Query 007265
Match_columns 610
No_of_seqs 139 out of 264
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 21:25:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kvi_A Nuclear polyadenylated 96.3 0.011 3.9E-07 49.3 7.9 72 173-300 8-79 (96)
2 2cpd_A Apobec-1 stimulating pr 96.3 0.019 6.6E-07 47.9 9.3 73 173-300 13-85 (99)
3 2ytc_A PRE-mRNA-splicing facto 96.3 0.021 7.1E-07 46.0 9.1 66 173-291 10-76 (85)
4 2xnq_A Nuclear polyadenylated 96.3 0.015 5.1E-07 49.0 8.4 64 173-290 20-83 (97)
5 1why_A Hypothetical protein ri 96.1 0.025 8.5E-07 47.0 8.8 75 173-300 15-89 (97)
6 2cq2_A Hypothetical protein LO 96.1 0.014 4.7E-07 52.2 7.5 69 168-289 18-88 (114)
7 2dgt_A RNA-binding protein 30; 96.1 0.021 7E-07 47.1 8.0 72 173-301 8-79 (92)
8 1x4g_A Nucleolysin TIAR; struc 96.0 0.024 8.2E-07 48.2 8.4 74 173-301 23-96 (109)
9 2dgu_A Heterogeneous nuclear r 96.0 0.021 7.3E-07 48.1 7.9 72 173-301 9-80 (103)
10 2hzc_A Splicing factor U2AF 65 95.9 0.015 5.1E-07 47.0 6.5 69 173-291 4-79 (87)
11 3zzy_A Polypyrimidine tract-bi 95.9 0.022 7.6E-07 52.0 8.1 77 174-301 27-103 (130)
12 2cq3_A RNA-binding protein 9; 95.9 0.049 1.7E-06 45.6 9.6 77 173-300 13-89 (103)
13 2e5i_A Heterogeneous nuclear r 95.8 0.028 9.7E-07 50.7 8.3 75 175-301 25-99 (124)
14 1x4c_A Splicing factor, argini 95.8 0.051 1.7E-06 46.3 9.4 65 173-291 13-77 (108)
15 2ywk_A Putative RNA-binding pr 95.7 0.038 1.3E-06 45.4 8.3 71 172-290 13-83 (95)
16 2cpf_A RNA binding motif prote 95.7 0.031 1.1E-06 46.3 7.7 82 173-300 3-84 (98)
17 2fy1_A RNA-binding motif prote 95.7 0.03 1E-06 48.7 7.9 78 173-300 5-82 (116)
18 1wex_A Hypothetical protein (r 95.7 0.048 1.7E-06 47.2 9.0 76 173-301 13-88 (104)
19 3ulh_A THO complex subunit 4; 95.7 0.056 1.9E-06 45.4 9.2 79 173-301 27-105 (107)
20 2dnp_A RNA-binding protein 14; 95.6 0.035 1.2E-06 45.5 7.6 71 173-300 7-77 (90)
21 2d9p_A Polyadenylate-binding p 95.6 0.059 2E-06 45.1 9.1 78 173-301 13-90 (103)
22 2dnq_A RNA-binding protein 4B; 95.6 0.055 1.9E-06 44.3 8.7 71 173-300 6-76 (90)
23 2cqc_A Arginine/serine-rich sp 95.6 0.04 1.4E-06 45.1 7.8 71 173-290 13-83 (95)
24 3beg_B Splicing factor, argini 95.5 0.046 1.6E-06 47.4 8.2 65 173-291 14-78 (115)
25 2la4_A Nuclear and cytoplasmic 95.5 0.045 1.5E-06 45.7 7.8 64 174-290 26-89 (101)
26 2cpj_A Non-POU domain-containi 95.4 0.033 1.1E-06 46.4 7.0 74 173-301 13-86 (99)
27 2do0_A HnRNP M, heterogeneous 95.3 0.049 1.7E-06 46.3 7.8 78 173-300 13-90 (114)
28 1sjr_A Polypyrimidine tract-bi 95.3 0.05 1.7E-06 51.7 8.4 82 174-306 45-127 (164)
29 3lqv_A PRE-mRNA branch site pr 95.3 0.07 2.4E-06 45.5 8.6 68 173-290 6-73 (115)
30 1x4a_A Splicing factor, argini 95.3 0.067 2.3E-06 45.3 8.4 76 173-300 20-95 (109)
31 2dgv_A HnRNP M, heterogeneous 95.3 0.11 3.8E-06 42.3 9.4 77 173-300 6-82 (92)
32 2dnm_A SRP46 splicing factor; 95.2 0.046 1.6E-06 45.8 7.2 79 173-300 11-89 (103)
33 3tht_A Alkylated DNA repair pr 95.2 0.044 1.5E-06 57.6 8.6 83 166-301 9-96 (345)
34 2jrs_A RNA-binding protein 39; 95.2 0.065 2.2E-06 46.0 8.3 86 166-300 17-102 (108)
35 2cq1_A PTB-like protein L; RRM 95.2 0.058 2E-06 46.5 7.9 75 173-300 13-87 (101)
36 1wf1_A RNA-binding protein RAL 95.2 0.035 1.2E-06 47.3 6.4 72 174-301 26-97 (110)
37 1p27_B RNA-binding protein 8A; 95.2 0.11 3.6E-06 43.6 9.3 78 173-299 21-98 (106)
38 2cqi_A Nucleolysin TIAR; RNA r 95.2 0.091 3.1E-06 43.9 8.8 78 173-301 13-90 (103)
39 1whw_A Hypothetical protein ri 95.2 0.086 3E-06 43.6 8.6 79 173-300 6-84 (99)
40 2x1f_A MRNA 3'-END-processing 95.1 0.08 2.7E-06 43.8 8.1 78 174-300 1-78 (96)
41 2jvo_A Nucleolar protein 3; nu 95.0 0.063 2.1E-06 46.2 7.6 63 173-290 29-91 (108)
42 2cq0_A Eukaryotic translation 95.0 0.065 2.2E-06 44.8 7.4 79 173-300 13-91 (103)
43 2ad9_A Polypyrimidine tract-bi 95.0 0.072 2.4E-06 47.7 8.0 73 173-298 29-101 (119)
44 2dnz_A Probable RNA-binding pr 94.9 0.14 4.6E-06 42.0 9.1 80 173-301 3-82 (95)
45 3r27_A HnRNP L, heterogeneous 94.9 0.088 3E-06 46.0 8.2 66 173-291 19-84 (100)
46 1x5u_A Splicing factor 3B subu 94.9 0.1 3.5E-06 43.6 8.3 79 173-300 13-91 (105)
47 1nu4_A U1A RNA binding domain; 94.8 0.11 3.6E-06 42.9 8.1 76 173-300 6-85 (97)
48 3bs9_A Nucleolysin TIA-1 isofo 94.8 0.13 4.5E-06 41.3 8.5 71 174-291 5-75 (87)
49 1whx_A Hypothetical protein ri 94.8 0.072 2.5E-06 45.9 7.3 77 174-305 9-85 (111)
50 2kxn_B Transformer-2 protein h 94.7 0.12 4E-06 46.0 8.7 79 173-300 44-122 (129)
51 2cqb_A Peptidyl-prolyl CIS-tra 94.7 0.047 1.6E-06 45.5 5.8 79 173-300 10-88 (102)
52 1x4e_A RNA binding motif, sing 94.7 0.068 2.3E-06 43.0 6.5 71 173-290 3-73 (85)
53 2do4_A Squamous cell carcinoma 94.6 0.11 3.8E-06 43.2 7.7 78 173-300 15-92 (100)
54 2adc_A Polypyrimidine tract-bi 94.5 0.1 3.5E-06 49.9 8.5 75 173-300 149-224 (229)
55 1qm9_A Polypyrimidine tract-bi 94.5 0.074 2.5E-06 49.0 7.3 75 173-300 118-193 (198)
56 1x4f_A Matrin 3; structural ge 94.5 0.062 2.1E-06 47.7 6.4 72 173-296 23-94 (112)
57 2dgo_A Cytotoxic granule-assoc 94.5 0.2 6.7E-06 42.7 9.3 80 173-301 13-92 (115)
58 2i2y_A Fusion protein consists 94.5 0.15 5.1E-06 45.7 9.0 74 173-300 71-144 (150)
59 1h2v_Z 20 kDa nuclear CAP bind 94.4 0.18 6.2E-06 45.4 9.5 80 173-301 37-116 (156)
60 2cpz_A CUG triplet repeat RNA- 94.3 0.15 5.3E-06 43.5 8.3 79 173-300 23-101 (115)
61 2e5h_A Zinc finger CCHC-type a 94.3 0.16 5.3E-06 41.5 8.1 71 173-290 14-84 (94)
62 1x5t_A Splicing factor 3B subu 94.3 0.056 1.9E-06 44.4 5.3 79 173-300 3-82 (96)
63 2cph_A RNA binding motif prote 94.2 0.22 7.6E-06 41.6 8.9 81 173-301 13-94 (107)
64 1rk8_A CG8781-PA, CG8781-PA pr 94.2 0.18 6E-06 46.2 9.0 72 173-291 70-141 (165)
65 1x5s_A Cold-inducible RNA-bind 94.2 0.15 5E-06 42.5 7.7 72 173-291 10-81 (102)
66 1x4d_A Matrin 3; structural ge 94.2 0.088 3E-06 45.7 6.5 72 173-296 13-84 (102)
67 3md1_A Nuclear and cytoplasmic 94.2 0.21 7.3E-06 39.7 8.4 76 175-299 1-76 (83)
68 2dnh_A Bruno-like 5, RNA bindi 94.2 0.16 5.3E-06 42.5 7.9 80 173-300 13-93 (105)
69 2hvz_A Splicing factor, argini 94.2 0.082 2.8E-06 44.0 6.1 72 176-301 1-72 (101)
70 2dhg_A TRNA selenocysteine ass 94.1 0.22 7.5E-06 41.5 8.6 71 173-291 7-79 (104)
71 2khc_A Testis-specific RNP-typ 94.0 0.15 5.3E-06 43.5 7.6 72 173-291 38-109 (118)
72 3ex7_B RNA-binding protein 8A; 93.9 0.22 7.5E-06 43.1 8.5 78 173-299 20-97 (126)
73 1x4h_A RNA-binding protein 28; 93.9 0.23 7.8E-06 41.8 8.4 79 173-300 13-97 (111)
74 3mdf_A Peptidyl-prolyl CIS-tra 93.8 0.17 5.7E-06 40.5 7.1 71 173-290 5-75 (85)
75 2div_A TRNA selenocysteine ass 93.8 0.19 6.5E-06 41.5 7.6 73 173-292 7-80 (99)
76 1oo0_B CG8781-PA, drosophila Y 93.8 0.24 8.1E-06 41.8 8.3 71 173-290 24-94 (110)
77 2adc_A Polypyrimidine tract-bi 93.8 0.16 5.5E-06 48.6 8.2 76 173-301 32-107 (229)
78 3tyt_A Heterogeneous nuclear r 93.7 0.16 5.3E-06 48.6 7.9 74 174-300 3-76 (205)
79 1sjq_A Polypyrimidine tract-bi 93.7 0.25 8.6E-06 43.4 8.5 65 173-290 14-80 (105)
80 1p1t_A Cleavage stimulation fa 93.7 0.097 3.3E-06 43.6 5.7 72 172-290 5-76 (104)
81 1wi8_A EIF-4B, eukaryotic tran 93.7 0.13 4.5E-06 43.1 6.5 78 173-300 13-90 (104)
82 3pgw_A U1-A; protein-RNA compl 93.6 0.18 6.1E-06 49.2 8.3 74 173-299 205-278 (282)
83 3s8s_A Histone-lysine N-methyl 93.6 0.19 6.6E-06 43.5 7.6 80 173-301 4-83 (110)
84 2dgx_A KIAA0430 protein; RRM d 93.6 0.18 6.1E-06 42.0 7.1 74 174-299 8-85 (96)
85 2e5g_A U6 snRNA-specific termi 93.5 0.23 8E-06 40.9 7.7 67 173-292 6-72 (94)
86 1fxl_A Paraneoplastic encephal 93.5 0.36 1.2E-05 42.4 9.3 79 174-299 87-165 (167)
87 2cqd_A RNA-binding region cont 93.5 0.3 1E-05 41.7 8.6 78 173-300 15-92 (116)
88 3pgw_S U1-70K; protein-RNA com 93.5 0.15 5.2E-06 54.6 8.2 76 173-295 100-175 (437)
89 2dgp_A Bruno-like 4, RNA bindi 93.5 0.22 7.4E-06 41.7 7.5 81 173-300 11-92 (106)
90 1x5o_A RNA binding motif, sing 93.4 0.32 1.1E-05 41.3 8.6 71 173-291 23-93 (114)
91 2nlw_A Eukaryotic translation 93.3 0.18 6E-06 42.8 6.8 79 172-301 12-97 (105)
92 4f25_A Polyadenylate-binding p 93.2 0.19 6.6E-06 43.3 6.9 68 175-291 5-72 (115)
93 2kt5_A RNA and export factor-b 93.1 0.26 9E-06 42.6 7.8 81 173-303 33-113 (124)
94 2dng_A Eukaryotic translation 93.1 0.36 1.2E-05 40.3 8.2 77 173-300 13-89 (103)
95 2dgs_A DAZ-associated protein 93.0 0.52 1.8E-05 38.9 9.1 78 173-300 8-85 (99)
96 4fxv_A ELAV-like protein 1; RN 93.0 0.35 1.2E-05 40.9 8.2 70 175-291 19-88 (99)
97 2la6_A RNA-binding protein FUS 93.0 0.52 1.8E-05 39.0 9.1 71 173-290 11-89 (99)
98 2ku7_A MLL1 PHD3-CYP33 RRM chi 92.9 0.41 1.4E-05 41.7 8.7 71 173-290 61-131 (140)
99 1u6f_A Tcubp1, RNA-binding pro 92.8 0.33 1.1E-05 42.6 8.0 79 173-300 40-118 (139)
100 2cpe_A RNA-binding protein EWS 92.7 0.18 6.3E-06 42.7 5.9 79 173-300 13-99 (113)
101 2err_A Ataxin-2-binding protei 92.4 0.25 8.5E-06 42.2 6.5 69 173-290 27-95 (109)
102 4a8x_A RNA-binding protein wit 92.3 0.27 9.2E-06 39.4 6.2 72 174-291 3-74 (88)
103 2dh8_A DAZ-associated protein 92.3 0.32 1.1E-05 40.7 6.9 78 173-300 14-91 (105)
104 2jwn_A Embryonic polyadenylate 92.3 0.36 1.2E-05 41.6 7.4 77 174-300 35-111 (124)
105 2j76_E EIF-4B, EIF4B, eukaryot 92.3 0.18 6.2E-06 42.2 5.3 71 173-291 17-87 (100)
106 1qm9_A Polypyrimidine tract-bi 92.3 0.18 6.1E-06 46.4 5.8 74 175-301 3-76 (198)
107 1x5p_A Negative elongation fac 92.3 0.56 1.9E-05 38.8 8.3 71 173-300 13-83 (97)
108 2jvr_A Nucleolar protein 3; RN 92.2 0.22 7.6E-06 43.6 6.0 68 174-292 27-95 (111)
109 3nmr_A Cugbp ELAV-like family 92.1 0.4 1.4E-05 42.5 7.8 80 173-300 93-173 (175)
110 2g4b_A Splicing factor U2AF 65 92.1 0.28 9.7E-06 43.6 6.7 67 174-290 3-76 (172)
111 1b7f_A Protein (SXL-lethal pro 92.1 0.61 2.1E-05 41.1 8.8 79 174-301 2-80 (168)
112 1b7f_A Protein (SXL-lethal pro 92.1 0.68 2.3E-05 40.8 9.2 81 173-300 87-167 (168)
113 3ucg_A Polyadenylate-binding p 92.1 0.5 1.7E-05 38.0 7.6 70 174-291 5-74 (89)
114 2cqh_A IGF-II mRNA-binding pro 92.1 0.27 9.4E-06 40.2 6.1 73 173-300 6-79 (93)
115 2cpx_A Hypothetical protein FL 92.0 0.53 1.8E-05 39.9 8.0 79 173-300 23-101 (115)
116 3md3_A Nuclear and cytoplasmic 91.9 0.73 2.5E-05 40.3 9.1 71 173-290 85-155 (166)
