Query 007263
Match_columns 610
No_of_seqs 350 out of 3078
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 21:22:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 1.7E-94 5.7E-99 810.4 62.6 593 1-609 26-768 (772)
2 3szr_A Interferon-induced GTP- 100.0 2.3E-85 7.9E-90 734.8 54.3 552 32-607 43-607 (608)
3 3t34_A Dynamin-related protein 100.0 9.3E-52 3.2E-56 436.6 32.6 331 1-331 1-331 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 1.3E-46 4.4E-51 396.0 39.3 338 1-349 6-345 (353)
5 1jwy_B Dynamin A GTPase domain 100.0 7.6E-40 2.6E-44 339.1 30.7 310 2-320 1-315 (315)
6 3ljb_A Interferon-induced GTP- 100.0 7.5E-40 2.6E-44 323.9 23.5 251 328-582 3-271 (271)
7 2aka_B Dynamin-1; fusion prote 100.0 2E-37 7E-42 318.3 34.9 298 1-309 1-298 (299)
8 2j69_A Bacterial dynamin-like 99.8 1.7E-17 5.7E-22 188.3 27.9 172 33-218 68-245 (695)
9 3iev_A GTP-binding protein ERA 99.7 5.7E-18 2E-22 174.1 11.8 243 33-336 9-256 (308)
10 1wf3_A GTP-binding protein; GT 99.7 3E-18 1E-22 175.4 7.8 238 33-336 6-246 (301)
11 1ega_A Protein (GTP-binding pr 99.6 5E-17 1.7E-21 166.5 0.4 236 33-336 7-247 (301)
12 3iby_A Ferrous iron transport 99.5 8.4E-15 2.9E-19 146.3 7.6 156 34-255 1-161 (256)
13 2xtp_A GTPase IMAP family memb 99.5 2.4E-14 8.1E-19 143.3 10.2 172 33-263 21-210 (260)
14 3lxw_A GTPase IMAP family memb 99.5 8.4E-14 2.9E-18 138.4 12.3 171 33-261 20-208 (247)
15 4dhe_A Probable GTP-binding pr 99.5 5.2E-14 1.8E-18 137.0 10.2 129 33-218 28-159 (223)
16 1xzp_A Probable tRNA modificat 99.5 1.8E-13 6E-18 148.3 14.8 159 34-258 243-402 (482)
17 1kao_A RAP2A; GTP-binding prot 99.5 1.4E-13 4.9E-18 126.6 11.1 107 137-256 52-161 (167)
18 3gee_A MNME, tRNA modification 99.5 3.5E-14 1.2E-18 153.7 7.9 159 35-257 234-394 (476)
19 3geh_A MNME, tRNA modification 99.5 2.1E-14 7.3E-19 154.8 6.0 157 35-258 225-381 (462)
20 1svi_A GTP-binding protein YSX 99.5 1.9E-13 6.6E-18 129.8 11.1 126 33-219 22-150 (195)
21 2qu8_A Putative nucleolar GTP- 99.5 1.8E-13 6.2E-18 134.0 11.1 136 25-219 20-158 (228)
22 1mky_A Probable GTP-binding pr 99.4 1.2E-13 4.2E-18 148.9 9.7 163 34-261 1-166 (439)
23 3lxx_A GTPase IMAP family memb 99.4 1.4E-13 4.8E-18 135.9 9.3 130 33-219 28-161 (239)
24 2qpt_A EH domain-containing pr 99.4 2.1E-13 7.1E-18 150.5 11.3 166 32-218 63-233 (550)
25 2dyk_A GTP-binding protein; GT 99.4 1.8E-13 6.2E-18 125.5 9.1 152 34-253 1-154 (161)
26 3pqc_A Probable GTP-binding pr 99.4 5.6E-13 1.9E-17 126.3 12.6 161 33-255 22-188 (195)
27 3tkl_A RAS-related protein RAB 99.4 2.8E-13 9.4E-18 128.8 10.2 159 33-257 15-175 (196)
28 4dcu_A GTP-binding protein ENG 99.4 7.2E-13 2.5E-17 143.6 14.5 130 33-220 194-323 (456)
29 2g6b_A RAS-related protein RAB 99.4 2.5E-13 8.4E-18 127.1 9.1 121 33-218 9-131 (180)
30 1u8z_A RAS-related protein RAL 99.4 3E-13 1E-17 124.5 9.3 118 34-218 4-124 (168)
31 3t5d_A Septin-7; GTP-binding p 99.4 3.1E-13 1.1E-17 136.4 10.1 136 35-218 9-159 (274)
32 2a9k_A RAS-related protein RAL 99.4 4.9E-13 1.7E-17 125.7 10.7 158 33-257 17-177 (187)
33 2gj8_A MNME, tRNA modification 99.4 7.7E-13 2.6E-17 123.6 11.8 126 34-218 4-130 (172)
34 3q72_A GTP-binding protein RAD 99.4 2.6E-13 8.8E-18 125.2 8.4 153 34-255 2-158 (166)
35 2fg5_A RAB-22B, RAS-related pr 99.4 1.2E-13 4E-18 131.4 6.2 108 136-256 72-181 (192)
36 1g16_A RAS-related protein SEC 99.4 1.9E-13 6.4E-18 126.5 7.4 155 34-255 3-159 (170)
37 2hjg_A GTP-binding protein ENG 99.4 8.3E-13 2.8E-17 142.2 13.5 165 33-255 174-343 (436)
38 3bc1_A RAS-related protein RAB 99.4 4.5E-13 1.5E-17 126.7 10.2 69 137-218 71-142 (195)
39 1z0j_A RAB-22, RAS-related pro 99.4 2.8E-13 9.6E-18 125.3 8.4 153 34-252 6-160 (170)
40 2qtf_A Protein HFLX, GTP-bindi 99.4 1E-12 3.5E-17 137.6 13.7 176 33-268 178-361 (364)
41 3i8s_A Ferrous iron transport 99.4 7.1E-14 2.4E-18 141.1 4.4 155 34-254 3-162 (274)
42 1zbd_A Rabphilin-3A; G protein 99.4 6.8E-13 2.3E-17 127.0 11.0 120 33-218 7-128 (203)
43 2oil_A CATX-8, RAS-related pro 99.4 4.2E-13 1.4E-17 127.4 9.3 120 33-218 24-145 (193)
44 1z08_A RAS-related protein RAB 99.4 1.8E-13 6E-18 126.8 6.5 156 33-254 5-162 (170)
45 2il1_A RAB12; G-protein, GDP, 99.4 4.3E-13 1.5E-17 127.6 9.3 120 33-218 25-146 (192)
46 3clv_A RAB5 protein, putative; 99.4 5.1E-13 1.7E-17 127.3 9.9 105 136-255 93-198 (208)
47 2lkc_A Translation initiation 99.4 4.4E-13 1.5E-17 125.2 9.2 156 32-257 6-167 (178)
48 3a1s_A Iron(II) transport prot 99.4 2.4E-13 8.1E-18 136.0 7.8 153 34-256 5-162 (258)
49 1c1y_A RAS-related protein RAP 99.4 3.3E-13 1.1E-17 124.4 8.1 104 137-253 52-159 (167)
50 2hjg_A GTP-binding protein ENG 99.4 8.9E-13 3.1E-17 142.0 12.5 158 34-257 3-161 (436)
51 2bme_A RAB4A, RAS-related prot 99.4 5.9E-13 2E-17 125.4 9.6 156 33-255 9-167 (186)
52 2bov_A RAla, RAS-related prote 99.4 7.1E-13 2.4E-17 126.9 10.3 158 33-257 13-173 (206)
53 1z0f_A RAB14, member RAS oncog 99.4 5.9E-13 2E-17 124.2 9.5 155 33-253 14-170 (179)
54 4djt_A GTP-binding nuclear pro 99.4 1.9E-13 6.6E-18 132.5 6.1 112 136-260 61-174 (218)
55 1upt_A ARL1, ADP-ribosylation 99.4 7.5E-13 2.6E-17 122.6 9.8 116 33-219 6-124 (171)
56 4dsu_A GTPase KRAS, isoform 2B 99.4 6.6E-13 2.3E-17 125.1 9.4 156 35-258 5-163 (189)
57 2fn4_A P23, RAS-related protei 99.4 3.8E-13 1.3E-17 125.7 7.7 157 33-256 8-167 (181)
58 1zj6_A ADP-ribosylation factor 99.4 1.8E-12 6E-17 122.5 12.3 152 33-256 15-173 (187)
59 3cph_A RAS-related protein SEC 99.4 5.4E-13 1.8E-17 128.6 8.9 161 33-260 19-181 (213)
60 4dcu_A GTP-binding protein ENG 99.4 1.3E-12 4.3E-17 141.6 12.8 157 32-254 21-178 (456)
61 3b1v_A Ferrous iron uptake tra 99.4 3.1E-13 1.1E-17 136.0 7.4 151 34-255 3-158 (272)
62 1ek0_A Protein (GTP-binding pr 99.4 5.2E-13 1.8E-17 123.3 8.3 68 137-218 53-123 (170)
63 2nzj_A GTP-binding protein REM 99.4 7.8E-13 2.7E-17 123.0 9.2 157 33-255 3-163 (175)
64 2ce2_X GTPase HRAS; signaling 99.4 1.1E-12 3.8E-17 120.3 10.0 104 137-254 52-158 (166)
65 2gf9_A RAS-related protein RAB 99.4 5.6E-13 1.9E-17 126.2 8.1 119 34-218 22-142 (189)
66 2ew1_A RAS-related protein RAB 99.4 8.6E-13 2.9E-17 126.7 9.5 157 33-255 25-183 (201)
67 2erx_A GTP-binding protein DI- 99.4 6.8E-13 2.3E-17 122.8 8.5 104 137-253 52-159 (172)
68 2y8e_A RAB-protein 6, GH09086P 99.4 4.2E-13 1.4E-17 125.2 6.9 103 137-252 64-168 (179)
69 3kkq_A RAS-related protein M-R 99.4 9.3E-13 3.2E-17 123.7 9.2 156 33-255 17-176 (183)
70 2bcg_Y Protein YP2, GTP-bindin 99.4 7.9E-13 2.7E-17 127.0 8.9 120 33-218 7-128 (206)
71 2efe_B Small GTP-binding prote 99.4 1.2E-12 4E-17 122.6 9.8 155 33-253 11-167 (181)
72 3tw8_B RAS-related protein RAB 99.4 2.2E-13 7.4E-18 127.4 4.7 119 33-218 8-128 (181)
73 2hup_A RAS-related protein RAB 99.4 1E-12 3.5E-17 126.0 9.6 108 136-256 78-188 (201)
74 4bas_A ADP-ribosylation factor 99.4 2E-12 6.9E-17 123.0 11.1 155 33-257 16-185 (199)
75 1r8s_A ADP-ribosylation factor 99.4 2.4E-12 8.1E-17 118.4 11.1 69 136-218 44-116 (164)
76 2a5j_A RAS-related protein RAB 99.4 7.8E-13 2.7E-17 125.5 7.9 118 34-217 21-140 (191)
77 3dz8_A RAS-related protein RAB 99.4 6.3E-13 2.2E-17 126.1 7.2 155 33-253 22-178 (191)
78 2h57_A ADP-ribosylation factor 99.4 1.3E-12 4.5E-17 123.7 9.4 154 33-255 20-181 (190)
79 1z06_A RAS-related protein RAB 99.4 9.9E-13 3.4E-17 124.5 8.5 147 33-245 19-169 (189)
80 1z2a_A RAS-related protein RAB 99.4 5E-13 1.7E-17 123.3 6.2 118 34-218 5-124 (168)
81 3t5g_A GTP-binding protein RHE 99.4 6.3E-13 2.1E-17 124.7 6.9 159 33-258 5-166 (181)
82 1wms_A RAB-9, RAB9, RAS-relate 99.4 1.7E-12 5.9E-17 121.0 9.9 103 137-255 57-168 (177)
83 2cxx_A Probable GTP-binding pr 99.4 2.4E-12 8.4E-17 121.4 10.8 123 34-218 1-137 (190)
84 3k53_A Ferrous iron transport 99.4 3.1E-13 1.1E-17 136.1 4.9 154 33-256 2-161 (271)
85 3q85_A GTP-binding protein REM 99.3 1.3E-12 4.5E-17 120.8 8.5 108 136-255 51-161 (169)
86 3oes_A GTPase rhebl1; small GT 99.3 5.1E-13 1.8E-17 127.9 5.7 158 33-258 23-184 (201)
87 2hxs_A RAB-26, RAS-related pro 99.3 2.7E-13 9.3E-18 126.6 3.6 158 33-255 5-167 (178)
88 2f7s_A C25KG, RAS-related prot 99.3 1.7E-12 5.9E-17 125.6 9.4 106 137-256 85-194 (217)
89 1zd9_A ADP-ribosylation factor 99.3 3.7E-12 1.3E-16 120.5 11.3 114 34-218 22-139 (188)
90 1r2q_A RAS-related protein RAB 99.3 1.7E-12 5.7E-17 119.9 8.6 69 137-218 56-126 (170)
91 2p5s_A RAS and EF-hand domain 99.3 1.4E-12 4.8E-17 124.7 8.2 118 33-216 27-146 (199)
92 1ksh_A ARF-like protein 2; sma 99.3 2.2E-12 7.4E-17 121.6 9.3 154 33-259 17-178 (186)
93 1ky3_A GTP-binding protein YPT 99.3 1.2E-12 4.2E-17 122.3 7.4 155 33-255 7-172 (182)
94 2o52_A RAS-related protein RAB 99.3 8.9E-13 3E-17 126.3 6.4 159 33-258 24-185 (200)
95 1vg8_A RAS-related protein RAB 99.3 1.1E-12 3.8E-17 125.8 7.1 157 33-255 7-169 (207)
96 2wji_A Ferrous iron transport 99.3 8.6E-13 2.9E-17 122.2 6.0 148 35-252 4-156 (165)
97 2fu5_C RAS-related protein RAB 99.3 6.3E-13 2.2E-17 124.9 5.0 70 136-218 57-128 (183)
98 1x3s_A RAS-related protein RAB 99.3 2.1E-12 7.2E-17 122.4 8.4 159 34-260 15-177 (195)
99 1moz_A ARL1, ADP-ribosylation 99.3 3.4E-12 1.2E-16 119.7 9.6 152 33-256 17-175 (183)
100 2yc2_C IFT27, small RAB-relate 99.3 8.4E-13 2.9E-17 126.5 5.5 69 136-217 73-146 (208)
101 3con_A GTPase NRAS; structural 99.3 4.5E-12 1.6E-16 119.8 10.3 152 35-254 22-176 (190)
102 2h17_A ADP-ribosylation factor 99.3 3.2E-12 1.1E-16 120.1 9.1 114 33-218 20-137 (181)
103 2atv_A RERG, RAS-like estrogen 99.3 3.5E-12 1.2E-16 121.4 9.3 118 33-218 27-147 (196)
104 1fzq_A ADP-ribosylation factor 99.3 7.8E-12 2.7E-16 117.7 11.2 115 33-219 15-133 (181)
105 3qq5_A Small GTP-binding prote 99.3 3.3E-12 1.1E-16 136.0 9.6 162 33-259 33-194 (423)
106 2x77_A ADP-ribosylation factor 99.3 2.3E-12 7.9E-17 121.8 7.4 115 33-219 21-139 (189)
107 1lnz_A SPO0B-associated GTP-bi 99.3 4.8E-13 1.6E-17 138.8 2.0 163 34-258 158-327 (342)
108 3llu_A RAS-related GTP-binding 99.3 1.3E-11 4.5E-16 117.6 11.4 120 33-218 19-144 (196)
109 2q3h_A RAS homolog gene family 99.3 3.6E-12 1.2E-16 121.8 7.3 119 32-218 18-139 (201)
110 3t1o_A Gliding protein MGLA; G 99.3 4E-12 1.4E-16 120.5 7.5 101 137-254 75-185 (198)
111 2fh5_B SR-beta, signal recogni 99.3 8.6E-12 2.9E-16 120.4 10.0 119 33-219 6-131 (214)
112 2gf0_A GTP-binding protein DI- 99.3 5.6E-12 1.9E-16 119.9 8.5 104 137-254 57-164 (199)
113 2gco_A H9, RHO-related GTP-bin 99.3 2.3E-12 7.8E-17 123.4 5.6 68 137-218 74-144 (201)
114 2ged_A SR-beta, signal recogni 99.3 3.1E-11 1.1E-15 114.3 13.2 139 4-219 26-172 (193)
115 2b6h_A ADP-ribosylation factor 99.3 5.3E-12 1.8E-16 120.1 7.8 114 33-218 28-145 (192)
116 3cpj_B GTP-binding protein YPT 99.3 2.2E-12 7.6E-17 125.7 5.1 119 33-217 12-132 (223)
117 1f6b_A SAR1; gtpases, N-termin 99.3 1.2E-11 4.2E-16 118.1 10.3 113 33-217 24-140 (198)
118 1mh1_A RAC1; GTP-binding, GTPa 99.3 1.7E-12 5.8E-17 122.0 4.1 68 137-218 54-124 (186)
119 3cbq_A GTP-binding protein REM 99.3 1.5E-11 5.1E-16 117.3 10.6 107 137-255 73-182 (195)
120 2fv8_A H6, RHO-related GTP-bin 99.3 2.2E-12 7.7E-17 124.1 4.6 68 137-218 74-144 (207)
121 3reg_A RHO-like small GTPase; 99.3 2.2E-12 7.6E-17 122.6 4.5 154 34-255 23-182 (194)
122 2atx_A Small GTP binding prote 99.3 4.2E-12 1.5E-16 120.5 6.5 117 34-218 18-137 (194)
123 3l0i_B RAS-related protein RAB 99.3 3.2E-13 1.1E-17 129.1 -1.5 150 33-252 32-187 (199)
124 2wjg_A FEOB, ferrous iron tran 99.3 2.3E-12 7.8E-17 121.6 4.3 154 33-256 6-164 (188)
125 1m2o_B GTP-binding protein SAR 99.2 1.6E-11 5.6E-16 116.4 9.9 113 33-217 22-138 (190)
126 3c5c_A RAS-like protein 12; GD 99.2 6.3E-12 2.2E-16 118.9 6.7 152 35-255 22-180 (187)
127 2j1l_A RHO-related GTP-binding 99.2 4.5E-12 1.5E-16 122.8 5.6 117 34-218 34-153 (214)
128 4dkx_A RAS-related protein RAB 99.2 8.7E-12 3E-16 121.1 7.1 105 136-253 62-168 (216)
129 1h65_A Chloroplast outer envel 99.2 2.9E-11 1E-15 121.6 11.0 125 33-219 38-170 (270)
130 1mky_A Probable GTP-binding pr 99.2 4E-11 1.4E-15 129.2 12.6 130 33-219 179-308 (439)
131 3gj0_A GTP-binding nuclear pro 99.2 2.8E-12 9.7E-17 124.7 3.3 110 136-261 64-175 (221)
132 2e87_A Hypothetical protein PH 99.2 9.4E-11 3.2E-15 122.8 14.5 125 33-218 166-295 (357)
133 3th5_A RAS-related C3 botulinu 98.8 1.2E-12 4.2E-17 125.5 0.0 70 136-218 78-149 (204)
134 3bwd_D RAC-like GTP-binding pr 99.2 1.6E-12 5.5E-17 121.7 0.4 69 136-218 56-127 (182)
135 3q3j_B RHO-related GTP-binding 99.2 6.2E-12 2.1E-16 121.8 4.5 118 33-218 26-146 (214)
136 2j0v_A RAC-like GTP-binding pr 99.2 3.3E-12 1.1E-16 123.2 2.5 117 34-218 9-128 (212)
137 4gzl_A RAS-related C3 botulinu 99.2 3.2E-12 1.1E-16 122.8 2.3 69 137-219 79-150 (204)
138 1m7b_A RND3/RHOE small GTP-bin 99.2 1.3E-11 4.5E-16 116.2 5.5 117 33-217 6-125 (184)
139 2iwr_A Centaurin gamma 1; ANK 99.2 4.5E-11 1.5E-15 111.6 8.9 109 34-216 7-121 (178)
140 3def_A T7I23.11 protein; chlor 99.2 9.9E-11 3.4E-15 117.1 12.0 125 33-218 35-166 (262)
141 3o47_A ADP-ribosylation factor 99.2 3.1E-11 1.1E-15 124.9 8.5 149 36-255 167-321 (329)
142 1gwn_A RHO-related GTP-binding 99.2 2.1E-11 7.1E-16 117.3 6.0 116 34-217 28-146 (205)
143 1wxq_A GTP-binding protein; st 99.2 7.4E-12 2.5E-16 132.6 3.1 37 36-72 2-38 (397)
144 3r7w_A Gtpase1, GTP-binding pr 99.2 5.2E-11 1.8E-15 122.0 9.0 122 35-217 4-129 (307)
145 1nrj_B SR-beta, signal recogni 99.1 1.2E-10 4.3E-15 112.5 10.7 115 32-219 10-136 (218)
146 3ihw_A Centg3; RAS, centaurin, 99.1 1.3E-10 4.4E-15 109.6 9.6 101 137-256 68-175 (184)
147 2g3y_A GTP-binding protein GEM 99.1 1E-10 3.5E-15 113.1 8.8 107 137-255 88-197 (211)
148 3lvq_E ARF-GAP with SH3 domain 99.1 2.7E-10 9.2E-15 124.7 12.6 150 35-256 323-479 (497)
149 3izy_P Translation initiation 99.1 1.5E-11 5.3E-16 134.2 2.2 117 33-218 3-119 (537)
150 3dpu_A RAB family protein; roc 99.1 4.1E-10 1.4E-14 124.4 13.1 109 136-259 98-206 (535)
151 3izq_1 HBS1P, elongation facto 99.1 1.7E-10 6E-15 128.6 9.6 148 33-217 166-319 (611)
152 3sjy_A Translation initiation 99.1 3.6E-10 1.2E-14 120.3 10.6 68 136-218 75-144 (403)
153 3p26_A Elongation factor 1 alp 99.1 9.4E-11 3.2E-15 127.7 6.1 103 135-252 110-229 (483)
154 4a9a_A Ribosome-interacting GT 99.1 1.9E-10 6.5E-15 120.1 7.8 122 33-216 71-195 (376)
155 2wkq_A NPH1-1, RAS-related C3 99.0 1.7E-10 5.8E-15 119.0 6.9 118 33-218 154-274 (332)
156 1wb1_A Translation elongation 99.0 2.2E-10 7.4E-15 124.6 7.9 159 34-257 19-185 (482)
157 2cjw_A GTP-binding protein GEM 99.0 1.4E-10 4.8E-15 110.2 5.5 69 137-217 57-128 (192)
158 3j2k_7 ERF3, eukaryotic polype 99.0 2.6E-10 8.8E-15 122.6 7.9 67 135-217 94-169 (439)
159 2zej_A Dardarin, leucine-rich 99.0 7.4E-11 2.5E-15 111.1 3.2 68 136-217 56-126 (184)
160 3tr5_A RF-3, peptide chain rel 99.0 7.1E-10 2.4E-14 121.5 10.2 138 33-218 12-149 (528)
161 2qag_A Septin-2, protein NEDD5 99.0 3.5E-10 1.2E-14 118.4 7.3 80 137-218 96-189 (361)
162 2ywe_A GTP-binding protein LEP 99.0 6.2E-10 2.1E-14 123.2 9.5 134 33-218 5-140 (600)
163 2f9l_A RAB11B, member RAS onco 99.0 4.7E-10 1.6E-14 107.0 7.2 119 33-217 4-124 (199)
164 2www_A Methylmalonic aciduria 99.0 1.1E-09 3.8E-14 114.0 9.3 142 135-301 166-316 (349)
165 3cb4_D GTP-binding protein LEP 99.0 6E-10 2E-14 123.5 7.5 134 33-218 3-138 (599)
166 1kk1_A EIF2gamma; initiation o 98.9 2.9E-09 9.9E-14 113.6 12.1 68 136-218 83-152 (410)
167 3p32_A Probable GTPase RV1496/ 98.9 2.1E-09 7.2E-14 112.3 10.6 104 135-260 171-283 (355)
168 1zo1_I IF2, translation initia 98.9 2.8E-10 9.5E-15 123.3 3.4 114 33-217 3-117 (501)
169 1g7s_A Translation initiation 98.9 6.1E-10 2.1E-14 123.5 6.1 67 136-217 70-136 (594)
170 1pui_A ENGB, probable GTP-bind 98.9 3.4E-09 1.2E-13 101.6 10.6 78 137-219 73-153 (210)
171 1zun_B Sulfate adenylate trans 98.9 3.3E-09 1.1E-13 113.9 11.6 68 135-218 103-172 (434)
172 1s0u_A EIF-2-gamma, translatio 98.9 4.1E-09 1.4E-13 112.3 12.1 69 136-219 81-151 (408)
173 2h5e_A Peptide chain release f 98.9 3.6E-09 1.2E-13 116.0 11.5 69 135-218 81-149 (529)
174 2elf_A Protein translation elo 98.9 3.3E-09 1.1E-13 111.2 10.2 62 136-215 60-125 (370)
175 1f60_A Elongation factor EEF1A 98.9 8E-10 2.7E-14 119.5 5.0 144 33-217 6-159 (458)
176 1oix_A RAS-related protein RAB 98.9 2.3E-09 7.8E-14 101.6 6.8 118 34-217 29-148 (191)
177 2c78_A Elongation factor TU-A; 98.8 1.3E-08 4.6E-13 108.2 11.7 68 135-217 74-142 (405)
178 2xex_A Elongation factor G; GT 98.8 4E-09 1.4E-13 119.6 7.3 69 135-218 74-142 (693)
179 3mca_A HBS1, elongation factor 98.8 2.6E-10 9.1E-15 126.8 -2.6 66 136-217 255-329 (592)
180 1jny_A EF-1-alpha, elongation 98.8 1.1E-08 3.6E-13 110.0 9.1 68 135-218 83-159 (435)
181 2qag_C Septin-7; cell cycle, c 98.7 3.8E-08 1.3E-12 104.5 11.9 81 136-218 88-182 (418)
182 3c5h_A Glucocorticoid receptor 98.7 4.9E-09 1.7E-13 104.3 4.5 81 172-254 162-248 (255)
183 1dar_A EF-G, elongation factor 98.7 1.3E-08 4.4E-13 115.3 8.4 69 135-218 76-144 (691)
184 1udx_A The GTP-binding protein 98.7 2.5E-08 8.5E-13 105.8 10.0 159 34-255 157-319 (416)
185 2rdo_7 EF-G, elongation factor 98.7 5.7E-08 1.9E-12 110.2 13.4 68 136-218 82-149 (704)
186 1r5b_A Eukaryotic peptide chai 98.7 1.5E-08 5.2E-13 109.7 7.3 66 136-217 121-195 (467)
187 1n0u_A EF-2, elongation factor 98.7 1.8E-08 6.2E-13 116.5 8.2 66 136-216 98-163 (842)
188 3ec1_A YQEH GTPase; atnos1, at 98.7 3.6E-09 1.2E-13 111.1 1.9 75 137-218 213-289 (369)
189 2p67_A LAO/AO transport system 98.7 7.9E-08 2.7E-12 99.8 11.9 61 135-217 148-208 (341)
190 1d2e_A Elongation factor TU (E 98.7 1.8E-08 6.1E-13 106.9 7.1 67 135-217 65-133 (397)
191 2qnr_A Septin-2, protein NEDD5 98.7 2.4E-08 8.1E-13 101.8 7.6 177 35-259 19-212 (301)
192 2qag_B Septin-6, protein NEDD5 98.7 4.4E-08 1.5E-12 103.6 9.6 82 136-219 95-192 (427)
193 3r7w_B Gtpase2, GTP-binding pr 98.6 1.5E-07 5.1E-12 96.0 11.8 71 136-218 46-121 (331)
194 1jal_A YCHF protein; nucleotid 98.6 1.8E-08 6.2E-13 104.6 4.6 37 35-71 3-39 (363)
195 2qm8_A GTPase/ATPase; G protei 98.6 2E-07 6.9E-12 96.4 12.0 25 33-57 54-78 (337)
196 3h2y_A GTPase family protein; 98.6 2E-08 6.8E-13 105.3 4.4 76 137-219 212-289 (368)
197 3avx_A Elongation factor TS, e 98.6 3.8E-08 1.3E-12 114.4 7.1 67 135-217 358-426 (1289)
198 3vqt_A RF-3, peptide chain rel 98.6 3E-08 1E-12 109.1 6.0 135 33-217 30-166 (548)
199 2dy1_A Elongation factor G; tr 98.6 6.3E-08 2.2E-12 109.3 7.3 132 33-216 8-139 (665)
200 3sop_A Neuronal-specific septi 98.5 2.7E-07 9.3E-12 92.3 9.4 82 136-219 60-156 (270)
201 2ohf_A Protein OLA1, GTP-bindi 98.5 1.1E-07 3.9E-12 99.5 6.8 108 33-184 21-128 (396)
202 4fn5_A EF-G 1, elongation fact 98.4 2.3E-07 7.8E-12 105.6 7.8 136 33-217 12-151 (709)
203 1yrb_A ATP(GTP)binding protein 98.4 6.5E-07 2.2E-11 88.8 10.1 23 33-55 13-35 (262)
204 2j37_W Signal recognition part 98.4 4.2E-07 1.4E-11 98.5 9.2 79 135-225 183-262 (504)
205 2dby_A GTP-binding protein; GD 98.4 3.8E-07 1.3E-11 95.1 8.5 110 35-184 2-111 (368)
206 3j25_A Tetracycline resistance 98.4 1E-07 3.5E-12 107.0 3.4 133 34-218 2-134 (638)
207 3dm5_A SRP54, signal recogniti 98.4 1.6E-06 5.3E-11 92.2 11.4 81 136-227 183-263 (443)
208 1tq4_A IIGP1, interferon-induc 98.3 4.7E-06 1.6E-10 88.1 12.2 121 33-216 68-188 (413)
209 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 2.3E-06 8E-11 89.8 8.1 107 33-183 19-126 (392)
210 1f5n_A Interferon-induced guan 98.2 3.5E-06 1.2E-10 92.8 8.9 27 33-59 37-63 (592)
211 1puj_A YLQF, conserved hypothe 98.1 2.4E-06 8.2E-11 86.0 5.9 27 33-59 119-145 (282)
212 2wsm_A Hydrogenase expression/ 98.1 6.7E-07 2.3E-11 86.2 1.4 25 33-57 29-53 (221)
213 3kl4_A SRP54, signal recogniti 98.1 8E-06 2.8E-10 86.7 9.7 83 135-226 179-261 (433)
214 2v3c_C SRP54, signal recogniti 98.0 1.4E-05 4.6E-10 85.3 8.9 79 135-225 180-260 (432)
215 3cnl_A YLQF, putative uncharac 97.8 9.4E-06 3.2E-10 80.7 4.3 25 35-59 100-124 (262)
216 1rj9_A FTSY, signal recognitio 97.8 3.9E-05 1.3E-09 77.9 8.3 86 137-227 186-271 (304)
217 2hf9_A Probable hydrogenase ni 97.8 1.4E-05 4.8E-10 77.1 4.8 26 33-58 37-62 (226)
218 1j8m_F SRP54, signal recogniti 97.7 0.00016 5.3E-09 73.2 11.0 82 135-226 180-262 (297)
219 3q5d_A Atlastin-1; G protein, 97.7 6.7E-05 2.3E-09 79.8 8.5 25 33-57 66-90 (447)
220 3e70_C DPA, signal recognition 97.7 0.00018 6.2E-09 73.7 11.0 80 136-226 212-291 (328)
221 2yhs_A FTSY, cell division pro 97.7 8.3E-05 2.8E-09 79.7 8.6 83 136-227 376-462 (503)
222 2xxa_A Signal recognition part 97.6 6.2E-05 2.1E-09 80.2 7.1 78 136-225 184-262 (433)
223 1vma_A Cell division protein F 97.5 4.1E-05 1.4E-09 77.7 4.0 83 135-227 186-273 (306)
224 1zu4_A FTSY; GTPase, signal re 97.4 0.0011 3.8E-08 67.6 12.3 83 135-227 191-278 (320)
225 2ffh_A Protein (FFH); SRP54, s 97.2 0.00064 2.2E-08 71.9 8.8 80 135-225 180-259 (425)
226 2og2_A Putative signal recogni 97.1 0.00089 3E-08 69.3 8.6 85 137-226 242-326 (359)
227 2px0_A Flagellar biosynthesis 97.1 0.00044 1.5E-08 69.8 6.1 80 135-227 182-263 (296)
228 3b9q_A Chloroplast SRP recepto 97.0 0.00093 3.2E-08 67.6 7.3 85 137-226 185-269 (302)
229 1ls1_A Signal recognition part 96.8 0.0024 8.2E-08 64.3 8.1 81 135-226 180-260 (295)
230 1t9h_A YLOQ, probable GTPase E 96.4 0.0013 4.3E-08 66.7 2.6 24 35-58 174-197 (307)
231 1u0l_A Probable GTPase ENGC; p 96.2 0.0013 4.6E-08 66.5 1.9 99 137-252 64-164 (301)
232 1cip_A Protein (guanine nucleo 96.0 0.0028 9.5E-08 65.5 2.9 69 135-216 192-273 (353)
233 1zcb_A G alpha I/13; GTP-bindi 95.8 0.0088 3E-07 62.0 5.8 69 135-216 200-281 (362)
234 2yv5_A YJEQ protein; hydrolase 95.6 0.014 4.7E-07 59.0 6.1 21 36-57 167-187 (302)
235 4ido_A Atlastin-1; GTPase, GTP 95.4 0.01 3.6E-07 62.7 4.7 22 34-55 67-88 (457)
236 2yv5_A YJEQ protein; hydrolase 95.1 0.0053 1.8E-07 62.0 1.3 54 165-218 72-125 (302)
237 4dzz_A Plasmid partitioning pr 95.0 0.038 1.3E-06 51.6 6.9 66 136-216 76-143 (206)
238 3ney_A 55 kDa erythrocyte memb 95.0 0.0093 3.2E-07 56.1 2.3 23 35-57 20-42 (197)
239 1puj_A YLQF, conserved hypothe 94.8 0.042 1.4E-06 54.7 6.7 52 163-218 14-65 (282)
240 1ex7_A Guanylate kinase; subst 94.7 0.012 4E-07 54.9 2.2 35 37-71 4-40 (186)
241 3tif_A Uncharacterized ABC tra 94.5 0.017 5.8E-07 56.0 3.1 23 36-58 33-55 (235)
242 1u0l_A Probable GTPase ENGC; p 94.5 0.033 1.1E-06 56.1 5.3 24 35-58 170-193 (301)
243 1kgd_A CASK, peripheral plasma 94.4 0.015 5.1E-07 53.7 2.3 23 35-57 6-28 (180)
244 1lvg_A Guanylate kinase, GMP k 94.4 0.015 5.2E-07 54.6 2.3 23 35-57 5-27 (198)
245 4g1u_C Hemin import ATP-bindin 94.4 0.022 7.5E-07 56.3 3.5 22 36-57 39-60 (266)
246 2rcn_A Probable GTPase ENGC; Y 94.4 0.025 8.5E-07 58.3 4.0 23 36-58 217-239 (358)
247 1ye8_A Protein THEP1, hypothet 94.3 0.017 6E-07 53.3 2.5 22 36-57 2-23 (178)
248 1mv5_A LMRA, multidrug resista 94.3 0.024 8.4E-07 55.1 3.7 23 36-58 30-52 (243)
249 3tau_A Guanylate kinase, GMP k 94.3 0.022 7.5E-07 53.9 3.2 23 35-57 9-31 (208)
250 1g6h_A High-affinity branched- 94.3 0.021 7.3E-07 56.1 3.1 23 36-58 35-57 (257)
251 2pcj_A ABC transporter, lipopr 94.3 0.02 6.8E-07 55.1 2.8 23 36-58 32-54 (224)
252 2pt7_A CAG-ALFA; ATPase, prote 94.2 0.021 7.1E-07 58.4 3.0 29 36-66 173-201 (330)
253 2gza_A Type IV secretion syste 94.1 0.023 7.9E-07 58.8 3.2 30 35-66 176-205 (361)
254 1sgw_A Putative ABC transporte 94.1 0.024 8.1E-07 54.1 3.1 22 36-57 37-58 (214)
255 1znw_A Guanylate kinase, GMP k 94.1 0.019 6.4E-07 54.3 2.4 22 36-57 22-43 (207)
256 3gfo_A Cobalt import ATP-bindi 94.1 0.024 8.1E-07 56.3 3.1 22 36-57 36-57 (275)
257 1b0u_A Histidine permease; ABC 94.1 0.024 8.3E-07 55.9 3.1 22 36-57 34-55 (262)
258 1zp6_A Hypothetical protein AT 94.1 0.024 8.3E-07 52.4 2.9 22 36-57 11-32 (191)
259 4fid_A G protein alpha subunit 94.0 0.053 1.8E-06 55.4 5.6 71 134-217 159-242 (340)
260 2pze_A Cystic fibrosis transme 94.0 0.026 8.9E-07 54.4 3.1 22 36-57 36-57 (229)
261 3tr0_A Guanylate kinase, GMP k 93.9 0.021 7.3E-07 53.4 2.3 22 36-57 9-30 (205)
262 2oap_1 GSPE-2, type II secreti 93.9 0.024 8.2E-07 61.5 3.0 31 36-68 262-292 (511)
263 1s96_A Guanylate kinase, GMP k 93.9 0.022 7.6E-07 54.5 2.3 23 35-57 17-39 (219)
264 2olj_A Amino acid ABC transpor 93.9 0.028 9.7E-07 55.4 3.1 23 36-58 52-74 (263)
265 3c8u_A Fructokinase; YP_612366 93.8 0.021 7.1E-07 54.0 2.0 23 35-57 23-45 (208)
266 1ji0_A ABC transporter; ATP bi 93.8 0.029 1E-06 54.5 3.1 23 36-58 34-56 (240)
267 2d2e_A SUFC protein; ABC-ATPas 93.8 0.028 9.4E-07 55.0 2.9 22 36-57 31-52 (250)
268 1azs_C GS-alpha; complex (lyas 93.8 0.044 1.5E-06 57.3 4.5 68 136-216 217-297 (402)
269 2ixe_A Antigen peptide transpo 93.8 0.03 1E-06 55.4 3.1 23 36-58 47-69 (271)
270 3a00_A Guanylate kinase, GMP k 93.7 0.025 8.4E-07 52.5 2.3 22 36-57 3-24 (186)
271 1vpl_A ABC transporter, ATP-bi 93.7 0.031 1E-06 54.9 3.1 23 36-58 43-65 (256)
272 1np6_A Molybdopterin-guanine d 93.7 0.03 1E-06 51.5 2.7 25 33-57 5-29 (174)
273 1z6g_A Guanylate kinase; struc 93.7 0.026 8.9E-07 53.9 2.4 22 36-57 25-46 (218)
274 2yz2_A Putative ABC transporte 93.6 0.033 1.1E-06 55.1 3.1 23 36-58 35-57 (266)
275 2nq2_C Hypothetical ABC transp 93.6 0.032 1.1E-06 54.7 3.0 31 36-68 33-63 (253)
276 2cbz_A Multidrug resistance-as 93.6 0.036 1.2E-06 53.8 3.2 22 36-57 33-54 (237)
277 2onk_A Molybdate/tungstate ABC 93.5 0.035 1.2E-06 54.0 3.0 24 35-58 25-48 (240)
278 2ihy_A ABC transporter, ATP-bi 93.5 0.035 1.2E-06 55.2 3.1 23 36-58 49-71 (279)
279 2qor_A Guanylate kinase; phosp 93.4 0.026 8.7E-07 53.2 1.8 24 34-57 12-35 (204)
280 2zu0_C Probable ATP-dependent 93.3 0.036 1.2E-06 54.7 2.9 22 36-57 48-69 (267)
281 4gp7_A Metallophosphoesterase; 93.3 0.04 1.4E-06 50.3 2.9 21 36-56 11-31 (171)
282 2ff7_A Alpha-hemolysin translo 93.3 0.039 1.4E-06 53.8 3.1 23 36-58 37-59 (247)
283 2qi9_C Vitamin B12 import ATP- 93.3 0.041 1.4E-06 53.7 3.1 23 36-58 28-50 (249)
284 1htw_A HI0065; nucleotide-bind 93.2 0.035 1.2E-06 50.2 2.4 26 36-63 35-60 (158)
285 3nh6_A ATP-binding cassette SU 93.2 0.03 1E-06 56.5 2.0 22 36-57 82-103 (306)
286 1t9h_A YLOQ, probable GTPase E 93.2 0.037 1.3E-06 55.8 2.6 54 166-219 80-133 (307)
287 2eyu_A Twitching motility prot 93.1 0.036 1.2E-06 54.6 2.4 23 35-57 26-48 (261)
288 3asz_A Uridine kinase; cytidin 93.1 0.034 1.2E-06 52.4 2.1 22 36-57 8-29 (211)
289 2ghi_A Transport protein; mult 93.1 0.045 1.5E-06 53.9 3.1 23 36-58 48-70 (260)
290 1kag_A SKI, shikimate kinase I 92.9 0.04 1.4E-06 50.0 2.3 23 35-57 5-27 (173)
291 3ohm_A Guanine nucleotide-bind 92.9 0.058 2E-06 54.9 3.7 70 135-217 166-248 (327)
292 2j41_A Guanylate kinase; GMP, 92.9 0.043 1.5E-06 51.3 2.5 23 35-57 7-29 (207)
293 3h2y_A GTPase family protein; 92.8 0.075 2.6E-06 55.1 4.4 92 160-255 57-154 (368)
294 2v9p_A Replication protein E1; 92.8 0.043 1.5E-06 55.2 2.5 22 36-57 128-149 (305)
295 3end_A Light-independent proto 92.7 0.25 8.5E-06 49.5 8.2 67 135-215 156-225 (307)
296 2f1r_A Molybdopterin-guanine d 92.7 0.024 8.1E-07 52.1 0.4 23 35-57 3-25 (171)
297 3ec2_A DNA replication protein 92.6 0.076 2.6E-06 48.6 3.8 23 35-57 39-61 (180)
298 3b85_A Phosphate starvation-in 92.5 0.037 1.3E-06 52.5 1.5 29 36-67 24-52 (208)
299 2bbw_A Adenylate kinase 4, AK4 92.5 0.07 2.4E-06 51.7 3.5 24 35-58 28-54 (246)
300 4eun_A Thermoresistant glucoki 92.4 0.05 1.7E-06 51.0 2.3 23 35-57 30-52 (200)
301 2bdt_A BH3686; alpha-beta prot 92.4 0.052 1.8E-06 50.2 2.4 21 36-56 4-24 (189)
302 2pjz_A Hypothetical protein ST 92.3 0.073 2.5E-06 52.4 3.4 26 36-63 32-57 (263)
303 3lw7_A Adenylate kinase relate 92.2 0.076 2.6E-06 47.8 3.1 20 35-54 2-21 (179)
304 3jvv_A Twitching mobility prot 92.2 0.054 1.9E-06 55.8 2.3 22 36-57 125-146 (356)
305 2xtz_A Guanine nucleotide-bind 92.1 0.069 2.4E-06 55.0 3.1 69 135-216 182-263 (354)
306 3aez_A Pantothenate kinase; tr 92.0 0.058 2E-06 54.6 2.3 22 36-57 92-113 (312)
307 1knq_A Gluconate kinase; ALFA/ 92.0 0.062 2.1E-06 48.9 2.3 23 35-57 9-31 (175)
308 2bbs_A Cystic fibrosis transme 92.0 0.069 2.4E-06 53.4 2.8 22 36-57 66-87 (290)
309 4a74_A DNA repair and recombin 92.0 0.059 2E-06 51.2 2.3 30 36-65 27-56 (231)
310 2i3b_A HCR-ntpase, human cance 91.9 0.063 2.1E-06 50.1 2.3 22 36-57 3-24 (189)
311 3lnc_A Guanylate kinase, GMP k 91.9 0.05 1.7E-06 52.2 1.6 22 36-57 29-51 (231)
312 3kta_A Chromosome segregation 91.9 0.06 2E-06 49.4 2.1 24 34-57 26-49 (182)
313 1xjc_A MOBB protein homolog; s 91.8 0.098 3.4E-06 47.8 3.3 25 33-57 3-27 (169)
314 3kb2_A SPBC2 prophage-derived 91.8 0.091 3.1E-06 47.3 3.2 22 35-56 2-23 (173)
315 4e22_A Cytidylate kinase; P-lo 91.7 0.069 2.4E-06 52.1 2.4 26 34-59 27-55 (252)
316 3ec1_A YQEH GTPase; atnos1, at 91.7 0.081 2.8E-06 54.9 3.0 54 162-219 61-114 (369)
317 1cke_A CK, MSSA, protein (cyti 91.6 0.079 2.7E-06 50.4 2.6 23 35-57 6-28 (227)
318 1p9r_A General secretion pathw 91.4 0.06 2.1E-06 56.7 1.8 23 35-57 168-190 (418)
319 3uie_A Adenylyl-sulfate kinase 91.4 0.078 2.7E-06 49.6 2.4 23 35-57 26-48 (200)
320 3l82_B F-box only protein 4; T 91.3 0.37 1.3E-05 45.5 6.7 95 160-255 113-217 (227)
321 2jeo_A Uridine-cytidine kinase 91.3 0.08 2.7E-06 51.3 2.4 22 36-57 27-48 (245)
322 1odf_A YGR205W, hypothetical 3 91.2 0.19 6.5E-06 50.1 5.1 24 34-57 31-54 (290)
323 3tui_C Methionine import ATP-b 91.2 0.097 3.3E-06 54.0 3.0 23 36-58 56-78 (366)
324 1z47_A CYSA, putative ABC-tran 91.2 0.099 3.4E-06 53.8 3.1 23 36-58 43-65 (355)
325 1jjv_A Dephospho-COA kinase; P 91.1 0.11 3.7E-06 48.7 3.0 21 36-56 4-24 (206)
326 3fvq_A Fe(3+) IONS import ATP- 91.1 0.096 3.3E-06 53.9 2.8 23 36-58 32-54 (359)
327 2if2_A Dephospho-COA kinase; a 91.0 0.087 3E-06 49.2 2.3 21 36-56 3-23 (204)
328 2ewv_A Twitching motility prot 91.0 0.084 2.9E-06 54.8 2.3 22 36-57 138-159 (372)
329 2qt1_A Nicotinamide riboside k 91.0 0.11 3.8E-06 48.7 3.0 22 36-57 23-44 (207)
330 2yyz_A Sugar ABC transporter, 91.0 0.11 3.7E-06 53.6 3.1 23 36-58 31-53 (359)
331 2vp4_A Deoxynucleoside kinase; 90.9 0.096 3.3E-06 50.3 2.5 22 36-57 22-43 (230)
332 2it1_A 362AA long hypothetical 90.9 0.11 3.7E-06 53.6 3.0 23 36-58 31-53 (362)
333 1nij_A Hypothetical protein YJ 90.9 0.064 2.2E-06 54.4 1.2 26 33-58 3-28 (318)
334 3t61_A Gluconokinase; PSI-biol 90.8 0.099 3.4E-06 48.8 2.5 22 35-56 19-40 (202)
335 2jaq_A Deoxyguanosine kinase; 90.8 0.13 4.3E-06 47.8 3.2 22 36-57 2-23 (205)
336 3rlf_A Maltose/maltodextrin im 90.8 0.11 3.9E-06 53.8 3.0 23 36-58 31-53 (381)
337 1lw7_A Transcriptional regulat 90.8 0.079 2.7E-06 54.8 1.9 23 35-57 171-193 (365)
338 1f2t_A RAD50 ABC-ATPase; DNA d 90.8 0.11 3.9E-06 46.2 2.7 21 35-55 24-44 (149)
339 1g29_1 MALK, maltose transport 90.8 0.11 3.9E-06 53.7 3.1 23 36-58 31-53 (372)
340 1ly1_A Polynucleotide kinase; 90.7 0.12 4.2E-06 46.8 2.9 21 36-56 4-24 (181)
341 1v43_A Sugar-binding transport 90.6 0.12 4.2E-06 53.5 3.0 23 36-58 39-61 (372)
342 1sq5_A Pantothenate kinase; P- 90.5 0.093 3.2E-06 52.9 2.1 22 36-57 82-103 (308)
343 1rz3_A Hypothetical protein rb 90.4 0.1 3.5E-06 48.8 2.1 23 35-57 23-45 (201)
344 2kjq_A DNAA-related protein; s 90.1 0.094 3.2E-06 46.7 1.6 24 34-57 36-59 (149)
345 1qhx_A CPT, protein (chloramph 90.1 0.15 5.1E-06 46.4 2.9 22 36-57 5-26 (178)
346 2ehv_A Hypothetical protein PH 90.1 0.12 4E-06 49.8 2.3 21 36-56 32-52 (251)
347 2npi_A Protein CLP1; CLP1-PCF1 90.0 0.11 3.9E-06 55.3 2.4 26 33-58 137-162 (460)
348 3cnl_A YLQF, putative uncharac 89.9 0.092 3.1E-06 51.7 1.4 50 163-218 12-61 (262)
349 3d31_A Sulfate/molybdate ABC t 89.9 0.1 3.5E-06 53.6 1.8 23 36-58 28-50 (348)
350 3vaa_A Shikimate kinase, SK; s 89.8 0.14 4.8E-06 47.7 2.6 22 35-56 26-47 (199)
351 1nks_A Adenylate kinase; therm 89.8 0.15 5.1E-06 46.8 2.7 21 36-56 3-23 (194)
352 1kht_A Adenylate kinase; phosp 89.7 0.16 5.5E-06 46.5 2.9 22 35-56 4-25 (192)
353 3gd7_A Fusion complex of cysti 89.7 0.15 5.1E-06 53.2 2.8 22 36-57 49-70 (390)
354 1y63_A LMAJ004144AAA protein; 89.5 0.19 6.6E-06 46.2 3.2 24 34-57 10-33 (184)
355 3trf_A Shikimate kinase, SK; a 89.5 0.2 6.7E-06 45.9 3.2 22 34-55 5-26 (185)
356 3tqc_A Pantothenate kinase; bi 89.4 0.14 4.8E-06 51.9 2.3 22 36-57 94-115 (321)
357 2iyv_A Shikimate kinase, SK; t 89.3 0.19 6.3E-06 46.1 3.0 21 35-55 3-23 (184)
358 4a82_A Cystic fibrosis transme 89.3 0.16 5.5E-06 56.0 2.9 23 36-58 369-391 (578)
359 1oxx_K GLCV, glucose, ABC tran 89.2 0.1 3.5E-06 53.7 1.1 23 36-58 33-55 (353)
360 2rhm_A Putative kinase; P-loop 89.2 0.18 6.1E-06 46.4 2.7 22 35-56 6-27 (193)
361 3cm0_A Adenylate kinase; ATP-b 89.1 0.19 6.6E-06 45.9 2.9 20 36-55 6-25 (186)
362 1via_A Shikimate kinase; struc 89.1 0.2 6.9E-06 45.5 3.0 22 35-56 5-26 (175)
363 1jbk_A CLPB protein; beta barr 89.1 0.43 1.5E-05 43.1 5.3 24 34-57 43-66 (195)
364 3b5x_A Lipid A export ATP-bind 89.0 0.21 7.1E-06 55.1 3.6 22 36-57 371-392 (582)
365 3fb4_A Adenylate kinase; psych 89.0 0.21 7.1E-06 47.0 3.1 20 36-55 2-21 (216)
366 3qf4_A ABC transporter, ATP-bi 88.9 0.18 6.2E-06 55.6 3.0 22 36-57 371-392 (587)
367 3iij_A Coilin-interacting nucl 88.9 0.24 8.2E-06 45.1 3.3 23 33-55 10-32 (180)
368 1yqt_A RNAse L inhibitor; ATP- 88.8 0.27 9.1E-06 53.7 4.1 31 36-68 314-344 (538)
369 2plr_A DTMP kinase, probable t 88.8 0.21 7.1E-06 46.6 2.9 22 35-56 5-26 (213)
370 2v54_A DTMP kinase, thymidylat 88.7 0.21 7.2E-06 46.4 2.9 23 35-57 5-27 (204)
371 3qf7_A RAD50; ABC-ATPase, ATPa 88.7 0.2 6.8E-06 51.8 2.9 24 33-56 22-45 (365)
372 2z0h_A DTMP kinase, thymidylat 88.6 0.22 7.5E-06 45.9 2.9 21 36-56 2-22 (197)
373 3ozx_A RNAse L inhibitor; ATP 88.6 0.24 8.2E-06 54.0 3.6 30 36-67 296-325 (538)
374 2pez_A Bifunctional 3'-phospho 88.6 0.18 6.3E-06 45.9 2.3 23 35-57 6-28 (179)
375 3dl0_A Adenylate kinase; phosp 88.5 0.23 8E-06 46.7 3.1 21 36-56 2-22 (216)
376 2c95_A Adenylate kinase 1; tra 88.4 0.23 8E-06 45.7 3.0 23 34-56 9-31 (196)
377 3bk7_A ABC transporter ATP-bin 88.4 0.27 9.3E-06 54.3 4.0 31 36-68 384-414 (607)
378 1e6c_A Shikimate kinase; phosp 88.2 0.26 8.8E-06 44.4 3.0 22 35-56 3-24 (173)
379 3qf4_B Uncharacterized ABC tra 88.2 0.19 6.4E-06 55.7 2.4 23 36-58 383-405 (598)
380 1yqt_A RNAse L inhibitor; ATP- 88.1 0.24 8.4E-06 53.9 3.3 23 36-58 49-71 (538)
381 2yl4_A ATP-binding cassette SU 88.1 0.18 6.2E-06 55.7 2.3 22 36-57 372-393 (595)
382 2pbr_A DTMP kinase, thymidylat 88.1 0.25 8.5E-06 45.4 2.9 21 36-56 2-22 (195)
383 2x8a_A Nuclear valosin-contain 88.0 0.2 6.9E-06 49.5 2.3 21 37-57 47-67 (274)
384 2yvu_A Probable adenylyl-sulfa 88.0 0.21 7.2E-06 45.8 2.3 23 35-57 14-36 (186)
385 2ga8_A Hypothetical 39.9 kDa p 87.9 0.52 1.8E-05 48.2 5.3 47 1-57 1-47 (359)
386 2wwf_A Thymidilate kinase, put 87.9 0.24 8.1E-06 46.4 2.7 22 35-56 11-32 (212)
387 1ixz_A ATP-dependent metallopr 87.9 0.21 7.1E-06 48.4 2.3 21 37-57 52-72 (254)
388 1tev_A UMP-CMP kinase; ploop, 87.8 0.26 9E-06 45.2 2.9 21 36-56 5-25 (196)
389 2w0m_A SSO2452; RECA, SSPF, un 87.7 0.22 7.5E-06 47.1 2.4 22 36-57 25-46 (235)
390 1nn5_A Similar to deoxythymidy 87.7 0.25 8.5E-06 46.3 2.7 22 35-56 10-31 (215)
391 2pt5_A Shikimate kinase, SK; a 87.7 0.3 1E-05 43.8 3.1 21 36-56 2-22 (168)
392 1gtv_A TMK, thymidylate kinase 87.6 0.12 4.2E-06 48.4 0.5 22 36-57 2-23 (214)
393 3ozx_A RNAse L inhibitor; ATP 87.5 0.27 9.1E-06 53.6 3.1 23 36-58 27-49 (538)
394 2bwj_A Adenylate kinase 5; pho 87.5 0.29 9.8E-06 45.2 3.0 22 35-56 13-34 (199)
395 3qks_A DNA double-strand break 87.3 0.27 9.2E-06 46.2 2.7 22 34-55 23-44 (203)
396 3euj_A Chromosome partition pr 87.2 0.23 7.8E-06 53.2 2.3 23 35-57 30-52 (483)
397 3b60_A Lipid A export ATP-bind 87.2 0.27 9.2E-06 54.2 3.0 23 36-58 371-393 (582)
398 1cr0_A DNA primase/helicase; R 87.2 0.22 7.6E-06 49.5 2.1 22 36-57 37-58 (296)
399 3j16_B RLI1P; ribosome recycli 87.1 0.28 9.6E-06 54.2 3.0 23 36-58 105-127 (608)
400 1zd8_A GTP:AMP phosphotransfer 87.0 0.31 1.1E-05 46.3 3.0 23 34-56 7-29 (227)
401 3bk7_A ABC transporter ATP-bin 86.9 0.31 1.1E-05 53.9 3.3 23 36-58 119-141 (607)
402 3nwj_A ATSK2; P loop, shikimat 86.8 0.27 9.2E-06 47.9 2.4 23 34-56 48-70 (250)
403 1vht_A Dephospho-COA kinase; s 86.8 0.32 1.1E-05 45.9 2.8 22 35-56 5-26 (218)
404 1qf9_A UMP/CMP kinase, protein 86.7 0.31 1.1E-05 44.6 2.7 22 35-56 7-28 (194)
405 3a4m_A L-seryl-tRNA(SEC) kinas 86.7 0.31 1.1E-05 47.6 2.8 23 34-56 4-26 (260)
406 3ake_A Cytidylate kinase; CMP 86.7 0.31 1E-05 45.4 2.7 22 35-56 3-24 (208)
407 1e4v_A Adenylate kinase; trans 86.6 0.33 1.1E-05 45.7 2.9 21 36-56 2-22 (214)
408 2cdn_A Adenylate kinase; phosp 86.6 0.34 1.2E-05 45.0 2.9 24 33-56 18-42 (201)
409 1zak_A Adenylate kinase; ATP:A 86.4 0.34 1.2E-05 45.9 2.8 22 35-56 6-27 (222)
410 1aky_A Adenylate kinase; ATP:A 86.3 0.38 1.3E-05 45.4 3.2 22 35-56 5-26 (220)
411 1ukz_A Uridylate kinase; trans 86.3 0.36 1.2E-05 44.9 2.9 23 34-56 15-37 (203)
412 1iy2_A ATP-dependent metallopr 86.3 0.28 9.7E-06 48.3 2.3 21 37-57 76-96 (278)
413 1uf9_A TT1252 protein; P-loop, 86.3 0.33 1.1E-05 44.9 2.7 24 34-57 8-31 (203)
414 1in4_A RUVB, holliday junction 86.2 0.33 1.1E-05 49.4 2.8 24 34-57 51-74 (334)
415 1lv7_A FTSH; alpha/beta domain 86.2 0.57 2E-05 45.3 4.4 22 36-57 47-68 (257)
416 3l2o_B F-box only protein 4; s 86.1 1.3 4.5E-05 43.9 6.8 94 162-256 200-303 (312)
417 1gvn_B Zeta; postsegregational 86.0 0.32 1.1E-05 48.4 2.6 21 36-56 35-55 (287)
418 4b4t_L 26S protease subunit RP 86.0 3.1 0.00011 43.7 10.3 25 33-57 213-238 (437)
419 1svm_A Large T antigen; AAA+ f 85.9 0.3 1E-05 50.6 2.4 22 36-57 171-192 (377)
420 2p65_A Hypothetical protein PF 85.9 0.64 2.2E-05 41.9 4.4 24 34-57 43-66 (187)
421 2ze6_A Isopentenyl transferase 85.8 0.31 1.1E-05 47.4 2.3 21 36-56 3-23 (253)
422 2vli_A Antibiotic resistance p 85.8 0.26 9E-06 44.8 1.6 22 35-56 6-27 (183)
423 1m7g_A Adenylylsulfate kinase; 85.5 0.34 1.2E-05 45.5 2.4 23 35-57 26-48 (211)
424 2chg_A Replication factor C sm 85.4 0.78 2.7E-05 42.5 4.9 24 34-57 38-61 (226)
425 2xb4_A Adenylate kinase; ATP-b 85.4 0.44 1.5E-05 45.3 3.1 21 36-56 2-22 (223)
426 1zuh_A Shikimate kinase; alpha 85.4 0.44 1.5E-05 42.8 2.9 23 33-55 6-28 (168)
427 2grj_A Dephospho-COA kinase; T 85.3 0.43 1.5E-05 44.4 2.9 23 34-56 12-34 (192)
428 2cvh_A DNA repair and recombin 85.3 0.35 1.2E-05 45.3 2.4 21 36-56 22-42 (220)
429 2dhr_A FTSH; AAA+ protein, hex 85.2 0.79 2.7E-05 49.3 5.3 49 6-57 38-87 (499)
430 3thx_A DNA mismatch repair pro 85.1 3 0.0001 48.3 10.3 19 36-54 664-682 (934)
431 1tue_A Replication protein E1; 84.9 0.7 2.4E-05 43.4 4.1 21 36-56 60-80 (212)
432 1qhl_A Protein (cell division 84.9 0.079 2.7E-06 50.9 -2.5 23 36-58 29-51 (227)
433 3r20_A Cytidylate kinase; stru 84.8 0.36 1.2E-05 46.5 2.1 21 35-55 10-30 (233)
434 3j16_B RLI1P; ribosome recycli 84.7 0.44 1.5E-05 52.7 3.0 22 37-58 381-402 (608)
435 3qkt_A DNA double-strand break 84.7 0.41 1.4E-05 48.8 2.7 21 35-55 24-44 (339)
436 2obl_A ESCN; ATPase, hydrolase 84.7 0.37 1.3E-05 49.4 2.3 23 36-58 73-95 (347)
437 1n0w_A DNA repair protein RAD5 84.7 0.39 1.3E-05 45.8 2.3 26 36-61 26-51 (243)
438 1sxj_E Activator 1 40 kDa subu 84.6 0.41 1.4E-05 48.7 2.6 25 33-57 35-59 (354)
439 3tlx_A Adenylate kinase 2; str 84.5 0.51 1.7E-05 45.6 3.1 22 35-56 30-51 (243)
440 3k9g_A PF-32 protein; ssgcid, 84.3 4.9 0.00017 38.8 10.2 89 135-244 144-233 (267)
441 3be4_A Adenylate kinase; malar 84.1 0.52 1.8E-05 44.4 3.0 22 35-56 6-27 (217)
442 1ak2_A Adenylate kinase isoenz 83.9 0.58 2E-05 44.7 3.2 22 35-56 17-38 (233)
443 2ius_A DNA translocase FTSK; n 83.9 0.5 1.7E-05 50.9 2.9 24 33-56 166-189 (512)
444 2dpy_A FLII, flagellum-specifi 83.8 0.41 1.4E-05 50.7 2.3 23 36-58 159-181 (438)
445 4eaq_A DTMP kinase, thymidylat 83.7 0.54 1.8E-05 45.0 2.9 23 35-57 27-49 (229)
446 2p5t_B PEZT; postsegregational 83.6 0.37 1.3E-05 46.8 1.7 23 35-57 33-55 (253)
447 4f4c_A Multidrug resistance pr 83.6 0.47 1.6E-05 57.4 3.0 22 36-57 446-467 (1321)
448 1w1w_A Structural maintenance 83.6 0.48 1.6E-05 50.0 2.7 24 35-58 27-50 (430)
449 2o5v_A DNA replication and rep 83.4 0.45 1.5E-05 48.9 2.3 25 33-57 25-49 (359)
450 3n70_A Transport activator; si 83.2 1.6 5.4E-05 38.1 5.6 23 35-57 25-47 (145)
451 1sxj_C Activator 1 40 kDa subu 83.2 0.75 2.6E-05 46.6 3.9 25 33-57 45-69 (340)
452 2rcn_A Probable GTPase ENGC; Y 83.1 0.42 1.4E-05 49.1 1.9 50 169-219 127-176 (358)
453 3g5u_A MCG1178, multidrug resi 83.0 0.54 1.9E-05 56.7 3.1 22 36-57 418-439 (1284)
454 4f4c_A Multidrug resistance pr 82.9 0.43 1.5E-05 57.8 2.2 22 36-57 1107-1128(1321)
455 1uj2_A Uridine-cytidine kinase 82.9 0.6 2.1E-05 45.2 2.9 22 35-56 23-44 (252)
456 3eph_A TRNA isopentenyltransfe 82.8 1.6 5.6E-05 45.3 6.2 22 35-56 3-24 (409)
457 1e69_A Chromosome segregation 82.8 0.48 1.7E-05 47.8 2.2 24 34-57 24-47 (322)
458 3auy_A DNA double-strand break 82.8 0.55 1.9E-05 48.5 2.7 22 34-55 25-46 (371)
459 4aby_A DNA repair protein RECN 82.7 0.19 6.4E-06 52.7 -0.9 24 34-57 60-83 (415)
460 2ph1_A Nucleotide-binding prot 82.6 3.3 0.00011 40.1 8.2 66 135-215 128-194 (262)
461 2f6r_A COA synthase, bifunctio 82.2 0.6 2E-05 46.2 2.6 20 36-55 77-96 (281)
462 3co5_A Putative two-component 82.2 1.3 4.4E-05 38.7 4.6 23 35-57 28-50 (143)
463 1nlf_A Regulatory protein REPA 82.2 0.52 1.8E-05 46.4 2.1 21 36-56 32-52 (279)
464 1q3t_A Cytidylate kinase; nucl 82.1 0.6 2.1E-05 44.7 2.5 24 33-56 15-38 (236)
465 3bos_A Putative DNA replicatio 82.0 0.77 2.6E-05 43.3 3.2 24 34-57 52-75 (242)
466 1ltq_A Polynucleotide kinase; 81.9 0.68 2.3E-05 46.0 2.9 21 36-56 4-24 (301)
467 3bfv_A CAPA1, CAPB2, membrane 81.9 1.2 4.2E-05 43.6 4.8 65 136-216 192-257 (271)
468 1njg_A DNA polymerase III subu 81.9 1.1 3.9E-05 41.9 4.4 22 36-57 47-68 (250)
469 2ce7_A Cell division protein F 81.9 0.8 2.7E-05 48.9 3.6 49 6-57 23-72 (476)
470 2iw3_A Elongation factor 3A; a 81.6 0.45 1.6E-05 55.2 1.6 23 36-58 701-723 (986)
471 1fnn_A CDC6P, cell division co 81.1 0.7 2.4E-05 47.4 2.8 24 34-57 44-67 (389)
472 3exa_A TRNA delta(2)-isopenten 81.1 0.93 3.2E-05 45.5 3.5 23 35-57 4-26 (322)
473 3sr0_A Adenylate kinase; phosp 80.9 0.87 3E-05 42.8 3.1 22 36-57 2-23 (206)
474 2w58_A DNAI, primosome compone 80.2 0.98 3.4E-05 41.7 3.2 23 35-57 55-77 (202)
475 1p5z_B DCK, deoxycytidine kina 80.2 0.78 2.7E-05 44.7 2.6 25 33-57 23-47 (263)
476 1a5t_A Delta prime, HOLB; zinc 79.7 7.2 0.00025 39.2 9.8 24 33-56 22-46 (334)
477 2qz4_A Paraplegin; AAA+, SPG7, 79.5 2.5 8.5E-05 40.6 6.0 23 35-57 40-62 (262)
478 2iut_A DNA translocase FTSK; n 79.3 0.93 3.2E-05 49.3 3.0 24 33-56 213-236 (574)
479 3la6_A Tyrosine-protein kinase 79.2 2.4 8.1E-05 41.9 5.8 65 136-216 202-267 (286)
480 3cr8_A Sulfate adenylyltranfer 79.1 0.5 1.7E-05 51.6 0.8 22 36-57 371-392 (552)
481 3a8t_A Adenylate isopentenyltr 78.9 1.6 5.3E-05 44.3 4.4 23 35-57 41-63 (339)
482 2qmh_A HPR kinase/phosphorylas 78.9 1.1 3.6E-05 42.0 2.9 22 36-57 36-57 (205)
483 3umf_A Adenylate kinase; rossm 78.8 1.1 3.6E-05 42.6 2.9 22 36-57 31-52 (217)
484 1d2n_A N-ethylmaleimide-sensit 78.7 1.6 5.5E-05 42.5 4.4 24 34-57 64-87 (272)
485 1sxj_D Activator 1 41 kDa subu 78.5 1.5 5.2E-05 44.2 4.3 25 33-57 57-81 (353)
486 3foz_A TRNA delta(2)-isopenten 78.4 1.1 3.7E-05 45.0 2.9 22 35-56 11-32 (316)
487 2iw3_A Elongation factor 3A; a 78.3 0.86 3E-05 52.9 2.5 22 36-57 463-484 (986)
488 1c9k_A COBU, adenosylcobinamid 78.1 1.1 3.7E-05 41.2 2.7 21 37-57 2-22 (180)
489 2ocp_A DGK, deoxyguanosine kin 78.0 1 3.5E-05 43.1 2.7 22 36-57 4-25 (241)
490 3zvl_A Bifunctional polynucleo 78.0 1.1 3.6E-05 47.2 2.9 21 36-56 260-280 (416)
491 3ux8_A Excinuclease ABC, A sub 77.8 0.95 3.3E-05 50.7 2.7 20 36-55 350-369 (670)
492 4ag6_A VIRB4 ATPase, type IV s 77.7 1.1 3.8E-05 46.4 3.0 26 33-58 34-59 (392)
493 3cwq_A Para family chromosome 77.7 1.6 5.5E-05 40.8 3.8 66 135-217 67-134 (209)
494 1a7j_A Phosphoribulokinase; tr 77.3 0.66 2.3E-05 46.2 1.0 23 34-56 5-27 (290)
495 3ea0_A ATPase, para family; al 77.0 2.8 9.6E-05 39.7 5.5 67 136-217 119-186 (245)
496 3d3q_A TRNA delta(2)-isopenten 76.8 1.2 4.2E-05 45.2 2.9 23 35-57 8-30 (340)
497 3pfi_A Holliday junction ATP-d 76.8 2.7 9.3E-05 42.2 5.6 25 33-57 54-78 (338)
498 1pzn_A RAD51, DNA repair and r 76.6 0.97 3.3E-05 46.2 2.1 23 36-58 133-155 (349)
499 3h4m_A Proteasome-activating n 76.6 2.3 7.9E-05 41.5 4.9 24 34-57 51-74 (285)
500 3thx_B DNA mismatch repair pro 76.5 3.4 0.00012 47.7 6.8 22 36-57 675-696 (918)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=1.7e-94 Score=810.41 Aligned_cols=593 Identities=39% Similarity=0.651 Sum_probs=518.0
Q ss_pred CcchHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecC
Q 007263 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (610)
Q Consensus 1 ~~~l~~~~~~lq~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~ 80 (610)
|++||+++|+|||.+.++|.. ..+++|+|+|||.+|+|||||+|+|+|.++||+|.++|||||+++++.+.+
T Consensus 26 ~~~li~~inkl~d~l~~lg~~--------~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~ 97 (772)
T 3zvr_A 26 MEDLIPLVNRLQDAFSAIGQN--------ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST 97 (772)
T ss_dssp GGGHHHHHHHHHHHHHTTTCC--------GGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHhcCcc--------ccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCC
Confidence 789999999999999999963 125899999999999999999999999999999999999999999998875
Q ss_pred CCCccceeeccCCCcccCChHHHHHHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHH
Q 007263 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (610)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~ 160 (610)
.+|+++.+.++..+.+++++..++..++..+.|.+.+++.+++.++|++|+.++++||||||+...+..+||.++..
