (436)
T PRK11889 363 --KSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPA 401 (436)
T ss_pred --ChHHHHHHHHHhcCC-CCCEEEEEcccCCCCccHHHHHHH
Confidence 234556677777663 456788999999887766666654
No 290
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=6.5e-06 Score=92.90 Aligned_cols=135 Identities=18% Similarity=0.243 Sum_probs=88.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
....|.++|.-.+|||||.++|+=.. |..++ +-++. .+..+.|+.+.. .
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k-~G~v~-----------------~g~~~~D~~e~E------q- 57 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISK-IGEVH-----------------DGAATMDWMEQE------Q- 57 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCC-Ccccc-----------------CCCccCCCcHHH------H-
Confidence 56789999999999999999998432 33332 11111 011223333221 1
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
..+-.+....+.+...+ ...++||||||..+.. .-+.+.++-.|..|+|+++.. +. ....
T Consensus 58 ---eRGITI~saa~s~~~~~--~~~iNlIDTPGHVDFt-------------~EV~rslrvlDgavvVvdave-GV-~~QT 117 (697)
T COG0480 58 ---ERGITITSAATTLFWKG--DYRINLIDTPGHVDFT-------------IEVERSLRVLDGAVVVVDAVE-GV-EPQT 117 (697)
T ss_pred ---hcCCEEeeeeeEEEEcC--ceEEEEeCCCCccccH-------------HHHHHHHHhhcceEEEEECCC-Ce-eecH
Confidence 22334555555554433 3569999999998863 337778888999988887543 33 3345
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+.++++..+.|.++++||+|.+..
T Consensus 118 Etv~rqa~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 118 ETVWRQADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred HHHHHHHhhcCCCeEEEEECcccccc
Confidence 55778888889999999999998854
No 291
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.15 E-value=2.5e-06 Score=88.70 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=27.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccccccccccc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p 71 (610)
-++.|||-+|+||||+||+|+|... ..++++|
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~-----~~~s~~P 164 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV-----AKTSNRP 164 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc-----eeeCCCC
Confidence 4699999999999999999999986 5666777
No 292
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.14 E-value=6.9e-06 Score=83.77 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcc
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPR 62 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~ 62 (610)
...+++|||.+|+|||||+|+|+|....++
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~ 146 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV 146 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc
Confidence 345799999999999999999999765333
No 293
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=1.2e-05 Score=75.73 Aligned_cols=119 Identities=16% Similarity=0.255 Sum_probs=78.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
.-+-.||++|++++|||-||..++.-.| .+-++-++-+.+.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF-----~~~SksTIGvef~t--------------------------------- 53 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEF-----SLESKSTIGVEFAT--------------------------------- 53 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhccccc-----CcccccceeEEEEe---------------------------------
Confidence 3567899999999999999999998777 33333332222111
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~ 191 (610)
.. +.|.+ ......|+||.|.-+. +.++..|.+.+...+|+.+-.....- .-
T Consensus 54 ------------~t--~~vd~-k~vkaqIWDTAGQERy-------------rAitSaYYrgAvGAllVYDITr~~Tf-en 104 (222)
T KOG0087|consen 54 ------------RT--VNVDG-KTVKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDITRRQTF-EN 104 (222)
T ss_pred ------------ec--eeecC-cEEEEeeecccchhhh-------------ccccchhhcccceeEEEEechhHHHH-HH
Confidence 00 11111 1235679999998775 66788999999999999986543211 12
Q ss_pred HHHHHHHh---CCCCCceEEEeecccCCC
Q 007263 192 AIKISREV---DPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 192 ~l~l~~~~---~~~~~rti~VltK~D~~~ 217 (610)
..++++++ .....++++|-||+|+..
T Consensus 105 v~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 105 VERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred HHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 22344444 334688899999999975
No 294
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.09 E-value=7.9e-06 Score=77.13 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
..+.++++|.+|+|||||+|+|.+..+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~ 140 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 346899999999999999999999775
No 295
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.07 E-value=1e-05 Score=82.95 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
-.+++|||.+|+||||++|+|.|...
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~ 146 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKI 146 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc
Confidence 45899999999999999999999875
No 296
>PTZ00099 rab6; Provisional
Probab=98.07 E-value=7.7e-06 Score=77.56 Aligned_cols=116 Identities=18% Similarity=0.135 Sum_probs=72.3
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-cccH-HHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-DAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~~~~-~~l~l~~~~~~~~~rti~VltK~ 213 (610)
.++.|+||||..+. ..+...|++.+|++|+|++..+.+ +... ..+..+......+.++++|.||+
T Consensus 29 v~l~iwDt~G~e~~-------------~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQERF-------------RSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKT 95 (176)
T ss_pred EEEEEEECCChHHh-------------hhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECc
Confidence 57899999997653 456778999999999999876532 1111 12222222233357889999999
Q ss_pred cCCCCCC-cHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHHHHHhHh
Q 007263 214 DLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREYF 265 (610)
Q Consensus 214 D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f 265 (610)
|+..... ...+. .......+..|+.+++.+..+++..+..+.....+.+.+
T Consensus 96 DL~~~~~v~~~e~-~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 96 DLGDLRKVTYEEG-MQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred ccccccCCCHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 9864321 11111 111222344577888888888888877776666654433
No 297
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.07 E-value=2.7e-06 Score=84.51 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.8
Q ss_pred EEcCCCCCHHHHHhhhhCC
Q 007263 39 VVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 39 VvG~~ssGKSSllnal~G~ 57 (610)
|+|++||||||+..++...
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 7999999999999999864
No 298
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.04 E-value=2.2e-05 Score=77.30 Aligned_cols=120 Identities=22% Similarity=0.324 Sum_probs=71.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc--ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
+|+++|..+|||||..+.+.+. ..|.++. -+|..+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~-~~p~dT~~L~~T~~v------------------------------------------ 37 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHK-YSPRDTLRLEPTIDV------------------------------------------ 37 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SE------------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcC-CCchhccccCCcCCc------------------------------------------
Confidence 5899999999999999999986 3455532 111111
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc----
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT---- 189 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~---- 189 (610)
. .-.+...+...+.+||.||....-... ....-....++..++|+|+++.+.++..
T Consensus 38 --------e----~~~v~~~~~~~l~iwD~pGq~~~~~~~--------~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~ 97 (232)
T PF04670_consen 38 --------E----KSHVRFLSFLPLNIWDCPGQDDFMENY--------FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAY 97 (232)
T ss_dssp --------E----EEEEECTTSCEEEEEEE-SSCSTTHTT--------HTCCHHHHHCTESEEEEEEETT-STCHHHHHH
T ss_pred --------e----EEEEecCCCcEEEEEEcCCcccccccc--------ccccHHHHHhccCEEEEEEEcccccHHHHHHH
Confidence 0 011222344578999999986542210 0011234468899999999877555322
Q ss_pred -HHHHHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 190 -SDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 190 -~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
...++.+.+..| +.++.+.+.|+|++.++
T Consensus 98 ~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 98 LSDCIEALRQYSP-NIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHHHHHHHHHHST-T-EEEEEEE-CCCS-HH
T ss_pred HHHHHHHHHHhCC-CCeEEEEEeecccCCHH
Confidence 233345667777 68999999999998543
No 299
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.03 E-value=2e-05 Score=78.88 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
..++++|.+|+|||||||+|+|...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 4799999999999999999999754
No 300
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.02 E-value=2e-05 Score=84.48 Aligned_cols=120 Identities=20% Similarity=0.265 Sum_probs=77.2
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
-=+||+||+.|+|||||+=+|++..| |- .++-|.|-...
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef-~~--~VP~rl~~i~I-------------------------------------- 47 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEF-VD--AVPRRLPRILI-------------------------------------- 47 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhc-cc--cccccCCcccc--------------------------------------
Confidence 34899999999999999999999876 22 22233330000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeec---CCCccccH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP---ANQDLATS 190 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~---a~~d~~~~ 190 (610)
. . =..|+..+.++|||+--.+ . +..+.+-++++|+|.++... ...|..+.
T Consensus 48 -P---a----------dvtPe~vpt~ivD~ss~~~---~----------~~~l~~EirkA~vi~lvyavd~~~T~D~ist 100 (625)
T KOG1707|consen 48 -P---A----------DVTPENVPTSIVDTSSDSD---D----------RLCLRKEIRKADVICLVYAVDDESTVDRIST 100 (625)
T ss_pred -C---C----------ccCcCcCceEEEecccccc---h----------hHHHHHHHhhcCEEEEEEecCChHHhhhhhh
Confidence 0 0 0133445689999983211 0 45567778999988777632 22344445
Q ss_pred HHHHHHHHhC--CCCCceEEEeecccCCCCCCc
Q 007263 191 DAIKISREVD--PTGERTFGVLTKIDLMDKGTD 221 (610)
Q Consensus 191 ~~l~l~~~~~--~~~~rti~VltK~D~~~~~~~ 221 (610)
-++-+.+..- ....|+|+|-||.|..+..+.
T Consensus 101 ~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 101 KWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred hhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 5555666554 245899999999999876543
No 301
>PRK12289 GTPase RsgA; Reviewed
Probab=98.02 E-value=1e-05 Score=84.78 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFL 60 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~l 60 (610)
.++|+|.+|+|||||||+|+|...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~ 198 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVEL 198 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccc
Confidence 4899999999999999999987543
No 302
>PRK12288 GTPase RsgA; Reviewed
Probab=98.01 E-value=1.5e-05 Score=83.57 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
.++++|.+|+|||||||+|+|...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc
Confidence 489999999999999999999764
No 303
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.00 E-value=2.7e-05 Score=72.43 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
|.++++|..+||||||++.+++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 67899999999999999999875
No 304
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=1e-05 Score=83.21 Aligned_cols=106 Identities=20% Similarity=0.195 Sum_probs=62.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
.++.+||-||+|||||+|||+....-+-..-.||--|.+=. +.+. | ..+. ....+
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Gi-----------v~v~--------d-~rl~-----~L~~~ 57 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGV-----------VYVP--------D-CRLD-----ELAEI 57 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeE-----------EecC--------c-hHHH-----HHHHh
Confidence 57899999999999999999987643344445666662211 0000 0 0000 00111
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecC
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a 183 (610)
.+ .+... + -..+.|||.+|+...++.|. .+ -+-...-|+++|+|+.||...
T Consensus 58 ~~----c~~k~----~----~~~ve~vDIAGLV~GAs~Ge--GL----GNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 58 VK----CPPKI----R----PAPVEFVDIAGLVKGASKGE--GL----GNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cC----CCCcE----E----eeeeEEEEecccCCCcccCC--Cc----chHHHHhhhhcCeEEEEEEec
Confidence 11 00111 1 12588999999998877652 22 233445578999999999754
No 305
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.99 E-value=9.7e-06 Score=78.13 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=43.4
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
.++.||||||..... .+....++++.. .+ .++-++||+++... ++.+..+.........+=+|+||.|.
T Consensus 84 ~D~vlIDT~Gr~~~d-----~~~~~el~~~~~-~~-~~~~~~LVlsa~~~----~~~~~~~~~~~~~~~~~~lIlTKlDe 152 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRD-----EELLEELKKLLE-AL-NPDEVHLVLSATMG----QEDLEQALAFYEAFGIDGLILTKLDE 152 (196)
T ss_dssp SSEEEEEE-SSSSTH-----HHHHHHHHHHHH-HH-SSSEEEEEEEGGGG----GHHHHHHHHHHHHSSTCEEEEESTTS
T ss_pred CCEEEEecCCcchhh-----HHHHHHHHHHhh-hc-CCccceEEEecccC----hHHHHHHHHHhhcccCceEEEEeecC
Confidence 479999999986531 112233333222 22 67778788765432 22222222221112345677999998
Q ss_pred CCCCCcHHHHHc
Q 007263 216 MDKGTDAADILE 227 (610)
Q Consensus 216 ~~~~~~~~~~l~ 227 (610)
......+.+++.
T Consensus 153 t~~~G~~l~~~~ 164 (196)
T PF00448_consen 153 TARLGALLSLAY 164 (196)
T ss_dssp SSTTHHHHHHHH
T ss_pred CCCcccceeHHH
Confidence 877655666544
No 306
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=1.8e-05 Score=89.68 Aligned_cols=171 Identities=18% Similarity=0.256 Sum_probs=89.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCC-------CccceeeccCCCcccCChHHHHHHHH
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEG-------SREYAEFLHIPRKRFTDFAAVRKEIQ 108 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~i~ 108 (610)
.|++||.+|+||||.+..|.+.-. +.... . .+-+...+.. ...|++....+.....+..++.+.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~----k--kV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCV-AREGA----D--QLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHH-HHcCC----C--eEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 578999999999999999998632 22110 0 1111222211 12334444444333345555544432
Q ss_pred HHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc
Q 007263 109 DETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA 188 (610)
Q Consensus 109 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~ 188 (610)
. . ...++.||||||..... ..+.+.+..+.. ...++-++||+++...
T Consensus 260 ~----~-------------------~~~D~VLIDTAGRs~~d-----~~l~eel~~l~~--~~~p~e~~LVLsAt~~--- 306 (767)
T PRK14723 260 A----L-------------------GDKHLVLIDTVGMSQRD-----RNVSEQIAMLCG--VGRPVRRLLLLNAASH--- 306 (767)
T ss_pred H----h-------------------cCCCEEEEeCCCCCccC-----HHHHHHHHHHhc--cCCCCeEEEEECCCCc---
Confidence 1 1 12378999999976531 112222222211 2346667777765431
Q ss_pred cHHHHHHHHHhCCCC--CceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhh
Q 007263 189 TSDAIKISREVDPTG--ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADI 248 (610)
Q Consensus 189 ~~~~l~l~~~~~~~~--~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~ 248 (610)
..+..++++.+.... ..+=+|+||.|.......+.+++.. ..+..-|++.-.+=.+|+
T Consensus 307 ~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~--~~lPI~yit~GQ~VPdDL 366 (767)
T PRK14723 307 GDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIR--HRLPVHYVSTGQKVPEHL 366 (767)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHH--HCCCeEEEecCCCChhhc
Confidence 223333555554321 3566889999998777667776542 233344554443333333
No 307
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=2.2e-05 Score=74.11 Aligned_cols=71 Identities=21% Similarity=0.341 Sum_probs=48.5
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc---CCCeEEEEeecCCCccccHHHHHH----HHHh--CCCCCceE
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE---KPNCIILAISPANQDLATSDAIKI----SREV--DPTGERTF 207 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~---~~d~iil~v~~a~~d~~~~~~l~l----~~~~--~~~~~rti 207 (610)
..+|||.||-.+. +.-..+|++ .+-+|++||+++..+-...+.-.+ +-.. ...+.+++
T Consensus 83 ~~~LVD~PGH~rl-------------R~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vL 149 (238)
T KOG0090|consen 83 NVTLVDLPGHSRL-------------RRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVL 149 (238)
T ss_pred ceEEEeCCCcHHH-------------HHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEE
Confidence 3799999997663 444566666 688999999988654333333332 2222 35578999
Q ss_pred EEeecccCCCCCC
Q 007263 208 GVLTKIDLMDKGT 220 (610)
Q Consensus 208 ~VltK~D~~~~~~ 220 (610)
+..||-|+.-..+
T Consensus 150 IaCNKqDl~tAkt 162 (238)
T KOG0090|consen 150 IACNKQDLFTAKT 162 (238)
T ss_pred EEecchhhhhcCc
Confidence 9999999975543
No 308
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=0.0001 Score=76.85 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=81.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCC-------CccceeeccCCCcccCChHHHHHH
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEG-------SREYAEFLHIPRKRFTDFAAVRKE 106 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~ 106 (610)
-..|+++|++|+||||++..|... +...+. .+.+...+.. ...|++....|-....+..++...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~~g~--------~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~a 276 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLKQNR--------TVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA 276 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHcCC--------eEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHH
Confidence 346789999999999999999864 222221 1122233221 112233222222222455555444
Q ss_pred HHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHh--cCCCeEEEEeecCC
Q 007263 107 IQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPAN 184 (610)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~d~iil~v~~a~ 184 (610)
+...... ...++.||||||.... ....+.++ ..+. -.++.++||++++
T Consensus 277 l~~l~~~--------------------~~~D~VLIDTAGr~~~--------d~~~l~EL-~~l~~~~~p~~~~LVLsag- 326 (407)
T PRK12726 277 VQYMTYV--------------------NCVDHILIDTVGRNYL--------AEESVSEI-SAYTDVVHPDLTCFTFSSG- 326 (407)
T ss_pred HHHHHhc--------------------CCCCEEEEECCCCCcc--------CHHHHHHH-HHHhhccCCceEEEECCCc-
Confidence 4322100 1248999999998652 12233332 2232 2456666666442
Q ss_pred CccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHc
Q 007263 185 QDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILE 227 (610)
Q Consensus 185 ~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (610)
....+...+++..... ...-+|+||.|.......+.++..