117 2dit_A HIV TAT specific factor 91.8 0.8 2.7E-05 39.2 9.0 82 173-307 13-105 (112)
118 1wg1_A KIAA1579 protein, homol 91.6 0.49 1.7E-05 38.5 7.1 78 174-307 4-81 (88)
119 2a3j_A U1 small nuclear ribonu 91.5 0.76 2.6E-05 41.1 8.8 68 173-290 27-98 (127)
120 2cq4_A RNA binding motif prote 91.4 0.37 1.3E-05 41.0 6.4 70 173-290 23-92 (114)
121 2lea_A Serine/arginine-rich sp 91.4 0.31 1.1E-05 43.5 6.1 79 173-300 45-123 (135)
122 2dis_A Unnamed protein product 91.4 0.53 1.8E-05 39.5 7.3 80 173-300 6-88 (109)
123 2yh0_A Splicing factor U2AF 65 91.4 0.24 8.2E-06 45.1 5.5 76 173-300 2-84 (198)
124 2qfj_A FBP-interacting repress 91.2 0.88 3E-05 41.9 9.2 79 173-300 123-201 (216)
125 2dgw_A Probable RNA-binding pr 91.1 0.46 1.6E-05 38.7 6.4 69 173-291 8-76 (91)
126 2f3j_A RNA and export factor b 91.0 0.64 2.2E-05 43.5 8.1 81 173-303 86-166 (177)
127 3smz_A Protein raver-1, ribonu 90.7 0.25 8.6E-06 48.1 5.3 80 173-301 182-261 (284)
128 2g4b_A Splicing factor U2AF 65 90.7 0.65 2.2E-05 41.2 7.6 70 174-290 93-162 (172)
129 1wf0_A TDP-43, TAR DNA-binding 90.6 0.39 1.3E-05 38.9 5.6 72 173-300 3-74 (88)
130 1s79_A Lupus LA protein; RRM, 90.4 0.83 2.8E-05 39.1 7.7 69 174-291 10-78 (103)
131 2fc9_A NCL protein; structure 90.4 0.39 1.3E-05 39.8 5.5 75 173-300 13-87 (101)
132 2cqg_A TDP-43, TAR DNA-binding 90.1 1.5 5.1E-05 36.4 8.9 79 172-301 12-90 (103)
133 2qfj_A FBP-interacting repress 90.1 0.86 2.9E-05 42.0 8.1 72 173-291 26-97 (216)
134 3nmr_A Cugbp ELAV-like family 90.0 0.61 2.1E-05 41.3 6.7 71 174-289 2-72 (175)
135 4f02_A Polyadenylate-binding p 90.0 0.62 2.1E-05 43.9 7.1 69 174-291 102-170 (213)
136 2bz2_A Negative elongation fac 89.9 0.72 2.5E-05 40.5 7.1 71 173-300 37-107 (121)
137 1fxl_A Paraneoplastic encephal 89.9 1.3 4.3E-05 38.8 8.7 79 174-301 1-79 (167)
138 2wbr_A GW182, gawky, LD47780P; 89.9 1.2 4.2E-05 38.3 8.2 69 173-294 5-73 (89)
139 2yh0_A Splicing factor U2AF 65 89.9 0.96 3.3E-05 41.1 8.1 79 173-300 112-190 (198)
140 3tyt_A Heterogeneous nuclear r 89.9 0.54 1.8E-05 44.9 6.7 73 173-294 121-195 (205)
141 2cpi_A CCR4-NOT transcription 89.8 0.58 2E-05 39.9 6.2 81 174-300 14-97 (111)
142 2ghp_A U4/U6 snRNA-associated 89.8 0.47 1.6E-05 46.4 6.4 80 173-300 208-287 (292)
143 2krb_A Eukaryotic translation 89.6 0.76 2.6E-05 36.7 6.4 69 175-291 1-74 (81)
144 2xs2_A Deleted in azoospermia- 89.5 0.32 1.1E-05 40.5 4.2 63 172-282 6-68 (102)
145 3pgw_A U1-A; protein-RNA compl 89.4 1.1 3.8E-05 43.5 8.7 77 173-301 7-87 (282)
146 3sde_A Paraspeckle component 1 88.7 0.82 2.8E-05 44.5 7.2 74 173-301 20-93 (261)
147 2e5j_A Methenyltetrahydrofolat 88.5 1.1 3.6E-05 37.1 6.8 67 173-291 17-83 (97)
148 2ki2_A SS-DNA binding protein 88.5 0.6 2.1E-05 37.8 5.1 75 176-300 2-76 (90)
149 3md3_A Nuclear and cytoplasmic 88.5 1.5 5.1E-05 38.3 8.1 76 176-301 1-76 (166)
150 3u1l_A PRE-mRNA-splicing facto 88.4 1.2 3.9E-05 44.6 8.0 65 173-289 132-204 (240)
151 2cpy_A RNA-binding protein 12; 88.2 0.5 1.7E-05 40.5 4.6 70 173-291 13-83 (114)
152 2e44_A Insulin-like growth fac 87.9 3.4 0.00011 33.6 9.4 78 173-303 13-91 (96)
153 3s7r_A Heterogeneous nuclear r 87.8 2.6 9E-05 33.7 8.5 69 173-289 9-77 (87)
154 2lmi_A GRSF-1, G-rich sequence 87.5 0.81 2.8E-05 38.8 5.5 72 173-290 9-80 (107)
155 3n9u_C Cleavage and polyadenyl 87.2 2.2 7.4E-05 39.2 8.6 77 174-299 54-132 (156)
156 1l3k_A Heterogeneous nuclear r 87.2 2.5 8.5E-05 38.2 9.0 70 173-290 11-80 (196)
157 2ghp_A U4/U6 snRNA-associated 87.1 1.5 5E-05 42.9 7.9 70 172-291 38-107 (292)
158 2cqp_A RNA-binding protein 12; 86.9 0.73 2.5E-05 37.9 4.7 79 173-300 13-91 (98)
159 2mss_A Protein (musashi1); RNA 86.7 1.2 4E-05 34.8 5.6 66 177-290 1-66 (75)
160 3egn_A RNA-binding protein 40; 86.7 1.9 6.5E-05 38.1 7.7 79 173-299 43-125 (143)
161 2lcw_A RNA-binding protein FUS 86.3 0.14 4.8E-06 43.9 0.0 79 173-300 5-91 (116)
162 3q2s_C Cleavage and polyadenyl 86.2 1.9 6.3E-05 42.0 8.0 71 174-291 67-139 (229)
163 3ns6_A Eukaryotic translation 86.1 0.91 3.1E-05 38.0 5.0 72 174-291 5-81 (100)
164 2db1_A Heterogeneous nuclear r 86.0 0.86 2.9E-05 39.5 5.0 73 173-291 15-87 (118)
165 2kn4_A Immunoglobulin G-bindin 85.9 2.4 8.2E-05 37.8 8.0 79 173-300 68-146 (158)
166 3d2w_A TAR DNA-binding protein 85.9 1.9 6.7E-05 35.4 6.9 71 173-299 9-79 (89)
167 2dnl_A Cytoplasmic polyadenyla 85.7 1.8 6.1E-05 37.0 6.8 74 173-291 6-82 (114)
168 3smz_A Protein raver-1, ribonu 85.7 1.8 6E-05 42.1 7.6 72 173-300 20-91 (284)
169 1fje_B Nucleolin RBD12, protei 85.7 1.3 4.6E-05 39.5 6.2 75 173-301 97-171 (175)
170 1x4b_A Heterogeneous nuclear r 85.1 1.9 6.6E-05 36.6 6.7 71 173-291 25-95 (116)
171 1l3k_A Heterogeneous nuclear r 85.1 3.4 0.00012 37.3 8.7 78 173-300 102-179 (196)
172 1fjc_A Nucleolin RBD2, protein 84.9 1.2 4.2E-05 36.3 5.2 74 173-300 14-87 (96)
173 2fc8_A NCL protein; structure 84.7 2.8 9.6E-05 34.5 7.3 76 173-300 13-88 (102)
174 2rs2_A Musashi-1, RNA-binding 84.6 3.1 0.00011 35.3 7.8 77 173-299 23-99 (109)
175 1wg5_A Heterogeneous nuclear r 84.1 1.9 6.5E-05 36.2 6.1 70 173-291 13-83 (104)
176 2dha_A FLJ20171 protein; RRM d 83.9 0.97 3.3E-05 40.2 4.4 73 173-290 21-93 (123)
177 4f02_A Polyadenylate-binding p 83.0 3.5 0.00012 38.7 8.2 72 173-291 13-84 (213)
178 2ek1_A RNA-binding protein 12; 82.1 1.5 5E-05 35.7 4.5 71 174-291 14-84 (95)
179 3v4m_A Splicing factor U2AF 65 81.2 5.5 0.00019 34.1 8.0 85 172-302 2-95 (105)
180 3p5t_L Cleavage and polyadenyl 80.2 3.4 0.00012 33.5 6.1 68 177-291 3-72 (90)
181 2m2b_A RNA-binding protein 10; 80.0 1.7 6E-05 38.0 4.5 79 172-300 20-104 (131)
182 3sde_A Paraspeckle component 1 79.7 2.5 8.7E-05 41.0 6.0 69 174-290 95-163 (261)
183 1uaw_A Mouse-musashi-1; RNP-ty 79.6 3.3 0.00011 32.1 5.6 66 176-289 1-66 (77)
184 2dnn_A RNA-binding protein 12; 78.2 2.7 9.4E-05 36.4 5.1 68 174-291 15-82 (109)
185 2pe8_A Splicing factor 45; RRM 77.3 9.5 0.00032 32.7 8.3 82 173-301 6-91 (105)
186 2cjk_A Nuclear polyadenylated 76.0 5.2 0.00018 35.1 6.4 77 174-300 86-162 (167)
187 1wel_A RNA-binding protein 12; 74.9 1.8 6.2E-05 37.4 3.1 70 173-291 23-93 (124)
188 2hgl_A HNRPF protein, heteroge 74.3 2.8 9.7E-05 37.8 4.3 73 173-291 42-114 (136)
189 1iqt_A AUF1, heterogeneous nuc 73.6 3.5 0.00012 31.9 4.2 66 177-290 1-66 (75)
190 2lxi_A RNA-binding protein 10; 72.7 4.1 0.00014 33.5 4.6 70 175-290 1-71 (91)
191 3ue2_A Poly(U)-binding-splicin 69.6 12 0.00039 33.0 7.1 86 174-303 19-108 (118)
192 2cjk_A Nuclear polyadenylated 69.6 9.8 0.00034 33.3 6.7 63 174-283 2-64 (167)
193 2voo_A Lupus LA protein; RNA-b 69.1 8.7 0.0003 36.2 6.6 64 174-285 108-171 (193)
194 1wez_A HnRNP H', FTP-3, hetero 66.2 5.9 0.0002 33.4 4.3 69 173-291 13-81 (102)
195 2hgm_A HNRPF protein, heteroge 62.1 11 0.00037 33.7 5.4 68 174-290 41-109 (126)
196 2d9o_A DNAJ (HSP40) homolog, s 62.1 22 0.00075 30.3 7.2 59 187-300 28-86 (100)
197 2hgn_A Heterogeneous nuclear r 57.7 5.8 0.0002 35.9 2.9 68 174-291 45-112 (139)
198 1fje_B Nucleolin RBD12, protei 56.1 15 0.0005 32.6 5.2 77 173-301 11-88 (175)
199 1jmt_A Splicing factor U2AF 35 53.1 10 0.00035 32.2 3.5 35 266-302 70-104 (104)
200 1fj7_A Nucleolin RBD1, protein 47.8 16 0.00053 29.9 3.8 77 173-300 15-91 (101)
201 2l9w_A U4/U6 snRNA-associated- 41.2 16 0.00055 33.1 2.9 25 266-290 64-88 (117)
202 2diu_A KIAA0430 protein; struc 35.5 26 0.00088 30.6 3.3 70 174-296 7-78 (96)
203 2lkz_A RNA-binding protein 5; 28.3 25 0.00085 29.4 1.9 71 173-288 7-77 (95)
204 3s6e_A RNA-binding protein 39; 22.5 48 0.0016 28.9 2.7 36 266-303 57-92 (114)
205 1uth_A LYSR-type regulatory pr 21.8 19 0.00066 34.8 0.0 25 254-278 11-35 (315)
No 1
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.011 Score=49.26 Aligned_cols=72 Identities=21% Similarity=0.292 Sum_probs=60.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.++++|=|-||.|.++...||..+|+.| |.|.+|.|- .
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~--------------~------------------------ 45 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIK--------------N------------------------ 45 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTT----CCCCEEEEE--------------T------------------------
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEe--------------C------------------------
Confidence 4789999999999899999999999988 789999881 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
=||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 46 ------------g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~ 79 (96)
T 2kvi_A 46 ------------AFGFIQFDNPQSVRDAIECESQEMNF--GKKLILEV 79 (96)
T ss_dssp ------------TEEEEEESCHHHHHHHHHHHTCSSCB--TTTBCEEE
T ss_pred ------------CEEEEEECCHHHHHHHHHHcCCCeeC--CcEEEEEE
Confidence 28999999999999999999999886 44554444
No 2
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.33 E-value=0.019 Score=47.86 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=61.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|+ +...+|..+|+.|-| |.|.+|.|- .
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~g~--g~v~~~~~~-----------------~--------------------- 51 (99)
T 2cpd_A 13 SSVKILYVRNLMLS-TSEEMIEKEFNNIKP--GAVERVKKI-----------------R--------------------- 51 (99)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHHHTTST--TCEEEEEEC-----------------S---------------------
T ss_pred CCcCEEEEeCCCCC-CCHHHHHHHHHhcCC--cceEEEEEe-----------------C---------------------
Confidence 47899999999997 999999999999987 899998752 1
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
=||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 52 ------------g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~ 85 (99)
T 2cpd_A 52 ------------DYAFVHFSNREDAVEAMKALNGKVLD--GSPIEVTL 85 (99)
T ss_dssp ------------SEEEEEESSHHHHHHHHHHHSSEEET--TEEEEEEC
T ss_pred ------------CeEEEEeCCHHHHHHHHHHhCCCEeC--CcEEEEEE
Confidence 18999999999999999999999886 44444443
No 3
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.32 E-value=0.021 Score=46.04 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=57.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|.++ .