T Consensus 98 ---~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~ 174 (772)
T 3zvr_A 98 ---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEF 174 (772)
T ss_dssp ---SCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHH
T ss_pred ---cchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999888888998999
Q ss_pred HHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEe
Q 007263 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240 (610)
Q Consensus 161 ~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 240 (610)
.+.+++..|+.....+|++|.+++.++..++.+.+++.+++.+.|+|+|+||+|+++++....+++.+...++++||..|
T Consensus 175 ~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~V 254 (772)
T 3zvr_A 175 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 254 (772)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEEC
T ss_pred HHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCce
Confidence 99999999997544455555566777878888789999999999999999999999887766677776667788899999
Q ss_pred eeCChhhhhccccHHHHHHHHHhHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Q 007263 241 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRL 320 (610)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~el~~l 320 (610)
+++|+.+......+.++...|..||..+|+|..+.+++|+..|++.|++.|..|++++||+++.+|+..+..++.++.++
T Consensus 255 V~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~ 334 (772)
T 3zvr_A 255 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEY 334 (772)
T ss_dssp CCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHh
Confidence 99999887777788888888899999999998888999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHhhcCCC--------CCCchHHHHHhhhHHHHHhhhhhhhccchHHHHHHHHh
Q 007263 321 GKPIAADAGGKLYTIMEICRLFDQIYKEHLDGVR--------PGGDKIYYVFDNQLPAALKRLQFDKQLSMENIRKLITE 392 (610)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~--------~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 392 (610)
|.+.+.++..+..+|++++++|++.|.++++|.+ .||+||+++|++.|+..+.++++++.+++++|+++|+|
T Consensus 335 ~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n 414 (772)
T 3zvr_A 335 KNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKN 414 (772)
T ss_dssp HHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHh
Confidence 9888777777777899999999999999999998 58999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCchHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhccCccCcchhHHHHHHHHHHHHHHHHHHHHH
Q 007263 393 ADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTS 472 (610)
Q Consensus 393 ~~g~~p~~~~pe~af~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~~~~~l~~~~~~a 472 (610)
++|++|++|+|+.+|+.||++||++|++||++||+.|+++|.+++++|. .+|.|||+|++++.+++.++|++++++|
T Consensus 415 ~~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~---~~l~RfP~Lr~ei~~iv~~~Lre~~~~t 491 (772)
T 3zvr_A 415 IHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS---EKLQQYPRLREEMERIVTTHIREREGRT 491 (772)
T ss_dssp CC------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG---GGGTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999984 4799999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccchh---hhccC--ch-------------h----h-c------------cCCCC------------
Q 007263 473 KKATLQLVDMECSYLTVD---FFRKL--PQ-------------D----V-D------------KGGNP------------ 505 (610)
Q Consensus 473 ~~~i~~li~~E~~yi~~d---~~~~~--~~-------------~----~-~------------~~~~~------------ 505 (610)
+++|.+||+||++||||+ |.+.. .+ + + . ++|+.
T Consensus 492 ~~~V~~LId~E~ayintnHpdf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (772)
T 3zvr_A 492 KEQVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLS 571 (772)
T ss_dssp HHHHHHHHHHHHTCCCTTCTTCCCC---------------------CCEEEEEEEEESSSCCC---CCEEEEEEESSEEE
T ss_pred HHHHHHHHHHhcCCCCCCChhhhchHHHHHHHHHHhhcccccCCccccceeeeeeeecccccccCCCccceeeccccccc
Confidence 999999999999999994 43210 00 0 0 0 00000
Q ss_pred ----------------------------------------CCCC-----------------------------------C
Q 007263 506 ----------------------------------------THSI-----------------------------------F 510 (610)
Q Consensus 506 ----------------------------------------~~~~-----------------------------------~ 510 (610)
...+ .
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (772)
T 3zvr_A 572 WYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVG 651 (772)
T ss_dssp EESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHHHHTTCCBC---
T ss_pred cccchhhhcccccccccccccchhhhccccccccccccCCccccccchhhhhhhhccccccchhhHHhhhhcccCCcccc
Confidence 0000 0
Q ss_pred ------C-C----------CChH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 007263 511 ------D-R----------YNDS---YLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQK 570 (610)
Q Consensus 511 ------~-~----------~~~~---~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~l~~~L~~~~~~ 570 (610)
. . +.++ .++.|+.+|+|||.||+|++.|+|||+|||||||.+++.++.+|+..||..+.
T Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ly~~~~- 730 (772)
T 3zvr_A 652 DKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGD- 730 (772)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTCC-
T ss_pred ccccccccCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-
Confidence 0 0 0111 35789999999999999999999999999999999999999999999999865
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 007263 571 RLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWS 609 (610)
Q Consensus 571 ~~~~ll~E~~~i~~kR~~l~~~~~~L~~A~~~l~~~~~~ 609 (610)
+..||.|+|++++||++|.+++++|++|..+|++|+++
T Consensus 731 -~~~lm~Es~~~~~~r~~~~~~~~~l~~a~~ii~~i~~~ 768 (772)
T 3zvr_A 731 -QNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTT 768 (772)
T ss_dssp -TTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred -HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999864
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=2.3e-85 Score=734.82 Aligned_cols=552 Identities=27% Similarity=0.406 Sum_probs=474.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccC-CCcccCChHHHHHHHHHH
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHI-PRKRFTDFAAVRKEIQDE 110 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~i~~~ 110 (610)
.++|+|+|||++|||||||+++|+|. .+|+++|.||+++..+.+.+.+....+...+... ....+.++..+.+.+...
T Consensus 43 l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 43 LALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA 121 (608)
T ss_dssp CCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH
T ss_pred ccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHH
Confidence 48999999999999999999999998 5799999999999999877765433332222211 234566788888888887
Q ss_pred hhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH
Q 007263 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (610)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~ 190 (610)
.....+.+.+++...+.+.+.++..|+++|+|+||+...+..+++.+....+.+++..|+.++.++++++.+++.|.+++
T Consensus 122 ~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~ 201 (608)
T 3szr_A 122 QNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT 201 (608)
T ss_dssp HHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC
T ss_pred HHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH
Confidence 77777888899999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCCCc--HHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHHHHHhHhccC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTD--AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREYFSTT 268 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~ 268 (610)
.++++++.+++.|.+||+|+||+|+++.++. +.+++.|...++++||++|+|+|+++++...+..++...|..||.++
T Consensus 202 ~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~~~~~~~~~~~~~~~~~E~~fF~~~ 281 (608)
T 3szr_A 202 EALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENH 281 (608)
T ss_dssp HHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSCTTCTTTCCCHHHHTTTHHHHTTTC
T ss_pred HHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCchhhcccCCCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999988763 56788899999999999999999999999999999999999999999
Q ss_pred CCCchhhh--ccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHHHH
Q 007263 269 PEYKHLAQ--RMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYTIMEICRLFDQIY 346 (610)
Q Consensus 269 ~~~~~~~~--~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~el~~l~~~~~~~~~~~~~~l~~~~~~f~~~~ 346 (610)
+||+.+.+ ++|+++|+++|+++|.+||+++||.++.+|+..+.+++.+|..+|.+++.++.++..+|++++++|++.+
T Consensus 282 ~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~~~~~~~~~~~l~~~~~~f~~~~ 361 (608)
T 3szr_A 282 PYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDI 361 (608)
T ss_dssp TTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998764 8999999999999999999999999999999999999999999999888877788889999999999999
Q ss_pred HHhhcCCCCCC---chHHHHHhhhHHHHHhhhhh----hhccchHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhh
Q 007263 347 KEHLDGVRPGG---DKIYYVFDNQLPAALKRLQF----DKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIR 419 (610)
Q Consensus 347 ~~~i~g~~~~~---~~i~~~f~~~~~~~~~~~~~----~~~~~~~~i~~~i~~~~g~~p~~~~pe~af~~li~~~i~~l~ 419 (610)
.++++|.+..+ .+++..+++.|..|...+.. ......++|++.+++++|.++++|+|+.+|+.||++||++|+
T Consensus 362 ~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~f~~~~~fe~lvk~qi~~l~ 441 (608)
T 3szr_A 362 TALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALE 441 (608)
T ss_dssp HHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSSCSSCTHHHHHHHHHHHGGGH
T ss_pred HHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 99999997533 57888888777777655432 222346799999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhh-hccCchh
Q 007263 420 GPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDF-FRKLPQD 498 (610)
Q Consensus 420 ~Ps~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~~~~~l~~~~~~a~~~i~~li~~E~~yi~~d~-~~~~~~~ 498 (610)
+|+.+|++.|++++..++.+++. .+|.|||+|++++.+++.++++++.++|+++|+++|+||+.|||+|. |..
T Consensus 442 ~Pa~~~v~~V~~~v~~~~~~~~~--~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~li~mE~~~~~~d~~~~~---- 515 (608)
T 3szr_A 442 EPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYGAFQSSSA---- 515 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccC----
Confidence 99999999999999999988765 48999999999999999999999999999999999999999999863 321
Q ss_pred hccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhcCC
Q 007263 499 VDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNE 578 (610)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~l~~~L~~~~~~~~~~ll~E 578 (610)
+ ...+.+|+.+|+|||+||+||++|+|||+||||||+.+++.||.+|++.||+.+. +++||+|
T Consensus 516 ----~-----------~~~~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~~~~--~~~ll~E 578 (608)
T 3szr_A 516 ----T-----------DSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDT--YSWLLKE 578 (608)
T ss_dssp ------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCHHH--HHHHTCC
T ss_pred ----C-----------CccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchh--HHHHhCC
Confidence 0 1113579999999999999999999999999999999999999999999998765 9999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007263 579 DPAVMERRSALAKRLELYRSAQSEIDAVA 607 (610)
Q Consensus 579 ~~~i~~kR~~l~~~~~~L~~A~~~l~~~~ 607 (610)
||++++||+.|++++++|++|+++|.+|.
T Consensus 579 ~~~~~~~R~~l~~~~~~L~~A~~~l~~~~ 607 (608)
T 3szr_A 579 RSDTSDKRKFLKERLARLTQARRRLAQFP 607 (608)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999874
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=9.3e-52 Score=436.62 Aligned_cols=331 Identities=89% Similarity=1.310 Sum_probs=297.3
Q ss_pred CcchHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecC
Q 007263 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (610)
Q Consensus 1 ~~~l~~~~~~lq~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~ 80 (610)
||+|||++|+||++++.+|..+....|+.+...+|+|+|||++|||||||+|+|+|.+|+|++.++|||+|+++++.+.+
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC
Confidence 89999999999999999997655567777788999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeeccCCCcccCChHHHHHHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHH
Q 007263 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (610)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~ 160 (610)
+.+.+++.|.+.++..+.+|+.+..++..++....|.+.+++.+++.+++.+|..++++||||||+.+....+|+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 81 DGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK 160 (360)
T ss_dssp SCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH
T ss_pred CcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEe
Q 007263 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240 (610)
Q Consensus 161 ~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 240 (610)
.+..++..|++++|+|||++++++.+..+++.+.+++.+++.+.|+|+|+||+|++++++...+.+.+...++++||++|
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEE
Confidence 99999999999999999999999888888899999999999999999999999999887777888888889999999999
Q ss_pred eeCChhhhhccccHHHHHHHHHhHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Q 007263 241 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRL 320 (610)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~el~~l 320 (610)
+++|+.+++...+..++...|..||.++++|+.+.+++|+++|+++|+++|.+||+++||.++.+|+..+.+++++|.+|
T Consensus 241 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~l 320 (360)
T 3t34_A 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRL 320 (360)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC----
T ss_pred EECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchh
Q 007263 321 GKPIAADAGGK 331 (610)
Q Consensus 321 ~~~~~~~~~~~ 331 (610)
|++++.++.++
T Consensus 321 g~~~~~~~~~~ 331 (360)
T 3t34_A 321 GKPIAHGTDSR 331 (360)
T ss_dssp -----------
T ss_pred CCCCCCCHHHH
Confidence 99988766543
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=1.3e-46 Score=396.01 Aligned_cols=338 Identities=52% Similarity=0.821 Sum_probs=307.6
Q ss_pred CcchHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecC
Q 007263 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (610)
Q Consensus 1 ~~~l~~~~~~lq~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~ 80 (610)
|+.|++++|+|||.+..+|... ..++|+|+|||.+|+|||||+|+|+|.+|+|++.++||++|+++++.+.+
T Consensus 6 ~~~l~~~~~~l~d~l~~~g~~~--------~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~ 77 (353)
T 2x2e_A 6 MEDLIPLVNRLQDAFSAIGQNA--------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT 77 (353)
T ss_dssp CCSCHHHHHHHHHHHHTTTCGG--------GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHcCCCC--------CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCC
Confidence 8999999999999999988631 24799999999999999999999999999999999999999999988764
Q ss_pred CCCccceeeccCCCcccCChHHHHHHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHH
Q 007263 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (610)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~ 160 (610)
.+|++|.+.++..++++..+..++..++.++.|.+.+++...+.+++++|+..+++||||||+.+.+..+|+.++.+
T Consensus 78 ---~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~ 154 (353)
T 2x2e_A 78 ---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEF 154 (353)
T ss_dssp ---SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHH
T ss_pred ---ccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHH
Confidence 47889999999999999999999999999998988999999999999999999999999999999888888988889
Q ss_pred HHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEe
Q 007263 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240 (610)
Q Consensus 161 ~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 240 (610)
.+.+++..|+..++.+||+|++++.++.+++.+.+++.+++.+.|+++|+||+|++++++++.+++.+...++++||+.|
T Consensus 155 ~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v 234 (353)
T 2x2e_A 155 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 234 (353)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEE
Confidence 99999999999999999999888888888888889999999999999999999999877666777787778888999999
Q ss_pred eeCChhhhhccccHHHHHHHHHhHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Q 007263 241 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRL 320 (610)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~el~~l 320 (610)
.++|+.+.....++......|.+||++++.|+..++++|+..|++.|++.|..|++++||++..+++..+..++.++..+
T Consensus 235 ~~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~ 314 (353)
T 2x2e_A 235 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEY 314 (353)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999888777788888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhH--HHHHHHHHHHHHHHHHh
Q 007263 321 GKPIAADAGGKL--YTIMEICRLFDQIYKEH 349 (610)
Q Consensus 321 ~~~~~~~~~~~~--~~l~~~~~~f~~~~~~~ 349 (610)
+...+.++..+. .++++++++|++.|...
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 345 (353)
T 2x2e_A 315 KNFRPDKHGTDSRVDEMLRMYHALKEALSII 345 (353)
T ss_dssp HHHCCCSSSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCchhhhhHHHHHHHHHHHHHHHHHHh
Confidence 977666654444 78999999999988653
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=7.6e-40 Score=339.14 Aligned_cols=310 Identities=52% Similarity=0.824 Sum_probs=246.2
Q ss_pred cchHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCC
Q 007263 2 ENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE 81 (610)
Q Consensus 2 ~~l~~~~~~lq~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~ 81 (610)
|+||+++|+||+++..+|.. ..++|+|+|||.+|+|||||+|+|+|.+++|++.++||++|+++++.+.+.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~---------~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~ 71 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSD---------PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPI 71 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSC---------TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCC
T ss_pred CchHHHHHHHHHHHHHcCCC---------CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCC
Confidence 57999999999999888753 147999999999999999999999999999999999999999998887642
Q ss_pred -----CCccceeeccCCCcccCChHHHHHHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCC
Q 007263 82 -----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPD 156 (610)
Q Consensus 82 -----~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~ 156 (610)
....|+++.+.++..+.++.++.+++..++.++.|.+.+++..++.+++.+|+..+++||||||+.+.+..+++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~ 151 (315)
T 1jwy_B 72 ADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPT 151 (315)
T ss_dssp CTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------
T ss_pred cccccchhhhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCch
Confidence 346788999999999999999999999999898888889999999999999999999999999998766666777
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCC
Q 007263 157 SIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP 236 (610)
Q Consensus 157 ~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g 236 (610)
.+...+..++..|++.+|++|+++++++.++...+.+.+++.+++.+.|+++|+||+|+.++.....+.+.+....++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 231 (315)
T 1jwy_B 152 DIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLG 231 (315)
T ss_dssp CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTC
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCC
Confidence 78888999999999999999999998777766666667888888889999999999999977655667777655666789
Q ss_pred eeEeeeCChhhhhccccHHHHHHHHHhHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 007263 237 WIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENE 316 (610)
Q Consensus 237 ~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~e 316 (610)
|+.|++.|+.+++.+....+....+..||...++|..+..+.|+..|...+++.+..++++++|++..+++..+.+++++
T Consensus 232 ~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~ 311 (315)
T 1jwy_B 232 FIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGE 311 (315)
T ss_dssp EEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred eEEEecCChhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999998877888888888888899888888887788999999999999999999999999999999999999999
Q ss_pred HHHc
Q 007263 317 LSRL 320 (610)
Q Consensus 317 l~~l 320 (610)
|.+|
T Consensus 312 l~~~ 315 (315)
T 1jwy_B 312 LSTY 315 (315)
T ss_dssp ----
T ss_pred HHhC
Confidence 8764
No 6
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.5e-40 Score=323.94 Aligned_cols=251 Identities=13% Similarity=0.174 Sum_probs=192.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcCCCC---CCchHHHHHhhhHHHHHhhhhhhhccc----hHHHHHHHHhhcCCCCCC
Q 007263 328 AGGKLYTIMEICRLFDQIYKEHLDGVRP---GGDKIYYVFDNQLPAALKRLQFDKQLS----MENIRKLITEADGYQPHL 400 (610)
Q Consensus 328 ~~~~~~~l~~~~~~f~~~~~~~i~g~~~---~~~~i~~~f~~~~~~~~~~~~~~~~~~----~~~i~~~i~~~~g~~p~~ 400 (610)
+.+++.||+..++.|++.+.+++.|... |+.|++..++..|.+|...++-..... .++|....++++|..++.
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGrELPg 82 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELPG 82 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecccCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCcccCC
Confidence 3467889999999999999999999863 567999999999999988765322211 357777888999999999
Q ss_pred CCchHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhccCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007263 401 IAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLV 480 (610)
Q Consensus 401 ~~pe~af~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~~~~~l~~~~~~a~~~i~~li 480 (610)
|+|+.+|+.||++||++|++||++|++.|++++.+++.++.. ++|+|||+|++.+.+++.+++.+|..+|+++|+++|
T Consensus 83 Fv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~--~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~~~ 160 (271)
T 3ljb_A 83 FVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHF 160 (271)
T ss_dssp CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998876 599999999999999999999999999999999999
Q ss_pred HHhcCccchh-hhccCchhhc-c--CC---CCCCC---CCCCCCh-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007263 481 DMECSYLTVD-FFRKLPQDVD-K--GG---NPTHS---IFDRYND-SYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQV 549 (610)
Q Consensus 481 ~~E~~yi~~d-~~~~~~~~~~-~--~~---~~~~~---~~~~~~~-~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv 549 (610)
+||+.+||+| .|....+.+. + .+ .+..+ ....... +.+.+|+.||.|||+||++|++|+|||+|+||||
T Consensus 161 ~mE~~vytqD~~Y~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~~l~sYf~i~~~rl~d~IP~~I~~~ll 240 (271)
T 3ljb_A 161 QMEQIVYCQDQVYRGALQKVREKELEEEKKKKSWDFGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFML 240 (271)
T ss_dssp HHHTSCC----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcccccCCHHHHHHHHHHHHHHhcccccccccccccccCCCCccchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 9999888886 3432211110 0 00 00000 0011112 4578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhhhhcCCChHH
Q 007263 550 REAKRSLLDHFFTELGKLEQKRLSNLLNEDPAV 582 (610)
Q Consensus 550 ~~~~~~l~~~l~~~L~~~~~~~~~~ll~E~~~i 582 (610)
+.+++.||.+|++.||+++. +++||+|||++
T Consensus 241 ~~~~~~lQ~~ml~~l~~~~~--~~~LL~E~~d~ 271 (271)
T 3ljb_A 241 QTYGQQLQKAMLQLLQDKDT--YSWLLKERSDT 271 (271)
T ss_dssp HHHHHHHHHHHHHTTSCGGG--HHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHhchhh--HHHHhcCCCCC
Confidence 99999999999999999875 99999999985
No 7
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=2e-37 Score=318.28 Aligned_cols=298 Identities=58% Similarity=0.910 Sum_probs=260.7
Q ss_pred CcchHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecC
Q 007263 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (610)
Q Consensus 1 ~~~l~~~~~~lq~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~ 80 (610)
|++|++++++|++.+..+|... ...+|+|+|||.+|+|||||+|+|+|..++|++.++||++|+++++.+.+
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~ 72 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNA--------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST 72 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCT--------TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHHHhcCCCC--------CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCC
Confidence 8999999999999999888531 24789999999999999999999999999999999999999999987764
Q ss_pred CCCccceeeccCCCcccCChHHHHHHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHH
Q 007263 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (610)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~ 160 (610)
.+|.++.+..+..+++++.+...+...+.++.|.+.+++...+.+++++|+..+++||||||+......++++++..
T Consensus 73 ---~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~ 149 (299)
T 2aka_B 73 ---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEF 149 (299)
T ss_dssp ---SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHH
T ss_pred ---cccchhhhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHH
Confidence 46788888888889999999988888888888888899999999999999889999999999988766666777888
Q ss_pred HHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEe
Q 007263 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240 (610)
Q Consensus 161 ~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 240 (610)
.+..++..|++.++.+|++|.+++.++..++...+++.+++.+.|+++|+||+|+.+++....+.+++....++.||+.+
T Consensus 150 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 229 (299)
T 2aka_B 150 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 229 (299)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEE
Confidence 88999999999999988766667777777777778999999999999999999999776555666766556667789999
Q ss_pred eeCChhhhhccccHHHHHHHHHhHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 007263 241 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKT 309 (610)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~ 309 (610)
.+.|+...............|.+||+.++.|+....++|+..|.+.|++.+..|+++++|++..+++.+
T Consensus 230 ~~~SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~ 298 (299)
T 2aka_B 230 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 298 (299)
T ss_dssp CCCCCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 999987666666677777789999999999999989999999999999999999999999999998865
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=1.7e-17 Score=188.31 Aligned_cols=172 Identities=16% Similarity=0.241 Sum_probs=111.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHH---HH
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEI---QD 109 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i---~~ 109 (610)
.-++|+|+|.+|+|||||+|+|+|.+++|++..++|++|+.+.+... ......+.+.......++..+...+ .+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~---~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~ 144 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPE---KKVTIHFNDGKSPQQLDFQNFKYKYTIDPA 144 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSS---CEEEEEESSSCCCCEEEHHHHHHHSCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCC---CeEEEEEcCCCcccccChhhhhhhhcCCHH
Confidence 46789999999999999999999999999999999999999875321 1111112121111222222222110 00
Q ss_pred HhhhhcCCCCccccccEEEEEecCCC---CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc
Q 007263 110 ETDRETGRTKQISSVPIHLSIYSPNV---VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD 186 (610)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~---~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d 186 (610)
+...+.+.+.........++++.|.. .+++||||||+..... ....+..|++.+|++|+|+++.+ .
T Consensus 145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----------~~~~~~~~i~~aD~vL~Vvda~~-~ 213 (695)
T 2j69_A 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----------RNELSLGYVNNCHAILFVMRASQ-P 213 (695)
T ss_dssp HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----------CHHHHTHHHHSSSEEEEEEETTS-T
T ss_pred HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----------HHHHHHHHHHhCCEEEEEEeCCC-c
Confidence 11112222233344555666776653 4799999999976432 15678899999999999998654 3
Q ss_pred cccHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 187 LATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 187 ~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
....+...+...+...+.|+++|+||+|+.++
T Consensus 214 ~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 214 CTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred cchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 33333322334566678899999999999754
No 9
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.74 E-value=5.7e-18 Score=174.10 Aligned_cols=243 Identities=16% Similarity=0.242 Sum_probs=153.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..+.|+++|.+|+|||||+|+|+|..+ .+++..|
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~-----~i~s~~~----------------------------------------- 42 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKV-----SIISPKA----------------------------------------- 42 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCC-----SCCCSSS-----------------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc-----cccCCCC-----------------------------------------
Confidence 456899999999999999999999887 3333333
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+.+ ...+......+...+++||||||+.+... ...+.+.+...+..|++.+|++|+|+++.+.. ....
T Consensus 43 ---~tT----~~~~~~~~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~--~~~~ 110 (308)
T 3iev_A 43 ---GTT----RMRVLGVKNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFMIDATEGW--RPRD 110 (308)
T ss_dssp ---CCC----CSCEEEEEEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSEEEEEEETTTBS--CHHH
T ss_pred ---Cce----eeEEEEEEecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCEEEEEEeCCCCC--Cchh
Confidence 000 00111111112145799999999986431 23466777788899999999999999876532 2223
Q ss_pred HHH-HHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccC--CCeeEeeeCChhhhhccccHHHHHHHHHhHhccCC
Q 007263 193 IKI-SREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLK--FPWIGVVNRSQADINKNVDMIAARRREREYFSTTP 269 (610)
Q Consensus 193 l~l-~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~--~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~ 269 (610)
..+ ...+...+.|+++|+||+|+.++.....+.+......++ ..++.+++.+..+++++...+.....+.++++..+
T Consensus 111 ~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~ 190 (308)
T 3iev_A 111 EEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPED 190 (308)
T ss_dssp HHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTT
T ss_pred HHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcc
Confidence 333 555655678999999999998433333333222122222 45777777777777777776666555555544444
Q ss_pred CCchhhhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH--HHHHHcCCCCCCCcchhHHHHH
Q 007263 270 EYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELE--NELSRLGKPIAADAGGKLYTIM 336 (610)
Q Consensus 270 ~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~--~el~~l~~~~~~~~~~~~~~l~ 336 (610)
..++.+.+ ....+.+++.+..++.+++|+......+.+.+.. +...++.+.+.+++++++.+++
T Consensus 191 ~~td~~~~---~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~~~i~a~i~ve~~~~k~i~i 256 (308)
T 3iev_A 191 MITDLPLR---LLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIVDRENLKPIII 256 (308)
T ss_dssp CCBCCCHH---HHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTSEEEEEEEEESSGGGHHHHH
T ss_pred cccCCCHH---HHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCeEEEEEEEEEccCCcceEEE
Confidence 34432222 2345788899999999999998766554444322 1233455556667777776654
No 10
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.73 E-value=3e-18 Score=175.35 Aligned_cols=238 Identities=16% Similarity=0.175 Sum_probs=144.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..+.|++||.+|+|||||+|+|+|..+ .+++..|..
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~-----~ivs~~~~t--------------------------------------- 41 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKV-----APISPRPQT--------------------------------------- 41 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCC-----SCCCSSSCC---------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCce-----eeecCCCCc---------------------------------------
Confidence 457899999999999999999999887 333333300
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+. +.+.- +......++.||||||+.+.. ..+...+...+..|++.+|++++|+++.+. . ....
T Consensus 42 -----Tr----~~i~~-i~~~~~~~l~l~DTpG~~~~~-----~~l~~~~~~~~~~~l~~ad~il~VvD~~~~-~-~~~~ 104 (301)
T 1wf3_A 42 -----TR----KRLRG-ILTEGRRQIVFVDTPGLHKPM-----DALGEFMDQEVYEALADVNAVVWVVDLRHP-P-TPED 104 (301)
T ss_dssp -----CC----SCEEE-EEEETTEEEEEEECCCCCCCC-----SHHHHHHHHHHHHHTSSCSEEEEEEETTSC-C-CHHH
T ss_pred -----ee----EEEEE-EEEeCCcEEEEecCccccchh-----hHHHHHHHHHHHHHHhcCCEEEEEEECCCC-C-ChHH
Confidence 00 00000 111234578999999997642 235666778889999999999999987653 2 2222
Q ss_pred HHHHHHhCCC--CCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHHHHHhHhccCCC
Q 007263 193 IKISREVDPT--GERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPE 270 (610)
Q Consensus 193 l~l~~~~~~~--~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~ 270 (610)
..+...+... +.|+++|+||+|+........+.+... .+ ...++.+++....+++.+...+.....+.++++....
T Consensus 105 ~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~-~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~~~ 182 (301)
T 1wf3_A 105 ELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LP-EAEPRMLSALDERQVAELKADLLALMPEGPFFYPEDY 182 (301)
T ss_dssp HHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-ST-TSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSCTTC
T ss_pred HHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cC-cCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCCccc
Confidence 3343444433 789999999999975432122333211 00 1124555555556776666665554445555554433
Q ss_pred C-chhhhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHH
Q 007263 271 Y-KHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYTIM 336 (610)
Q Consensus 271 ~-~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~el~~l~~~~~~~~~~~~~~l~ 336 (610)
+ ++.++++ ...+.+++.+.+.+.+++|+......+.+.+.++....+...+.++++++..+++
T Consensus 183 ~~td~~~~~---~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~~i~ve~~~~k~iii 246 (301)
T 1wf3_A 183 AKSDQTFGE---WVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPSQKAIVI 246 (301)
T ss_dssp CSBSSCHHH---HHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEEEEESSHHHHHHHH
T ss_pred ccCCCCHHH---HHHHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEEEEEEeeCCceEEEE
Confidence 4 4433332 3567888999999999999987665544442111222233344556666666554
No 11
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.61 E-value=5e-17 Score=166.51 Aligned_cols=236 Identities=14% Similarity=0.202 Sum_probs=132.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccc-cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
..+.|++||.+|+|||||+|+|+|..+-+.+..+ +|+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~--------------------------------------- 47 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRI--------------------------------------- 47 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCE---------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeE---------------------------------------
Confidence 4578999999999999999999998762221111 122110
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCC-ccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLT-KVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~-~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~ 190 (610)
.| +...+..+++|+||||+. .... .+.......+..+++.+|++++++++.. +..
T Consensus 48 ---~g-------------i~~~~~~~i~~iDTpG~~~~~~~-----~l~~~~~~~~~~~l~~~D~vl~Vvd~~~--~~~- 103 (301)
T 1ega_A 48 ---VG-------------IHTEGAYQAIYVDTPGLHMEEKR-----AINRLMNKAASSSIGDVELVIFVVEGTR--WTP- 103 (301)
T ss_dssp ---EE-------------EEEETTEEEEEESSSSCCHHHHH-----HHHHHHTCCTTSCCCCEEEEEEEEETTC--CCH-
T ss_pred ---EE-------------EEEECCeeEEEEECcCCCccchh-----hHHHHHHHHHHHHHhcCCEEEEEEeCCC--CCH-
Confidence 01 111123478999999986 3210 1222223335667889999999998654 433
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCe---eEeeeCChhhhhccccHHHHHHHHHhHhcc
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPW---IGVVNRSQADINKNVDMIAARRREREYFST 267 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~---~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~ 267 (610)
....+++.+...+.|.++|+||+|+........+.+... ...+|+ +.++.....+++.+.+.+.....+.++++.
T Consensus 104 ~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l--~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~ 181 (301)
T 1ega_A 104 DDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFL--ASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFP 181 (301)
T ss_dssp HHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHH--HTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCSSC
T ss_pred HHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHH--HHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCCCC
Confidence 333456666666799999999999975322233333211 112343 444444445555555554444444455444
Q ss_pred CCCCchhhhccChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHH
Q 007263 268 TPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYTIM 336 (610)
Q Consensus 268 ~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~el~~l~~~~~~~~~~~~~~l~ 336 (610)
....++.+++. ...+.+++.+.+.+.+++|+....+.+.+.+.+....++...+...+++++.+++
T Consensus 182 ~~~~~d~~~~~---~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~~i~v~~~~~k~i~i 247 (301)
T 1ega_A 182 EDYITDRSQRF---MASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVI 247 (301)
T ss_dssp TTCCSCCSHHH---HHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEEEEEESSHHHHHHHH
T ss_pred ccccCCCCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEEEEEEEECCceEEEE
Confidence 44444433322 3457788999999999999876554433322111111222333344555555444
No 12
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.53 E-value=8.4e-15 Score=146.29 Aligned_cols=156 Identities=15% Similarity=0.256 Sum_probs=98.3
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
.|+|+++|.+|+|||||+|+|+|..+ ..+ ..|
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-~v~-----~~p------------------------------------------ 32 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-RVG-----NWP------------------------------------------ 32 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-EEE-----ECT------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-Ccc-----CCC------------------------------------------
Confidence 38999999999999999999999863 221 111
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHh--cCCCeEEEEeecCCCccccHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~d~iil~v~~a~~d~~~~~ 191 (610)
|.+... ..-.+.+ +...+.||||||+.+....++..... +.+...|+ ..+|++|+|+++.+ ...
T Consensus 33 --g~Tv~~--~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~vi~VvDas~----~~~ 98 (256)
T 3iby_A 33 --GVTVEK--KTGEFLL---GEHLIEITDLPGVYSLVANAEGISQD---EQIAAQSVIDLEYDCIINVIDACH----LER 98 (256)
T ss_dssp --TSSSEE--EEEEEEE---TTEEEEEEECCCCSSCC------CHH---HHHHHHHHHHSCCSEEEEEEEGGG----HHH
T ss_pred --CceEEE--EEEEEEE---CCeEEEEEeCCCcccccccccCCCHH---HHHHHHHHhhCCCCEEEEEeeCCC----chh
Confidence 111100 0011111 12378999999997754321111222 44567887 89999999998775 234
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCC---cHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
.+.+...+...+.|+++|+||+|+..... +...+ ...++.+++.+++++..+++++...+
T Consensus 99 ~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l----~~~lg~~vi~~SA~~g~gi~el~~~i 161 (256)
T 3iby_A 99 HLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKL----ESLLGCSVIPIQAHKNIGIPALQQSL 161 (256)
T ss_dssp HHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHH----HHHHCSCEEECBGGGTBSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHH----HHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 55677777778999999999999875332 12221 22345677777777777666655544
No 13
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.52 E-value=2.4e-14 Score=143.34 Aligned_cols=172 Identities=17% Similarity=0.135 Sum_probs=100.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccc--cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (610)
..++|+|+|.+|+|||||+|+|+|...++.+... +|+......
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~----------------------------------- 65 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ----------------------------------- 65 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEE-----------------------------------
Confidence 4579999999999999999999998765544332 233221100
Q ss_pred hhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH
Q 007263 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (610)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~ 190 (610)
...+..++.||||||+.+.... .......+...+..+++.+|++|+|+++........
T Consensus 66 --------------------~~~~~~~i~iiDTpG~~~~~~~--~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~ 123 (260)
T 2xtp_A 66 --------------------GSWGNREIVIIDTPDMFSWKDH--CEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQ 123 (260)
T ss_dssp --------------------EEETTEEEEEEECCGGGGSSCC--CHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHH
T ss_pred --------------------EEeCCCEEEEEECcCCCCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHH
Confidence 0112236899999999865432 222334455666778999999999998764211112
Q ss_pred HHHHHHHHhCCC--CCceEEEee-cccCCCCCCcHHHHHc--------CcccccCCC---e--eEeeeCChhhhhccccH
Q 007263 191 DAIKISREVDPT--GERTFGVLT-KIDLMDKGTDAADILE--------GKSYRLKFP---W--IGVVNRSQADINKNVDM 254 (610)
Q Consensus 191 ~~l~l~~~~~~~--~~rti~Vlt-K~D~~~~~~~~~~~l~--------~~~~~l~~g---~--~~v~~~s~~~~~~~~~~ 254 (610)
..+..+...... +.++++|+| |+|+.+. ...+.+. .....++.. | +.+++....++++++..
T Consensus 124 ~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~ 201 (260)
T 2xtp_A 124 QAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDC 201 (260)
T ss_dssp HHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchhhccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHH
Confidence 233344433221 468888888 9999743 2222111 001111111 2 33433444667777776
Q ss_pred HHHHHHHHh
Q 007263 255 IAARRRERE 263 (610)
Q Consensus 255 ~~~~~~e~~ 263 (610)
+.....+..
T Consensus 202 i~~~~~~~~ 210 (260)
T 2xtp_A 202 IEDLLMEKN 210 (260)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCC
Confidence 666665544
No 14
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.50 E-value=8.4e-14 Score=138.36 Aligned_cols=171 Identities=18% Similarity=0.142 Sum_probs=95.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccc--cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (610)
.-.+|++||.+|+|||||+|+|+|..++..+... +|+.+....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~----------------------------------- 64 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGS----------------------------------- 64 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEE-----------------------------------
Confidence 3458999999999999999999998875544332 444432111
Q ss_pred hhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH
Q 007263 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (610)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~ 190 (610)
+ ..+...++||||||+.+..... .+.....+......+.+.+|++|+|++.........
T Consensus 65 -------------------~-~~~~~~i~liDTPG~~~~~~~~-~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~ 123 (247)
T 3lxw_A 65 -------------------R-RWDKCHVEVVDTPDIFSSQVSK-TDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQ 123 (247)
T ss_dssp -------------------E-EETTEEEEEEECCSCSSTTHHH-HSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHH
T ss_pred -------------------E-EECCcEEEEEECCCCCCCCCCc-HHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHH
Confidence 0 1123468999999997543220 012223333333444599999999998764222222
Q ss_pred HHHHHHHHhC-C--CCCceEEEeecccCCCCCCcHHHHH--------cCcccccCCCeeEeeeCC-----hhhhhccccH
Q 007263 191 DAIKISREVD-P--TGERTFGVLTKIDLMDKGTDAADIL--------EGKSYRLKFPWIGVVNRS-----QADINKNVDM 254 (610)
Q Consensus 191 ~~l~l~~~~~-~--~~~rti~VltK~D~~~~~~~~~~~l--------~~~~~~l~~g~~~v~~~s-----~~~~~~~~~~ 254 (610)
..++.+.... + .+.++|+|.||.|+.+. +..+.+ +.....++..|+.+.+.. ..++.++...
T Consensus 124 ~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~--~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~ 201 (247)
T 3lxw_A 124 QAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG--SLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGM 201 (247)
T ss_dssp HHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhhccEEEEEEchHhcCCC--CHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHH
Confidence 3344444432 2 15789999999999653 232222 111223444566555543 2455566655
Q ss_pred HHHHHHH
Q 007263 255 IAARRRE 261 (610)
Q Consensus 255 ~~~~~~e 261 (610)
+.....+
T Consensus 202 i~~~~~~ 208 (247)
T 3lxw_A 202 VEGLVLE 208 (247)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 15
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.49 E-value=5.2e-14 Score=137.01 Aligned_cols=129 Identities=26% Similarity=0.397 Sum_probs=85.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..|+|+|+|..|+|||||+|+|+|..++. .++..|
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~----~~~~~~----------------------------------------- 62 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLA----FASKTP----------------------------------------- 62 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSS----CTTCCC-----------------------------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcce----eecCCC-----------------------------------------
Confidence 57899999999999999999999986321 111111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcC---CCeEEEEeecCCCcccc
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK---PNCIILAISPANQDLAT 189 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~---~d~iil~v~~a~~d~~~ 189 (610)
|. +.......+.......++||||||+..... +......+..++..|+.. +|.+|+++++.. .. .
T Consensus 63 ---~~----t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~-~~-~ 130 (223)
T 4dhe_A 63 ---GR----TQHINYFSVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMILMMDARR-PL-T 130 (223)
T ss_dssp ---CS----CCCEEEEEESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CC-C
T ss_pred ---Cc----ccceEEEEecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCC-CC-C
Confidence 00 011111112223346799999999876432 233556677788888776 666888887654 22 3
Q ss_pred HHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 190 SDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 190 ~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
.....+...+...+.|+++|+||+|+.+.
T Consensus 131 ~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 131 ELDRRMIEWFAPTGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp HHHHHHHHHHGGGCCCEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccCCh
Confidence 33444555565567899999999999854
No 16
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.49 E-value=1.8e-13 Score=148.34 Aligned_cols=159 Identities=20% Similarity=0.281 Sum_probs=98.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
-.+|+++|.+|+|||||+|+|+|.++ .+++..|
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~-----a~vs~~~------------------------------------------ 275 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDR-----AIVTDIP------------------------------------------ 275 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTB-----CCCCCSS------------------------------------------
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCC-----CccCCCC------------------------------------------
Confidence 36899999999999999999999764 2333333
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCC-ccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLT-KVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~-~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
|.+..+....+. + +...++|+||||+. .......... -..+..|++.+|++|+|++.++.. +.+.