T Consensus 327 --~~~~d~~~i~~~f~~l-~i~glI~TKLDET~~~G~~Lsv~~ 366 (407)
T PRK12726 327 --MKSADVMTILPKLAEI-PIDGFIITKMDETTRIGDLYTVMQ 366 (407)
T ss_pred --ccHHHHHHHHHhcCcC-CCCEEEEEcccCCCCccHHHHHHH
Confidence 2234555566655543 456678999998877666666643
No 309
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.98 E-value=7.8e-06 Score=72.20 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=76.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 007263 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (610)
Q Consensus 31 ~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (610)
+..|-..+++|++++|||||+-.+..-.| ..+.-+++-.-..++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtF-s~sYitTiGvDfkir----------------------------------- 48 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTF-SGSYITTIGVDFKIR----------------------------------- 48 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhccc-ccceEEEeeeeEEEE-----------------------------------
Confidence 34677788999999999999998876543 111111111111111
Q ss_pred hhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-cc
Q 007263 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT 189 (610)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~ 189 (610)
.+.|.+ .-..|.|+||.|-.+ .+.++..|.+.++.+|+|.+..|... .+
T Consensus 49 ----------------Tv~i~G-~~VkLqIwDtAGqEr-------------Frtitstyyrgthgv~vVYDVTn~ESF~N 98 (198)
T KOG0079|consen 49 ----------------TVDING-DRVKLQIWDTAGQER-------------FRTITSTYYRGTHGVIVVYDVTNGESFNN 98 (198)
T ss_pred ----------------EeecCC-cEEEEEEeecccHHH-------------HHHHHHHHccCCceEEEEEECcchhhhHh
Confidence 111221 223688999999644 38889999999999999998776432 22
Q ss_pred -HHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 190 -SDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 190 -~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
...++-++.--+ ..+-+.|-||.|..+.
T Consensus 99 v~rWLeei~~ncd-sv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 99 VKRWLEEIRNNCD-SVPKVLVGNKNDDPER 127 (198)
T ss_pred HHHHHHHHHhcCc-cccceecccCCCCccc
Confidence 223333332222 5788999999997654
No 310
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=2.2e-05 Score=69.73 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=82.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 007263 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (610)
Q Consensus 31 ~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (610)
|.-|-.++|+|+.++|||-||..++...| --++..
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kf-kDdssH-------------------------------------------- 40 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKF-KDDSSH-------------------------------------------- 40 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhh-cccccc--------------------------------------------
Confidence 34578999999999999999999988765 111100
Q ss_pred hhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc-
Q 007263 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT- 189 (610)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~- 189 (610)
..+..|.+..|.+ +-....|.|+||.|..+. ++++++|.+.+-..+||.+..+.|.-+
T Consensus 41 -----TiGveFgSrIinV---GgK~vKLQIWDTAGQErF-------------RSVtRsYYRGAAGAlLVYD~Tsrdsfna 99 (214)
T KOG0086|consen 41 -----TIGVEFGSRIVNV---GGKTVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSRDSFNA 99 (214)
T ss_pred -----eeeeeecceeeee---cCcEEEEEEeecccHHHH-------------HHHHHHHhccccceEEEEeccchhhHHH
Confidence 0011222222222 112346899999996553 889999999999899999887766433
Q ss_pred -HHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 190 -SDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 190 -~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
...+.=++.+.+...-+|.+-||-|+-..
T Consensus 100 LtnWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 100 LTNWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred HHHHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 23444567777777777778899998644
No 311
>PRK13796 GTPase YqeH; Provisional
Probab=97.97 E-value=7e-06 Score=86.94 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~ 58 (610)
..++|||.+|+|||||+|+|++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 369999999999999999999754
No 312
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.96 E-value=7.7e-06 Score=86.54 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~ 58 (610)
..+++||.+|+|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999999864
No 313
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.94 E-value=0.00018 Score=72.54 Aligned_cols=154 Identities=20% Similarity=0.266 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCC-------ccceeeccCCCcccCChHHHHH
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGS-------REYAEFLHIPRKRFTDFAAVRK 105 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~ 105 (610)
..+.|+++|.+++||||++..|.+. +...+ . .+-+...+... ..|+.....+.....+...+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~~~-------~-~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~ 144 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHGKK-------K-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTR 144 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHHcC-------C-eEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHH
Confidence 3479999999999999999999875 21111 0 11111222110 1111111111111123333433
Q ss_pred HHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHH-hcCCCeEEEEeecCC
Q 007263 106 EIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSY-IEKPNCIILAISPAN 184 (610)
Q Consensus 106 ~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~y-i~~~d~iil~v~~a~ 184 (610)
.+... .. ....++.||||||-.... ...++++..-. ...++-++||++++.
T Consensus 145 ~l~~l-~~-------------------~~~~D~ViIDt~Gr~~~~--------~~~l~el~~~~~~~~~~~~~LVl~a~~ 196 (270)
T PRK06731 145 ALTYF-KE-------------------EARVDYILIDTAGKNYRA--------SETVEEMIETMGQVEPDYICLTLSASM 196 (270)
T ss_pred HHHHH-Hh-------------------cCCCCEEEEECCCCCcCC--------HHHHHHHHHHHhhhCCCeEEEEEcCcc
Confidence 32211 00 013489999999975421 22333332111 235677777776542
Q ss_pred CccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHc
Q 007263 185 QDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILE 227 (610)
Q Consensus 185 ~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (610)
..+++...++...+ -...=+|+||.|.......+.++..
T Consensus 197 ---~~~d~~~~~~~f~~-~~~~~~I~TKlDet~~~G~~l~~~~ 235 (270)
T PRK06731 197 ---KSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPA 235 (270)
T ss_pred ---CHHHHHHHHHHhCC-CCCCEEEEEeecCCCCccHHHHHHH
Confidence 23566677777776 3556788999999877666666544
No 314
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=1.8e-05 Score=83.22 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
-.-++++|++|+||||++..|.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999975
No 315
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.93 E-value=9.2e-06 Score=74.98 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
..++++|..|+|||||+|+|++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 6899999999999999999999754
No 316
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.90 E-value=0.00012 Score=67.34 Aligned_cols=58 Identities=12% Similarity=0.225 Sum_probs=37.9
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
..++.||||||+... ...++..+|.+|+++.|.- .++..+.+- .-...--++|+||+|
T Consensus 91 ~~D~iiIDtaG~~~~----------------~~~~~~~Ad~~ivv~tpe~-----~D~y~~~k~-~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS----------------EVDIASMADTTVVVMAPGA-----GDDIQAIKA-GIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh----------------hhhHHHhCCEEEEEECCCc-----hhHHHHhhh-hHhhhcCEEEEeCCC
Confidence 468999999997542 2358889998988887762 233322221 222234588999998
No 317
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=5.1e-05 Score=80.80 Aligned_cols=134 Identities=22% Similarity=0.290 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
++..+.||-.--.|||||...|+..- | |+-+. ... +++.+-++-+++
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~t------g--~i~~~-------------------~~q------~q~LDkl~vERE 105 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELT------G--TIDNN-------------------IGQ------EQVLDKLQVERE 105 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------C--CCCCC-------------------Cch------hhhhhhhhhhhh
Confidence 45579999999999999999998652 2 11110 000 122222222222
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+ |. .+....-.+...+....-|.+|||||..+.... +.+.+.-++.+||+|+++ +....|..
T Consensus 106 R--GI--TIkaQtasify~~~~~ylLNLIDTPGHvDFs~E-------------VsRslaac~G~lLvVDA~-qGvqAQT~ 167 (650)
T KOG0462|consen 106 R--GI--TIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE-------------VSRSLAACDGALLVVDAS-QGVQAQTV 167 (650)
T ss_pred c--Cc--EEEeeeeEEEEEcCCceEEEeecCCCcccccce-------------ehehhhhcCceEEEEEcC-cCchHHHH
Confidence 2 42 222332233222211234899999999887544 566677789999999765 44444444
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+...+ ..|..+|.|+||+|+-..
T Consensus 168 anf~lAf-e~~L~iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 168 ANFYLAF-EAGLAIIPVLNKIDLPSA 192 (650)
T ss_pred HHHHHHH-HcCCeEEEeeeccCCCCC
Confidence 4333332 347999999999998643
No 318
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=1.8e-05 Score=72.16 Aligned_cols=110 Identities=15% Similarity=0.242 Sum_probs=69.3
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-ccc--HHHHHHHHHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDAIKISREVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~~~--~~~l~l~~~~~~~~~rti~VltK 212 (610)
..|.|||+-|--. .+++...|...++.||+++++.+.+ +.. +.-..+...-.-.|.|.++.+||
T Consensus 69 ~~l~fwdlgGQe~-------------lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lank 135 (197)
T KOG0076|consen 69 APLSFWDLGGQES-------------LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANK 135 (197)
T ss_pred ceeEEEEcCChHH-------------HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcch
Confidence 4689999988533 3889999999999999999987732 221 11122333334568999999999
Q ss_pred ccCCCCCC--cHHHHHc--CcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 213 IDLMDKGT--DAADILE--GKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 213 ~D~~~~~~--~~~~~l~--~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
-|+-+.-+ ++..++. .....-...+.+|+....+++++.+.+....
T Consensus 136 qd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~ 185 (197)
T KOG0076|consen 136 QDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKK 185 (197)
T ss_pred hhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHH
Confidence 99865432 1222222 1112223466677776667777666655443
No 319
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.88 E-value=4.4e-05 Score=79.14 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=49.3
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHH---HHh-cCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEe
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR---SYI-EKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVL 210 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~---~yi-~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~Vl 210 (610)
..++.||||||...... ...+.++.+.+ ..+ ..++-.+||+++.. .++++.-++.....-..+-+|+
T Consensus 196 ~~D~ViIDTaGr~~~~~-----~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~----g~~~~~~a~~f~~~~~~~giIl 266 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKT-----NLMEELKKIKRVIKKADPDAPHEVLLVLDATT----GQNALSQAKAFHEAVGLTGIIL 266 (318)
T ss_pred CCCEEEEeCCCCCcCCH-----HHHHHHHHHHHHHhhhcCCCCceEEEEEECCC----ChHHHHHHHHHHhhCCCCEEEE
Confidence 35899999999865321 12233333221 112 34677778887653 2334434444433335678999
Q ss_pred ecccCCCCCCcHHHHHc
Q 007263 211 TKIDLMDKGTDAADILE 227 (610)
Q Consensus 211 tK~D~~~~~~~~~~~l~ 227 (610)
||.|....+..+.+++.
T Consensus 267 TKlD~t~~~G~~l~~~~ 283 (318)
T PRK10416 267 TKLDGTAKGGVVFAIAD 283 (318)
T ss_pred ECCCCCCCccHHHHHHH
Confidence 99998777666666653
No 320
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.88 E-value=5.3e-05 Score=79.24 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=60.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcc-cccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPR-GSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~-~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+.+||-+|+|||||+|+|++...-|. ....||..|..=.. ..++ .. ++.+. .
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v-~v~d-------------~r---~d~L~--------~ 57 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVV-NPSD-------------PR---LDLLA--------I 57 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEE-Eech-------------hH---HHHHH--------H
Confidence 4689999999999999999999874132 23456666622111 0000 00 00110 1
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecC
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a 183 (610)
+... +. .....+.++|.||+...+..+.. .-+-..+.++.+|+|++||...
T Consensus 58 ~~~~-~~------------~~~a~i~~~DiaGlv~gAs~g~G------lgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 58 YIKP-EK------------VPPTTTEFVDIAGLVGGASKGEG------LGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred HhCC-cC------------cCCceEEEEeccccccchhcccC------cchHHHHHHHhCCEEEEEEeCC
Confidence 1110 00 00124789999999987654321 1234566788999999998754
No 321
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.86 E-value=1.2e-05 Score=80.92 Aligned_cols=104 Identities=25% Similarity=0.326 Sum_probs=64.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+-+.|.+||-+|+||||++|+|+....-|-.--.||--|.+-+.. .+..+| +- ..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~--------------v~d~Rf---d~--------l~ 73 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVE--------------VPDSRF---DL--------LC 73 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceee--------------cCchHH---HH--------HH
Confidence 446899999999999999999998765222223455554322210 000011 00 11
Q ss_pred hhcCCCCccccccEEEEEecCCC---CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecC
Q 007263 113 RETGRTKQISSVPIHLSIYSPNV---VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~---~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a 183 (610)
+ +++|.. ..|+++|..|+++.++.|+. +-+-..+-++.+|+|+-||...
T Consensus 74 ~----------------~Y~~~~~vpa~l~v~DIAGLvkGAs~G~G------LGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 74 P----------------IYGPKSKVPAFLTVYDIAGLVKGASAGEG------LGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred H----------------hcCCcceeeeeEEEEeecccccCcccCcC------chHHHHHhhhhccceeEEEEec
Confidence 1 222221 25899999999998876543 1334556688999999998754
No 322
>PRK14974 cell division protein FtsY; Provisional
Probab=97.86 E-value=2.5e-05 Score=81.25 Aligned_cols=81 Identities=26% Similarity=0.404 Sum_probs=51.3
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
.++.||||||..... ......++.+.+ .-++|.++||+++.. .+++...++.....-.-.-+|+||+|.
T Consensus 223 ~DvVLIDTaGr~~~~-----~~lm~eL~~i~~--~~~pd~~iLVl~a~~----g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTD-----ANLMDELKKIVR--VTKPDLVIFVGDALA----GNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCc-----HHHHHHHHHHHH--hhCCceEEEeecccc----chhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 479999999987532 123333333322 236888888876543 345665566554434557889999999
Q ss_pred CCCCCcHHHHHc
Q 007263 216 MDKGTDAADILE 227 (610)
Q Consensus 216 ~~~~~~~~~~l~ 227 (610)
...+..+..+..
T Consensus 292 ~~~~G~~ls~~~ 303 (336)
T PRK14974 292 DAKGGAALSIAY 303 (336)
T ss_pred CCCccHHHHHHH
Confidence 877766666543
No 323
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.85 E-value=1.9e-05 Score=76.17 Aligned_cols=45 Identities=24% Similarity=0.436 Sum_probs=30.5
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCC
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN 184 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~ 184 (610)
+..++.++|+|||+..+..+... . ..+-+..+.+|.|+.+.++..
T Consensus 107 ~ga~IQllDLPGIieGAsqgkGR--G----RQviavArtaDlilMvLDatk 151 (364)
T KOG1486|consen 107 NGANIQLLDLPGIIEGASQGKGR--G----RQVIAVARTADLILMVLDATK 151 (364)
T ss_pred cCceEEEecCcccccccccCCCC--C----ceEEEEeecccEEEEEecCCc
Confidence 45689999999998876543221 1 123344567999988887764
No 324
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.83 E-value=4.3e-05 Score=79.82 Aligned_cols=133 Identities=19% Similarity=0.303 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
++..|++|-.--.||+||+.+|+..+=--+..+-++- +.-|-+++.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~E--------------------------RvMDSnDlE-------- 49 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAE--------------------------RVMDSNDLE-------- 49 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhh--------------------------hhcCccchh--------
Confidence 6788999999999999999999976510000000000 111111111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+..|.+ +-.+.-.+ ..+...+.+|||||..+.... +.+-++-.|.++|+|++....+. |.-
T Consensus 50 kERGIT--ILaKnTav---~~~~~~INIvDTPGHADFGGE-------------VERvl~MVDgvlLlVDA~EGpMP-QTr 110 (603)
T COG1217 50 KERGIT--ILAKNTAV---NYNGTRINIVDTPGHADFGGE-------------VERVLSMVDGVLLLVDASEGPMP-QTR 110 (603)
T ss_pred hhcCcE--EEecccee---ecCCeEEEEecCCCcCCccch-------------hhhhhhhcceEEEEEEcccCCCC-chh
Confidence 111211 11111111 113356899999998876543 56667788999999987654433 222
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
+ ..+++-..|.+-|+|+||+|.-+..
T Consensus 111 F-VlkKAl~~gL~PIVVvNKiDrp~Ar 136 (603)
T COG1217 111 F-VLKKALALGLKPIVVINKIDRPDAR 136 (603)
T ss_pred h-hHHHHHHcCCCcEEEEeCCCCCCCC
Confidence 2 3344445689999999999986543
No 325
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.83 E-value=6.2e-05 Score=74.10 Aligned_cols=25 Identities=20% Similarity=0.527 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
+-+.|.+.|.+++|||||+++|...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4579999999999999999999853
No 326
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=8.1e-05 Score=80.62 Aligned_cols=133 Identities=17% Similarity=0.269 Sum_probs=83.3
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
.-.++++|.-.+|||+|+.-|++... |.... +.+..|+-++.. .. +.
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~~-----~~e~~lrytD~l---------------------~~----E~-- 174 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTH-PDFSK-----NTEADLRYTDTL---------------------FY----EQ-- 174 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceecc-ccccc-----cccccccccccc---------------------hh----hH--
Confidence 44689999999999999999998864 44422 111111111100 00 11
Q ss_pred hcCCCCccccccEEEEEecCCCC--CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVV--NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~--~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~ 191 (610)
..+.++...+..+-+.+.... -++++||||-.... .+ +-..++.+|.++|+++.+..=..+.
T Consensus 175 --eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~------------DE-~ta~l~~sDgvVlvvDv~EGVmlnt- 238 (971)
T KOG0468|consen 175 --ERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFS------------DE-TTASLRLSDGVVLVVDVAEGVMLNT- 238 (971)
T ss_pred --hcCceEeecceEEEEecCcCceeeeeeecCCCcccch------------HH-HHHHhhhcceEEEEEEcccCceeeH-
Confidence 123345556666655554443 38999999987653 22 4456778999999998775432222
Q ss_pred HHHHHHHhCCCCCceEEEeecccCC
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLM 216 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~ 216 (610)
.++++.+-....++.+|+||+|.+
T Consensus 239 -Er~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 239 -ERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred -HHHHHHHHhccCcEEEEEehhHHH
Confidence 234555555679999999999975
No 327
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.81 E-value=9.5e-05 Score=68.50 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
..+++++|.+|+||||++|++.|...