T Consensus 10 ~~~~~l~V~~l~~~-~t~~~l~~~f~~~----G~i~~~~~~~~------------k------------------------ 48 (85)
T 2ytc_A 10 KTITTLYVGGLGDT-ITETDLRNHFYQF----GEIRTITVVQR------------Q------------------------ 48 (85)
T ss_dssp SSCCCEEEECCTTT-SCHHHHHHHHHTT----SCEEEEEEEGG------------G------------------------
T ss_pred CCccEEEEcCCCCC-CCHHHHHHHHHhC----CCEeEEEEECC------------C------------------------
Confidence 57889999999996 9999999999977 78999999852 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhc-Ccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRAC-DGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ec-DG~E~E~ 291 (610)
=||.|+|.+.+.|......+ +|..+.-
T Consensus 49 ------------g~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 49 ------------QCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp ------------TEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred ------------CEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 18999999999999999999 9987763
No 4
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=96.28 E-value=0.015 Score=49.01 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=57.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|.++.-.||..+|+.| |.|.+|.|- .
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~----G~v~~v~i~--------------~------------------------ 57 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIK--------------N------------------------ 57 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGG----SCEEEEEEC--------------S------------------------
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEe--------------C------------------------
Confidence 4789999999999999999999999988 789999980 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
-||.|+|.+.+.|......++|..+.
T Consensus 58 ------------g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 58 ------------AFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp ------------SEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred ------------CEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 28999999999999999999998875
No 5
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.10 E-value=0.025 Score=47.03 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=61.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.++++|-|.||.|+ +...||..+|+.| |.|.+|.|-+. .
T Consensus 15 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~v~~v~~~~~---------------~--------------------- 53 (97)
T 1why_A 15 NPTTRLWVGGLGPN-TSLAALAREFDRF----GSIRTIDHVKG---------------D--------------------- 53 (97)
T ss_dssp CCCSCEEEECCCSS-CCHHHHHHHHHTT----SCEEEEEECSS---------------S---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEeCC---------------C---------------------
Confidence 47899999999997 9999999999977 68999977531 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
=||.|+|.+.+.|......++|..+.-.+..|-++|
T Consensus 54 ------------g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 54 ------------SFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp ------------CCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred ------------CEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 189999999999999999999998864345555444
No 6
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.08 E-value=0.014 Score=52.21 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=57.6
Q ss_pred CCCCCCCCceeEEec--cCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCC
Q 007265 168 IPEIDNETHRLAIVN--MDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDED 245 (610)
Q Consensus 168 ~p~~~~~T~RlAvvN--~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~ 245 (610)
+.....+|++|-|+| |.|+ +.-.+|-.+|+.| |.|.+|.|.++ .
T Consensus 18 ~~~~~~pt~~L~V~Ng~L~~~-~te~~L~~~F~~f----G~v~~v~i~~~--------------r--------------- 63 (114)
T 2cq2_A 18 IETVSYATQSLVVANGGLGNG-VSRNQLLPVLEKC----GLVDALLMPPN--------------K--------------- 63 (114)
T ss_dssp CCCCSSCCSEEEEETCTGGGT-CCHHHHHHHHHHH----SCEEEEECCTT--------------C---------------
T ss_pred CcCCCCCCCEEEEECCCCCCC-CCHHHHHHHHHhc----CCeEEEEEeCC--------------C---------------
Confidence 344456899999966 9994 7889999999988 78999887431 0
Q ss_pred chhhhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccc
Q 007265 246 NDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEF 289 (610)
Q Consensus 246 ~e~~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~ 289 (610)
=||.|+|.+.+.|...+++++|.++
T Consensus 64 -------------------gfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 64 -------------------PYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp -------------------SCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred -------------------CEEEEEECCHHHHHHHHHHhCCCEE
Confidence 1899999999999999999999998
No 7
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.06 E-value=0.021 Score=47.07 Aligned_cols=72 Identities=17% Similarity=0.352 Sum_probs=60.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|. . +
T Consensus 8 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~v~~v~~~-----------------~--------------~------ 45 (92)
T 2dgt_A 8 KASTKLHVGNISPT-CTNQELRAKFEEY----GPVIECDIV-----------------K--------------D------ 45 (92)
T ss_dssp CSSEEEEEESCCSS-CCHHHHHHHHHTT----SCCCEEEEC-----------------S--------------S------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEE-----------------C--------------C------
Confidence 47899999999997 7999999999987 678888874 0 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
||.|+|.+.+.|......++|..+. +..|-+++-
T Consensus 46 -------------~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a 79 (92)
T 2dgt_A 46 -------------YAFVHMERAEDAVEAIRGLDNTEFQ--GKRMHVQLS 79 (92)
T ss_dssp -------------EEEEEESCHHHHHHHHHHHTTEEET--TEEEEEEES
T ss_pred -------------EEEEEECCHHHHHHHHHHhCCCeeC--CcEEEEEEc
Confidence 8999999999999999999999886 455555543
No 8
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.00 E-value=0.024 Score=48.23 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=62.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
...++|=|.||.| ++...+|..+|+.| |.|.+|.|.+. .
T Consensus 23 ~~~~~l~V~nl~~-~~t~~~l~~~F~~~----G~i~~v~i~~~------------~------------------------ 61 (109)
T 1x4g_A 23 PKNCTVYCGGIAS-GLTDQLMRQTFSPF----GQIMEIRVFPE------------K------------------------ 61 (109)
T ss_dssp SSCCEEEEECCSS-CCCHHHHHHHHHHH----SCEEEEEEETT------------T------------------------
T ss_pred CCCcEEEEeCCCC-CCCHHHHHHHHHhc----CCeEEEEEeCC------------C------------------------
Confidence 3678999999999 68999999999987 68999999763 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
=||.|+|.+.+.|......++|..+. +..|-++|-
T Consensus 62 ------------g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a 96 (109)
T 1x4g_A 62 ------------GYSFVRFSTHESAAHAIVSVNGTTIE--GHVVKCYWG 96 (109)
T ss_dssp ------------TEEEEEESSHHHHHHHHHHHTTCEET--TEECEEECC
T ss_pred ------------CEEEEEECCHHHHHHHHHHcCCCEEC--CcEEEEEec
Confidence 28999999999999999999998876 455555554
No 9
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=95.99 E-value=0.021 Score=48.06 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=60.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|-||.|+ +...||..+|+.| |.|.+|.|. . +
T Consensus 9 ~~~~~l~V~nl~~~-~t~~~l~~~F~~~----G~i~~v~~~-----------------~--------------~------ 46 (103)
T 2dgu_A 9 AKVKVLFVRNLANT-VTEEILEKAFSQF----GKLERVKKL-----------------K--------------D------ 46 (103)
T ss_dssp CCCCCEEEECCCTT-CCHHHHHHHHHHH----SCEEEEEEC-----------------S--------------S------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEE-----------------C--------------C------
Confidence 46899999999996 9999999999988 689998874 0 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
||.|+|.+.+.|......++|..+. +..|-++|-
T Consensus 47 -------------~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a 80 (103)
T 2dgu_A 47 -------------YAFIHFDERDGAVKAMEEMNGKDLE--GENIEIVFA 80 (103)
T ss_dssp -------------CEEEEESSHHHHHHHHHHHTTEEET--TEEEEEEEC
T ss_pred -------------EEEEEeCCHHHHHHHHHHHCCCccC--CCEEEEEEc
Confidence 8999999999999999999999876 455555554
No 10
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=95.94 E-value=0.015 Score=46.96 Aligned_cols=69 Identities=17% Similarity=0.337 Sum_probs=57.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccC-------CCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCC
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLP-------KDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDED 245 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P-------~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~ 245 (610)
..+++|=|-||.| ++...||..+|+.|.. +++.|.+|.|..+ .
T Consensus 4 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------------k----------------- 53 (87)
T 2hzc_A 4 GSARRLYVGNIPF-GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------------K----------------- 53 (87)
T ss_dssp GGGGEEEEESCCT-TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------------S-----------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------------C-----------------
Confidence 3689999999999 5799999999999843 3348999988643 0
Q ss_pred chhhhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 246 NDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 246 ~e~~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
=||.|+|.+.+.|.... .++|..+.-
T Consensus 54 -------------------g~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 54 -------------------NFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp -------------------SEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred -------------------cEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 28999999999999999 999998753
No 11
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=95.89 E-value=0.022 Score=52.03 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=63.9
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.--||-|-||.|. |+-.+|..+|+.| |.|.+|.|+.-
T Consensus 27 ~VL~I~V~NL~~~-vte~~L~~lFs~y----G~V~~V~i~~~-------------------------------------- 63 (130)
T 3zzy_A 27 PVLRIIVENLFYP-VTLDVLHQIFSKF----GTVLKIITFTK-------------------------------------- 63 (130)
T ss_dssp SEEEEEEESCCSC-CCHHHHHHHHTTS----SCEEEEEEEEE--------------------------------------
T ss_pred ceEEEEECCCCCC-CCHHHHHHHHhCc----CCEEEEEEEcC--------------------------------------
Confidence 3456669999986 9999999999977 89999999741
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
.|=|+|-|+|.+++.|..-.+.+||.++.-.++.|.+-|-
T Consensus 64 --------~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 64 --------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp --------TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred --------CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 0237799999999999999999999999876667777665
No 12
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.86 E-value=0.049 Score=45.59 Aligned_cols=77 Identities=29% Similarity=0.455 Sum_probs=61.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.|+ +...+|..+|+.| |.|.+|.|.... .++
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~-----------~~~---------------------- 54 (103)
T 2cq3_A 13 STPKRLHVSNIPFR-FRDPDLRQMFGQF----GKILDVEIIFNE-----------RGS---------------------- 54 (103)
T ss_dssp CCCCEEEEESCCTT-CCHHHHHHHGGGT----SCEEEEEEECCT-----------TTT----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecC-----------CCC----------------------
Confidence 47899999999996 9999999999987 789999997642 011
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
--||.|+|.+.+.|......++|..+.- ..|-+++
T Consensus 55 -----------~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~ 89 (103)
T 2cq3_A 55 -----------KGFGFVTFENSADADRAREKLHGTVVEG--RKIEVNN 89 (103)
T ss_dssp -----------CCEEEEEESCHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred -----------cEEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEE
Confidence 1389999999999999999999998753 4444443
No 13
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.80 E-value=0.028 Score=50.67 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=60.9
Q ss_pred CceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHHH
Q 007265 175 THRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKL 254 (610)
Q Consensus 175 T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~L 254 (610)
+-+|-|-||.|. |+-.+|..+|+-| |.|.+|.|+.- .|
T Consensus 25 vl~l~V~NL~~~-vt~~~L~~~Fs~y----G~V~~v~i~~~------------~G------------------------- 62 (124)
T 2e5i_A 25 VLLLSIQNPLYP-ITVDVLYTVCNPV----GKVQRIVIFKR------------NG------------------------- 62 (124)
T ss_dssp EEEEEEESCCSC-CCHHHHHHHHTTT----SCEEEEEEEES------------SS-------------------------
T ss_pred EEEEEEcCcCCC-CCHHHHHHHHHhc----CCEEEEEEEeC------------CC-------------------------
Confidence 445668999996 8999999999987 89999999641 02
Q ss_pred HHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 255 RAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 255 R~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
|||.|+|.+++.|..-...++|.++.--++.|.+-|-
T Consensus 63 ----------f~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 63 ----------IQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp ----------EEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred ----------CEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4799999999999999999999999765555655543
No 14
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.77 E-value=0.051 Score=46.29 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=57.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
...++|=|-||.|+ +...||..+|+.| |.|..|.|...
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~~~i~~~------------------------------------- 50 (108)
T 1x4c_A 13 RSENRVVVSGLPPS-GSWQDLKDHMREA----GDVCYADVYRD------------------------------------- 50 (108)
T ss_dssp SCCCEEEEESCCSS-CCHHHHHHHHGGG----SCEEEEEEETT-------------------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEeEEEEecC-------------------------------------
Confidence 46789999999986 8999999999987 68999998642
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
-||.|+|.+.+.|......++|.++.-
T Consensus 51 ------------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 51 ------------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp ------------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred ------------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 389999999999999999999999864
No 15
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=95.74 E-value=0.038 Score=45.35 Aligned_cols=71 Identities=14% Similarity=0.238 Sum_probs=59.3
Q ss_pred CCCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 172 DNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 172 ~~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
...+++|=|.||.|+ +...||..+|+.| |.|.+|.|.+..- |.+
T Consensus 13 ~~~~~~l~v~nlp~~-~~~~~l~~~F~~~----G~i~~v~i~~~~~-----------g~~-------------------- 56 (95)
T 2ywk_A 13 EEADRTVFVGNLEAR-VREEILYELFLQA----GPLTKVTICKDRE-----------GKP-------------------- 56 (95)
T ss_dssp TTGGGEEEEECCCTT-CCHHHHHHHHGGG----SCEEEEEEEECTT-----------SCE--------------------
T ss_pred CCCCCEEEEECCCCC-CCHHHHHHHHHhc----CCEEEEEEEECCC-----------CCC--------------------
Confidence 357899999999996 8999999999988 7899999875411 111
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
--||.|+|.+.+.|......++|..+.
T Consensus 57 ------------~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (95)
T 2ywk_A 57 ------------KSFGFVCFKHPESVSYAIALLNGIRLY 83 (95)
T ss_dssp ------------EEEEEEEESSTHHHHHHHHHHTTCEET
T ss_pred ------------ceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 248999999999999999999999876
No 16
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.71 E-value=0.031 Score=46.29 Aligned_cols=82 Identities=21% Similarity=0.298 Sum_probs=62.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|+ +...+|..+|+.| |.|.+|.|....- ..|
T Consensus 3 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~---------~~g----------------------- 45 (98)
T 2cpf_A 3 SGSSGLFIKNLNFS-TTEETLKGVFSKV----GAIKSCTISKKKN---------KAG----------------------- 45 (98)
T ss_dssp CCCCCEEEESCCTT-CCHHHHHHHHHTT----SCEEEEEEEEEEC---------TTC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC---------CCC-----------------------
Confidence 47899999999997 9999999999977 6899998864221 000
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
....--||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 46 -------t~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~ 84 (98)
T 2cpf_A 46 -------VLLSMGFGFVEYKKPEQAQKALKQLQGHTVD--GHKLEVRI 84 (98)
T ss_dssp -------CEEEEEEEEEEESSHHHHHHHHHHSTTCEET--TEECEEEC
T ss_pred -------CcCcccEEEEEECCHHHHHHHHHHhCCCeeC--CeEEEEEE
Confidence 0011358999999999999999999999876 44555544
No 17
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=95.70 E-value=0.03 Score=48.70 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=62.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
+.+++|=|.||.|+ +...||..+|+.| |.|.+|.|....-|+
T Consensus 5 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~g~--------------------------------- 46 (116)
T 2fy1_A 5 DHPGKLFIGGLNRE-TNEKMLKAVFGKH----GPISEVLLIKDRTSK--------------------------------- 46 (116)
T ss_dssp CSCCEEEEECCTTT-CCHHHHHHHHHTS----SCCSEEEEECSTTTT---------------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEECCCCC---------------------------------
Confidence 57889999999996 9999999999988 679999987532110
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
---||.|+|.+.+.|......++|..+.- ..|-+++
T Consensus 47 ----------~~g~afV~F~~~~~A~~Ai~~l~g~~~~g--~~l~V~~ 82 (116)
T 2fy1_A 47 ----------SRGFAFITFENPADAKNAAKDMNGKSLHG--KAIKVEQ 82 (116)
T ss_dssp ----------CCCEEEEECSSHHHHHHHHHHCSSCBCSS--SBCEEEE
T ss_pred ----------cccEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEE
Confidence 02389999999999999999999998854 4444444
No 18
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.67 E-value=0.048 Score=47.17 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=61.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.+++.|=|.||.|+ +.-.||..+|+.| |.|.+|.|-++ .