T Consensus 276 --gTT~d~~~~~i~--~---~g~~~~l~DTaG~~~~~~~~ve~~g-----i~~~~~~~~~aD~vl~VvD~s~~~--s~~~ 341 (482)
T 1xzp_A 276 --GTTRDVISEEIV--I---RGILFRIVDTAGVRSETNDLVERLG-----IERTLQEIEKADIVLFVLDASSPL--DEED 341 (482)
T ss_dssp --CCSSCSCCEEEE--E---TTEEEEEEESSCCCSSCCTTCCCCC-----HHHHHHHHHHCSEEEEEEETTSCC--CHHH
T ss_pred --CeeeeeEEEEEe--c---CCeEEEEEECCCccccchhhHHHHH-----HHHHHHHhhcccEEEEEecCCCCC--CHHH
Confidence 111111111111 1 23358999999997 4322111000 234567899999999999876532 2233
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
.++...+ .+.|+++|+||+|+.+.. +..++.. . ......++.+++.+..+++++...+...
T Consensus 342 ~~il~~l--~~~piivV~NK~DL~~~~-~~~~~~~-~-~~~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 342 RKILERI--KNKRYLVVINKVDVVEKI-NEEEIKN-K-LGTDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp HHHHHHH--TTSSEEEEEEECSSCCCC-CHHHHHH-H-HTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred HHHHHHh--cCCCEEEEEECccccccc-CHHHHHH-H-hcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4444544 368999999999997542 2222211 0 1122468888888888888777766554
No 17
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.48 E-value=1.4e-13 Score=126.60 Aligned_cols=107 Identities=19% Similarity=0.163 Sum_probs=66.2
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHH-HHHHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDA-IKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~-l~l~~~~~~~~~rti~VltK~ 213 (610)
.+.|+||||.... ..+...|++.+|.+++|++..+..... ... ..+.......+.|+++|+||+
T Consensus 52 ~~~l~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 118 (167)
T 1kao_A 52 VLEILDTAGTEQF-------------ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKV 118 (167)
T ss_dssp EEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECG
T ss_pred EEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 4889999996543 556778899999999999876532110 111 123344445679999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
|+.+................+.+|+.+++.+..+++++...+.
T Consensus 119 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 119 DLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp GGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 9875332111111111122345678888877777766555443
No 18
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.47 E-value=3.5e-14 Score=153.73 Aligned_cols=159 Identities=16% Similarity=0.229 Sum_probs=81.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
.+|+++|.+|+|||||+|+|+|.++ ..++..|..
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~-----a~vs~~~gt----------------------------------------- 267 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQER-----AIVSHMPGT----------------------------------------- 267 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-----------------------------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCCCc-----------------------------------------
Confidence 4699999999999999999999864 333433311
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~ 192 (610)
+..+.... +.+ +..+++||||||+.+.... +....-..+..|++.+|.+|+|+++.+..... ...
T Consensus 268 ---T~d~~~~~--i~~---~g~~l~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~ 334 (476)
T 3gee_A 268 ---TRDYIEEC--FIH---DKTMFRLTDTAGLREAGEE-----IEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEI 334 (476)
T ss_dssp --------CEE--EEE---TTEEEEEEC-------------------------CCCSSCSEEEEEEETTTCSSGGGHHHH
T ss_pred ---eEEEEEEE--EEE---CCeEEEEEECCCCCcchhH-----HHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHH
Confidence 11111111 111 2246899999999653211 11111133567899999999999877643221 144
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHH
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
..+...+. +.|+++|+||+|+.+......+.+... . ...++.+++.+..+++++...+..
T Consensus 335 ~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~~~l~~~--~-~~~~i~vSAktg~GI~eL~~~i~~ 394 (476)
T 3gee_A 335 RELKAAHP--AAKFLTVANKLDRAANADALIRAIADG--T-GTEVIGISALNGDGIDTLKQHMGD 394 (476)
T ss_dssp HHHHHHCT--TSEEEEEEECTTSCTTTHHHHHHHHHH--H-TSCEEECBTTTTBSHHHHHHHHTH
T ss_pred HHHHHhcC--CCCEEEEEECcCCCCccchhHHHHHhc--C-CCceEEEEECCCCCHHHHHHHHHH
Confidence 45666665 689999999999976542111111111 0 146777777777777766655543
No 19
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.47 E-value=2.1e-14 Score=154.82 Aligned_cols=157 Identities=20% Similarity=0.239 Sum_probs=87.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
.+|+++|.+|+|||||+|+|+|.++ .+++..|
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~------------------------------------------- 256 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDR-----AIVTDLP------------------------------------------- 256 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHB-----SCCSCCT-------------------------------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCc-----ccccCCC-------------------------------------------
Confidence 4699999999999999999999765 3333333
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~ 194 (610)
|.+..+....+. + +..+++||||||+.+.... +....-..+..+++.+|.+|+|+++.+. . ......
T Consensus 257 -gtT~d~~~~~i~--~---~g~~v~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~VvD~s~~-~-~~~~~~ 323 (462)
T 3geh_A 257 -GTTRDVVESQLV--V---GGIPVQVLDTAGIRETSDQ-----VEKIGVERSRQAANTADLVLLTIDAATG-W-TTGDQE 323 (462)
T ss_dssp -TCCHHHHHHEEE--E---TTEEEEECC-------------------------CCCCSCSEEEEEEETTTC-S-CHHHHH
T ss_pred -CeeEEEEEEEEE--E---CCEEEEEEECCccccchhH-----HHHHHHHHHhhhhhcCCEEEEEeccCCC-C-CHHHHH
Confidence 111111111111 1 2246899999999653211 1111112355678999999999987652 2 233344
Q ss_pred HHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 195 ISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
+.+.+.. .|+++|+||+|+.+.... .. ........+++.++..+..+++.+...+...
T Consensus 324 i~~~l~~--~piivV~NK~Dl~~~~~~--~~--~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~ 381 (462)
T 3geh_A 324 IYEQVKH--RPLILVMNKIDLVEKQLI--TS--LEYPENITQIVHTAAAQKQGIDSLETAILEI 381 (462)
T ss_dssp HHHHHTT--SCEEEEEECTTSSCGGGS--TT--CCCCTTCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHhccC--CcEEEEEECCCCCcchhh--HH--HHHhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5555543 699999999999754321 11 1112234568888888887777766655443
No 20
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.46 E-value=1.9e-13 Score=129.84 Aligned_cols=126 Identities=26% Similarity=0.421 Sum_probs=79.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|+|+|.+|+|||||+|+|+|..+.+.... .|
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~----------------------------------------- 56 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSS----KP----------------------------------------- 56 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCC----CC-----------------------------------------
Confidence 578999999999999999999999865221110 00
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCC---CeEEEEeecCCCcccc
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP---NCIILAISPANQDLAT 189 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~---d~iil~v~~a~~d~~~ 189 (610)
|.+ .......+ ...+.||||||+..... +.+.......+...|+..+ |++++|++..+. .+
T Consensus 57 ---~~t----~~~~~~~~----~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~ 120 (195)
T 1svi_A 57 ---GKT----QTLNFYII----NDELHFVDVPGYGFAKV---SKSEREAWGRMIETYITTREELKAVVQIVDLRHA--PS 120 (195)
T ss_dssp ----------CCEEEEEE----TTTEEEEECCCBCCCSS---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC--CC
T ss_pred ---Cce----eeEEEEEE----CCcEEEEECCCCCcccc---CHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCC--CC
Confidence 100 00011111 12699999999765322 2333556677788888777 899999886542 22
Q ss_pred HHHHHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 190 SDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 190 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
.....+.+.+...+.|+++|+||+|+.+..
T Consensus 121 ~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 121 NDDVQMYEFLKYYGIPVIVIATKADKIPKG 150 (195)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred HHHHHHHHHHHHcCCCEEEEEECcccCChH
Confidence 333334444444678999999999998654
No 21
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.46 E-value=1.8e-13 Score=134.01 Aligned_cols=136 Identities=17% Similarity=0.220 Sum_probs=80.3
Q ss_pred CCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHH
Q 007263 25 SALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVR 104 (610)
Q Consensus 25 ~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 104 (610)
..+|......++|+|+|.+|+|||||+|+|+|..+.+.....+|+..
T Consensus 20 ~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~--------------------------------- 66 (228)
T 2qu8_A 20 QGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL--------------------------------- 66 (228)
T ss_dssp --CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE---------------------------------
T ss_pred ccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceee---------------------------------
Confidence 35565555678999999999999999999999875211111111111
Q ss_pred HHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCC
Q 007263 105 KEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN 184 (610)
Q Consensus 105 ~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~ 184 (610)
.+.........+.||||||....+... ... .....+..+...+|++|+|++..+
T Consensus 67 ----------------------~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~--~~~~~~~~~~~~~d~~i~v~d~~~ 120 (228)
T 2qu8_A 67 ----------------------YVGHFDHKLNKYQIIDTPGLLDRAFEN--RNT--IEMTTITALAHINGVILFIIDISE 120 (228)
T ss_dssp ----------------------EEEEEEETTEEEEEEECTTTTTSCGGG--CCH--HHHHHHHHHHTSSEEEEEEEETTC
T ss_pred ----------------------eeeeeecCCCeEEEEECCCCcCcccch--hhh--HHHHHHHHhhccccEEEEEEeccc
Confidence 000111122468999999996532211 000 001223456788899999998765
Q ss_pred Ccc-ccHHHHHHHHHhCCC--CCceEEEeecccCCCCC
Q 007263 185 QDL-ATSDAIKISREVDPT--GERTFGVLTKIDLMDKG 219 (610)
Q Consensus 185 ~d~-~~~~~l~l~~~~~~~--~~rti~VltK~D~~~~~ 219 (610)
... .......+...+... +.|+++|+||+|+.+..
T Consensus 121 ~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 158 (228)
T 2qu8_A 121 QCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD 158 (228)
T ss_dssp TTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--
T ss_pred ccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch
Confidence 422 223334555555543 78999999999997543
No 22
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.45 E-value=1.2e-13 Score=148.87 Aligned_cols=163 Identities=18% Similarity=0.281 Sum_probs=97.2
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
+|.|++||.+|+|||||+|+|+|..+ .++...|..
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~-----~~v~~~~g~---------------------------------------- 35 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKK-----AIVEDEEGV---------------------------------------- 35 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC---------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-----ceecCCCCC----------------------------------------
Confidence 48999999999999999999999764 223333311
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
+...... .+++ +...+.+|||||+..... ..+...+...+..|++.+|++|+|++..+ .. +....
T Consensus 36 ----T~d~~~~--~~~~---~~~~~~l~DT~G~~~~~~----~~~~~~~~~~~~~~~~~ad~il~V~D~~~-~~-~~~d~ 100 (439)
T 1mky_A 36 ----TRDPVQD--TVEW---YGKTFKLVDTCGVFDNPQ----DIISQKMKEVTLNMIREADLVLFVVDGKR-GI-TKEDE 100 (439)
T ss_dssp ------CCSEE--EEEE---TTEEEEEEECTTTTSSGG----GCCCHHHHHHHHHHHTTCSEEEEEEETTT-CC-CHHHH
T ss_pred ----ccceeeE--EEEE---CCeEEEEEECCCcccccc----chHHHHHHHHHHHHHHhCCEEEEEEECCC-CC-CHHHH
Confidence 1111100 1111 223588999999875321 22456678889999999999999998654 22 22222
Q ss_pred HHHHHhCCCCCceEEEeecccCCCC-CCcH-HHHHcCcccccCC-CeeEeeeCChhhhhccccHHHHHHHH
Q 007263 194 KISREVDPTGERTFGVLTKIDLMDK-GTDA-ADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIAARRRE 261 (610)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~-~~~~-~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~~~~~e 261 (610)
.++..+...+.++++|+||+|+.+. ..+. .+. ..++. .++.+++....+++++.+.+.....+
T Consensus 101 ~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~-----~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 101 SLADFLRKSTVDTILVANKAENLREFEREVKPEL-----YSLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHH-----GGGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHH-----HhcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 3444343457899999999998532 1111 121 23444 46777877777777777666554443
No 23
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=135.89 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc--ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (610)
..++|+|+|.+|+|||||+|+|+|..+++.+.. .+|+.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~----------------------------------- 72 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS----------------------------------- 72 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE-----------------------------------
Confidence 457999999999999999999999887444432 2333331111
Q ss_pred hhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH
Q 007263 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (610)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~ 190 (610)
+.+ +...++||||||+...... ..+....+...+..+.+.+|++|+|++....+....
T Consensus 73 -----------------~~~---~~~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~ 130 (239)
T 3lxx_A 73 -----------------SSW---KETELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEH 130 (239)
T ss_dssp -----------------EEE---TTEEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHH
T ss_pred -----------------EEe---CCceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHH
Confidence 001 1236889999999875432 233455666667777788999999998654322222
Q ss_pred HHHHHHHH-hC-CCCCceEEEeecccCCCCC
Q 007263 191 DAIKISRE-VD-PTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 191 ~~l~l~~~-~~-~~~~rti~VltK~D~~~~~ 219 (610)
..+..+.. .. ....++++|+||+|+.+..
T Consensus 131 ~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 131 KATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred HHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 23332221 11 1235899999999997643
No 24
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.44 E-value=2.1e-13 Score=150.52 Aligned_cols=166 Identities=16% Similarity=0.244 Sum_probs=100.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCC--cccccccccccEEEEEEecCCCCccceeeccCCCccc-CChHHHHHHHH
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFL--PRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRF-TDFAAVRKEIQ 108 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~l--P~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~i~ 108 (610)
...|+|+|+|.+|+|||||+|+|+|..+. +.+..++|.+.+.+. ..+.+ ... ++... .+. .
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~--~~~~~-----~i~--~g~~l~~~~-------~ 126 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVM--HGETE-----GTV--PGNALVVDP-------E 126 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEE--CCSSS-----EEE--CCC--------------
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEE--ECCcc-----ccc--CCceeeecC-------c
Confidence 36799999999999999999999999864 466666665544433 11110 000 00000 000 0
Q ss_pred HHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHH--HHHHHHHHhcCCCeEEEEeecCCCc
Q 007263 109 DETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQD--IENMVRSYIEKPNCIILAISPANQD 186 (610)
Q Consensus 109 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~--i~~~~~~yi~~~d~iil~v~~a~~d 186 (610)
.....+...+..+...++++.+.++...+++||||||+...... .+... ...++..|+..+|++|+|+++.+.+
T Consensus 127 ~~~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~----~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~ 202 (550)
T 2qpt_A 127 KPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQ----RVSRGYDFPAVLRWFAERVDLIILLFDAHKLE 202 (550)
T ss_dssp -----------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETTSCC
T ss_pred ccHHHHhhhcccccccceEEeccccccCCEEEEECcCCCCcchh----HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCC
Confidence 00011111223455666777665554457999999999763211 11111 3467788999999999999876533
Q ss_pred cccHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 187 LATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 187 ~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
.. .....++..+...+.++++|+||+|+.+.
T Consensus 203 ~~-~~~~~~l~~l~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 203 IS-DEFSEAIGALRGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp CC-HHHHHHHHHTTTCGGGEEEEEECGGGSCH
T ss_pred CC-HHHHHHHHHHHhcCCCEEEEEECCCccCH
Confidence 33 34455677777778899999999999854
No 25
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.44 E-value=1.8e-13 Score=125.47 Aligned_cols=152 Identities=18% Similarity=0.209 Sum_probs=89.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.|+|+|+|..|+|||||+|+|+|..+.+.+.. .+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 39 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL----------------------------------------- 39 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CC-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-----------------------------------------
Confidence 47899999999999999999998764111111 011100
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
....+.. +...+.|+||||..... +........+..+++.+|++|++++..+. .. ...
T Consensus 40 -------------~~~~~~~-~~~~~~l~Dt~G~~~~~------~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~-~~~ 97 (161)
T 2dyk_A 40 -------------KEGVVET-DRGRFLLVDTGGLWSGD------KWEKKIQEKVDRALEDAEVVLFAVDGRAE-LT-QAD 97 (161)
T ss_dssp -------------EEEEEEE-TTEEEEEEECGGGCSSS------SCCHHHHHHHHHHTTTCSEEEEEEESSSC-CC-HHH
T ss_pred -------------eEEEEEe-CCceEEEEECCCCCCcc------chHHHHHHHHHHHHHhCCEEEEEEECCCc-cc-HhH
Confidence 0011111 12368899999987532 13444567778899999999999987653 21 111
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCC-CeeEeeeCChhhhhcccc
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKF-PWIGVVNRSQADINKNVD 253 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~ 253 (610)
..+...+...+.|+++|+||+|+.+......++. .++. +|+.+++.+..++++...
T Consensus 98 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 154 (161)
T 2dyk_A 98 YEVAEYLRRKGKPVILVATKVDDPKHELYLGPLY-----GLGFGDPIPTSSEHARGLEELLE 154 (161)
T ss_dssp HHHHHHHHHHTCCEEEEEECCCSGGGGGGCGGGG-----GGSSCSCEECBTTTTBSHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEECcccccchHhHHHHH-----hCCCCCeEEEecccCCChHHHHH
Confidence 2222323224689999999999976532222211 2333 566666666555544433
No 26
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.44 E-value=5.6e-13 Score=126.28 Aligned_cols=161 Identities=17% Similarity=0.197 Sum_probs=92.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..|+|+|+|..|+|||||+|+|+|..+-+.+. .+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-----~~----------------------------------------- 55 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSK-----TP----------------------------------------- 55 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCS-----SC-----------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccC-----CC-----------------------------------------
Confidence 67899999999999999999999986411111 11
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCC---CeEEEEeecCCCcccc
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP---NCIILAISPANQDLAT 189 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~---d~iil~v~~a~~d~~~ 189 (610)
|.+ ....... ...++.++||||+..... +.........+...|++.+ |++++++++... ..
T Consensus 56 ---~~t----~~~~~~~----~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~--~~ 119 (195)
T 3pqc_A 56 ---GKT----RSINFYL----VNSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIP--PQ 119 (195)
T ss_dssp ---CCC----CCEEEEE----ETTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC--CC
T ss_pred ---CCc----cCeEEEE----ECCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCC--CC
Confidence 100 0000000 123688999999765321 2223445667777787766 888888876542 22
Q ss_pred HHHHHHHHHhCCCCCceEEEeecccCCCCCCc--HHHHHcCcccc-cCCCeeEeeeCChhhhhccccHH
Q 007263 190 SDAIKISREVDPTGERTFGVLTKIDLMDKGTD--AADILEGKSYR-LKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 190 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~-l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
.....+.+.+...+.|+++|+||+|+.++... ..+.+...... ....|+.+++....+++++...+
T Consensus 120 ~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 188 (195)
T 3pqc_A 120 DSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLI 188 (195)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHH
Confidence 23333444444457899999999999854321 11111111111 12356666665555555444433
No 27
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.43 E-value=2.8e-13 Score=128.76 Aligned_cols=159 Identities=14% Similarity=0.184 Sum_probs=95.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|..|+|||||+|+|++..+.+......|.-.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 53 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF----------------------------------------- 53 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEE-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE-----------------------------------------
Confidence 456899999999999999999998765222111111100
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc--cH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TS 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~--~~ 190 (610)
....+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.+.. ..
T Consensus 54 -----------~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 108 (196)
T 3tkl_A 54 -----------KIRTIEL-DGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNVK 108 (196)
T ss_dssp -----------EEEEEEE-TTEEEEEEEEEECCSGGG-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred -----------EEEEEEE-CCEEEEEEEEECCCcHhh-------------hhhHHHHHhhCCEEEEEEECcCHHHHHHHH
Confidence 0000111 001135889999996543 33467899999999999987653211 12
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHH
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
..+..+....+.+.++++|+||+|+.+................+..|+.+++....++++.+..+..
T Consensus 109 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 175 (196)
T 3tkl_A 109 QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAA 175 (196)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 2333344555567899999999999755432111111112233456777777776666665554443
No 28
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.43 E-value=7.2e-13 Score=143.55 Aligned_cols=130 Identities=17% Similarity=0.280 Sum_probs=81.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|+++|.+|+|||||+|+|+|... ..++..|
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~-----~~~~~~~----------------------------------------- 227 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEER-----VIVSNVA----------------------------------------- 227 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT-----EEECC-------------------------------------------
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCc-----cccCCCC-----------------------------------------
Confidence 568999999999999999999998764 2222222
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
|.+...... .++. +...++||||||+.+....... ....-......|++.+|++|+|+++.. .+ ....
T Consensus 228 ---gtt~~~~~~--~~~~---~~~~~~l~DT~G~~~~~~~~~~--~e~~~~~~~~~~~~~ad~~llviD~~~-~~-~~~~ 295 (456)
T 4dcu_A 228 ---GTTRDAVDT--SFTY---NQQEFVIVDTAGMRKKGKVYET--TEKYSVLRALKAIDRSEVVAVVLDGEE-GI-IEQD 295 (456)
T ss_dssp -------CTTSE--EEEE---TTEEEEETTGGGTTTBTTBCCC--CSHHHHHHHHHHHHHCSEEEEEEETTT-CC-CHHH
T ss_pred ---CeEEEEEEE--EEEE---CCceEEEEECCCCCcCcccchH--HHHHHHHHHHHHHhhCCEEEEEEeCCC-Cc-CHHH
Confidence 111111111 1111 2236899999998764322111 111111224468899999999998654 23 2344
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKGT 220 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~~ 220 (610)
..++..+...+.++++|+||+|+.+...
T Consensus 296 ~~~~~~~~~~~~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 296 KRIAGYAHEAGKAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCS
T ss_pred HHHHHHHHHcCCCEEEEEEChhcCCCch
Confidence 4566655557899999999999986543
No 29
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=2.5e-13 Score=127.13 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+|+|++..+.+.....++......
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~-------------------------------------- 50 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRN-------------------------------------- 50 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEE--------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEE--------------------------------------
Confidence 456899999999999999999999876332211111111000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-c-H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~-~ 190 (610)
..+.+ ......+.++||||.... ..++..|++.+|++|+|++..+.... . .
T Consensus 51 -------------~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 103 (180)
T 2g6b_A 51 -------------KVLDV-DGVKVKLQMWDTAGQERF-------------RSVTHAYYRDAHALLLLYDVTNKASFDNIQ 103 (180)
T ss_dssp -------------EEEEE-TTEEEEEEEEECCCC---------------------CCGGGCSEEEEEEETTCHHHHHTHH
T ss_pred -------------EEEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHccCCCEEEEEEECCCHHHHHHHH
Confidence 00011 011235889999996442 45577889999999999987653211 1 1
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+..+....+.+.|+++|+||+|+.++
T Consensus 104 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 104 AWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 2233444444567899999999999764
No 30
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.42 E-value=3e-13 Score=124.53 Aligned_cols=118 Identities=18% Similarity=0.205 Sum_probs=73.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|.+|+|||||+|+|++..+ +.....++......
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~--------------------------------------- 43 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRK--------------------------------------- 43 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEE---------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEE---------------------------------------
Confidence 35899999999999999999998765 22222111111000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~ 191 (610)
.+.+ ......+.|+||||..+. ..+...|++.+|++|+|++..+.+... ..
T Consensus 44 -------------~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (168)
T 1u8z_A 44 -------------KVVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEMESFAATAD 96 (168)
T ss_dssp -------------EEEE-TTEEEEEEEEECCC---C-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCcchh-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence 0000 111236889999996542 567788999999999999876532111 11
Q ss_pred H-HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 192 A-IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 192 ~-l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
. ..+.......+.|+++|+||+|+.+.
T Consensus 97 ~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 97 FREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 1 12333344457899999999999753
No 31
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.42 E-value=3.1e-13 Score=136.39 Aligned_cols=136 Identities=19% Similarity=0.308 Sum_probs=79.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
-+|+|||.+|+|||||+|+|+|.+.++.+...++..+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~------------------------------------------- 45 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI------------------------------------------- 45 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc-------------------------------------------
Confidence 4799999999999999999999887555432111100
Q ss_pred cCCCCccccccEEEEEecCC-CCCcEEEeCCCCCccccCC-CCCchHHHHHHHHHHHhcC-------------CCeEEEE
Q 007263 115 TGRTKQISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVEG-QPDSIVQDIENMVRSYIEK-------------PNCIILA 179 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~-~~~ltlvDtPGi~~~~~~~-q~~~~~~~i~~~~~~yi~~-------------~d~iil~ 179 (610)
..+.++. .....+...+ ...++||||||+....... .-..+...+.+....|+.. +|+++++
T Consensus 46 -~~t~~~~--~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~ 122 (274)
T 3t5d_A 46 -KKTVQVE--QSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYF 122 (274)
T ss_dssp ----CCCE--EEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEE
T ss_pred -CCceEEE--EEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEE
Confidence 0011111 1111121111 1368999999996543221 1122333334444666654 7789999
Q ss_pred eecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 180 ISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 180 v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
++++...+. .....+++.+.. +.|+|+|+||+|+...
T Consensus 123 i~~~~~~~~-~~d~~~l~~l~~-~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 123 IAPSGHGLK-PLDIEFMKRLHE-KVNIIPLIAKADTLTP 159 (274)
T ss_dssp ECSCCSSCC-HHHHHHHHHHTT-TSCEEEEESSGGGSCH
T ss_pred ecCCCCCCC-HHHHHHHHHHhc-cCCEEEEEeccCCCCH
Confidence 887764443 444557777776 8999999999999754
No 32
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.42 E-value=4.9e-13 Score=125.70 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=91.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|..|+|||||+|+|++..+ +.....++.......
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 58 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK------------------------------------- 58 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEE-------------------------------------
Confidence 456899999999999999999998765 222111111111000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~ 190 (610)
+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.+... .
T Consensus 59 ---------------~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (187)
T 2a9k_A 59 ---------------VVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEMESFAATA 109 (187)
T ss_dssp ---------------EEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEECCCCccc-------------HHHHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 000 111136889999996543 566788999999999999876532111 1
Q ss_pred HH-HHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHH
Q 007263 191 DA-IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 191 ~~-l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
.. ..+.......+.|+++|+||+|+.+......+.+.......+..|+.+++....+++++...+..
T Consensus 110 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 177 (187)
T 2a9k_A 110 DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 177 (187)
T ss_dssp HHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence 11 12333444457899999999998753221111111111122345566666655555555544433
No 33
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.42 E-value=7.7e-13 Score=123.62 Aligned_cols=126 Identities=20% Similarity=0.256 Sum_probs=75.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
-.+|+++|.+|+|||||+|+|+|..+ + .++..|
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~-~----~~~~~~------------------------------------------ 36 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREA-A----IVTDIA------------------------------------------ 36 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC-S----CCCSST------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-c----eeeCCC------------------------------------------
Confidence 35899999999999999999999764 1 111122
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-ccHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDA 192 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~~~~ 192 (610)
+.+..+.... +.+ +...+.++||||+.+... ......-..+..|++.+|.+|+|++..+... .....
T Consensus 37 --~~t~~~~~~~--~~~---~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~ 104 (172)
T 2gj8_A 37 --GTTRDVLREH--IHI---DGMPLHIIDTAGLREASD-----EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEI 104 (172)
T ss_dssp --TCCCSCEEEE--EEE---TTEEEEEEECCCCSCCSS-----HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHH
T ss_pred --CceeceeeEE--EEE---CCeEEEEEECCCcccchh-----HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH
Confidence 1111111111 111 123478999999865321 1221111224567899999999998765432 21223
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
+..+....+.+.|+++|+||+|+.+.
T Consensus 105 ~~~~~~~~~~~~p~ilv~NK~Dl~~~ 130 (172)
T 2gj8_A 105 WPEFIARLPAKLPITVVRNKADITGE 130 (172)
T ss_dssp CHHHHHHSCTTCCEEEEEECHHHHCC
T ss_pred HHHHHHhcccCCCEEEEEECccCCcc
Confidence 33344444557899999999998643
No 34
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.42 E-value=2.6e-13 Score=125.22 Aligned_cols=153 Identities=10% Similarity=0.072 Sum_probs=73.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|.+|+|||||+|+|+|..+-+......+.+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 39 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD------------------------------------------ 39 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE------------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE------------------------------------------
Confidence 46899999999999999999998764222111100000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
..+.+ ......+.++||||.... ..+...|++.+|++++|++..+.+.. ....
T Consensus 40 ------------~~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~ 92 (166)
T 3q72_A 40 ------------RSIVV-DGEEASLMVYDIWEQDGG-------------RWLPGHCMAMGDAYVIVYSVTDKGSF-EKAS 92 (166)
T ss_dssp ------------EEEEE-TTEEEEEEEEECC----------------------------CCEEEEEEETTCHHHH-HHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCccc-------------hhhhhhhhhhCCEEEEEEECCCHHHH-HHHH
Confidence 00001 111235789999997543 45567889999999999987653211 1111
Q ss_pred HHHH----HhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 194 KISR----EVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 194 ~l~~----~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
.+.. .....+.|+++|+||+|+.+......+.........+.+|+.+++.+..++++....+
T Consensus 93 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 93 ELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp HHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence 1222 2223578999999999997543211111111122233456666665555555444433
No 35
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=1.2e-13 Score=131.44 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=64.5
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.|+||||..+. ..+...|++.+|++|+|++..+.+... ...+..+....+.+.++++|+||+
T Consensus 72 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 138 (192)
T 2fg5_A 72 HKFLIWDTAGQERF-------------HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138 (192)
T ss_dssp EEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEEcCCCchhh-------------HhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 36889999996543 344678899999999999876543111 112233344445578999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
|+.+......+.+.......+..|+.+++.+..+++++...+.
T Consensus 139 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (192)
T 2fg5_A 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS 181 (192)
T ss_dssp GGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 9975322111111111122334566777766666655554443
No 36
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.42 E-value=1.9e-13 Score=126.48 Aligned_cols=155 Identities=19% Similarity=0.215 Sum_probs=86.4
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|.+|+|||||+|+|+|..+.+......+.-.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 40 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF------------------------------------------ 40 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCE------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeE------------------------------------------
Confidence 35899999999999999999998875222111111000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-c-HH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-SD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~-~~ 191 (610)
. ...+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.... . ..
T Consensus 41 --------~--~~~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (170)
T 1g16_A 41 --------K--IKTVDI-NGKKVKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDERTFTNIKQ 96 (170)
T ss_dssp --------E--EEEEES-SSCEEEEEEECCTTGGGT-------------SCCCHHHHTTEEEEEEEEETTCHHHHHTHHH
T ss_pred --------E--EEEEEE-CCEEEEEEEEeCCCChhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 0 000101 001235889999996543 22356788999999999987653211 1 12
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
.+..+....+.+.|+++|+||+|+.+....... ........+..|+.+++.+..++++....+
T Consensus 97 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 97 WFKTVNEHANDEAQLLLVGNKSDMETRVVTADQ-GEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHH-HHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECccCCcCccCHHH-HHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 233344444557899999999999433221111 111111223456666665555554444433
No 37
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.42 E-value=8.3e-13 Score=142.21 Aligned_cols=165 Identities=15% Similarity=0.253 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|++||.+|+|||||+|+|+|..+. .++..|
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~-----~~~~~~----------------------------------------- 207 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERV-----IVSNVA----------------------------------------- 207 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE-----EEC--------------------------------------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCce-----eecCCC-----------------------------------------
Confidence 4679999999999999999999998752 222222
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
|.+...... .+.. +...+.||||||+.+..... +.++..-......|++.+|++|+|+++.+. . +...
T Consensus 208 ---gtT~d~~~~--~~~~---~~~~~~l~DT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~llv~D~~~~-~-s~~~ 275 (436)
T 2hjg_A 208 ---GTTRDAVDT--SFTY---NQQEFVIVDTAGMRKKGKVY--ETTEKYSVLRALKAIDRSEVVAVVLDGEEG-I-IEQD 275 (436)
T ss_dssp ---------CCE--EEEE---TTEEEEETTHHHHTCBTTBC--CCCSHHHHHHHHHHHHHCSEEEEEEETTTC-C-CHHH
T ss_pred ---CceeeeeEE--EEEE---CCeEEEEEECCCcCcCcccc--chHHHHHHHHHHHHHHhCCEEEEEEcCCcC-C-cHHH
Confidence 111111111 1111 12358999999986543321 112221111234688999999999987653 2 2333
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCCCcH-HHH---HcC-cccccCCCeeEeeeCChhhhhccccHH
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKGTDA-ADI---LEG-KSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~~~~-~~~---l~~-~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
..++..+...+.++++|+||+|+.+..... .++ +.. .......+++.+++.+..+++++...+
T Consensus 276 ~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i 343 (436)
T 2hjg_A 276 KRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAI 343 (436)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHH
T ss_pred HHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHH
Confidence 456666555689999999999998654321 111 111 111122356666666656655544443
No 38
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.42 E-value=4.5e-13 Score=126.70 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=47.6
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhC-CCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVD-PTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~-~~~~rti~VltK~ 213 (610)
.+.|+||||.... ..+...|++.+|++|+|++..+.+... ...+..+.... ..+.|+++|+||+
T Consensus 71 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 137 (195)
T 3bc1_A 71 HLQLWDTAGLERF-------------RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKS 137 (195)
T ss_dssp EEEEEEECCSGGG-------------HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECT
T ss_pred EEEEEeCCCcHHH-------------HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 6889999997542 567889999999999999876532111 11122222222 2578999999999
Q ss_pred cCCCC
Q 007263 214 DLMDK 218 (610)
Q Consensus 214 D~~~~ 218 (610)
|+.+.
T Consensus 138 Dl~~~ 142 (195)
T 3bc1_A 138 DLEDQ 142 (195)
T ss_dssp TCGGG
T ss_pred ccccc
Confidence 99753
No 39
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.41 E-value=2.8e-13 Score=125.26 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=87.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|.+|+|||||+|+|+|..+.+.... |.-. ...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~-~~~-------------------------------------- 44 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINP--TIGA-SFM-------------------------------------- 44 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCC--CCSE-EEE--------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC--ceeE-EEE--------------------------------------
Confidence 46899999999999999999999875222111 0000 000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~ 191 (610)
...+.+ ......+.++||||..+. ..+...|++.+|++|+|++..+..... ..
T Consensus 45 -----------~~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1z0j_A 45 -----------TKTVQY-QNELHKFLIWDTAGLERF-------------RALAPMYYRGSAAAIIVYDITKEETFSTLKN 99 (170)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -----------EEEEEE-CCeEEEEEEEcCCCchhh-------------hcccHhhCcCCCEEEEEEECcCHHHHHHHHH
Confidence 000101 111235889999998543 345678899999999999876532211 12
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
.+..+......+.++++|+||+|+.+......+.........+..|+.+++....+++++.
T Consensus 100 ~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 160 (170)
T 1z0j_A 100 WVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELF 160 (170)
T ss_dssp HHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred HHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence 2233444445578899999999997543211111111112223456666655555444433
No 40
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.41 E-value=1e-12 Score=137.62 Aligned_cols=176 Identities=23% Similarity=0.289 Sum_probs=98.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..|.|+++|.+|+|||||+|+|+|..+...+...+|+-|+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~--------------------------------------- 218 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKR--------------------------------------- 218 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCE---------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEE---------------------------------------
Confidence 57889999999999999999999986522222222322211
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc--cccH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--LATS 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d--~~~~ 190 (610)
. .+.+. + ..+.++||||+... .|.+..+.++. +..++..+|.++++++.++.+ ...+
T Consensus 219 -----------~--~i~~~--g-~~v~l~DT~G~i~~----lp~~lve~f~~-tl~~~~~aD~il~VvD~s~~~~~~~~~ 277 (364)
T 2qtf_A 219 -----------Y--AIPIN--N-RKIMLVDTVGFIRG----IPPQIVDAFFV-TLSEAKYSDALILVIDSTFSENLLIET 277 (364)
T ss_dssp -----------E--EEEET--T-EEEEEEECCCBCSS----CCGGGHHHHHH-HHHGGGGSSEEEEEEETTSCHHHHHHH
T ss_pred -----------E--EEEEC--C-EEEEEEeCCCchhc----CCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCcchHHHH
Confidence 1 11121 1 35789999998652 23445555554 456789999999999876533 1111
Q ss_pred --HHHHHHHHhCCCCCceEEEeecccCCCCCCc-HHHHHcCccccc---CCCeeEeeeCChhhhhccccHHHHHHHHHhH
Q 007263 191 --DAIKISREVDPTGERTFGVLTKIDLMDKGTD-AADILEGKSYRL---KFPWIGVVNRSQADINKNVDMIAARRREREY 264 (610)
Q Consensus 191 --~~l~l~~~~~~~~~rti~VltK~D~~~~~~~-~~~~l~~~~~~l---~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~ 264 (610)
....++..+...+.++|+|.||+|+.+.+.. ....+......+ ...++.+++.+..+++.+...+.....+..+
T Consensus 278 ~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 278 LQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp HHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence 1234556666567899999999999865411 111110000011 1235666776667777766666655555545
Q ss_pred hccC
Q 007263 265 FSTT 268 (610)
Q Consensus 265 f~~~ 268 (610)
+..+
T Consensus 358 ~~~~ 361 (364)
T 2qtf_A 358 EHHH 361 (364)
T ss_dssp ----
T ss_pred CCCC
Confidence 4443
No 41
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.41 E-value=7.1e-14 Score=141.09 Aligned_cols=155 Identities=21% Similarity=0.290 Sum_probs=93.4
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
-++|+++|.+|+|||||+|+|+|..+ +.+. .|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~-----~~------------------------------------------ 34 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGN-----WA------------------------------------------ 34 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEE-----CT------------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCC-----CC------------------------------------------
Confidence 36899999999999999999999864 2221 11
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHh--cCCCeEEEEeecCCCccccHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~d~iil~v~~a~~d~~~~~ 191 (610)
|.+. +...-.+.. ....+.||||||+.+........... +.+++.|+ +.+|++|+|+++.+. ..
T Consensus 35 --g~t~----~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~ii~VvD~~~~----~~ 100 (274)
T 3i8s_A 35 --GVTV----ERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLINVVDASNL----ER 100 (274)
T ss_dssp --TSSS----EEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHH---HHHHHHHHHHTCCSEEEEEEEGGGH----HH
T ss_pred --CeeE----EEEEEEEEe-CCCceEEEECcCCCccccccccCCHH---HHHHHHHHhhcCCCEEEEEecCCCh----HH
Confidence 1110 000111111 23468899999998754322112222 33455665 799999999987752 23
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCC---cHHHHHcCcccccCCCeeEeeeCChhhhhccccH
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (610)
.+.+...+...+.|+++|+||+|+.+... +...+ ...++.+++.+++....+++++...
T Consensus 101 ~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l----~~~lg~~~i~~SA~~g~gi~el~~~ 162 (274)
T 3i8s_A 101 NLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDAL----SARLGCPVIPLVSTRGRGIEALKLA 162 (274)
T ss_dssp HHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHH----HHHHTSCEEECCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHH----HHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 33444444445799999999999864322 12121 1234456777777777766655443
No 42
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.41 E-value=6.8e-13 Score=127.03 Aligned_cols=120 Identities=19% Similarity=0.218 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+|+|++..+.+.... |. .+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~-~~~~~------------------------------------- 46 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVS--TV-GIDFK------------------------------------- 46 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCC--CC-SEEEE-------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--cc-ceeEE-------------------------------------
Confidence 457899999999999999999999875221111 10 00000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~ 190 (610)
...+.+ ......+.|+||||..+. ..+...|++.+|++|+|++..+.+... .
T Consensus 47 ------------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 100 (203)
T 1zbd_A 47 ------------VKTIYR-NDKRIKLQIWDTAGLERY-------------RTITTAYYRGAMGFILMYDITNEESFNAVQ 100 (203)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECCSGGG-------------HHHHHTTGGGCSEEEEEEETTCHHHHHHHH
T ss_pred ------------EEEEEE-CCeEEEEEEEECCCchhh-------------cchHHHhhcCCCEEEEEEECcCHHHHHHHH
Confidence 000100 111236889999997543 566788999999999999876532111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+..+......+.++++|+||+|+.+.
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 101 DWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp HHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 1222233334457899999999999754
No 43
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.41 E-value=4.2e-13 Score=127.44 Aligned_cols=120 Identities=13% Similarity=0.176 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+|+|++..+.+....+. ... ..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~--~~------------------------------------- 63 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI-GVE--FS------------------------------------- 63 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCS-SEE--EE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-cee--EE-------------------------------------
Confidence 34689999999999999999999987522211100 000 00
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~ 190 (610)
...+.+ ......+.|+||||..+. ..+...|++.+|++|+|++..+..... .
T Consensus 64 ------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~ 117 (193)
T 2oil_A 64 ------------TRTVML-GTAAVKAQIWDTAGLERY-------------RAITSAYYRGAVGALLVFDLTKHQTYAVVE 117 (193)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 000101 111235889999998653 334678899999999999876532111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+..+......+.++++|+||+|+.+.
T Consensus 118 ~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 118 RWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp HHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 1222233333457899999999999753
No 44
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.41 E-value=1.8e-13 Score=126.77 Aligned_cols=156 Identities=17% Similarity=0.120 Sum_probs=84.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+|+|++..+.+......+.-..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 44 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFL---------------------------------------- 44 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEE----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEE----------------------------------------
Confidence 3468999999999999999999987652211111110000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~-- 190 (610)
...+.+ ......+.++||||..+. ..+...|++.+|++|+|++..+.+....
T Consensus 45 ------------~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 98 (170)
T 1z08_A 45 ------------TKKLNI-GGKRVNLAIWDTAGQERF-------------HALGPIYYRDSNGAILVYDITDEDSFQKVK 98 (170)
T ss_dssp ------------EEEEES-SSCEEEEEEEECCCC--------------------CCSSTTCSEEEEEEETTCHHHHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCcHhh-------------hhhHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 000101 011235889999996442 3445678899999999998765321111
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccH
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (610)
..+..++...+.+.|+++|+||+|+.++.....+.........+..|+.+++....+++++...
T Consensus 99 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 99 NWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp HHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 1122233333346899999999999754221111111111223345666666665555544443
No 45
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.41 E-value=4.3e-13 Score=127.56 Aligned_cols=120 Identities=15% Similarity=0.233 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|..|+|||||+|+|++..+.+......+
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-------------------------------------------- 60 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG-------------------------------------------- 60 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTT--------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccc--------------------------------------------
Confidence 345899999999999999999999765211111000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-c-H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~-~ 190 (610)
.......+.+ ......+.|+||||..+. ..+...|++.+|++|+|++..+.... . .
T Consensus 61 --------~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~iilV~D~~~~~s~~~~~ 118 (192)
T 2il1_A 61 --------VDFKIKTVEL-RGKKIRLQIWDTAGQERF-------------NSITSAYYRSAKGIILVYDITKKETFDDLP 118 (192)
T ss_dssp --------EEEEEEEEEE-TTEEEEEEEEEECCSGGG-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred --------eeEEEEEEEE-CCeEEEEEEEeCCCcHHH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 0000001111 111236899999996542 56678899999999999987653211 1 1
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+..++...+.+.++++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 119 KWMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 2234455556668999999999998753
No 46
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.41 E-value=5.1e-13 Score=127.31 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=58.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCC-CCCceEEEeeccc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP-TGERTFGVLTKID 214 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~-~~~rti~VltK~D 214 (610)
..+.|+||||.... ..+...|++.+|++|+|+++.+.... .....+...+.. .+.++++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~s~-~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERY-------------ASIVPLYYRGATCAIVVFDISNSNTL-DRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGC-------------TTTHHHHHTTCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHH-HHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 36899999996543 33577899999999999987653211 222222222221 2489999999999
Q ss_pred CCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 215 LMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
.........++ .......+..|+.+++....+++++...+
T Consensus 159 ~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 198 (208)
T 3clv_A 159 KNKFQVDILEV-QKYAQDNNLLFIQTSAKTGTNIKNIFYML 198 (208)
T ss_dssp CC-CCSCHHHH-HHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred cccccCCHHHH-HHHHHHcCCcEEEEecCCCCCHHHHHHHH
Confidence 32222111111 11111223456666666555554444433
No 47
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.41 E-value=4.4e-13 Score=125.18 Aligned_cols=156 Identities=13% Similarity=0.255 Sum_probs=96.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
...++|+|+|.+|+|||||+|+|++..+.+.....+|...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---------------------------------------- 45 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI---------------------------------------- 45 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTC----------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEee----------------------------------------
Confidence 4678999999999999999999999876322211111111
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~ 191 (610)
... .+.+ +...+.|+||||..+... +...++..+|++|+|++..+. ....
T Consensus 46 ----------~~~--~~~~---~~~~~~l~Dt~G~~~~~~-------------~~~~~~~~~d~~i~v~d~~~~--~~~~ 95 (178)
T 2lkc_A 46 ----------GAY--QVTV---NDKKITFLDTPGHEAFTT-------------MRARGAQVTDIVILVVAADDG--VMPQ 95 (178)
T ss_dssp ----------CCC--EEEE---TTEEEEESCCCSSSSSSC-------------SCCSSCCCCCEEEEEEETTCC--CCHH
T ss_pred ----------eEE--EEEe---CCceEEEEECCCCHHHHH-------------HHHHHHhhCCEEEEEEECCCC--CcHH
Confidence 111 1111 123578999999765422 234678899999999975542 2345
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCC-cHHHHHcCc-ccccC----CCeeEeeeCChhhhhccccHHHH
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGT-DAADILEGK-SYRLK----FPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~-~~~~~l~~~-~~~l~----~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
.+..+..+...+.|+++|+||+|+.+... .....+... ..... ..|+.+++.+..+++++...+..
T Consensus 96 ~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 167 (178)
T 2lkc_A 96 TVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILL 167 (178)
T ss_dssp HHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHH
Confidence 55566666656789999999999986421 222222211 11111 24666777766777666655443
No 48
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.40 E-value=2.4e-13 Score=135.95 Aligned_cols=153 Identities=21% Similarity=0.301 Sum_probs=95.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
.++|+++|.+|+|||||+|+|+|..+ ..+ ..|
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~-----~~p------------------------------------------ 36 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQ-YVA-----NWP------------------------------------------ 36 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCE-EEE-----ECT------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-ccc-----CCC------------------------------------------
Confidence 46899999999999999999999864 211 111
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHh--cCCCeEEEEeecCCCccccHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~d~iil~v~~a~~d~~~~~ 191 (610)
|.+. ...... +.. ....+.||||||..+.... ... +.++..|+ ..+|++|+|+++.+. ..
T Consensus 37 --g~tv--~~~~~~--~~~-~~~~~~l~DtpG~~~~~~~----~~~---e~v~~~~~~~~~~d~ii~V~D~t~~----~~ 98 (258)
T 3a1s_A 37 --GVTV--EKKEGV--FTY-KGYTINLIDLPGTYSLGYS----SID---EKIARDYLLKGDADLVILVADSVNP----EQ 98 (258)
T ss_dssp --TSCC--EEEEEE--EEE-TTEEEEEEECCCCSSCCSS----SHH---HHHHHHHHHHSCCSEEEEEEETTSC----HH
T ss_pred --CceE--EEEEEE--EEE-CCeEEEEEECCCcCccCCC----CHH---HHHHHHHHhhcCCCEEEEEeCCCch----hh
Confidence 1111 001111 111 2246899999999765322 111 34566776 589999999987753 23
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCC---cHHHHHcCcccccCCCeeEeeeCChhhhhccccHHH
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
.+.+...+...+.|+++|+||+|+..... +...+ ...++.+++.+++.+..++++++..+.
T Consensus 99 ~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l----~~~lg~~vi~~SA~~g~gi~el~~~i~ 162 (258)
T 3a1s_A 99 SLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYEL----QKHLGIPVVFTSSVTGEGLEELKEKIV 162 (258)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHH----HHHHCSCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHH----HHHcCCCEEEEEeeCCcCHHHHHHHHH
Confidence 44455666667899999999999864321 22222 123345677777777777666655543
No 49
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.40 E-value=3.3e-13 Score=124.41 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=60.1
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-cc-HHHH-HHHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAI-KISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~-~~~l-~l~~~~~~~~~rti~VltK~ 213 (610)
.+.|+||||.... ..+...|++.+|++++|++..+... .. ...+ .+.......+.|+++|+||+
T Consensus 52 ~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 118 (167)
T 1c1y_A 52 MLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118 (167)
T ss_dssp EEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECT
T ss_pred EEEEEECCChHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECc
Confidence 5889999997553 3456788899999999998765321 11 1122 23333345679999999999
Q ss_pred cCCCCCCcHHHHHcCccccc-CCCeeEeeeCChhhhhcccc
Q 007263 214 DLMDKGTDAADILEGKSYRL-KFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l-~~g~~~v~~~s~~~~~~~~~ 253 (610)
|+.+......+......... ..+|+.+++.+..+++++..
T Consensus 119 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 119 DLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred cccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 99753321111111111111 34566666655555544443
No 50
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.40 E-value=8.9e-13 Score=141.97 Aligned_cols=158 Identities=20% Similarity=0.277 Sum_probs=93.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
.|.|++||.+|+|||||+|+|+|..+ ..+...|..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~-----~~v~~~~g~---------------------------------------- 37 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTPGV---------------------------------------- 37 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC-----C------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCCCC----------------------------------------
Confidence 58999999999999999999999765 222222211
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
+.+.....+. .....+.||||||+.... .++...+...+..|++.+|++|+|++..+. . +....
T Consensus 38 --------T~d~~~~~~~-~~~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~vvD~~~~-~-~~~d~ 101 (436)
T 2hjg_A 38 --------TRDRIYSSAE-WLNYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEADVIIFMVNGREG-V-TAADE 101 (436)
T ss_dssp -----------CEEEECT-TCSSCCEEEC--------------CHHHHHHHHHHHHHHHCSEEEEEEETTTC-S-CHHHH
T ss_pred --------ccceEEEEEE-ECCceEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEEeCCCC-C-CHHHH
Confidence 1111111111 123479999999996421 226677888899999999999999986542 2 23334
Q ss_pred HHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCC-CeeEeeeCChhhhhccccHHHH
Q 007263 194 KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
.+++.+...+.|+++|+||+|+........ ....++. .++.+++....++.++.+.+..
T Consensus 102 ~~~~~l~~~~~pvilv~NK~D~~~~~~~~~-----~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~ 161 (436)
T 2hjg_A 102 EVAKILYRTKKPVVLAVNKLDNTEMRANIY-----DFYSLGFGEPYPISGTHGLGLGDLLDAVAE 161 (436)
T ss_dssp HHHHHHTTCCSCEEEEEECCCC-----CCC-----SSGGGSSCCCEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEECccCccchhhHH-----HHHHcCCCCeEEEeCcCCCChHHHHHHHHH
Confidence 566667777899999999999875432211 1223444 4566777666666665555443
No 51
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.40 E-value=5.9e-13 Score=125.35 Aligned_cols=156 Identities=13% Similarity=0.160 Sum_probs=89.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+|+|++..+.+......+... .
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~------------------------------------- 48 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEF---G------------------------------------- 48 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEE---E-------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE---E-------------------------------------
Confidence 457999999999999999999998775222111111000 0
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~ 190 (610)
...+.+ ......+.|+||||.... ..++..|++.+|++|+|++..+.+... .
T Consensus 49 ------------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 102 (186)
T 2bme_A 49 ------------SKIINV-GGKYVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSRETYNALT 102 (186)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECCSGGG-------------HHHHHTTSTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 000101 001135889999996542 566888999999999999876532111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCCC-cHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
..+..+......+.|+++|+||+|+.+... ...+. .......+..|+.+++.+..++++....+
T Consensus 103 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (186)
T 2bme_A 103 NWLTDARMLASQNIVIILCGNKKDLDADREVTFLEA-SRFAQENELMFLETSALTGENVEEAFVQC 167 (186)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHH-HHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 122233444556789999999999964322 11111 10111223345555555555555444433
No 52
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.40 E-value=7.1e-13 Score=126.93 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=91.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|+|+|..|+|||||+|+|++..+ +.....++......
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 53 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRK-------------------------------------- 53 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEE--------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEE--------------------------------------
Confidence 457999999999999999999998764 22222111111000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~ 190 (610)
.+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.+... .
T Consensus 54 --------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 105 (206)
T 2bov_A 54 --------------KVVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEMESFAATA 105 (206)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEcCCChhhh-------------HHHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 0001 111136889999996543 566788999999999999876532111 1
Q ss_pred HHH-HHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHH
Q 007263 191 DAI-KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 191 ~~l-~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
..+ .+.......+.|+++|+||+|+.+......+.+.......+..|+.+++.+..+++++...+..
T Consensus 106 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 173 (206)
T 2bov_A 106 DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 173 (206)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 111 2333334457899999999999753221111111111122345666666665555555544433
No 53
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.40 E-value=5.9e-13 Score=124.17 Aligned_cols=155 Identities=12% Similarity=0.141 Sum_probs=89.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|..|+|||||+|+|++..+ +.....++.....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 53 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFG--------------------------------------- 53 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCTTSCCCCEE---------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceEEE---------------------------------------
Confidence 457899999999999999999998775 2211111111100
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~ 190 (610)
...+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+..... .
T Consensus 54 ------------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 107 (179)
T 1z0f_A 54 ------------TRIIEV-SGQKIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRRSTYNHLS 107 (179)
T ss_dssp ------------EEEEEE-TTEEEEEEEEECTTGGGT-------------CHHHHHHHHTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCeEEEEEEEECCCChHh-------------hhhHHHHhccCCEEEEEEeCcCHHHHHHHH
Confidence 001111 111235889999996442 456788999999999999876532111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
..+..+......+.++++|+||+|+.+......+.+.......+..|+.+++.+..++++...
T Consensus 108 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 108 SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 122234444555789999999999975332111111111112234566666655555544433
No 54
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.39 E-value=1.9e-13 Score=132.51 Aligned_cols=112 Identities=12% Similarity=0.095 Sum_probs=69.1
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.|+||||..... .+...|+..+|++|+|++..+..... ...+..+....+.+.++++|+||+
T Consensus 61 ~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (218)
T 4djt_A 61 IKFNVWDTAGQEKKA-------------VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI 127 (218)
T ss_dssp EEEEEEEECSGGGTS-------------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECT
T ss_pred EEEEEEecCCchhhc-------------hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 358899999976532 23457889999999999876532111 122233444445578999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 260 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (610)
|+.+................+..|+.+++.+..++++....+.....
T Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 128 DIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT 174 (218)
T ss_dssp TCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred CCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHh
Confidence 99764322122222222334456888888888877777666554443
No 55
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.39 E-value=7.5e-13 Score=122.60 Aligned_cols=116 Identities=15% Similarity=0.220 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+|+|++..+.+ ..|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------~~~t---------------------------------------- 38 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-------TIPT---------------------------------------- 38 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-------CCCC----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-------cCCc----------------------------------------
Confidence 45789999999999999999999876511 1110
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
.++... .+.+ +...+.++||||..+. ..+...|++.+|++|+|++..+........
T Consensus 39 ------~~~~~~--~~~~---~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 94 (171)
T 1upt_A 39 ------IGFNVE--TVTY---KNLKFQVWDLGGLTSI-------------RPYWRCYYSNTDAVIYVVDSCDRDRIGISK 94 (171)
T ss_dssp ------SSEEEE--EEEE---TTEEEEEEEECCCGGG-------------GGGGGGGCTTCSEEEEEEETTCCTTHHHHH
T ss_pred ------CccceE--EEEE---CCEEEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 000000 1111 1346899999998653 334667899999999999876543211111
Q ss_pred HHHHHHhC---CCCCceEEEeecccCCCCC
Q 007263 193 IKISREVD---PTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 193 l~l~~~~~---~~~~rti~VltK~D~~~~~ 219 (610)
..+...+. ..+.|+++|+||+|+.+..
T Consensus 95 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 95 SELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 12222222 2578999999999997653
No 56
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.39 E-value=6.6e-13 Score=125.10 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=89.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
.+|+|+|.+|+|||||+|+|++..+.+.. ..++.......
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~--------------------------------------- 44 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEY-DPTIEDSYRKQ--------------------------------------- 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCC-CTTCCEEEEEE---------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCchheEEEE---------------------------------------
Confidence 47999999999999999999987752221 11111110000
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~ 192 (610)
+. .......+.|+||||.... ..+...|++.+|++++|++..+.+... ...