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 46789999999999999999998653
No 328
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=7.6e-05 Score=81.01 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
-..|+++|..|+||||++..|.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
No 329
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=8.6e-05 Score=79.27 Aligned_cols=153 Identities=14% Similarity=0.174 Sum_probs=78.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCC-------CccceeeccCCCcccCChHHHHHH
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEG-------SREYAEFLHIPRKRFTDFAAVRKE 106 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~ 106 (610)
-..|++||..|+||||++..|.|..++-.+ +..+.+...+.. -..|+.....+.....+..++...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-------~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~a 263 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG-------ADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLM 263 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-------CCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHH
Confidence 357999999999999999999885321000 000111111110 012222222232222333332221
Q ss_pred HHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc
Q 007263 107 IQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD 186 (610)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d 186 (610)
+. .. ...++.+|||+|..... ....+.+..+. ....+.-.+||++++.
T Consensus 264 l~----~l-------------------~~~d~VLIDTaGrsqrd-----~~~~~~l~~l~--~~~~~~~~~LVl~at~-- 311 (420)
T PRK14721 264 LH----EL-------------------RGKHMVLIDTVGMSQRD-----QMLAEQIAMLS--QCGTQVKHLLLLNATS-- 311 (420)
T ss_pred HH----Hh-------------------cCCCEEEecCCCCCcch-----HHHHHHHHHHh--ccCCCceEEEEEcCCC--
Confidence 11 11 23478999999986531 11222222221 1223445667776543
Q ss_pred cccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHc
Q 007263 187 LATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILE 227 (610)
Q Consensus 187 ~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (610)
...+..++++..... ...=+|+||.|-......+.+++.
T Consensus 312 -~~~~~~~~~~~f~~~-~~~~~I~TKlDEt~~~G~~l~~~~ 350 (420)
T PRK14721 312 -SGDTLDEVISAYQGH-GIHGCIITKVDEAASLGIALDAVI 350 (420)
T ss_pred -CHHHHHHHHHHhcCC-CCCEEEEEeeeCCCCccHHHHHHH
Confidence 133444556666553 456678999999877666666654
No 330
>PRK00098 GTPase RsgA; Reviewed
Probab=97.75 E-value=0.00012 Score=75.48 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
.++++|.+|+|||||+|+|+|...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcC
Confidence 689999999999999999999753
No 331
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.75 E-value=0.00033 Score=75.62 Aligned_cols=82 Identities=17% Similarity=0.228 Sum_probs=45.9
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
.++.||||||..... ......+..++.. ...+.-+.||++ ++. ...+..++++.+...+ ..=+|+||+|.
T Consensus 300 ~DlVlIDt~G~~~~d-----~~~~~~L~~ll~~-~~~~~~~~LVl~-a~~--~~~~l~~~~~~f~~~~-~~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRD-----KRLIEELKALIEF-SGEPIDVYLVLS-ATT--KYEDLKDIYKHFSRLP-LDGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCC-----HHHHHHHHHHHhc-cCCCCeEEEEEE-CCC--CHHHHHHHHHHhCCCC-CCEEEEecccc
Confidence 489999999985421 1122333333331 123445556554 432 2334445566666544 34588999998
Q ss_pred CCCCCcHHHHHc
Q 007263 216 MDKGTDAADILE 227 (610)
Q Consensus 216 ~~~~~~~~~~l~ 227 (610)
......+.+++.
T Consensus 370 t~~~G~i~~~~~ 381 (424)
T PRK05703 370 TSSLGSILSLLI 381 (424)
T ss_pred cccccHHHHHHH
Confidence 766555556544
No 332
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.74 E-value=1.3e-05 Score=73.19 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=45.9
Q ss_pred cEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH-HHHHHHHhCC--CCCceEEEeeccc
Q 007263 138 LTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD-AIKISREVDP--TGERTFGVLTKID 214 (610)
Q Consensus 138 ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~-~l~l~~~~~~--~~~rti~VltK~D 214 (610)
+.++||.|--. ...+++.|.+.+.+.+||++.. |...-+ .+.+-+++.. ...||++|-||+|
T Consensus 71 ~mlWdtagqeE-------------fDaItkAyyrgaqa~vLVFSTT--Dr~SFea~~~w~~kv~~e~~~IPtV~vqNKID 135 (246)
T KOG4252|consen 71 SMLWDTAGQEE-------------FDAITKAYYRGAQASVLVFSTT--DRYSFEATLEWYNKVQKETERIPTVFVQNKID 135 (246)
T ss_pred HHHHHhccchh-------------HHHHHHHHhccccceEEEEecc--cHHHHHHHHHHHHHHHHHhccCCeEEeeccch
Confidence 56799988543 2677889999999999988643 332222 2333333332 3589999999999
Q ss_pred CCCCC
Q 007263 215 LMDKG 219 (610)
Q Consensus 215 ~~~~~ 219 (610)
++++.
T Consensus 136 lveds 140 (246)
T KOG4252|consen 136 LVEDS 140 (246)
T ss_pred hhHhh
Confidence 98654
No 333
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.74 E-value=0.00015 Score=85.26 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=45.7
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
.|.++||||||.... ..+...+...+|++++|+++.+ .+. ......+..+...+.|+|+|+||+|
T Consensus 525 ~p~i~fiDTPGhe~F-------------~~lr~~g~~~aDivlLVVDa~~-Gi~-~qT~e~I~~lk~~~iPiIVViNKiD 589 (1049)
T PRK14845 525 IPGLLFIDTPGHEAF-------------TSLRKRGGSLADLAVLVVDINE-GFK-PQTIEAINILRQYKTPFVVAANKID 589 (1049)
T ss_pred cCcEEEEECCCcHHH-------------HHHHHhhcccCCEEEEEEECcc-cCC-HhHHHHHHHHHHcCCCEEEEEECCC
Confidence 467999999995432 3344556788999999997653 222 2233333333445689999999999
Q ss_pred CCC
Q 007263 215 LMD 217 (610)
Q Consensus 215 ~~~ 217 (610)
+..
T Consensus 590 L~~ 592 (1049)
T PRK14845 590 LIP 592 (1049)
T ss_pred Ccc
Confidence 974
No 334
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00011 Score=64.24 Aligned_cols=121 Identities=17% Similarity=0.268 Sum_probs=77.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
+-.-+++|+.++|||-||..++...| ...||-.+-
T Consensus 11 ifkyiiigdmgvgkscllhqftekkf-------madcphtig-------------------------------------- 45 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKF-------MADCPHTIG-------------------------------------- 45 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHH-------hhcCCcccc--------------------------------------
Confidence 44678999999999999999998876 244562221
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~ 191 (610)
..|-... +++++. ...|.++||.|..+. +.++++|.+.+-..+.|.+......-+ +.
T Consensus 46 -----vefgtri--ievsgq-kiklqiwdtagqerf-------------ravtrsyyrgaagalmvyditrrstynhlss 104 (215)
T KOG0097|consen 46 -----VEFGTRI--IEVSGQ-KIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRRSTYNHLSS 104 (215)
T ss_pred -----eecceeE--EEecCc-EEEEEEeecccHHHH-------------HHHHHHHhccccceeEEEEehhhhhhhhHHH
Confidence 1111111 223222 236889999996553 888999999988777776644322112 23
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCC
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGT 220 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~ 220 (610)
.+.-++.+..-+.-++.+-||.|+-+...
T Consensus 105 wl~dar~ltnpnt~i~lignkadle~qrd 133 (215)
T KOG0097|consen 105 WLTDARNLTNPNTVIFLIGNKADLESQRD 133 (215)
T ss_pred HHhhhhccCCCceEEEEecchhhhhhccc
Confidence 34345555444566777889999976543
No 335
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.71 E-value=0.00025 Score=69.59 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
+-+-|+|||-.||||+|++..|.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHH
Confidence 4568999999999999999999875
No 336
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=1.9e-05 Score=84.76 Aligned_cols=101 Identities=20% Similarity=0.332 Sum_probs=58.3
Q ss_pred CCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc--------cHHHHHHHHHhCCCCC
Q 007263 133 PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--------TSDAIKISREVDPTGE 204 (610)
Q Consensus 133 ~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~--------~~~~l~l~~~~~~~~~ 204 (610)
+.-..+||+|+||.-+.. .+|+ .-+..+|+.||||++....++ +.+...+++.+. -.
T Consensus 252 s~~~~~tliDaPGhkdFi------------~nmi-~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~ 316 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFI------------PNMI-SGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--IS 316 (603)
T ss_pred cCceeEEEecCCCccccc------------hhhh-ccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cc
Confidence 555679999999954321 2222 234578999999986543221 223334555544 36
Q ss_pred ceEEEeecccCCCCCCc-HHH-------HH-cCcccc-cCCCeeEeeeCChhhh
Q 007263 205 RTFGVLTKIDLMDKGTD-AAD-------IL-EGKSYR-LKFPWIGVVNRSQADI 248 (610)
Q Consensus 205 rti~VltK~D~~~~~~~-~~~-------~l-~~~~~~-l~~g~~~v~~~s~~~~ 248 (610)
..|+++||+|+++=..+ ..+ +| +..-.. -...|++++..+++++
T Consensus 317 qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 317 QLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENL 370 (603)
T ss_pred eEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcc
Confidence 78999999999954333 222 22 111111 1237888877776543
No 337
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.71 E-value=2.8e-05 Score=82.33 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=27.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCccccccccccc
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p 71 (610)
.-.|..||-+|+||||+||+|+|... .-||+.|
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk-----VsVS~TP 346 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK-----VSVSSTP 346 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce-----eeeecCC
Confidence 45788899999999999999999886 4556666
No 338
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.70 E-value=0.00026 Score=71.91 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=48.4
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc-----CCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEE
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE-----KPNCIILAISPANQDLATSDAIKISREVDPTGERTFGV 209 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~-----~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~V 209 (610)
..++.||||||..... ......+..+. +.+. .+|-++||+++.. ..+++..+......-...-+|
T Consensus 154 ~~D~ViIDT~G~~~~d-----~~~~~el~~~~-~~~~~~~~~~~~~~~LVl~a~~----~~~~~~~~~~f~~~~~~~g~I 223 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNK-----VNLMDELKKIK-RVIKKVDKDAPDEVLLVLDATT----GQNALEQAKVFNEAVGLTGII 223 (272)
T ss_pred CCCEEEEeCCCCCcch-----HHHHHHHHHHH-HHHhcccCCCCceEEEEEECCC----CHHHHHHHHHHHhhCCCCEEE
Confidence 3589999999986531 11223333322 2222 3788888887643 233444444433223467889
Q ss_pred eecccCCCCCCcHHHHHc
Q 007263 210 LTKIDLMDKGTDAADILE 227 (610)
Q Consensus 210 ltK~D~~~~~~~~~~~l~ 227 (610)
+||+|.......+.++..
T Consensus 224 lTKlDe~~~~G~~l~~~~ 241 (272)
T TIGR00064 224 LTKLDGTAKGGIILSIAY 241 (272)
T ss_pred EEccCCCCCccHHHHHHH
Confidence 999999877665655543
No 339
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.67 E-value=9.4e-05 Score=74.59 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
..+++|..|+|||||+|+|.+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 6888999999999999999985
No 340
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=2.1e-05 Score=70.32 Aligned_cols=97 Identities=11% Similarity=0.188 Sum_probs=60.0
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-cccHHHHHHHHHhC----CCCCceEEEee
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISREVD----PTGERTFGVLT 211 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~~~~~~l~l~~~~~----~~~~rti~Vlt 211 (610)
.|.|+||.|..+. ++++..|.+++=..+|+++-.+.. +.+ ...++.++. -...-++.+-|
T Consensus 68 hLQlWDTAGQERF-------------RSLTTAFfRDAMGFlLiFDlT~eqSFLn--vrnWlSQL~~hAYcE~PDivlcGN 132 (219)
T KOG0081|consen 68 HLQLWDTAGQERF-------------RSLTTAFFRDAMGFLLIFDLTSEQSFLN--VRNWLSQLQTHAYCENPDIVLCGN 132 (219)
T ss_pred EEeeeccccHHHH-------------HHHHHHHHHhhccceEEEeccchHHHHH--HHHHHHHHHHhhccCCCCEEEEcC
Confidence 6899999997553 888999999998888888766531 111 112222222 22456788899
Q ss_pred cccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhh
Q 007263 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADI 248 (610)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~ 248 (610)
|+|+.+...--.+-......+.+++|+..++-...++
T Consensus 133 K~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv 169 (219)
T KOG0081|consen 133 KADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNV 169 (219)
T ss_pred ccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCH
Confidence 9999765422122222234566778887765544433
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.64 E-value=0.0003 Score=75.87 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=50.4
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCC
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLM 216 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~ 216 (610)
++.||||||-.... +...+.+..+ ..+-.+|.++|++++.. .+++...++.....-..+-+|+||.|..
T Consensus 177 DvVIIDTAGr~~~d-----~~lm~El~~l--~~~~~pdevlLVvda~~----gq~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHALE-----EDLIEEMKEI--KEAVKPDEVLLVIDATI----GQQAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccch-----HHHHHHHHHH--HHHhcccceeEEEeccc----cHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 78999999976531 1122222222 22346888888887644 2566677776654434566799999987
Q ss_pred CCCCcHHHHHc
Q 007263 217 DKGTDAADILE 227 (610)
Q Consensus 217 ~~~~~~~~~l~ 227 (610)
..+..+..+..
T Consensus 246 a~~G~~ls~~~ 256 (437)
T PRK00771 246 AKGGGALSAVA 256 (437)
T ss_pred CcccHHHHHHH
Confidence 77665665543
No 342
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.64 E-value=0.00021 Score=73.25 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
..++++|.+|+|||||+|+|+|...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 4799999999999999999999864
No 343
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00073 Score=71.73 Aligned_cols=152 Identities=18% Similarity=0.321 Sum_probs=79.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCC-------CccceeeccCCCcccCChHHHHHHH
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEG-------SREYAEFLHIPRKRFTDFAAVRKEI 107 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~i 107 (610)
..|++||.+|+||||.+-.|...-.+ .+ .+....+.+.+.+.. ...|++....|-....++.++...+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~-~~----~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L 249 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGI-NS----DDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI 249 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh-hh----ccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH
Confidence 36889999999999999988754110 00 011112233333321 1223333333333333444443332
Q ss_pred HHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc---CCCeEEEEeecCC
Q 007263 108 QDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE---KPNCIILAISPAN 184 (610)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~---~~d~iil~v~~a~ 184 (610)
.. . ...++.||||||.... +. ..+.++ ..++. ...-++||+++..
T Consensus 250 ~~----~-------------------~~~DlVLIDTaGr~~~-------~~-~~l~el-~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 250 TQ----S-------------------KDFDLVLVDTIGKSPK-------DF-MKLAEM-KELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred HH----h-------------------CCCCEEEEcCCCCCcc-------CH-HHHHHH-HHHHHhcCCCCeEEEEEcCCC
Confidence 21 1 1248999999997642 11 123332 22222 2334667766543
Q ss_pred CccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHc
Q 007263 185 QDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILE 227 (610)
Q Consensus 185 ~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (610)
. ..+..+.+....+. ..+=+|+||.|-......+.+++.
T Consensus 298 -~--~~~~~~~~~~~~~~-~~~~~I~TKlDet~~~G~~l~~~~ 336 (388)
T PRK12723 298 -K--TSDVKEIFHQFSPF-SYKTVIFTKLDETTCVGNLISLIY 336 (388)
T ss_pred -C--HHHHHHHHHHhcCC-CCCEEEEEeccCCCcchHHHHHHH
Confidence 2 23333455555443 356788999999877766666654
No 344
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.60 E-value=0.00015 Score=68.51 Aligned_cols=79 Identities=18% Similarity=0.352 Sum_probs=45.2
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
..++.++||||..... ......+..+. ....++.+++++++.. ..+..+.+........-.-+|+||+|
T Consensus 82 ~~d~viiDt~g~~~~~-----~~~l~~l~~l~--~~~~~~~~~lVv~~~~----~~~~~~~~~~~~~~~~~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQID-----ENLMEELKKIK--RVVKPDEVLLVVDAMT----GQDAVNQAKAFNEALGITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccchhh-----HHHHHHHHHHH--hhcCCCeEEEEEECCC----ChHHHHHHHHHHhhCCCCEEEEECCc
Confidence 3578999999986421 11222222221 1235888889887642 23344444444322225778899999
Q ss_pred CCCCCCcHHH
Q 007263 215 LMDKGTDAAD 224 (610)
Q Consensus 215 ~~~~~~~~~~ 224 (610)
.........+
T Consensus 151 ~~~~~g~~~~ 160 (173)
T cd03115 151 GDARGGAALS 160 (173)
T ss_pred CCCCcchhhh
Confidence 8876655444
No 345
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00019 Score=76.16 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=46.9
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHH--HHhc--CCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEe
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR--SYIE--KPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVL 210 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~--~yi~--~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~Vl 210 (610)
..++.||||||..... ..+++++.. ..+. .+.-.+||+++.. ...+....++.... -...=+|+
T Consensus 299 ~~D~VLIDTaGr~~rd--------~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~---~~~~~~~~~~~f~~-~~~~glIl 366 (432)
T PRK12724 299 GSELILIDTAGYSHRN--------LEQLERMQSFYSCFGEKDSVENLLVLSSTS---SYHHTLTVLKAYES-LNYRRILL 366 (432)
T ss_pred CCCEEEEeCCCCCccC--------HHHHHHHHHHHHhhcCCCCCeEEEEEeCCC---CHHHHHHHHHHhcC-CCCCEEEE
Confidence 3578999999986421 223333211 1221 2345667776543 23344455555544 34567899
Q ss_pred ecccCCCCCCcHHHHHc
Q 007263 211 TKIDLMDKGTDAADILE 227 (610)
Q Consensus 211 tK~D~~~~~~~~~~~l~ 227 (610)
||.|-......+.+++.