T Consensus 13 ~p~~~l~V~nLp~~-~te~~L~~~F~~f----G~V~~v~i~~~------------k------------------------ 51 (104)
T 1wex_A 13 SVSPVVHVRGLCES-VVEADLVEALEKF----GTICYVMMMPF------------K------------------------ 51 (104)
T ss_dssp CCCSEEEEESCCSS-CCHHHHHHHHTTT----SCEEEEEEETT------------T------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhC----CCEEEEEEECC------------C------------------------
Confidence 47899999999996 8999999999877 79999988652 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
=||.|+|.+.+.|......++|..+..-+..|-+.|-
T Consensus 52 ------------g~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 52 ------------RQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp ------------TEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred ------------CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 1899999999999999999888765555555555544
No 19
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=95.67 E-value=0.056 Score=45.44 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=62.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.++++|-|.||.|. +...||..+|+.| |.|.+|.|....- |..
T Consensus 27 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~-----------g~~--------------------- 69 (107)
T 3ulh_A 27 ETGGKLLVSNLDFG-VSDADIQELFAEF----GTLKKAAVHYDRS-----------GRS--------------------- 69 (107)
T ss_dssp CCSEEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEEEEECTT-----------SCE---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEECCC-----------CCc---------------------
Confidence 58899999999996 8889999999976 7899999864321 111
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
--||.|+|.+.+.|......++|..+. +..|-++|.
T Consensus 70 -----------~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a 105 (107)
T 3ulh_A 70 -----------LGTADVHFERKADALKAMKQYNGVPLD--GRPMNIQLV 105 (107)
T ss_dssp -----------EEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEE
T ss_pred -----------ceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEEEEe
Confidence 248999999999999999999999885 455555554
No 20
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.64 E-value=0.035 Score=45.47 Aligned_cols=71 Identities=17% Similarity=0.327 Sum_probs=59.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|. . +
T Consensus 7 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~v~~~~~~-----------------~--------------~------ 44 (90)
T 2dnp_A 7 GNTWKIFVGNVSAA-CTSQELRSLFERR----GRVIECDVV-----------------K--------------D------ 44 (90)
T ss_dssp CCSCCEEEESCCTT-CCHHHHHHHHHHH----SCEEEEEEC-----------------S--------------S------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHcC----CCEEEEEEE-----------------C--------------C------
Confidence 47889999999995 9999999999988 679999885 1 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 45 -------------~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 77 (90)
T 2dnp_A 45 -------------YAFVHMEKEADAKAAIAQLNGKEVK--GKRINVEL 77 (90)
T ss_dssp -------------CEEEEESCHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred -------------EEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEE
Confidence 8999999999999999999998875 34444444
No 21
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.61 E-value=0.059 Score=45.11 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=62.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.|+ +...+|..+|+.| |.|.+|.|... .|..
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~------------~g~~--------------------- 54 (103)
T 2d9p_A 13 YQVVNLYVKNLDDG-IDDERLRKAFSPF----GTITSAKVMME------------GGRS--------------------- 54 (103)
T ss_dssp SSCCCEEEECCCTT-CCHHHHHHTTTTT----SCEEEEEEEEC------------SSSE---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEcC------------CCCc---------------------
Confidence 47889999999995 8999999999876 67999998742 1211
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
--||.|+|.+.+.|......++|..+. +..|-++|-
T Consensus 55 -----------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~a 90 (103)
T 2d9p_A 55 -----------KGFGFVCFSSPEEATKAVTEMNGRIVA--TKPLYVALA 90 (103)
T ss_dssp -----------EEEEEEEESSHHHHHHHHHHHTTCBSS--SSBCEEEEC
T ss_pred -----------CEEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEEEEe
Confidence 348999999999999999999999873 455555553
No 22
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.61 E-value=0.055 Score=44.30 Aligned_cols=71 Identities=13% Similarity=0.291 Sum_probs=59.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.| ++...||..+|+.| |.|.+|.|. .
T Consensus 6 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~----G~i~~v~~~--------------~------------------------ 42 (90)
T 2dnq_A 6 SGMVKLFIGNLPR-EATEQEIRSLFEQY----GKVLECDII--------------K------------------------ 42 (90)
T ss_dssp SCCEEEEEESCCS-SCCHHHHHHHHHTS----SCEEEEEEE--------------T------------------------
T ss_pred CCCeEEEEeCCCC-CCCHHHHHHHHHhC----CCEEEEEEE--------------C------------------------
Confidence 4789999999999 58999999999987 789999985 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
=||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 43 ------------g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~ 76 (90)
T 2dnq_A 43 ------------NYGFVHIEDKTAAEDAIRNLHHYKLH--GVNINVEA 76 (90)
T ss_dssp ------------TEEEEEESSHHHHHHHHHHHTTCBCS--SCBCEEEC
T ss_pred ------------CEEEEEECCHHHHHHHHHHhcCCccC--CcEEEEEE
Confidence 18999999999999999999998875 34444443
No 23
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.56 E-value=0.04 Score=45.11 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=58.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.++++|-|.||.|+ +...+|..+|+.| |.|.+|.|....- .|.
T Consensus 13 ~~~~~l~v~nlp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~~----------~~~---------------------- 55 (95)
T 2cqc_A 13 DPNCCLGVFGLSLY-TTERDLREVFSKY----GPIADVSIVYDQQ----------SRR---------------------- 55 (95)
T ss_dssp CGGGCEEEESCCSS-CCHHHHHHHHHTT----SCEEEEEEEECSS----------SSS----------------------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhc----CCeeEEEEEEcCC----------CCC----------------------
Confidence 47899999999997 9999999999987 6899998864211 010
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
---||.|+|.+.+.|......++|..+.
T Consensus 56 ----------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 56 ----------SRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp ----------EEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ----------cccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 1248999999999999999999998875
No 24
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=95.47 E-value=0.046 Score=47.36 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=54.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
....+|=|.||.|+ +...||..+|+.| |.|..|.|...
T Consensus 14 r~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~v~~~~i~~~------------------------------------- 51 (115)
T 3beg_B 14 RSENRVVVSGLPPS-GSWQDLKDHMREA----GDVCYADVYRD------------------------------------- 51 (115)
T ss_dssp ---CCEEEEECCSS-CCTTHHHHHHGGG----SCEEEEEECTT-------------------------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEecC-------------------------------------
Confidence 35689999999985 7899999999977 78999998642
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
=||.|+|.+.+.|......++|.++.-
T Consensus 52 ------------g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 52 ------------GTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp ------------SEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred ------------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 389999999999999999999998754
No 25
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.045 Score=45.68 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=55.7
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
..++|=|.||.| +++..+|..+|+.| |.|.+|.|.++
T Consensus 26 ~~~~l~V~nlp~-~~~~~~l~~~f~~~----G~i~~~~~~~~-------------------------------------- 62 (101)
T 2la4_A 26 RVTTAYIGNIPH-FATEADLIPLFQNF----GFILDFKHYPE-------------------------------------- 62 (101)
T ss_dssp SCCEEEEESCCT-TCCHHHHHHHHHTT----SCCSEEEEETT--------------------------------------
T ss_pred CCCEEEEcCCCc-ccCHHHHHHHHHhC----CCEEEEEEecC--------------------------------------
Confidence 568999999999 78999999999988 78999988511
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
--||.|+|.+.+.|......++|..+.
T Consensus 63 ----------~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 63 ----------KGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp ----------TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred ----------CCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 138999999999999999999999886
No 26
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.45 E-value=0.033 Score=46.41 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=60.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...+|..+|+.| |.|.+|.|-++
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~~~~~------------------------------------- 50 (99)
T 2cpj_A 13 TQRSRLFVGNLPPD-ITEEEMRKLFEKY----GKAGEVFIHKD------------------------------------- 50 (99)
T ss_dssp CCTTEEEEESCCTT-CCHHHHHHHTSTT----CCCSEEEEETT-------------------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhhc----CCeEEEEEecC-------------------------------------
Confidence 36789999999996 9999999999887 67888887532
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
-=||.|+|.+.+.|......++|..+. +..|-++|-
T Consensus 51 -----------kg~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a 86 (99)
T 2cpj_A 51 -----------KGFGFIRLETRTLAEIAKVELDNMPLR--GKQLRVRFA 86 (99)
T ss_dssp -----------TTEEEEECSSSHHHHHHHHHHTTCCBT--TBCCEEEES
T ss_pred -----------CCEEEEEECCHHHHHHHHHHhCCCEeC--CceEEEEEc
Confidence 028999999999999999999999876 455665554
No 27
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.33 E-value=0.049 Score=46.29 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=62.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|....-| -
T Consensus 13 ~~~~~l~V~nlp~~-~~~~~l~~~f~~~----G~i~~~~i~~~~~g-----------~---------------------- 54 (114)
T 2do0_A 13 RLGSTVFVANLDYK-VGWKKLKEVFSMA----GVVVRADILEDKDG-----------K---------------------- 54 (114)
T ss_dssp CCCSCEEEESCCTT-CCHHHHHHHHTTT----SCEEEEEEEECTTC-----------S----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEECCCC-----------C----------------------
Confidence 47899999999996 8999999999987 78999988643111 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
---||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 55 ----------~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 90 (114)
T 2do0_A 55 ----------SRGIGTVTFEQSIEAVQAISMFNGQLLF--DRPMHVKM 90 (114)
T ss_dssp ----------EEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred ----------eeeEEEEEECCHHHHHHHHHHhCCCEeC--CCEEEEEE
Confidence 1248999999999999999999999986 45555555
No 28
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=95.30 E-value=0.05 Score=51.67 Aligned_cols=82 Identities=18% Similarity=0.302 Sum_probs=64.6
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
...+|-|-||.|. |+-.+|..+|+.| |.|.+|.|+.-. +
T Consensus 45 ~vl~l~VgNL~~~-vted~L~~~Fs~f----G~V~~V~i~~k~-------------~----------------------- 83 (164)
T 1sjr_A 45 PVLRIIVENLFYP-VTLDVLHQIFSKF----GTVLKIITFTKN-------------N----------------------- 83 (164)
T ss_dssp CEEEEEECSCCSC-CCHHHHHHHHHHH----SCEEEEEEEESS-------------S-----------------------
T ss_pred ceEEEEEeCcCCC-CCHHHHHHHHHhc----CCEEEEEEEeCC-------------C-----------------------
Confidence 3456778999996 9999999999998 899999996210 1
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc-CCCCc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI-PDTME 306 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV-PDd~~ 306 (610)
=+||.|+|.+++.|..-...++|.++.--++.|.+.|- |.+..
T Consensus 84 ----------rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l~ 127 (164)
T 1sjr_A 84 ----------QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLN 127 (164)
T ss_dssp ----------CEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSCC
T ss_pred ----------CCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCccc
Confidence 16999999999999999999999999765566666554 44333
No 29
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=95.29 E-value=0.07 Score=45.52 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=56.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.++++|-|.||.|+ +...||..+|+.| |.|.+|.|... |..
T Consensus 6 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~v~~v~i~~~-------------~~~--------------------- 46 (115)
T 3lqv_A 6 EVNRILYIRNLPYK-ITAEEMYDIFGKY----GPIRQIRVGNT-------------PET--------------------- 46 (115)
T ss_dssp TCCSEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEEEECS-------------TTT---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEeeC-------------CCC---------------------
Confidence 47899999999985 8899999999977 78999998631 100
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
-=||.|+|.+.+.|......++|..+.
T Consensus 47 -----------~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 47 -----------RGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp -----------TTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred -----------CcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 127999999999999999999999875
No 30
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.27 E-value=0.067 Score=45.32 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=60.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.| ++...||..+|+.| |.|.+|.|..+.
T Consensus 20 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~----G~v~~~~i~~~~------------------------------------ 58 (109)
T 1x4a_A 20 NNDCRIYVGNLPP-DIRTKDIEDVFYKY----GAIRDIDLKNRR------------------------------------ 58 (109)
T ss_dssp CCSSEEEEESCCT-TCCHHHHHHHHGGG----SCEEEEEECCSS------------------------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhc----CCeEEEEEEECC------------------------------------
Confidence 4789999999999 68999999999998 789999883210
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
+ ---||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 59 --------~-~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~ 95 (109)
T 1x4a_A 59 --------G-GPPFAFVEFEDPRDAEDAVYGRDGYDYD--GYRLRVEF 95 (109)
T ss_dssp --------S-SSCCEEEEESCHHHHHHHHHHHTTCEET--TEECEEEC
T ss_pred --------C-CCcEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEE
Confidence 0 1248999999999999999999998875 34444443
No 31
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=95.26 E-value=0.11 Score=42.29 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=61.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
...++|-|.||.|+ +...||..+|+.| |.|.+|.|... .|..
T Consensus 6 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~----G~v~~~~i~~~------------~g~~--------------------- 47 (92)
T 2dgv_A 6 SGACQIFVRNLPFD-FTWKMLKDKFNEC----GHVLYADIKME------------NGKS--------------------- 47 (92)
T ss_dssp SSCCEEEECSCCTT-CCHHHHHHHHHTT----SCEEEEEEEES------------SSCE---------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEcc------------CCCc---------------------
Confidence 57899999999985 8999999999987 78999998741 1211
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
-=||.|+|.+.+.|......++|..+.- ..|-+++
T Consensus 48 -----------~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~ 82 (92)
T 2dgv_A 48 -----------KGCGVVKFESPEVAERACRMMNGMKLSG--REIDVRI 82 (92)
T ss_dssp -----------EEEEEEEESSHHHHHHHHHHHTTCCBTT--BCCCCEE
T ss_pred -----------ceEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEEE
Confidence 2389999999999999999999988763 4444443
No 32
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.24 E-value=0.046 Score=45.79 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=61.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|...... |
T Consensus 11 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~----G~i~~v~i~~~~~~----------~----------------------- 52 (103)
T 2dnm_A 11 DGMITLKVDNLTYR-TSPDSLRRVFEKY----GRVGDVYIPREPHT----------K----------------------- 52 (103)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHHTTT----SCEEEEECCBCSSS----------C-----------------------
T ss_pred CCCeEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEeCCCC----------C-----------------------
Confidence 57899999999997 8999999999987 78999987542110 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
+ .--||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 53 --------~-~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~ 89 (103)
T 2dnm_A 53 --------A-PRGFAFVRFHDRRDAQDAEAAMDGAELD--GRELRVQV 89 (103)
T ss_dssp --------S-BCSCEEEEESSSSHHHHHHHHHSSCCBT--TBCCEEEE
T ss_pred --------C-CCeEEEEEECCHHHHHHHHHHcCCCEEC--CcEEEEEE
Confidence 0 1238999999999999999999998875 34444444
No 33
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=95.24 E-value=0.044 Score=57.56 Aligned_cols=83 Identities=22% Similarity=0.321 Sum_probs=65.4
Q ss_pred ccCCCCCCCCceeEEecc--CCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCC
Q 007265 166 EAIPEIDNETHRLAIVNM--DWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDD 243 (610)
Q Consensus 166 e~~p~~~~~T~RlAvvN~--DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~ 243 (610)
.+|.....+|+.|-|.|+ .|. +.-.||..+|+.| |.|.+|.|.++ ..