T Consensus 45 -------------~~-~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 97 (189)
T 4dsu_A 45 -------------VV-IDGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHY 97 (189)
T ss_dssp -------------EE-ETTEEEEEEEEECCCC----------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHH
T ss_pred -------------EE-ECCcEEEEEEEECCCcHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHH
Confidence 00 0111224788999996543 334668889999999999876532111 111
Q ss_pred HH-HHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 193 IK-ISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 193 l~-l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
+. +.......+.|+++|+||+|+.+...... .........+..|+.+++.+..+++++...+...
T Consensus 98 ~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 163 (189)
T 4dsu_A 98 REQIKRVKDSEDVPMVLVGNKCDLPSRTVDTK-QAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163 (189)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTSSSCSSCHH-HHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEECccCcccccCHH-HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 11 23334455789999999999975432211 1111122234567777776666666655554433
No 57
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.39 E-value=3.8e-13 Score=125.70 Aligned_cols=157 Identities=14% Similarity=0.164 Sum_probs=89.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|+|+|..|+|||||+|+|++..+ +.....++......
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 48 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTK-------------------------------------- 48 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEE--------------------------------------
Confidence 457999999999999999999999864 22211111111000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~-- 190 (610)
.+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.+....
T Consensus 49 --------------~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (181)
T 2fn4_A 49 --------------ICSV-DGIPARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLVFAINDRQSFNEVG 100 (181)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEEEeCCCHHHHHHHH
Confidence 0000 001135789999997653 2335678889999999998765321111
Q ss_pred HHH-HHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHH
Q 007263 191 DAI-KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 191 ~~l-~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
..+ .+.+.....+.++++|+||+|+.+...-............+..|+.+++....++++....+.
T Consensus 101 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 167 (181)
T 2fn4_A 101 KLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 167 (181)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 111 233444566789999999999975322111111111112234556666655555554444433
No 58
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=1.8e-12 Score=122.53 Aligned_cols=152 Identities=12% Similarity=0.168 Sum_probs=88.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+|+|++..+. .. .|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~-----~~----------------------------------------- 46 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--HT-----SP----------------------------------------- 46 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--EE-----EC-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--cC-----cC-----------------------------------------
Confidence 4579999999999999999999987651 10 11
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+.++.... +.+ +...+.++||||..+. ..+...|++.+|++|+|++..+.+.. ...
T Consensus 47 -----t~~~~~~~--~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~-~~~ 102 (187)
T 1zj6_A 47 -----TIGSNVEE--IVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTDRERI-SVT 102 (187)
T ss_dssp -----CSCSSCEE--EEE---TTEEEEEEECCC-----------------CGGGHHHHTTCCEEEEEEETTCTTTH-HHH
T ss_pred -----CCccceEE--EEE---CCEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHHHH-HHH
Confidence 00111111 111 2246899999998543 33467889999999999987664311 122
Q ss_pred HHHHHHh-C---CCCCceEEEeecccCCCCCC--cHHHHHcCc-ccccCCCeeEeeeCChhhhhccccHHH
Q 007263 193 IKISREV-D---PTGERTFGVLTKIDLMDKGT--DAADILEGK-SYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 193 l~l~~~~-~---~~~~rti~VltK~D~~~~~~--~~~~~l~~~-~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
..+...+ . ..+.++++|+||+|+.+... +..+.+... ....+..|+.+++.+..+++++...+.
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (187)
T 1zj6_A 103 REELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 173 (187)
T ss_dssp HHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHH
Confidence 2222222 2 25799999999999975432 122222111 112233566666666666665555443
No 59
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.39 E-value=5.4e-13 Score=128.61 Aligned_cols=161 Identities=20% Similarity=0.221 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|+|+|.+|+|||||+|+|+|..+.+.....++.-.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 57 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF----------------------------------------- 57 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCE-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-----------------------------------------
Confidence 567999999999999999999998775222111111100
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-cc-H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~-~ 190 (610)
.. ..+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.+. .. .
T Consensus 58 ---------~~--~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 112 (213)
T 3cph_A 58 ---------KI--KTVDI-NGKKVKLQLWDTAGQERF-------------RTITTAYYRGAMGIILVYDVTDERTFTNIK 112 (213)
T ss_dssp ---------EE--EEEEE-TTEEEEEEEECCTTGGGG-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred ---------EE--EEEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 00 00111 001135899999996543 2335788999999999998765321 11 1
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHHH
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 260 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (610)
..+..+....+.+.|+++|+||+|+......... ........+..|+.+++....+++.+...+.....
T Consensus 113 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 113 QWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQ-GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp HHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHH-HHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCcccccCHHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2333344444557899999999999433221111 11111122346777777766666666655544433
No 60
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.39 E-value=1.3e-12 Score=141.59 Aligned_cols=157 Identities=19% Similarity=0.280 Sum_probs=91.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
...|.|++||.+|+|||||+|+|+|..+ +.+...|
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~-----~~v~~~~---------------------------------------- 55 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTP---------------------------------------- 55 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEE-----C----------------------------------------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCC----------------------------------------
Confidence 3579999999999999999999999765 2222222
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHH
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~ 191 (610)
| ++.+.....+.. ....+++|||||+... .+.+...+...+..|++.+|++|++++... . .+..
T Consensus 56 ----g----~t~~~~~~~~~~-~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~VvD~~~-~-~~~~ 119 (456)
T 4dcu_A 56 ----G----VTRDRIYSSAEW-LNYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADVIIFMVNGRE-G-VTAA 119 (456)
T ss_dssp -------------CEEEECTT-CSSCCEEECCCC-----------CCHHHHHHHHHHHHHHCSEEEEEEESSS-C-SCHH
T ss_pred ----C----cceeEEEEEEEE-CCceEEEEECCCCCCc-----chHHHHHHHHHHHhhHhhCCEEEEEEeCCC-C-CChH
Confidence 1 111111111111 2347999999998742 233677888899999999999999998543 2 2344
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCC-eeEeeeCChhhhhccccH
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKNVDM 254 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~ 254 (610)
...+++.+...+.++++|+||+|+.+..... ...+.++.| .+.+++....++.++...
T Consensus 120 d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~-----~e~~~lg~~~~~~iSA~~g~gv~~L~~~ 178 (456)
T 4dcu_A 120 DEEVAKILYRTKKPVVLAVNKLDNTEMRANI-----YDFYSLGFGEPYPISGTHGLGLGDLLDA 178 (456)
T ss_dssp HHHHHHHHTTCCSCEEEEEECC--------------CCSGGGSSSSEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEECccchhhhhhH-----HHHHHcCCCceEEeecccccchHHHHHH
Confidence 4567777777899999999999987543211 112333332 344555544555444433
No 61
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.39 E-value=3.1e-13 Score=135.98 Aligned_cols=151 Identities=23% Similarity=0.355 Sum_probs=93.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
.++|+++|.+|+|||||+|+|+|..+. +...|
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~------v~~~p------------------------------------------ 34 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR------VGNWP------------------------------------------ 34 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC------CCSSS------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc------ccCCC------------------------------------------
Confidence 468999999999999999999997531 11122
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc--CCCeEEEEeecCCCccccHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~d~iil~v~~a~~d~~~~~ 191 (610)
|.+ .......+.. ...+.+|||||..+..... .. +.++..|+. .+|++|+|+++.+. ..
T Consensus 35 --g~t----v~~~~~~~~~--~~~l~l~DtpG~~~~~~~~----~~---e~v~~~~~~~~~~d~vi~V~D~t~~----e~ 95 (272)
T 3b1v_A 35 --GVT----VERKSGLVKK--NKDLEIQDLPGIYSMSPYS----PE---AKVARDYLLSQRADSILNVVDATNL----ER 95 (272)
T ss_dssp --CCC----CSCEEEECTT--CTTEEEEECCCCSCSSCSS----HH---HHHHHHHHHTTCCSEEEEEEEGGGH----HH
T ss_pred --CCc----EEEEEEEEec--CCeEEEEECCCcCccCCCC----hH---HHHHHHHHhcCCCCEEEEEecCCch----Hh
Confidence 111 0011111222 3579999999987653221 11 455677775 69999999987652 22
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCCC---CcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDKG---TDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~~---~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
.+.+..++...+.|+++|+||+|+.... .+...+ ...++.+++.++.....++++++..+
T Consensus 96 ~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l----~~~lg~~vi~~SA~~g~gi~el~~~i 158 (272)
T 3b1v_A 96 NLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKL----SYHLGVPVVATSALKQTGVDQVVKKA 158 (272)
T ss_dssp HHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHH----HHHHTSCEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHH----HHHcCCCEEEEEccCCCCHHHHHHHH
Confidence 3344444444689999999999986422 122222 12234567777777777766655544
No 62
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.39 E-value=5.2e-13 Score=123.33 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=47.0
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH---HHHHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA---IKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~---l~l~~~~~~~~~rti~VltK~ 213 (610)
.+.++||||.... ..+...|++.+|++|+|++..+.... ... +..+......+.++++|+||+
T Consensus 53 ~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~piilv~nK~ 118 (170)
T 1ek0_A 53 KFEIWDTAGQERF-------------ASLAPXYYRNAQAALVVYDVTKPQSF-IKARHWVKELHEQASKDIIIALVGNKI 118 (170)
T ss_dssp EEEEEEECCSGGG-------------GGGHHHHHTTCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEECCCChhh-------------hhhhhhhhccCcEEEEEEecCChHHH-HHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 5889999996543 34577889999999999987653211 122 222223334578999999999
Q ss_pred cCCCC
Q 007263 214 DLMDK 218 (610)
Q Consensus 214 D~~~~ 218 (610)
|+.+.
T Consensus 119 Dl~~~ 123 (170)
T 1ek0_A 119 DXLQE 123 (170)
T ss_dssp GGGGS
T ss_pred Ccccc
Confidence 99754
No 63
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.38 E-value=7.8e-13 Score=122.99 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|++|+|||||+|+|+|..+-+.... +
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~-----~----------------------------------------- 36 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ-----L----------------------------------------- 36 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCC-----S-----------------------------------------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCc-----c-----------------------------------------
Confidence 357899999999999999999999865211110 0
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
| .......+.+ ......+.++||||..... ...+...|++.+|++|+|++..+.+.. ...
T Consensus 37 ---~----~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~ 96 (175)
T 2nzj_A 37 ---G----EDVYERTLTV-DGEDTTLVVVDTWEAEKLD-----------KSWSQESCLQGGSAYVIVYSIADRGSF-ESA 96 (175)
T ss_dssp ---S----SSEEEEEEEE-TTEEEEEEEECCC------------------CHHHHHTTTSCSEEEEEEETTCHHHH-HHH
T ss_pred ---c----cceeEEEEEE-CCEEEEEEEEecCCCCccc-----------hhhhHHhhcccCCEEEEEEECCCHHHH-HHH
Confidence 0 0000001111 1112357899999975421 134556788999999999987653211 111
Q ss_pred HHH---HHHh-CCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 193 IKI---SREV-DPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 193 l~l---~~~~-~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
..+ +... ...+.|+++|+||+|+.+...-..+.........+..|+.+++.+..+++++...+
T Consensus 97 ~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 163 (175)
T 2nzj_A 97 SELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGV 163 (175)
T ss_dssp HHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 122 2222 23478999999999997543211111111111223456666665555555444433
No 64
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.38 E-value=1.1e-12 Score=120.30 Aligned_cols=104 Identities=14% Similarity=0.190 Sum_probs=60.5
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHH-HHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIK-ISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~-l~~~~~~~~~rti~VltK~ 213 (610)
.+.++||||..+. ..+...|+..+|+++++++..+.+... ...+. +.......+.|+++|+||+
T Consensus 52 ~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~ 118 (166)
T 2ce2_X 52 LLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKS 118 (166)
T ss_dssp EEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECT
T ss_pred EEEEEECCCchhh-------------hHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEch
Confidence 5789999997543 345678889999999999876432111 11112 2222233478999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (610)
|+.+....... ........+.+++.++..+..++++....
T Consensus 119 Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 158 (166)
T 2ce2_X 119 DLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYT 158 (166)
T ss_dssp TCSCCCSCHHH-HHHHHHHHTCCEEEECTTTCTTHHHHHHH
T ss_pred hhhhcccCHHH-HHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 98763322111 11111223345666666655555444433
No 65
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.38 E-value=5.6e-13 Score=126.22 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=74.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|.+|+|||||+|+|++..+.+...... .+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~-------------------------------------- 60 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV---GIDFK-------------------------------------- 60 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC---CCEEE--------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCce---eEEEE--------------------------------------
Confidence 4589999999999999999999887522211100 00000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-c-HH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-SD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~-~~ 191 (610)
...+.+ ......+.|+||||..... .+...|++.+|++|+|++..+.+.. . ..
T Consensus 61 -----------~~~~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 115 (189)
T 2gf9_A 61 -----------VKTVYR-HDKRIKLQIWDTAGQERYR-------------TITTAYYRGAMGFLLMYDIANQESFAAVQD 115 (189)
T ss_dssp -----------EEEEEE-TTEEEEEEEEECCSCCSSC-------------CSGGGGGTTCSEEEEEEETTCHHHHHTHHH
T ss_pred -----------EEEEEE-CCeEEEEEEEeCCCcHHHh-------------hhHHHhccCCCEEEEEEECCCHHHHHHHHH
Confidence 000101 1112368899999975532 2356789999999999987653211 1 11
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
.+..+......+.++++|+||+|+.+.
T Consensus 116 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 116 WATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccc
Confidence 222333444457899999999999753
No 66
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=8.6e-13 Score=126.73 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=90.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+++|++..+ +...+.+.-.. ..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~--~~------------------------------------- 64 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVD--FM------------------------------------- 64 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEE--EE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCcccee--EE-------------------------------------
Confidence 346899999999999999999998765 32221111000 00
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~ 190 (610)
...+.+ ......+.|+||||..+. ..+...|++.+|++|+|++..+.+... .
T Consensus 65 ------------~~~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~ 118 (201)
T 2ew1_A 65 ------------IKTVEI-NGEKVKLQIWDTAGQERF-------------RSITQSYYRSANALILTYDITCEESFRCLP 118 (201)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECCSGGG-------------HHHHGGGSTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 000111 011135889999996442 566788999999999999876532111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
..+..+....+.+.++++|+||+|+.+......+.........+..|+.+++.+..+++++...+
T Consensus 119 ~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 119 EWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183 (201)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 23333444555678999999999997432211111111111223456666665555555444433
No 67
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=6.8e-13 Score=122.76 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=59.7
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-c-HHHHHHHHHhC--CCCCceEEEeec
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-SDAIKISREVD--PTGERTFGVLTK 212 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~-~~~l~l~~~~~--~~~~rti~VltK 212 (610)
.+.++||||..+. ..+...|++.+|++|+|++..+.... . ...+..+.... ..+.|+++|+||
T Consensus 52 ~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK 118 (172)
T 2erx_A 52 TLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK 118 (172)
T ss_dssp EEEEEECCSCSSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEEC
T ss_pred EEEEEECCCchhh-------------HHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEc
Confidence 5889999997653 46677889999999999987653211 1 11222233322 136899999999
Q ss_pred ccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
+|+.+................+.+|+.+++.+..+++++..
T Consensus 119 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (172)
T 2erx_A 119 CDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159 (172)
T ss_dssp GGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred cccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence 99875432111111111112234566666665555544443
No 68
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.37 E-value=4.2e-13 Score=125.18 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=59.2
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-cc-HHHHHHHHHhCCCCCceEEEeeccc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~-~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
.+.|+||||.... ..+...|++.+|++|+|++..+... .. ...+..+....+.+.++++|+||+|
T Consensus 64 ~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 130 (179)
T 2y8e_A 64 RLQLWDTAGQERF-------------RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 130 (179)
T ss_dssp EEEEEEECCSGGG-------------GGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGG
T ss_pred EEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCc
Confidence 5889999996543 3346688899999999998765321 11 1122222333345789999999999
Q ss_pred CCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 215 LMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
+.++...............+..|+.+++....+++...
T Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 168 (179)
T 2y8e_A 131 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168 (179)
T ss_dssp GGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred ccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 97543211111111111223456666666555544433
No 69
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.37 E-value=9.3e-13 Score=123.73 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=90.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|..|+|||||+|+|++..+ +.....++.... ..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~-~~------------------------------------- 57 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSY-LK------------------------------------- 57 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEE-EE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCcccee-EE-------------------------------------
Confidence 445899999999999999999998764 222222111110 00
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-c-H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~-~ 190 (610)
.+ ........+.++||||.... ..+...|++.+|++|+|++..+.... . .
T Consensus 58 --------------~~-~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (183)
T 3kkq_A 58 --------------HT-EIDNQWAILDVLDTAGQEEF-------------SAMREQYMRTGDGFLIVYSVTDKASFEHVD 109 (183)
T ss_dssp --------------EE-EETTEEEEEEEEECCSCGGG-------------CSSHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EE-EeCCcEEEEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 00 00111124678999996543 23456788899999999987653211 1 1
Q ss_pred HHH-HHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeC-ChhhhhccccHH
Q 007263 191 DAI-KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNR-SQADINKNVDMI 255 (610)
Q Consensus 191 ~~l-~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~-s~~~~~~~~~~~ 255 (610)
..+ .+.+.....+.|+++|+||+|+.+......+.........+..|+.+++. +..++++.+..+
T Consensus 110 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l 176 (183)
T 3kkq_A 110 RFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176 (183)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHH
Confidence 111 23333455678999999999987533221111111122334567777776 555555544443
No 70
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.37 E-value=7.9e-13 Score=126.98 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+|+|++..+ +......+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~----------------------------------------- 44 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVD----------------------------------------- 44 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCC-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccce-----------------------------------------
Confidence 457899999999999999999998765 22111100000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~-- 190 (610)
+.. ..+.+ ......+.|+||||..+. ..+...|++.+|++|+|++..+.+....
T Consensus 45 --------~~~--~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~vilv~d~~~~~s~~~~~ 100 (206)
T 2bcg_Y 45 --------FKI--KTVEL-DGKTVKLQIWDTAGQERF-------------RTITSSYYRGSHGIIIVYDVTDQESFNGVK 100 (206)
T ss_dssp --------EEE--EEEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGGTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------eEE--EEEEE-CCEEEEEEEEeCCChHHH-------------HHHHHHhccCCCEEEEEEECcCHHHHHHHH
Confidence 000 01111 111236899999997553 2235678999999999998765321111
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+..+......+.++++|+||+|+.+.
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 101 MWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 1222333444557899999999999754
No 71
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.37 E-value=1.2e-12 Score=122.61 Aligned_cols=155 Identities=13% Similarity=0.154 Sum_probs=87.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+|+|++..+.+......+ ..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~----------------------------------------- 48 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG-AA----------------------------------------- 48 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSC-CS-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCce-eE-----------------------------------------
Confidence 345899999999999999999998775221111000 00
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~ 190 (610)
+. ...+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+..... .
T Consensus 49 --------~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 104 (181)
T 2efe_B 49 --------FF--SQTLAV-NDATVKFEIWDTAGQERY-------------HSLAPMYYRGAAAAIIVFDVTNQASFERAK 104 (181)
T ss_dssp --------EE--EEEEEE-TTEEEEEEEEECCCSGGG-------------GGGTHHHHTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------EE--EEEEEE-CCEEEEEEEEeCCCChhh-------------hhhhHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 00 000111 111236899999996543 344678899999999999876432111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
..+..+......+.++++|+||+|+.+......+.+.......+..|+.+++.+..+++++..
T Consensus 105 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 105 KWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 122223333334789999999999975432111111111112234566666665555554443
No 72
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.37 E-value=2.2e-13 Score=127.42 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=71.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|+|+|.+|+|||||+|+|+|..+.+......|...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~----------------------------------------- 46 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF----------------------------------------- 46 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEE-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEE-----------------------------------------
Confidence 568999999999999999999999875211111111000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
....+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.... ...
T Consensus 47 -----------~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~ 100 (181)
T 3tw8_B 47 -----------KIRTVEI-NGEKVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDVTSAESF-VNV 100 (181)
T ss_dssp -----------EEEEEEE-TTEEEEEEEEEETTGGGC-------------SSCCGGGGTTCSEEEEEEETTCHHHH-HHH
T ss_pred -----------EEEEEEE-CCEEEEEEEEcCCCchhh-------------hhhHHHHhccCCEEEEEEECCCHHHH-HHH
Confidence 0000111 001135889999996543 22355788999999999987653211 111
Q ss_pred HHHHHHhC--CCCCceEEEeecccCCCC
Q 007263 193 IKISREVD--PTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~--~~~~rti~VltK~D~~~~ 218 (610)
..+...+. ..+.|+++|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 101 KRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp HHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred HHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 12222221 236899999999998653
No 73
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.37 E-value=1e-12 Score=125.99 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=63.9
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-cc-HHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~-~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.|+||||..+. ..+...|++.+|++|+|++..+.+. .. ...+..+....+.+.++++|+||+
T Consensus 78 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~ 144 (201)
T 2hup_A 78 VKLQIWDTAGQERF-------------RTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKS 144 (201)
T ss_dssp EEEEEECCTTCGGG-------------HHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEEECCCcHhH-------------HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 36889999997542 5678889999999999998765321 11 122223333344578999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCC-CeeEeeeCChhhhhccccHHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~ 256 (610)
|+.+......+.+.......+. .|+.+++....++++....+.
T Consensus 145 Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 188 (201)
T 2hup_A 145 DLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 188 (201)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9975322111111111112233 556666666555555554443
No 74
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.36 E-value=2e-12 Score=123.02 Aligned_cols=155 Identities=12% Similarity=0.147 Sum_probs=89.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|+|+|..|+|||||+++|++..+-...... |.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~------------------------------------------- 51 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TV------------------------------------------- 51 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CS-------------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-cc-------------------------------------------
Confidence 5679999999999999999999998752211111 10
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
++.... + ......+.|+||||.... ..+...|++.+|++|+|++..+.+.. ...
T Consensus 52 -------~~~~~~----~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~s~-~~~ 105 (199)
T 4bas_A 52 -------GYNVET----F-EKGRVAFTVFDMGGAKKF-------------RGLWETYYDNIDAVIFVVDSSDHLRL-CVV 105 (199)
T ss_dssp -------SEEEEE----E-EETTEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEETTCGGGH-HHH
T ss_pred -------ceeEEE----E-EeCCEEEEEEECCCCHhH-------------HHHHHHHHhcCCEEEEEEECCcHHHH-HHH
Confidence 000000 1 112346899999998653 34566889999999999987754321 112
Q ss_pred HHHHHHhCC-----------CCCceEEEeecccCCCCCC--cHHHHHcCcc--cccCCCeeEeeeCChhhhhccccHHHH
Q 007263 193 IKISREVDP-----------TGERTFGVLTKIDLMDKGT--DAADILEGKS--YRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 193 l~l~~~~~~-----------~~~rti~VltK~D~~~~~~--~~~~~l~~~~--~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
..+...+.. .+.++++|+||+|+..... +..+.+.... ...+..|+.+++....++++++..+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 185 (199)
T 4bas_A 106 KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQE 185 (199)
T ss_dssp HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHH
Confidence 122222211 2789999999999986532 1112211000 112334555666555555555544433
No 75
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.36 E-value=2.4e-12 Score=118.44 Aligned_cols=69 Identities=16% Similarity=0.295 Sum_probs=48.5
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHh----CCCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV----DPTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~----~~~~~rti~Vlt 211 (610)
..+.++||||..+. +.+...|++.+|++|+|++..+.+.. .....+...+ ...+.|+++|+|
T Consensus 44 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piilv~n 109 (164)
T 1r8s_A 44 ISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRERV-NEAREELMRMLAEDELRDAVLLVFAN 109 (164)
T ss_dssp CEEEEEECCCCGGG-------------HHHHHHHTTTCSEEEEEEETTCGGGH-HHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EEEEEEEcCCChhh-------------HHHHHHHhccCCEEEEEEECCCHHHH-HHHHHHHHHHHhchhhcCCeEEEEEE
Confidence 46899999998542 56778899999999999987654211 1222222222 224789999999
Q ss_pred cccCCCC
Q 007263 212 KIDLMDK 218 (610)
Q Consensus 212 K~D~~~~ 218 (610)
|+|+.+.
T Consensus 110 K~Dl~~~ 116 (164)
T 1r8s_A 110 KQDLPNA 116 (164)
T ss_dssp CTTSTTC
T ss_pred CcCCcCC
Confidence 9999754
No 76
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.36 E-value=7.8e-13 Score=125.48 Aligned_cols=118 Identities=18% Similarity=0.244 Sum_probs=73.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|.+|+|||||+|+|++..+.+......+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-------------------------------------------- 56 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV-------------------------------------------- 56 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCS--------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccc--------------------------------------------
Confidence 448999999999999999999987652221111000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~ 191 (610)
.+.. ..+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.+... ..
T Consensus 57 ------~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 114 (191)
T 2a5j_A 57 ------EFGA--RMVNI-DGKQIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLTS 114 (191)
T ss_dssp ------SEEE--EEEEE-TTEEEEEEEECCTTGGGT-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred ------eeEE--EEEEE-CCEEEEEEEEECCCchhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 0000 01111 111236889999996543 223568899999999999876532111 12
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCC
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
.+..+......+.++++|+||+|+.+
T Consensus 115 ~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 115 WLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHhcCCCCCEEEEEECcccCC
Confidence 22233333455789999999999964
No 77
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=6.3e-13 Score=126.12 Aligned_cols=155 Identities=15% Similarity=0.169 Sum_probs=89.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|..|+|||||+|+|++..+.+......+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 57 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG-------------------------------------------- 57 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEET--------------------------------------------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCee--------------------------------------------
Confidence 566899999999999999999998765221110000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~ 190 (610)
.......+.+ ......+.|+||||... ...+...|++.+|++|+|++..+.+... .
T Consensus 58 --------~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 115 (191)
T 3dz8_A 58 --------IDFKVKTVYR-HEKRVKLQIWDTAGQER-------------YRTITTAYYRGAMGFILMYDITNEESFNAVQ 115 (191)
T ss_dssp --------TTEEEEEEEE-TTTTEEEEEECHHHHHH-------------CHHHHHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred --------eEEEEEEEEE-CCEEEEEEEEeCCChHH-------------HHHHHHHHHccCCEEEEEEECcCHHHHHHHH
Confidence 0000001111 11223589999999433 2667889999999999999876532111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
..+..+......+.++++|+||+|+.+......+.........+..|+.+++....++++.+.
T Consensus 116 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 116 DWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 233334444556799999999999864322111111111122234555555555544444443
No 78
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.36 E-value=1.3e-12 Score=123.73 Aligned_cols=154 Identities=15% Similarity=0.186 Sum_probs=88.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|..|+|||||+|+|+|..+++..... |.-
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~-t~~------------------------------------------ 56 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILP-TIG------------------------------------------ 56 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCC-CSS------------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCC-ccc------------------------------------------
Confidence 4568999999999999999999997632322111 111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~-- 190 (610)
+... .+.+ +...+.|+||||.... ..+...|++.+|++|+|++..+.+....
T Consensus 57 --------~~~~--~~~~---~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 110 (190)
T 2h57_A 57 --------FSIE--KFKS---SSLSFTVFDMSGQGRY-------------RNLWEHYYKEGQAIIFVIDSSDRLRMVVAK 110 (190)
T ss_dssp --------EEEE--EEEC---SSCEEEEEEECCSTTT-------------GGGGGGGGGGCSEEEEEEETTCHHHHHHHH
T ss_pred --------eeEE--EEEE---CCEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 1000 1111 1257899999996553 3445688999999999998765321111
Q ss_pred HHH-HHHHHhCC--CCCceEEEeecccCCCCCC--cHHHHHcCcc-cccCCCeeEeeeCChhhhhccccHH
Q 007263 191 DAI-KISREVDP--TGERTFGVLTKIDLMDKGT--DAADILEGKS-YRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 191 ~~l-~l~~~~~~--~~~rti~VltK~D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
..+ .+...... .+.++++|+||+|+.+... +..+.+.-.. ...+..|+.+++.+..+++++...+
T Consensus 111 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 181 (190)
T 2h57_A 111 EELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWL 181 (190)
T ss_dssp HHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred HHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHH
Confidence 111 12222121 4789999999999976432 1222222111 1123345666666555555444433
No 79
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.36 E-value=9.9e-13 Score=124.47 Aligned_cols=147 Identities=15% Similarity=0.196 Sum_probs=85.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|..|+|||||+|+|++..+.+......+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~------------------------------------------- 55 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV------------------------------------------- 55 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC-------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce-------------------------------------------
Confidence 4568999999999999999999987652211111000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHH-HHHHHHhcCCCeEEEEeecCCCccc-c-
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIE-NMVRSYIEKPNCIILAISPANQDLA-T- 189 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~-~~~~~yi~~~d~iil~v~~a~~d~~-~- 189 (610)
.+. ...+.+ ......+.|+||||..+. . .++..|++.+|++|+|++..+.... .
T Consensus 56 -------~~~--~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~ 112 (189)
T 1z06_A 56 -------DFR--ERAVDI-DGERIKIQLWDTAGQERF-------------RKSMVQHYYRNVHAVVFVYDMTNMASFHSL 112 (189)
T ss_dssp -------CEE--EEEEEE-TTEEEEEEEEECCCSHHH-------------HTTTHHHHHTTCCEEEEEEETTCHHHHHTH
T ss_pred -------EEE--EEEEEE-CCEEEEEEEEECCCchhh-------------hhhhhHHHhcCCCEEEEEEECcCHHHHHHH
Confidence 000 001111 111236899999996432 3 5678899999999999987653211 1
Q ss_pred HHHHH-HHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCCh
Q 007263 190 SDAIK-ISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQ 245 (610)
Q Consensus 190 ~~~l~-l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~ 245 (610)
...+. +.+.....+.++++|+||+|+.+......+.........+..|+.+++.+.
T Consensus 113 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 113 PAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP 169 (189)
T ss_dssp HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcC
Confidence 11222 333344567999999999999754221111111111223446676666665
No 80
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.36 E-value=5e-13 Score=123.28 Aligned_cols=118 Identities=20% Similarity=0.236 Sum_probs=71.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|.+|+|||||+|+|++..+ +.....++...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~------------------------------------------ 41 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVD------------------------------------------ 41 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSS------------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEE------------------------------------------
Confidence 46899999999999999999998764 22111110000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-cc-HH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SD 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~-~~ 191 (610)
+. ...+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.+. .. ..
T Consensus 42 -------~~--~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 98 (168)
T 1z2a_A 42 -------FL--ERQIQV-NDEDVRLMLWDTAGQEEF-------------DAITKAYYRGAQACVLVFSTTDRESFEAISS 98 (168)
T ss_dssp -------EE--EEEEEE-TTEEEEEEEECCTTGGGT-------------TCCCHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred -------EE--EEEEEE-CCEEEEEEEEcCCCcHhH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence 00 001111 111236889999996543 2346688999999999998765321 11 11
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
.+..+.... .+.|+++|+||+|+.++
T Consensus 99 ~~~~i~~~~-~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 99 WREKVVAEV-GDIPTALVQNKIDLLDD 124 (168)
T ss_dssp HHHHHHHHH-CSCCEEEEEECGGGGGG
T ss_pred HHHHHHHhC-CCCCEEEEEECcccCcc
Confidence 111122211 36899999999998753
No 81
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.36 E-value=6.3e-13 Score=124.66 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=92.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|+|+|.+|+|||||+|+|++..+ +.....++.... ..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~-~~------------------------------------- 45 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTF-TK------------------------------------- 45 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEE-EE-------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccE-EE-------------------------------------
Confidence 357899999999999999999997654 222221111111 00
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~-- 190 (610)
.+.+ ......+.|+||||..... .+...|++.+|++|+|++..+.+....
T Consensus 46 --------------~~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 97 (181)
T 3t5g_A 46 --------------LITV-NGQEYHLQLVDTAGQDEYS-------------IFPQTYSIDINGYILVYSVTSIKSFEVIK 97 (181)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCCCTTC-------------CCCGGGTTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEeCCCchhhh-------------HHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 0000 1111357899999976642 234578899999999998765321111
Q ss_pred HH-HHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 191 DA-IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 191 ~~-l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
.. ..+.......+.|+++|+||+|+.+......+.........+..|+.+++.+..++++.+..+...
T Consensus 98 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 166 (181)
T 3t5g_A 98 VIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166 (181)
T ss_dssp HHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 11 123344445578999999999986543321111121223334567888888777777666555443
No 82
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.36 E-value=1.7e-12 Score=120.95 Aligned_cols=103 Identities=13% Similarity=0.209 Sum_probs=61.5
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHh-C---CCCCceEEEe
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREV-D---PTGERTFGVL 210 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~-~---~~~~rti~Vl 210 (610)
.+.|+||||.... ..+...|++.+|++|+|++..+..... ...+...... . ..+.|+++|+
T Consensus 57 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~ 123 (177)
T 1wms_A 57 TMQIWDTAGQERF-------------RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123 (177)
T ss_dssp EEEEEECCCCGGG-------------HHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEE
T ss_pred EEEEEeCCCchhh-------------hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEE
Confidence 5889999996542 566778999999999999876532111 1111112211 1 2568999999
Q ss_pred ecccCCCCCCcH---HHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 211 TKIDLMDKGTDA---ADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 211 tK~D~~~~~~~~---~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
||+|+.+..... .+... ......|+.+++....++++....+
T Consensus 124 nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l 168 (177)
T 1wms_A 124 NKIDISERQVSTEEAQAWCR---DNGDYPYFETSAKDATNVAAAFEEA 168 (177)
T ss_dssp ECTTCSSCSSCHHHHHHHHH---HTTCCCEEECCTTTCTTHHHHHHHH
T ss_pred ECCcccccccCHHHHHHHHH---hcCCceEEEEeCCCCCCHHHHHHHH
Confidence 999997433221 22211 1233467777666666655544433
No 83
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.35 E-value=2.4e-12 Score=121.40 Aligned_cols=123 Identities=21% Similarity=0.352 Sum_probs=73.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+++|+|+|.+|+|||||+|+|+|..+ +.+.. .+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~----------------------------------------- 38 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKI----------------------------------------- 38 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSC-----------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCcccee-----------------------------------------
Confidence 47899999999999999999999874 32211 111111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcC-C---CeEEEEeecCCCccc
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK-P---NCIILAISPANQDLA 188 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~-~---d~iil~v~~a~~d~~ 188 (610)
..+.+ ..+.++||||+..... .+....+....+...|++. + +.++.++++.+.+-.
T Consensus 39 -------------~~~~~-----~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~ 98 (190)
T 2cxx_A 39 -------------IEIEW-----KNHKIIDMPGFGFMMG--LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEI 98 (190)
T ss_dssp -------------EEEEE-----TTEEEEECCCBSCCTT--SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHH
T ss_pred -------------EEEec-----CCEEEEECCCcccccc--CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhH
Confidence 11111 1789999999754322 1222345566777777665 4 455555554321100
Q ss_pred ---------cHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 189 ---------TSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 189 ---------~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
......+...+...+.|+++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 99 IKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC
T ss_pred HHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc
Confidence 001122333344457899999999999765
No 84
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.35 E-value=3.1e-13 Score=136.12 Aligned_cols=154 Identities=23% Similarity=0.338 Sum_probs=93.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|+++|.+|+|||||+|+|+|..+ +.+.- |
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~-----~----------------------------------------- 34 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNW-----P----------------------------------------- 34 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEEC-----T-----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCC-----C-----------------------------------------
Confidence 357899999999999999999999864 33321 1
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHh--cCCCeEEEEeecCCCccccH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATS 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~d~iil~v~~a~~d~~~~ 190 (610)
|.+... ....+.. +...+.||||||+.+.... ... ..++..|+ .++|++|+|+++.+. .
T Consensus 35 ---~~t~~~--~~~~~~~---~~~~~~l~DtpG~~~~~~~----~~~---~~~~~~~~~~~~~d~vi~v~D~~~~----~ 95 (271)
T 3k53_A 35 ---GVTVEK--KEGIMEY---REKEFLVVDLPGIYSLTAH----SID---ELIARNFILDGNADVIVDIVDSTCL----M 95 (271)
T ss_dssp ---TSSCEE--EEEEEEE---TTEEEEEEECCCCSCCCSS----CHH---HHHHHHHHHTTCCSEEEEEEEGGGH----H
T ss_pred ---CeEEEe--eEEEEEE---CCceEEEEeCCCccccccC----CHH---HHHHHHhhhccCCcEEEEEecCCcc----h
Confidence 111100 0011111 2235899999999865332 111 23466776 789999999987652 2
Q ss_pred HHHHHHHHhCCCC-CceEEEeecccCCCCC---CcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHH
Q 007263 191 DAIKISREVDPTG-ERTFGVLTKIDLMDKG---TDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 191 ~~l~l~~~~~~~~-~rti~VltK~D~~~~~---~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
..+.+...+...+ .|+++|+||+|+.+.. .+...+ ...++.+++.++.....++++....+.
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l----~~~lg~~~~~~Sa~~g~gi~~l~~~i~ 161 (271)
T 3k53_A 96 RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKM----RKELGVPVIPTNAKKGEGVEELKRMIA 161 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHH----HHHHSSCEEECBGGGTBTHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHH----HHHcCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3344444444445 9999999999976321 122222 223456677777766666655555443
No 85
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.35 E-value=1.3e-12 Score=120.81 Aligned_cols=108 Identities=9% Similarity=0.041 Sum_probs=58.1
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HHH-HHHHHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAI-KISREVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~l-~l~~~~~~~~~rti~VltK 212 (610)
..+.++||||..... ..+...|++.+|++++|++..+.+.... ..+ .+.......+.|+++|+||
T Consensus 51 ~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (169)
T 3q85_A 51 VTLIVYDIWEQGDAG------------GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118 (169)
T ss_dssp EEEEEECCCCC--------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEECCCccccc------------hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeC
Confidence 357899999986531 1234567788999999998765321111 111 2223333347899999999
Q ss_pred ccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
+|+.+......+.........+..|+.+++.+..++++....+
T Consensus 119 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 119 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred cchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9987433211111111122334466666666655555544433
No 86
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.35 E-value=5.1e-13 Score=127.93 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=92.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+|+|++..+ +.....++.... ..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~-~~------------------------------------- 63 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEF-SEGYDPTVENTY-SK------------------------------------- 63 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSCCCCCSEEEE-EE-------------------------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCC-CCCCCCccceEE-EE-------------------------------------
Confidence 456899999999999999999999875 222111111110 00
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
.+ ........+.|+||||..... .+...|++.+|++|+|++..+.+.. ...
T Consensus 64 --------------~~-~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~-~~~ 114 (201)
T 3oes_A 64 --------------IV-TLGKDEFHLHLVDTAGQDEYS-------------ILPYSFIIGVHGYVLVYSVTSLHSF-QVI 114 (201)
T ss_dssp --------------EE-C----CEEEEEEEECCCCTTC-------------CCCGGGTTTCCEEEEEEETTCHHHH-HHH
T ss_pred --------------EE-EECCEEEEEEEEECCCccchH-------------HHHHHHHhcCCEEEEEEeCCCHHHH-HHH
Confidence 00 001122357899999976542 2356789999999999987653211 122
Q ss_pred HHHHHHh----CCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 193 IKISREV----DPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 193 l~l~~~~----~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
..+...+ ...+.|+++|+||+|+.+................+..|+.+++.+..++++.+..+...
T Consensus 115 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (201)
T 3oes_A 115 ESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQE 184 (201)
T ss_dssp HHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 2233322 23468999999999987543211111111122334567777777777777666555443
No 87
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.35 E-value=2.7e-13 Score=126.59 Aligned_cols=158 Identities=18% Similarity=0.140 Sum_probs=86.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+++|++..+ +......+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~-------------------------------------------- 39 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTI-------------------------------------------- 39 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTT--------------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCce--------------------------------------------
Confidence 346899999999999999999998764 21110000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-c-H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~-~ 190 (610)
| ..+. ...+.+.+.....+.++||||.... ..+...|++.+|++|+|++..+.+.. . .
T Consensus 40 ---~--~~~~--~~~~~~~~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (178)
T 2hxs_A 40 ---G--LDFF--LRRITLPGNLNVTLQIWDIGGQTIG-------------GKMLDKYIYGAQGVLLVYDITNYQSFENLE 99 (178)
T ss_dssp ---T--SSEE--EEEEEETTTEEEEEEEEECTTCCTT-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred ---e--EEEE--EEEEEeCCCCEEEEEEEECCCCccc-------------cchhhHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 0 0000 0111111111246899999996543 23467889999999999987653211 1 1
Q ss_pred HHHHHHHHhCC--CCCc-eEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 191 DAIKISREVDP--TGER-TFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 191 ~~l~l~~~~~~--~~~r-ti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
..+..+....+ .+.+ +++|+||+|+.+......+.........+..++.+++.+..+++.....+
T Consensus 100 ~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (178)
T 2hxs_A 100 DWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKV 167 (178)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Confidence 11122222111 1345 78999999997532211111111111223456666666655555544433
No 88
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.34 E-value=1.7e-12 Score=125.64 Aligned_cols=106 Identities=12% Similarity=0.193 Sum_probs=63.5
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCC----CCCceEEEeec
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP----TGERTFGVLTK 212 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~----~~~rti~VltK 212 (610)
.+.|+||||..+ ...++..|++.+|++|+|++..+.+. ......+...+.. .+.++++|+||
T Consensus 85 ~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~D~~~~~s-~~~~~~~l~~i~~~~~~~~~piilV~NK 150 (217)
T 2f7s_A 85 HLQLWDTAGQER-------------FRSLTTAFFRDAMGFLLMFDLTSQQS-FLNVRNWMSQLQANAYCENPDIVLIGNK 150 (217)
T ss_dssp EEEEEEEESHHH-------------HHHHHHHHHTTCCEEEEEEETTCHHH-HHHHHHHHHTCCCCCTTTCCEEEEEEEC
T ss_pred EEEEEECCCcHh-------------HHhHHHHHhcCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcCcCCCCEEEEEEC
Confidence 589999999432 35678899999999999998765321 1222334444442 46899999999
Q ss_pred ccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHH
Q 007263 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
+|+.+......+.+.......+..|+.+++.+..+++.+...+.
T Consensus 151 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 194 (217)
T 2f7s_A 151 ADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194 (217)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHH
T ss_pred CccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHH
Confidence 99975322111111111112334566666666555555444433
No 89
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.34 E-value=3.7e-12 Score=120.53 Aligned_cols=114 Identities=21% Similarity=0.224 Sum_probs=73.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
-.+|+|+|.+|+|||||+|+|++..+ +.... +|.-.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~-~t~~~------------------------------------------ 57 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQF-NEDMI-PTVGF------------------------------------------ 57 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCC-CCCSE------------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCC-CCccC-CCCce------------------------------------------
Confidence 45899999999999999999998765 21111 11000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
... . +. .....+.|+||||..+. ..+...|++.+|++|+|++..+.+.. ....
T Consensus 58 --------~~~--~--~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~s~-~~~~ 110 (188)
T 1zd9_A 58 --------NMR--K--IT-KGNVTIKLWDIGGQPRF-------------RSMWERYCRGVSAIVYMVDAADQEKI-EASK 110 (188)
T ss_dssp --------EEE--E--EE-ETTEEEEEEEECCSHHH-------------HTTHHHHHTTCSEEEEEEETTCGGGH-HHHH
T ss_pred --------eEE--E--EE-eCCEEEEEEECCCCHhH-------------HHHHHHHHccCCEEEEEEECCCHHHH-HHHH
Confidence 000 0 11 12346889999996442 45577889999999999987653321 1222
Q ss_pred HHHHH-hC---CCCCceEEEeecccCCCC
Q 007263 194 KISRE-VD---PTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 194 ~l~~~-~~---~~~~rti~VltK~D~~~~ 218 (610)
.+... .. ..+.++++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 111 NELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 22222 22 257899999999999764
No 90
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.34 E-value=1.7e-12 Score=119.88 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=46.2
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HHHHHHHHhCCCCCceEEEeeccc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~l~l~~~~~~~~~rti~VltK~D 214 (610)
.+.++||||..+. ..+...|++.+|++|+|++..+...... ..+..+......+.++++|.||+|
T Consensus 56 ~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D 122 (170)
T 1r2q_A 56 KFEIWDTAGQERY-------------HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122 (170)
T ss_dssp EEEEEEECCSGGG-------------GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEeCCCcHHh-------------hhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 5889999996543 3456788999999999998765321111 111222233344688999999999
Q ss_pred CCCC
Q 007263 215 LMDK 218 (610)
Q Consensus 215 ~~~~ 218 (610)
+.+.
T Consensus 123 l~~~ 126 (170)
T 1r2q_A 123 LANK 126 (170)
T ss_dssp GGGG
T ss_pred Cccc
Confidence 8753
No 91
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=124.68 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+|+|++..+.+......
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------------------------------------- 61 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL--------------------------------------------- 61 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCc---------------------------------------------
Confidence 45689999999999999999999876511100000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-c-H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~-~ 190 (610)
| .......+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.... . .
T Consensus 62 ---~----~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~d~~~~~s~~~~~ 120 (199)
T 2p5s_A 62 ---G----VDFQMKTLIV-DGERTVLQLWDTAGQERF-------------RSIAKSYFRKADGVLLLYDVTCEKSFLNIR 120 (199)
T ss_dssp ----------CEEEEEEE-TTEEEEEEEEECTTCTTC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred ---c----ceeEEEEEEE-CCEEEEEEEEECCCCcch-------------hhhHHHHHhhCCEEEEEEECCChHHHHHHH
Confidence 0 0000001111 111235899999996542 56678899999999999987653211 1 1
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLM 216 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~ 216 (610)
..+..++.....+.|+++|+||+|+.
T Consensus 121 ~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 121 EWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHHHC---CCEEEEEECGGGH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccc
Confidence 22333444455578999999999986
No 92
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.34 E-value=2.2e-12 Score=121.63 Aligned_cols=154 Identities=17% Similarity=0.215 Sum_probs=90.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.-.+|+|+|.+|+|||||+|++++... .... +|.-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~-~t~~------------------------------------------ 51 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV--DTIS-PTLG------------------------------------------ 51 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC--SSCC-CCSS------------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC--Cccc-ccCc------------------------------------------
Confidence 457899999999999999999998751 1111 1110
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+... .+.+ +...+.++||||..+. ..+...|++.+|++|+|++..+.+.. ...
T Consensus 52 --------~~~~--~~~~---~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~-~~~ 104 (186)
T 1ksh_A 52 --------FNIK--TLEH---RGFKLNIWDVGGQKSL-------------RSYWRNYFESTDGLIWVVDSADRQRM-QDC 104 (186)
T ss_dssp --------EEEE--EEEE---TTEEEEEEEECCSHHH-------------HTTGGGGCTTCSEEEEEEETTCGGGH-HHH
T ss_pred --------cceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEECcCHHHH-HHH
Confidence 1111 1111 2346899999997542 44567889999999999987654321 222
Q ss_pred HHHHHH-hC---CCCCceEEEeecccCCCCCCcHHHHHcCcc----cccCCCeeEeeeCChhhhhccccHHHHHH
Q 007263 193 IKISRE-VD---PTGERTFGVLTKIDLMDKGTDAADILEGKS----YRLKFPWIGVVNRSQADINKNVDMIAARR 259 (610)
Q Consensus 193 l~l~~~-~~---~~~~rti~VltK~D~~~~~~~~~~~l~~~~----~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (610)
..+... .. ..+.|+++|+||+|+.+... ..++.+... ...+.+++.+++.+..++++....+....
T Consensus 105 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 105 QRELQSLLVEERLAGATLLIFANKQDLPGALS-CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhcCCCcEEEEEeCccCCCCCC-HHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 222222 22 24789999999999976532 222211111 12223455666666566665555544433
No 93
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.33 E-value=1.2e-12 Score=122.35 Aligned_cols=155 Identities=12% Similarity=0.198 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+|+|++..+.+......+.-.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 45 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADF----------------------------------------- 45 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSC-----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEE-----------------------------------------
Confidence 457899999999999999999998765211111100000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~-- 190 (610)
....+.+.+.....+.|+||||.... ..+...|++.+|++|+|++..+......
T Consensus 46 -----------~~~~~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 101 (182)
T 1ky3_A 46 -----------LTKEVTVDGDKVATMQVWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVTNASSFENIK 101 (182)
T ss_dssp -----------EEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEETTCHHHHHTHH
T ss_pred -----------EEEEEEEcCCcEEEEEEEECCCChHh-------------hhhhHHHhhcCCEEEEEEECCChHHHHHHH
Confidence 00011111112346899999995432 4556788999999999998765321111
Q ss_pred HHHH-HHHHh---CCCCCceEEEeecccCCCCCCc-----HHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 191 DAIK-ISREV---DPTGERTFGVLTKIDLMDKGTD-----AADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 191 ~~l~-l~~~~---~~~~~rti~VltK~D~~~~~~~-----~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
..+. +.... ...+.|+++|+||+|+.+.... ...+.. ......|+.+++.+..+++.....+
T Consensus 102 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (182)
T 1ky3_A 102 SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK---SLGDIPLFLTSAKNAINVDTAFEEI 172 (182)
T ss_dssp HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH---HTTSCCEEEEBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH---hcCCCeEEEEecCCCCCHHHHHHHH
Confidence 1111 11221 2357899999999998643211 112211 1223456777766666555544443
No 94
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.33 E-value=8.9e-13 Score=126.28 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=87.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|..|+|||||+|+|++..+.+....+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~------------------------------------------- 60 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV------------------------------------------- 60 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------C-------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccc-------------------------------------------
Confidence 4568999999999999999999987652211100000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~ 190 (610)
.+... .+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+..... .
T Consensus 61 -------~~~~~--~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 117 (200)
T 2o52_A 61 -------EFGSR--VVNV-GGKTVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSRETYNSLA 117 (200)
T ss_dssp -------CEEEE--EEEE-TTEEEEEEEECCTTHHHH-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred -------eeEEE--EEEE-CCeeeEEEEEcCCCcHhH-------------HHHHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 00000 1111 111236899999996432 234667899999999999876532111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCCC-cHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
..+..+......+.++++|+||+|+.+... ...+. .......+..|+.+++.+..++++....+...
T Consensus 118 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 185 (200)
T 2o52_A 118 AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEA-SRFAQENELMFLETSALTGENVEEAFLKCART 185 (200)
T ss_dssp HHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 122223333445789999999999864322 11111 10111233456667766666666555544433
No 95
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.33 E-value=1.1e-12 Score=125.79 Aligned_cols=157 Identities=13% Similarity=0.217 Sum_probs=86.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+|+|+|..+.+......+.-. .
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~------------------------------------- 46 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF---L------------------------------------- 46 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEE---E-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE---E-------------------------------------
Confidence 456899999999999999999999875322111111000 0
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-cH-
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TS- 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~~- 190 (610)
...+.+ ......+.|+||||..... .+...|++.+|++|+|++..+.+.. ..
T Consensus 47 ------------~~~~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (207)
T 1vg8_A 47 ------------TKEVMV-DDRLVTMQIWDTAGQERFQ-------------SLGVAFYRGADCCVLVFDVTAPNTFKTLD 100 (207)
T ss_dssp ------------EEEEES-SSCEEEEEEEEECSSGGGS-------------CSCCGGGTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCcHHHH-------------HhHHHHHhCCcEEEEEEECCCHHHHHHHH
Confidence 000100 0112358999999965432 2345788999999999987653211 11
Q ss_pred HHHH-HHHHhC---CCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 191 DAIK-ISREVD---PTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 191 ~~l~-l~~~~~---~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
..+. +..... +.+.|+++|+||+|+.+..........-........|+.+++.+..+++.+...+
T Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 169 (207)
T 1vg8_A 101 SWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169 (207)
T ss_dssp HHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHH
Confidence 1111 222221 2468999999999997433221111100001233456666666555554444433
No 96
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.33 E-value=8.6e-13 Score=122.24 Aligned_cols=148 Identities=21% Similarity=0.327 Sum_probs=84.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
++|+++|++|+|||||+|+|+|..+ +.+ ..|
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~-----~~~------------------------------------------- 34 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIG-----NWP------------------------------------------- 34 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC---------------------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-ecc-----CCC-------------------------------------------
Confidence 5799999999999999999999764 221 112
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc--CCCeEEEEeecCCCccccHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~d~iil~v~~a~~d~~~~~~ 192 (610)
|.+.. .....+.+ +...+.++||||..+.... . .-+.+...|+. .+|++++++++.+.+ ..
T Consensus 35 -~~t~~--~~~~~~~~---~~~~l~i~Dt~G~~~~~~~----~---~~~~~~~~~~~~~~~~~~i~v~D~~~~~----~~ 97 (165)
T 2wji_A 35 -GVTVE--KKEGEFEY---NGEKFKVVDLPGVYSLTAN----S---IDEIIARDYIINEKPDLVVNIVDATALE----RN 97 (165)
T ss_dssp ---CCC--CCEEEEEE---TTEEEEEEECCCCSCSSSS----S---HHHHHHHHHHHHHCCSEEEEEEETTCHH----HH
T ss_pred -Cccee--eeEEEEEE---CCcEEEEEECCCcccCCCc----c---hhHHHHHHHHhcCCCCEEEEEecCCchh----Hh
Confidence 00000 00011111 1236899999998764321 1 12355667765 899999999876521 22
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCCC---cHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
..+...+...+.++++|.||+|+..... +...+. ..++..|+.+++.+..+++++.
T Consensus 98 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~~v~~l~ 156 (165)
T 2wji_A 98 LYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE----KILGVKVVPLSAAKKMGIEELK 156 (165)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHH----HHHTSCEEECBGGGTBSHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHH----HHhCCCEEEEEcCCCCCHHHHH
Confidence 2333333335789999999999863211 122221 1223456666665555544433
No 97
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.33 E-value=6.3e-13 Score=124.89 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=40.0
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.|+||||.... ..+...|++.+|++|+|++..+..... ...+..+......+.|+++|+||+
T Consensus 57 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 123 (183)
T 2fu5_C 57 IKLQIWDTAGQERF-------------RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123 (183)
T ss_dssp EEEEEEEC----------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC-
T ss_pred EEEEEEcCCCChhh-------------hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 36889999997542 344667899999999999876532111 112222333334578999999999
Q ss_pred cCCCC
Q 007263 214 DLMDK 218 (610)
Q Consensus 214 D~~~~ 218 (610)
|+.+.
T Consensus 124 Dl~~~ 128 (183)
T 2fu5_C 124 DVNDK 128 (183)
T ss_dssp -CCSC
T ss_pred cCCcc
Confidence 99754
No 98
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=2.1e-12 Score=122.39 Aligned_cols=159 Identities=17% Similarity=0.204 Sum_probs=91.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|.+|+|||||+|+|++..+-+......+ .. .
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~-~~--~--------------------------------------- 52 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG-VD--F--------------------------------------- 52 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS-EE--E---------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc-eE--E---------------------------------------
Confidence 45899999999999999999998875222111100 00 0
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
....+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.+.. ....
T Consensus 53 ----------~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~ 107 (195)
T 1x3s_A 53 ----------KVKTISV-DGNKAKLAIWDTAGQERF-------------RTLTPSYYRGAQGVILVYDVTRRDTF-VKLD 107 (195)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEEECSSGGG-------------CCSHHHHHTTCCEEEEEEETTCHHHH-HTHH
T ss_pred ----------EEEEEEE-CCeEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEECcCHHHH-HHHH
Confidence 0000111 111236889999997553 23467889999999999987653211 1122
Q ss_pred HHHHHhC----CCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHHH
Q 007263 194 KISREVD----PTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 260 (610)
Q Consensus 194 ~l~~~~~----~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (610)
.+...+. ..+.++++|+||+|+.+......+.. ......+..|+.+++....+++.+...+.....
T Consensus 108 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 108 NWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGL-KFARKHSMLFIEASAKTCDGVQCAFEELVEKII 177 (195)
T ss_dssp HHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHH-HHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHH-HHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 2333333 24689999999999954322211111 111123345667777766666666655544433
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.32 E-value=3.4e-12 Score=119.72 Aligned_cols=152 Identities=17% Similarity=0.184 Sum_probs=85.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.-.+|+|+|.+|+|||||+|+|++..+ +.. .|
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~------~~----------------------------------------- 48 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV-VTT------KP----------------------------------------- 48 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE-EEE------CS-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc-Ccc------CC-----------------------------------------
Confidence 457999999999999999999997654 100 00
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+.++.... +.+ +...+.++||||..+. ..+...|++.+|++|+|++..+... -...