T Consensus 367 TKLDEt~~~G~il~i~~ 383 (432)
T PRK12724 367 TKLDEADFLGSFLELAD 383 (432)
T ss_pred EcccCCCCccHHHHHHH
Confidence 99999877666666653
No 346
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.58 E-value=0.0018 Score=64.82 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
+-+.|.+.|.+|+|||||+++|.-.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHH
Confidence 4568999999999999999999753
No 347
>PRK10867 signal recognition particle protein; Provisional
Probab=97.55 E-value=0.00044 Score=74.40 Aligned_cols=81 Identities=19% Similarity=0.335 Sum_probs=49.5
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
..++.||||||-.... +.....+..+ ... -.++-++||+++.. .+++...++.....-..+-+|+||.|
T Consensus 183 ~~DvVIIDTaGrl~~d-----~~lm~eL~~i-~~~-v~p~evllVlda~~----gq~av~~a~~F~~~~~i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLHID-----EELMDELKAI-KAA-VNPDEILLVVDAMT----GQDAVNTAKAFNEALGLTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCcccC-----HHHHHHHHHH-HHh-hCCCeEEEEEeccc----HHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 3589999999975421 1122222222 222 25777788887542 36677777766644455678899999
Q ss_pred CCCCCCcHHHHH
Q 007263 215 LMDKGTDAADIL 226 (610)
Q Consensus 215 ~~~~~~~~~~~l 226 (610)
....+..+..+.
T Consensus 252 ~~~rgG~alsi~ 263 (433)
T PRK10867 252 GDARGGAALSIR 263 (433)
T ss_pred CcccccHHHHHH
Confidence 766555555543
No 348
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.54 E-value=0.00055 Score=60.33 Aligned_cols=115 Identities=18% Similarity=0.225 Sum_probs=77.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
--+|...|--|+||+|+|.-|.|.+. + ..|
T Consensus 17 EirilllGldnAGKTT~LKqL~sED~--~---hlt--------------------------------------------- 46 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSEDP--R---HLT--------------------------------------------- 46 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccCCh--h---hcc---------------------------------------------
Confidence 34799999999999999999999874 1 111
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
.+.+|+... +...+...|+++|.-|-.. |+-...+|.++.|.+|+|++++.......-..
T Consensus 47 ---pT~GFn~k~----v~~~g~f~LnvwDiGGqr~-------------IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~ 106 (185)
T KOG0074|consen 47 ---PTNGFNTKK----VEYDGTFHLNVWDIGGQRG-------------IRPYWSNYYENVDGLIYVIDSTDEKRFEEISE 106 (185)
T ss_pred ---ccCCcceEE----EeecCcEEEEEEecCCccc-------------cchhhhhhhhccceEEEEEeCCchHhHHHHHH
Confidence 233344332 2333456799999888544 36678999999999999998554322222222
Q ss_pred H---HHHHhCCCCCceEEEeecccCCCC
Q 007263 194 K---ISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 194 ~---l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
. +..+..-...++.+-.||-|++-.
T Consensus 107 el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 107 ELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred HHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 2 333333345778888899997643
No 349
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.54 E-value=0.00059 Score=65.98 Aligned_cols=96 Identities=21% Similarity=0.243 Sum_probs=53.0
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCce--EEEeec
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERT--FGVLTK 212 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rt--i~VltK 212 (610)
..+.++|.|-|+.-... . ...+ ++.+|.++++.+.+.... .. +.+... ++|+||
T Consensus 91 ~~D~iiIEt~G~~l~~~------~--------~~~l--~~~~i~vvD~~~~~~~~~-------~~-~~qi~~ad~~~~~k 146 (199)
T TIGR00101 91 PLEMVFIESGGDNLSAT------F--------SPEL--ADLTIFVIDVAAGDKIPR-------KG-GPGITRSDLLVINK 146 (199)
T ss_pred CCCEEEEECCCCCcccc------c--------chhh--hCcEEEEEEcchhhhhhh-------hh-HhHhhhccEEEEEh
Confidence 35889999999522110 1 0111 466888887765332111 00 112334 899999
Q ss_pred ccCCCC-CCcH---HHHHcCcccccCCCeeEeeeCChhhhhccccHHH
Q 007263 213 IDLMDK-GTDA---ADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 213 ~D~~~~-~~~~---~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
+|+.+. +.+. .+.++. ..-+..++.++..+.+++++...++.
T Consensus 147 ~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~g~gi~el~~~i~ 192 (199)
T TIGR00101 147 IDLAPMVGADLGVMERDAKK--MRGEKPFIFTNLKTKEGLDTVIDWIE 192 (199)
T ss_pred hhccccccccHHHHHHHHHH--hCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 999853 2222 222221 12356788888888877766555443
No 350
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00038 Score=72.53 Aligned_cols=134 Identities=17% Similarity=0.312 Sum_probs=82.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhh--CCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIV--GKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~--G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+||-.|-||||||.|.|+ |..+ +..|.|..+. +.. ....+++.-+.+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaI--q~AG~Vk~rk-------~~~-------------------~a~SDWM~iEkq 64 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAI--QEAGTVKGRK-------SGK-------------------HAKSDWMEIEKQ 64 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchh--hhcceeeecc-------CCc-------------------ccccHHHHHHHh
Confidence 578999999999999999987 3222 1112221111 100 001112211112
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+ | .++++.... +.....-+.|.||||--+.+.. +.+-+.-+|+.+.|+++|. .+ ....
T Consensus 65 R--G--ISVtsSVMq---F~Y~~~~iNLLDTPGHeDFSED-------------TYRtLtAvDsAvMVIDaAK-Gi-E~qT 122 (528)
T COG4108 65 R--G--ISVTSSVMQ---FDYADCLVNLLDTPGHEDFSED-------------TYRTLTAVDSAVMVIDAAK-GI-EPQT 122 (528)
T ss_pred c--C--ceEEeeEEE---eccCCeEEeccCCCCccccchh-------------HHHHHHhhheeeEEEeccc-Cc-cHHH
Confidence 1 2 233333333 2333456889999998776422 5556777899999998876 33 3567
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
+++.....-.+.|++-.+||+|.-..
T Consensus 123 ~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 123 LKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred HHHHHHHhhcCCceEEEeeccccccC
Confidence 78888778889999999999997543
No 351
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.48 E-value=0.00045 Score=72.64 Aligned_cols=170 Identities=18% Similarity=0.285 Sum_probs=94.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+.....+|..--.|||||-..|+..- |..+.+-+. +++-+-+.- +
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t------~~~~~Rem~---------------------------~Q~LDsMdi--E 52 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELT------GGLSEREMR---------------------------AQVLDSMDI--E 52 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------cCcChHHHH---------------------------HHhhhhhhh--H
Confidence 45678889999999999999998653 322222100 111111111 2
Q ss_pred hhcCCCCccccccEEEEEecCC--CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH
Q 007263 113 RETGRTKQISSVPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~--~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~ 190 (610)
+..| ..+-...+++.....+ ...|.||||||..+..-. +.+.+.-+...+|+|+++ +....|
T Consensus 53 RERG--ITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYE-------------VSRSLAACEGalLvVDAs-QGveAQ 116 (603)
T COG0481 53 RERG--ITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYE-------------VSRSLAACEGALLVVDAS-QGVEAQ 116 (603)
T ss_pred hhcC--ceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEE-------------ehhhHhhCCCcEEEEECc-cchHHH
Confidence 2223 3344555556554443 345899999999876543 445566677788888765 455444
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCC---CeeEeeeCChhhhhccccHHH
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKF---PWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~---g~~~v~~~s~~~~~~~~~~~~ 256 (610)
.....-..++ .+.-+|-|+||+|+-...-+ ++......-.++ .-+.++..++.++++..+.+.
T Consensus 117 TlAN~YlAle-~~LeIiPViNKIDLP~Adpe--rvk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv 182 (603)
T COG0481 117 TLANVYLALE-NNLEIIPVLNKIDLPAADPE--RVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIV 182 (603)
T ss_pred HHHHHHHHHH-cCcEEEEeeecccCCCCCHH--HHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHH
Confidence 3333222233 36789999999999643321 221111111122 344556666666665554443
No 352
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.46 E-value=0.00064 Score=66.23 Aligned_cols=25 Identities=20% Similarity=0.508 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|.|+++|..|||||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999864
No 353
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.45 E-value=0.001 Score=64.32 Aligned_cols=85 Identities=26% Similarity=0.471 Sum_probs=56.5
Q ss_pred CcEEEeC-CCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH-HHHHHHHhCCCC-CceEEEeecc
Q 007263 137 NLTLIDL-PGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD-AIKISREVDPTG-ERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDt-PGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~-~l~l~~~~~~~~-~rti~VltK~ 213 (610)
++.+||| .|+ +..-+.-++..|.+|.|++|+...+.+.+ ..+++.+ .| +|+.+|+||+
T Consensus 135 e~VivDtEAGi----------------EHfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~e---lg~k~i~~V~NKv 195 (255)
T COG3640 135 EVVIVDTEAGI----------------EHFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEE---LGIKRIFVVLNKV 195 (255)
T ss_pred cEEEEecccch----------------hhhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHH---hCCceEEEEEeec
Confidence 5778887 555 33445557789999999998765554432 2234444 45 9999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChh
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQA 246 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~ 246 (610)
|.. + ..+......+++.+.++.+.+.+
T Consensus 196 ~e~--e----~~~~~~~~~~~~~vlg~iP~d~~ 222 (255)
T COG3640 196 DEE--E----ELLRELAEELGLEVLGVIPYDPE 222 (255)
T ss_pred cch--h----HHHHhhhhccCCeEEEEccCCHH
Confidence 965 1 22333455667778888887754
No 354
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.00046 Score=70.86 Aligned_cols=79 Identities=27% Similarity=0.345 Sum_probs=50.3
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecc
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
+..++.||||.|-+. |..++-+.... +.+++ +||.||+|+++.. -+.+...++.....-.-+=++|||.
T Consensus 182 e~fdvIIvDTSGRh~-----qe~sLfeEM~~-v~~ai-~Pd~vi~VmDasi----GQaae~Qa~aFk~~vdvg~vIlTKl 250 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHK-----QEASLFEEMKQ-VSKAI-KPDEIIFVMDASI----GQAAEAQARAFKETVDVGAVILTKL 250 (483)
T ss_pred cCCcEEEEeCCCchh-----hhHHHHHHHHH-HHhhc-CCCeEEEEEeccc----cHhHHHHHHHHHHhhccceEEEEec
Confidence 346899999999765 23333333333 33334 5899999998654 2445555555555445567899999
Q ss_pred cCCCCCCcHH
Q 007263 214 DLMDKGTDAA 223 (610)
Q Consensus 214 D~~~~~~~~~ 223 (610)
|--..+.-++
T Consensus 251 DGhakGGgAl 260 (483)
T KOG0780|consen 251 DGHAKGGGAL 260 (483)
T ss_pred ccCCCCCcee
Confidence 9887765443
No 355
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00057 Score=67.69 Aligned_cols=130 Identities=18% Similarity=0.351 Sum_probs=75.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
.|..||....|||||.-||++. ..-.+.+ ...+++++.+.-+ ++..
T Consensus 14 NigtiGHvdHGKTTLtaAit~~-la~~~~~------------------------------~~~~y~~id~aPe---Ek~r 59 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTV-LAKKGGA------------------------------EAKAYDQIDNAPE---EKAR 59 (394)
T ss_pred EEEEeccccCchhhHHHHHHHH-HHhhccc------------------------------cccchhhhccCch---Hhhc
Confidence 6889999999999999999974 2111111 1112222221111 1111
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-ccHHHHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDAIK 194 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~~~~l~ 194 (610)
| +.-++-.++... ...+...||.||-.+ .+++|+-... +.|..||+|.++.... .+.+..-
T Consensus 60 G----ITIntahveyet-~~rhyahVDcPGHaD------------YvKNMItgAa-qmDgAILVVsA~dGpmPqTrEHiL 121 (394)
T COG0050 60 G----ITINTAHVEYET-ANRHYAHVDCPGHAD------------YVKNMITGAA-QMDGAILVVAATDGPMPQTREHIL 121 (394)
T ss_pred C----ceeccceeEEec-CCceEEeccCCChHH------------HHHHHhhhHH-hcCccEEEEEcCCCCCCcchhhhh
Confidence 2 222233333333 345789999999643 3466665554 4566677776654433 3345555
Q ss_pred HHHHhCCCCCceEEEeecccCCCCC
Q 007263 195 ISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
+++++.- .++++++||+|++++.
T Consensus 122 larqvGv--p~ivvflnK~Dmvdd~ 144 (394)
T COG0050 122 LARQVGV--PYIVVFLNKVDMVDDE 144 (394)
T ss_pred hhhhcCC--cEEEEEEecccccCcH
Confidence 6776632 3788889999999754
No 356
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00073 Score=70.86 Aligned_cols=106 Identities=20% Similarity=0.224 Sum_probs=59.8
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecC-CCccccHHHHHHHHHhCCCC-CceEEEeeccc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA-NQDLATSDAIKISREVDPTG-ERTFGVLTKID 214 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a-~~d~~~~~~l~l~~~~~~~~-~rti~VltK~D 214 (610)
.++|||.||.-+ .+.+|+ .-+...|+.+|||.+. ..+..+.+.+.++ |-.| .+.++|+||+|
T Consensus 51 ~~~fIDvpgh~~------------~i~~mi-ag~~~~d~alLvV~~deGl~~qtgEhL~iL---dllgi~~giivltk~D 114 (447)
T COG3276 51 VMGFIDVPGHPD------------FISNLL-AGLGGIDYALLVVAADEGLMAQTGEHLLIL---DLLGIKNGIIVLTKAD 114 (447)
T ss_pred ceEEeeCCCcHH------------HHHHHH-hhhcCCceEEEEEeCccCcchhhHHHHHHH---HhcCCCceEEEEeccc
Confidence 599999999643 233432 2345678888888652 2234444444444 4444 45699999999
Q ss_pred CCCCCC---cHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHH
Q 007263 215 LMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 259 (610)
Q Consensus 215 ~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (610)
..++.. -..+++.... .-....+.++..+.++++++...+....
T Consensus 115 ~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 115 RVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHHHHHhh
Confidence 987541 1123333222 1123445555556666666555554444
No 357
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.38 E-value=0.00019 Score=71.82 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.-+.+.|||-||+|||||+||+-...
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~ 167 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVH 167 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHH
Confidence 46799999999999999999987543
No 358
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.0053 Score=64.66 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=56.3
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHH-HHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR-SYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~-~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..++.||||.|=... ..+.+.++.. .-+-+||-++||+++.. -|++...|+..+..-.=|=+|+||.
T Consensus 182 ~~DvvIvDTAGRl~i--------de~Lm~El~~Ik~~~~P~E~llVvDam~----GQdA~~~A~aF~e~l~itGvIlTKl 249 (451)
T COG0541 182 GYDVVIVDTAGRLHI--------DEELMDELKEIKEVINPDETLLVVDAMI----GQDAVNTAKAFNEALGITGVILTKL 249 (451)
T ss_pred CCCEEEEeCCCcccc--------cHHHHHHHHHHHhhcCCCeEEEEEeccc----chHHHHHHHHHhhhcCCceEEEEcc
Confidence 358999999996653 2233333322 23557888999998764 5788889998888767778899999
Q ss_pred cCCCCCCcHHHH
Q 007263 214 DLMDKGTDAADI 225 (610)
Q Consensus 214 D~~~~~~~~~~~ 225 (610)
|--..+.-++.+
T Consensus 250 DGdaRGGaALS~ 261 (451)
T COG0541 250 DGDARGGAALSA 261 (451)
T ss_pred cCCCcchHHHhh
Confidence 987776555443
No 359
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0014 Score=57.71 Aligned_cols=124 Identities=22% Similarity=0.284 Sum_probs=78.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+--+|+.+|-..|||+|+|-.|--.. .+|..|
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~-------~~~~ip----------------------------------------- 47 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQ-------SVTTIP----------------------------------------- 47 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCC-------Cccccc-----------------------------------------
Confidence 34689999999999999998885321 233333
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+.+|+-..+.. ...-+.++|+-|-.+ ++.+.+.|......+|+|++++..|--...-
T Consensus 48 -----TvGFnvetVty-----kN~kfNvwdvGGqd~-------------iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr 104 (180)
T KOG0071|consen 48 -----TVGFNVETVTY-----KNVKFNVWDVGGQDK-------------IRPLWRHYYTGTQGLIFVVDSADRDRIEEAR 104 (180)
T ss_pred -----ccceeEEEEEe-----eeeEEeeeeccCchh-------------hhHHHHhhccCCceEEEEEeccchhhHHHHH
Confidence 22333333222 223577899888654 4888999999999999999988653221111
Q ss_pred HHHHHHhCC---CCCceEEEeecccCCCCCC--cHHHHHc
Q 007263 193 IKISREVDP---TGERTFGVLTKIDLMDKGT--DAADILE 227 (610)
Q Consensus 193 l~l~~~~~~---~~~rti~VltK~D~~~~~~--~~~~~l~ 227 (610)
.++-+-+.. ...+.++..||-|+-+.-+ ++.+.++
T Consensus 105 ~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le 144 (180)
T KOG0071|consen 105 NELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE 144 (180)
T ss_pred HHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc
Confidence 123233322 2467778889999876543 3455554
No 360
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.37 E-value=0.001 Score=80.95 Aligned_cols=56 Identities=27% Similarity=0.373 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCccc
Q 007263 4 LISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (610)
Q Consensus 4 l~~~~~~lq~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~ 63 (610)
+-.+-.+++++...|.......+ ..+ ..||--+|+|.++|||||+|+.- |..| |-.