T Consensus 9 ~~v~~~~~ps~~l~VgN~gl~~~-~te~~L~~~F~~~----G~V~~v~~~~~--------------kg------------ 57 (345)
T 3tht_A 9 EGIETVSYATQSLVVANGGLGNG-VSRNQLLPVLEKC----GLVDALLMPPN--------------KP------------ 57 (345)
T ss_dssp TTCCCCSSCCSEEEEETCSGGGT-CCHHHHHHHHHTT----SCEEEEECCTT--------------CS------------
T ss_pred CCceecCCCCCEEEEEcCCCCCC-CCHHHHHHHHHhc----CCeEEEEEeCC--------------CC------------
Confidence 345555679999999995 565 9999999999988 89999987541 11
Q ss_pred CCchhhhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc-cccc--ccccccc
Q 007265 244 EDNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE-RSSN--KLDLRFI 301 (610)
Q Consensus 244 ~~~e~~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E-~San--~lDLRFV 301 (610)
||.|+|.+.+.|.+.+++++|.++. ..+. .|=|.||
T Consensus 58 ----------------------faFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 58 ----------------------YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 96 (345)
T ss_dssp ----------------------EEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEC
T ss_pred ----------------------EEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEe
Confidence 9999999999999999999999994 2233 3444566
No 34
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=95.24 E-value=0.065 Score=46.00 Aligned_cols=86 Identities=17% Similarity=0.255 Sum_probs=65.7
Q ss_pred ccCCCCCCCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCC
Q 007265 166 EAIPEIDNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDED 245 (610)
Q Consensus 166 e~~p~~~~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~ 245 (610)
..+|.....+++|=|.||.|+ +...+|..+|+.| |.|.+|.|..... .|
T Consensus 17 ~~~~~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~~----------~g---------------- 65 (108)
T 2jrs_A 17 NNLQKGSAGPMRLYVGSLHFN-ITEDMLRGIFEPF----GRIESIQLMMDSE----------TG---------------- 65 (108)
T ss_dssp CSSCCSCSSCEEEEEECCCSS-CCHHHHHHHHTTT----SCEEEEEEEEETT----------TT----------------
T ss_pred cccccCCCCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEEcCC----------CC----------------
Confidence 445666678999999999995 9999999999877 7899998864210 00
Q ss_pred chhhhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 246 NDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 246 ~e~~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
+. --||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 66 ---------------~~-~g~afV~F~~~~~A~~Ai~~l~g~~i~--g~~l~V~~ 102 (108)
T 2jrs_A 66 ---------------RS-KGYGFITFSDSECAKKALEQLNGFELA--GRPMKVGH 102 (108)
T ss_dssp ---------------EE-EEEEEEEESCHHHHHHHHHHHTTCCSS--SSCCEEEC
T ss_pred ---------------cc-ceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEE
Confidence 11 248999999999999999999998775 34444444
No 35
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.20 E-value=0.058 Score=46.48 Aligned_cols=75 Identities=12% Similarity=0.204 Sum_probs=57.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.+++.|=|.||.| .++-.||..+|+.| |.|.+|.|-+. .
T Consensus 13 ~p~~~l~V~nLp~-~~te~~L~~~F~~f----G~v~~v~i~~~------------k------------------------ 51 (101)
T 2cq1_A 13 APSRVLHIRKLPG-EVTETEVIALGLPF----GKVTNILMLKG------------K------------------------ 51 (101)
T ss_dssp SCCSEEEEESCCT-TCCHHHHHHTTTTT----SCEEEEEEETT------------T------------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhc----CCEEEEEEECC------------C------------------------
Confidence 5789999999999 68999999999877 78999987642 1
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
=||.|+|.+.+.|......++|..++..+..|-+.|
T Consensus 52 ------------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 52 ------------NQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp ------------TEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred ------------CEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 289999999999999998776433333344444433
No 36
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=95.19 E-value=0.035 Score=47.29 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=60.2
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+++|=|.||.|+.+.-.||..+|+.| |.|.+|.| +.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~----G~v~~v~i-----------------~~---------------------- 62 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKY----GRVAGCSV-----------------HK---------------------- 62 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGG----SCCSEEEE-----------------ET----------------------
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEE-----------------eC----------------------
Confidence 568999999999999999999999987 67888888 00
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
-||.|+|.+.+.|......++|..+. +..|-+++.
T Consensus 63 -----------g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~a 97 (110)
T 1wf1_A 63 -----------GYAFVQYSNERHARAAVLGENGRVLA--GQTLDINMA 97 (110)
T ss_dssp -----------TEEEEECSSSHHHHHHHHHHTTCEET--TEECCEEES
T ss_pred -----------CEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEEC
Confidence 28999999999999999999998885 445555443
No 37
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=95.19 E-value=0.11 Score=43.64 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=61.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.| ++...+|..+|+.| |.|.+|.|....- .|-
T Consensus 21 ~~~~~l~V~nlp~-~~t~~~l~~~f~~~----G~i~~v~i~~~~~----------~~~---------------------- 63 (106)
T 1p27_B 21 VEGWILFVTGVHE-EATEEDIHDKFAEY----GEIKNIHLNLDRR----------TGY---------------------- 63 (106)
T ss_dssp TTBEEEEEECCCT-TCCHHHHHHHHGGG----SCEEEEEEEECTT----------TSS----------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHhcc----CCeEEEEEEecCC----------CCc----------------------
Confidence 4678999999999 69999999999988 7899999864210 010
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLR 299 (610)
.-=||.|+|.+.+.|......++|..+. +..|-++
T Consensus 64 ----------~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~ 98 (106)
T 1p27_B 64 ----------LKGYTLVEYETYKEAQAAMEGLNGQDLM--GQPISVD 98 (106)
T ss_dssp ----------EEEEEEEEESCHHHHHHHHHHHTTCBSS--SSBCEEE
T ss_pred ----------eeeEEEEEECCHHHHHHHHHHhcCCEEC--CcEEEEE
Confidence 1248999999999999999999998876 3444443
No 38
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.17 E-value=0.091 Score=43.93 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=62.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.| ++...||..+|+.| |.|.+|.|.... .++
T Consensus 13 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~----G~i~~v~i~~~~-----------~~~---------------------- 54 (103)
T 2cqi_A 13 GQPRTLYVGNLSR-DVTEVLILQLFSQI----GPCKSCKMITEH-----------TSN---------------------- 54 (103)
T ss_dssp CCCCEEEEESCCT-TCCHHHHHHHHHHH----SCEEEEEEECCC-----------CSS----------------------
T ss_pred CCCCEEEEeCCCc-cCCHHHHHHHHHhc----CCEeEEEEEecC-----------CCC----------------------
Confidence 4789999999999 58999999999988 689999986530 000
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
--||.|+|.+.+.|......++|..+. +..|-++|-
T Consensus 55 -----------~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a 90 (103)
T 2cqi_A 55 -----------DPYCFVEFYEHRDAAAALAAMNGRKIL--GKEVKVNWA 90 (103)
T ss_dssp -----------CCEEEEEESSHHHHHHHHHHHTTEEET--TEEEEEEEC
T ss_pred -----------CCEEEEEECCHHHHHHHHHHhCCCCcC--CCeEEEEEC
Confidence 138999999999999999999999876 455555543
No 39
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.16 E-value=0.086 Score=43.64 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=61.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 6 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~----------------------- 47 (99)
T 1whw_A 6 SGSGRLFVRNLSYT-SSEEDLEKLFSAY----GPLSELHYPIDSL----------TK----------------------- 47 (99)
T ss_dssp CSCEEEEEECCCTT-CCHHHHHHHHHTT----SCEEEEECCCCTT----------TC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEeEEEEEecCC----------CC-----------------------
Confidence 47889999999996 8999999999987 7898888753220 01
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
..--||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 48 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~ 84 (99)
T 1whw_A 48 ---------KPKGFAFVTFMFPEHAVKAYAEVDGQVFQ--GRMLHVLP 84 (99)
T ss_dssp ---------CCCSEEEEEESSHHHHHHHHHHTTTEESS--SCEEEEEE
T ss_pred ---------CcCeEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEE
Confidence 01248999999999999999999999886 44554444
No 40
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=95.05 E-value=0.08 Score=43.82 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=60.1
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
++++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|.
T Consensus 1 P~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g~----------------------- 42 (96)
T 2x1f_A 1 PSRVVYLGSIPYD-QTEEQILDLCSNV----GPVINLKMMFDPQ----------TGR----------------------- 42 (96)
T ss_dssp CCSEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEECCBCTT----------TCC-----------------------
T ss_pred CCcEEEEECCCCC-CCHHHHHHHHHhc----CCEEEEEEEeCCC----------CCc-----------------------
Confidence 4789999999985 8899999999988 7899998754211 010
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
.--||.|+|.+.+.|......++|..+.- ..|-++|
T Consensus 43 ---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~ 78 (96)
T 2x1f_A 43 ---------SKGYAFIEFRDLESSASAVRNLNGYQLGS--RFLKCGY 78 (96)
T ss_dssp ---------BCSEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred ---------cceEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEE
Confidence 12489999999999999999999988764 4444444
No 41
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=95.02 E-value=0.063 Score=46.19 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=55.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|-||.|+ +...||..+|+.| |.|.+|.|. .
T Consensus 29 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~i~~v~i~--------------k------------------------ 65 (108)
T 2jvo_A 29 LSNTRLFVRPFPLD-VQESELNEIFGPF----GPMKEVKIL--------------N------------------------ 65 (108)
T ss_dssp CSCSEEEECSSCTT-CCHHHHHHHHTTT----SCCCEEEEE--------------T------------------------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhc----CCEEEEEEE--------------C------------------------
Confidence 47899999999996 8899999999877 678888886 1
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
=||.|+|.+.+.|......++|..+.
T Consensus 66 ------------g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 66 ------------GFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp ------------TEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred ------------CEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 18999999999999999999999884
No 42
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.99 E-value=0.065 Score=44.84 Aligned_cols=79 Identities=14% Similarity=0.288 Sum_probs=61.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.|+ +...+|..+|+.| |.|.+|.|..... .|
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~----G~i~~v~i~~~~~----------~~----------------------- 54 (103)
T 2cq0_A 13 DDNATIRVTNLSED-TRETDLQELFRPF----GSISRIYLAKDKT----------TG----------------------- 54 (103)
T ss_dssp SSSEEEEEESCCTT-CCHHHHHTTSTTT----CCEEEEEEEECSS----------SC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhC----CCeEEEEEeecCC----------CC-----------------------
Confidence 47899999999996 9999999999877 7899998864210 01
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
.-.-||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 55 ---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~ 91 (103)
T 2cq0_A 55 ---------QSKGFAFISFHRREDAARAIAGVSGFGYD--HLILNVEW 91 (103)
T ss_dssp ---------SEEEEEEEEESSHHHHHHHHHHTTTCEET--TEECEEEE
T ss_pred ---------ceeeEEEEEECCHHHHHHHHHHcCCCeeC--CcEEEEEE
Confidence 01348999999999999999999999876 34444444
No 43
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.95 E-value=0.072 Score=47.74 Aligned_cols=73 Identities=11% Similarity=0.186 Sum_probs=58.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.+++.|=|-||.|+ ++-.||..+|+.| |.|.+|.|-++ .|
T Consensus 29 ~ps~~LfVgNLp~~-vte~dL~~lF~~f----G~V~~v~i~~~------------kG----------------------- 68 (119)
T 2ad9_A 29 VPSRVIHIRKLPID-VTEGEVISLGLPF----GKVTNLLMLKG------------KN----------------------- 68 (119)
T ss_dssp SCCSEEEEESCCTT-CCHHHHHHHHTTT----SCCCEEEEEGG------------GT-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEeCC------------CC-----------------------
Confidence 57899999999997 9999999999977 78999998652 11
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDL 298 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDL 298 (610)
||.|+|.+.+.|......++|.-++..+..|-+
T Consensus 69 -------------~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 69 -------------QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp -------------EEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred -------------EEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 899999999999999998886433333444433
No 44
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.93 E-value=0.14 Score=42.02 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=62.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|....- .|
T Consensus 3 ~~~~~l~v~nlp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~~----------~~----------------------- 44 (95)
T 2dnz_A 3 SGSSGLYVGSLHFN-ITEDMLRGIFEPF----GKIDNIVLMKDSD----------TG----------------------- 44 (95)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHHTTT----SCEEEEEEECCSS----------SC-----------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhc----CCEeEEEEeecCC----------CC-----------------------
Confidence 36889999999995 8999999999987 6899998864210 00
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
.-.-||.|+|.+.+.|......++|..+. +..|-+++.
T Consensus 45 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a 82 (95)
T 2dnz_A 45 ---------RSKGYGFITFSDSECARRALEQLNGFELA--GRPMRVGHV 82 (95)
T ss_dssp ---------CCCSEEEEEESCHHHHHHHHHHHTTCCSS--SSCCEEEES
T ss_pred ---------ceeeEEEEEECCHHHHHHHHHHhCCCeeC--CcEEEEEEc
Confidence 01248999999999999999999998875 455655554
No 45
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=94.92 E-value=0.088 Score=45.96 Aligned_cols=66 Identities=23% Similarity=0.175 Sum_probs=56.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.+++.|-|.||.|+ +.-.||..+|+.| |.|.+|.|-++ .
T Consensus 19 ~ps~~l~V~NLp~~-~te~~L~~lF~~f----G~V~~v~i~~~------------k------------------------ 57 (100)
T 3r27_A 19 PASPVVHIRGLIDG-VVEADLVEALQEF----GPISYVVVMPK------------K------------------------ 57 (100)
T ss_dssp CCCSEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEETT------------T------------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHhcc----CCEEEEEEEcC------------C------------------------
Confidence 48899999999987 7899999999988 78999998531 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
=||.|++.+++.|....+.++|..+..
T Consensus 58 ------------g~AFVef~~~~~A~~Av~~ln~~~~~i 84 (100)
T 3r27_A 58 ------------RQALVEFEDVLGACNAVNYAADNQIYI 84 (100)
T ss_dssp ------------TEEEEEESSHHHHHHHHHHHHHSCEEE
T ss_pred ------------CEEEEEECCHHHHHHHHHHhcCCCcee
Confidence 189999999999999999999877543
No 46
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.85 E-value=0.1 Score=43.63 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=61.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|-||.|+ +...||..+|+.| |.|.+|.|....- .|.
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~~---------------------- 55 (105)
T 1x5u_A 13 NQDATVYVGGLDEK-VSEPLLWELFLQA----GPVVNTHMPKDRV----------TGQ---------------------- 55 (105)
T ss_dssp CTTTEEEEECCCTT-CCHHHHHHHHHTT----SCEEEEECCBCSS----------SCS----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CCc----------------------
Confidence 47899999999996 8999999999988 7899988754210 010
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
---||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 56 ----------~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 91 (105)
T 1x5u_A 56 ----------HQGYGFVEFLSEEDADYAIKIMDMIKLY--GKPIRVNK 91 (105)
T ss_dssp ----------BCSCEEEEESSHHHHHHHHHHSSSCBCS--SCBCEEEE
T ss_pred ----------CCcEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEE
Confidence 1238999999999999999999998876 34444444
No 47
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=94.82 E-value=0.11 Score=42.85 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=58.5
Q ss_pred CCCceeEEeccCCCccchhhHH----HHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchh
Q 007265 173 NETHRLAIVNMDWRHVKAVDLL----VILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDE 248 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~----vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~ 248 (610)
.++++|=|.||.| ++...||. .+|+.| |.|.+|.|.. .|..