T Consensus 49 -----t~~~~~~~--~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~ 104 (183)
T 1moz_A 49 -----TIGFNVET--LSY---KNLKLNVWDLGGQTSI-------------RPYWRCYYADTAAVIFVVDSTDKDR-MSTA 104 (183)
T ss_dssp -----STTCCEEE--EEE---TTEEEEEEEEC----C-------------CTTGGGTTTTEEEEEEEEETTCTTT-HHHH
T ss_pred -----cCccceEE--EEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCHHH-HHHH
Confidence 01111111 111 1246899999998653 2235678899999999998765321 1222
Q ss_pred HHHHHHhC----CCCCceEEEeecccCCCCCC--cHHHHHcCc-ccccCCCeeEeeeCChhhhhccccHHH
Q 007263 193 IKISREVD----PTGERTFGVLTKIDLMDKGT--DAADILEGK-SYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 193 l~l~~~~~----~~~~rti~VltK~D~~~~~~--~~~~~l~~~-~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
..+...+. ..+.|+++|+||+|+.+... +..+.+... .......++.+++.+..+++++...+.
T Consensus 105 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (183)
T 1moz_A 105 SKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 175 (183)
T ss_dssp HHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred HHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 22333222 35789999999999976432 122222111 011122455566655555555444443
No 100
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.32 E-value=8.4e-13 Score=126.52 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=44.9
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhCC---CCCceEEEe
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDP---TGERTFGVL 210 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~~---~~~rti~Vl 210 (610)
..+.|+||||.... ..+...|++.+|++|+|++..+..... ...+..+....+ .+.|+++|+
T Consensus 73 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 139 (208)
T 2yc2_C 73 VELFLLDTAGSDLY-------------KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVA 139 (208)
T ss_dssp EEEEEEETTTTHHH-------------HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEE
T ss_pred EEEEEEECCCcHHH-------------HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEE
Confidence 36899999997542 566788999999999999876532111 112222333333 578999999
Q ss_pred ecccCCC
Q 007263 211 TKIDLMD 217 (610)
Q Consensus 211 tK~D~~~ 217 (610)
||+|+.+
T Consensus 140 nK~Dl~~ 146 (208)
T 2yc2_C 140 NKTDLPP 146 (208)
T ss_dssp ECC----
T ss_pred ECcccch
Confidence 9999976
No 101
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.32 E-value=4.5e-12 Score=119.81 Aligned_cols=152 Identities=14% Similarity=0.176 Sum_probs=78.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
.+|+|+|..|+|||||+|+|++..+.+.. ..++......
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~---------------------------------------- 60 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEY-DPTIEDSYRK---------------------------------------- 60 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSCC-CTTCCEEEEE----------------------------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCcccc-CCccceEEEE----------------------------------------
Confidence 58999999999999999999987652211 1111111000
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~ 192 (610)
.+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+..... ...
T Consensus 61 ------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 114 (190)
T 3con_A 61 ------------QVVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNSKSFADINLY 114 (190)
T ss_dssp ------------EEEE-TTEEEEEEEEECCC------------------------CTTCSEEEEEEETTCHHHHHHHHHH
T ss_pred ------------EEEE-CCEEEEEEEEECCChHHH-------------HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHH
Confidence 0001 111235889999996542 445678999999999999876532111 111
Q ss_pred HHHHHH-hCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccH
Q 007263 193 IKISRE-VDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (610)
Q Consensus 193 l~l~~~-~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (610)
+..+.. ....+.++++|+||+|+.+......+. .......+..++.++..+..++++....
T Consensus 115 ~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 115 REQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQA-HELAKSYGIPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp HHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHH-HHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHH-HHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 122222 233578999999999987632221111 1111122335555555554444444333
No 102
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.31 E-value=3.2e-12 Score=120.10 Aligned_cols=114 Identities=14% Similarity=0.191 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|..|+|||||+|+|++..+ .. . .|
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~----~--~~----------------------------------------- 51 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-VH----T--SP----------------------------------------- 51 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-EE----E--EC-----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-Cc----c--CC-----------------------------------------
Confidence 456899999999999999999999865 10 0 00
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+.++... .+.+ +...+.|+||||..+. ..+...|++.+|++|+|++..+.... ...
T Consensus 52 -----t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~s~-~~~ 107 (181)
T 2h17_A 52 -----TIGSNVE--EIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTDRERI-SVT 107 (181)
T ss_dssp -----CSSSSCE--EEEE---TTEEEEEEEESSSGGG-------------TCGGGGGGTTCCEEEEEEETTCTTTH-HHH
T ss_pred -----cCceeeE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCHHHH-HHH
Confidence 0111111 1111 2256899999998553 23456889999999999987654221 222
Q ss_pred HHHHH-HhC---CCCCceEEEeecccCCCC
Q 007263 193 IKISR-EVD---PTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~-~~~---~~~~rti~VltK~D~~~~ 218 (610)
..+.. ... ..+.++++|+||+|+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 108 REELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 22222 222 357899999999999764
No 103
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=3.5e-12 Score=121.44 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+++|++..+.+... .++... ..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~~--~~------------------------------------- 66 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD-PTLEST--YR------------------------------------- 66 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC-TTCCEE--EE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccC-CCCCce--EE-------------------------------------
Confidence 34689999999999999999999876522111 110000 00
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-c-H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~-~ 190 (610)
..+.+ ......+.|+||||... ..+...|++.+|++|+|++..+.+.. . .
T Consensus 67 -------------~~~~~-~~~~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 118 (196)
T 2atv_A 67 -------------HQATI-DDEVVSMEILDTAGQED--------------TIQREGHMRWGEGFVLVYDITDRGSFEEVL 118 (196)
T ss_dssp -------------EEEEE-TTEEEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred -------------EEEEE-CCEEEEEEEEECCCCCc--------------ccchhhhhccCCEEEEEEECcCHHHHHHHH
Confidence 00001 11123588999999754 24567888999999999987653211 1 1
Q ss_pred HHHHHHH-HhCCCCCceEEEeecccCCCC
Q 007263 191 DAIKISR-EVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 191 ~~l~l~~-~~~~~~~rti~VltK~D~~~~ 218 (610)
..+..+. .....+.|+++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 119 PLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 1122222 233457899999999999753
No 104
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.31 E-value=7.8e-12 Score=117.66 Aligned_cols=115 Identities=20% Similarity=0.310 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|+++|++|+|||||+++|+|..+ + .. .| +
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~----~~--~~-------t--------------------------------- 47 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-S----HI--TP-------T--------------------------------- 47 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-E----EE--EE-------E---------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-C----cc--cC-------c---------------------------------
Confidence 467999999999999999999998754 1 00 01 0
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
.| +... .+.+ +...+.++||||.... +.+...|++.+|++|+|++..+.+.. ...
T Consensus 48 --~g----~~~~--~~~~---~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~ 102 (181)
T 1fzq_A 48 --QG----FNIK--SVQS---QGFKLNVWDIGGQRKI-------------RPYWRSYFENTDILIYVIDSADRKRF-EET 102 (181)
T ss_dssp --TT----EEEE--EEEE---TTEEEEEEECSSCGGG-------------HHHHHHHHTTCSEEEEEEETTCGGGH-HHH
T ss_pred --CC----eEEE--EEEE---CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEEEECcCHHHH-HHH
Confidence 01 1111 1111 1346889999997542 56678899999999999987653211 122
Q ss_pred HHHHHHh----CCCCCceEEEeecccCCCCC
Q 007263 193 IKISREV----DPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 193 l~l~~~~----~~~~~rti~VltK~D~~~~~ 219 (610)
......+ ...+.|+++|+||+|+.+..
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 103 GQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 2222222 23578999999999997653
No 105
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.31 E-value=3.3e-12 Score=135.99 Aligned_cols=162 Identities=19% Similarity=0.203 Sum_probs=97.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..+.|+|+|..|+|||||+|+|+|..+.+. +..|
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-----~~~~----------------------------------------- 66 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIV-----SDYA----------------------------------------- 66 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC--------------------------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCcc-----CCCC-----------------------------------------
Confidence 567899999999999999999999875221 1111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
|.+.. ..... +.......+.||||||+.+....++. . .+.+..++..+|.+|+|+++ ... ...
T Consensus 67 ---gtT~d--~~~~~--~~~~~~~~l~liDTpG~~d~~~l~~~-~-----~~~~~~~l~~aD~vllVvD~-~~~---~~~ 129 (423)
T 3qq5_A 67 ---GTTTD--PVYKS--MELHPIGPVTLVDTPGLDDVGELGRL-R-----VEKARRVFYRADCGILVTDS-APT---PYE 129 (423)
T ss_dssp ------CC--CCEEE--EEETTTEEEEEEECSSTTCCCTTCCC-C-----HHHHHHHHTSCSEEEEECSS-SCC---HHH
T ss_pred ---Ceeee--eEEEE--EEECCCCeEEEEECcCCCcccchhHH-H-----HHHHHHHHhcCCEEEEEEeC-CCh---HHH
Confidence 11110 11111 11122236899999999875432211 1 23367789999999999976 222 222
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHH
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 259 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (610)
..+...+...+.++++|+||+|+.+.... +.........+..++.+++.+..+++++...+....
T Consensus 130 ~~~l~~l~~~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 130 DDVVNLFKEMEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp HHHHHHHHHTTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred HHHHHHHHhcCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 33444444447899999999999866543 222222334456788888888777777776665544
No 106
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.30 E-value=2.3e-12 Score=121.84 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=73.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.-.+|+|+|.+|+|||||+|+|++..+ +. ..|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~------~~~----------------------------------------- 52 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDV-VT------TVP----------------------------------------- 52 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCC-EE------ECS-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCC-CC------cCC-----------------------------------------
Confidence 457899999999999999999988764 11 011
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+.++... .+.+ +...+.++||||..+... +...|++.+|++|+|++..+.+.. ...
T Consensus 53 -----t~~~~~~--~~~~---~~~~~~~~Dt~G~~~~~~-------------~~~~~~~~~d~ii~v~d~~~~~s~-~~~ 108 (189)
T 2x77_A 53 -----TVGVNLE--TLQY---KNISFEVWDLGGQTGVRP-------------YWRCYFSDTDAVIYVVDSTDRDRM-GVA 108 (189)
T ss_dssp -----STTCCEE--EEEE---TTEEEEEEEECCSSSSCC-------------CCSSSSTTCCEEEEEEETTCCTTH-HHH
T ss_pred -----CCceEEE--EEEE---CCEEEEEEECCCCHhHHH-------------HHHHHhhcCCEEEEEEeCCCHHHH-HHH
Confidence 0001111 1111 134689999999865422 244678899999999987654311 122
Q ss_pred HH-HHHHh---CCCCCceEEEeecccCCCCC
Q 007263 193 IK-ISREV---DPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 193 l~-l~~~~---~~~~~rti~VltK~D~~~~~ 219 (610)
.. +.... ...+.|+++|+||+|+.+..
T Consensus 109 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 139 (189)
T 2x77_A 109 KHELYALLDEDELRKSLLLIFANKQDLPDAA 139 (189)
T ss_dssp HHHHHHHHTCSTTTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhhhhcCCCeEEEEEECCCCcCCC
Confidence 22 22222 23478999999999997653
No 107
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.29 E-value=4.8e-13 Score=138.77 Aligned_cols=163 Identities=18% Similarity=0.207 Sum_probs=92.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
+|.|++||.+|||||||+|+|++......+...+|..|..-
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--------------------------------------- 198 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--------------------------------------- 198 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE---------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE---------------------------------------
Confidence 67899999999999999999998653111111223333110
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCC---CccccH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN---QDLATS 190 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~---~d~~~~ 190 (610)
. +..++...++|+||||+...+... ..+ .....++++.+|++|+|++.++ .+....
T Consensus 199 -------------~--v~~~~~~~~~l~DtPG~i~~a~~~--~~l----~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~ 257 (342)
T 1lnz_A 199 -------------M--VETDDGRSFVMADLPGLIEGAHQG--VGL----GHQFLRHIERTRVIVHVIDMSGLEGRDPYDD 257 (342)
T ss_dssp -------------E--EECSSSCEEEEEEHHHHHHHTTCT--TTT----HHHHHHHHHHCCEEEEEEESSCSSCCCHHHH
T ss_pred -------------E--EEeCCCceEEEecCCCCccccccc--chh----HHHHHHHHHhccEEEEEEECCcccccChHHH
Confidence 1 112222468999999986533221 111 1223444667999999998875 222111
Q ss_pred --HHHHHHHHhCC--CCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHH
Q 007263 191 --DAIKISREVDP--TGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (610)
Q Consensus 191 --~~l~l~~~~~~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (610)
.....+..+.+ ...|.++|+||+|+.+......++.+. ......++.+++.+..+++++...+...
T Consensus 258 ~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~--l~~~~~v~~iSA~tg~gi~eL~~~l~~~ 327 (342)
T 1lnz_A 258 YLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEK--LTDDYPVFPISAVTREGLRELLFEVANQ 327 (342)
T ss_dssp HHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHH--CCSCCCBCCCSSCCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHH--hhcCCCEEEEECCCCcCHHHHHHHHHHH
Confidence 12223344443 478999999999997543222222211 1111456667776666666655554433
No 108
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.28 E-value=1.3e-11 Score=117.57 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=76.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|+.|+|||||++.+.|. +.+.. |.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~----~~------------------------------------------- 50 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK-MSPNE----TL------------------------------------------- 50 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC-CCGGG----GG-------------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc-CCCcc----ee-------------------------------------------
Confidence 5679999999999999999999985 32221 00
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHH---HHHhcCCCeEEEEeecCCCcccc
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV---RSYIEKPNCIILAISPANQDLAT 189 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~---~~yi~~~d~iil~v~~a~~d~~~ 189 (610)
+..+....+...+.+.....+.|+||||..+.. .+. ..|++.+|++|+|++..+.-...
T Consensus 51 -----~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 112 (196)
T 3llu_A 51 -----FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFF-------------DPTFDYEMIFRGTGALIYVIDAQDDYMEA 112 (196)
T ss_dssp -----GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTT-------------CTTCCHHHHHHTCSEEEEEEETTSCCHHH
T ss_pred -----eeccccceeeeeccCCCeeEEEEEECCCCHHHH-------------hhhhhcccccccCCEEEEEEECCCchHHH
Confidence 011122223333333445689999999975532 123 68889999999999876531111
Q ss_pred -HHHHHHHHHh--CCCCCceEEEeecccCCCC
Q 007263 190 -SDAIKISREV--DPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 190 -~~~l~l~~~~--~~~~~rti~VltK~D~~~~ 218 (610)
.....++..+ ...+.++++|.||+|+..+
T Consensus 113 ~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 113 LTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 1222333333 2347899999999998753
No 109
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.28 E-value=3.6e-12 Score=121.79 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
....+|+|+|..|+|||||+++|++..+ +.....++......
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~------------------------------------- 59 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSA------------------------------------- 59 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEE-------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEE-------------------------------------
Confidence 3566899999999999999999998764 32222111111000
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH-
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS- 190 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~- 190 (610)
.+.+ ......+.|+||||..+.. .+...|+.++|++|+|++..+.+....
T Consensus 60 ---------------~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 110 (201)
T 2q3h_A 60 ---------------VVSV-DGRPVRLQLCDTAGQDEFD-------------KLRPLCYTNTDIFLLCFSVVSPSSFQNV 110 (201)
T ss_dssp ---------------EEEE-TTEEEEEEEEECCCSTTCS-------------SSGGGGGTTCSEEEEEEETTCHHHHHHH
T ss_pred ---------------EEEE-CCEEEEEEEEECCCCHHHH-------------HHhHhhcCCCcEEEEEEECCCHHHHHHH
Confidence 0001 0111257799999986542 234568999999999998765322111
Q ss_pred --HHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 191 --DAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 191 --~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+..+....+ +.|+++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 111 SEKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp HHTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 11222333333 7899999999999753
No 110
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.28 E-value=4e-12 Score=120.54 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=61.4
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-cHH----HHHHHHHh--CCCCCceEEE
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TSD----AIKISREV--DPTGERTFGV 209 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~~~----~l~l~~~~--~~~~~rti~V 209 (610)
.+.|+||||..+. ..+...|++.+|++|+|++....... +.+ ...+...+ ...+.|+++|
T Consensus 75 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv 141 (198)
T 3t1o_A 75 RFHLYTVPGQVFY-------------NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQ 141 (198)
T ss_dssp EEEEEECCSCCSC-------------SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEE
T ss_pred EEEEEeCCChHHH-------------HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEE
Confidence 5889999997653 45677899999999999987632111 111 22234444 2357899999
Q ss_pred eecccCCCCCC--cHHHHHcCcccccCC-CeeEeeeCChhhhhccccH
Q 007263 210 LTKIDLMDKGT--DAADILEGKSYRLKF-PWIGVVNRSQADINKNVDM 254 (610)
Q Consensus 210 ltK~D~~~~~~--~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~ 254 (610)
+||+|+.+... +..+.+. ..+. .|+.+++....++++.+..
T Consensus 142 ~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~ 185 (198)
T 3t1o_A 142 VNKRDLPDALPVEMVRAVVD----PEGKFPVLEAVATEGKGVFETLKE 185 (198)
T ss_dssp EECTTSTTCCCHHHHHHHHC----TTCCSCEEECBGGGTBTHHHHHHH
T ss_pred EEchhcccccCHHHHHHHHH----hcCCceEEEEecCCCcCHHHHHHH
Confidence 99999975432 1222322 2233 5666665555555444443
No 111
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.28 E-value=8.6e-12 Score=120.43 Aligned_cols=119 Identities=16% Similarity=0.204 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|+|+|++|+|||||+++|++..+-+... +|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~--~~~~~----------------------------------------- 42 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT--SITDS----------------------------------------- 42 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC--CCSCE-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC--Cccee-----------------------------------------
Confidence 46899999999999999999999876522111 11100
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHH-HHHHHhcCCCeEEEEeecCCCccccHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIEN-MVRSYIEKPNCIILAISPANQDLATSD 191 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~-~~~~yi~~~d~iil~v~~a~~d~~~~~ 191 (610)
...+.+.+.....+.|+||||..+. .. +...|++.+|++|+|++..+.......
T Consensus 43 ------------~~~~~~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 97 (214)
T 2fh5_B 43 ------------SAIYKVNNNRGNSLTLIDLPGHESL-------------RFQLLDRFKSSARAVVFVVDSAAFQREVKD 97 (214)
T ss_dssp ------------EEEEECSSTTCCEEEEEECCCCHHH-------------HHHHHHHHGGGEEEEEEEEETTTHHHHHHH
T ss_pred ------------eEEEEecCCCccEEEEEECCCChhH-------------HHHHHHHHHhhCCEEEEEEECCCcCHHHHH
Confidence 0001111111346899999997542 33 677899999999999987652111112
Q ss_pred HHHHHHH------hCCCCCceEEEeecccCCCCC
Q 007263 192 AIKISRE------VDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 192 ~l~l~~~------~~~~~~rti~VltK~D~~~~~ 219 (610)
....... ....+.|+++|+||+|+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 98 VAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 2222221 234568999999999998654
No 112
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=5.6e-12 Score=119.94 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=61.6
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-cc-HHHHHHHHHhCC--CCCceEEEeec
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIKISREVDP--TGERTFGVLTK 212 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~-~~~l~l~~~~~~--~~~rti~VltK 212 (610)
.+.|+||||.... ..+...|++.+|++|+|++..+.+. .. ...+..+..... .+.|+++|+||
T Consensus 57 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK 123 (199)
T 2gf0_A 57 TLQITDTTGSHQF-------------PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK 123 (199)
T ss_dssp EEEEEECCGGGSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEEC
T ss_pred EEEEEeCCChHHh-------------HHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 5889999996543 4667788999999999998765321 11 112222333322 36799999999
Q ss_pred ccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccH
Q 007263 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (610)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (610)
+|+.+........ .......+..|+.+++....+++++...
T Consensus 124 ~Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 124 CDETQREVDTREA-QAVAQEWKCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp TTCSSCSSCHHHH-HHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred ccCCccccCHHHH-HHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence 9997543221111 1111223345666666665555544443
No 113
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.27 E-value=2.3e-12 Score=123.43 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=45.8
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---HHHHHHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~---~~l~l~~~~~~~~~rti~VltK~ 213 (610)
.+.|+||||..+. ..+...|++.+|++|+|++..+...... .....++...+ +.|+++|+||+
T Consensus 74 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~ 139 (201)
T 2gco_A 74 ELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKK 139 (201)
T ss_dssp EEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECG
T ss_pred EEEEEECCCchhH-------------HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecH
Confidence 5889999996543 2334568999999999998765321111 12223333333 68999999999
Q ss_pred cCCCC
Q 007263 214 DLMDK 218 (610)
Q Consensus 214 D~~~~ 218 (610)
|+.+.
T Consensus 140 Dl~~~ 144 (201)
T 2gco_A 140 DLRQD 144 (201)
T ss_dssp GGTTC
T ss_pred HhhcC
Confidence 99864
No 114
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.27 E-value=3.1e-11 Score=114.35 Aligned_cols=139 Identities=18% Similarity=0.295 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCC
Q 007263 4 LISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGS 83 (610)
Q Consensus 4 l~~~~~~lq~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~ 83 (610)
+-.+.+.+.+.+..+.... ....++|+|+|..|+|||||+|+|+|..+.+ ..++..|+.
T Consensus 26 ~~~l~~~l~~~~~~~~~~~--------~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~~---------- 84 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGGG--------GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLS---------- 84 (193)
T ss_dssp CHHHHHHHHHHC----------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------------
T ss_pred HHHHHHHHHHHHHhhcCCC--------CCCCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCce----------
Confidence 3445555555554443211 1356899999999999999999999986521 111111100
Q ss_pred ccceeeccCCCcccCChHHHHHHHHHHhhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHH
Q 007263 84 REYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIE 163 (610)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~ 163 (610)
+..+ ....+.++||||....... +.
T Consensus 85 ----------------------------------~~~~------------~~~~~~l~Dt~G~~~~~~~---------~~ 109 (193)
T 2ged_A 85 ----------------------------------AADY------------DGSGVTLVDFPGHVKLRYK---------LS 109 (193)
T ss_dssp ------------------------------------CC------------CCTTCSEEEETTCCBSSCC---------HH
T ss_pred ----------------------------------eeee------------cCCeEEEEECCCCchHHHH---------HH
Confidence 0000 2357899999998764321 23
Q ss_pred HHHHHHhcCCCeEEEEeecC-CCccccHHHHHHHHHh-------CCCCCceEEEeecccCCCCC
Q 007263 164 NMVRSYIEKPNCIILAISPA-NQDLATSDAIKISREV-------DPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 164 ~~~~~yi~~~d~iil~v~~a-~~d~~~~~~l~l~~~~-------~~~~~rti~VltK~D~~~~~ 219 (610)
......+..+|++|+|++.. +.+. ......+...+ .+.+.|+++|+||+|+.+..
T Consensus 110 ~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 110 DYLKTRAKFVKGLIFMVDSTVDPKK-LTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHHGGGEEEEEEEEETTCCHHH-HHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHhhcccCCEEEEEEECCCCchh-HHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 33444556699999999876 3211 11111111111 34578999999999998654
No 115
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.27 E-value=5.3e-12 Score=120.06 Aligned_cols=114 Identities=15% Similarity=0.235 Sum_probs=70.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.-.+|+|+|++|+|||||+++|++..+ +.. .+|.-
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~-~~~--~~t~~------------------------------------------ 62 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIG------------------------------------------ 62 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCC-EEE--EEETT------------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCc-ccc--CCcCc------------------------------------------
Confidence 446899999999999999999998764 210 11110
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+... .+.. ....+.++||||..+. ..+...|++.+|++|+|++..+.+.. ...
T Consensus 63 --------~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~s~-~~~ 115 (192)
T 2b6h_A 63 --------FNVE--TVEY---KNICFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRERV-QES 115 (192)
T ss_dssp --------EEEE--EEEE---TTEEEEEEECC------------------CTTHHHHHHTCCEEEEEEETTCGGGH-HHH
T ss_pred --------eeEE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCHHHH-HHH
Confidence 0000 0111 2346899999998543 33467789999999999987654211 222
Q ss_pred HHHHHHh-C---CCCCceEEEeecccCCCC
Q 007263 193 IKISREV-D---PTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~-~---~~~~rti~VltK~D~~~~ 218 (610)
..+...+ . ..+.|+++|+||+|+.+.
T Consensus 116 ~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 116 ADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 2222222 2 247899999999999754
No 116
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.27 E-value=2.2e-12 Score=125.71 Aligned_cols=119 Identities=15% Similarity=0.180 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|..|+|||||+++|++..+.+....+.+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 47 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG-------------------------------------------- 47 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------C--------------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------------------------------------------
Confidence 456899999999999999999998875211110000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~-- 190 (610)
..+.. ..+.+ ......+.|+||||..+. ..+...|++.+|++|+|++..+......
T Consensus 48 ------~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vilV~D~~~~~s~~~~~ 105 (223)
T 3cpj_B 48 ------VEFAT--RTLEI-EGKRIKAQIWDTAGQERY-------------RAITSAYYRGAVGALIVYDISKSSSYENCN 105 (223)
T ss_dssp ------CSEEE--EEEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGTTTCCEEEEEEC-CCHHHHHHHH
T ss_pred ------ceeEE--EEEEE-CCEEEEEEEEECCCccch-------------hhhHHHHhccCCEEEEEEeCCCHHHHHHHH
Confidence 00000 01111 111136889999997553 2335678899999999998665321111
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
..+..+....+.+.++++|+||+|+.+
T Consensus 106 ~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 106 HWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp HHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred HHHHHHHHhCCCCCeEEEEEECccccc
Confidence 112233344455789999999999875
No 117
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.27 E-value=1.2e-11 Score=118.13 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=69.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.-.+|+++|++|+|||||+++|+|..+ +. -.+|.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~--~~~t~------------------------------------------- 57 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRL-GQ--HVPTL------------------------------------------- 57 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCC-------------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC-Cc--cCCCC-------------------------------------------
Confidence 456899999999999999999998764 11 00010
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
| .... .+.+. ...+.++||||.... +.+...|++.+|++|+|++..+.+.. ...
T Consensus 58 ---~----~~~~--~~~~~---~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~s~-~~~ 111 (198)
T 1f6b_A 58 ---H----PTSE--ELTIA---GMTFTTFDLGGHIQA-------------RRVWKNYLPAINGIVFLVDCADHERL-LES 111 (198)
T ss_dssp ---C----CSCE--EEEET---TEEEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCGGGH-HHH
T ss_pred ---C----ceeE--EEEEC---CEEEEEEECCCcHhh-------------HHHHHHHHhcCCEEEEEEECCCHHHH-HHH
Confidence 0 1111 11121 246899999997543 23456789999999999987654311 112
Q ss_pred HHHHHHh----CCCCCceEEEeecccCCC
Q 007263 193 IKISREV----DPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 193 l~l~~~~----~~~~~rti~VltK~D~~~ 217 (610)
..+...+ ...+.|+++|+||+|+..
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 112 KEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 2222222 235789999999999975
No 118
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.26 E-value=1.7e-12 Score=121.96 Aligned_cols=68 Identities=21% Similarity=0.174 Sum_probs=46.4
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---HHHHHHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~---~~l~l~~~~~~~~~rti~VltK~ 213 (610)
.+.|+||||.... ..+...|++.+|++|+|++..+...... ..+..+....+ +.|+++|+||+
T Consensus 54 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~ 119 (186)
T 1mh1_A 54 NLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKL 119 (186)
T ss_dssp EEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECH
T ss_pred EEEEEECCCCHhH-------------HHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcc
Confidence 5789999998653 2345568899999999998765321111 12223333333 78999999999
Q ss_pred cCCCC
Q 007263 214 DLMDK 218 (610)
Q Consensus 214 D~~~~ 218 (610)
|+.+.
T Consensus 120 Dl~~~ 124 (186)
T 1mh1_A 120 DLRDD 124 (186)
T ss_dssp HHHTC
T ss_pred ccccc
Confidence 99754
No 119
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.26 E-value=1.5e-11 Score=117.29 Aligned_cols=107 Identities=9% Similarity=0.017 Sum_probs=61.2
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-cc-HHHHHHHHHhC-CCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIKISREVD-PTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~-~~~l~l~~~~~-~~~~rti~VltK~ 213 (610)
.+.++||||..... ..+...|++.+|++|+|++..+... .. ...+..+.... ..+.|+++|.||+
T Consensus 73 ~l~i~Dt~g~~~~~------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 140 (195)
T 3cbq_A 73 TLVVYDIWEQGDAG------------GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140 (195)
T ss_dssp EEEEECCCCCSGGG------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEecCCCccch------------hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeech
Confidence 57789999985421 2356678899999999998765321 11 11222222222 2478999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
|+.+...-..+.........+..|+.+++....++++.+..+
T Consensus 141 Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l 182 (195)
T 3cbq_A 141 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 182 (195)
T ss_dssp TCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred hccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHH
Confidence 997543211111111111223457777776666655554443
No 120
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.26 E-value=2.2e-12 Score=124.10 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=45.8
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---HHHHHHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~---~~l~l~~~~~~~~~rti~VltK~ 213 (610)
.+.|+||||.... ..+...|++.+|++|+|++..+.+.... ..+..++... .+.|+++|+||+
T Consensus 74 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~ 139 (207)
T 2fv8_A 74 ELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKK 139 (207)
T ss_dssp EEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECG
T ss_pred EEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEch
Confidence 5889999997653 2335578899999999998765321111 1222333332 268999999999
Q ss_pred cCCCC
Q 007263 214 DLMDK 218 (610)
Q Consensus 214 D~~~~ 218 (610)
|+.+.
T Consensus 140 Dl~~~ 144 (207)
T 2fv8_A 140 DLRSD 144 (207)
T ss_dssp GGGGC
T ss_pred hhhcc
Confidence 99754
No 121
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.26 E-value=2.2e-12 Score=122.59 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=87.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|.+|+|||||+|+|++..+ +.....++......
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~--------------------------------------- 62 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSH--------------------------------------- 62 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEE---------------------------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEE---------------------------------------
Confidence 45899999999999999999999764 22211111110000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--- 190 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--- 190 (610)
.+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+......
T Consensus 63 -------------~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 115 (194)
T 3reg_A 63 -------------VMKY-KNEEFILHLWDTAGQEEY-------------DRLRPLSYADSDVVLLCFAVNNRTSFDNIST 115 (194)
T ss_dssp -------------EEEE-TTEEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCcHHH-------------HHHhHhhccCCcEEEEEEECCCHHHHHHHHH
Confidence 0000 111234789999996543 3346678999999999998765321111
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCCCc--HHHHHcCcccccCCC-eeEeeeCChhhhhccccHH
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTD--AADILEGKSYRLKFP-WIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~ 255 (610)
..+..++... .+.|+++|+||+|+.+.... ..+.........+.. |+.+++.+..++++....+
T Consensus 116 ~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 182 (194)
T 3reg_A 116 KWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKS 182 (194)
T ss_dssp THHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHH
Confidence 1122233322 36899999999999754211 111111111222333 6677766666655544433
No 122
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.26 E-value=4.2e-12 Score=120.53 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=73.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|..|+|||||+++|++..+ +.....++......
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~--------------------------------------- 57 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAV--------------------------------------- 57 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEE---------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEE---------------------------------------
Confidence 34899999999999999999998764 32221111111000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--- 190 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--- 190 (610)
.+.+ ......+.|+||||..+. ..+...|++.+|++|+|++..+.+....
T Consensus 58 -------------~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 110 (194)
T 2atx_A 58 -------------SVTV-GGKQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKE 110 (194)
T ss_dssp -------------EEES-SSCEEEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCCcch-------------hHHHHHhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 0100 011135889999997654 2345678999999999998765321111
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+..++...+ +.|+++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 111 EWVPELKEYAP-NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp THHHHHHHHST-TCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 12223333333 6899999999999764
No 123
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.25 E-value=3.2e-13 Score=129.12 Aligned_cols=150 Identities=15% Similarity=0.222 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|.+|+|||||+|+|++..+.+......|.-.
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 70 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF----------------------------------------- 70 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSE-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceE-----------------------------------------
Confidence 356899999999999999999998765211111111000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~ 190 (610)
... .+.+ ......+.|+||||..... .+...|++.+|++|+|++..+.+... .
T Consensus 71 ---------~~~--~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 125 (199)
T 3l0i_B 71 ---------KIR--TIEL-DGKTIKLQIWDTAGQERFR-------------TITSSYYRGAHGIIVVYDVTDQESFNNVK 125 (199)
T ss_dssp ---------EEE--EEEE-TTEEEEEEEECCTTCTTCC-------------CCSCC--CCCSEEEECC-CCCSHHHHHHH
T ss_pred ---------EEE--EEEE-CCEEEEEEEEECCCcHhHH-------------HHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence 000 1111 1111358899999965532 23456889999999999876533211 1
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCCC----cHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKGT----DAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
..+..+....+.+.++++|+||+|+.+... +...+. ...+..|+.+++.+..++++++
T Consensus 126 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~vSA~~g~gv~~l~ 187 (199)
T 3l0i_B 126 QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA----DSLGIPFLETSAKNATNVEQSF 187 (199)
T ss_dssp HHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHH----HTTTCCBCCCCC---HHHHHHH
T ss_pred HHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHH----HHcCCeEEEEECCCCCCHHHHH
Confidence 122223334445789999999999975432 122221 2233456666666666555443
No 124
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.25 E-value=2.3e-12 Score=121.57 Aligned_cols=154 Identities=21% Similarity=0.295 Sum_probs=89.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|+++|+.|+|||||+|+|+|..+.+.....+|..+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~----------------------------------------- 44 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEK----------------------------------------- 44 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEE-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccc-----------------------------------------
Confidence 346899999999999999999999764211111111111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc--CCCeEEEEeecCCCccccH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATS 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~d~iil~v~~a~~d~~~~ 190 (610)
....+.+ +...+.++||||....... .. -+.+...|+. .+|+++++++..+ . .
T Consensus 45 -----------~~~~~~~---~~~~~~l~Dt~G~~~~~~~----~~---~~~~~~~~~~~~~~~~~i~v~d~~~--~--~ 99 (188)
T 2wjg_A 45 -----------KEGEFEY---NGEKFKVVDLPGVYSLTAN----SI---DEIIARDYIINEKPDLVVNIVDATA--L--E 99 (188)
T ss_dssp -----------EEEEEEE---TTEEEEEEECCCCSCCSSS----SH---HHHHHHHHHHHHCCSEEEEEEEGGG--H--H
T ss_pred -----------eEEEEEe---CCcEEEEEECCCcCccccc----cH---HHHHHHHHHhccCCCEEEEEecchh--H--H
Confidence 0001111 1246889999998764321 11 1344556664 5899999988654 1 2
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCCC---CcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHH
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDKG---TDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~~---~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
....+...+...+.++++|+||+|+.... ....++. ..++..|+.+++....+++++...+.
T Consensus 100 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~i~ 164 (188)
T 2wjg_A 100 RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE----KILGVKVVPLSAAKKMGIEELKKAIS 164 (188)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHH----HHHTSCEEECBGGGTBSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHH----HHhCCCeEEEEecCCCCHHHHHHHHH
Confidence 23334444445678999999999986322 1222221 12234677776666555555554443
No 125
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.25 E-value=1.6e-11 Score=116.44 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+-.+|+|+|++|+|||||++++++..+ +. -.+|.-+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~-~~--~~~t~~~~---------------------------------------- 58 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRL-AT--LQPTWHPT---------------------------------------- 58 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCC-CC--CCCCCSCE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-Cc--cccCCCCC----------------------------------------
Confidence 456999999999999999999998764 11 01111110
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
. -.+.+ +...+.++||||.... +.+...|++.+|++|+|++..+.+.. ...
T Consensus 59 ----------~--~~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~ 109 (190)
T 1m2o_B 59 ----------S--EELAI---GNIKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVFLVDAADPERF-DEA 109 (190)
T ss_dssp ----------E--EEEEE---TTEEEEEEECCCSGGG-------------TTSGGGGCTTCCEEEEEEETTCGGGH-HHH
T ss_pred ----------e--EEEEE---CCEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCChHHH-HHH
Confidence 0 01111 1246889999998653 23356788999999999987754321 112
Q ss_pred HHHHHHh----CCCCCceEEEeecccCCC
Q 007263 193 IKISREV----DPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 193 l~l~~~~----~~~~~rti~VltK~D~~~ 217 (610)
..+...+ ...+.|+++|+||+|+.+
T Consensus 110 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 110 RVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 2222222 235789999999999975
No 126
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.24 E-value=6.3e-12 Score=118.94 Aligned_cols=152 Identities=12% Similarity=0.112 Sum_probs=83.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
-+|+|+|.+|+|||||++++++..+ +.....++.....
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~----------------------------------------- 59 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYS----------------------------------------- 59 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEE-----------------------------------------
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceee-----------------------------------------
Confidence 4899999999999999999998764 2221111111000
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~ 194 (610)
..+.+ ......+.|+||||..... . +..|++.+|++|+|++..+.+.. .....
T Consensus 60 -----------~~~~~-~~~~~~l~i~Dt~G~~~~~-------------~-~~~~~~~~~~~ilv~d~~~~~s~-~~~~~ 112 (187)
T 3c5c_A 60 -----------SEETV-DHQPVHLRVMDTADLDTPR-------------N-CERYLNWAHAFLVVYSVDSRQSF-DSSSS 112 (187)
T ss_dssp -----------EEEEE-TTEEEEEEEEECCC---CC-------------C-THHHHTTCSEEEEEEETTCHHHH-HHHHH
T ss_pred -----------EEEEE-CCEEEEEEEEECCCCCcch-------------h-HHHHHhhCCEEEEEEECCCHHHH-HHHHH
Confidence 00001 1112357899999975431 1 14688999999999987653211 11112
Q ss_pred HHHHhC------CCCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeee-CChhhhhccccHH
Q 007263 195 ISREVD------PTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVN-RSQADINKNVDMI 255 (610)
Q Consensus 195 l~~~~~------~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~-~s~~~~~~~~~~~ 255 (610)
+...+. ..+.++++|.||+|+.+......+.........+..|+.+++ .+..++++....+
T Consensus 113 ~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l 180 (187)
T 3c5c_A 113 YLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEA 180 (187)
T ss_dssp HHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHH
Confidence 222221 247899999999999643221111111111223346677776 5666665554443
No 127
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.24 E-value=4.5e-12 Score=122.76 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=59.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
-.+|+|+|.+|+|||||+++|++..+ +.....++.....
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 72 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYM---------------------------------------- 72 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEE----------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEE----------------------------------------
Confidence 34899999999999999999998764 3221111110000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--- 190 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--- 190 (610)
..+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.+....
T Consensus 73 ------------~~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 126 (214)
T 2j1l_A 73 ------------VNLQV-KGKPVHLHIWDTAGQDDY-------------DRLRPLFYPDASVLLLCFDVTSPNSFDNIFN 126 (214)
T ss_dssp ------------EEEEE-TTEEEEEEEEEC----------------------------CEEEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCchhh-------------hHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence 00101 011125889999996542 4456678999999999998765321111
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+..++... .+.|+++|+||+|+.+.
T Consensus 127 ~~~~~~~~~~-~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 127 RWYPEVNHFC-KKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp THHHHHHHHC-SSCCEEEEEECGGGGSC
T ss_pred HHHHHHHHhC-CCCCEEEEEEChhhhcc
Confidence 1122233333 36899999999999764
No 128
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.23 E-value=8.7e-12 Score=121.06 Aligned_cols=105 Identities=20% Similarity=0.229 Sum_probs=64.1
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc--HHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.|+||+|..+. ..+...|++.++++|+|.+..+.+... ...+..++...+.+.++++|.||+
T Consensus 62 v~l~iwDtaGqe~~-------------~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~ 128 (216)
T 4dkx_A 62 IRLQLWDTAGLERF-------------RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128 (216)
T ss_dssp EEEEEECCSCTTTC-------------GGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECT
T ss_pred EEEEEEECCCchhh-------------hhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeecc
Confidence 35789999997654 556789999999999999876542211 122333344445578999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhcccc
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (610)
|+.+...-..+.........+..|+.+++.+..++++.+.
T Consensus 129 Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred chHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence 9875432111111111223344577777666665554443
No 129
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.22 E-value=2.9e-11 Score=121.56 Aligned_cols=125 Identities=20% Similarity=0.287 Sum_probs=75.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
.-++|+|+|.+|+|||||+|+|+|..+.+.+.. .+|+.+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~------------------------------------- 80 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMV------------------------------------- 80 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEE-------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEE-------------------------------------
Confidence 357999999999999999999999876433321 122222111
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHh--cCCCeEEEEeecCCCcccc
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLAT 189 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~d~iil~v~~a~~d~~~ 189 (610)
.+. .....++||||||+.+... ......+.+..|+ ..+|++|+|++.....+.
T Consensus 81 -----------------~~~-~~~~~l~iiDTpG~~~~~~------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~- 135 (270)
T 1h65_A 81 -----------------SRS-RAGFTLNIIDTPGLIEGGY------INDMALNIIKSFLLDKTIDVLLYVDRLDAYRVD- 135 (270)
T ss_dssp -----------------EEE-ETTEEEEEEECCCSEETTE------ECHHHHHHHHHHTTTCEECEEEEEEESSCCCCC-
T ss_pred -----------------EEe-eCCeEEEEEECCCCCCCcc------chHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCC-
Confidence 111 1234689999999976422 1222233445554 468999999765443332
Q ss_pred HHHHHHHHHhC---CCC--CceEEEeecccCCCCC
Q 007263 190 SDAIKISREVD---PTG--ERTFGVLTKIDLMDKG 219 (610)
Q Consensus 190 ~~~l~l~~~~~---~~~--~rti~VltK~D~~~~~ 219 (610)
.....+.+.+. ..+ .++++|+||+|+.++.
T Consensus 136 ~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 136 NLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 22223333332 212 5899999999987543
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.22 E-value=4e-11 Score=129.18 Aligned_cols=130 Identities=20% Similarity=0.328 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..++|++||.+|+|||||+|+|+|... ..++..|..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~-----~~v~~~~gt--------------------------------------- 214 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKER-----ALVSPIPGT--------------------------------------- 214 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT-----EEECCCC-----------------------------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcc-----cccCCCCCC---------------------------------------
Confidence 467999999999999999999999864 222333311
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+...... .+.+ +..++.++||||+.+..... ++.....-...+..+++.+|.++++++.... . +...
T Consensus 215 -----T~d~~~~--~i~~---~g~~~~l~Dt~G~~~~~~~~-~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~-~-~~~~ 281 (439)
T 1mky_A 215 -----TRDPVDD--EVFI---DGRKYVFVDTAGLRRKSRVE-PRTVEKYSNYRVVDSIEKADVVVIVLDATQG-I-TRQD 281 (439)
T ss_dssp ---------CCE--EEEE---TTEEEEESSCSCC------------CCSCCHHHHHHHHHCSEEEEEEETTTC-C-CHHH
T ss_pred -----cCCceEE--EEEE---CCEEEEEEECCCCccccccc-hhhHHHHHHHHHHHHHhhCCEEEEEEeCCCC-C-CHHH
Confidence 1101111 1111 12357899999985432110 0000000011135678889999999876542 2 2233
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
..++..+...+.++++|+||+|+.+..
T Consensus 282 ~~i~~~l~~~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 282 QRMAGLMERRGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSTTG
T ss_pred HHHHHHHHHcCCCEEEEEECccCCCch
Confidence 445555555689999999999998643
No 131
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.22 E-value=2.8e-12 Score=124.65 Aligned_cols=110 Identities=13% Similarity=0.126 Sum_probs=66.7
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-c-HHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-SDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~-~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..+.|+||||.... ..+...|++.+|++|+|++..+.... . ...+..+.... .+.++++|+||+
T Consensus 64 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~ 129 (221)
T 3gj0_A 64 IKFNVWDTAGQEKF-------------GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKV 129 (221)
T ss_dssp EEEEEEEECSGGGT-------------SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECT
T ss_pred EEEEEEeCCChHHH-------------hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECC
Confidence 35889999996543 22356788999999999987653211 1 11222223322 368999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHHHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRE 261 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e 261 (610)
|+.+..... .........+..|+.+++.+..+++..+..+.....+
T Consensus 130 Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 130 DIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp TSSSCSSCG--GGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHT
T ss_pred ccccccccH--HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 997543211 1111122334567777777777777666665544433
No 132
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.21 E-value=9.4e-11 Score=122.76 Aligned_cols=125 Identities=21% Similarity=0.265 Sum_probs=74.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccc-cccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
..+.|+++|.+|+|||||+|+|+|..+ ..+. ..+|+.+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~------------------------------------- 207 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVG------------------------------------- 207 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEE-------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEE-------------------------------------
Confidence 678999999999999999999999763 2211 1122211000
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc---cc
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD---LA 188 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d---~~ 188 (610)
. +.. ....+.++||||+....... ...+. ...+..+...+|.+++|+++.+.. +.
T Consensus 208 ---------------~--~~~-~~~~~~l~Dt~G~~~~~~~~-~~~~~---~~~~~~~~~~ad~illV~D~s~~~~~~~~ 265 (357)
T 2e87_A 208 ---------------Q--FED-GYFRYQIIDTPGLLDRPISE-RNEIE---KQAILALRYLGNLIIYIFDPSEHCGFPLE 265 (357)
T ss_dssp ---------------E--EEE-TTEEEEEEECTTTSSSCSTT-SCHHH---HHHHHGGGGTCSEEEEEECTTCTTSSCHH
T ss_pred ---------------E--EEe-cCceEEEEeCCCccccchhh-hhHHH---HHHHHHHHhcCCEEEEEEeCCccccCCHH
Confidence 0 111 12358899999997643221 11111 223345556799999999865432 22
Q ss_pred cH-HHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 189 TS-DAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 189 ~~-~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
.. ..+..+....+ +.++++|+||+|+.+.
T Consensus 266 ~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 266 EQIHLFEEVHGEFK-DLPFLVVINKIDVADE 295 (357)
T ss_dssp HHHHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred HHHHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence 21 22222333223 7899999999998754
No 133
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.85 E-value=1.2e-12 Score=125.51 Aligned_cols=70 Identities=23% Similarity=0.199 Sum_probs=46.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCC--CCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPT--GERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~--~~rti~VltK~ 213 (610)
..+.|+||||..+. ..+...|++.+|++|+|++..+..........+...+... +.|+++|+||+
T Consensus 78 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~ 144 (204)
T 3th5_A 78 VNLGLWDTAGQEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 144 (204)
Confidence 35779999997543 4556778999999999998665322111111233333322 78999999999
Q ss_pred cCCCC
Q 007263 214 DLMDK 218 (610)
Q Consensus 214 D~~~~ 218 (610)
|+.+.
T Consensus 145 Dl~~~ 149 (204)
T 3th5_A 145 DLRDD 149 (204)
Confidence 99754
No 134
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.20 E-value=1.6e-12 Score=121.75 Aligned_cols=69 Identities=28% Similarity=0.253 Sum_probs=45.0
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---HHHHHHHHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~---~~l~l~~~~~~~~~rti~VltK 212 (610)
..+.|+||||..+. ..+...|++.+|++|+|++..+.+.... ..+..++...+ +.|+++|+||
T Consensus 56 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 121 (182)
T 3bwd_D 56 VNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTK 121 (182)
T ss_dssp --CEEECCCC-CTT-------------TTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEEC
T ss_pred EEEEEEECCCChhh-------------hhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEec
Confidence 46789999997553 2345678999999999998765321111 12223333333 7899999999
Q ss_pred ccCCCC
Q 007263 213 IDLMDK 218 (610)
Q Consensus 213 ~D~~~~ 218 (610)
+|+.+.
T Consensus 122 ~Dl~~~ 127 (182)
T 3bwd_D 122 LDLRDD 127 (182)
T ss_dssp HHHHTC
T ss_pred hhhhcC
Confidence 998754
No 135
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.20 E-value=6.2e-12 Score=121.82 Aligned_cols=118 Identities=15% Similarity=0.170 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|..|+|||||+++|++..+ +.....++.....
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 65 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYT--------------------------------------- 65 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEE---------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEE---------------------------------------
Confidence 455899999999999999999998765 2211111100000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc---
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--- 189 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~--- 189 (610)
..+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.....
T Consensus 66 -------------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 118 (214)
T 3q3j_B 66 -------------ACLET-EEQRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPETVDSAL 118 (214)
T ss_dssp -------------EEEEC---CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCTHHHHHHH
T ss_pred -------------EEEEE-CCEEEEEEEEECCCCHhH-------------HHHHHHHcCCCeEEEEEEECcCHHHHHHHH
Confidence 00101 111235889999997553 234567899999999999877543211
Q ss_pred HHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 190 SDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 190 ~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
...+..++... .+.++++|.||+|+.+.
T Consensus 119 ~~~~~~i~~~~-~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 119 KKWRTEILDYC-PSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp THHHHHHHHHC-TTSEEEEEEECGGGGGC
T ss_pred HHHHHHHHHhC-CCCCEEEEEEChhhccc
Confidence 12233344443 36899999999999753
No 136
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.20 E-value=3.3e-12 Score=123.16 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=72.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|++|+|||||++++++..+ +.....++.....
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 47 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFS---------------------------------------- 47 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEE----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEE----------------------------------------
Confidence 46899999999999999999998764 3221111111100
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--- 190 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--- 190 (610)
..+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.+....
T Consensus 48 ------------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~ 101 (212)
T 2j0v_A 48 ------------ANVAV-DGQIVNLGLWDTAGQEDY-------------SRLRPLSYRGADIFVLAFSLISKASYENVLK 101 (212)
T ss_dssp ------------EEEEC-SSCEEEEEEECCCCCCCC-------------CC--CGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 00111 111236889999998654 2235578999999999998765321111
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+..++...+ +.|+++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 102 KWMPELRRFAP-NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp THHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHhCC-CCCEEEEEeCHHhhhC
Confidence 12223333333 6899999999998754
No 137
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.20 E-value=3.2e-12 Score=122.84 Aligned_cols=69 Identities=20% Similarity=0.170 Sum_probs=46.5
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---HHHHHHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~---~~l~l~~~~~~~~~rti~VltK~ 213 (610)
.+.|+||||.... ..+...|++.+|++|+|++..+...... ..+..++... .+.++++|+||+
T Consensus 79 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~ 144 (204)
T 4gzl_A 79 NLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 144 (204)
T ss_dssp EEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECH
T ss_pred EEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEech
Confidence 4679999998553 2345678999999999998765322111 1122333333 368999999999
Q ss_pred cCCCCC
Q 007263 214 DLMDKG 219 (610)
Q Consensus 214 D~~~~~ 219 (610)
|+.+..
T Consensus 145 Dl~~~~ 150 (204)
T 4gzl_A 145 DLRDDK 150 (204)
T ss_dssp HHHTCH
T ss_pred hhccch
Confidence 998643
No 138
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.18 E-value=1.3e-11 Score=116.22 Aligned_cols=117 Identities=20% Similarity=0.215 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|++|+|||||+++|++..+ +... .+|......
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~-~~t~~~~~~-------------------------------------- 45 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENY-VPTVFENYT-------------------------------------- 45 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSC-CCCSEEEEE--------------------------------------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCC-CCccceeEE--------------------------------------
Confidence 346899999999999999999998765 3211 111111000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~-- 190 (610)
..+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+......
T Consensus 46 -------------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 98 (184)
T 1m7b_A 46 -------------ASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVL 98 (184)
T ss_dssp -------------EEEEC-SSCEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEE-CCEEEEEEEEECCCChhh-------------hhhHHhhcCCCcEEEEEEECCCHHHHHHHH
Confidence 00001 111235889999997543 2234568899999999998765321111
Q ss_pred -HHHHHHHHhCCCCCceEEEeecccCCC
Q 007263 191 -DAIKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 191 -~~l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
..+..++...+ +.|+++|.||+|+.+
T Consensus 99 ~~~~~~i~~~~~-~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 99 KKWKGEIQEFCP-NTKMLLVGCKSDLRT 125 (184)
T ss_dssp HTHHHHHHHHCT-TCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHCC-CCCEEEEEEcchhhc
Confidence 11122333333 689999999999974
No 139
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.18 E-value=4.5e-11 Score=111.57 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=67.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
.-+|+|+|++|+|||||++++++..+-+ . .+|-....
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~-~--~~t~~~~~---------------------------------------- 43 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-L--EKTESEQY---------------------------------------- 43 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC-C--SSCSSSEE----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-c--CCCcceeE----------------------------------------
Confidence 3589999999999999999999877622 1 11110000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
...+.+ ......+.|+||||..+ ..|++++|++|+|++..+... .....
T Consensus 44 -----------~~~~~~-~~~~~~l~i~Dt~G~~~------------------~~~~~~~d~~ilv~D~~~~~s-~~~~~ 92 (178)
T 2iwr_A 44 -----------KKEMLV-DGQTHLVLIREEAGAPD------------------AKFSGWADAVIFVFSLEDENS-FQAVS 92 (178)
T ss_dssp -----------EEEEEE-TTEEEEEEEEECSSSCC------------------HHHHHHCSEEEEEEETTCHHH-HHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCCch------------------hHHHHhCCEEEEEEECcCHHH-HHHHH
Confidence 001111 11123578999999643 357888999999998765321 11111
Q ss_pred H---HHHHhC---CCCCceEEEeecccCC
Q 007263 194 K---ISREVD---PTGERTFGVLTKIDLM 216 (610)
Q Consensus 194 ~---l~~~~~---~~~~rti~VltK~D~~ 216 (610)
. .+..+. ..+.|+++|.||+|+.
T Consensus 93 ~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 93 RLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp HHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 1 233332 2468999999999985
No 140
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.18 E-value=9.9e-11 Score=117.13 Aligned_cols=125 Identities=15% Similarity=0.220 Sum_probs=74.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
.-.+|+|+|..|+|||||+|+|+|..+.+.+.. .+|..+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~------------------------------------- 77 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMV------------------------------------- 77 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEE-------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEE-------------------------------------
Confidence 356899999999999999999999875222211 112211111
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc--CCCeEEEEeecCCCcccc
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLAT 189 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~d~iil~v~~a~~d~~~ 189 (610)
. +.. +...++||||||+.+... ......+.+..++. .+|++++|++.....+..
T Consensus 78 ---------------~--~~~-~~~~l~liDTpG~~~~~~------~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~ 133 (262)
T 3def_A 78 ---------------S--RTM-GGFTINIIDTPGLVEAGY------VNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDE 133 (262)
T ss_dssp ---------------E--EEE-TTEEEEEEECCCSEETTE------ECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCH
T ss_pred ---------------E--EEE-CCeeEEEEECCCCCCccc------chHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCH
Confidence 1 111 223789999999976432 22233344555553 678888887654433332
Q ss_pred H--HHHHHHHHhCCC--CCceEEEeecccCCCC
Q 007263 190 S--DAIKISREVDPT--GERTFGVLTKIDLMDK 218 (610)
Q Consensus 190 ~--~~l~l~~~~~~~--~~rti~VltK~D~~~~ 218 (610)
. ..++.++..... ..++++|+||+|+.+.
T Consensus 134 ~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 134 LDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 2 333334433222 2489999999998744
No 141
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.17 E-value=3.1e-11 Score=124.91 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=84.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhhc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (610)
+|+|+|.+|+|||||+++|++..+ +.. .+|.-...