T Consensus 83 ~~~l~~~~~~a~~~Lk~~~~~~~-~~l-Y~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~ 138 (1169)
T TIGR03348 83 IRELRARFNEALALLKRSRLGGR-RYL-YDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLA 138 (1169)
T ss_pred HHHHHHHHHHHHHHHhhccccCc-hhh-hcCCCEEEECCCCCchhHHHHhC-CCCC-cCc
Confidence 44577788888888875432111 112 48999999999999999999988 7764 554
No 361
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.37 E-value=0.00079 Score=72.40 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=49.8
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
.++.||||||.... ++.....+..+.. .-.++-++||+++.. .+++...++.+...-..+=+|+||+|.
T Consensus 183 ~DvVIIDTaGr~~~-----d~~l~~eL~~i~~--~~~p~e~lLVvda~t----gq~~~~~a~~f~~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 183 FDVVIVDTAGRLQI-----DEELMEELAAIKE--ILNPDEILLVVDAMT----GQDAVNTAKTFNERLGLTGVVLTKLDG 251 (428)
T ss_pred CCEEEEeCCCcccc-----CHHHHHHHHHHHH--hhCCceEEEEEeccc----hHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 57999999997542 1112333333222 336788888887542 467777777765433456788999997
Q ss_pred CCCCCcHHHHH
Q 007263 216 MDKGTDAADIL 226 (610)
Q Consensus 216 ~~~~~~~~~~l 226 (610)
...+..+..+.
T Consensus 252 ~~~~G~~lsi~ 262 (428)
T TIGR00959 252 DARGGAALSVR 262 (428)
T ss_pred cccccHHHHHH
Confidence 65555455553
No 362
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.00037 Score=74.15 Aligned_cols=70 Identities=19% Similarity=0.398 Sum_probs=43.7
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCC-CceEEEeec
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTG-ERTFGVLTK 212 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~-~rti~VltK 212 (610)
....+||...|. + + ..| ....+-+|.++|+++ +|..+.. +.+.++.-+.+.| -|++||+|.
T Consensus 111 K~RRiTflEcp~--D---------l----~~m-iDvaKIaDLVlLlId-gnfGfEM-ETmEFLnil~~HGmPrvlgV~Th 172 (1077)
T COG5192 111 KTRRITFLECPS--D---------L----HQM-IDVAKIADLVLLLID-GNFGFEM-ETMEFLNILISHGMPRVLGVVTH 172 (1077)
T ss_pred ceeEEEEEeChH--H---------H----HHH-HhHHHhhheeEEEec-cccCcee-hHHHHHHHHhhcCCCceEEEEee
Confidence 344688888882 2 1 111 123455888888876 4555432 3444555555665 678999999
Q ss_pred ccCCCCCCc
Q 007263 213 IDLMDKGTD 221 (610)
Q Consensus 213 ~D~~~~~~~ 221 (610)
.|+..+.+.
T Consensus 173 lDlfk~~st 181 (1077)
T COG5192 173 LDLFKNPST 181 (1077)
T ss_pred cccccChHH
Confidence 999977654
No 363
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.00031 Score=71.40 Aligned_cols=146 Identities=25% Similarity=0.378 Sum_probs=81.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccc----ccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV----TRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~----Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
+++|+|.-.+|||||+--|+.-. |..|.|-. =|.|-+++--++..-+.+..-| ....+..++++.+. .
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQge-LDnG~GrARln~FRh~HEiqsGrTSsis~evlGF--d~~g~vVNY~~~~t-----a 240 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGE-LDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGF--DNRGKVVNYAQNMT-----A 240 (591)
T ss_pred EEEEecCcccCcceeeeeeeccc-ccCCCCeeeeehhcchhhhccCcccccchhcccc--cccccccchhhccc-----H
Confidence 79999999999999999888654 56665532 2455555522221111111101 11122223322210 0
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCC-CccccH
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN-QDLATS 190 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~-~d~~~~ 190 (610)
+++.. ..-.=+||||+.|-.+.... .+.. ...| .||+.+|+|.+.. -.+.+.
T Consensus 241 EEi~e----------------~SSKlvTfiDLAGh~kY~~T--------Ti~g-LtgY--~Ph~A~LvVsA~~Gi~~tTr 293 (591)
T KOG1143|consen 241 EEIVE----------------KSSKLVTFIDLAGHAKYQKT--------TIHG-LTGY--TPHFACLVVSADRGITWTTR 293 (591)
T ss_pred HHHHh----------------hhcceEEEeecccchhhhee--------eeee-cccC--CCceEEEEEEcCCCCccccH
Confidence 11111 01113789999997664211 0011 1122 4778878776432 246677
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
+.+-++..++ .|.++++||+|+.++.
T Consensus 294 EHLgl~~AL~---iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 294 EHLGLIAALN---IPFFVLVTKMDLVDRQ 319 (591)
T ss_pred HHHHHHHHhC---CCeEEEEEeeccccch
Confidence 8887777664 7999999999999874
No 364
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.33 E-value=0.00083 Score=70.36 Aligned_cols=171 Identities=16% Similarity=0.226 Sum_probs=98.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCC-------CCccceeeccCCCcccCChHHHHHH
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-------GSREYAEFLHIPRKRFTDFAAVRKE 106 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~ 106 (610)
-.-|++||+.|+||||.|--|..+.++--+ -- .+-+.+++. .-..|+..+..|-....+..++..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~---~~----kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~a 275 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK---KK----KVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEA 275 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc---Cc----ceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHH
Confidence 446899999999999999998876320000 01 112223332 1246788888887777888887776
Q ss_pred HHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCC-CeEEEEeecCCC
Q 007263 107 IQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP-NCIILAISPANQ 185 (610)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~-d~iil~v~~a~~ 185 (610)
+.... ..++.||||-|-... ....+.+ ...|+... +.-+++|.+++.
T Consensus 276 i~~l~-----------------------~~d~ILVDTaGrs~~--------D~~~i~e-l~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 276 IEALR-----------------------DCDVILVDTAGRSQY--------DKEKIEE-LKELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred HHHhh-----------------------cCCEEEEeCCCCCcc--------CHHHHHH-HHHHHhccccceEEEEEecCc
Confidence 64432 238999999997653 2333344 34454433 333444445542
Q ss_pred ccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhh
Q 007263 186 DLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADI 248 (610)
Q Consensus 186 d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~ 248 (610)
-..+...+...+...+-. =+++||.|-...-.+..+++. ..++...|+..-.+-.+|+
T Consensus 324 --K~~dlkei~~~f~~~~i~-~~I~TKlDET~s~G~~~s~~~--e~~~PV~YvT~GQ~VPeDI 381 (407)
T COG1419 324 --KYEDLKEIIKQFSLFPID-GLIFTKLDETTSLGNLFSLMY--ETRLPVSYVTNGQRVPEDI 381 (407)
T ss_pred --chHHHHHHHHHhccCCcc-eeEEEcccccCchhHHHHHHH--HhCCCeEEEeCCCCCCchh
Confidence 234444566666654433 357899997765445666654 2333345554444444444
No 365
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0011 Score=60.17 Aligned_cols=118 Identities=15% Similarity=0.282 Sum_probs=77.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 007263 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (610)
Q Consensus 31 ~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (610)
+.+-..++..|--||||+||++.|=.... +.-.+|-.||.
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHPTS------------------------------------- 56 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPTS------------------------------------- 56 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccc---cccCCCcCCCh-------------------------------------
Confidence 45778999999999999999999865432 22244555510
Q ss_pred hhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH
Q 007263 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (610)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~ 190 (610)
++ +. | .....|-+|+-|-.. .+...+.|+..+|+|++.|++........
T Consensus 57 -E~------------l~--I---g~m~ftt~DLGGH~q-------------Arr~wkdyf~~v~~iv~lvda~d~er~~e 105 (193)
T KOG0077|consen 57 -EE------------LS--I---GGMTFTTFDLGGHLQ-------------ARRVWKDYFPQVDAIVYLVDAYDQERFAE 105 (193)
T ss_pred -HH------------he--e---cCceEEEEccccHHH-------------HHHHHHHHHhhhceeEeeeehhhHHHhHH
Confidence 01 00 1 234678899998654 27778999999999999998775432111
Q ss_pred --HHHH-HHHHhCCCCCceEEEeecccCCCCC
Q 007263 191 --DAIK-ISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 191 --~~l~-l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
..++ +.....-...|.++..||+|.-...
T Consensus 106 s~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 106 SKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 1111 1111112468999999999986544
No 366
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0016 Score=71.78 Aligned_cols=132 Identities=20% Similarity=0.243 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
.+.|-++|+|.--+|||-||..|-|.++--...|. +.+.-+..|.+...++.. |
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeagg----------------------itqqIgAt~fp~~ni~e~----t 526 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGG----------------------ITQQIGATYFPAENIREK----T 526 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccc----------------------eeeeccccccchHHHHHH----H
Confidence 37899999999999999999999987652222221 111122333333433332 2
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC-ccccH
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATS 190 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~-d~~~~ 190 (610)
..+...++ ..-.+|.+.+|||||.-.. .++-......+|.+||+|+-... +..+-
T Consensus 527 k~~~~~~K-----------~~~kvPg~lvIdtpghEsF-------------tnlRsrgsslC~~aIlvvdImhGlepqti 582 (1064)
T KOG1144|consen 527 KELKKDAK-----------KRLKVPGLLVIDTPGHESF-------------TNLRSRGSSLCDLAILVVDIMHGLEPQTI 582 (1064)
T ss_pred HHHHhhhh-----------hhcCCCeeEEecCCCchhh-------------hhhhhccccccceEEEEeehhccCCcchh
Confidence 22211110 0124678999999995443 44444556789999999986542 33344
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLM 216 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~ 216 (610)
+.+.++| ....|.|+.|||+|.+
T Consensus 583 ESi~lLR---~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 583 ESINLLR---MRKTPFIVALNKIDRL 605 (1064)
T ss_pred HHHHHHH---hcCCCeEEeehhhhhh
Confidence 5565555 4568999999999986
No 367
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.0012 Score=64.70 Aligned_cols=81 Identities=22% Similarity=0.376 Sum_probs=53.3
Q ss_pred CcEEEeCCCCCccccCCC-CCchHHHHHHHHHHHhc---------------CCCeEEEEeecCCCccccHHHHHHHHHhC
Q 007263 137 NLTLIDLPGLTKVAVEGQ-PDSIVQDIENMVRSYIE---------------KPNCIILAISPANQDLATSDAIKISREVD 200 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q-~~~~~~~i~~~~~~yi~---------------~~d~iil~v~~a~~d~~~~~~l~l~~~~~ 200 (610)
.||+|||-|+.+--..+. -.-+.+.+......|++ +.++.++.+.|....+-.-+ +-..+.+|
T Consensus 96 KLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslD-Lvtmk~Ld 174 (406)
T KOG3859|consen 96 KLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLD-LVTMKKLD 174 (406)
T ss_pred EEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHH-HHHHHHHh
Confidence 589999999976544322 23356666666666644 34566777777766554333 33556777
Q ss_pred CCCCceEEEeecccCCCCC
Q 007263 201 PTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 201 ~~~~rti~VltK~D~~~~~ 219 (610)
. ..++|-|+-|.|.+...
T Consensus 175 s-kVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 175 S-KVNIIPVIAKADTISKE 192 (406)
T ss_pred h-hhhhHHHHHHhhhhhHH
Confidence 5 47899999999988543
No 368
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.19 E-value=0.0011 Score=72.21 Aligned_cols=95 Identities=18% Similarity=0.251 Sum_probs=50.5
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
.+..+|||+|...... ....... ++... ..+.-.+|++++... .....+.++.+... ..+-+|+||+|.
T Consensus 335 ~d~VLIDTaGr~~~d~-----~~~e~~~-~l~~~-~~p~e~~LVLdAt~~---~~~l~~i~~~f~~~-~~~g~IlTKlDe 403 (484)
T PRK06995 335 KHIVLIDTIGMSQRDR-----MVSEQIA-MLHGA-GAPVKRLLLLNATSH---GDTLNEVVQAYRGP-GLAGCILTKLDE 403 (484)
T ss_pred CCeEEeCCCCcChhhH-----HHHHHHH-HHhcc-CCCCeeEEEEeCCCc---HHHHHHHHHHhccC-CCCEEEEeCCCC
Confidence 3689999999754210 0111111 11111 113335677665432 23344456666554 456778999998
Q ss_pred CCCCCcHHHHHcCcccccCCCeeEeeeC
Q 007263 216 MDKGTDAADILEGKSYRLKFPWIGVVNR 243 (610)
Q Consensus 216 ~~~~~~~~~~l~~~~~~l~~g~~~v~~~ 243 (610)
......+.+++.. ..+..-|++.-.+
T Consensus 404 t~~~G~~l~i~~~--~~lPI~yvt~GQ~ 429 (484)
T PRK06995 404 AASLGGALDVVIR--YKLPLHYVSNGQR 429 (484)
T ss_pred cccchHHHHHHHH--HCCCeEEEecCCC
Confidence 8776666666542 3333445554443
No 369
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.19 E-value=0.00069 Score=60.79 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=46.0
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhC---CCCCceEEEee
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD---PTGERTFGVLT 211 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~---~~~~rti~Vlt 211 (610)
..+|.||||.|..+... +---|.+.+|..+||.+-...|. -+....+.+++. ....-.++|-|
T Consensus 61 ra~L~IWDTAGQErfHA-------------LGPIYYRgSnGalLVyDITDrdS-FqKVKnWV~Elr~mlGnei~l~IVGN 126 (218)
T KOG0088|consen 61 RADLHIWDTAGQERFHA-------------LGPIYYRGSNGALLVYDITDRDS-FQKVKNWVLELRTMLGNEIELLIVGN 126 (218)
T ss_pred eeeeeeeeccchHhhhc-------------cCceEEeCCCceEEEEeccchHH-HHHHHHHHHHHHHHhCCeeEEEEecC
Confidence 35899999999766532 23358899999999987654332 122333444443 33456778999
Q ss_pred cccCCCC
Q 007263 212 KIDLMDK 218 (610)
Q Consensus 212 K~D~~~~ 218 (610)
|+|+-..
T Consensus 127 KiDLEee 133 (218)
T KOG0088|consen 127 KIDLEEE 133 (218)
T ss_pred cccHHHh
Confidence 9998643
No 370
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.003 Score=56.04 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=51.7
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc---ccHHHHHHHHHhCCCCCceEEEee
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL---ATSDAIKISREVDPTGERTFGVLT 211 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~---~~~~~l~l~~~~~~~~~rti~Vlt 211 (610)
...+.++|+-|-++. +-..+.|..+.|++|+||++++.|- +..+-..++.+-.-.+...+++.|
T Consensus 61 NLk~~vwdLggqtSi-------------rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~an 127 (182)
T KOG0072|consen 61 NLKFQVWDLGGQTSI-------------RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFAN 127 (182)
T ss_pred cccceeeEccCcccc-------------cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEec
Confidence 346889999987663 6778999999999999999887652 222333344443334678889999
Q ss_pred cccCCCC
Q 007263 212 KIDLMDK 218 (610)
Q Consensus 212 K~D~~~~ 218 (610)
|.|....