T Consensus 6 ~~~~~l~V~nLp~-~~~~~~l~~~l~~~f~~~----G~i~~v~i~~-------------~~~~----------------- 50 (97)
T 1nu4_A 6 RPNHTIYINNLNE-KIKKDELKKSLHAIFSRF----GQILDILVSR-------------SLKM----------------- 50 (97)
T ss_dssp CCCSEEEEESCCT-TSCHHHHHHHHHHHHGGG----SCEEEEECCH-------------HHHH-----------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhC----CCEEEEEEEc-------------CCCc-----------------
Confidence 5889999999998 58888888 666665 7899888751 1111
Q ss_pred hhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 249 IDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 249 ~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
--||.|+|.+.+.|......++|..+. +..|-+.|
T Consensus 51 ---------------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~ 85 (97)
T 1nu4_A 51 ---------------RGQAFVIFKEVSSATNALRSMQGFPFY--DKPMRIQY 85 (97)
T ss_dssp ---------------TTCEEEEESSHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred ---------------CcEEEEEeCCHHHHHHHHHHhCCCEEC--CcEEEEEE
Confidence 128999999999999999999998884 45555544
No 48
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=94.80 E-value=0.13 Score=41.32 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=56.9
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+++|-|.||.|+ +...||..+|+.| |.|.+|.|..... .|-
T Consensus 5 ~~~~l~v~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~~----------------------- 46 (87)
T 3bs9_A 5 SHFHVFVGDLSPE-ITTAAIAAAFAPF----GRISDARVVKDMA----------TGK----------------------- 46 (87)
T ss_dssp -CEEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEEECTT----------TCC-----------------------
T ss_pred CceEEEEeCCCCC-CCHHHHHHHHHhc----CCEeEEEEEecCC----------CCc-----------------------
Confidence 6789999999997 9999999999987 6799998854310 010
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
.--||.|+|.+.+.|......++|..+.-
T Consensus 47 ---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 47 ---------SKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp ---------EEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ---------cceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 12489999999999999999999988753
No 49
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.76 E-value=0.072 Score=45.94 Aligned_cols=77 Identities=19% Similarity=0.174 Sum_probs=63.0
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
..++|-|-||.|+ +.-.||..+|+.| |.|.+|.|-++
T Consensus 9 ~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~v~i~~~-------------------------------------- 45 (111)
T 1whx_A 9 SKTVILAKNLPAG-TLAAEIQETFSRF----GSLGRVLLPEG-------------------------------------- 45 (111)
T ss_dssp EEEEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEECCSS--------------------------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEeCC--------------------------------------
Confidence 4678999999997 7999999999987 78988887531
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccccCCCC
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPDTM 305 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFVPDd~ 305 (610)
| -||.|+|.+.+.|......++|..|. +..|-+.|-+..+
T Consensus 46 ---------~-g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a~~~~ 85 (111)
T 1whx_A 46 ---------G-ITAIVEFLEPLEARKAFRHLAYSKFH--HVPLYLEWAPIGV 85 (111)
T ss_dssp ---------S-SCEEEEESCHHHHHHHHHHHTTCBSS--SSBCEEEEEETTT
T ss_pred ---------C-CEEEEEeCCHHHHHHHHHHhCCCEEC--CeEEEEEECCCCc
Confidence 0 16999999999999999999999986 5667777776643
No 50
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=94.72 E-value=0.12 Score=46.05 Aligned_cols=79 Identities=16% Similarity=0.283 Sum_probs=61.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.++++|-|.||.|+ +...||..+|+.| |.|.+|.|..... .|..
T Consensus 44 ~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~I~~v~i~~d~~----------tg~~--------------------- 87 (129)
T 2kxn_B 44 DPNCCLGVFGLSLY-TTERDLREVFSKY----GPIADVSIVYDQQ----------SRRS--------------------- 87 (129)
T ss_dssp CCSSCBCEETCTTS-CCHHHHHHHHTTT----SCEEEEEEECCSS----------SSCC---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CCcc---------------------
Confidence 57899999999997 8999999999877 7899999864210 0111
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
--||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 88 -----------~G~afV~F~~~~~A~~Ai~~lng~~i~--g~~l~V~~ 122 (129)
T 2kxn_B 88 -----------RGFAFVYFENVDDAKEAKERANGMELD--GRRIRVDF 122 (129)
T ss_dssp -----------CCEEEEEESCHHHHHHHHHHHTTCCSS--SSCCEESC
T ss_pred -----------ceEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEEE
Confidence 238999999999999999999998875 34444433
No 51
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.69 E-value=0.047 Score=45.50 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=60.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 10 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~----G~i~~v~i~~~~~----------~~----------------------- 51 (102)
T 2cqb_A 10 TTKRVLYVGGLAEE-VDDKVLHAAFIPF----GDITDIQIPLDYE----------TE----------------------- 51 (102)
T ss_dssp CCCSCEEEESCCSS-CCHHHHHHHHTTT----SCCCCEECCCCSS----------SC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHhhcc----CCEEEEEEEecCC----------CC-----------------------
Confidence 47899999999997 9999999999987 6788887743210 00
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
..--||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 52 ---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~ 88 (102)
T 2cqb_A 52 ---------KHRGFAFVEFELAEDAAAAIDNMNESELF--GRTIRVNL 88 (102)
T ss_dssp ---------CCSSEEEECCSSHHHHHHHHHHHTTEEET--TEEEEEEE
T ss_pred ---------CcceEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEe
Confidence 01248999999999999999999998886 44444444
No 52
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.67 E-value=0.068 Score=43.04 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=56.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.++++|-|.||.|+ +...+|..+|+.| |.|.+|.|.+..- .|..
T Consensus 3 ~~~~~l~v~nlp~~-~t~~~l~~~f~~~----G~i~~~~i~~~~~----------~~~~--------------------- 46 (85)
T 1x4e_A 3 SGSSGLYIRGLQPG-TTDQDLVKLCQPY----GKIVSTKAILDKT----------TNKC--------------------- 46 (85)
T ss_dssp CCCCEEEEESCCTT-CCHHHHHTTSTTT----SCEEEEEEECCSS----------SCSC---------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CCCc---------------------
Confidence 47899999999985 8889999888877 7899998864311 0110
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
-=||.|+|.+.+.|......++|..+.
T Consensus 47 -----------~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 47 -----------KGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp -----------CSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred -----------CcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 138999999999999999999998654
No 53
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.56 E-value=0.11 Score=43.15 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=61.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|....= |..
T Consensus 15 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~-----------g~~--------------------- 57 (100)
T 2do4_A 15 LEKHKLFISGLPFS-CTKEELEEICKAH----GTVKDLRLVTNRA-----------GKP--------------------- 57 (100)
T ss_dssp CCCSCEEEESCCTT-CCHHHHHHHHTTT----SCEEEEEEEECTT-----------SCE---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhC----CCeEEEEEEECCC-----------CCE---------------------
Confidence 46789999999994 8999999999987 7899999875321 111
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
-=||.|+|.+.+.|......++|..+.- ..|-+++
T Consensus 58 -----------~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~ 92 (100)
T 2do4_A 58 -----------KGLAYVEYENESQASQAVMKMDGMTIKE--NIIKVAI 92 (100)
T ss_dssp -----------EEEEEEEESSHHHHHHHHHHHTTEESSS--CEEEEEE
T ss_pred -----------EeEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEE
Confidence 2489999999999999999999988753 4444433
No 54
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=94.55 E-value=0.1 Score=49.93 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=62.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCC-ceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG-QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG-~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
.++++|-|.||.| .+.-.+|..+|+.| | .|.+|.|+|..
T Consensus 149 ~~~~~l~V~nlp~-~~t~~~l~~~f~~~----G~~i~~v~i~~~~----------------------------------- 188 (229)
T 2adc_A 149 PPSATLHLSNIPP-SVSEEDLKVLFSSN----GGVVKGFKFFQKD----------------------------------- 188 (229)
T ss_dssp CSCSEEEEECCCT-TCCHHHHHHHHHTT----SCCEEEEEECSSS-----------------------------------
T ss_pred CCCCEEEEeCCCc-cCCHHHHHHHHHHc----CCCeeEEEEEECC-----------------------------------
Confidence 4689999999999 58899999999988 7 99999998831
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
| -||.|+|.+.+.|......++|..+. .+..|-+.|
T Consensus 189 -----------~-g~afV~f~~~~~A~~Ai~~l~g~~~~-~g~~l~v~~ 224 (229)
T 2adc_A 189 -----------R-KMALIQMGSVEEAVQALIDLHNHDLG-ENHHLRVSF 224 (229)
T ss_dssp -----------T-TCEEEEESSHHHHHHHHHHHTTCBSS-SSCBCEEEE
T ss_pred -----------C-cEEEEEECCHHHHHHHHHHHCCCccC-CCCeEEEEE
Confidence 0 28999999999999999999999884 244555544
No 55
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=94.55 E-value=0.074 Score=49.04 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=61.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCC-ceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG-QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG-~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
.++++|-|.||.|+ +.-.+|..+|+.| | .|.+|.|+|.. .
T Consensus 118 ~~~~~l~v~nl~~~-~~~~~l~~~f~~~----G~~v~~v~i~~~~-----------~----------------------- 158 (198)
T 1qm9_A 118 PPSATLHLSNIPPS-VSEEDLKVLFSSN----GGVVKGFKFFQKD-----------R----------------------- 158 (198)
T ss_dssp CCCCEEEECCCCTT-CCHHHHHHHHHHT----TSCCCEEEESSTT-----------S-----------------------
T ss_pred CCccEEEEeCCCCC-CCHHHHHHHHHHc----CCCceEEEEEeCC-----------C-----------------------
Confidence 46899999999994 7899999999998 6 89999998831 0
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
-||.|+|.+.+.|......++|..+. .+..|-+.|
T Consensus 159 -------------g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~l~v~~ 193 (198)
T 1qm9_A 159 -------------KMALIQMGSVEEAVQALIDLHNHDLG-ENHHLRVSF 193 (198)
T ss_dssp -------------SCEEEECSSHHHHHHHHHHHTSSCCS-SCCSCCEEE
T ss_pred -------------cEEEEEeCCHHHHHHHHHHhcCCccC-CCCeEEEEe
Confidence 27999999999999999999999884 244554444
No 56
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.52 E-value=0.062 Score=47.68 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=57.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.++++|=|.||.|+.++-.||..+|+.| |.|.+|.|-++ .
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~f----G~V~~v~i~~~------------k------------------------ 62 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPY----GKIKNYILMRM------------K------------------------ 62 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTT----SCCSEEEEETT------------T------------------------
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhc----CCEEEEEEecC------------C------------------------
Confidence 5789999999999889999999999876 78999998421 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKL 296 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~l 296 (610)
=||.|+|.+.+.|....+.++|.....-+..|
T Consensus 63 ------------g~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 63 ------------SQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp ------------TEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred ------------CEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 18999999999999999988764433333333
No 57
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=94.49 E-value=0.2 Score=42.68 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=62.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~----------------------- 54 (115)
T 2dgo_A 13 SNHFHVFVGDLSPE-ITTEDIKAAFAPF----GRISDARVVKDMA----------TG----------------------- 54 (115)
T ss_dssp TTCEEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEEcCC----------CC-----------------------
Confidence 46789999999996 8999999999988 7899998864210 01
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
.---||.|+|.+.+.|......|+|..+.- ..|-++|-
T Consensus 55 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a 92 (115)
T 2dgo_A 55 ---------KSKGYGFVSFFNKWDAENAIQQMGGQWLGG--RQIRTNWA 92 (115)
T ss_dssp ---------CEEEEEEEEESSHHHHHHHHHHTTTCEETT--EECEEEES
T ss_pred ---------CcceEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEEc
Confidence 012489999999999999999999988754 45555553
No 58
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.49 E-value=0.15 Score=45.69 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=61.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|+ +.-.+|..+|+.| |.|.+|.|... |
T Consensus 71 ~~~~~l~V~nl~~~-~t~~~l~~~F~~~----G~i~~v~i~~~--------------~---------------------- 109 (150)
T 2i2y_A 71 PLDCKVYVGNLGNN-GNKTELERAFGYY----GPLRSVWVARN--------------P---------------------- 109 (150)
T ss_dssp TTSCEEEEESCCSC-CSCHHHHHHHHHH----SCEEEEEECSS--------------S----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhh----CCEEEEEEeeC--------------C----------------------
Confidence 47899999999995 7999999999998 78999998642 1
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
--||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 110 -----------~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 144 (150)
T 2i2y_A 110 -----------PGFAFVEFEDPRDAADAVRELDGRTLC--GCRVRVEL 144 (150)
T ss_dssp -----------CSEEEEEESSHHHHHHHHHHHSSSCSS--SSCCEEEE
T ss_pred -----------CcEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEE
Confidence 128999999999999999999998874 45554444
No 59
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=94.44 E-value=0.18 Score=45.40 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=63.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|....- .|
T Consensus 37 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~----------------------- 78 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFY-TTEEQIYELFSKS----GDIKKIIMGLDKM----------KK----------------------- 78 (156)
T ss_dssp TTCCEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CC-----------------------
Confidence 47899999999985 8999999999988 6799999865321 01
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
.---||.|+|.+.+.|......++|..+. +..|-+.+-
T Consensus 79 ---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a 116 (156)
T 1h2v_Z 79 ---------TACGFCFVEYYSRADAENAMRYINGTRLD--DRIIRTDWD 116 (156)
T ss_dssp ---------CEEEEEEEEESSHHHHHHHHHHTTTSEET--TEECEEEEE
T ss_pred ---------ccceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEEC
Confidence 01248999999999999999999999985 455555554
No 60
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=94.35 E-value=0.15 Score=43.46 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=61.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|....- .|
T Consensus 23 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g----------------------- 64 (115)
T 2cpz_A 23 PEGANLFIYHLPQE-FGDQDLLQMFMPF----GNVVSAKVFIDKQ----------TN----------------------- 64 (115)
T ss_dssp STTCCEEEESCCSS-CCHHHHHHHHGGG----SCCSEEEEEECSS----------SC-----------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEECCC----------CC-----------------------
Confidence 46789999999996 8899999999987 6788888854210 00
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
..--||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 65 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~ 101 (115)
T 2cpz_A 65 ---------LSKCFGFVSYDNPVSAQAAIQSMNGFQIG--MKRLKVQL 101 (115)
T ss_dssp ---------SEEEEEEEECSSHHHHHHHHHHHTTCEET--TEECEEEC
T ss_pred ---------CcCccEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEE
Confidence 01249999999999999999999998876 34444444
No 61
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.35 E-value=0.16 Score=41.55 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=56.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|.+..-+ |-+
T Consensus 14 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~~~----------~~~--------------------- 57 (94)
T 2e5h_A 14 PSKSTVYVSNLPFS-LTNNDLYRIFSKY----GKVVKVTIMKDKDT----------RKS--------------------- 57 (94)
T ss_dssp CCTTSEEEESCCTT-SCHHHHHHHTTTT----SCEEEEEECCCSSS----------CCC---------------------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhc----CCeEEEEEEeCCCC----------CCc---------------------
Confidence 46789999999985 7889999999887 68999988653210 000
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
--||.|+|.+.+.|......++|..+.