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~-~~~--~pT~~~~~------------------------------------------ 201 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNV------------------------------------------ 201 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC-EEE--EEETTEEE------------------------------------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCC-CCc--ccccceEE------------------------------------------
Confidence 799999999999999999998764 111 01111100
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHH
Q 007263 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (610)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l 195 (610)
.. +.. ....++|+||||.... ..+...|++.+|++|+|++..+.+........+
T Consensus 202 ----------~~--~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~ 255 (329)
T 3o47_A 202 ----------ET--VEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL 255 (329)
T ss_dssp ----------EE--EEE-TTEEEEEEECC------------------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHH
T ss_pred ----------EE--Eec-CcEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCchHHHHHHHHHH
Confidence 00 111 2246899999995432 334778899999999999876543222222223
Q ss_pred HHHhC---CCCCceEEEeecccCCCCCC--cHHHHHcCc-ccccCCCeeEeeeCChhhhhccccHH
Q 007263 196 SREVD---PTGERTFGVLTKIDLMDKGT--DAADILEGK-SYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 196 ~~~~~---~~~~rti~VltK~D~~~~~~--~~~~~l~~~-~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
...+. ..+.|+++|+||+|+.+... .....+... .......|+.++..+..++++++..+
T Consensus 256 ~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 256 MRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred HHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 33222 23789999999999976542 122222111 11222345666666656555554443
No 142
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.16 E-value=2.1e-11 Score=117.35 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=71.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|..|+|||||+++|++..+ +... .+|......
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~-~~t~~~~~~--------------------------------------- 66 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCF-PENY-VPTVFENYT--------------------------------------- 66 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSC-CCCSEEEEE---------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCc-CCccceeEE---------------------------------------
Confidence 45899999999999999999999765 2211 111111000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH---
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--- 190 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--- 190 (610)
..+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+......
T Consensus 67 ------------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~ 120 (205)
T 1gwn_A 67 ------------ASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVLK 120 (205)
T ss_dssp ------------EEEES-SSSEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEeCCCcHhh-------------hHHHHhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 00000 111235889999997543 2234568899999999998765321111
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
..+..++...+ +.++++|.||+|+.+
T Consensus 121 ~~~~~i~~~~~-~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 121 KWKGEIQEFCP-NTKMLLVGCKSDLRT 146 (205)
T ss_dssp THHHHHHHHCT-TCEEEEEEECGGGGG
T ss_pred HHHHHHHHHCC-CCCEEEEEechhhcc
Confidence 11122333333 689999999999974
No 143
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.16 E-value=7.4e-12 Score=132.57 Aligned_cols=37 Identities=24% Similarity=0.191 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccE
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~ 72 (610)
+|++||.+|+|||||+|+|+|..........||+-|+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~ 38 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEAN 38 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCc
Confidence 6899999999999999999998631112223555553
No 144
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.16 E-value=5.2e-11 Score=122.02 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=75.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
.+|+++|.+|+|||||+|+++|... ..++..|
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~-----~~~~~~~------------------------------------------- 35 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYS-----AFDTRRL------------------------------------------- 35 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCC-----TGGGGGC-------------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-----CccccCc-------------------------------------------
Confidence 4799999999999999999998632 1122121
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--HH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DA 192 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~~ 192 (610)
|.+.+..... +.+ .+...+.++||||..+. .......+...|++.+|++|+|++..+...... ..
T Consensus 36 -~~Ti~~~~~~--~~~--~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~ 102 (307)
T 3r7w_A 36 -GATIDVEHSH--LRF--LGNMTLNLWDCGGQDVF--------MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIF 102 (307)
T ss_dssp -CCCCSEEEEE--EEE--TTTEEEEEEEECCSHHH--------HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHH
T ss_pred -CCccceEEEE--EEe--CCceEEEEEECCCcHHH--------hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHH
Confidence 2222211111 111 12346899999997542 111223567788999999999998776431111 11
Q ss_pred HHHHHHhC--CCCCceEEEeecccCCC
Q 007263 193 IKISREVD--PTGERTFGVLTKIDLMD 217 (610)
Q Consensus 193 l~l~~~~~--~~~~rti~VltK~D~~~ 217 (610)
......+. ..+.|+++|+||+|+.+
T Consensus 103 ~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 103 AKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHHHHHHHhCCCCeEEEEEecccccc
Confidence 12222221 23689999999999985
No 145
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.14 E-value=1.2e-10 Score=112.54 Aligned_cols=115 Identities=22% Similarity=0.385 Sum_probs=74.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
...++|+|+|.+|+|||||+++|++..+.+. ..+..|+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~------------------------------------ 50 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA------------------------------------ 50 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEET------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEE------------------------------------
Confidence 3679999999999999999999999875221 1122221100
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcC----CCeEEEEeecC-CCc
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK----PNCIILAISPA-NQD 186 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~----~d~iil~v~~a-~~d 186 (610)
.+ ....+.++||||.... +.++..|+.. +|++|+|++.+ +.+
T Consensus 51 --------~~------------~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~~i~v~D~~~~~~ 97 (218)
T 1nrj_B 51 --------DY------------DGSGVTLVDFPGHVKL-------------RYKLSDYLKTRAKFVKGLIFMVDSTVDPK 97 (218)
T ss_dssp --------TG------------GGSSCEEEECCCCGGG-------------THHHHHHHHHHGGGEEEEEEEEETTSCTT
T ss_pred --------Ee------------eCceEEEEECCCcHHH-------------HHHHHHHHHhccccCCEEEEEEECCCChH
Confidence 00 2347899999998653 2344555554 89999999877 322
Q ss_pred cccHHHHHHHHHh-------CCCCCceEEEeecccCCCCC
Q 007263 187 LATSDAIKISREV-------DPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 187 ~~~~~~l~l~~~~-------~~~~~rti~VltK~D~~~~~ 219 (610)
... ....+...+ .+.+.|+++|+||+|+....
T Consensus 98 ~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 98 KLT-TTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp CCH-HHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHH-HHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 211 122222211 34679999999999997654
No 146
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.12 E-value=1.3e-10 Score=109.63 Aligned_cols=101 Identities=10% Similarity=0.040 Sum_probs=58.0
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCC----CCCceEEEeec
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP----TGERTFGVLTK 212 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~----~~~rti~VltK 212 (610)
.+.|+||||.... . |++.+|++|+|++..+... -.....+...+.. .+.++++|.||
T Consensus 68 ~l~i~Dt~G~~~~-------------~-----~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~piilv~nK 128 (184)
T 3ihw_A 68 LLLIRDEGGPPEL-------------Q-----FAAWVDAVVFVFSLEDEIS-FQTVYNYFLRLCSFRNASEVPMVLVGTQ 128 (184)
T ss_dssp EEEEEECSSSCCH-------------H-----HHHHCSEEEEEEETTCHHH-HHHHHHHHHHHHTTSCGGGSCEEEEEEC
T ss_pred EEEEEECCCChhh-------------h-----eecCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 5788999997542 1 7888999999998765321 1122223333322 46799999999
Q ss_pred ccCCCCCCc--HHHHHcCcccccC-CCeeEeeeCChhhhhccccHHH
Q 007263 213 IDLMDKGTD--AADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 213 ~D~~~~~~~--~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
+|+...... ..+.........+ ..|+.+++.+..++++.+..+.
T Consensus 129 ~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~ 175 (184)
T 3ihw_A 129 DAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVA 175 (184)
T ss_dssp TTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHH
T ss_pred cccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHH
Confidence 998532211 0111111112222 4677777776666665555443
No 147
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.12 E-value=1e-10 Score=113.09 Aligned_cols=107 Identities=11% Similarity=0.045 Sum_probs=57.3
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-ccH-HHHHHHHHh-CCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATS-DAIKISREV-DPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~~-~~l~l~~~~-~~~~~rti~VltK~ 213 (610)
.+.++||+|.... -..+...|.+.+|++|+|++..+.+. ... .....+... ...+.|+|+|.||+
T Consensus 88 ~l~~~Dt~g~~~~------------~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 88 TIILLDMWENKGE------------NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155 (211)
T ss_dssp EEEEECCTTTTHH------------HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECT
T ss_pred EEEEeecCCCcch------------hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 5678999995431 13345667888999999998664321 111 111112221 23478999999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
|+.+...-..+.........+..|+.+++.+..++++++..+
T Consensus 156 DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l 197 (211)
T 2g3y_A 156 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197 (211)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred HHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 986432110110000011223346666666655555544443
No 148
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.11 E-value=2.7e-10 Score=124.73 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=88.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
.+|+|||.+|+|||||+|+|++..+ +. ..+|.-+..-
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~---------------------------------------- 359 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVE---------------------------------------- 359 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEE----------------------------------------
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEE----------------------------------------
Confidence 4899999999999999999998764 11 1112211100
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHH
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~ 194 (610)
. +.. ....+.|+||||.... ..+...|++.+|++|+|++..+.+........
T Consensus 360 ------------~--~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~ 411 (497)
T 3lvq_E 360 ------------T--VTY-KNVKFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQE 411 (497)
T ss_dssp ------------E--EES-SSCEEEEEEECCCGGG-------------SGGGGGGGTTCCEEEEEEETTCGGGHHHHHHH
T ss_pred ------------E--EEe-CCEEEEEEECCCcHHH-------------HHHHHHHhccCCEEEEEEECcchhHHHHHHHH
Confidence 0 111 2346899999996553 33467899999999999987754321111111
Q ss_pred HHHHh---CCCCCceEEEeecccCCCCCCcHHHHHc--Cccc--ccCCCeeEeeeCChhhhhccccHHH
Q 007263 195 ISREV---DPTGERTFGVLTKIDLMDKGTDAADILE--GKSY--RLKFPWIGVVNRSQADINKNVDMIA 256 (610)
Q Consensus 195 l~~~~---~~~~~rti~VltK~D~~~~~~~~~~~l~--~~~~--~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (610)
+...+ ...+.|+|+|+||+|+.+... ..++.. +... .....|+.++..+..++++++..+.
T Consensus 412 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 479 (497)
T 3lvq_E 412 LHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 479 (497)
T ss_dssp HHHHHTSGGGTTCEEEEEEECCSSSSCCC-HHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHhhhhhcCCCcEEEEEECCCCCcCCC-HHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHH
Confidence 22222 224789999999999975432 222211 1111 1112355566666666665555443
No 149
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.10 E-value=1.5e-11 Score=134.24 Aligned_cols=117 Identities=15% Similarity=0.269 Sum_probs=77.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..|.|+|+|..++|||||+++|.+..+.....+..|...
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i----------------------------------------- 41 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI----------------------------------------- 41 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE-----------------------------------------
Confidence 579999999999999999999998764222111111111
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
.... +..++...++||||||..+.. .+...+++.+|.+|||+++... .....
T Consensus 42 ---------~~~~----v~~~~g~~i~~iDTPGhe~f~-------------~~~~~~~~~aD~vILVVDa~dg--~~~qt 93 (537)
T 3izy_P 42 ---------GAFL----VSLPSGEKITFLDTPGHAAFS-------------AMRARGTQVTDIVILVVAADDG--VMKQT 93 (537)
T ss_dssp ---------TSCC----BCSSCSSCCBCEECSSSCCTT-------------TSBBSSSBSBSSCEEECBSSSC--CCHHH
T ss_pred ---------eEEE----EEeCCCCEEEEEECCChHHHH-------------HHHHHHHccCCEEEEEEECCCC--ccHHH
Confidence 1110 112233479999999965532 2345678899999999976542 23344
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
...+..+...+.|+|+|+||+|+.+.
T Consensus 94 ~e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 94 VESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp HHHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred HHHHHHHHHcCCcEEEEEeccccccc
Confidence 44555555668899999999999753
No 150
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.09 E-value=4.1e-10 Score=124.41 Aligned_cols=109 Identities=6% Similarity=0.070 Sum_probs=65.5
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
..+.++||||.... ..+...|++++|++|+|++.++.+ .....+..+....+ +.|+|+|+||+|+
T Consensus 98 ~~~~i~Dt~G~e~~-------------~~~~~~~l~~~d~ii~V~D~s~~~-~~~~~~~~l~~~~~-~~pvilV~NK~Dl 162 (535)
T 3dpu_A 98 CLFHFWDFGGQEIM-------------HASHQFFMTRSSVYMLLLDSRTDS-NKHYWLRHIEKYGG-KSPVIVVMNKIDE 162 (535)
T ss_dssp CEEEEECCCSCCTT-------------TTTCHHHHHSSEEEEEEECGGGGG-GHHHHHHHHHHHSS-SCCEEEEECCTTT
T ss_pred EEEEEEECCcHHHH-------------HHHHHHHccCCcEEEEEEeCCCch-hHHHHHHHHHHhCC-CCCEEEEEECCCc
Confidence 46899999995443 223456788999999999876531 12233334444443 5899999999999
Q ss_pred CCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHHHHHH
Q 007263 216 MDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 259 (610)
Q Consensus 216 ~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (610)
.+......+.+.......+..++.+++.+..+++++...+....
T Consensus 163 ~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 163 NPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp CTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 76443212222222334455688888888888877776655443
No 151
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.08 E-value=1.7e-10 Score=128.63 Aligned_cols=148 Identities=19% Similarity=0.225 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|++||.+|+|||||+|+|++... .+..+.- ..+.......+..-.++..+......+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~-----~i~~~~i------------~~~~~~~~~~g~~~~~~a~~~d~~~~e-- 226 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLN-----IVNQSQL------------RKLQRESETMGKSSFKFAWIMDQTNEE-- 226 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSS-----CSCCHHH------------HHHHHHSSCSSSSCCSSSHHHHHHHHH--
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcC-----CccHHHH------------HHHHhhhhhccccccceeeeeccchhh--
Confidence 456899999999999999999998642 1111100 000000000011112233333333322
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-----
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL----- 187 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~----- 187 (610)
+..|.+...... .+ .. ....++||||||..+. ...+..+++.+|++|||+++.+..+
T Consensus 227 ~~~GiTid~~~~--~~--~~-~~~~~~iiDTPG~e~f-------------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~ 288 (611)
T 3izq_1 227 RERGVTVSICTS--HF--ST-HRANFTIVDAPGHRDF-------------VPNAIMGISQADMAILCVDCSTNAFESGFD 288 (611)
T ss_dssp HHTTTCCSCSCC--EE--EC-SSCEEEEEECCSSSCH-------------HHHHTTTSSCCSEEEEEEECSHHHHHTTCC
T ss_pred hhCCeeEeeeeE--EE--ec-CCceEEEEECCCCccc-------------HHHHHHHHhhcCceEEEEECCCCcccccch
Confidence 233544333222 22 22 3457999999998542 4556778899999999998764211
Q ss_pred ccHHHHHHHHHhCCCC-CceEEEeecccCCC
Q 007263 188 ATSDAIKISREVDPTG-ERTFGVLTKIDLMD 217 (610)
Q Consensus 188 ~~~~~l~l~~~~~~~~-~rti~VltK~D~~~ 217 (610)
........+..+...+ .++|+|+||+|+.+
T Consensus 289 ~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 289 LDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp TTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred hhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 0112222222233334 45999999999986
No 152
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.06 E-value=3.6e-10 Score=120.32 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=47.5
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-c-ccHHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~-~~~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..++||||||..+. ......++..+|++||++++.+.. . .+.+.+.+++.... .++++|+||+
T Consensus 75 ~~~~iiDtPGh~~~-------------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK~ 139 (403)
T 3sjy_A 75 RRISFIDAPGHEVL-------------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKV 139 (403)
T ss_dssp EEEEEEECCCCGGG-------------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECG
T ss_pred ceEEEEECCCcHHH-------------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEECc
Confidence 36899999996442 445677889999999999876532 1 22334444444432 5899999999
Q ss_pred cCCCC
Q 007263 214 DLMDK 218 (610)
Q Consensus 214 D~~~~ 218 (610)
|+.+.
T Consensus 140 Dl~~~ 144 (403)
T 3sjy_A 140 DVVSK 144 (403)
T ss_dssp GGSCH
T ss_pred cccch
Confidence 99854
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.06 E-value=9.4e-11 Score=127.74 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=61.0
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc--------ccHHHHHHHHHhCCCCCce
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--------ATSDAIKISREVDPTGERT 206 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~--------~~~~~l~l~~~~~~~~~rt 206 (610)
...++||||||..+. ...+..+++.+|++|||+++.+... .+.+.+.++.... ..++
T Consensus 110 ~~~~~iiDTPG~~~f-------------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~--~~~i 174 (483)
T 3p26_A 110 RANFTIVDAPGHRDF-------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG--IHNL 174 (483)
T ss_dssp SCEEEEECCCCCGGG-------------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT--CCCE
T ss_pred CceEEEEECCCcHHH-------------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC--CCcE
Confidence 457999999998553 4557788999999999998765321 1223333444332 2469
Q ss_pred EEEeecccCCCCCCcH----HHHHcCccccc-----CCCeeEeeeCChhhhhccc
Q 007263 207 FGVLTKIDLMDKGTDA----ADILEGKSYRL-----KFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 207 i~VltK~D~~~~~~~~----~~~l~~~~~~l-----~~g~~~v~~~s~~~~~~~~ 252 (610)
|+|+||+|+.+..... .+.+......+ ...|+.+++....+++++.
T Consensus 175 IvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~ 229 (483)
T 3p26_A 175 IIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229 (483)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred EEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence 9999999998632211 11111110011 2356666766666665544
No 154
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.9e-10 Score=120.15 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
-.++|++||.||+|||||+|+|+|..........||+-|..-.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~------------------------------------- 113 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGV------------------------------------- 113 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEE-------------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEE-------------------------------------
Confidence 4569999999999999999999998754444445666663211
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+.+ ....+.|+||||+...+..+ ... -+.+.+.++.+|+|+++++..+ ....-+.
T Consensus 114 ---------------~~~---~~~~i~l~D~pGl~~~a~~~--~~~----g~~~l~~i~~ad~il~vvD~~~-p~~~~~~ 168 (376)
T 4a9a_A 114 ---------------IRY---KGAKIQMLDLPGIIDGAKDG--RGR----GKQVIAVARTCNLLFIILDVNK-PLHHKQI 168 (376)
T ss_dssp ---------------EEE---TTEEEEEEECGGGCCC-------CH----HHHHHHHHHHCSEEEEEEETTS-HHHHHHH
T ss_pred ---------------EEe---CCcEEEEEeCCCccCCchhh--hHH----HHHHHHHHHhcCccccccccCc-cHHHHHH
Confidence 111 22358899999998754332 111 2335567889999999998653 1111111
Q ss_pred H-HHHHHhCC--CCCceEEEeecccCC
Q 007263 193 I-KISREVDP--TGERTFGVLTKIDLM 216 (610)
Q Consensus 193 l-~l~~~~~~--~~~rti~VltK~D~~ 216 (610)
+ .-+..++. ...|.++|+||.|.-
T Consensus 169 i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 169 IEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 1 11122221 246889999999963
No 155
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.04 E-value=1.7e-10 Score=118.99 Aligned_cols=118 Identities=22% Similarity=0.208 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+++|.+|+|||||++++++..+ +.....++.......
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~------------------------------------- 195 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSAN------------------------------------- 195 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEE-------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEE-------------------------------------
Confidence 567999999999999999999997664 222111111110000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~-- 190 (610)
+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+......
T Consensus 196 ---------------~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 246 (332)
T 2wkq_A 196 ---------------VMV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFHHVR 246 (332)
T ss_dssp ---------------EEE-TTEEEEEEEEEECCCGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEeCCCchhh-------------hHHHHHhccCCCEEEEEEeCCCHHHHHHHH
Confidence 000 011124679999997654 2345678999999999998765321111
Q ss_pred -HHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 191 -DAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 191 -~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+..++...+ +.|+++|+||+|+.+.
T Consensus 247 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 247 AKWYPEVRHHCP-NTPIILVGTKLDLRDD 274 (332)
T ss_dssp HTHHHHHHHHCT-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHhhCC-CCcEEEEEEchhcccc
Confidence 11223333333 7899999999999754
No 156
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.04 E-value=2.2e-10 Score=124.57 Aligned_cols=159 Identities=15% Similarity=0.210 Sum_probs=86.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
-++|+++|..++|||||+++|+|.+.. ....+.+ .++
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~----~~~d~~~---------------------------------------~e~ 55 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIAST----SAHDKLP---------------------------------------ESQ 55 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC-------------------------------------------------------
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcc----ccccccc---------------------------------------ccc
Confidence 458999999999999999999987510 0000011 011
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-cccHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDA 192 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~~~~~~ 192 (610)
..|.+....... +.+ +...++||||||..+ .......++..+|++|||+++.+.- ..+.+.
T Consensus 56 ~~GiTi~~~~~~--~~~---~~~~i~iiDtPGh~~-------------~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~ 117 (482)
T 1wb1_A 56 KRGITIDIGFSA--FKL---ENYRITLVDAPGHAD-------------LIRAVVSAADIIDLALIVVDAKEGPKTQTGEH 117 (482)
T ss_dssp --------CCCE--EEE---TTEEEEECCCSSHHH-------------HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHH
T ss_pred cCccEEecceEE--EEE---CCEEEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEEecCCCccHHHHHH
Confidence 112222222111 111 234699999999633 2345677889999999999865421 122333
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCCCC--c----HHHHHcCc-ccccCCCeeEeeeCChhhhhccccHHHH
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDKGT--D----AADILEGK-SYRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~~~--~----~~~~l~~~-~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
+.+++. .+.|.|+|+||+|+.++.. . ..+.+... ... ...++.+++....+++.+...+..
T Consensus 118 l~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~-~~~ii~vSA~~g~gI~~L~~~L~~ 185 (482)
T 1wb1_A 118 MLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLK-NSSIIPISAKTGFGVDELKNLIIT 185 (482)
T ss_dssp HHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGG-GCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccc-cceEEEEECcCCCCHHHHHHHHHH
Confidence 444443 4688899999999985321 0 11222111 111 345666666655555555444433
No 157
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.03 E-value=1.4e-10 Score=110.23 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=41.9
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-ccH-HHHHHHHHh-CCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATS-DAIKISREV-DPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~~-~~l~l~~~~-~~~~~rti~VltK~ 213 (610)
.+.++||+|.... . +.+...|.+.+|++|+|++..+.+. ... .....+... ...+.++++|.||+
T Consensus 57 ~l~~~Dt~~~~~~-----~-------~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 57 TIILLDMWENKGE-----N-------EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEECCCCC----------------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEeccCcch-----h-------hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence 4678999996431 0 1233557778999999988665321 111 122223333 34578999999999
Q ss_pred cCCC
Q 007263 214 DLMD 217 (610)
Q Consensus 214 D~~~ 217 (610)
|+..
T Consensus 125 Dl~~ 128 (192)
T 2cjw_A 125 DLVR 128 (192)
T ss_dssp TCGG
T ss_pred hhhc
Confidence 9864
No 158
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.03 E-value=2.6e-10 Score=122.64 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=46.6
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc--------ccHHHHHHHHHhCCCCCc-
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--------ATSDAIKISREVDPTGER- 205 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~--------~~~~~l~l~~~~~~~~~r- 205 (610)
...++||||||..+. ...+..+++.+|++||++++..... .+.+.+.++. ..+.+
T Consensus 94 ~~~~~iiDTPGh~~f-------------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~---~~~v~~ 157 (439)
T 3j2k_7 94 KKHFTILDAPGHKSF-------------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK---TAGVKH 157 (439)
T ss_pred CeEEEEEECCChHHH-------------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH---HcCCCe
Confidence 347999999996442 3446677889999999998765332 2333333333 34566
Q ss_pred eEEEeecccCCC
Q 007263 206 TFGVLTKIDLMD 217 (610)
Q Consensus 206 ti~VltK~D~~~ 217 (610)
+|+|+||+|+.+
T Consensus 158 iIvviNK~Dl~~ 169 (439)
T 3j2k_7 158 LIVLINKMDDPT 169 (439)
T ss_pred EEEEeecCCCcc
Confidence 999999999864
No 159
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.03 E-value=7.4e-11 Score=111.14 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=42.7
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHH---HHhCCCCCceEEEeec
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS---REVDPTGERTFGVLTK 212 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~---~~~~~~~~rti~VltK 212 (610)
..+.++||||..+. ..+...|++.++++++|++..+..-.-.....+. +... .+.++++|.||
T Consensus 56 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK 121 (184)
T 2zej_A 56 LVLNVWDFAGREEF-------------YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTH 121 (184)
T ss_dssp CEEEEEEECSHHHH-------------HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEEC
T ss_pred eEEEEEecCCCHHH-------------HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEEC
Confidence 46889999996442 3345677888999988887654211111111122 2222 26899999999
Q ss_pred ccCCC
Q 007263 213 IDLMD 217 (610)
Q Consensus 213 ~D~~~ 217 (610)
+|+.+
T Consensus 122 ~Dl~~ 126 (184)
T 2zej_A 122 LDVSD 126 (184)
T ss_dssp GGGCC
T ss_pred CCccc
Confidence 99864
No 160
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.00 E-value=7.1e-10 Score=121.52 Aligned_cols=138 Identities=14% Similarity=0.217 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+.+.|+++|.+|+|||||+|+|++..-.....|.+.... ... ..+.+.... +
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~--------------------~~~------~~~~d~~~~--e 63 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRK--------------------AAR------HATSDWMEL--E 63 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC------------------------------CCHHHHHHH--H
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccc--------------------ccc------ceecccchh--h
Confidence 568999999999999999999985431110001000000 000 001111111 1
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+..|.+ +......+.. ....++||||||..+. ...+..+++.+|++|+|+++... .....
T Consensus 64 ~~~GiT--i~~~~~~~~~---~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~allVvDa~~g--~~~~t 123 (528)
T 3tr5_A 64 KQRGIS--VTTSVMQFPY---KDYLINLLDTPGHADF-------------TEDTYRTLTAVDSALMVIDAAKG--VEPRT 123 (528)
T ss_dssp HHHCCS--SSSSEEEEEE---TTEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEETTTC--SCHHH
T ss_pred hcCCee--EEEeEEEEEe---CCEEEEEEECCCchhH-------------HHHHHHHHHhCCEEEEEEeCCCC--CCHHH
Confidence 122322 2333333322 2356999999998664 33478899999999999987653 23444
Q ss_pred HHHHHHhCCCCCceEEEeecccCCCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
..+++.+...+.|+++|+||+|+...
T Consensus 124 ~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 124 IKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 55666666778999999999999643
No 161
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.00 E-value=3.5e-10 Score=118.43 Aligned_cols=80 Identities=20% Similarity=0.349 Sum_probs=42.8
Q ss_pred CcEEEeCCCCCccccC-CCCCchHHHHHHHHHHHhcCC-------------CeEEEEeecCCCccccHHHHHHHHHhCCC
Q 007263 137 NLTLIDLPGLTKVAVE-GQPDSIVQDIENMVRSYIEKP-------------NCIILAISPANQDLATSDAIKISREVDPT 202 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~-~q~~~~~~~i~~~~~~yi~~~-------------d~iil~v~~a~~d~~~~~~l~l~~~~~~~ 202 (610)
.++++||||+.+.... ..-..+...+.+....|+..+ ++++++++++...+... ...+.+.+. .
T Consensus 96 ~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~-d~~~~~~l~-~ 173 (361)
T 2qag_A 96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPL-DVAFMKAIH-N 173 (361)
T ss_dssp EEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHH-HHHHHHHTC-S
T ss_pred ceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchh-HHHHHHHhc-c
Confidence 5899999999654321 111234444555445666432 46777777654444333 335666665 5
Q ss_pred CCceEEEeecccCCCC
Q 007263 203 GERTFGVLTKIDLMDK 218 (610)
Q Consensus 203 ~~rti~VltK~D~~~~ 218 (610)
+.++|+|+||+|+...
T Consensus 174 ~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 174 KVNIVPVIAKADTLTL 189 (361)
T ss_dssp -SCEEEEEECCSSSCH
T ss_pred CCCEEEEEECCCCCCH
Confidence 7899999999999854
No 162
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.99 E-value=6.2e-10 Score=123.18 Aligned_cols=134 Identities=16% Similarity=0.243 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+++.|+++|..++|||||+++|++.. +..++... . +.+.+.... +
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~~--~-------------------------~~~~D~~~~--E 49 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYT------GAISEREK--R-------------------------EQLLDTLDV--E 49 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHH------TC----------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcc------CCcccccc--c-------------------------ccccccchh--h
Confidence 46799999999999999999998632 11111100 0 000000000 1
Q ss_pred hhcCCCCccccccEEEEEecCCC--CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNV--VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~--~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~ 190 (610)
+..| ..+....+.+....++. ..++||||||..+. ...+..+++.+|.+|||+++.+.. . .
T Consensus 50 rerG--ITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF-------------~~ev~r~l~~aD~aILVVDa~~gv-~-~ 112 (600)
T 2ywe_A 50 RERG--ITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF-------------SYEVSRALAACEGALLLIDASQGI-E-A 112 (600)
T ss_dssp --------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG-------------HHHHHHHHHTCSEEEEEEETTTBC-C-H
T ss_pred hccc--ceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH-------------HHHHHHHHHhCCEEEEEEECCCCc-c-H
Confidence 1112 22333344444333222 46889999998764 345677889999999999876532 1 2
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
.....+......+.++|+|+||+|+...
T Consensus 113 qt~~~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 113 QTVANFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCcccc
Confidence 2222222233357899999999999754
No 163
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.99 E-value=4.7e-10 Score=106.97 Aligned_cols=119 Identities=16% Similarity=0.187 Sum_probs=70.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
...+|+|+|+.|||||||+++|+|..+ +.......-..
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~----------------------------------------- 41 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVE----------------------------------------- 41 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCC-CC---CCCSCE-----------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCcccee-----------------------------------------
Confidence 357899999999999999999999865 21111100000
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-cc-H
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~-~ 190 (610)
+... .+.+.+ ....+.++||||.... +.+...|.+.++++++|++..+... .. .
T Consensus 42 --------~~~~--~i~~~g-~~~~~~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 97 (199)
T 2f9l_A 42 --------FATR--SIQVDG-KTIKAQIWDTAGQERY-------------RRITSAYYRGAVGALLVYDIAKHLTYENVE 97 (199)
T ss_dssp --------EEEE--EEEETT-EEEEEEEEECSSGGGT-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred --------EEEE--EEEECC-EEEEEEEEECCCchhh-------------hhhhHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 0000 111111 1124678999996543 2234567788999999887654221 11 1
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
..+..+......+.+++.|+||+|+.+
T Consensus 98 ~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 98 RWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHHhcCCCCeEEEEEECccccc
Confidence 112222333345689999999999864
No 164
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.96 E-value=1.1e-09 Score=114.04 Aligned_cols=142 Identities=15% Similarity=0.117 Sum_probs=69.8
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
..++.||||||+... . ....+.+|.+++++++...+. .+ . +...+ ...+.++|+||+|
T Consensus 166 ~~~~iliDT~Gi~~~-------------~---~~l~~~~d~vl~V~d~~~~~~-~~-~--i~~~i--l~~~~ivVlNK~D 223 (349)
T 2www_A 166 GYDIILIETVGVGQS-------------E---FAVADMVDMFVLLLPPAGGDE-LQ-G--IKRGI--IEMADLVAVTKSD 223 (349)
T ss_dssp TCSEEEEECCCC--C-------------H---HHHHTTCSEEEEEECCC------------------CCSCSEEEECCCS
T ss_pred CCCEEEEECCCcchh-------------h---hhHHhhCCEEEEEEcCCcchh-HH-H--hHHHH--HhcCCEEEEeeec
Confidence 457899999998531 1 123578999999988754321 11 1 11111 2357899999999
Q ss_pred CCCCCC---cHHHHHcC--ccccc----CCCeeEeeeCChhhhhccccHHHHHHHHHhHhccCCCCchhhhccChHHHHH
Q 007263 215 LMDKGT---DAADILEG--KSYRL----KFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAK 285 (610)
Q Consensus 215 ~~~~~~---~~~~~l~~--~~~~l----~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~ 285 (610)
+.+... ....+..+ ...+. ...++.++..+..+++.+...+.....+ ++.++ .+.....+--...+.+
T Consensus 224 l~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~--~~~~~-~~~~~R~~~~~~~~~~ 300 (349)
T 2www_A 224 GDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL--MLASG-ELTAKRRKQQKVWMWN 300 (349)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH--HHHHS-HHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH--HhhCc-hHHHHHHHHHHHHHHH
Confidence 874211 01111110 00111 1223445555566777777666555433 33322 2222211122334456
Q ss_pred HHHHHHHHHHHhhCHH
Q 007263 286 MLSKHLETVIKSRIPG 301 (610)
Q Consensus 286 ~L~~~L~~~i~~~LP~ 301 (610)
.+.+.+...+.+.+|.
T Consensus 301 ~~~~~~~~~~~~~~~~ 316 (349)
T 2www_A 301 LIQESVLEHFRTHPTV 316 (349)
T ss_dssp HHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHhCcch
Confidence 6666666666666663
No 165
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.96 E-value=6e-10 Score=123.51 Aligned_cols=134 Identities=19% Similarity=0.279 Sum_probs=70.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
++..|+|+|..++|||||+++|++.. +..++.. .. +.+.+.... +
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~--~~-------------------------~~~~D~~~~--E 47 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQIC------GGLSDRE--ME-------------------------AQVLDSMDL--E 47 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHT------TC----------------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc------CCccccc--cc-------------------------ccccccchh--h
Confidence 46789999999999999999998632 1111110 00 000000000 1
Q ss_pred hhcCCCCccccccEEEEEecCC--CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH
Q 007263 113 RETGRTKQISSVPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~--~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~ 190 (610)
+..| ..+....+.+.....+ ...++||||||..+. ...+..+++.+|.+|+|+++.+.. ..+
T Consensus 48 rerG--iTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF-------------~~ev~~~l~~aD~aILVVDa~~gv-~~q 111 (599)
T 3cb4_D 48 RERG--ITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF-------------SYEVSRSLAACEGALLVVDAGQGV-EAQ 111 (599)
T ss_dssp -----------CEEEEEEECTTSCEEEEEEEECCCCGGG-------------HHHHHHHHHHCSEEEEEEETTTCC-CTH
T ss_pred hccc--ceeeeeEEEEEEecCCCCeEEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEEECCCCC-CHH
Confidence 1112 2233333444333212 246899999998664 445778889999999999876532 222
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
....+......+.|.|+|+||+|+.+.
T Consensus 112 -t~~~~~~~~~~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 112 -TLANCYTAMEMDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp -HHHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred -HHHHHHHHHHCCCCEEEeeeccCcccc
Confidence 222222222347899999999999754
No 166
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.95 E-value=2.9e-09 Score=113.55 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=45.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC--ccccHHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--DLATSDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~--d~~~~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..++||||||..+ ........+..+|.+|||+++... ...+.+.+.+++.+. ..++++|+||+
T Consensus 83 ~~i~iiDtPGh~~-------------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~ 147 (410)
T 1kk1_A 83 RRVSFIDAPGHEA-------------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKI 147 (410)
T ss_dssp EEEEEEECSSHHH-------------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECG
T ss_pred cEEEEEECCChHH-------------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECc
Confidence 3589999999532 123455667789999999986642 122334454555443 25789999999
Q ss_pred cCCCC
Q 007263 214 DLMDK 218 (610)
Q Consensus 214 D~~~~ 218 (610)
|+.+.
T Consensus 148 Dl~~~ 152 (410)
T 1kk1_A 148 ELVDK 152 (410)
T ss_dssp GGSCH
T ss_pred cCCCH
Confidence 99854
No 167
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.94 E-value=2.1e-09 Score=112.32 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=58.3
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
..++.||||||+... ....+..+|.+|+++++...+.. + .+ ... -...+.++|+||+|
T Consensus 171 ~~~~iiiDTpGi~~~----------------~~~~~~~aD~vl~V~d~~~~~~~-~-~l--~~~--~~~~p~ivVlNK~D 228 (355)
T 3p32_A 171 GFDVILIETVGVGQS----------------EVAVANMVDTFVLLTLARTGDQL-Q-GI--KKG--VLELADIVVVNKAD 228 (355)
T ss_dssp TCCEEEEEECSCSSH----------------HHHHHTTCSEEEEEEESSTTCTT-T-TC--CTT--SGGGCSEEEEECCC
T ss_pred CCCEEEEeCCCCCcH----------------HHHHHHhCCEEEEEECCCCCccH-H-HH--HHh--HhhcCCEEEEECCC
Confidence 358999999997541 11235889999999987653321 1 10 010 12358899999999
Q ss_pred CCCCCC--cHHHHHcCcc---c----ccCCCeeEeeeCChhhhhccccHHHHHHH
Q 007263 215 LMDKGT--DAADILEGKS---Y----RLKFPWIGVVNRSQADINKNVDMIAARRR 260 (610)
Q Consensus 215 ~~~~~~--~~~~~l~~~~---~----~l~~g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (610)
+..... ...+.+.... . ..+.+++.++..+..+++.+...+.....
T Consensus 229 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 229 GEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 864321 0111111100 0 11234566666666777776666555443
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.93 E-value=2.8e-10 Score=123.33 Aligned_cols=114 Identities=20% Similarity=0.307 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
+.|.|+|+|..++|||||+++|.+..+.....+..|.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~------------------------------------------- 39 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQ------------------------------------------- 39 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCC-------------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeE-------------------------------------------
Confidence 5799999999999999999999875431111111110
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc-cccHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSD 191 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d-~~~~~ 191 (610)
.+.... +.. +...++||||||..+... +...++..+|.+|||+++.+.. ..+.+
T Consensus 40 -------~i~~~~----v~~-~~~~i~~iDTPGhe~f~~-------------~~~~~~~~aD~aILVVda~~g~~~qT~e 94 (501)
T 1zo1_I 40 -------HIGAYH----VET-ENGMITFLDTPGHAAFTS-------------MRARGAQATDIVVLVVAADDGVMPQTIE 94 (501)
T ss_dssp -------CSSCCC----CCT-TSSCCCEECCCTTTCCTT-------------SBCSSSBSCSSEEEEEETTTBSCTTTHH
T ss_pred -------eEEEEE----EEE-CCEEEEEEECCCcHHHHH-------------HHHHHHhhCCEEEEEeecccCccHHHHH
Confidence 000000 111 224689999999765422 2345678999999999765421 22334
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCC
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
.+..++ ..+.|+|+|+||+|+.+
T Consensus 95 ~l~~~~---~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 95 AIQHAK---AAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp HHHHHH---HTTCCEEEEEECSSSST
T ss_pred HHHHHH---hcCceEEEEEEeccccc
Confidence 444444 34688999999999975
No 169
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.93 E-value=6.1e-10 Score=123.52 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=46.1
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
+.++||||||..+... +...+++.+|.+|||+++.+. . .......++.+...+.|+++|+||+|+
T Consensus 70 ~~i~liDTPGhe~F~~-------------~~~r~~~~aD~aILVvDa~~G-v-~~qT~e~l~~l~~~~vPiIVViNKiDl 134 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTT-------------LRKRGGALADLAILIVDINEG-F-KPQTQEALNILRMYRTPFVVAANKIDR 134 (594)
T ss_dssp CEEEEECCCTTSCCTT-------------SBCSSSBSCSEEEEEEETTTC-C-CHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCEEEEECCCcHHHHH-------------HHHHHHhhCCEEEEEEECCCC-c-cHhHHHHHHHHHHcCCeEEEEeccccc
Confidence 3589999999866532 233577889999999987642 2 122333333333457899999999999
Q ss_pred CC
Q 007263 216 MD 217 (610)
Q Consensus 216 ~~ 217 (610)
..
T Consensus 135 ~~ 136 (594)
T 1g7s_A 135 IH 136 (594)
T ss_dssp ST
T ss_pred cc
Confidence 74
No 170
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.92 E-value=3.4e-09 Score=101.57 Aligned_cols=78 Identities=17% Similarity=0.272 Sum_probs=44.6
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHh---cCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI---EKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi---~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
++.++||||+..... +......++..+..|+ ...+.++++++..... ......+...+...+.+.++|.||+
T Consensus 73 ~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEV---PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL--KDLDQQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--CHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred CEEEEECcCCccccc---CHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC--chhHHHHHHHHHHcCCCeEEEEecc
Confidence 688999999864211 1112234455555565 4677888887755421 1111223333334568899999999
Q ss_pred cCCCCC
Q 007263 214 DLMDKG 219 (610)
Q Consensus 214 D~~~~~ 219 (610)
|+...+
T Consensus 148 D~~s~~ 153 (210)
T 1pui_A 148 DKLASG 153 (210)
T ss_dssp GGSCHH
T ss_pred cCCCch
Confidence 988644
No 171
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.92 E-value=3.3e-09 Score=113.93 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=46.5
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-ccHHHHHHHHHhCCCCC-ceEEEeec
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDAIKISREVDPTGE-RTFGVLTK 212 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~~~~l~l~~~~~~~~~-rti~VltK 212 (610)
...++||||||..+. ......++..+|.+|||+++.+... .+.+.+.++... +. ++|+|+||
T Consensus 103 ~~~~~iiDtpGh~~f-------------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~---~~~~iIvviNK 166 (434)
T 1zun_B 103 KRKFIIADTPGHEQY-------------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL---GIKHIVVAINK 166 (434)
T ss_dssp SEEEEEEECCCSGGG-------------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT---TCCEEEEEEEC
T ss_pred CceEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc---CCCeEEEEEEc
Confidence 346999999996543 3345678899999999998765322 122333444443 44 68999999
Q ss_pred ccCCCC
Q 007263 213 IDLMDK 218 (610)
Q Consensus 213 ~D~~~~ 218 (610)
+|+.+.
T Consensus 167 ~Dl~~~ 172 (434)
T 1zun_B 167 MDLNGF 172 (434)
T ss_dssp TTTTTS
T ss_pred CcCCcc
Confidence 999863
No 172
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.92 E-value=4.1e-09 Score=112.28 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC--ccccHHHHHHHHHhCCCCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--DLATSDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~--d~~~~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..++||||||..+ .......++..+|.+|||+++... ...+.+.+.+++.+. ..++++|+||+
T Consensus 81 ~~i~iiDtPGh~~-------------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK~ 145 (408)
T 1s0u_A 81 RRVSFVDSPGHET-------------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG--IDKIIIVQNKI 145 (408)
T ss_dssp EEEEEEECSSHHH-------------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECT
T ss_pred cEEEEEECCCHHH-------------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEcc
Confidence 3689999999532 123344556778999999986642 122334444444432 24799999999
Q ss_pred cCCCCC
Q 007263 214 DLMDKG 219 (610)
Q Consensus 214 D~~~~~ 219 (610)
|+.+..
T Consensus 146 Dl~~~~ 151 (408)
T 1s0u_A 146 DLVDEK 151 (408)
T ss_dssp TSSCTT
T ss_pred CCCCHH
Confidence 998653
No 173
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.91 E-value=3.6e-09 Score=115.97 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=52.4
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
...++||||||..+. ...+..++..+|++|+|+++.+.. ......+.+.+...+.|+++|+||+|
T Consensus 81 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvDa~~g~--~~~t~~~~~~~~~~~ipiivviNK~D 145 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDF-------------SEDTYRTLTAVDCCLMVIDAAKGV--EDRTRKLMEVTRLRDTPILTFMNKLD 145 (529)
T ss_dssp TEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEETTTCS--CHHHHHHHHHHTTTTCCEEEEEECTT
T ss_pred CeEEEEEECCCChhH-------------HHHHHHHHHHCCEEEEEEeCCccc--hHHHHHHHHHHHHcCCCEEEEEcCcC
Confidence 346999999998654 234678899999999999876532 33445566666667899999999999
Q ss_pred CCCC
Q 007263 215 LMDK 218 (610)
Q Consensus 215 ~~~~ 218 (610)
+...
T Consensus 146 l~~~ 149 (529)
T 2h5e_A 146 RDIR 149 (529)
T ss_dssp SCCS
T ss_pred Cccc
Confidence 9754
No 174
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.90 E-value=3.3e-09 Score=111.22 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=42.5
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc--cHHHHHHHHHhCCCCCce-EEEee-
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISREVDPTGERT-FGVLT- 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~--~~~~l~l~~~~~~~~~rt-i~Vlt- 211 (610)
..++||||||..+. ...+..+++.+|.+||+++ . .... +.+.+.+++. .+.+. |+|+|
T Consensus 60 ~~i~iiDtPGh~~f-------------~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~---~~i~~~ivvvNN 121 (370)
T 2elf_A 60 RNMVFVDAHSYPKT-------------LKSLITALNISDIAVLCIP-P-QGLDAHTGECIIALDL---LGFKHGIIALTR 121 (370)
T ss_dssp SEEEEEECTTTTTC-------------HHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHH---TTCCEEEEEECC
T ss_pred eEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHH---cCCCeEEEEEEe
Confidence 35899999998653 2334566799999999998 3 2332 2233334443 45676 99999
Q ss_pred cccC
Q 007263 212 KIDL 215 (610)
Q Consensus 212 K~D~ 215 (610)
|+|+
T Consensus 122 K~Dl 125 (370)
T 2elf_A 122 SDST 125 (370)
T ss_dssp GGGS
T ss_pred ccCC
Confidence 9999
No 175
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.88 E-value=8e-10 Score=119.45 Aligned_cols=144 Identities=22% Similarity=0.270 Sum_probs=79.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC-CCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKD-FLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~-~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
....|+++|..++|||||+|+|++.. .++... + .. +..-....+..-.+++.+.+....+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~-~-~~----------------~~~~~~~~g~~~~~~a~~~d~~~~e- 66 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRT-I-EK----------------FEKEAAELGKGSFKYAWVLDKLKAE- 66 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHH-H-HH----------------HHHHGGGGSSSCCCHHHHHHHHHHH-
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHH-H-HH----------------hhhhHHhcCCcchhhhhhhccchhH-
Confidence 34689999999999999999999741 111100 0 00 0000000000111333333333322
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc----
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL---- 187 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~---- 187 (610)
+..|.+..+... . +.. ....++||||||..+. ...+..++..+|++|||+++.+...
T Consensus 67 -r~~GiTi~~~~~--~--~~~-~~~~~~iiDtPGh~~f-------------~~~~~~~~~~aD~~ilVvda~~g~~~~sf 127 (458)
T 1f60_A 67 -RERGITIDIALW--K--FET-PKYQVTVIDAPGHRDF-------------IKNMITGTSQADCAILIIAGGVGEFEAGI 127 (458)
T ss_dssp -HHTTCCCSCSCE--E--EEC-SSEEEEEEECCCCTTH-------------HHHHHHSSSCCSEEEEEEECSHHHHHHHT
T ss_pred -HhcCcEEEEEEE--E--Eec-CCceEEEEECCCcHHH-------------HHHHHhhhhhCCEEEEEEeCCcCcccccc
Confidence 223544333322 1 222 2346999999996432 4456778999999999998654211
Q ss_pred ----ccHHHHHHHHHhCCCCCc-eEEEeecccCCC
Q 007263 188 ----ATSDAIKISREVDPTGER-TFGVLTKIDLMD 217 (610)
Q Consensus 188 ----~~~~~l~l~~~~~~~~~r-ti~VltK~D~~~ 217 (610)
.+.+.+.+++. .+.+ +|+|+||+|+.+
T Consensus 128 ~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 128 SKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp CTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred CcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 12233334433 3554 899999999984
No 176
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.86 E-value=2.3e-09 Score=101.62 Aligned_cols=118 Identities=17% Similarity=0.208 Sum_probs=69.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
..+|+|+|+.|||||||++.|+|..+ |.....+.-.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~------------------------------------------- 64 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGV------------------------------------------- 64 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSE-------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccce-------------------------------------------
Confidence 46899999999999999999999864 3221110000
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc-ccH-H
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATS-D 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~-~~~-~ 191 (610)
.+... .+.+.+ ....+.++||||..+.. .++..|.+.++.+++|++..+... .+- .
T Consensus 65 ------~~~~~--~i~~~g-~~~~~~i~Dt~g~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 122 (191)
T 1oix_A 65 ------EFATR--SIQVDG-KTIKAQIWDTAGLERYR-------------AITSAYYRGAVGALLVYDIAKHLTYENVER 122 (191)
T ss_dssp ------EEEEE--EEEETT-EEEEEEEEEECSCCSSS-------------CCCHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred ------EEEEE--EEEECC-EEEEEEEEECCCCcchh-------------hhhHHHhhcCCEEEEEEECcCHHHHHHHHH
Confidence 00000 111111 11245679999986542 235567788999988887554211 111 1
Q ss_pred HHHHHHHhCCCCCceEEEeecccCCC
Q 007263 192 AIKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 192 ~l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
.+..++.......+++.|+||+|+.+
T Consensus 123 ~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 123 WLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECccccc
Confidence 12222333445689999999999864
No 177
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.82 E-value=1.3e-08 Score=108.19 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=47.6
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCc-eEEEeecc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTKI 213 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~r-ti~VltK~ 213 (610)
...++||||||..+. ...+..++..+|.+|+++++.+... .....++..+...+.+ +++|+||+
T Consensus 74 ~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvda~~g~~--~qt~~~l~~~~~~~ip~iivviNK~ 138 (405)
T 2c78_A 74 KRHYSHVDCPGHADY-------------IKNMITGAAQMDGAILVVSAADGPM--PQTREHILLARQVGVPYIVVFMNKV 138 (405)
T ss_dssp SCEEEEEECCCSGGG-------------HHHHHHHHTTCSSEEEEEETTTCCC--HHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred CeEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEECCCCCc--HHHHHHHHHHHHcCCCEEEEEEECc
Confidence 457999999997653 3456778899999999998765322 2223333333334677 78999999
Q ss_pred cCCC
Q 007263 214 DLMD 217 (610)
Q Consensus 214 D~~~ 217 (610)
|+.+
T Consensus 139 Dl~~ 142 (405)
T 2c78_A 139 DMVD 142 (405)
T ss_dssp GGCC
T ss_pred cccC
Confidence 9985
No 178
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.80 E-value=4e-09 Score=119.57 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=49.9
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
...++||||||..+. ...+..+++.+|.+|+++++.+.. ......+++.+...+.++++|+||+|
T Consensus 74 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~llVvDa~~g~--~~~~~~~~~~~~~~~~p~ilviNK~D 138 (693)
T 2xex_A 74 GHRVNIIDTPGHVDF-------------TVEVERSLRVLDGAVTVLDAQSGV--EPQTETVWRQATTYGVPRIVFVNKMD 138 (693)
T ss_dssp TEEEEEECCCCCSSC-------------CHHHHHHHHHCSEEEEEEETTTBS--CHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeeEEEEECcCCcch-------------HHHHHHHHHHCCEEEEEECCCCCC--cHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 357999999999764 234677888999999999876532 22333344444445789999999999
Q ss_pred CCCC
Q 007263 215 LMDK 218 (610)
Q Consensus 215 ~~~~ 218 (610)
+...
T Consensus 139 l~~~ 142 (693)
T 2xex_A 139 KLGA 142 (693)
T ss_dssp STTC
T ss_pred cccc
Confidence 9754
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.80 E-value=2.6e-10 Score=126.80 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=35.9
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC--------ccccHHHHHHHHHhCCCCCc-e
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--------DLATSDAIKISREVDPTGER-T 206 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~--------d~~~~~~l~l~~~~~~~~~r-t 206 (610)
..++||||||..+.... +..++..+|++||||++... ...+.+.+.++.. .+.+ +
T Consensus 255 ~~i~iiDTPGh~~f~~~-------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~i 318 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISG-------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEI 318 (592)
T ss_dssp ----CCEEESSSEEEEE-------------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCE
T ss_pred eEEEEEECCChHHHHHH-------------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeE
Confidence 57899999998654221 34566789999999987642 2223344444444 3554 8
Q ss_pred EEEeecccCCC
Q 007263 207 FGVLTKIDLMD 217 (610)
Q Consensus 207 i~VltK~D~~~ 217 (610)
|+|+||+|+.+
T Consensus 319 IvviNKiDl~~ 329 (592)
T 3mca_A 319 VVSVNKLDLMS 329 (592)
T ss_dssp EEEEECGGGGT
T ss_pred EEEEecccccc
Confidence 99999999985
No 180
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.77 E-value=1.1e-08 Score=109.97 Aligned_cols=68 Identities=21% Similarity=0.360 Sum_probs=46.5
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc------cc--cHHHHHHHHHhCCCC-Cc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD------LA--TSDAIKISREVDPTG-ER 205 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d------~~--~~~~l~l~~~~~~~~-~r 205 (610)
...++||||||..+. ...+..++..+|++|||+++.+.. +. +.+.+.+++. .+ .+
T Consensus 83 ~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~---~~~~~ 146 (435)
T 1jny_A 83 KYFFTIIDAPGHRDF-------------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT---MGLDQ 146 (435)
T ss_dssp SCEEEECCCSSSTTH-------------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH---TTCTT
T ss_pred CeEEEEEECCCcHHH-------------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCe
Confidence 346999999997653 344677899999999999876521 11 1222233333 24 36
Q ss_pred eEEEeecccCCCC
Q 007263 206 TFGVLTKIDLMDK 218 (610)
Q Consensus 206 ti~VltK~D~~~~ 218 (610)
+|+|+||+|+.+.
T Consensus 147 iivviNK~Dl~~~ 159 (435)
T 1jny_A 147 LIVAVNKMDLTEP 159 (435)
T ss_dssp CEEEEECGGGSSS
T ss_pred EEEEEEcccCCCc
Confidence 8999999999863
No 181
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.74 E-value=3.8e-08 Score=104.47 Aligned_cols=81 Identities=19% Similarity=0.395 Sum_probs=41.6
Q ss_pred CCcEEEeCCCCCccccCC-CCCchHHHHHHHHHHHh-----------cCCC--eEEEEeecCCCccccHHHHHHHHHhCC
Q 007263 136 VNLTLIDLPGLTKVAVEG-QPDSIVQDIENMVRSYI-----------EKPN--CIILAISPANQDLATSDAIKISREVDP 201 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~-q~~~~~~~i~~~~~~yi-----------~~~d--~iil~v~~a~~d~~~~~~l~l~~~~~~ 201 (610)
+.++++||||+....... .-..+...+......|+ .+++ ++++++.|....+...+ ..+++.+..
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~~lk~L~~ 166 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE 166 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH-HHHHHHHTT
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH-HHHHHHHhc
Confidence 368999999997642110 01122233333333443 3444 56666666433333332 456677765
Q ss_pred CCCceEEEeecccCCCC
Q 007263 202 TGERTFGVLTKIDLMDK 218 (610)
Q Consensus 202 ~~~rti~VltK~D~~~~ 218 (610)
+.++|.|+||+|+..+
T Consensus 167 -~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 167 -KVNIIPLIAKADTLTP 182 (418)
T ss_dssp -TSEEEEEEESTTSSCH
T ss_pred -cCcEEEEEEcccCccH
Confidence 7999999999999753
No 182
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.73 E-value=4.9e-09 Score=104.28 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=42.7
Q ss_pred CCCeEEEEeecCCC---ccccH-HHHHHH-HHhCCCCCceEEEeecccCCCCCCcHHHHHcCcccc-cCCCeeEeeeCCh
Q 007263 172 KPNCIILAISPANQ---DLATS-DAIKIS-REVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYR-LKFPWIGVVNRSQ 245 (610)
Q Consensus 172 ~~d~iil~v~~a~~---d~~~~-~~l~l~-~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~-l~~g~~~v~~~s~ 245 (610)
++|++|+|++..+. .+... ..+..+ +.....+.|+++|.||+|+.+... . +........ .+..|+.+++.+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~-v-~~~~~~~~~~~~~~~~e~SAk~g 239 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY-I-RDAHTFALSKKNLQVVETSARSN 239 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH-H-HHHHHHHHTSSSCCEEECBTTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH-H-HHHHHHHHhcCCCeEEEEECCCC
Confidence 69999999987653 22211 111112 221234689999999999864321 1 111111111 2446677776666
Q ss_pred hhhhccccH
Q 007263 246 ADINKNVDM 254 (610)
Q Consensus 246 ~~~~~~~~~ 254 (610)
.++++....