T Consensus 128 KqD~~~~ 134 (182)
T KOG0072|consen 128 KQDYSGA 134 (182)
T ss_pred cccchhh
Confidence 9998644
No 371
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=97.07 E-value=0.63 Score=50.42 Aligned_cols=28 Identities=46% Similarity=0.722 Sum_probs=25.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
.+--.|+|.|+||+|||||||.|.|.+|
T Consensus 35 l~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 35 LSYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred cceeEEEEecCcccchHHHHHHHhccCh
Confidence 4566899999999999999999999987
No 372
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.05 E-value=0.00075 Score=64.16 Aligned_cols=118 Identities=21% Similarity=0.244 Sum_probs=69.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
-.+||||+-.+|||++|-+.+--. ||.+ ..||+.-
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~-fp~~-----yvPTVFd--------------------------------------- 39 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNA-FPEE-----YVPTVFD--------------------------------------- 39 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCc-Cccc-----ccCeEEc---------------------------------------
Confidence 468999999999999999887653 4544 2343321
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~ 194 (610)
.....+.+.......|.|+||.|-.+.. .++-+ ...++|.+++|.+-.+......-.-+
T Consensus 40 --------nys~~v~V~dg~~v~L~LwDTAGqedYD----------rlRpl---sY~~tdvfl~cfsv~~p~S~~nv~~k 98 (198)
T KOG0393|consen 40 --------NYSANVTVDDGKPVELGLWDTAGQEDYD----------RLRPL---SYPQTDVFLLCFSVVSPESFENVKSK 98 (198)
T ss_pred --------cceEEEEecCCCEEEEeeeecCCCcccc----------ccccc---CCCCCCEEEEEEEcCChhhHHHHHhh
Confidence 0011122221122358999999976541 12322 45678999888764432211111112
Q ss_pred HHHHhCC--CCCceEEEeecccCCCC
Q 007263 195 ISREVDP--TGERTFGVLTKIDLMDK 218 (610)
Q Consensus 195 l~~~~~~--~~~rti~VltK~D~~~~ 218 (610)
+.-++.. .+.|+|.|.||.|+.++
T Consensus 99 W~pEi~~~cp~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 99 WIPEIKHHCPNVPIILVGTKADLRDD 124 (198)
T ss_pred hhHHHHhhCCCCCEEEEeehHHhhhC
Confidence 2223322 26999999999999844
No 373
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.0033 Score=63.64 Aligned_cols=65 Identities=25% Similarity=0.441 Sum_probs=41.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcC---CCeEEEEeecCCCccccH--HHHHHHHHhCCCCCceEEEe
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK---PNCIILAISPANQDLATS--DAIKISREVDPTGERTFGVL 210 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~---~d~iil~v~~a~~d~~~~--~~l~l~~~~~~~~~rti~Vl 210 (610)
.+++|||.||- ..+++..+.. -|.++|+++... ...++ +.+-+...+ ..+.++|+
T Consensus 70 lq~tlvDCPGH----------------asLIRtiiggaqiiDlm~lviDv~k-G~QtQtAEcLiig~~~---c~klvvvi 129 (522)
T KOG0461|consen 70 LQFTLVDCPGH----------------ASLIRTIIGGAQIIDLMILVIDVQK-GKQTQTAECLIIGELL---CKKLVVVI 129 (522)
T ss_pred ceeEEEeCCCc----------------HHHHHHHHhhhheeeeeeEEEehhc-ccccccchhhhhhhhh---ccceEEEE
Confidence 46899999996 3345555544 467788876533 33344 334333333 46789999
Q ss_pred ecccCCCCCC
Q 007263 211 TKIDLMDKGT 220 (610)
Q Consensus 211 tK~D~~~~~~ 220 (610)
||+|...++.
T Consensus 130 nkid~lpE~q 139 (522)
T KOG0461|consen 130 NKIDVLPENQ 139 (522)
T ss_pred eccccccchh
Confidence 9999987653
No 374
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0018 Score=65.12 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=27.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEE
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQL 76 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l 76 (610)
.|.+||.--.|||||..||+|.-. ....--.++-+.++|
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvwT--~~hseElkRgitIkL 50 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVWT--DRHSEELKRGITIKL 50 (415)
T ss_pred Eeeeeeecccchhhheehhhceee--echhHHHhcCcEEEe
Confidence 588999999999999999999742 111223345555554
No 375
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.004 Score=63.46 Aligned_cols=143 Identities=19% Similarity=0.258 Sum_probs=83.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCC-CcccccccccccEEEEEEecCCCCccceeecc------CCCcccCChHHHHH
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDF-LPRGSGIVTRRPLVLQLHKLEEGSREYAEFLH------IPRKRFTDFAAVRK 105 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~-lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~ 105 (610)
.+-+.+-+|+---||||||-.|+--.- ++.+ .....+ ...-...||+-+.+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eD----------------------Qla~l~~dS~~~~t~g~~~D~ALLvD 62 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYED----------------------QLASLERDSKRKGTQGEKIDLALLVD 62 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHH----------------------HHHHHhcccccccCCCCccchhhhhh
Confidence 577899999999999999999985321 0110 000111 11223457777777
Q ss_pred HHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC
Q 007263 106 EIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ 185 (610)
Q Consensus 106 ~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~ 185 (610)
-++.++++ |.+. + +-...++.....+.+.||||-.+. .++|+-. ...+|+.|++|++-.
T Consensus 63 GL~AEREQ--GITI----D-VAYRyFsT~KRkFIiADTPGHeQY------------TRNMaTG-ASTadlAIlLVDAR~- 121 (431)
T COG2895 63 GLEAEREQ--GITI----D-VAYRYFSTEKRKFIIADTPGHEQY------------TRNMATG-ASTADLAILLVDARK- 121 (431)
T ss_pred hhHHHHhc--CceE----E-EEeeecccccceEEEecCCcHHHH------------hhhhhcc-cccccEEEEEEecch-
Confidence 77666544 5321 1 122345555678999999996432 1343322 346788889887643
Q ss_pred ccccH-HHH-HHHHHhCCCCCc-eEEEeecccCCCCCCc
Q 007263 186 DLATS-DAI-KISREVDPTGER-TFGVLTKIDLMDKGTD 221 (610)
Q Consensus 186 d~~~~-~~l-~l~~~~~~~~~r-ti~VltK~D~~~~~~~ 221 (610)
....| .-. -++..+ |.| +++.+||+|+++-..+
T Consensus 122 Gvl~QTrRHs~I~sLL---GIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 122 GVLEQTRRHSFIASLL---GIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred hhHHHhHHHHHHHHHh---CCcEEEEEEeeecccccCHH
Confidence 33222 111 133322 544 5566999999986654
No 376
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.75 E-value=0.0023 Score=66.25 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=26.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccc
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~ 64 (610)
..=++.|||-+|+|||||||+|......|+|.
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~ 282 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGN 282 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCCC
Confidence 34489999999999999999999887755553
No 377
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.0046 Score=68.61 Aligned_cols=129 Identities=21% Similarity=0.247 Sum_probs=80.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
....|.+|..--.||+||..+|+-.+- -+..|.+-.+++-.+ -+ + +.+.
T Consensus 8 ~irn~~~vahvdhgktsladsl~asng-----vis~rlagkirfld~---------------------re--d---eq~r 56 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNG-----VISSRLAGKIRFLDT---------------------RE--D---EQTR 56 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhcc-----Eechhhccceeeccc---------------------cc--h---hhhh
Confidence 567899999999999999999986551 244455544442111 00 0 0111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
.++-+..++|. +. ...-+.|||+||..+.. ..+.+...-+|..+++|+.- ... ++..
T Consensus 57 gitmkss~is~------~~--~~~~~nlidspghvdf~-------------sevssas~l~d~alvlvdvv-egv-~~qt 113 (887)
T KOG0467|consen 57 GITMKSSAISL------LH--KDYLINLIDSPGHVDFS-------------SEVSSASRLSDGALVLVDVV-EGV-CSQT 113 (887)
T ss_pred ceeeecccccc------cc--CceEEEEecCCCccchh-------------hhhhhhhhhcCCcEEEEeec-ccc-chhH
Confidence 22222223331 11 22347899999998863 33666666777776666543 333 4556
Q ss_pred HHHHHHhCCCCCceEEEeecccC
Q 007263 193 IKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~ 215 (610)
..++|++=-.|.+.+.|+||+|.
T Consensus 114 ~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 114 YAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred HHHHHHHHHccCceEEEEehhhh
Confidence 66778766678999999999993
No 378
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.59 E-value=0.0098 Score=61.77 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
.+|-.+|.|--|||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999854
No 379
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.53 E-value=0.0019 Score=62.90 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++-+||-+|+||||++..|+|..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~ 83 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF 83 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC
Confidence 478899999999999999999974
No 380
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=96.45 E-value=0.00051 Score=59.76 Aligned_cols=96 Identities=15% Similarity=0.263 Sum_probs=62.8
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-cccH-HHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-DAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~~~~-~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..|.++||.|..+. ++.+..|.+++|+++|+.+.+|.. +.+- ..+.-+.+..........+-||+
T Consensus 47 vklqiwdtagqerf-------------rsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~ 113 (192)
T KOG0083|consen 47 VKLQIWDTAGQERF-------------RSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKC 113 (192)
T ss_pred EEEEEeeccchHHH-------------hhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhcccc
Confidence 35889999997654 788999999999999999877742 3332 33334455555567788999999
Q ss_pred cCCCCCC----cHHHHHcCcccccCCCeeEeeeCChhhh
Q 007263 214 DLMDKGT----DAADILEGKSYRLKFPWIGVVNRSQADI 248 (610)
Q Consensus 214 D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~ 248 (610)
|+..+.. +-.++ ....+++|...+....-++
T Consensus 114 d~a~er~v~~ddg~kl----a~~y~ipfmetsaktg~nv 148 (192)
T KOG0083|consen 114 DLAHERAVKRDDGEKL----AEAYGIPFMETSAKTGFNV 148 (192)
T ss_pred ccchhhccccchHHHH----HHHHCCCceeccccccccH
Confidence 9965321 11222 2233466776666554433
No 381
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.30 E-value=0.011 Score=56.24 Aligned_cols=162 Identities=17% Similarity=0.231 Sum_probs=74.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
.+.|+|+.||||||+-+++... . ..+.|.- ++++-++..+.+..-...+.+.+.+.++|+.+.. .
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h-~-----e~~gRs~---~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~------~ 69 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEH-C-----ETVGRSV---HVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLD------L 69 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHH-H-----HhhCcee---EEeecCHHHHhhCCcccccHHHhccHHHHHHHhc------c
Confidence 3679999999999999999753 1 1222322 4445555433222211223344555555555421 1
Q ss_pred CCCCccc---------cccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC-
Q 007263 116 GRTKQIS---------SVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ- 185 (610)
Q Consensus 116 g~~~~~s---------~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~- 185 (610)
|.+.+.- -+.+.-++ +...-+..+.|.||.+..-+. -.-+...++.+-..+. --|.+++++ ++.
T Consensus 70 GPNGgLv~cmEyl~~NldwL~~~~-Gd~eddylifDcPGQIELytH--~pVm~~iv~hl~~~~F--~~c~Vylld-sqf~ 143 (273)
T KOG1534|consen 70 GPNGGLVYCMEYLLENLDWLEEEI-GDVEDDYLIFDCPGQIELYTH--LPVMPQIVEHLKQWNF--NVCVVYLLD-SQFL 143 (273)
T ss_pred CCCccchhHHHHHHHHHHHHHhhc-cCccCCEEEEeCCCeeEEeec--ChhHHHHHHHHhcccC--ceeEEEEec-cchh
Confidence 2211100 00000001 112346889999997653222 1112233333322111 123444443 221
Q ss_pred -ccc--cHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 186 -DLA--TSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 186 -d~~--~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
|.. -+-++.-....-....|.|-|++|+|++..
T Consensus 144 vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk~ 179 (273)
T KOG1534|consen 144 VDSTKFISGCLSALSAMISLEVPHINVLSKMDLLKD 179 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhhh
Confidence 110 011221111111235789999999999855
No 382
>PRK01889 GTPase RsgA; Reviewed
Probab=96.30 E-value=0.0074 Score=63.81 Aligned_cols=23 Identities=26% Similarity=0.732 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|.+|+|||||+|+|+|..
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhc
Confidence 79999999999999999999975
No 383
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.21 E-value=0.0083 Score=55.38 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEee
Q 007263 162 IENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVV 241 (610)
Q Consensus 162 i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~ 241 (610)
++++.+.+++++|.+|+++++..... .....+...+...+.+.++|+||+|+.+.. ...+. .......+..++.++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~--~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~-~~~~~~~~~~~~~iS 77 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPEL--TRSRKLERYVLELGKKLLIVLNKADLVPKE-VLEKW-KSIKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcc--cCCHHHHHHHHhCCCcEEEEEEhHHhCCHH-HHHHH-HHHHHhCCCcEEEEE
Confidence 46778888999999999998644222 122234444444578999999999986432 11111 100111233566677
Q ss_pred eCChhhhhccccHHHH
Q 007263 242 NRSQADINKNVDMIAA 257 (610)
Q Consensus 242 ~~s~~~~~~~~~~~~~ 257 (610)
+.+..+++.+...+..
T Consensus 78 a~~~~gi~~L~~~l~~ 93 (156)
T cd01859 78 AKERLGTKILRRTIKE 93 (156)
T ss_pred ccccccHHHHHHHHHH
Confidence 7766666655554443
No 384
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.18 E-value=0.03 Score=53.59 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcH---HHHHcCcc-cccC-
Q 007263 160 QDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDA---ADILEGKS-YRLK- 234 (610)
Q Consensus 160 ~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~---~~~l~~~~-~~l~- 234 (610)
..++.++..|++++|.|+++++....+...... +... ..+.++++|+||+|+.+..... ........ ...+
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~--l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 97 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPGSLIPR--LRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGL 97 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCCccchh--HHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 336888999999999999999876433211122 2111 2468999999999997544321 11210000 1111
Q ss_pred --CCeeEeeeCChhhhhccccHHHH
Q 007263 235 --FPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 235 --~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
..++.++..+..+++.+...+..
T Consensus 98 ~~~~i~~vSA~~~~gi~eL~~~l~~ 122 (190)
T cd01855 98 KPKDVILISAKKGWGVEELINAIKK 122 (190)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHH
Confidence 24667777777776665554443
No 385
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.015 Score=60.16 Aligned_cols=134 Identities=19% Similarity=0.291 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
++..|.|+..-.+||+|..+.|+-.. | .++.. + ...+-+.|.+-+..+++
T Consensus 36 kirnigiiahidagktttterily~a------g-~~~s~---------g--------------~vddgdtvtdfla~ere 85 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLA------G-AIHSA---------G--------------DVDDGDTVTDFLAIERE 85 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHh------h-hhhcc---------c--------------ccCCCchHHHHHHHHHh
Confidence 45579999999999999999997432 1 11111 0 11122223333322222
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+ |.+ +-+..+. +......+.+|||||-.+.... +.+.++--|.++.|++++. .. ....
T Consensus 86 r--git--iqsaav~---fdwkg~rinlidtpghvdf~le-------------verclrvldgavav~dasa-gv-e~qt 143 (753)
T KOG0464|consen 86 R--GIT--IQSAAVN---FDWKGHRINLIDTPGHVDFRLE-------------VERCLRVLDGAVAVFDASA-GV-EAQT 143 (753)
T ss_pred c--Cce--eeeeeee---cccccceEeeecCCCcceEEEE-------------HHHHHHHhcCeEEEEeccC-Cc-ccce
Confidence 2 321 1111111 2233456899999998876544 5556666777877776542 22 2345
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
+...++.+....|.+..+||+|....
T Consensus 144 ltvwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 144 LTVWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred eeeehhccccCCchhhhhhhhhhhhh
Confidence 66788899999999999999998743
No 386
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.90 E-value=0.077 Score=54.44 Aligned_cols=40 Identities=30% Similarity=0.435 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEe
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHK 78 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~ 78 (610)
..|+++|||+.++|||||...|+...+ --.|+|+-+.|.-
T Consensus 102 ~GPrv~vVGp~d~GKsTl~r~L~nyav------k~gr~Plfv~LDv 141 (415)
T KOG2749|consen 102 YGPRVMVVGPTDVGKSTLCRILLNYAV------KQGRRPLFVELDV 141 (415)
T ss_pred cCCEEEEECCCccchHHHHHHHHHHHH------HcCCcceEEEcCC
Confidence 589999999999999999999987642 2257776665543
No 387
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.82 E-value=0.086 Score=54.73 Aligned_cols=141 Identities=13% Similarity=0.216 Sum_probs=75.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
.|..+|-|-=||||||+||.|+...- -.|.+..+ .+++++.-..+..+. .
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~-------g~kiAVIV---------NEfGEvgID~~~~l~--------------~ 50 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRD-------GKKIAVIV---------NEFGEVGIDGGALLS--------------D 50 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccC-------CCcEEEEE---------ecCccccccCCCccc--------------c
Confidence 47889999999999999999997541 12222222 234333211000000 0
Q ss_pred hcCCCCccccccEEEEEec------------CCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc--------CC
Q 007263 114 ETGRTKQISSVPIHLSIYS------------PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--------KP 173 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~------------~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--------~~ 173 (610)
....-..++..||+..+.+ .+.++..+|-|-|+..+ ..++..+.. .-
T Consensus 51 ~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~~~D~ivIEtTGlA~P-------------~pv~~t~~~~~~l~~~~~l 117 (323)
T COG0523 51 TGEEVVELTNGCICCTVRDDLLPALERLLRRRDRPDRLVIETTGLADP-------------APVIQTFLTDPELADGVRL 117 (323)
T ss_pred CCccEEEeCCceEEEeccchhHHHHHHHHhccCCCCEEEEeCCCCCCC-------------HHHHHHhccccccccceee
Confidence 0001233555666655211 33478899999999774 222223222 34
Q ss_pred CeEEEEeecCCCccccHHHHH-HHHHhCCCCCceEEEeecccCCCCCC
Q 007263 174 NCIILAISPANQDLATSDAIK-ISREVDPTGERTFGVLTKIDLMDKGT 220 (610)
Q Consensus 174 d~iil~v~~a~~d~~~~~~l~-l~~~~~~~~~rti~VltK~D~~~~~~ 220 (610)
|.+|-+|++.+.......... +..++. .=-++|+||.|++++.+
T Consensus 118 d~vvtvVDa~~~~~~~~~~~~~~~~Qia---~AD~ivlNK~Dlv~~~~ 162 (323)
T COG0523 118 DGVVTVVDAAHFLEGLDAIAELAEDQLA---FADVIVLNKTDLVDAEE 162 (323)
T ss_pred ceEEEEEeHHHhhhhHHHHHHHHHHHHH---hCcEEEEecccCCCHHH
Confidence 668888887653211111111 222222 22389999999998763
No 388
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.80 E-value=0.053 Score=60.76 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.+++||+.|||||||++.|+|.