T Consensus 58 -----------~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 58 -----------KGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp -----------TTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred -----------ccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 137999999999999999999998876
No 62
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.32 E-value=0.056 Score=44.42 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=59.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEE-EEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSV-AVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V-~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
..+++|-|.||.|+ +...||..+|+.| |.|.+| .|..... .|.
T Consensus 3 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~~~~i~~~~~----------~g~--------------------- 46 (96)
T 1x5t_A 3 SGSSGIFIGNLDPE-IDEKLLYDTFSAF----GVILQTPKIMRDPD----------TGN--------------------- 46 (96)
T ss_dssp SCCCEEEEECCCTT-CCHHHHHHHHHTT----SCBSSCCEECCCTT----------TCS---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEEEEcCC----------CCC---------------------
Confidence 36789999999997 8999999999987 567776 6543200 010
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
---||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 47 -----------~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~ 82 (96)
T 1x5t_A 47 -----------SKGYAFINFASFDASDAAIEAMNGQYLC--NRPITVSY 82 (96)
T ss_dssp -----------CCSEEEEEBSSHHHHHHHHHTTTTCEET--TEECEEEE
T ss_pred -----------cCeEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEE
Confidence 1248999999999999999999999975 34444443
No 63
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.23 E-value=0.22 Score=41.62 Aligned_cols=81 Identities=15% Similarity=0.285 Sum_probs=62.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|-||.|+ +...||..+|+.| |.|.+|.|.... ...|-
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~---------~~~~~---------------------- 56 (107)
T 2cph_A 13 QTTSKILVRNIPFQ-ANQREIRELFSTF----GELKTVRLPKKM---------TGTGA---------------------- 56 (107)
T ss_dssp SCCCCEEEESCCTT-CCHHHHHHHHHTT----SCEEEEECCCCC---------SSSCS----------------------
T ss_pred CCCCEEEEeCCCCc-CCHHHHHHHHHcc----CCeEEEEEecCC---------CCCCC----------------------
Confidence 47899999999995 8999999999987 689999875421 00000
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhc-Ccccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRAC-DGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ec-DG~E~E~San~lDLRFV 301 (610)
.--||.|+|.+.+.|......+ +|..+. +..|-++|-
T Consensus 57 ----------~~g~afV~f~~~~~a~~A~~~l~~~~~~~--g~~l~v~~a 94 (107)
T 2cph_A 57 ----------HRGFGFVDFITKQDAKKAFNALCHSTHLY--GRRLVLEWA 94 (107)
T ss_dssp ----------SCSEEEEEESSHHHHHHHHHHHHTCCBSS--SCBCEEEEC
T ss_pred ----------cCceEEEEECCHHHHHHHHHHhccCCeEC--CCEEEEEeC
Confidence 1238999999999999999999 999887 455555554
No 64
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=94.22 E-value=0.18 Score=46.19 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=58.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.| ++...+|..+|+.| |.|.+|.|...-. .|
T Consensus 70 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~----G~i~~v~i~~~~~----------~g----------------------- 111 (165)
T 1rk8_A 70 VEGWILFVTSIHE-EAQEDEIQEKFCDY----GEIKNIHLNLDRR----------TG----------------------- 111 (165)
T ss_dssp C-CEEEEEESCCT-TCCHHHHHHHHGGG----SCEEEEEEEECTT----------TS-----------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHhhcC----CCEEEEEEEecCC----------CC-----------------------
Confidence 4678999999999 69999999999988 7899999865310 01
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
+ --=||.|+|.+.+.|......|+|+.+.-
T Consensus 112 --------~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 112 --------F-SKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp --------S-EEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred --------c-EeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 0 02389999999999999999999988753
No 65
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.20 E-value=0.15 Score=42.46 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=58.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|....-. |
T Consensus 10 ~~~~~l~v~nLp~~-~t~~~l~~~f~~~----G~i~~v~i~~~~~~----------~----------------------- 51 (102)
T 1x5s_A 10 SDEGKLFVGGLSFD-TNEQSLEQVFSKY----GQISEVVVVKDRET----------Q----------------------- 51 (102)
T ss_dssp CCCSEEEEESCCTT-CCHHHHHHHHHHH----SCCCEEEECCCSSS----------C-----------------------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhc----CCeEEEEEEeCCCC----------C-----------------------
Confidence 47889999999996 8999999999988 67889988542100 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
...-||.|+|.+.+.|......++|..+.-
T Consensus 52 ---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 1x5s_A 52 ---------RSRGFGFVTFENIDDAKDAMMAMNGKSVDG 81 (102)
T ss_dssp ---------SCCSEEEEECSSHHHHHHHHHHHTTCCTTS
T ss_pred ---------CcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 012389999999999999999999998753
No 66
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.19 E-value=0.088 Score=45.71 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=58.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
++++.|=|.||.|.+++-.||..+|.-| |.|.+|.|-++ +
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~f----G~V~~v~i~~~--------------k---------------------- 52 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPF----GVISNHLILNK--------------I---------------------- 52 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGG----SCEEEEEECSS--------------S----------------------
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhc----CCEEEEEEEcC--------------C----------------------
Confidence 4789999999999889999999999877 89999998531 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKL 296 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~l 296 (610)
-||-|+|.+.+.|....+.++|...+.-+..|
T Consensus 53 ------------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 53 ------------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp ------------SCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ------------CEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 16999999999999999998876544334433
No 67
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=94.18 E-value=0.21 Score=39.66 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=58.6
Q ss_pred CceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHHH
Q 007265 175 THRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKL 254 (610)
Q Consensus 175 T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~L 254 (610)
|.+|=|-||.|+ +...||..+|+.| |.|.+|.|-...- .|
T Consensus 1 t~~l~V~nlp~~-~t~~~l~~~f~~~----G~i~~~~i~~~~~----------~~------------------------- 40 (83)
T 3md1_A 1 TFNLFVGDLNVN-VDDETLRNAFKDF----PSYLSGHVMWDMQ----------TG------------------------- 40 (83)
T ss_dssp CEEEEEECCCTT-CCHHHHHHHHTTS----TTEEEEEEEECTT----------TC-------------------------
T ss_pred CeEEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEEEcCC----------CC-------------------------
Confidence 578999999996 8999999999877 7899998854210 01
Q ss_pred HHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 007265 255 RAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (610)
Q Consensus 255 R~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLR 299 (610)
..-=||.|+|.+.+.|......++|..+. +..|-++
T Consensus 41 -------~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~v~ 76 (83)
T 3md1_A 41 -------SSRGYGFVSFTSQDDAQNAMDSMQGQDLN--GRPLRIN 76 (83)
T ss_dssp -------CEEEEEEEEESCHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred -------CccceEEEEECCHHHHHHHHHHhcCCeeC--CcEEEEE
Confidence 01348999999999999999999999875 3444443
No 68
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=94.18 E-value=0.16 Score=42.51 Aligned_cols=80 Identities=21% Similarity=0.237 Sum_probs=61.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.| ++...+|..+|+.| |.|.+|.|....- |-.
T Consensus 13 ~~~~~l~v~nLp~-~~t~~~l~~~F~~~----G~i~~v~i~~~~~-----------g~~--------------------- 55 (105)
T 2dnh_A 13 GRDRKLFVGMLNK-QQSEEDVLRLFQPF----GVIDECTVLRGPD-----------GSS--------------------- 55 (105)
T ss_dssp CCCCEEEEESCCT-TCCHHHHHHHHTTT----SCEEEEEEEECSS-----------SCE---------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhc----CCeEEEEEEECCC-----------CCc---------------------
Confidence 4689999999999 57899999999977 6799999875321 111
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc-ccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER-SSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~-San~lDLRF 300 (610)
--||.|+|.+.+.|......++|..+.- ....|-++|
T Consensus 56 -----------~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 56 -----------KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp -----------EEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred -----------CcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 2489999999999999999999998764 224444443
No 69
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=94.17 E-value=0.082 Score=44.04 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=58.6
Q ss_pred ceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHHHH
Q 007265 176 HRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKLR 255 (610)
Q Consensus 176 ~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~LR 255 (610)
.+|=|.||.| ++...||..+|+.| |.|.+|.|.+. +
T Consensus 1 ~~l~V~nLp~-~~t~~~l~~~F~~~----G~i~~v~i~~~--------------~------------------------- 36 (101)
T 2hvz_A 1 MKVYVGNLGT-GAGKGELERAFSYY----GPLRTVWIARN--------------P------------------------- 36 (101)
T ss_dssp CEEEEECCCS-SCSHHHHHHHHHHH----CCCSEEEEESS--------------S-------------------------
T ss_pred CEEEEeCCCC-CCCHHHHHHHHHhc----CCeEEEEEeeC--------------C-------------------------
Confidence 3788999999 58999999999998 67889988754 1
Q ss_pred HHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 256 AYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 256 ~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
--||.|+|.+.+.|......++|..+. +..|-+++-
T Consensus 37 --------~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a 72 (101)
T 2hvz_A 37 --------PGFAFVEFEDPRDAEDAVRGLDGKVIC--GSRVRVELS 72 (101)
T ss_dssp --------SSEEEEECSSHHHHHHHHHHHHHSCSS--SCCCEEEES
T ss_pred --------CCEEEEEECCHHHHHHHHHHHCCCeEC--CcEEEEEEc
Confidence 138999999999999999999999875 444555543
No 70
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.07 E-value=0.22 Score=41.52 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=58.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhh-ccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSS-FLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~S-F~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
..+++|=|.||.|+ +...||..+|+. | |.|.+|.|.... .|.
T Consensus 7 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~~----G~v~~v~i~~~~-----------~g~--------------------- 49 (104)
T 2dhg_A 7 GPEYSLFVGDLTPD-VDDGMLYEFFVKVY----PSCRGGKVVLDQ-----------TGV--------------------- 49 (104)
T ss_dssp SCCCCEEEECCCTT-CCHHHHHHHHHHHC----TTEEEEEEEECT-----------TCC---------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHhC----CCeEEEEEEECC-----------CCC---------------------
Confidence 47899999999997 899999999998 6 689999886431 111
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccc-ccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVE-FER 291 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E-~E~ 291 (610)
.--||.|+|.+.+.|......++|.. +.-
T Consensus 50 -----------~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 50 -----------SKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp -----------EEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred -----------ccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 12489999999999999999999988 653
No 71
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=93.97 E-value=0.15 Score=43.54 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=57.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|....- .|-
T Consensus 38 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~~~i~~~~~----------~g~---------------------- 80 (118)
T 2khc_A 38 PEGCNLFIYHLPQE-FTDTDLASTFLPF----GNVISAKVFIDKQ----------TSL---------------------- 80 (118)
T ss_dssp CCSEEEEEECSCTT-CCHHHHHHHTTTS----CEEEEEEECCCSS----------SSC----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEeCCC----------CCC----------------------
Confidence 46789999999997 8999999999876 7899998853210 010
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
..=||.|+|.+.+.|......++|..+.-
T Consensus 81 ----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 109 (118)
T 2khc_A 81 ----------SKCFGFVSFDNPDSAQVAIKAMNGFQVGT 109 (118)
T ss_dssp ----------CCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred ----------cCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 12389999999999999999999988763
No 72
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=93.88 E-value=0.22 Score=43.08 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=59.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.|+ +...+|..+|+.| |.|.+|.|..... .|-
T Consensus 20 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~~---------------------- 62 (126)
T 3ex7_B 20 VEGWILFVTGVHEE-ATEEDIHDKFAEY----GEIKNIHLNLDRR----------TGY---------------------- 62 (126)
T ss_dssp SSSEEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEECCBCTT----------TSS----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CCc----------------------
Confidence 46889999999987 8999999999976 6899888753210 000
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLR 299 (610)
--=||.|+|.+.+.|......|+|..+.- ..|-+.
T Consensus 63 ----------~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~ 97 (126)
T 3ex7_B 63 ----------LKGYTLVEYETYKEAQAAMEGLNGQDLMG--QPISVD 97 (126)
T ss_dssp ----------BCSCEEEEESSHHHHHHHHHHHTTCBSSS--SBCEEE
T ss_pred ----------cceEEEEEECCHHHHHHHHHHhCCCeeCC--eEEEEE
Confidence 01389999999999999999999998853 444443
No 73
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.88 E-value=0.23 Score=41.79 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=60.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|.
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g~---------------------- 55 (111)
T 1x4h_A 13 TEGKTVFIRNLSFD-SEEEALGEVLQQF----GDLKYVRVVLHPD----------TEH---------------------- 55 (111)
T ss_dssp CCCCCEEEESCCTT-CCHHHHHHHHHTT----SCEEEEECCBCSS----------SCC----------------------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CCC----------------------
Confidence 57899999999997 8999999999987 6899888743210 011
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcC------ccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACD------GVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecD------G~E~E~San~lDLRF 300 (610)
.-=||.|+|.+.+.|......++ |..+. +..|-+++
T Consensus 56 ----------~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~--g~~l~v~~ 97 (111)
T 1x4h_A 56 ----------SKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD--GRQLKVDL 97 (111)
T ss_dssp ----------BCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS--SCEEEEEC
T ss_pred ----------CccEEEEEECCHHHHHHHHHHhccccccCCcEEc--CEEEEEEE
Confidence 12489999999999999999999 88875 34444444
No 74
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=93.81 E-value=0.17 Score=40.49 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=57.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|....- .|
T Consensus 5 ~~~~~l~V~nl~~~-~~~~~l~~~f~~~----G~i~~v~i~~~~~----------~~----------------------- 46 (85)
T 3mdf_A 5 TTKRVLYVGGLAEE-VDDKVLHAAFIPF----GDITDIQIPLDYE----------TE----------------------- 46 (85)
T ss_dssp CCSSEEEEECCCTT-CCHHHHHHHHGGG----SCEEEEECCEETT----------TT-----------------------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHhcc----CCEEEEEEEECCC----------CC-----------------------
Confidence 47899999999987 8899999999987 6888888733210 00
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
..-=||.|+|.+.+.|......++|..+.
T Consensus 47 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 75 (85)
T 3mdf_A 47 ---------KHRGFAFVEFELAEDAAAAIDNMNESELF 75 (85)
T ss_dssp ---------EECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ---------ccccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 11248999999999999999999999875
No 75
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.81 E-value=0.19 Score=41.54 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=58.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceE-EEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQIL-SVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~-~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
..+++|=|-||.|+ +...||..+|+.| |.|. +|.|.+... .|
T Consensus 7 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~~v~i~~~~~----------~g---------------------- 49 (99)
T 2div_A 7 GMAASLWMGDLEPY-MDENFISRAFATM----GETVMSVKIIRNRL----------TG---------------------- 49 (99)
T ss_dssp SSSSEEEECSCCTT-CCHHHHHHHHHHT----TCCCCEEEEEECSS----------SC----------------------
T ss_pred CCccEEEEeCCCCC-CCHHHHHHHHHHh----CCcceEEEEeecCC----------CC----------------------
Confidence 47899999999997 9999999999987 6777 888754210 00
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERS 292 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~S 292 (610)
+. --||.|+|.+.+.|......++|..+.-.