T Consensus 240 ~gv~elf~~ 248 (255)
T 3c5h_A 240 VNVDLAFST 248 (255)
T ss_dssp BSHHHHHHH
T ss_pred CCHHHHHHH
Confidence 555554443
No 183
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.73 E-value=1.3e-08 Score=115.29 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=50.3
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
...++||||||..+. ...+..+++.+|.+|+++++.+.. .......++.+...+.+.++|+||+|
T Consensus 76 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~ilVvDa~~g~--~~~t~~~~~~~~~~~~p~ivviNKiD 140 (691)
T 1dar_A 76 DHRINIIDTPGHVDF-------------TIEVERSMRVLDGAIVVFDSSQGV--EPQSETVWRQAEKYKVPRIAFANKMD 140 (691)
T ss_dssp TEEEEEECCCSSTTC-------------HHHHHHHHHHCSEEEEEEETTTCS--CHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeEEEEEECcCccch-------------HHHHHHHHHHCCEEEEEEECCCCc--chhhHHHHHHHHHcCCCEEEEEECCC
Confidence 357999999998653 455788899999999999876532 22233333444445789999999999
Q ss_pred CCCC
Q 007263 215 LMDK 218 (610)
Q Consensus 215 ~~~~ 218 (610)
+...
T Consensus 141 ~~~~ 144 (691)
T 1dar_A 141 KTGA 144 (691)
T ss_dssp STTC
T ss_pred cccC
Confidence 9754
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.73 E-value=2.5e-08 Score=105.76 Aligned_cols=159 Identities=20% Similarity=0.272 Sum_probs=82.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
.+.|++||.+||||||||++|+|....-.+...+|..|..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~---------------------------------------- 196 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNL---------------------------------------- 196 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEE----------------------------------------
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceeccee----------------------------------------
Confidence 4579999999999999999999974211111122222210
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH--H
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--D 191 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~--~ 191 (610)
| . +..++...++++|+||+........ .+.. .....++.++.++++++.+ .+...+ .
T Consensus 197 --G----------~--V~~~~~~~~~l~DtpGli~~a~~~~--~L~~----~fl~~~era~~lL~vvDls-~~~~~~ls~ 255 (416)
T 1udx_A 197 --G----------V--VEVSEEERFTLADIPGIIEGASEGK--GLGL----EFLRHIARTRVLLYVLDAA-DEPLKTLET 255 (416)
T ss_dssp --E----------E--EECSSSCEEEEEECCCCCCCGGGSC--CSCH----HHHHHHTSSSEEEEEEETT-SCHHHHHHH
T ss_pred --e----------E--EEecCcceEEEEeccccccchhhhh--hhhH----HHHHHHHHHHhhhEEeCCc-cCCHHHHHH
Confidence 0 1 1111224689999999976432211 1111 1233467899999999865 221111 1
Q ss_pred HHHHHHHhCC--CCCceEEEeecccCCCCCCcHHHHHcCcccccCCCeeEeeeCChhhhhccccHH
Q 007263 192 AIKISREVDP--TGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 192 ~l~l~~~~~~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (610)
..+-...+.+ ...|.++|+||+|.... ...+.+.......+..++.+++.+..+++.+...+
T Consensus 256 g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 256 LRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 1111112221 24789999999998754 22222111111123345555555545554444433
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.72 E-value=5.7e-08 Score=110.20 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=50.3
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
..++||||||..+. ...+..+++.+|.+|+++++.... ......+++.+...+.+.++|+||+|+
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~~gv--~~qt~~~~~~~~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 82 HRINIIDTPGHVDF-------------TIEVERSMRVLDGAVMVYCAVGGV--QPQSETVWRQANKYKVPRIAFVNKMDR 146 (704)
T ss_pred eeEEEEeCCCccch-------------HHHHHHHHHHCCEEEEEEeCCCCC--cHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 57999999998653 345778889999999999876532 223334445555567899999999998
Q ss_pred CCC
Q 007263 216 MDK 218 (610)
Q Consensus 216 ~~~ 218 (610)
...
T Consensus 147 ~~~ 149 (704)
T 2rdo_7 147 MGA 149 (704)
T ss_pred ccc
Confidence 754
No 186
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.69 E-value=1.5e-08 Score=109.66 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=40.2
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc--------cccHHHHHHHHHhCCCCCc-e
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--------LATSDAIKISREVDPTGER-T 206 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d--------~~~~~~l~l~~~~~~~~~r-t 206 (610)
..++||||||..+. ......++..+|++|||+++.+.. ..+.+.+.++.. .+.+ +
T Consensus 121 ~~~~iiDtPGh~~f-------------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~---~~vp~i 184 (467)
T 1r5b_A 121 RRFSLLDAPGHKGY-------------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHL 184 (467)
T ss_dssp EEEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSE
T ss_pred eEEEEEECCCcHHH-------------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH---cCCCEE
Confidence 46899999997553 233566789999999999876532 123344444443 3565 8
Q ss_pred EEEeecccCCC
Q 007263 207 FGVLTKIDLMD 217 (610)
Q Consensus 207 i~VltK~D~~~ 217 (610)
|+|+||+|+..
T Consensus 185 ivviNK~Dl~~ 195 (467)
T 1r5b_A 185 VVVINKMDEPS 195 (467)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEECccCCC
Confidence 99999999964
No 187
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.69 E-value=1.8e-08 Score=116.47 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=48.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
..+.||||||..+. ...+..+++.+|.+|+|+++.+.. ......+++.+...+.+.++|+||+|+
T Consensus 98 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVvDa~~g~--~~qt~~~~~~~~~~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVVDTIEGV--CVQTETVLRQALGERIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSS-------------CHHHHHHHHTCSEEEEEEETTTBS--CHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred ceEEEEECcCchhh-------------HHHHHHHHHhCCEEEEEEeCCCCC--CHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 45899999998764 334778899999999999876532 222333444444457899999999998
Q ss_pred C
Q 007263 216 M 216 (610)
Q Consensus 216 ~ 216 (610)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 6
No 188
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.68 E-value=3.6e-09 Score=111.05 Aligned_cols=75 Identities=7% Similarity=0.031 Sum_probs=42.9
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHh--cCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
++.++||||+.......+ .+. .+....++ +..+.+++++++...-+. . .+.....+...+.++++|+||.|
T Consensus 213 ~~~liDtPG~~~~~~~~~--~l~---~~~l~~~~~~~~i~~~~~~l~~~~~~~~-g-~l~~l~~l~~~~~~~~~v~~k~d 285 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMAH--FVD---ARDLKIITPKREIHPRVYQLNEGQTLFF-G-GLARLDYIKGGRRSFVCYMANEL 285 (369)
T ss_dssp TCEEEECCSCCCCSSGGG--GSC---TTTHHHHSCSSCCCCEEEEECTTEEEEE-T-TTEEEEEEESSSEEEEEEECTTS
T ss_pred CeEEEeCCCcCcHHHHHH--HHh---HHHHHHHhcccccCceEEEEcCCceEEE-C-CEEEEEEccCCCceEEEEecCCc
Confidence 589999999976431110 011 11122222 678889998877422111 1 11112233445789999999999
Q ss_pred CCCC
Q 007263 215 LMDK 218 (610)
Q Consensus 215 ~~~~ 218 (610)
.+..
T Consensus 286 ~~~~ 289 (369)
T 3ec1_A 286 TVHR 289 (369)
T ss_dssp CEEE
T ss_pred cccc
Confidence 8754
No 189
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.68 E-value=7.9e-08 Score=99.76 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=37.2
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
..++.||||||+... .. .....+|.+++++++...+. ++..+. ...+.+.++|+||+|
T Consensus 148 ~~~i~liDTpG~~~~-------------~~---~~~~~aD~vl~Vvd~~~~~~-----~~~l~~-~~~~~p~ivv~NK~D 205 (341)
T 2p67_A 148 GYDVVIVETVGVGQS-------------ET---EVARMVDCFISLQIAGGGDD-----LQGIKK-GLMEVADLIVINKDD 205 (341)
T ss_dssp TCSEEEEEEECCTTH-------------HH---HHHTTCSEEEEEECC-----------CCCCH-HHHHHCSEEEECCCC
T ss_pred CCCEEEEeCCCccch-------------HH---HHHHhCCEEEEEEeCCccHH-----HHHHHH-hhhcccCEEEEECCC
Confidence 458999999998652 11 13589999999998754321 100000 001357899999999
Q ss_pred CCC
Q 007263 215 LMD 217 (610)
Q Consensus 215 ~~~ 217 (610)
+..
T Consensus 206 l~~ 208 (341)
T 2p67_A 206 GDN 208 (341)
T ss_dssp TTC
T ss_pred CCC
Confidence 874
No 190
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.68 E-value=1.8e-08 Score=106.92 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=46.3
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-cHHHHHHHHHhCCCCCc-eEEEeec
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TSDAIKISREVDPTGER-TFGVLTK 212 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~~~~l~l~~~~~~~~~r-ti~VltK 212 (610)
...++||||||..+. ......++..+|.+||++++.+.... +.+.+.+++ ..+.+ .++|+||
T Consensus 65 ~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~---~~~vp~iivviNK 128 (397)
T 1d2e_A 65 ARHYAHTDCPGHADY-------------VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLAR---QIGVEHVVVYVNK 128 (397)
T ss_dssp SCEEEEEECSSHHHH-------------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHH---HTTCCCEEEEEEC
T ss_pred CeEEEEEECCChHHH-------------HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHH---HcCCCeEEEEEEC
Confidence 357999999996442 33466788999999999987653221 223333343 34677 6899999
Q ss_pred ccCCC
Q 007263 213 IDLMD 217 (610)
Q Consensus 213 ~D~~~ 217 (610)
+|+.+
T Consensus 129 ~Dl~~ 133 (397)
T 1d2e_A 129 ADAVQ 133 (397)
T ss_dssp GGGCS
T ss_pred cccCC
Confidence 99985
No 191
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.67 E-value=2.4e-08 Score=101.79 Aligned_cols=177 Identities=19% Similarity=0.244 Sum_probs=76.1
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
-.|+|+|+.|+|||||++.|+|...+|.+. +.- .... +
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~-~g~~-----------------------------~----------- 56 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERV-ISG-AAEK-----------------------------I----------- 56 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC----------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCC-ccc-CCcc-----------------------------c-----------
Confidence 368999999999999999999975555432 110 0000 0
Q ss_pred cCCCCccccccEEEEEecCC-CCCcEEEeCCCCCccccC-CCCCchHHHHHHHHHHHhcC-------------CCeEEEE
Q 007263 115 TGRTKQISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVE-GQPDSIVQDIENMVRSYIEK-------------PNCIILA 179 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~-~~~ltlvDtPGi~~~~~~-~q~~~~~~~i~~~~~~yi~~-------------~d~iil~ 179 (610)
..+..+ ..+.+.+..++ ...++++||||+...... ..-..+...+.+....|+.. +++++++
T Consensus 57 -~~t~~~--~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~l 133 (301)
T 2qnr_A 57 -ERTVQI--EASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYF 133 (301)
T ss_dssp -----------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEE
T ss_pred -CCcceE--eeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeee
Confidence 000000 01111121112 346999999998543211 01122333344433455432 3446666
Q ss_pred eecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCc--HHHHHcCcccccCCCeeEeeeCChhhhhccccHHHH
Q 007263 180 ISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTD--AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (610)
Q Consensus 180 v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (610)
..|....+...+ ..+++.+.+ ..++++|+||.|+.....- ..+.+.......+..|+.++..+. ++++....+..
T Consensus 134 dePt~~~Ld~~~-~~~l~~l~~-~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~ 210 (301)
T 2qnr_A 134 ISPFGHGLKPLD-VAFMKAIHN-KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTR 210 (301)
T ss_dssp ECSSSSSCCHHH-HHHHHHHTT-TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHH
T ss_pred ecCcccCCCHHH-HHHHHHHHh-cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHH
Confidence 666443233322 456666654 5689999999999754210 111111112223456666666655 66665554444
Q ss_pred HH
Q 007263 258 RR 259 (610)
Q Consensus 258 ~~ 259 (610)
..
T Consensus 211 ~i 212 (301)
T 2qnr_A 211 LL 212 (301)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 192
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.67 E-value=4.4e-08 Score=103.60 Aligned_cols=82 Identities=15% Similarity=0.277 Sum_probs=47.2
Q ss_pred CCcEEEeCCCCCccccCC-CCCch----HHHHHHHHHHHhc---------C--CCeEEEEeecCCCccccHHHHHHHHHh
Q 007263 136 VNLTLIDLPGLTKVAVEG-QPDSI----VQDIENMVRSYIE---------K--PNCIILAISPANQDLATSDAIKISREV 199 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~-q~~~~----~~~i~~~~~~yi~---------~--~d~iil~v~~a~~d~~~~~~l~l~~~~ 199 (610)
++++++|+||+....... ....+ ..++......+.. + .|++++++.++..++... ...+++.+
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~-Dieilk~L 173 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSL-DLVTMKKL 173 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHH-HHHHHHHT
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHH-HHHHHHHH
Confidence 369999999997532110 00112 2233333334321 1 234666666766555433 46788888
Q ss_pred CCCCCceEEEeecccCCCCC
Q 007263 200 DPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 200 ~~~~~rti~VltK~D~~~~~ 219 (610)
. .+.++|.|+||+|.+.+.
T Consensus 174 ~-~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 174 D-SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp C-SCSEEEEEESCGGGSCHH
T ss_pred h-hCCCEEEEEcchhccchH
Confidence 7 689999999999998653
No 193
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.63 E-value=1.5e-07 Score=96.02 Aligned_cols=71 Identities=15% Similarity=0.298 Sum_probs=47.7
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH-HHH-HHH---HHhCCCCCceEEEe
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-DAI-KIS---REVDPTGERTFGVL 210 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~-~~l-~l~---~~~~~~~~rti~Vl 210 (610)
..+.||||||..+.... .+ +...|.++++++|+|++..+. +... ..+ .+. +...| +.++++|.
T Consensus 46 v~LqIWDTAGQErf~~~----~l------~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~-~ipillvg 113 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEP----SY------DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNP-SINIEVLI 113 (331)
T ss_dssp SCEEEEECCSCSSSCCC----SH------HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCT-TCEEEEEC
T ss_pred EEEEEEECCCchhccch----hh------hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCC-CCcEEEEE
Confidence 57999999998765210 00 357899999999999987654 2211 111 122 22334 68999999
Q ss_pred ecccCCCC
Q 007263 211 TKIDLMDK 218 (610)
Q Consensus 211 tK~D~~~~ 218 (610)
||+|+.++
T Consensus 114 NK~DL~~~ 121 (331)
T 3r7w_B 114 HKVDGLSE 121 (331)
T ss_dssp CCCCSSCS
T ss_pred ECcccCch
Confidence 99999754
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.61 E-value=1.8e-08 Score=104.55 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=25.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccccccccccc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p 71 (610)
.+|++||.+|+|||||+|+|+|..+.......||.-|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 4799999999999999999999763222222345555
No 195
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.60 E-value=2e-07 Score=96.42 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
.-..++++|.+|||||||+|+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999975
No 196
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.60 E-value=2e-08 Score=105.25 Aligned_cols=76 Identities=8% Similarity=0.056 Sum_probs=43.2
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHH--hcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSY--IEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~y--i~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
++.++||||+...... .+.+. .+....+ .+..+.+++++++...-+. . .+.....+...+.++++|+||.|
T Consensus 212 ~~~liDtPG~~~~~~~--~~~l~---~~~l~~~~~~~~i~~~~~~l~~~~~~~~-g-~l~~~d~l~~~~~~~~~v~nk~d 284 (368)
T 3h2y_A 212 ESSLYDTPGIINHHQM--AHYVG---KQSLKLITPTKEIKPMVFQLNEEQTLFF-S-GLARFDYVSGGRRAFTCHFSNRL 284 (368)
T ss_dssp SCEEEECCCBCCTTSG--GGGSC---HHHHHHHSCSSCCCCEEEEECTTEEEEE-T-TTEEEEEEESSSEEEEEEECTTS
T ss_pred CeEEEeCCCcCcHHHH--HHHhh---HHHHHHhccccccCceEEEEcCCCEEEE-c-ceEEEEEecCCCceEEEEecCcc
Confidence 4899999999764311 01111 2222333 3567888888876422111 1 11112233445689999999999
Q ss_pred CCCCC
Q 007263 215 LMDKG 219 (610)
Q Consensus 215 ~~~~~ 219 (610)
.+...
T Consensus 285 ~~~~~ 289 (368)
T 3h2y_A 285 TIHRT 289 (368)
T ss_dssp CEEEE
T ss_pred ccccc
Confidence 98543
No 197
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.59 E-value=3.8e-08 Score=114.35 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=47.1
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc-cHHHHHHHHHhCCCCCc-eEEEeec
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TSDAIKISREVDPTGER-TFGVLTK 212 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~~~~l~l~~~~~~~~~r-ti~VltK 212 (610)
...++||||||..+. ......++..+|.+|||+++.+.... +.+.+.+++. .+.+ +|+|+||
T Consensus 358 ~~kI~IIDTPGHedF-------------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~---lgIP~IIVVINK 421 (1289)
T 3avx_A 358 TRHYAHVDCPGHADY-------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ---VGVPYIIVFLNK 421 (1289)
T ss_dssp SCEEEEEECCCHHHH-------------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH---HTCSCEEEEEEC
T ss_pred CEEEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH---cCCCeEEEEEee
Confidence 457999999996542 34466788999999999987653222 2234444443 3667 7899999
Q ss_pred ccCCC
Q 007263 213 IDLMD 217 (610)
Q Consensus 213 ~D~~~ 217 (610)
+|+.+
T Consensus 422 iDLv~ 426 (1289)
T 3avx_A 422 CDMVD 426 (1289)
T ss_dssp CTTCC
T ss_pred ccccc
Confidence 99985
No 198
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.59 E-value=3e-08 Score=109.14 Aligned_cols=135 Identities=15% Similarity=0.257 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccC--CCcccCChHHHHHHHHHH
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHI--PRKRFTDFAAVRKEIQDE 110 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~i~~~ 110 (610)
+...|+|||...+|||||.++|+-.. |...+.- .+.+. ....+.|+.+. +
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~t------G~i~~~G----------------~V~~~~~~~~~~~D~~~~------E 81 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFG------GAIQMAG----------------SVKARKAARHATSDWMAM------E 81 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHT------TCHHHHH----------------HHHHC--------------------
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhc------Ccccccc----------------eeecCccccccccCChHH------H
Confidence 34579999999999999999997321 1111100 00000 00011122111 1
Q ss_pred hhhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccH
Q 007263 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (610)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~ 190 (610)
.+| | ..+....+.+.. +...++||||||..+.... +.+.++-+|..|+||++.. .. ..
T Consensus 82 reR--G--ITI~s~~~~~~~---~~~~iNlIDTPGHvDF~~E-------------v~raL~~~DgAvlVvda~~-GV-~~ 139 (548)
T 3vqt_A 82 RER--G--ISVTTSVMQFPY---RDRVVNLLDTPGHQDFSED-------------TYRVLTAVDSALVVIDAAK-GV-EA 139 (548)
T ss_dssp ----------CTTTEEEEEE---TTEEEEEECCCCGGGCSHH-------------HHHHHHSCSEEEEEEETTT-BS-CH
T ss_pred HHC--C--CcEeeceEEEEE---CCEEEEEEeCCCcHHHHHH-------------HHHHHHhcCceEEEeecCC-Cc-cc
Confidence 111 2 334455555533 3356999999999887433 7788899999999998764 22 34
Q ss_pred HHHHHHHHhCCCCCceEEEeecccCCC
Q 007263 191 DAIKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 191 ~~l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
....+.+.+...+.|.|+++||+|...
T Consensus 140 qT~~v~~~a~~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 140 QTRKLMDVCRMRATPVMTFVNKMDREA 166 (548)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTSCC
T ss_pred ccHHHHHHHHHhCCceEEEEecccchh
Confidence 445566777777899999999999864
No 199
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.55 E-value=6.3e-08 Score=109.25 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
....|+++|..++|||||+++|+|........|.+ . .+..+.|+... +
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V--~----------------------~g~~~~d~~~~--------e 55 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV--E----------------------EGTTTTDYTPE--------A 55 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG--G----------------------GTCCSSCCSHH--------H
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee--c----------------------CCcccccCCHH--------H
Confidence 45789999999999999999999753210011111 0 01111121111 0
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
+..| ..+......+ .. ....+.|+||||..+. ...+..+++.+|.+++++++... . ....
T Consensus 56 ~~~g--iti~~~~~~~--~~-~~~~~nliDTpG~~~f-------------~~~~~~~l~~ad~~ilVvD~~~g-~-~~qt 115 (665)
T 2dy1_A 56 KLHR--TTVRTGVAPL--LF-RGHRVFLLDAPGYGDF-------------VGEIRGALEAADAALVAVSAEAG-V-QVGT 115 (665)
T ss_dssp HHTT--SCCSCEEEEE--EE-TTEEEEEEECCCSGGG-------------HHHHHHHHHHCSEEEEEEETTTC-S-CHHH
T ss_pred HhcC--CeEEecceEE--ee-CCEEEEEEeCCCccch-------------HHHHHHHHhhcCcEEEEEcCCcc-c-chhH
Confidence 1112 1222222222 22 2346899999998653 45578889999999999986542 2 2223
Q ss_pred HHHHHHhCCCCCceEEEeecccCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLM 216 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~ 216 (610)
..+++.+...+.+.++|+||+|+.
T Consensus 116 ~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 116 ERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHHccCCEEEEecCCchh
Confidence 344444444578999999999987
No 200
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.50 E-value=2.7e-07 Score=92.35 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=49.0
Q ss_pred CCcEEEeCCCCCccccCCCC-CchHHHHHHHHHHHh--------------cCCCeEEEEeecCCCccccHHHHHHHHHhC
Q 007263 136 VNLTLIDLPGLTKVAVEGQP-DSIVQDIENMVRSYI--------------EKPNCIILAISPANQDLATSDAIKISREVD 200 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~-~~~~~~i~~~~~~yi--------------~~~d~iil~v~~a~~d~~~~~~l~l~~~~~ 200 (610)
+.++++|+||+......... +.+...+..-...+. ..+++.++++++....+... ...+++.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~l-D~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPL-DLEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHH-HHHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHH-HHHHHHHHH
Confidence 46899999999764332221 122333332222221 23577888888765544433 356777776
Q ss_pred CCCCceEEEeecccCCCCC
Q 007263 201 PTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 201 ~~~~rti~VltK~D~~~~~ 219 (610)
.. .++|.|+||+|.+.+.
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp TT-SEEEEEETTGGGSCHH
T ss_pred hc-CcEEEEEeccccCCHH
Confidence 66 8999999999998643
No 201
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.49 E-value=1.1e-07 Score=99.54 Aligned_cols=108 Identities=20% Similarity=0.196 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
.-.+|++||.+|+|||||+|+|+|..+-......||.-|..-... . ++.. +..+ .
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~-v-------------~~~r---~~~l--------~ 75 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVP-V-------------PDER---FDFL--------C 75 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEE-C-------------CCHH---HHHH--------H
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEE-E-------------CCcc---ceee--------c
Confidence 446899999999999999999999875222222355544222110 0 0000 0000 0
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCC
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN 184 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~ 184 (610)
...... .. ....++|+||||+...... ...+.+....+++.+|+|++|++..+
T Consensus 76 ~~~~p~--------~~-----~~~~i~lvDtpGl~~~as~------~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 76 QYHKPA--------SK-----IPAFLNVVDIAGLVKGAHN------GQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHCCS--------EE-----ECCEEEEEECCC-----------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccCcc--------cc-----cccccEEEECCCcccccch------hhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 000000 00 0125899999999874332 11222346788999999999998653
No 202
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.43 E-value=2.3e-07 Score=105.57 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=81.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
++..|+|||...+|||||.++|+-.. |...+.. .+. .+..+.|+.+. +.+
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~------g~i~~~g-~v~-----------------~~~~~~D~~~~------E~e 61 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYT------GVNHKLG-EVH-----------------DGAATTDWMVQ------EQE 61 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHH------HHHHHC------------------------------------------
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhc------CCCCcCc-eec-----------------CCCccCCChHH------HHH
Confidence 45689999999999999999998321 2111111 000 01112222211 111
Q ss_pred hhcCCCCccccccEEEEEecCC----CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccc
Q 007263 113 RETGRTKQISSVPIHLSIYSPN----VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA 188 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~----~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~ 188 (610)
++..+....+.+...+.. ...++||||||..+.. .-+...++-+|..|+||++.. ..
T Consensus 62 ----RGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~-------------~Ev~~aLr~~DgavlvVDave-GV- 122 (709)
T 4fn5_A 62 ----RGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFT-------------IEVERSLRVLDGAVVVFCGTS-GV- 122 (709)
T ss_dssp ----------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCH-------------HHHHHHHHHCSEEEEEEETTT-CS-
T ss_pred ----cCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccH-------------HHHHHHHHHhCeEEEEEECCC-CC-
Confidence 223344566666554432 2348999999998863 336778888999999998664 22
Q ss_pred cHHHHHHHHHhCCCCCceEEEeecccCCC
Q 007263 189 TSDAIKISREVDPTGERTFGVLTKIDLMD 217 (610)
Q Consensus 189 ~~~~l~l~~~~~~~~~rti~VltK~D~~~ 217 (610)
......+++.+...+.|.|+|+||+|...
T Consensus 123 ~~qT~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 123 EPQSETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CHHHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred chhHHHHHHHHHHcCCCeEEEEccccccC
Confidence 34455566777777899999999999853
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.42 E-value=6.5e-07 Score=88.82 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~ 55 (610)
..+.++++|..|+||||++++|.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHH
Confidence 56789999999999999999998
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.42 E-value=4.2e-07 Score=98.47 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=47.5
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCc-eEEEeecc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTKI 213 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~r-ti~VltK~ 213 (610)
..++.||||||..... ..+...+.... .++ .+|.+++|+++... . ++...++.+... .+ +++|+||+
T Consensus 183 ~~DvvIIDTpG~~~~~-----~~l~~el~~~~-~~i-~pd~vllVvDa~~g-~---~~~~~a~~~~~~-~~i~gvVlNK~ 250 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQE-----DSLFEEMLQVA-NAI-QPDNIVYVMDASIG-Q---ACEAQAKAFKDK-VDVASVIVTKL 250 (504)
T ss_dssp TCCEEEEEECCCCTTC-----HHHHHHHHHHH-HHH-CCSEEEEEEETTCC-T---THHHHHHHHHHH-HCCCCEEEECT
T ss_pred CCcEEEEeCCCCcccc-----hhHHHHHHHHH-hhh-cCceEEEEEecccc-c---cHHHHHHHHHhh-cCceEEEEeCC
Confidence 3579999999987521 11223333322 233 79999999887542 1 244445544432 45 58999999
Q ss_pred cCCCCCCcHHHH
Q 007263 214 DLMDKGTDAADI 225 (610)
Q Consensus 214 D~~~~~~~~~~~ 225 (610)
|....+..+.++
T Consensus 251 D~~~~~g~~l~~ 262 (504)
T 2j37_W 251 DGHAKGGGALSA 262 (504)
T ss_dssp TSCCCCTHHHHH
T ss_pred ccccchHHHHHH
Confidence 998665444443
No 205
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.42 E-value=3.8e-07 Score=95.12 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=61.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (610)
.+|++||.+|+|||||+|+|+|..........+|..|+.-.. .. +. ..+.. .....
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~-~v-------------~~------~~l~~----~~~~~ 57 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV-PL-------------ED------ERLYA----LQRTF 57 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE-EC-------------CC------HHHHH----HHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE-ec-------------Ch------HHHHH----HHHHh
Confidence 479999999999999999999865212222345666633221 10 00 11110 01111
Q ss_pred cCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCC
Q 007263 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN 184 (610)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~ 184 (610)
+.... +.......+.|+||||+......+ +.+ .+....+++.+|+|++|++...
T Consensus 58 -~~~~~---------~~~~~~~~i~lvDtpGl~~~a~~~--~~l----g~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 58 -AKGER---------VPPVVPTHVEFVDIAGLVKGAHKG--EGL----GNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp -CBTTB---------CCCEECCEEEEEECCSCCCCCCSS--SCT----THHHHHHHHTCSEEEEEEECCC
T ss_pred -ccccc---------ccccCCceEEEEECCCcccccccc--chH----HHHHHHHHHhCCEEEEEEECCC
Confidence 10000 000012358999999998754332 112 2334567899999999998654
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.38 E-value=1e-07 Score=107.00 Aligned_cols=133 Identities=21% Similarity=0.226 Sum_probs=80.2
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (610)
+-.|+|+|...+|||||.++|+-.. |...+.- .. ..+..+.|+.... +
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~------G~i~~~g------~v------------~~g~~~~D~~~~E--------r 49 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNS------GAITELG------SV------------DKGTTRTDNTLLE--------R 49 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHH------TCCSSCS------SC------------CCSCCSTTCSTTH--------H
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHc------CCCcccc------cc------------ccCCcccCCcHHH--------H
Confidence 4568999999999999999997321 1111110 00 0011222222211 1
Q ss_pred hcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHH
Q 007263 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (610)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l 193 (610)
..|.+ +....+.+. .....++||||||..+. ..-+.+.++-+|..|+||++.. ... ....
T Consensus 50 eRGIT--I~s~~~~~~---~~~~~iNlIDTPGH~DF-------------~~Ev~raL~~~DgavlVVDa~~-GV~-~qT~ 109 (638)
T 3j25_A 50 QRGIT--IQTGITSFQ---WENTKVNIIDTPGHMDF-------------LAEVYRSLSVLDGAILLISAKD-GVQ-AQTR 109 (638)
T ss_dssp HHSSC--SSCCCCCCB---CSSCBCCCEECCCSSST-------------HHHHHHHHTTCSEEECCEESSC-TTC-SHHH
T ss_pred hCCCc--EEeeeEEEE---ECCEEEEEEECCCcHHH-------------HHHHHHHHHHhCEEEEEEeCCC-CCc-HHHH
Confidence 12322 223333221 23456899999998876 3337778899999999998654 332 2334
Q ss_pred HHHHHhCCCCCceEEEeecccCCCC
Q 007263 194 KISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
.+++.+...+.|.|+++||+|....
T Consensus 110 ~v~~~a~~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 110 ILFHALRKMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHHHTCSCEECCEECCSSSC
T ss_pred HHHHHHHHcCCCeEEEEeccccccC
Confidence 4556666668899999999998643
No 207
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.35 E-value=1.6e-06 Score=92.16 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=52.2
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
.++.||||||..... ......+..+ ..+..+|.++||+++.. .+++...++.+++....+.+|+||+|.
T Consensus 183 ~DvVIIDTaGrl~~d-----~~lm~el~~i--~~~~~pd~vlLVvDA~~----gq~a~~~a~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKED-----KALIEEMKQI--SNVIHPHEVILVIDGTI----GQQAYNQALAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH--HHHHCCSEEEEEEEGGG----GGGHHHHHHHHHHSCTTEEEEEECCSS
T ss_pred CCEEEEECCCcccch-----HHHHHHHHHH--HHhhcCceEEEEEeCCC----chhHHHHHHHHHhhCCCeEEEEECCCC
Confidence 589999999975421 1223333332 22346898989888654 245566667776666778899999998
Q ss_pred CCCCCcHHHHHc
Q 007263 216 MDKGTDAADILE 227 (610)
Q Consensus 216 ~~~~~~~~~~l~ 227 (610)
...+..+..+..
T Consensus 252 ~~~gG~~ls~~~ 263 (443)
T 3dm5_A 252 SAKGGGALSAVA 263 (443)
T ss_dssp CSSHHHHHHHHH
T ss_pred cccccHHHHHHH
Confidence 766544455433
No 208
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.25 E-value=4.7e-06 Score=88.09 Aligned_cols=121 Identities=24% Similarity=0.270 Sum_probs=70.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (610)
..+.++++|..|||||||+|+|+|.. -|....+....+ .+ .
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~-~p~~GsI~~~g~-~~-------------------------------------t 108 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG-NEEEGAAKTGVV-EV-------------------------------------T 108 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC-TTSTTSCCCCC------------------------------------------
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC-CccCceEEECCe-ec-------------------------------------c
Confidence 45789999999999999999999974 232222211111 00 0
Q ss_pred hhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHH
Q 007263 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (610)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~ 192 (610)
...+ + ...+..++++++|+||+.... ....+.++.+ -+...+..++ ++... .....
T Consensus 109 ----------~~~~-v-~q~~~~~~ltv~D~~g~~~~~-----~~~~~~L~~~---~L~~~~~~~~-lS~G~---~~kqr 164 (413)
T 1tq4_A 109 ----------MERH-P-YKHPNIPNVVFWDLPGIGSTN-----FPPDTYLEKM---KFYEYDFFII-ISATR---FKKND 164 (413)
T ss_dssp ----------CCCE-E-EECSSCTTEEEEECCCGGGSS-----CCHHHHHHHT---TGGGCSEEEE-EESSC---CCHHH
T ss_pred ----------eeEE-e-ccccccCCeeehHhhcccchH-----HHHHHHHHHc---CCCccCCeEE-eCCCC---ccHHH
Confidence 0001 1 112345689999999986421 1122222211 1444455544 44321 23445
Q ss_pred HHHHHHhCCCCCceEEEeecccCC
Q 007263 193 IKISREVDPTGERTFGVLTKIDLM 216 (610)
Q Consensus 193 l~l~~~~~~~~~rti~VltK~D~~ 216 (610)
+.+++.+...+.|+++|+||+|.+
T Consensus 165 v~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 165 IDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp HHHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHHHhcCCCeEEEEecCccc
Confidence 567777777789999999999975
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.19 E-value=2.3e-06 Score=89.77 Aligned_cols=107 Identities=22% Similarity=0.269 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCC-CcccccccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDF-LPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~-lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (610)
.-..|++||.+|||||||+|+|+|..+ -......||..|+.-...- ++.. +..+.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v--------------~~~r---~~~l~------- 74 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAV--------------PDER---FDWLC------- 74 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEE--------------CCHH---HHHHH-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeee--------------CCcc---hhhhh-------
Confidence 446899999999999999999999765 2222234555553222100 0000 00000
Q ss_pred hhhcCCCCccccccEEEEEecCCCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecC
Q 007263 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (610)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a 183 (610)
....+. . . + ...+.++|+||+......+ +.+ .+....+++.+|+|+++++..
T Consensus 75 ~~~~~~------~--~--v----~~~i~lvD~pGl~~~~s~~--e~L----~~~fl~~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 75 EAYKPK------S--R--V----PAFLTVFDIAGLTKGASTG--VGL----GNAFLSHVRAVDAIYQVVRAF 126 (392)
T ss_dssp HHHCCS------E--E--E----CEEEEEECTGGGCCCCCSS--SSS----CHHHHHHHTTCSEEEEEEECC
T ss_pred hhcccc------c--c--c----CcceEEEeccccccCCcHH--HHH----HHHHHHHHHHHHHHHHHHhcc
Confidence 000000 0 0 0 1147899999998654432 112 233567788999999998764
No 210
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.15 E-value=3.5e-06 Score=92.81 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
..+.|+|||.+|+|||||+|+|+|...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 467899999999999999999999864
No 211
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.10 E-value=2.4e-06 Score=85.97 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
.-.+|++||.+|+|||||+|+|+|...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce
Confidence 345899999999999999999999865
No 212
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.08 E-value=6.7e-07 Score=86.23 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|.|+++|..|+|||||+++|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999975
No 213
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.08 E-value=8e-06 Score=86.68 Aligned_cols=83 Identities=18% Similarity=0.317 Sum_probs=50.5
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
.+++.||||||....+. .......+..+ ...+ .++.++||+++... +++...++.+.+....+.+|+||+|
T Consensus 179 ~~DvvIIDTaGr~~~~~---d~~lm~el~~i-~~~~-~pd~vlLVlDa~~g----q~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGE---ETKLLEEMKEM-YDVL-KPDDVILVIDASIG----QKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp TCSEEEEEECCCSSSCC---TTHHHHHHHHH-HHHH-CCSEEEEEEEGGGG----GGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred CCCEEEEECCCCccccC---CHHHHHHHHHH-HHhh-CCcceEEEEeCccc----hHHHHHHHHHhcccCCcEEEEeccc
Confidence 46899999999754111 12233334332 2223 57888898887642 3445555655544467889999999
Q ss_pred CCCCCCcHHHHH
Q 007263 215 LMDKGTDAADIL 226 (610)
Q Consensus 215 ~~~~~~~~~~~l 226 (610)
....+..+..+.
T Consensus 250 ~~a~~G~als~~ 261 (433)
T 3kl4_A 250 GTAKGGGALSAV 261 (433)
T ss_dssp GCSCHHHHHHHH
T ss_pred ccccchHHHHHH
Confidence 876554444443
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.97 E-value=1.4e-05 Score=85.26 Aligned_cols=79 Identities=25% Similarity=0.215 Sum_probs=47.2
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHH-HHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCC-CceEEEeec
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR-SYIEKPNCIILAISPANQDLATSDAIKISREVDPTG-ERTFGVLTK 212 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~-~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~-~rti~VltK 212 (610)
..++.||||||.... ....+..+.. ..+..+|.+++++++... +++...++.+.+.- ..+.+|+||
T Consensus 180 ~~D~vIIDT~G~~~~--------~~~l~~~l~~i~~~~~~d~vllVvda~~g----~~~~~~~~~~~~~~~~i~gvVlnK 247 (432)
T 2v3c_C 180 KADVLIIDTAGRHKE--------EKGLLEEMKQIKEITNPDEIILVIDGTIG----QQAGIQAKAFKEAVGEIGSIIVTK 247 (432)
T ss_dssp SCSEEEEECCCSCSS--------HHHHHHHHHHTTSSSCCSEEEEEEEGGGG----GGHHHHHHHHHTTSCSCEEEEEEC
T ss_pred CCCEEEEcCCCCccc--------cHHHHHHHHHHHHHhcCcceeEEeecccc----HHHHHHHHHHhhcccCCeEEEEeC
Confidence 458999999998652 1122222211 123368999998876432 24555566555432 238999999
Q ss_pred ccCCCCCCcHHHH
Q 007263 213 IDLMDKGTDAADI 225 (610)
Q Consensus 213 ~D~~~~~~~~~~~ 225 (610)
+|....+..+..+
T Consensus 248 ~D~~~~~g~~l~~ 260 (432)
T 2v3c_C 248 LDGSAKGGGALSA 260 (432)
T ss_dssp SSSCSTTHHHHHH
T ss_pred CCCccchHHHHHH
Confidence 9987554334443
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.83 E-value=9.4e-06 Score=80.71 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~ 59 (610)
.+|++||.+|+|||||+|+|+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6899999999999999999999865
No 216
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.79 E-value=3.9e-05 Score=77.91 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=51.4
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCC
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLM 216 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~ 216 (610)
+..++||+|....... ....+..+-..+.+..+..|+.++|++++... ++.+..++.+......+++++||.|..
T Consensus 186 d~~llDt~G~~~~~~~-~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~----~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHN-LMEELKKVKRAIAKADPEEPKEVWLVLDAVTG----QNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp SEEEECCCCCCTTCHH-HHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC----THHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred CEEEecCCCCCCchHH-HHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH----HHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 5678999998543211 11223322333444556789988888886542 344445554433334689999999987
Q ss_pred CCCCcHHHHHc
Q 007263 217 DKGTDAADILE 227 (610)
Q Consensus 217 ~~~~~~~~~l~ 227 (610)
..+..+..+..
T Consensus 261 a~gg~~l~i~~ 271 (304)
T 1rj9_A 261 AKGGVLIPIVR 271 (304)
T ss_dssp CCCTTHHHHHH
T ss_pred ccccHHHHHHH
Confidence 66665655543
No 217
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.79 E-value=1.4e-05 Score=77.14 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~ 58 (610)
..+.|+|+|..|+|||||+++|++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999999764
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.70 E-value=0.00016 Score=73.18 Aligned_cols=82 Identities=17% Similarity=0.300 Sum_probs=47.8
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCc-eEEEeecc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTKI 213 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~r-ti~VltK~ 213 (610)
..++.||||||...... .+.....+..+ ..+..+|.+++++++.. .++++..++.+.+. .+ +.+|+||+
T Consensus 180 ~~D~ViIDTpg~~~~~~---~~~l~~el~~i--~~~~~~d~vllVvda~~----g~~~~~~~~~~~~~-~~i~gvVlnk~ 249 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGE---EAALLEEMKNI--YEAIKPDEVTLVIDASI----GQKAYDLASKFNQA-SKIGTIIITKM 249 (297)
T ss_dssp TCSEEEEECCCSCCTTC---HHHHHHHHHHH--HHHHCCSEEEEEEEGGG----GGGHHHHHHHHHHT-CTTEEEEEECG
T ss_pred CCCEEEEeCCCCccccc---HHHHHHHHHHH--HHHhcCCEEEEEeeCCc----hHHHHHHHHHHHhh-CCCCEEEEeCC
Confidence 35799999999865100 00111122221 22346888989887653 24556666666543 45 77899999
Q ss_pred cCCCCCCcHHHHH
Q 007263 214 DLMDKGTDAADIL 226 (610)
Q Consensus 214 D~~~~~~~~~~~l 226 (610)
|....+..+..+.
T Consensus 250 D~~~~~g~~~~~~ 262 (297)
T 1j8m_F 250 DGTAKGGGALSAV 262 (297)
T ss_dssp GGCTTHHHHHHHH
T ss_pred CCCcchHHHHHHH
Confidence 9875543344443
No 219
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.69 E-value=6.7e-05 Score=79.84 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
....|+|+|.+++|||+|||.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4567999999999999999999974
No 220
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.67 E-value=0.00018 Score=73.72 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=50.9
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 215 (610)
.++.++||+|..... ......+..+.+.. .+|-.++++++.. .++++..++.+.....-+++|+||.|.
T Consensus 212 ~d~vliDtaG~~~~~-----~~l~~eL~~i~ral--~~de~llvLDa~t----~~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 212 IDVVLIDTAGRSETN-----RNLMDEMKKIARVT--KPNLVIFVGDALA----GNAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp CSEEEEEECCSCCTT-----TCHHHHHHHHHHHH--CCSEEEEEEEGGG----TTHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred chhhHHhhccchhHH-----HHHHHHHHHHHHHh--cCCCCEEEEecHH----HHHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 356789999986532 22444444433222 4777888888654 256677777666545678999999998
Q ss_pred CCCCCcHHHHH
Q 007263 216 MDKGTDAADIL 226 (610)
Q Consensus 216 ~~~~~~~~~~l 226 (610)
...+..+..++
T Consensus 281 ~a~~G~~l~~~ 291 (328)
T 3e70_C 281 DARGGAALSIS 291 (328)
T ss_dssp CSCCHHHHHHH
T ss_pred ccchhHHHHHH
Confidence 65554444443
No 221
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.66 E-value=8.3e-05 Score=79.70 Aligned_cols=83 Identities=17% Similarity=0.300 Sum_probs=50.6
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHH---HHHH-hcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEee
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENM---VRSY-IEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLT 211 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~---~~~y-i~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~Vlt 211 (610)
.++.||||+|...... .....+..+ ++.. ...++.++|++++.. .++++..++.+...-.-+.+|+|
T Consensus 376 ~DvVLIDTaGrl~~~~-----~lm~EL~kiv~iar~l~~~~P~evLLvLDatt----Gq~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKS-----HLMEELKKIVRVMKKLDVEAPHEVMLTIDAST----GQNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp CSEEEECCCCSCCCHH-----HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG----THHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEeCCCccchhh-----hHHHHHHHHHHHHHHhccCCCCeeEEEecCcc----cHHHHHHHHHHHhhcCCCEEEEE
Confidence 3688999999864311 122222222 2222 124778888887653 34566666666544456789999
Q ss_pred cccCCCCCCcHHHHHc
Q 007263 212 KIDLMDKGTDAADILE 227 (610)
Q Consensus 212 K~D~~~~~~~~~~~l~ 227 (610)
|.|....+..+..++.
T Consensus 447 KLD~takgG~~lsi~~ 462 (503)
T 2yhs_A 447 KLDGTAKGGVIFSVAD 462 (503)
T ss_dssp CGGGCSCCTHHHHHHH
T ss_pred cCCCcccccHHHHHHH
Confidence 9998766666666654
No 222
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.63 E-value=6.2e-05 Score=80.15 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=46.0
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHH-HHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMV-RSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~-~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
.++.||||||..... ...+..+. ..++..++.+++|+++... +++...++.+++.-.-+-+|+||+|
T Consensus 184 ~D~VIIDTpG~l~~~--------~~l~~~L~~~~~~~~p~~vllVvda~~g----~~~~~~~~~f~~~l~i~gvVlnK~D 251 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVD--------EAMMDEIKQVHASINPVETLFVVDAMTG----QDAANTAKAFNEALPLTGVVLTKVD 251 (433)
T ss_dssp CSEEEEECCCCCTTC--------HHHHHHHHHHHHHSCCSEEEEEEETTBC----TTHHHHHHHHHHHSCCCCEEEECTT
T ss_pred CCEEEEECCCccccc--------HHHHHHHHHHHHhhcCcceeEEeecchh----HHHHHHHHHHhccCCCeEEEEecCC
Confidence 589999999975421 11222221 1335578999998876531 3455555555432222457999999
Q ss_pred CCCCCCcHHHH
Q 007263 215 LMDKGTDAADI 225 (610)
Q Consensus 215 ~~~~~~~~~~~ 225 (610)
....+..+..+
T Consensus 252 ~~~~~g~~l~i 262 (433)
T 2xxa_A 252 GDARGGAALSI 262 (433)
T ss_dssp SSSCCTHHHHH
T ss_pred CCccHHHHHHH
Confidence 87655434443
No 223
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.54 E-value=4.1e-05 Score=77.74 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=48.0
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHh-----cCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEE
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI-----EKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGV 209 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi-----~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~V 209 (610)
.+++.|+||||.... ...+...+..+ ...+ ..++.++|++++.. .++++..++.+.....-+-+|
T Consensus 186 ~~dvvIiDtpg~~~~-----~~~l~~eL~~l-~~~i~~~i~~~p~~vllVlda~t----~~~~l~~a~~~~~~~~i~gvV 255 (306)
T 1vma_A 186 NKDVVIIDTAGRLHT-----KKNLMEELRKV-HRVVKKKIPDAPHETLLVIDATT----GQNGLVQAKIFKEAVNVTGII 255 (306)
T ss_dssp TCSEEEEEECCCCSC-----HHHHHHHHHHH-HHHGGGTCTTCCSEEEEEEEGGG----HHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEECCCchhh-----HHHHHHHHHHH-HHHHhhccCCCCcEEEEEEECCC----CHHHHHHHHHHHhcCCCCEEE
Confidence 467999999996321 11122233332 2222 24788888887642 244555555444333456678
Q ss_pred eecccCCCCCCcHHHHHc
Q 007263 210 LTKIDLMDKGTDAADILE 227 (610)
Q Consensus 210 ltK~D~~~~~~~~~~~l~ 227 (610)
+||.|....+..+.++..
T Consensus 256 lTk~D~~~~gG~~l~~~~ 273 (306)
T 1vma_A 256 LTKLDGTAKGGITLAIAR 273 (306)
T ss_dssp EECGGGCSCTTHHHHHHH
T ss_pred EeCCCCccchHHHHHHHH
Confidence 999998777665655543
No 224
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.38 E-value=0.0011 Score=67.62 Aligned_cols=83 Identities=24% Similarity=0.347 Sum_probs=48.5
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHh-----cCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEE
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI-----EKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGV 209 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi-----~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~V 209 (610)
..++.||||||...... .....+..+ ...+ ..+|.+++++++.. .++++.-++.+.+...-+=+|
T Consensus 191 ~yD~VIIDTpg~l~~~~-----~l~~eL~~~-~~vi~~~~p~~~d~vllVl~a~~----~~~~l~~~~~~~~~~~i~GvV 260 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKT-----NLMAELEKM-NKIIQQVEKSAPHEVLLVIDATT----GQNGVIQAEEFSKVADVSGII 260 (320)
T ss_dssp TCSEEEEECCCCGGGHH-----HHHHHHHHH-HHHHHTTCTTCCSEEEEEEEGGG----THHHHHHHHHHTTTSCCCEEE
T ss_pred CCCEEEEcCCCcccccH-----HHHHHHHHH-HHHHhcccCCCCceEEEEEECCC----cHHHHHHHHHHhhcCCCcEEE
Confidence 35899999999865311 011112111 1122 24788888887652 255666666666543444578
Q ss_pred eecccCCCCCCcHHHHHc
Q 007263 210 LTKIDLMDKGTDAADILE 227 (610)
Q Consensus 210 ltK~D~~~~~~~~~~~l~ 227 (610)
+||.|....+..+..+..
T Consensus 261 ltk~d~~~~~g~~~~~~~ 278 (320)
T 1zu4_A 261 LTKMDSTSKGGIGLAIKE 278 (320)
T ss_dssp EECGGGCSCTTHHHHHHH
T ss_pred EeCCCCCCchhHHHHHHH
Confidence 999998766555555543
No 225
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.23 E-value=0.00064 Score=71.94 Aligned_cols=80 Identities=21% Similarity=0.357 Sum_probs=47.0
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
..++.||||||..... ......+..+ . .+-.++.++||+++.. .+++...++.+.+.-..+-+|+||+|
T Consensus 180 ~~DvVIIDTaG~l~~d-----~~l~~el~~i-~-~~~~pd~vlLVvDa~t----gq~av~~a~~f~~~l~i~GVIlTKlD 248 (425)
T 2ffh_A 180 ARDLILVDTAGRLQID-----EPLMGELARL-K-EVLGPDEVLLVLDAMT----GQEALSVARAFDEKVGVTGLVLTKLD 248 (425)
T ss_dssp TCSEEEEECCCCSSCC-----HHHHHHHHHH-H-HHHCCSEEEEEEEGGG----TTHHHHHHHHHHHHTCCCEEEEESGG
T ss_pred CCCEEEEcCCCccccc-----HHHHHHHHHh-h-hccCCceEEEEEeccc----hHHHHHHHHHHHhcCCceEEEEeCcC
Confidence 3579999999975431 1112222111 1 1236888889887643 25666666665543334677999999
Q ss_pred CCCCCCcHHHH
Q 007263 215 LMDKGTDAADI 225 (610)
Q Consensus 215 ~~~~~~~~~~~ 225 (610)
....+..+..+
T Consensus 249 ~~~~~g~alsi 259 (425)
T 2ffh_A 249 GDARGGAALSA 259 (425)
T ss_dssp GCSSCHHHHHH
T ss_pred CcccHHHHHHH
Confidence 86554434443
No 226
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.14 E-value=0.00089 Score=69.32 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=48.3
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCC
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLM 216 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~ 216 (610)
+..++||.|+...... .+.++..+...+.+..+..|+-++|+++|.. . .+....++.+......+++++||.|..
T Consensus 242 d~~lldt~Gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLDptt-g---lD~~~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLDGNT-G---LNMLPQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCCHH-HHHHHHHHHHHHHHHSTTCCSEEEEEEEGGG-G---GGGHHHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHHhcCCCceEEEEcCCC-C---CCHHHHHHHHHHhcCCeEEEEecCccc
Confidence 3568999998653211 1122332333334455678888888888543 2 222223333332235689999999987
Q ss_pred CCCCcHHHHH
Q 007263 217 DKGTDAADIL 226 (610)
Q Consensus 217 ~~~~~~~~~l 226 (610)
..+..+..+.
T Consensus 317 ~~gG~~lsi~ 326 (359)
T 2og2_A 317 ARGGCVVSVV 326 (359)
T ss_dssp SCTHHHHHHH
T ss_pred ccccHHHHHH
Confidence 6665555554
No 227
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.14 E-value=0.00044 Score=69.79 Aligned_cols=80 Identities=19% Similarity=0.158 Sum_probs=44.3
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhc--CCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeec
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTK 212 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK 212 (610)
.+++.|+||||..... ...+..+. ..+. .++.+++++++.. + ..+..++++.+... ...-+|+||
T Consensus 182 ~~dlvIiDT~G~~~~~--------~~~~~el~-~~l~~~~~~~~~lVl~at~-~--~~~~~~~~~~~~~l-~~~giVltk 248 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKD--------PQYIDELK-ETIPFESSIQSFLVLSATA-K--YEDMKHIVKRFSSV-PVNQYIFTK 248 (296)
T ss_dssp GSSEEEEECCCCCTTS--------HHHHHHHH-HHSCCCTTEEEEEEEETTB-C--HHHHHHHTTTTSSS-CCCEEEEEC
T ss_pred CCCEEEEeCCCCChhh--------HHHHHHHH-HHHhhcCCCeEEEEEECCC-C--HHHHHHHHHHHhcC-CCCEEEEeC
Confidence 3589999999986531 12222322 2333 3566666664432 2 23344455544432 345567899
Q ss_pred ccCCCCCCcHHHHHc
Q 007263 213 IDLMDKGTDAADILE 227 (610)
Q Consensus 213 ~D~~~~~~~~~~~l~ 227 (610)
.|....+..+..++.
T Consensus 249 ~D~~~~~g~~~~~~~ 263 (296)
T 2px0_A 249 IDETTSLGSVFNILA 263 (296)
T ss_dssp TTTCSCCHHHHHHHH
T ss_pred CCcccchhHHHHHHH
Confidence 998766555555554
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.03 E-value=0.00093 Score=67.63 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=46.3
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCC
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLM 216 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~ 216 (610)
+..++||.|+...... .+.++..+...+.+..+..|+-++|+++|.. .. +....++.+......+++++||.|..
T Consensus 185 d~~lldt~gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLDpts-gl---D~~~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLDGNT-GL---NMLPQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCCHH-HHHHHHHHHHHHHTTSTTCCSEEEEEEEGGG-GG---GGHHHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcchhH-HHHHHHHHHHHHHHhhccCCCeeEEEEeCCC-Cc---CHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 3568999998653211 1111222222233334567887788888543 22 22222333332234689999999987
Q ss_pred CCCCcHHHHH
Q 007263 217 DKGTDAADIL 226 (610)
Q Consensus 217 ~~~~~~~~~l 226 (610)
..+.....+.
T Consensus 260 ~~~g~~l~~~ 269 (302)
T 3b9q_A 260 ARGGCVVSVV 269 (302)
T ss_dssp SCTHHHHHHH
T ss_pred CccChheehH
Confidence 6655555554
No 229
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.80 E-value=0.0024 Score=64.35 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=46.1
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeeccc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
.+++.|+||||..... ......+..+.. .-.++.+++++++.. .+++...++...+.-..+-+|+||+|
T Consensus 180 ~~D~viiDtpp~~~~d-----~~~~~~l~~~~~--~~~~~~~~lv~~~~~----~~~~~~~~~~~~~~~~i~givlnk~d 248 (295)
T 1ls1_A 180 ARDLILVDTAGRLQID-----EPLMGELARLKE--VLGPDEVLLVLDAMT----GQEALSVARAFDEKVGVTGLVLTKLD 248 (295)
T ss_dssp TCCEEEEECCCCSSCC-----HHHHHHHHHHHH--HHCCSEEEEEEEGGG----THHHHHHHHHHHHHTCCCEEEEECGG
T ss_pred CCCEEEEeCCCCcccc-----HHHHHHHHHHhh--hcCCCEEEEEEeCCC----cHHHHHHHHHHhhcCCCCEEEEECCC
Confidence 3589999999875431 112222222221 125888888887542 25555555555443233557899999
Q ss_pred CCCCCCcHHHHH
Q 007263 215 LMDKGTDAADIL 226 (610)
Q Consensus 215 ~~~~~~~~~~~l 226 (610)
....+..+.++.