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999996
No 389
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.76 E-value=0.0085 Score=57.33 Aligned_cols=28 Identities=32% Similarity=0.674 Sum_probs=24.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~ 63 (610)
-.|.|+|+.|||||||+|+|.|. ..|.+
T Consensus 33 ~FvtViGsNGAGKSTlln~iaG~-l~~t~ 60 (263)
T COG1101 33 DFVTVIGSNGAGKSTLLNAIAGD-LKPTS 60 (263)
T ss_pred ceEEEEcCCCccHHHHHHHhhCc-cccCC
Confidence 37999999999999999999997 44554
No 390
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.73 E-value=0.033 Score=58.46 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
.+|-.+|.|--|||||||||.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999853
No 391
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.68 E-value=0.0089 Score=61.65 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHhhhhCCCC
Q 007263 37 IAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 37 IvVvG~~ssGKSSllnal~G~~~ 59 (610)
|.+||-+|+||||+||+|-...+
T Consensus 310 VGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 310 VGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred eeeecCCCCchHHHHHHHhhccc
Confidence 55699999999999999977654
No 392
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.65 E-value=0.023 Score=52.56 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=35.1
Q ss_pred HHHHhcCCCeEEEEeecCCCccc-cHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 166 VRSYIEKPNCIILAISPANQDLA-TSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 166 ~~~yi~~~d~iil~v~~a~~d~~-~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
+++.++++|.|++++++...... .....+.++.. ..+.|.|+|+||+|+.++
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~ 54 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPT 54 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhc-cCCCCEEEEEEchhcCCH
Confidence 45678899999999986543211 23333444432 335899999999999754
No 393
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.63 E-value=0.069 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
-++++|+.||||||||.+|.|.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999995
No 394
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.54 E-value=0.011 Score=55.17 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=25.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~ 64 (610)
-+++|+|..|||||||+|-|.|.. .|.+.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~-~P~~G 54 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFE-TPASG 54 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhcc-CCCCc
Confidence 379999999999999999999986 46653
No 395
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.51 E-value=0.012 Score=57.56 Aligned_cols=54 Identities=30% Similarity=0.430 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEeecC-CCccccH-HHHHHHHHhCCCCCceEEEeeccc
Q 007263 160 QDIENMVRSYIEKPNCIILAISPA-NQDLATS-DAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 160 ~~i~~~~~~yi~~~d~iil~v~~a-~~d~~~~-~~l~l~~~~~~~~~rti~VltK~D 214 (610)
++--.+++..+.+|. |||+=.|. +-|..+. ..+.+++++......|++++|+=.
T Consensus 148 qQRVAIARAL~~~P~-iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 148 QQRVAIARALINNPK-IILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred HHHHHHHHHHhcCCC-eEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 344566777788888 55665554 3355554 455677887766678999999844
No 396
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=95.49 E-value=0.0072 Score=60.47 Aligned_cols=90 Identities=14% Similarity=0.226 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeee
Q 007263 163 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVN 242 (610)
Q Consensus 163 ~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~ 242 (610)
..+++.|++++|.+++|++..+.+.......++...+...+.+.++|+||+|+.+......+.+... ...+..++.+++
T Consensus 27 ~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~v~~~SA 105 (245)
T TIGR00157 27 NELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQVLMTSS 105 (245)
T ss_pred ceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCeEEEEec
Confidence 4566678999999999987665443333333333344446789999999999975432111222111 123445666777
Q ss_pred CChhhhhcccc
Q 007263 243 RSQADINKNVD 253 (610)
Q Consensus 243 ~s~~~~~~~~~ 253 (610)
.+..+++++..
T Consensus 106 ktg~gi~eLf~ 116 (245)
T TIGR00157 106 KNQDGLKELIE 116 (245)
T ss_pred CCchhHHHHHh
Confidence 66666554443
No 397
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.42 E-value=0.015 Score=44.59 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
..++.|+.+|||||++.|+.=
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 398
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.11 Score=57.05 Aligned_cols=28 Identities=36% Similarity=0.592 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~ 65 (610)
.+++||..|+|||||++.|+|. +|-..|
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~--~~~~~G 376 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGF--LAPTQG 376 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCc--CCCCCc
Confidence 7999999999999999999995 454444
No 399
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=95.36 E-value=7.6 Score=45.30 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=20.1
Q ss_pred EcCCCCCHHHHHhhhhCCCCCccc
Q 007263 40 VGGQSSGKSSVLESIVGKDFLPRG 63 (610)
Q Consensus 40 vG~~ssGKSSllnal~G~~~lP~~ 63 (610)
.|+||+|||||||.|.|..| ++-
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~m 23 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DVM 23 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-ccc
Confidence 49999999999999999986 543
No 400
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.35 E-value=0.041 Score=53.25 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHhhhhC
Q 007263 37 IAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 37 IvVvG~~ssGKSSllnal~G 56 (610)
-+|||+|||||||..+....
T Consensus 5 qvVIGPPgSGKsTYc~g~~~ 24 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQ 24 (290)
T ss_pred eEEEcCCCCCccchhhhHHH
Confidence 47999999999999887764
No 401
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.29 E-value=0.11 Score=53.27 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=50.2
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHH---HHHHHhc-CCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIEN---MVRSYIE-KPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~---~~~~yi~-~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~Vlt 211 (610)
.++.||||.|=-.+.. .+.+.++. .+..... .|+-+++++++.. -+.++.-|+.....-.=+=+|+|
T Consensus 222 ~DvvliDTAGRLhnk~-----nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt----Gqnal~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 222 IDVVLIDTAGRLHNKK-----NLMDELKKIVRVIKKDDPDAPHEILLVLDATT----GQNALSQAKIFNEAVGLDGIILT 292 (340)
T ss_pred CCEEEEeCcccccCch-----hHHHHHHHHHHHhccccCCCCceEEEEEEccc----ChhHHHHHHHHHHhcCCceEEEE
Confidence 5899999999655432 24444444 2222222 3455777777653 35566666666655456678999
Q ss_pred cccCCCCCCcHHHH
Q 007263 212 KIDLMDKGTDAADI 225 (610)
Q Consensus 212 K~D~~~~~~~~~~~ 225 (610)
|+|....|.-+..+
T Consensus 293 KlDgtAKGG~il~I 306 (340)
T COG0552 293 KLDGTAKGGIILSI 306 (340)
T ss_pred ecccCCCcceeeeH
Confidence 99977776544444
No 402
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=95.18 E-value=0.071 Score=54.31 Aligned_cols=133 Identities=19% Similarity=0.348 Sum_probs=79.0
Q ss_pred CCCe--EEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 007263 33 SLPA--IAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (610)
Q Consensus 33 ~lP~--IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (610)
+.|. |.-||.-..||+||.-||+.. |... ...++..++++-+.-++
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITki--la~~-----------------------------g~A~~~kydeID~APEE- 98 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKI--LAEK-----------------------------GGAKFKKYDEIDKAPEE- 98 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHH--HHhc-----------------------------cccccccHhhhhcChhh-
Confidence 5564 556999999999999999864 2111 11233334444332211
Q ss_pred hhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-ccc
Q 007263 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT 189 (610)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~~~ 189 (610)
+..++.-+.-.++..++ ..+..=+|.||-.+ .|++|+-... +-|..||||.+.... ..+
T Consensus 99 ------kaRGITIn~aHveYeTa-~RhYaH~DCPGHAD------------YIKNMItGaa-qMDGaILVVaatDG~MPQT 158 (449)
T KOG0460|consen 99 ------KARGITINAAHVEYETA-KRHYAHTDCPGHAD------------YIKNMITGAA-QMDGAILVVAATDGPMPQT 158 (449)
T ss_pred ------hhccceEeeeeeeeecc-ccccccCCCCchHH------------HHHHhhcCcc-ccCceEEEEEcCCCCCcch
Confidence 12233434444544443 34677799999643 3455544433 345666777544332 345
Q ss_pred HHHHHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 190 SDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 190 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
.+.+-+|+++.- .++++.+||.|.+++.
T Consensus 159 rEHlLLArQVGV--~~ivvfiNKvD~V~d~ 186 (449)
T KOG0460|consen 159 REHLLLARQVGV--KHIVVFINKVDLVDDP 186 (449)
T ss_pred HHHHHHHHHcCC--ceEEEEEecccccCCH
Confidence 677778998864 6788889999999654
No 403
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=95.18 E-value=0.04 Score=56.50 Aligned_cols=29 Identities=38% Similarity=0.643 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~ 65 (610)
+|+|||.-.+||||||--|+.-. |..|.|
T Consensus 135 RVAVVGNVDAGKSTLLGVLTHge-LDnGRG 163 (641)
T KOG0463|consen 135 RVAVVGNVDAGKSTLLGVLTHGE-LDNGRG 163 (641)
T ss_pred EEEEEecccCCcceeEeeeeecc-cccCcc
Confidence 79999999999999999888654 444444
No 404
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.14 E-value=0.023 Score=54.71 Aligned_cols=50 Identities=14% Similarity=0.348 Sum_probs=35.6
Q ss_pred hcCCCeEEEEeecCCCccc-----cHHHHHHHHHhCCCCCceEEEeecccCCCCCC
Q 007263 170 IEKPNCIILAISPANQDLA-----TSDAIKISREVDPTGERTFGVLTKIDLMDKGT 220 (610)
Q Consensus 170 i~~~d~iil~v~~a~~d~~-----~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~ 220 (610)
.++.+++|.+.+....++. .+.+++...+..| ..+++..++|.|++..+.
T Consensus 79 F~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 79 FRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred heeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcccch
Confidence 4577889999887665332 2445555556666 489999999999997654
No 405
>PRK12289 GTPase RsgA; Reviewed
Probab=95.11 E-value=0.024 Score=59.70 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeee
Q 007263 163 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVN 242 (610)
Q Consensus 163 ~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~ 242 (610)
..+.+.++.++|.+++|++..+.++......+++..+...+.+.++|+||+|++++.. ...... .....+..++.++.
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~-~~~~~~-~~~~~g~~v~~iSA 157 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTE-QQQWQD-RLQQWGYQPLFISV 157 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHH-HHHHHH-HHHhcCCeEEEEEc
Confidence 3455677899999999988665443332223333344456899999999999985421 111111 01122334455555
Q ss_pred CChhhhhccc
Q 007263 243 RSQADINKNV 252 (610)
Q Consensus 243 ~s~~~~~~~~ 252 (610)
.+..+++.+.
T Consensus 158 ~tg~GI~eL~ 167 (352)
T PRK12289 158 ETGIGLEALL 167 (352)
T ss_pred CCCCCHHHHh
Confidence 5555554433
No 406
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.10 E-value=0.02 Score=51.83 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHhhhhCC
Q 007263 37 IAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 37 IvVvG~~ssGKSSllnal~G~ 57 (610)
|+++|+.+||||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999975
No 407
>PRK13695 putative NTPase; Provisional
Probab=94.96 E-value=0.075 Score=50.06 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+++|.+++|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998765
No 408
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.95 E-value=0.019 Score=51.56 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~ 58 (610)
-.++|+|..|+|||||+++|.|..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 368999999999999999999974
No 409
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.90 E-value=0.011 Score=60.55 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|+++|..|+||||++..|.+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37889999999999999999875
No 410
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.89 E-value=0.014 Score=54.27 Aligned_cols=22 Identities=32% Similarity=0.780 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
+|+|+|.+|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5999999999999999999865
No 411
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.87 E-value=0.056 Score=40.48 Aligned_cols=52 Identities=23% Similarity=0.445 Sum_probs=30.6
Q ss_pred HHHHHHHhcC-CCeEEEEeecCCC-ccccHHHHHHHHHhCCC--CCceEEEeeccc
Q 007263 163 ENMVRSYIEK-PNCIILAISPANQ-DLATSDAIKISREVDPT--GERTFGVLTKID 214 (610)
Q Consensus 163 ~~~~~~yi~~-~d~iil~v~~a~~-d~~~~~~l~l~~~~~~~--~~rti~VltK~D 214 (610)
+..+-..+++ +++|+++++++.. +..-.+-+.+.+++.+. +.|.+.|+||+|
T Consensus 3 E~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 3 EMQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hHHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4445555555 6678888887765 34445556666666653 699999999998
No 412
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.78 E-value=0.022 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.759 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
|.|.|||..|||||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999864
No 413
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.71 E-value=0.024 Score=54.13 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
-.++++|.+||||||++++|+|.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999986
No 414
>PRK01889 GTPase RsgA; Reviewed
Probab=94.69 E-value=0.03 Score=59.25 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=43.6
Q ss_pred hcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhh
Q 007263 170 IEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADIN 249 (610)
Q Consensus 170 i~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~ 249 (610)
+.+.|.+++|+.. +.++.....-+++..+...+.+.++|+||+|+.++..+..+.+... ..+...+.+++.+..+++
T Consensus 110 aANvD~vliV~s~-~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFIVCSL-NHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEEEEec-CCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCccHH
Confidence 4678887776654 4566544444454444455778899999999986522222222221 223344555555544443
No 415
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.2 Score=51.25 Aligned_cols=26 Identities=38% Similarity=0.680 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~ 58 (610)
+.-.|.|+|.||+|||+|++-|.+-.
T Consensus 187 df~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccC
Confidence 45579999999999999999999863
No 416
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.62 E-value=0.13 Score=48.83 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=26.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p 71 (610)
--+++|+.||||||||..++. .+|.++|.++-.-
T Consensus 29 iTs~IGPNGAGKSTLLS~~sR--L~~~d~G~i~i~g 62 (252)
T COG4604 29 ITSIIGPNGAGKSTLLSMMSR--LLKKDSGEITIDG 62 (252)
T ss_pred eeEEECCCCccHHHHHHHHHH--hccccCceEEEee
Confidence 357899999999999988875 4677878665544
No 417
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.61 E-value=0.028 Score=51.92 Aligned_cols=31 Identities=39% Similarity=0.721 Sum_probs=25.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T 68 (610)
.+.+||..+||||||+++|+++ ++-.+|.+|
T Consensus 34 VLgiVGESGSGKtTLL~~is~r--l~p~~G~v~ 64 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR--LTPDAGTVT 64 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc--cCCCCCeEE
Confidence 6889999999999999999997 344556554
No 418
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.56 E-value=0.17 Score=41.66 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHhhhhCC
Q 007263 37 IAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 37 IvVvG~~ssGKSSllnal~G~ 57 (610)
|++.|..|+||||+...|...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999999999753
No 419
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.55 E-value=0.034 Score=52.55 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+++|..+|||||+++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999985
No 420
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.49 E-value=0.029 Score=55.14 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=24.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~ 63 (610)
-.|+++|+.|+||||||+.|.|..- |.+
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~-p~~ 57 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEK-PTS 57 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCC
Confidence 3799999999999999999999863 444
No 421
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.48 E-value=0.032 Score=53.36 Aligned_cols=31 Identities=35% Similarity=0.710 Sum_probs=25.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T 68 (610)
..+|+|+.|+||||||.+|+|. +.|.+ |.|+
T Consensus 29 v~ailGPNGAGKSTlLk~LsGe-l~p~~-G~v~ 59 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGE-LSPDS-GEVT 59 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCc-cCCCC-CeEe
Confidence 7899999999999999999997 45554 4443
No 422
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.42 E-value=0.033 Score=53.90 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=27.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC-CCccccccccccc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKD-FLPRGSGIVTRRP 71 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~-~lP~~~~~~Tr~p 71 (610)
-.|+++|.+|||||||++.|.+.. -+......+||.|
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 368999999999999999999852 1223334566666
No 423
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.39 E-value=0.03 Score=52.62 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=27.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p 71 (610)
-+++.|+.|+||||++.+|....-|--+...+||.|
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 478999999999999999997653334445677766
No 424
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.36 E-value=0.032 Score=52.99 Aligned_cols=26 Identities=42% Similarity=0.566 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhh---CCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIV---GKD 58 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~---G~~ 58 (610)
+.|.|+|+|.+||||||+.+.|. |..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 57899999999999999999998 654
No 425
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.27 E-value=0.038 Score=50.38 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++|+|..|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 56899999999999999999973
No 426
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.26 E-value=0.16 Score=60.72 Aligned_cols=81 Identities=22% Similarity=0.222 Sum_probs=46.0
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHH---HHHHHH--hcCCCeEEEEeecCCCcccc-HHHHHHH-------HHh---C
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIE---NMVRSY--IEKPNCIILAISPANQDLAT-SDAIKIS-------REV---D 200 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~---~~~~~y--i~~~d~iil~v~~a~~d~~~-~~~l~l~-------~~~---~ 200 (610)
+..+|||-|-..... ++++....... .+.++| -+.-|-||++++.+.--... .+....+ .++ -
T Consensus 175 eaVlIDtaGry~~q~-s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL 253 (1188)
T COG3523 175 EAVLIDTAGRYITQD-SADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL 253 (1188)
T ss_pred ceEEEcCCcceeccc-CcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999655443 23333333333 344555 44568899998754211000 1111111 222 2
Q ss_pred CCCCceEEEeecccCCCC
Q 007263 201 PTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 201 ~~~~rti~VltK~D~~~~ 218 (610)
...-|+.+++||.|++.-
T Consensus 254 ~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 254 HARLPVYLVLTKADLLPG 271 (1188)
T ss_pred ccCCceEEEEeccccccc
Confidence 346899999999999863
No 427
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=94.24 E-value=0.05 Score=56.23 Aligned_cols=66 Identities=20% Similarity=0.347 Sum_probs=41.9
Q ss_pred cEEEeCCCCCccccCCCCCchHHHHHHHHHHHh-cCCCeEEEEeecCCCcc--ccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 138 LTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI-EKPNCIILAISPANQDL--ATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 138 ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi-~~~d~iil~v~~a~~d~--~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
+.||||-|--.+ ++..++..+ ++.|..+|+| +|+... .+.+.+-++-. .+.|+|+|+||+|
T Consensus 203 VsfVDtvGHEpw------------LrTtirGL~gqk~dYglLvV-aAddG~~~~tkEHLgi~~a---~~lPviVvvTK~D 266 (527)
T COG5258 203 VSFVDTVGHEPW------------LRTTIRGLLGQKVDYGLLVV-AADDGVTKMTKEHLGIALA---MELPVIVVVTKID 266 (527)
T ss_pred EEEEecCCccHH------------HHHHHHHHhccccceEEEEE-EccCCcchhhhHhhhhhhh---hcCCEEEEEEecc
Confidence 679999996443 233334443 4688888877 444332 23344444433 3689999999999
Q ss_pred CCCCC
Q 007263 215 LMDKG 219 (610)
Q Consensus 215 ~~~~~ 219 (610)
+.++.
T Consensus 267 ~~~dd 271 (527)
T COG5258 267 MVPDD 271 (527)
T ss_pred cCcHH
Confidence 98764
No 428
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.22 E-value=0.039 Score=53.67 Aligned_cols=29 Identities=34% Similarity=0.410 Sum_probs=23.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 66 (610)
.++++|+.|||||||++.|+|.. |..+|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~ 57 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL--GPTSGE 57 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCce
Confidence 58899999999999999999973 434453
No 429
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.19 E-value=0.14 Score=58.23 Aligned_cols=28 Identities=39% Similarity=0.640 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 66 (610)
.+++||+.|||||||++.|+|.. |. +|.
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~--p~-~G~ 405 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL--PY-QGS 405 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC-CcE
Confidence 68999999999999999999973 75 343
No 430
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.04 Score=54.61 Aligned_cols=22 Identities=45% Similarity=0.726 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|..|||||||++.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 431
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.13 E-value=0.04 Score=53.92 Aligned_cols=29 Identities=38% Similarity=0.450 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 66 (610)
.++|+|+.|||||||++.|+|. +|-.+|.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~ 60 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL--DRPTSGE 60 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC--cCCCcee
Confidence 6899999999999999999997 3434443
No 432
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.13 E-value=0.42 Score=46.12 Aligned_cols=20 Identities=20% Similarity=0.498 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHhhhh
Q 007263 36 AIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~ 55 (610)
.++++|+.++|||||+..|.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999998
No 433
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.11 E-value=0.041 Score=53.53 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=24.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 66 (610)
..++++|..|+|||||++.|.|. +|..+|.
T Consensus 26 g~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~ 55 (211)
T cd03264 26 GMYGLLGPNGAGKTTLMRILATL--TPPSSGT 55 (211)
T ss_pred CcEEEECCCCCCHHHHHHHHhCC--CCCCccE
Confidence 48999999999999999999996 3444443
No 434
>PRK00098 GTPase RsgA; Reviewed
Probab=94.10 E-value=0.052 Score=56.00 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=46.2
Q ss_pred hcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhh
Q 007263 170 IEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADIN 249 (610)
Q Consensus 170 i~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~ 249 (610)
+.++|.+++|++..+.++......+++..+...+.+.++|+||+|+.+.......... ....++..++.+++.+..+++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~-~~~~~g~~v~~vSA~~g~gi~ 156 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLA-LYRAIGYDVLELSAKEGEGLD 156 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHH-HHHHCCCeEEEEeCCCCccHH
Confidence 5899999999886554433332223333344567899999999999743221111111 111233456666666655554
Q ss_pred cc
Q 007263 250 KN 251 (610)
Q Consensus 250 ~~ 251 (610)
.+
T Consensus 157 ~L 158 (298)
T PRK00098 157 EL 158 (298)
T ss_pred HH
Confidence 43
No 435
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.10 E-value=0.043 Score=52.50 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|+|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 436
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.09 E-value=0.038 Score=57.89 Aligned_cols=32 Identities=19% Similarity=0.480 Sum_probs=25.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T 68 (610)
..|+|+|.+||||||++++|++. +|.+..++|
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 46999999999999999999985 465544443
No 437
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.07 E-value=0.044 Score=53.17 Aligned_cols=22 Identities=32% Similarity=0.720 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
-++++|..|+||||+|++|+|.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl 52 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGL 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 438
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=94.05 E-value=0.094 Score=48.34 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=27.4
Q ss_pred CeEEEEeecCCCccccHHHHHHH-HHhCCCCCceEEEeecccCCCC
Q 007263 174 NCIILAISPANQDLATSDAIKIS-REVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 174 d~iil~v~~a~~d~~~~~~l~l~-~~~~~~~~rti~VltK~D~~~~ 218 (610)
|.+++++++.... ......+. ..+...+.|.|+|+||+|+.++
T Consensus 1 Dvvl~VvD~~~p~--~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~ 44 (155)
T cd01849 1 DVILEVLDARDPL--GTRSPDIERVLIKEKGKKLILVLNKADLVPK 44 (155)
T ss_pred CEEEEEEeccCCc--cccCHHHHHHHHhcCCCCEEEEEechhcCCH
Confidence 5678888754322 22222233 3445567999999999999754
No 439
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=94.04 E-value=0.18 Score=43.88 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
+|+++|+.++||||++..+....+
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~ 25 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPF 25 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCc
Confidence 689999999999999999965543
No 440
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.99 E-value=0.045 Score=53.71 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|..|||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 441
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.98 E-value=0.056 Score=51.61 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=25.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC-CCccccccccccc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKD-FLPRGSGIVTRRP 71 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~-~lP~~~~~~Tr~p 71 (610)
.-|+++|++|||||||++.|+... -+......+||.|
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~ 42 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP 42 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC
Confidence 358999999999999999998752 0112224455555
No 442
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.94 E-value=0.047 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|..|||||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 443
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.93 E-value=0.047 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 444
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.92 E-value=0.048 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~ 58 (610)
..++++|+.|||||||++.|.|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 478999999999999999999973
No 445
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=93.90 E-value=0.15 Score=52.04 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 163 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 163 ~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
...+.+.++.+|.|++++++... . +++...+.+.+. +.+.|+|+||+|+.++
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p-~-~~~~~~i~~~l~--~kp~IiVlNK~DL~~~ 63 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIP-L-SSRNPMIDEIRG--NKPRLIVLNKADLADP 63 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCC-C-CCCChhHHHHHC--CCCEEEEEEccccCCH
Confidence 34468889999999999986432 1 222223334342 5899999999999754
No 446
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.89 E-value=0.051 Score=52.67 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 66 (610)
.++++|+.|||||||++.|+|.. |-.+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~ 56 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI--KESSGS 56 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceE
Confidence 68999999999999999999963 334443
No 447
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.89 E-value=0.048 Score=53.30 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..++++|+.|||||||++.|.|.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999997
No 448
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.88 E-value=0.052 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|..|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 449
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.88 E-value=0.049 Score=53.36 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|..|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 450
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.86 E-value=0.051 Score=52.95 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|..|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 451
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.86 E-value=0.43 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.+++||+.||||||+++.|.|.
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~ 378 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRL 378 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999999985
No 452
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.85 E-value=0.055 Score=51.40 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~ 58 (610)
..++++|..|+|||||++.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999973
No 453
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.84 E-value=0.05 Score=52.92 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999996
No 454
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.83 E-value=0.055 Score=51.19 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|+|||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999996
No 455
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.79 E-value=0.055 Score=51.99 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|..|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999973
No 456
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.78 E-value=0.056 Score=53.52 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 66 (610)
.++++|..|||||||++.|+|.- |-.+|.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~ 61 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE--RPTSGS 61 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCce
Confidence 68999999999999999999973 444443
No 457
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.74 E-value=0.051 Score=53.81 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|.|.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999997
No 458
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.72 E-value=0.054 Score=56.06 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~ 67 (610)
.++++|..|||||||++.|.|. +|-.+|.+
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl--~~p~~G~i 64 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNAL--LLPDTGTI 64 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCC--CCCCCcEE
Confidence 7999999999999999999996 34444543
No 459
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.71 E-value=0.053 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|..|||||||++.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999996
No 460
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.71 E-value=0.053 Score=54.03 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|.|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 461
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.70 E-value=0.054 Score=53.10 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|..|||||||++.|+|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 462
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.70 E-value=0.056 Score=52.62 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 66 (610)
.++++|..|||||||++.|+|.. |..+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~ 56 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE--EPDSGT 56 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCce
Confidence 68999999999999999999963 444443
No 463
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.70 E-value=0.055 Score=53.77 Aligned_cols=31 Identities=35% Similarity=0.616 Sum_probs=25.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T 68 (610)
.++|||+.|||||||+.+|+|. ++-..|.++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl--l~p~~G~i~ 62 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL--LKPSSGEIK 62 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCcceEE
Confidence 6899999999999999999995 344445544
No 464
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.70 E-value=0.055 Score=52.94 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|..|||||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 465
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=93.68 E-value=0.46 Score=55.31 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.|+|||..|||||||++.|+|.-
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999973
No 466
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=93.68 E-value=0.32 Score=53.40 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=49.1
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
..++.+|||||-.+.... |.+.++--|..++++++.. ...+......++....+.|-|..+||+|
T Consensus 103 ~~~iNiIDTPGHvDFT~E-------------VeRALrVlDGaVlvl~aV~--GVqsQt~tV~rQ~~ry~vP~i~FiNKmD 167 (721)
T KOG0465|consen 103 DYRINIIDTPGHVDFTFE-------------VERALRVLDGAVLVLDAVA--GVESQTETVWRQMKRYNVPRICFINKMD 167 (721)
T ss_pred cceeEEecCCCceeEEEE-------------ehhhhhhccCeEEEEEccc--ceehhhHHHHHHHHhcCCCeEEEEehhh
Confidence 567999999998886544 4555666665555554322 2344556677778888999999999999
Q ss_pred CCCC
Q 007263 215 LMDK 218 (610)
Q Consensus 215 ~~~~ 218 (610)
.+..
T Consensus 168 RmGa 171 (721)
T KOG0465|consen 168 RMGA 171 (721)
T ss_pred hcCC
Confidence 9854
No 467
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.67 E-value=0.06 Score=51.97 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~ 58 (610)
-..++++|..|+|||||++.|.|..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999999973
No 468
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.65 E-value=0.059 Score=52.66 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~ 67 (610)
.++++|..|+|||||++.|.|.. |..+|.+
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i 68 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL--HVESGQI 68 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCeeE
Confidence 68899999999999999999963 4444543
No 469
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.64 E-value=0.06 Score=53.08 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=23.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 66 (610)
.++|+|+.|+|||||++.|+|.. |-..|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 59 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY--DPQKGQ 59 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCCE
Confidence 58999999999999999999973 444453
No 470
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.62 E-value=0.065 Score=49.50 Aligned_cols=32 Identities=38% Similarity=0.505 Sum_probs=25.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T 68 (610)
..++++|+.++|||||+++|.|.- |...|.++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~i~ 57 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGEIL 57 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccEEE
Confidence 478899999999999999999973 44445443
No 471
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.62 E-value=0.061 Score=52.06 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++|+|..|+|||||++.|.|..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999973
No 472
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.61 E-value=0.062 Score=50.11 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~ 58 (610)
..++++|+.|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999974
No 473
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.60 E-value=0.062 Score=42.24 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHhhhhCC
Q 007263 37 IAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 37 IvVvG~~ssGKSSllnal~G~ 57 (610)
|++.|.++|||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999864
No 474
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.59 E-value=0.065 Score=51.81 Aligned_cols=30 Identities=33% Similarity=0.544 Sum_probs=24.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 66 (610)
-.++++|..|+|||||++.|.|.. |-.+|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 56 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLS--PPLAGR 56 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCcE
Confidence 379999999999999999999963 444453
No 475
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.59 E-value=0.06 Score=53.35 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=23.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 66 (610)
.++++|..|||||||++.|.|. +|..+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~ 56 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF--LRPTSGS 56 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC--CCCCCce
Confidence 6899999999999999999996 3434443
No 476
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.59 E-value=0.062 Score=52.16 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~ 67 (610)
.++|+|..|+|||||+++|+|.. |..+|.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i 65 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL--EAEEGKI 65 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCCeE
Confidence 68999999999999999999963 4444543
No 477
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.58 E-value=0.056 Score=47.31 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+|+|.++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 478
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.55 E-value=0.061 Score=53.40 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~ 67 (610)
.++++|..|||||||++.|.|.. |-.+|.+
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~i 60 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY--DPTSGEI 60 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC--CCCCCEE
Confidence 68999999999999999999973 4444543
No 479
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.54 E-value=0.063 Score=52.45 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~ 67 (610)
.++++|+.|||||||++.|+|.. |-.+|.+
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i 44 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD--APDEGDF 44 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--cCCCCCE
Confidence 68899999999999999999973 3344544
No 480
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.54 E-value=0.067 Score=50.33 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|..|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 481
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=93.54 E-value=0.51 Score=54.66 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.+++||+.|||||||++.|+|..
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999973
No 482
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=93.53 E-value=0.27 Score=53.73 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
++-+-.|+|..++|||.+|++++|+.+
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~ 450 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSM 450 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhcccc
Confidence 556889999999999999999999975
No 483
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.53 E-value=0.06 Score=53.52 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|..|||||||++.|+|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 484
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.49 E-value=0.062 Score=52.18 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++|+|..|+|||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999996
No 485
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.46 E-value=0.064 Score=52.27 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999999973
No 486
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.45 E-value=0.068 Score=53.81 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=25.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T 68 (610)
-.++|+|..|||||||++.|+|. ++-.+|.++
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl--~~p~~G~I~ 58 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGK--LKPNLGKFD 58 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--cCCCCceEe
Confidence 37999999999999999999997 344445443
No 487
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.45 E-value=0.095 Score=47.48 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=35.1
Q ss_pred HHHHHhcCCCeEEEEeecCCCcccc-HHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 165 MVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 165 ~~~~yi~~~d~iil~v~~a~~d~~~-~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
.+++.++++|.+++++++....... ....+++.... .+.+.++|+||+|+.++
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~-~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD-PRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc-CCCcEEEEEechhcCCH
Confidence 4678899999999998865432211 12233333322 37899999999999753
No 488
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.45 E-value=0.068 Score=53.27 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=24.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~ 67 (610)
.++++|..|||||||++.|+|. +|-.+|.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i 60 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRL--IDPTEGSI 60 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCcEE
Confidence 6889999999999999999996 34344543
No 489
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.44 E-value=0.064 Score=52.23 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|..|||||||++.|+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 490
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.41 E-value=0.075 Score=49.72 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++|+|..++|||||++.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999997
No 491
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.41 E-value=0.066 Score=52.69 Aligned_cols=29 Identities=34% Similarity=0.507 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 66 (610)
.++++|..|||||||++.|+|.. |-.+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 61 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL--KPTSGS 61 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCce
Confidence 79999999999999999999973 434443
No 492
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.40 E-value=0.12 Score=53.18 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
-.|+|.|..||||+|+||+|++.
T Consensus 174 ~NILisGGTGSGKTTlLNal~~~ 196 (355)
T COG4962 174 CNILISGGTGSGKTTLLNALSGF 196 (355)
T ss_pred eeEEEeCCCCCCHHHHHHHHHhc
Confidence 37999999999999999999996
No 493
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.39 E-value=0.07 Score=53.11 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|.|.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 494
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.39 E-value=0.071 Score=52.25 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 495
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.37 E-value=0.069 Score=53.21 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~ 58 (610)
-.++++|..|+|||||++.|.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999973
No 496
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=93.36 E-value=0.16 Score=47.70 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 162 IENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 162 i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
+.+.++..++++|.|++++++.... . .....+.... .+.+.++|+||+|+.++
T Consensus 9 ~~~~~~~~i~~aD~il~v~D~~~~~-~-~~~~~i~~~~--~~k~~ilVlNK~Dl~~~ 61 (171)
T cd01856 9 ALRQIKEKLKLVDLVIEVRDARIPL-S-SRNPLLEKIL--GNKPRIIVLNKADLADP 61 (171)
T ss_pred HHHHHHHHHhhCCEEEEEeeccCcc-C-cCChhhHhHh--cCCCEEEEEehhhcCCh
Confidence 3445788999999999998865321 1 1112233333 25789999999999643
No 497
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.35 E-value=0.07 Score=52.90 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 66 (610)
.++|+|+.|||||||++.|.|.. |-.+|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~ 57 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY--DVSSGS 57 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCCE
Confidence 68999999999999999999973 444453
No 498
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.35 E-value=0.073 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|..|+|||||++.|.|..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999963
No 499
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.32 E-value=0.069 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++|+|..|||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 500
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.29 E-value=0.075 Score=50.01 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|+|||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999999973
Done!