T Consensus 249 ~~~~~g~~~~~~ 260 (295)
T 1ls1_A 249 GDARGGAALSAR 260 (295)
T ss_dssp GCSSCHHHHHHH
T ss_pred CCccHHHHHHHH
Confidence 876554455544
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.37 E-value=0.0013 Score=66.66 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~ 58 (610)
..++++|.+|+|||||+|+|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 479999999999999999999974
No 231
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.23 E-value=0.0013 Score=66.46 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=58.4
Q ss_pred CcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCC
Q 007263 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLM 216 (610)
Q Consensus 137 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~ 216 (610)
.+.++|| ..+. +.+...|++++|++|+|++..+.+........+...+...+.+.++|+||+|+.
T Consensus 64 ~~~iwD~--qer~-------------~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRK-------------NLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCS-------------CEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--cccc-------------ceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899998 2221 334557999999999999877654222222233333333578999999999997
Q ss_pred CCCC--cHHHHHcCcccccCCCeeEeeeCChhhhhccc
Q 007263 217 DKGT--DAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (610)
Q Consensus 217 ~~~~--~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (610)
++.. +..+...... .. ..|+.+++.+..+++++.
T Consensus 129 ~~~~v~~~~~~~~~~~-~~-~~~~~~SAktg~gv~~lf 164 (301)
T 1u0l_A 129 DEDDLRKVRELEEIYS-GL-YPIVKTSAKTGMGIEELK 164 (301)
T ss_dssp CHHHHHHHHHHHHHHT-TT-SCEEECCTTTCTTHHHHH
T ss_pred CchhHHHHHHHHHHHh-hh-CcEEEEECCCCcCHHHHH
Confidence 5421 1122221100 11 567777776666555433
No 232
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=95.99 E-value=0.0028 Score=65.51 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=49.4
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcc---------ccHHHHHHHHHhCC----
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL---------ATSDAIKISREVDP---- 201 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~---------~~~~~l~l~~~~~~---- 201 (610)
...+.++||+|-.+. +.++..|.+++++||+|++.++.|. .-.++..+...+-.
T Consensus 192 ~~~l~iwDt~GQe~~-------------r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQRSE-------------RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCchhh-------------hHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 456899999997553 5567789999999999998776431 12334444443322
Q ss_pred CCCceEEEeecccCC
Q 007263 202 TGERTFGVLTKIDLM 216 (610)
Q Consensus 202 ~~~rti~VltK~D~~ 216 (610)
.+.++|+|+||.|+.
T Consensus 259 ~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 259 TDTSIILFLNKKDLF 273 (353)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred cCCcEEEEEECcCch
Confidence 468999999999985
No 233
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.80 E-value=0.0088 Score=61.98 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=44.7
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc--------c-ccHHHHHHHHHhC----C
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--------L-ATSDAIKISREVD----P 201 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d--------~-~~~~~l~l~~~~~----~ 201 (610)
...+.++||||-.+. +.++..|.++++++|+|++.++.| . .-.++..+...+- .
T Consensus 200 ~~~l~i~Dt~Gq~~~-------------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSE-------------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccchhhh-------------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 357899999997543 556778999999999999877632 1 1123333433332 2
Q ss_pred CCCceEEEeecccCC
Q 007263 202 TGERTFGVLTKIDLM 216 (610)
Q Consensus 202 ~~~rti~VltK~D~~ 216 (610)
.+.++|+|+||.|+.
T Consensus 267 ~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 267 SNVSIILFLNKTDLL 281 (362)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCCEEEEEEChhhh
Confidence 468999999999985
No 234
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.59 E-value=0.014 Score=58.96 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|..|+|||||+|+|. .
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-S
T ss_pred EEEEECCCCCCHHHHHHHHH-H
Confidence 68999999999999999999 5
No 235
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.43 E-value=0.01 Score=62.73 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~ 55 (610)
+--|+|+|.+++|||+|+|.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 4467899999999999999776
No 236
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.14 E-value=0.0053 Score=62.04 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=37.7
Q ss_pred HHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 165 MVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 165 ~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
+.+.|++++|.+++|++..+.++.....-+++..+...+.+.++|+||+|+.++
T Consensus 72 l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 72 LIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp EETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred HhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc
Confidence 344689999999999987655433332223333343467999999999999854
No 237
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.02 E-value=0.038 Score=51.64 Aligned_cols=66 Identities=12% Similarity=0.214 Sum_probs=40.5
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCC--CCCceEEEeecc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP--TGERTFGVLTKI 213 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~--~~~rti~VltK~ 213 (610)
.++.|||+||... ..+...+..+|.+|+++.+...+......++.++.+.. .+.+..+|+|++
T Consensus 76 yD~viiD~~~~~~---------------~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 76 YDFAIVDGAGSLS---------------VITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp SSEEEEECCSSSS---------------HHHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCEEEEECCCCCC---------------HHHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 5899999998653 12445566799998888765433111223333433321 135668999999
Q ss_pred cCC
Q 007263 214 DLM 216 (610)
Q Consensus 214 D~~ 216 (610)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 954
No 238
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.96 E-value=0.0093 Score=56.14 Aligned_cols=23 Identities=13% Similarity=0.512 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|+++|+.|||||||+++|++.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999975
No 239
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.75 E-value=0.042 Score=54.75 Aligned_cols=52 Identities=12% Similarity=0.065 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 163 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 163 ~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
.+.+..+++.+|+|+.|+++......... .+.+.+ .+.+.++|+||+|+.+.
T Consensus 14 ~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l--~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 14 RREVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL--KNKPRIMLLNKADKADA 65 (282)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC--SSSCEEEEEECGGGSCH
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHHHH--CCCCEEEEEECcccCCH
Confidence 56688899999999999987653332222 233333 46899999999999863
No 240
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.67 E-value=0.012 Score=54.93 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=26.0
Q ss_pred EEEEcCCCCCHHHHHhhhhCCC--CCccccccccccc
Q 007263 37 IAVVGGQSSGKSSVLESIVGKD--FLPRGSGIVTRRP 71 (610)
Q Consensus 37 IvVvG~~ssGKSSllnal~G~~--~lP~~~~~~Tr~p 71 (610)
|||+|+.|||||||++.|+... -|......+||-|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999998531 1233445666666
No 241
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.55 E-value=0.017 Score=55.97 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999999973
No 242
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.52 E-value=0.033 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~ 58 (610)
..++++|..|||||||||+|.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 368999999999999999999975
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.44 E-value=0.015 Score=53.70 Aligned_cols=23 Identities=13% Similarity=0.501 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|+++|+.|||||||++.|.|.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999985
No 244
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.40 E-value=0.015 Score=54.61 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..++|+|+.|||||||++.|+|.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999984
No 245
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.38 E-value=0.022 Score=56.32 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|+|.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6889999999999999999997
No 246
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.37 E-value=0.025 Score=58.28 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|..|+|||||+|+|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 69999999999999999999974
No 247
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.32 E-value=0.017 Score=53.32 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 248
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.32 E-value=0.024 Score=55.13 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.27 E-value=0.022 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
.-|+++|+.|||||||++.|.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45899999999999999999986
No 250
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.26 E-value=0.021 Score=56.09 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|+|..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 251
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.25 E-value=0.02 Score=55.08 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999973
No 252
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.20 E-value=0.021 Score=58.41 Aligned_cols=29 Identities=34% Similarity=0.645 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 66 (610)
.++|+|+.|||||||+++|+|. +|...|.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~--~~~~~g~ 201 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF--IPKEERI 201 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG--SCTTSCE
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCCcE
Confidence 6899999999999999999996 3434443
No 253
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.15 E-value=0.023 Score=58.84 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=24.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 66 (610)
..++|+|+.|||||||+++|+|. +|...|.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~--~~~~~g~ 205 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE--IPFDQRL 205 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT--SCTTSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--CCCCceE
Confidence 36999999999999999999996 3444443
No 254
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.13 E-value=0.024 Score=54.11 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|+|.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999997
No 255
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.13 E-value=0.019 Score=54.28 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|.|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999996
No 256
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.08 E-value=0.024 Score=56.34 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|+|.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999997
No 257
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.08 E-value=0.024 Score=55.87 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|.|.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999997
No 258
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.06 E-value=0.024 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+++|.+||||||+++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5889999999999999999996
No 259
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=94.03 E-value=0.053 Score=55.42 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=49.3
Q ss_pred CCCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc---------cccHHHHHHHHHh----C
Q 007263 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD---------LATSDAIKISREV----D 200 (610)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d---------~~~~~~l~l~~~~----~ 200 (610)
....+.++||+|-.+. +.++..|.++++++|+|++.+..| -.-.++..+...+ .
T Consensus 159 ~~v~l~iwDtaGQe~~-------------R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSE-------------RKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp SSCEEEEEECCSCHHH-------------HHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred eeeeeccccCCCcccc-------------cccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 3467999999996442 778899999999999999876211 1112333333332 2
Q ss_pred CCCCceEEEeecccCCC
Q 007263 201 PTGERTFGVLTKIDLMD 217 (610)
Q Consensus 201 ~~~~rti~VltK~D~~~ 217 (610)
..+.++++|+||+|+..
T Consensus 226 ~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GTTSEEEEEEECHHHHH
T ss_pred cCCCeEEEEEECchhhh
Confidence 24689999999999863
No 260
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.98 E-value=0.026 Score=54.41 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|+|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 261
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.93 E-value=0.021 Score=53.43 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+++|+.|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999986
No 262
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.93 E-value=0.024 Score=61.46 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=25.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T 68 (610)
.|+|+|+.||||||++++|+|. +|.+.+++|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 3999999999999999999985 455555443
No 263
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.88 E-value=0.022 Score=54.54 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
.-++|+|+.|||||||++.|+|.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999996
No 264
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.85 E-value=0.028 Score=55.39 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 58899999999999999999973
No 265
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.81 E-value=0.021 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|+|+|.+|||||||++.|.|.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999986
No 266
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.81 E-value=0.029 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 267
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.80 E-value=0.028 Score=55.02 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 268
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=93.76 E-value=0.044 Score=57.33 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=48.4
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCc--------c-ccHHHHHHHHHhC----CC
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--------L-ATSDAIKISREVD----PT 202 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d--------~-~~~~~l~l~~~~~----~~ 202 (610)
..+.++||+|-.+. +.++..|.++++++|+|++.++.| . .-.++..+...+. ..
T Consensus 217 v~l~iwDtaGQe~~-------------r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 217 VNFHMFDVGGQRDE-------------RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp EEEEEEEECCSGGG-------------GGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred ccceecccchhhhh-------------hhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 57899999997653 556788999999999999877622 1 1123344444332 24
Q ss_pred CCceEEEeecccCC
Q 007263 203 GERTFGVLTKIDLM 216 (610)
Q Consensus 203 ~~rti~VltK~D~~ 216 (610)
+.++|+|+||+|+.
T Consensus 284 ~~piiLvgNK~DL~ 297 (402)
T 1azs_C 284 TISVILFLNKQDLL 297 (402)
T ss_dssp SCCEEEEEECHHHH
T ss_pred CCeEEEEEEChhhh
Confidence 68999999999985
No 269
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.75 E-value=0.03 Score=55.45 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|+|..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 270
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.73 E-value=0.025 Score=52.46 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
-++++|+.|||||||++.|+|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999985
No 271
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.72 E-value=0.031 Score=54.92 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|+|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 272
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.67 E-value=0.03 Score=51.51 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|.++++|..|||||||+++|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4789999999999999999999975
No 273
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.65 E-value=0.026 Score=53.91 Aligned_cols=22 Identities=14% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++|+|+.|||||||++.|.|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999995
No 274
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.65 E-value=0.033 Score=55.06 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999973
No 275
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.63 E-value=0.032 Score=54.67 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T 68 (610)
.++++|+.|||||||++.|.|.. |-.+|.++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~ 63 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH--RPIQGKIE 63 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS--CCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEEE
Confidence 58899999999999999999973 43445443
No 276
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.57 E-value=0.036 Score=53.76 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999997
No 277
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.53 E-value=0.035 Score=53.97 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~ 58 (610)
-.++++|+.|||||||++.|.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999999999999999973
No 278
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.49 E-value=0.035 Score=55.23 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|+|..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999973
No 279
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.41 E-value=0.026 Score=53.18 Aligned_cols=24 Identities=21% Similarity=0.635 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
-.-|+++|.+||||||+.+.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999864
No 280
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.34 E-value=0.036 Score=54.75 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|+|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 281
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.31 E-value=0.04 Score=50.32 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.++++|..|||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 588999999999999998664
No 282
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.31 E-value=0.039 Score=53.80 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|+|..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999973
No 283
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.27 E-value=0.041 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999973
No 284
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.21 E-value=0.035 Score=50.17 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~ 63 (610)
.++++|+.|||||||++.|.|.- |..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l--~~~ 60 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI--GHQ 60 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT--TCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC--CCC
Confidence 58899999999999999999962 643
No 285
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.18 E-value=0.03 Score=56.47 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.+++||+.|||||||++.|+|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6999999999999999999996
No 286
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.16 E-value=0.037 Score=55.82 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=38.8
Q ss_pred HHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 166 VRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 166 ~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
++..+.+.|.+++|++....++......+++..+...+.+.++|+||+|+.++.
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 334689999999998766556554433344444445689999999999998763
No 287
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.10 E-value=0.036 Score=54.59 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..++|+|+.||||||++++|+|.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 36899999999999999999995
No 288
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.09 E-value=0.034 Score=52.45 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+++|..|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 289
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.07 E-value=0.045 Score=53.86 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|+|..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68899999999999999999974
No 290
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.93 E-value=0.04 Score=50.03 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|+++|.+||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999875
No 291
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=92.91 E-value=0.058 Score=54.88 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=47.8
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC--------cc-ccHHHHHHHHHhCC----
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--------DL-ATSDAIKISREVDP---- 201 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~--------d~-~~~~~l~l~~~~~~---- 201 (610)
...+.++||.|-.+. +.++..|.++++++|+|++.+.. +. .-.+++.+...+-.
T Consensus 166 ~v~l~iwDtgGQe~~-------------R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSE-------------RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp TEEEEEEEECCSHHH-------------HTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEcCCchhH-------------HHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 357899999996442 66788899999999999954311 11 11234444444321
Q ss_pred CCCceEEEeecccCCC
Q 007263 202 TGERTFGVLTKIDLMD 217 (610)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (610)
.+.++++|+||+|+..
T Consensus 233 ~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLE 248 (327)
T ss_dssp TTCEEEEEEECHHHHH
T ss_pred CCceEEEEEECchhhh
Confidence 4689999999999863
No 292
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.85 E-value=0.043 Score=51.33 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|+++|.+||||||+++.|.|.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999986
No 293
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=92.78 E-value=0.075 Score=55.10 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCCCc---HHHHHcCcccccCC-
Q 007263 160 QDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTD---AADILEGKSYRLKF- 235 (610)
Q Consensus 160 ~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~~- 235 (610)
+..+++...|.+.++.+++|++..+.+ ......+...-. +.++++|+||+|+.++... ..+.+.......+.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~---~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~ 132 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFN---GSWLPGLHRFVG-NNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK 132 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHH---HHCCTTHHHHSS-SSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCc---ccHHHHHHHHhC-CCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC
Confidence 345777888888999999999876421 111111222222 6899999999999865432 22222211112222
Q ss_pred --CeeEeeeCChhhhhccccHH
Q 007263 236 --PWIGVVNRSQADINKNVDMI 255 (610)
Q Consensus 236 --g~~~v~~~s~~~~~~~~~~~ 255 (610)
.++.+++.+..+++.+...+
T Consensus 133 ~~~v~~iSA~~g~gi~~L~~~l 154 (368)
T 3h2y_A 133 PEDVFLISAAKGQGIAELADAI 154 (368)
T ss_dssp CSEEEECCTTTCTTHHHHHHHH
T ss_pred cccEEEEeCCCCcCHHHHHhhh
Confidence 34555555556665554443
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.76 E-value=0.043 Score=55.22 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++|+|+.|||||||++.|+|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999999985
No 295
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.74 E-value=0.25 Score=49.47 Aligned_cols=67 Identities=7% Similarity=0.052 Sum_probs=38.3
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc-HHHHHHHHHhC-CCCCceE-EEee
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVD-PTGERTF-GVLT 211 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~-~~~l~l~~~~~-~~~~rti-~Vlt 211 (610)
..+++|||||+..... .+...+..+|.+|+++.+....... ...++.++.+. ..+.+.+ +|+|
T Consensus 156 ~yD~ViiD~p~~~~~~--------------~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N 221 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG--------------GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVAN 221 (307)
T ss_dssp SCSEEEEEECCSSCCG--------------GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEE
T ss_pred cCCEEEEeCCCccchH--------------HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEe
Confidence 4689999998754421 1234567899998888665322211 12233333332 1234544 7899
Q ss_pred cccC
Q 007263 212 KIDL 215 (610)
Q Consensus 212 K~D~ 215 (610)
+++.
T Consensus 222 ~~~~ 225 (307)
T 3end_A 222 RSRA 225 (307)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 9983
No 296
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.74 E-value=0.024 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
+.|+|+|..|||||||++.|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999986
No 297
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.62 E-value=0.076 Score=48.61 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
.-++++|++|+|||||+.+|.|.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999985
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.49 E-value=0.037 Score=52.49 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~ 67 (610)
.++++|+.|||||||++.|+|. -|. +|.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl--~p~-~G~I 52 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ--ALQ-SKQV 52 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH--HHH-TTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCc-CCee
Confidence 5889999999999999999997 254 3544
No 299
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.46 E-value=0.07 Score=51.71 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhh---CCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIV---GKD 58 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~---G~~ 58 (610)
..|+|+|.+||||||+++.|. |..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 479999999999999999999 874
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.45 E-value=0.05 Score=50.97 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|+++|..||||||+++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999864
No 301
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.40 E-value=0.052 Score=50.17 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
-|+++|.+||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999986
No 302
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.31 E-value=0.073 Score=52.42 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=22.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~ 63 (610)
.++++|+.|||||||++.|.|.. |.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~--p~~ 57 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL--PYS 57 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCC
Confidence 67899999999999999999973 653
No 303
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.16 E-value=0.076 Score=47.82 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCCHHHHHhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESI 54 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal 54 (610)
+.|+++|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 56999999999999999999
No 304
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.15 E-value=0.054 Score=55.85 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+|+|+.||||||++++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999996
No 305
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=92.12 E-value=0.069 Score=54.98 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=46.4
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCC--------cc-ccHHHHHHHHHhC----C
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--------DL-ATSDAIKISREVD----P 201 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~--------d~-~~~~~l~l~~~~~----~ 201 (610)
...+.++||+|-.+. +.+...|.++++++|+|++.+.. +. .-.++..+...+. .
T Consensus 182 ~v~l~iwDtaGQe~~-------------r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNE-------------RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTTG-------------GGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchhh-------------hHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 356899999997553 55678899999999999986511 11 1123333443332 2
Q ss_pred CCCceEEEeecccCC
Q 007263 202 TGERTFGVLTKIDLM 216 (610)
Q Consensus 202 ~~~rti~VltK~D~~ 216 (610)
.+.++|+|.||+|+.
T Consensus 249 ~~~piiLvgNK~DL~ 263 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIF 263 (354)
T ss_dssp SSCEEEEEEECHHHH
T ss_pred CCCeEEEEEECcchh
Confidence 468999999999985
No 306
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.00 E-value=0.058 Score=54.57 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+|+|..|||||||++.|.|.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhh
Confidence 6889999999999999999995
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.00 E-value=0.062 Score=48.89 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|+++|.+||||||+.+.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 36899999999999999998753
No 308
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.99 E-value=0.069 Score=53.39 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|+|.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5889999999999999999997
No 309
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.99 E-value=0.059 Score=51.21 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~ 65 (610)
.++++|+.|||||||+..|+|.-..|.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 688999999999999999999533444443
No 310
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.94 E-value=0.063 Score=50.06 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|..|+|||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999985
No 311
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.90 E-value=0.05 Score=52.19 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=15.2
Q ss_pred eEEEEcCCCCCHHHHHhhhh-CC
Q 007263 36 AIAVVGGQSSGKSSVLESIV-GK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~-G~ 57 (610)
.|+++|+.|||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999 86
No 312
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.89 E-value=0.06 Score=49.35 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
-.-.+|+|+.+|||||+++||.+.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999874
No 313
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.77 E-value=0.098 Score=47.76 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|.|+++|.+|||||||++.|++.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4688999999999999999999874
No 314
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.76 E-value=0.091 Score=47.35 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|+++|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999974
No 315
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.67 E-value=0.069 Score=52.13 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhh---CCCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIV---GKDF 59 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~---G~~~ 59 (610)
-..|+++|..||||||+++.|. |..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 3579999999999999999999 8753
No 316
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=91.67 E-value=0.081 Score=54.85 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 162 IENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 162 i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
.+++...+...++.+++|++....+. +....+.+.+. +.++++|+||+|+.++.
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l~--~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFAA--DNPILLVGNKADLLPRS 114 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHCT--TSCEEEEEECGGGSCTT
T ss_pred HHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHhC--CCCEEEEEEChhcCCCc
Confidence 46677778889999999998765432 11111233332 68999999999998764
No 317
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.56 E-value=0.079 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
+.|+++|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999863
No 318
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.43 E-value=0.06 Score=56.73 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
.-|+|+|+.||||||++++|+|.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999996
No 319
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.40 E-value=0.078 Score=49.59 Aligned_cols=23 Identities=30% Similarity=0.236 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|+++|..||||||+.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999885
No 320
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=91.30 E-value=0.37 Score=45.52 Aligned_cols=95 Identities=12% Similarity=0.140 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEeecCCCccc-cHHHH-HHHHHhCC----CCCceEEEeecc-cCCCCCCcHHHHHcCc-cc
Q 007263 160 QDIENMVRSYIEKPNCIILAISPANQDLA-TSDAI-KISREVDP----TGERTFGVLTKI-DLMDKGTDAADILEGK-SY 231 (610)
Q Consensus 160 ~~i~~~~~~yi~~~d~iil~v~~a~~d~~-~~~~l-~l~~~~~~----~~~rti~VltK~-D~~~~~~~~~~~l~~~-~~ 231 (610)
..++.+++.|.++.|+||+|||++..+.. ..+.+ ++.+-+++ .+.+.++..||- |+... -...++.... ..
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A-ms~~EI~e~L~L~ 191 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-MPCFYLAHELHLN 191 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB-CCHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC-CCHHHHHHHcCCc
Confidence 35688999999999999999998765322 22222 12222322 467888888996 55322 1223332211 11
Q ss_pred ccCCCeeEe--eeCChhhhhccccHH
Q 007263 232 RLKFPWIGV--VNRSQADINKNVDMI 255 (610)
Q Consensus 232 ~l~~g~~~v--~~~s~~~~~~~~~~~ 255 (610)
.+...|+.. ++.+.+++.++.+++
T Consensus 192 ~l~R~W~Iq~csA~TGeGL~EGLdWL 217 (227)
T 3l82_B 192 LLNHPWLVQDTEAETLTGFLNGIEWI 217 (227)
T ss_dssp GGCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred CCCCCEEEEEeECCCCcCHHHHHHHH
Confidence 234577754 445556666555543
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.27 E-value=0.08 Score=51.32 Aligned_cols=22 Identities=50% Similarity=0.667 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+++|+.|||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 322
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.24 E-value=0.19 Score=50.15 Aligned_cols=24 Identities=33% Similarity=0.178 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
-..|+|+|.+|||||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999875
No 323
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.24 E-value=0.097 Score=53.97 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 58999999999999999999974
No 324
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.20 E-value=0.099 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.||||||||+.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999999974
No 325
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.14 E-value=0.11 Score=48.73 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.|+++|..||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 326
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.09 E-value=0.096 Score=53.89 Aligned_cols=23 Identities=22% Similarity=0.605 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68899999999999999999974
No 327
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.02 E-value=0.087 Score=49.23 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.|+|+|..||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 328
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.99 E-value=0.084 Score=54.80 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+|+|+.||||||++++|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999995
No 329
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.98 E-value=0.11 Score=48.72 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+|+|.+||||||+.+.|.+.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999999985
No 330
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.97 E-value=0.11 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 68899999999999999999973
No 331
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.94 E-value=0.096 Score=50.25 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+++|..||||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999986
No 332
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.91 E-value=0.11 Score=53.63 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58899999999999999999974
No 333
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.87 E-value=0.064 Score=54.38 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.+|.++|+|..|||||||++.|+|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999999863
No 334
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.83 E-value=0.099 Score=48.84 Aligned_cols=22 Identities=50% Similarity=0.545 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|+++|.+||||||+.+.|.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 335
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.81 E-value=0.13 Score=47.84 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+++|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999863
No 336
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.80 E-value=0.11 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 68899999999999999999974
No 337
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.80 E-value=0.079 Score=54.77 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
-.++|+|..|||||||++.|.|.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999996
No 338
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.77 E-value=0.11 Score=46.20 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~ 55 (610)
+-.+|+|+.++||||+++||.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999986
No 339
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.76 E-value=0.11 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 68899999999999999999973
No 340
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.68 E-value=0.12 Score=46.84 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 489999999999999999975
No 341
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.56 E-value=0.12 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.||||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58899999999999999999974
No 342
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.53 E-value=0.093 Score=52.88 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+|+|..|||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 343
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.35 E-value=0.1 Score=48.85 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|+|+|..||||||+++.|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 344
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.15 E-value=0.094 Score=46.73 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
-..++++|++|+|||+|++++.|.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999985
No 345
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.10 E-value=0.15 Score=46.35 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
-|+++|.+||||||+.++|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999853
No 346
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.06 E-value=0.12 Score=49.77 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.++++|+.|||||||+..|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999994
No 347
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.04 E-value=0.11 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.=+.++|+|+.|||||||++.|+|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45789999999999999999999973
No 348
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=89.94 E-value=0.092 Score=51.65 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCC
Q 007263 163 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (610)
Q Consensus 163 ~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 218 (610)
.+.+...++++|.||.|+++..........+. .+ +.+.++|+||+|+.+.
T Consensus 12 ~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~---ll---~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 12 KRQIKDLLRLVNTVVEVRDARAPFATSAYGVD---FS---RKETIILLNKVDIADE 61 (262)
T ss_dssp THHHHHHHTTCSEEEEEEETTSTTTTSCTTSC---CT---TSEEEEEEECGGGSCH
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH---hc---CCCcEEEEECccCCCH
Confidence 44578889999999999986543222111111 12 7899999999999864
No 349
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.92 E-value=0.1 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.||||||||+.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 68899999999999999999974
No 350
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.84 E-value=0.14 Score=47.73 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|+++|.+||||||+...|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 351
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.78 E-value=0.15 Score=46.83 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 352
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.73 E-value=0.16 Score=46.52 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|+++|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 353
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.70 E-value=0.15 Score=53.18 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|.|.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999999996
No 354
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.51 E-value=0.19 Score=46.16 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
-+.|+++|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998653
No 355
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.47 E-value=0.2 Score=45.89 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~ 55 (610)
.+.|+++|.+||||||+...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999996
No 356
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.43 E-value=0.14 Score=51.89 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
-|+++|.+|||||||++.|.|.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 357
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.34 E-value=0.19 Score=46.05 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~ 55 (610)
|.|+++|.+||||||+-..|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 569999999999999998885
No 358
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.26 E-value=0.16 Score=55.95 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.+++||+.|||||||++.|.|..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999963
No 359
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.18 E-value=0.1 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.||||||||+.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999999973
No 360
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.16 E-value=0.18 Score=46.38 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 361
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.12 E-value=0.19 Score=45.94 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHhhhh
Q 007263 36 AIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~ 55 (610)
.|+++|.+||||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 362
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.09 E-value=0.2 Score=45.45 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
+.|+++|.+||||||+...|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 363
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.06 E-value=0.43 Score=43.14 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
-+.++++|++|+|||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999764
No 364
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.05 E-value=0.21 Score=55.12 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999996
No 365
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.98 E-value=0.21 Score=47.02 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHhhhh
Q 007263 36 AIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~ 55 (610)
.|+|+|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999995
No 366
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.89 E-value=0.18 Score=55.61 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.+++||+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 367
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.86 E-value=0.24 Score=45.13 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~ 55 (610)
..+.|+++|.+||||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34679999999999999999997
No 368
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.77 E-value=0.27 Score=53.65 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=24.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T 68 (610)
.++|+|..|||||||++.|+|.. |-.+|.++
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~i~ 344 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKIE 344 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCeEEE
Confidence 68899999999999999999973 33345443
No 369
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.76 E-value=0.21 Score=46.63 Aligned_cols=22 Identities=36% Similarity=0.270 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|++.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 370
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.74 E-value=0.21 Score=46.40 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|+++|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 371
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.69 E-value=0.2 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G 56 (610)
..+-.+|+|+.||||||++++|+.
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999999983
No 372
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.65 E-value=0.22 Score=45.94 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.|++.|..||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 373
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.64 E-value=0.24 Score=53.98 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=24.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~ 67 (610)
.++++|..|||||||++.|+|.. |-.+|.+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i 325 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI--TADEGSV 325 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CCSBCCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 58899999999999999999973 3334543
No 374
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.56 E-value=0.18 Score=45.92 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|+++|..||||||+.+.|.+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 375
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.55 E-value=0.23 Score=46.73 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999953
No 376
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.42 E-value=0.23 Score=45.69 Aligned_cols=23 Identities=48% Similarity=0.579 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G 56 (610)
-+.|+++|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 377
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.42 E-value=0.27 Score=54.34 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T 68 (610)
.++++|..|||||||++.|+|.. +-.+|.++
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~I~ 414 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKVE 414 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceEEE
Confidence 68899999999999999999963 33335443
No 378
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.19 E-value=0.26 Score=44.43 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
+.|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998863
No 379
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.16 E-value=0.19 Score=55.67 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.+++||+.|||||||++.|.|..
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 69999999999999999999963
No 380
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.12 E-value=0.24 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|.-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 381
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.10 E-value=0.18 Score=55.73 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|.|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999996
No 382
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.07 E-value=0.25 Score=45.35 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999964
No 383
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.98 E-value=0.2 Score=49.47 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHhhhhCC
Q 007263 37 IAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 37 IvVvG~~ssGKSSllnal~G~ 57 (610)
++++|++|+|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999985
No 384
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=87.98 E-value=0.21 Score=45.84 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|+++|.+||||||+.+.|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 385
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.87 E-value=0.52 Score=48.22 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=31.6
Q ss_pred CcchHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 1 ~~~l~~~~~~lq~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
|-.+-.+++++-+.++..-.. -..|.|+++|.+|+||||+..+|.+.
T Consensus 1 ~~~~~~L~~~il~~l~~~i~~----------g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 1 MVDTHKLADDVLQLLDNRIED----------NYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp -CCHHHHHHHHHHHHHHTTTT----------CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcc----------CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 344556666655554322111 14578999999999999999998864
No 386
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.87 E-value=0.24 Score=46.35 Aligned_cols=22 Identities=32% Similarity=0.288 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|+++|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 387
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.87 E-value=0.21 Score=48.45 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHhhhhCC
Q 007263 37 IAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 37 IvVvG~~ssGKSSllnal~G~ 57 (610)
++++|++|+|||||+++|.|.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999985
No 388
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.83 E-value=0.26 Score=45.17 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.|+++|.++|||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 389
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.74 E-value=0.22 Score=47.13 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
-++++|++|+|||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5788999999999999999975
No 390
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=87.70 E-value=0.25 Score=46.25 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|+++|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999974
No 391
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.70 E-value=0.3 Score=43.78 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 392
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.62 E-value=0.12 Score=48.45 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+|+|..||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 393
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.50 E-value=0.27 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.578 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|+|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999999973
No 394
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.49 E-value=0.29 Score=45.18 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
+.|+++|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 395
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.34 E-value=0.27 Score=46.17 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~ 55 (610)
-+-.+|+|+.++||||+++||.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 3578999999999999999986
No 396
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.23 E-value=0.23 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
-.++++|+.|||||||+++|.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 56899999999999999999996
No 397
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=87.20 E-value=0.27 Score=54.20 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|..
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 58999999999999999999963
No 398
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.18 E-value=0.22 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
-++|+|.+|+|||||+..|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999999986
No 399
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.08 E-value=0.28 Score=54.19 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|+|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999999973
No 400
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.98 E-value=0.31 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G 56 (610)
-..|+++|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999973
No 401
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.95 E-value=0.31 Score=53.87 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|||||||++.|.|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999999973
No 402
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.85 E-value=0.27 Score=47.89 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G 56 (610)
-..|+++|..||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999965
No 403
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.76 E-value=0.32 Score=45.91 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|+|+|..||||||+.+.|.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 404
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.71 E-value=0.31 Score=44.57 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
+.|+++|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999863
No 405
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=86.70 E-value=0.31 Score=47.61 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G 56 (610)
-+.|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 406
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.67 E-value=0.31 Score=45.35 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
|.|++.|.+||||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 407
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.62 E-value=0.33 Score=45.70 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 408
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=86.59 E-value=0.34 Score=45.04 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=20.4
Q ss_pred CCC-eEEEEcCCCCCHHHHHhhhhC
Q 007263 33 SLP-AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 33 ~lP-~IvVvG~~ssGKSSllnal~G 56 (610)
..| .|+++|.++|||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344 699999999999999999864
No 409
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.36 E-value=0.34 Score=45.88 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 410
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.34 E-value=0.38 Score=45.41 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|+++|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 411
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=86.33 E-value=0.36 Score=44.87 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G 56 (610)
...|+++|.+||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999873
No 412
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.33 E-value=0.28 Score=48.29 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHhhhhCC
Q 007263 37 IAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 37 IvVvG~~ssGKSSllnal~G~ 57 (610)
|+++|++|+|||||+++|.|.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999985
No 413
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.25 E-value=0.33 Score=44.91 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
-..|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346999999999999999999854
No 414
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.22 E-value=0.33 Score=49.40 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
.+.++++|++|+|||||+++|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999999985
No 415
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.17 E-value=0.57 Score=45.32 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
-|+++|++|+|||++..+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999999874
No 416
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=86.14 E-value=1.3 Score=43.87 Aligned_cols=94 Identities=9% Similarity=0.091 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCeEEEEeecCCCcc-ccHHHHH----HHHHhC-CCCCceEEEeecc-cCCCCCCcHHHHHcCc-cccc
Q 007263 162 IENMVRSYIEKPNCIILAISPANQDL-ATSDAIK----ISREVD-PTGERTFGVLTKI-DLMDKGTDAADILEGK-SYRL 233 (610)
Q Consensus 162 i~~~~~~yi~~~d~iil~v~~a~~d~-~~~~~l~----l~~~~~-~~~~rti~VltK~-D~~~~~~~~~~~l~~~-~~~l 233 (610)
++.+.+.|.++.|+||+||+++..+- ...+.+. ++.+-. ..+.+.++..||- |+...- ...++.+.. ...+
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Am-s~~EI~e~L~L~~l 278 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM-PCFYLAHELHLNLL 278 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBC-CHHHHHHHTTGGGG
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCC-CHHHHHHHcCCccC
Confidence 48889999999999999999876532 2222221 222211 2578889999974 663222 223332211 1113
Q ss_pred CCCeeE--eeeCChhhhhccccHHH
Q 007263 234 KFPWIG--VVNRSQADINKNVDMIA 256 (610)
Q Consensus 234 ~~g~~~--v~~~s~~~~~~~~~~~~ 256 (610)
...|+. .++.+.+++.++.+++.
T Consensus 279 ~r~W~Iq~csA~tGeGL~EGldWL~ 303 (312)
T 3l2o_B 279 NHPWLVQDTEAETLTGFLNGIEWIL 303 (312)
T ss_dssp CSCEEEEEEETTTCTTHHHHHHHHH
T ss_pred CCcEEEEecccCCCcCHHHHHHHHH
Confidence 457764 44556677766666554
No 417
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.02 E-value=0.32 Score=48.35 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
-|+++|.+||||||+...|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999975
No 418
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.02 E-value=3.1 Score=43.73 Aligned_cols=25 Identities=16% Similarity=0.416 Sum_probs=21.5
Q ss_pred CCC-eEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLP-AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP-~IvVvG~~ssGKSSllnal~G~ 57 (610)
..| -|.+.|++|+|||++..|+.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 445 5999999999999999999864
No 419
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=85.93 E-value=0.3 Score=50.60 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+++|++|+|||||+++|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999974
No 420
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.87 E-value=0.64 Score=41.87 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
-+-|+++|++|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999764
No 421
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.83 E-value=0.31 Score=47.41 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
-|+|+|.++||||||-..|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999975
No 422
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.77 E-value=0.26 Score=44.81 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=15.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999863
No 423
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.50 E-value=0.34 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|+++|.+||||||+.+.|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999864
No 424
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.43 E-value=0.78 Score=42.47 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|.+++.|++|+|||+++.++...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 455999999999999999999753
No 425
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=85.39 E-value=0.44 Score=45.29 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 426
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=85.37 E-value=0.44 Score=42.79 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhh
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~ 55 (610)
....|+++|.+||||||+-+.|.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999985
No 427
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.32 E-value=0.43 Score=44.41 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G 56 (610)
-..|+++|..+|||||+.+.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998863
No 428
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.29 E-value=0.35 Score=45.31 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.++++|++|+|||||+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 429
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=85.15 E-value=0.79 Score=49.28 Aligned_cols=49 Identities=14% Similarity=0.343 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCC-eEEEEcCCCCCHHHHHhhhhCC
Q 007263 6 SLVNKIQRACTALGDHGEASALPTLWDSLP-AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 6 ~~~~~lq~~~~~~~~~~~~~~l~~~~~~lP-~IvVvG~~ssGKSSllnal~G~ 57 (610)
+.+..++++...++... .+..+...+| -|+++|++|+|||+|+++|.|.
T Consensus 38 ~~k~~l~~lv~~l~~~~---~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 38 EAKEELKEIVEFLKNPS---RFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp HHHHHHHHHHHHHHCGG---GTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchh---hhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45566666665555421 1111222333 3999999999999999999985
No 430
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=85.13 E-value=3 Score=48.34 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=18.0
Q ss_pred eEEEEcCCCCCHHHHHhhh
Q 007263 36 AIAVVGGQSSGKSSVLESI 54 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal 54 (610)
.++++|+.++||||+|+.+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999999
No 431
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.93 E-value=0.7 Score=43.42 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.+++.|++|+||||+..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999888875
No 432
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=84.92 E-value=0.079 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++|+|+.|||||||+++|.|..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 36789999999999999999963
No 433
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.76 E-value=0.36 Score=46.47 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~ 55 (610)
..|+++|.+||||||+.+.|.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 434
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.73 E-value=0.44 Score=52.67 Aligned_cols=22 Identities=18% Similarity=0.548 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHhhhhCCC
Q 007263 37 IAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 37 IvVvG~~ssGKSSllnal~G~~ 58 (610)
++++|..|||||||++.|.|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999999974
No 435
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=84.71 E-value=0.41 Score=48.76 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhh
Q 007263 35 PAIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~ 55 (610)
+-.+++|+.|+||||+++||.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999985
No 436
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=84.66 E-value=0.37 Score=49.37 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|+|||||++.|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999973
No 437
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.65 E-value=0.39 Score=45.83 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCc
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKDFLP 61 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~~lP 61 (610)
-++++|++|+|||||+..|++.-.+|
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~ 51 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLP 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCc
Confidence 58899999999999999999853333
No 438
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.56 E-value=0.41 Score=48.71 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
+.|.++++|++|+||||++.+|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5677999999999999999999984
No 439
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=84.47 E-value=0.51 Score=45.56 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|+++|.+||||||+.+.|..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999963
No 440
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=84.26 E-value=4.9 Score=38.80 Aligned_cols=89 Identities=11% Similarity=0.136 Sum_probs=51.9
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc-HHHHHHHHHhCCCCCceEEEeecc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPTGERTFGVLTKI 213 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~-~~~l~l~~~~~~~~~rti~VltK~ 213 (610)
..++.|||+|+-.. ..+...+..+|.+|+++.+....... ....+.++.+.+ +.+..+|+|+.
T Consensus 144 ~yD~viiD~pp~~~---------------~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~-~~~~~vv~N~~ 207 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD---------------VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNL-FLPIFLIITRF 207 (267)
T ss_dssp TCSEEEEEECSSCS---------------HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTC-CCCEEEEEEEE
T ss_pred CCCEEEEECcCCcc---------------HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhc-cCCEEEEEecc
Confidence 35799999997543 12456677799999988775433221 122233333332 35678999999
Q ss_pred cCCCCCCcHHHHHcCcccccCCCeeEeeeCC
Q 007263 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRS 244 (610)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 244 (610)
+......+..+.+.. +..+.++.+.+
T Consensus 208 ~~~~~~~~~~~~l~~-----~~~~~~~Ip~~ 233 (267)
T 3k9g_A 208 KKNRTHKTLFEILKT-----KDRFLGTISER 233 (267)
T ss_dssp CTTCSCCHHHHHHTT-----STTEEEEEEC-
T ss_pred cCcchHHHHHHHHhc-----CcccceecCcH
Confidence 543333345555543 44566666654
No 441
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=84.14 E-value=0.52 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|+++|.++|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999853
No 442
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=83.93 E-value=0.58 Score=44.70 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|+++|.++|||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 443
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=83.87 E-value=0.5 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G 56 (610)
.-|.++|+|.+|||||+++++|+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999985
No 444
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=83.83 E-value=0.41 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++++|+.|+|||||++.|.|..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999963
No 445
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.72 E-value=0.54 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|++.|.+||||||+++.|.+.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999875
No 446
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=83.64 E-value=0.37 Score=46.85 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|+++|.+||||||+...|.+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999999764
No 447
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.64 E-value=0.47 Score=57.43 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++|||+.|||||||++.|+|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 6999999999999999999996
No 448
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=83.55 E-value=0.48 Score=49.97 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~~ 58 (610)
...+++|+.|+|||||+++|.+.-
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 468999999999999999999863
No 449
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=83.45 E-value=0.45 Score=48.92 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
.-+..+++|+.|+||||++++|.+.
T Consensus 25 ~~g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 25 PEGVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCChhHHHHHHHHh
Confidence 3346899999999999999999864
No 450
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=83.22 E-value=1.6 Score=38.13 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
.-|.+.|++|+|||++..+|...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 34899999999999999999764
No 451
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.19 E-value=0.75 Score=46.65 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
.+|.+++.|++|+||||++.++.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999999999985
No 452
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=83.06 E-value=0.42 Score=49.07 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=31.5
Q ss_pred HhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceEEEeecccCCCCC
Q 007263 169 YIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (610)
Q Consensus 169 yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 219 (610)
.+.+.|.+++| ++...++.....-+++......+.+.++|+||+|+.++.
T Consensus 127 i~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~ 176 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDE 176 (358)
T ss_dssp EEECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHH
T ss_pred HHhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCch
Confidence 36789988865 455544443332233322233478899999999998653
No 453
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=82.97 E-value=0.54 Score=56.74 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.+++||+.|||||||++.|.|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999996
No 454
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=82.92 E-value=0.43 Score=57.78 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|++||..|||||||++.|.|.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6999999999999999999986
No 455
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=82.86 E-value=0.6 Score=45.18 Aligned_cols=22 Identities=55% Similarity=0.622 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
..|+|.|.++|||||+-+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998854
No 456
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=82.85 E-value=1.6 Score=45.32 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
+-|+|+|+++||||||...|..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 4689999999999999998863
No 457
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.82 E-value=0.48 Score=47.83 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
-+..+++|+.|||||||++||...
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHHT
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH
Confidence 357899999999999999999843
No 458
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=82.77 E-value=0.55 Score=48.48 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhh
Q 007263 34 LPAIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~ 55 (610)
-+-.+++|+.||||||+|+||.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999985
No 459
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=82.75 E-value=0.19 Score=52.72 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
-+.++++|..|||||||+++|.+.
T Consensus 60 ~G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 60 GGFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp SSEEEEEESHHHHHHHHTHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999775
No 460
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=82.58 E-value=3.3 Score=40.05 Aligned_cols=66 Identities=18% Similarity=0.115 Sum_probs=39.6
Q ss_pred CCCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceE-EEeecc
Q 007263 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTF-GVLTKI 213 (610)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti-~VltK~ 213 (610)
..+++|||+||-... ..+....+..+|.+|+++.+..... .........+...+.+.+ +|+|+.
T Consensus 128 ~yD~ViID~pp~~~~-------------~~~~~~~~~~aD~viiv~~~~~~s~--~~~~~~~~~l~~~~~~~~gvV~N~~ 192 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGD-------------APLTVMQDAKPTGVVVVSTPQELTA--VIVEKAINMAEETNTSVLGLVENMS 192 (262)
T ss_dssp SCSEEEEECCSSSSS-------------HHHHHHHHHCCSEEEEEECSSSCCH--HHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred CCCEEEEECcCCCch-------------HHHHHHhhccCCeEEEEecCccchH--HHHHHHHHHHHhCCCCEEEEEECCC
Confidence 458999999985431 1111112236898888887654332 334444444544567777 789998
Q ss_pred cC
Q 007263 214 DL 215 (610)
Q Consensus 214 D~ 215 (610)
|.
T Consensus 193 ~~ 194 (262)
T 2ph1_A 193 YF 194 (262)
T ss_dssp CE
T ss_pred cc
Confidence 85
No 461
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=82.25 E-value=0.6 Score=46.20 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHhhhh
Q 007263 36 AIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~ 55 (610)
.|+|+|.+||||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999997
No 462
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.25 E-value=1.3 Score=38.65 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
.-|.+.|++|+|||++..+|...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 34899999999999999999765
No 463
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.21 E-value=0.52 Score=46.43 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.++|+|++|+|||||+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 464
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=82.14 E-value=0.6 Score=44.67 Aligned_cols=24 Identities=42% Similarity=0.416 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G 56 (610)
.-..|+++|.+||||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 465
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=81.97 E-value=0.77 Score=43.34 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
-+-+++.|++|+|||+++.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999864
No 466
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=81.93 E-value=0.68 Score=45.96 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 467
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=81.92 E-value=1.2 Score=43.62 Aligned_cols=65 Identities=17% Similarity=0.345 Sum_probs=40.1
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceE-EEeeccc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTF-GVLTKID 214 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti-~VltK~D 214 (610)
.+++|||||+..... . +......+|.+|+++.+.... ........+.+...+.+.+ +|+|++|
T Consensus 192 yD~VIIDtpp~~~~~------------d--~~~l~~~aD~vilVv~~~~~~--~~~~~~~~~~l~~~~~~~~GvVlN~~~ 255 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT------------D--AQLFSKFTGNVVYVVNSENNN--KDEVKKGKELIEATGAKLLGVVLNRMP 255 (271)
T ss_dssp CSEEEEECCCTTTCS------------H--HHHHHHHHCEEEEEEETTSCC--HHHHHHHHHHHHTTTCEEEEEEEEEEC
T ss_pred CCEEEEeCCCCchHH------------H--HHHHHHHCCEEEEEEeCCCCc--HHHHHHHHHHHHhCCCCEEEEEEeCCc
Confidence 478999999875431 1 122334578898888765433 2333344455555567777 6789998
Q ss_pred CC
Q 007263 215 LM 216 (610)
Q Consensus 215 ~~ 216 (610)
..
T Consensus 256 ~~ 257 (271)
T 3bfv_A 256 KD 257 (271)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 468
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=81.88 E-value=1.1 Score=41.89 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
-++|.|++|+|||+++.++...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 469
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=81.85 E-value=0.8 Score=48.94 Aligned_cols=49 Identities=18% Similarity=0.411 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCC-eEEEEcCCCCCHHHHHhhhhCC
Q 007263 6 SLVNKIQRACTALGDHGEASALPTLWDSLP-AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 6 ~~~~~lq~~~~~~~~~~~~~~l~~~~~~lP-~IvVvG~~ssGKSSllnal~G~ 57 (610)
+.+.+|+++...++... .+..+....| -|+++|++|+|||+|..+|.|.
T Consensus 23 ~~~~~l~e~v~~l~~~~---~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 23 EAIEELKEVVEFLKDPS---KFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp HHHHHHHHHHHHHHCTH---HHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhChH---HHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45566666655554321 0111112334 4999999999999999999874
No 470
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=81.63 E-value=0.45 Score=55.19 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.++|+|..|||||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 471
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=81.10 E-value=0.7 Score=47.40 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|-++|.|++|+||||+++++.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999875
No 472
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.09 E-value=0.93 Score=45.52 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
+-|+|+|+++||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 56899999999999999999753
No 473
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=80.92 E-value=0.87 Score=42.79 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+++|+|||||+|.-..|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988853
No 474
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=80.25 E-value=0.98 Score=41.74 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
+-|++.|++|+|||+|+.+|.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999864
No 475
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=80.16 E-value=0.78 Score=44.66 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
+...|+|.|..||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999754
No 476
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=79.66 E-value=7.2 Score=39.21 Aligned_cols=24 Identities=4% Similarity=0.059 Sum_probs=20.6
Q ss_pred CCCe-EEEEcCCCCCHHHHHhhhhC
Q 007263 33 SLPA-IAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 33 ~lP~-IvVvG~~ssGKSSllnal~G 56 (610)
++|. +++.|++|+|||++..++..
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHH
Confidence 4565 89999999999999998875
No 477
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=79.45 E-value=2.5 Score=40.57 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
+-|++.|++|+|||++..++.+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999763
No 478
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=79.26 E-value=0.93 Score=49.32 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G 56 (610)
..|.++|+|.++||||++|++|+.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999875
No 479
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=79.17 E-value=2.4 Score=41.95 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=40.4
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCccccHHHHHHHHHhCCCCCceE-EEeeccc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTF-GVLTKID 214 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~~~~l~l~~~~~~~~~rti-~VltK~D 214 (610)
.+++|||||+..... . +......+|.+|+++.+..... .......+.+...+.+.+ +|+|++|
T Consensus 202 yD~VIIDtpp~~~~~------------d--a~~l~~~aD~vllVv~~~~~~~--~~~~~~~~~l~~~g~~~~GvVlN~v~ 265 (286)
T 3la6_A 202 YDLVLIDTPPILAVT------------D--AAIVGRHVGTTLMVARYAVNTL--KEVETSLSRFEQNGIPVKGVILNSIF 265 (286)
T ss_dssp CSEEEEECCCTTTCT------------H--HHHHTTTCSEEEEEEETTTSBH--HHHHHHHHHHHHTTCCCCEEEEEEEC
T ss_pred CCEEEEcCCCCcchH------------H--HHHHHHHCCeEEEEEeCCCCcH--HHHHHHHHHHHhCCCCEEEEEEcCcc
Confidence 478999999876532 1 2334567999999987765432 223333444444445544 6799998
Q ss_pred CC
Q 007263 215 LM 216 (610)
Q Consensus 215 ~~ 216 (610)
..
T Consensus 266 ~~ 267 (286)
T 3la6_A 266 RR 267 (286)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 480
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=79.13 E-value=0.5 Score=51.55 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+++|..|||||||+++|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 5889999999999999999986
No 481
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=78.95 E-value=1.6 Score=44.34 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
+-|+|+|.++||||+|-..|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
No 482
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=78.88 E-value=1.1 Score=41.97 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|+++|++++|||+|...|...
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999865
No 483
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=78.84 E-value=1.1 Score=42.63 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
-|+|+|+|||||+|.-..|...
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4667999999999999888753
No 484
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=78.73 E-value=1.6 Score=42.53 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
.+-+++.|++|+|||++..++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999753
No 485
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.54 E-value=1.5 Score=44.24 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
..|.+++.|++|+|||+++.++.+.
T Consensus 57 ~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 57 NLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3466999999999999999999875
No 486
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.36 E-value=1.1 Score=44.97 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G 56 (610)
+-|+|+|+++||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4578899999999999999974
No 487
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=78.31 E-value=0.86 Score=52.88 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.|||||||++.|.|-
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999953
No 488
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=78.13 E-value=1.1 Score=41.18 Aligned_cols=21 Identities=48% Similarity=0.754 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHhhhhCC
Q 007263 37 IAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 37 IvVvG~~ssGKSSllnal~G~ 57 (610)
|.|+|..+||||++-+.|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999743
No 489
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=78.00 E-value=1 Score=43.08 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.|++.|..||||||+.+.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 490
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=77.95 E-value=1.1 Score=47.15 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007263 36 AIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G 56 (610)
-|+++|.+||||||+.+.|..
T Consensus 260 lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588899999999999999975
No 491
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=77.83 E-value=0.95 Score=50.67 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHhhhh
Q 007263 36 AIAVVGGQSSGKSSVLESIV 55 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~ 55 (610)
.++|+|+.|||||||++.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 58999999999999999875
No 492
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=77.72 E-value=1.1 Score=46.40 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.-+.++|+|.+|+|||++++.|++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56889999999999999999999763
No 493
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=77.66 E-value=1.6 Score=40.83 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=41.6
Q ss_pred CCCcEEEeCCCC-CccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc-HHHHHHHHHhCCCCCceEEEeec
Q 007263 135 VVNLTLIDLPGL-TKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPTGERTFGVLTK 212 (610)
Q Consensus 135 ~~~ltlvDtPGi-~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~-~~~l~l~~~~~~~~~rti~VltK 212 (610)
..++.+||+||- ... .+...+..+|.+|+++.+...+... ...++.++.+. +.+..+|+|+
T Consensus 67 ~yD~viiD~p~~~~~~---------------~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~--~~~~~vv~N~ 129 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------------DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLG--NNRFRILLTI 129 (209)
T ss_dssp GCSEEEEEEECCCSSS---------------HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTC--SSSEEEEECS
T ss_pred cCCEEEEeCCCCcCcH---------------HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhcc--CCCEEEEEEe
Confidence 358999999986 431 2445677899998888765433221 12233333332 5678899999
Q ss_pred ccCCC
Q 007263 213 IDLMD 217 (610)
Q Consensus 213 ~D~~~ 217 (610)
+|...
T Consensus 130 ~~~~~ 134 (209)
T 3cwq_A 130 IPPYP 134 (209)
T ss_dssp BCCTT
T ss_pred cCCcc
Confidence 98653
No 494
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=77.31 E-value=0.66 Score=46.15 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVG 56 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G 56 (610)
-+.|+|.|..||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 495
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=77.04 E-value=2.8 Score=39.74 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=41.9
Q ss_pred CCcEEEeCCCCCccccCCCCCchHHHHHHHHHHHhcCCCeEEEEeecCCCcccc-HHHHHHHHHhCCCCCceEEEeeccc
Q 007263 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPTGERTFGVLTKID 214 (610)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~d~iil~v~~a~~d~~~-~~~l~l~~~~~~~~~rti~VltK~D 214 (610)
.++.|||+|+-... .+...+..+|.+|+++.+...+... ...++.++...+...+.-+|+|++|
T Consensus 119 yD~viiD~p~~~~~---------------~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~ 183 (245)
T 3ea0_A 119 YDYIIVDFGASIDH---------------VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRAD 183 (245)
T ss_dssp CSEEEEEEESSCCT---------------THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTT
T ss_pred CCEEEEeCCCCCch---------------HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCC
Confidence 47999999885431 1445678899999988765332211 1223334444333466889999998
Q ss_pred CCC
Q 007263 215 LMD 217 (610)
Q Consensus 215 ~~~ 217 (610)
...
T Consensus 184 ~~~ 186 (245)
T 3ea0_A 184 TNS 186 (245)
T ss_dssp SCT
T ss_pred CCC
Confidence 653
No 496
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=76.83 E-value=1.2 Score=45.16 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007263 35 PAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~G~ 57 (610)
+-|+|+|.++||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 36899999999999999998753
No 497
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=76.77 E-value=2.7 Score=42.19 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
..+.|++.|++|+|||++..+|...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4567999999999999999999754
No 498
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=76.62 E-value=0.97 Score=46.21 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGKD 58 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~~ 58 (610)
.+.|+|++|+|||||+..|+|.-
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999863
No 499
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=76.59 E-value=2.3 Score=41.51 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007263 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~G~ 57 (610)
-.-+++.|++|+|||++..++.+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999764
No 500
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=76.50 E-value=3.4 Score=47.75 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007263 36 AIAVVGGQSSGKSSVLESIVGK 57 (610)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~G~ 57 (610)
.++++|+.++||||+|+.+.+.
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 5899999999999999998754
Done!