T Consensus 50 ---------~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 50 ---------IP-AGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp ---------CE-EEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred ---------Cc-CCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 11 24799999999999999999999887543
No 76
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=93.79 E-value=0.24 Score=41.85 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=57.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.| ++...+|..+|+.| |.|.+|.|..... .|-
T Consensus 24 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~~---------------------- 66 (110)
T 1oo0_B 24 VEGWILFVTSIHE-EAQEDEIQEKFCDY----GEIKNIHLNLDRR----------TGF---------------------- 66 (110)
T ss_dssp TTBEEEEEESCCT-TCCHHHHHHHHGGG----SCEEEEECCBCTT----------TSS----------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhc----CCEEEEEEEecCC----------CCC----------------------
Confidence 4778999999999 79999999999988 7899998743210 000
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
. --||.|+|.+.+.|......++|..+.
T Consensus 67 ---------~-~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 67 ---------S-KGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp ---------B-CSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ---------c-ceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 0 138999999999999999999998875
No 77
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=93.79 E-value=0.16 Score=48.56 Aligned_cols=76 Identities=13% Similarity=0.284 Sum_probs=63.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|..+...+|..+|+.| |.|.+|.|.... .
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~----G~i~~v~i~~~~-----------~------------------------ 72 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVY----GDVQRVKILFNK-----------K------------------------ 72 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHH----TCEEEEEECCTT-----------S------------------------
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEEEECC-----------C------------------------
Confidence 4789999999999999999999999988 789999987532 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
=||.|+|.+.+.|....+.++|..+. +..|-+.+.
T Consensus 73 ------------g~afV~F~~~~~A~~Ai~~l~g~~~~--g~~l~v~~a 107 (229)
T 2adc_A 73 ------------ENALVQMADGNQAQLAMSHLNGHKLH--GKPIRITLS 107 (229)
T ss_dssp ------------CCEEEEESCHHHHHHHHHHHTTCBCS--SSBCEEECC
T ss_pred ------------CEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEEe
Confidence 16999999999999999999998884 355555544
No 78
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=93.72 E-value=0.16 Score=48.63 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=60.4
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.++.|=|-||++..|...+|+.+|+.| |.|.+|.|...- .
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~----G~v~~v~i~~~~-----------~------------------------- 42 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLY----GNVEKVKFMKSK-----------P------------------------- 42 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTT----SCEEEEEECTTS-----------T-------------------------
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc----CCeEEEEEecCC-----------C-------------------------
Confidence 578899999997789999999999876 899999985320 0
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
=||.|+|.+.+.|......++|+.+.- ..|-+.|
T Consensus 43 -----------g~afV~f~~~~~A~~Ai~~lng~~~~g--~~l~v~~ 76 (205)
T 3tyt_A 43 -----------GAAMVEMADGYAVDRAITHLNNNFMFG--QKMNVCV 76 (205)
T ss_dssp -----------TCEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred -----------CEEEEEECCHHHHHHHHHHhCCCEECC--ceEEEEE
Confidence 279999999999999999999999865 3344443
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.71 E-value=0.25 Score=43.37 Aligned_cols=65 Identities=11% Similarity=0.209 Sum_probs=54.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|+ ++-.||..+|+.| |.|.+|.|-++ .|
T Consensus 14 ~~~~~LfV~nLp~~-vte~dL~~lF~~f----G~V~~v~i~~~------------kG----------------------- 53 (105)
T 1sjq_A 14 VPSRVIHIRKLPID-VTEGEVISLGLPF----GKVTNLLMLKG------------KN----------------------- 53 (105)
T ss_dssp CCCCEEEECSCCTT-SCHHHHHHHHHHH----CCEEEEEEETT------------TT-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEcC------------CC-----------------------
Confidence 46889999999996 9999999999988 78999998752 11
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCc--cccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDG--VEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG--~E~E 290 (610)
||-|+|.+.+.|......++| .++.
T Consensus 54 -------------faFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 54 -------------QAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp -------------EEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred -------------EEEEEECCHHHHHHHHHHhccCCceEC
Confidence 899999999999999988765 4543
No 80
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.70 E-value=0.097 Score=43.61 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=57.5
Q ss_pred CCCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 172 DNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 172 ~~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
+..+++|-|-||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 5 ~~~~~~l~V~nlp~~-~~~~~l~~~f~~~----G~i~~~~i~~~~~----------~g---------------------- 47 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYE-ATEEQLKDIFSEV----GPVVSFRLVYDRE----------TG---------------------- 47 (104)
T ss_dssp HHHHSCEEEESCCTT-SCHHHHHHHHHTT----SCCSEEEEEEETT----------TT----------------------
T ss_pred CCCccEEEEeCCCCc-CCHHHHHHHHHhc----CCeeEEEEEeCCC----------CC----------------------
Confidence 357899999999986 8899999999987 6788888764210 01
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
+ ---||.|+|.+.+.|......++|..+.
T Consensus 48 ---------~-~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (104)
T 1p1t_A 48 ---------K-PKGYGFCEYQDQETALSAMRNLNGREFS 76 (104)
T ss_dssp ---------E-EEEEEEEECSCHHHHHHHHHHSSSBSCS
T ss_pred ---------c-cceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 0 1248999999999999999999998874
No 81
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.67 E-value=0.13 Score=43.07 Aligned_cols=78 Identities=8% Similarity=0.069 Sum_probs=58.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|+ +...||..+|+.| | |.+|.|..-.-. .|
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G-i~~v~i~~~~~~---------~g----------------------- 54 (104)
T 1wi8_A 13 SPPYTAFLGNLPYD-VTEESIKEFFRGL----N-ISAVRLPREPSN---------PE----------------------- 54 (104)
T ss_dssp SSCEEEEEESCCSS-CCHHHHHHHTTTS----C-EEEEECCBCSSC---------TT-----------------------
T ss_pred CCCCEEEEeCCCCc-CCHHHHHHHHHHC----C-ceEEEEecCCCC---------CC-----------------------
Confidence 47799999999998 8999999999988 6 999987431100 01
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
+ .--||.|+|.+.+.|.... +++|..+.- ..|-+++
T Consensus 55 --------~-~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~V~~ 90 (104)
T 1wi8_A 55 --------R-LKGFGYAEFEDLDSLLSAL-SLNEESLGN--KRIRVDV 90 (104)
T ss_dssp --------S-BCSCEEEEESSHHHHHHHH-GGGTCEETT--EECEEEE
T ss_pred --------C-cCeEEEEEECCHHHHHHHH-hcCCCEeCC--cEEEEEE
Confidence 0 1238999999999999999 999998753 3444443
No 82
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=93.65 E-value=0.18 Score=49.19 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=60.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|-||.| .+...+|..+|+.| |.|.+|.|.+..
T Consensus 205 ~~~~~l~v~nl~~-~~~~~~l~~~F~~~----G~i~~v~~~~~~------------------------------------ 243 (282)
T 3pgw_A 205 PPNHILFLTNLPE-ETNELMLSMLFNQF----PGFKEVRLVPGR------------------------------------ 243 (282)
T ss_pred CCCCEEEEeCCCC-cCCHHHHHHHHHhc----CCeEEEEEecCC------------------------------------
Confidence 3678899999998 58999999999988 799999998411
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLR 299 (610)
-=||.|+|.+.+.|......++|..+.. +..|-+.
T Consensus 244 -----------~g~afV~f~~~~~A~~A~~~l~g~~~~~-g~~l~v~ 278 (282)
T 3pgw_A 244 -----------HDIAFVEFDNEVQAGAARDALQGFKITQ-NNAMKIS 278 (282)
T ss_pred -----------CcEEEEEeCCHHHHHHHHHHcCCcEeCC-CCEEEEE
Confidence 0289999999999999999999988872 3444333
No 83
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=93.64 E-value=0.19 Score=43.49 Aligned_cols=80 Identities=11% Similarity=0.041 Sum_probs=61.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.+++.|=|.||.|+ +.-.+|..+|+.| |.|.+|.|..... .|
T Consensus 4 ~p~~~lfV~nL~~~-~te~~L~~~F~~~----G~i~~v~i~~d~~----------tg----------------------- 45 (110)
T 3s8s_A 4 IPLKEVTFARLNDN-VRETFLKDMCRKY----GEVEEVEILLHPR----------TR----------------------- 45 (110)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHHTTT----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCCcEEEEECCCCC-CCHHHHHHHHHhc----CCeeEEEEEECCC----------CC-----------------------
Confidence 36789999999985 8999999999877 8999999864321 01
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
+. -=||.|+|.+.+.|......++|+++.- ..|-+.+-
T Consensus 46 --------~~-rG~aFV~f~~~~~A~~Ai~~lng~~~~g--r~i~V~~a 83 (110)
T 3s8s_A 46 --------KH-LGLARVLFTSTRGAKETVKNLHLTSVMG--NIIHAQLD 83 (110)
T ss_dssp --------CE-EEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEC
T ss_pred --------ce-eeEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEEC
Confidence 11 2489999999999999999999999864 44444443
No 84
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.62 E-value=0.18 Score=41.97 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=57.4
Q ss_pred CCceeEEeccCCCccchhhHH----HHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhh
Q 007265 174 ETHRLAIVNMDWRHVKAVDLL----VILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEI 249 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~----vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~ 249 (610)
..++|=|.||.|+ +...||. .+|+.| |.|.+|.|.+..-+
T Consensus 8 ~~~~l~V~nL~~~-~~~~~l~~~l~~~F~~~----G~v~~v~i~~~~~~------------------------------- 51 (96)
T 2dgx_A 8 NGADVQVSNIDYR-LSRKELQQLLQEAFARH----GKVKSVELSPHTDY------------------------------- 51 (96)
T ss_dssp SCEEEEEESCCTT-SCHHHHHHHHHHHHHHH----SCEEEEEECSCCST-------------------------------
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHhcccc----CcEEEEEEEeCCCC-------------------------------
Confidence 4679999999987 7888998 777766 78999998532110
Q ss_pred hHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 007265 250 DEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (610)
Q Consensus 250 d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLR 299 (610)
| =||.|+|.+.+.|......++|..+. +..|-+.
T Consensus 52 -------------r-g~afV~f~~~~~A~~Ai~~l~g~~~~--gr~l~V~ 85 (96)
T 2dgx_A 52 -------------Q-LKAVVQMENLQDAIGAVNSLHRYKIG--SKKILVS 85 (96)
T ss_dssp -------------T-CCEEEEESSHHHHHHHHHHHTTEEET--TEEEEEE
T ss_pred -------------C-eEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEE
Confidence 1 16999999999999999999999876 3444443
No 85
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.50 E-value=0.23 Score=40.87 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=53.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+| |+... .
T Consensus 6 ~~~~~l~V~nl~~~-~t~~~l~~~F~~~----G~v~~v-~~~~~----------------------------~------- 44 (94)
T 2e5g_A 6 SGLRSVFVSGFPRG-VDSAQLSEYFLAF----GPVASV-VMDKD----------------------------K------- 44 (94)
T ss_dssp TTCCEEEEECCCTT-CCHHHHHHHGGGT----SCEEEE-EECSS----------------------------S-------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhc----CCeEEE-EEcCC----------------------------C-------
Confidence 36789999999995 8899999999977 678877 43210 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERS 292 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~S 292 (610)
.+ ||.|+|.+.+.|.+... ++|..+.-.
T Consensus 45 -------g~----~afV~f~~~~~a~~ai~-l~g~~~~g~ 72 (94)
T 2e5g_A 45 -------GV----FAIVEMGDVGAREAVLS-QSQHSLGGH 72 (94)
T ss_dssp -------CC----EEEEEESSHHHHHHHHT-CSCCEETTE
T ss_pred -------Cc----EEEEEECCHHHHHHHHh-cCCeEECCE
Confidence 01 99999999999999999 999988643
No 86
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=93.50 E-value=0.36 Score=42.37 Aligned_cols=79 Identities=11% Similarity=0.239 Sum_probs=61.8
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+++|-|-||.| ++...+|..+|+.| |.|.+|.|.+... .|.
T Consensus 87 ~~~~l~v~nl~~-~~t~~~l~~~f~~~----G~i~~~~i~~~~~----------~g~----------------------- 128 (167)
T 1fxl_A 87 RDANLYVSGLPK-TMTQKELEQLFSQY----GRIITSRILVDQV----------TGV----------------------- 128 (167)
T ss_dssp TTCEEEEESCCT-TCCHHHHHHHHGGG----SCEEEEEEEECTT----------TCC-----------------------
T ss_pred CCCcEEECCCCC-cCCHHHHHHHHHhc----CCEeEEEEEecCC----------CCC-----------------------
Confidence 568899999998 57899999999987 7899999876321 111
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLR 299 (610)
.--||.|+|.+.+.|......++|..+.-....|-++
T Consensus 129 ---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 129 ---------SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp ---------EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred ---------ccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 1248999999999999999999999886544444444
No 87
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.50 E-value=0.3 Score=41.68 Aligned_cols=78 Identities=14% Similarity=0.227 Sum_probs=59.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|.
T Consensus 15 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~~---------------------- 57 (116)
T 2cqd_A 15 TTFTKIFVGGLPYH-TTDASLRKYFEGF----GDIEEAVVITDRQ----------TGK---------------------- 57 (116)
T ss_dssp CSSSEEEEECCCSS-CCHHHHHHHHHTT----SCEEEEEESCCSS----------SCC----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhC----CCeeEEEEEEcCC----------CCc----------------------
Confidence 47899999999995 8999999999987 7899998854210 000
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
.--||.|+|.+.+.|......++| .+. +..|-+++
T Consensus 58 ----------~~g~afV~f~~~~~a~~Ai~~~~~-~~~--g~~l~V~~ 92 (116)
T 2cqd_A 58 ----------SRGYGFVTMADRAAAERACKDPNP-IID--GRKANVNL 92 (116)
T ss_dssp ----------CCSEEEEEESSHHHHHHHHTCSSC-EET--TEECEEEE
T ss_pred ----------cceEEEEEECCHHHHHHHHHhCCC-cCC--CEEEEEEE
Confidence 124899999999999999999998 554 45555544
No 88
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=93.49 E-value=0.15 Score=54.61 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=59.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.+++.|-|.||.|+ |...+|..+|+.| |.|.+|.|..--. .|-
T Consensus 100 ~~~~~lfV~nL~~~-~te~~L~~~F~~~----G~I~~v~i~~d~~----------tg~---------------------- 142 (437)
T 3pgw_S 100 DAFKTLFVARVNYD-TTESKLRREFEVY----GPIKRIHMVYSKR----------SGK---------------------- 142 (437)
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHc----CCeeEEEeeccCC----------CCC----------------------
Confidence 57889999999996 7899999999987 7899999863210 010
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNK 295 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~ 295 (610)
--=||.|+|.+++.|.+.+..|+|+.|.-.-..
T Consensus 143 ----------~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~ 175 (437)
T 3pgw_S 143 ----------PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 175 (437)
T ss_pred ----------ccceEEEeeccHHHHHHHHHHcCCCEECCEEEE
Confidence 023899999999999999999999988544333
No 89
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=93.48 E-value=0.22 Score=41.69 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=60.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 11 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g----------------------- 52 (106)
T 2dgp_A 11 HDAIKLFIGQIPRN-LDEKDLKPLFEEF----GKIYELTVLKDRF----------TG----------------------- 52 (106)
T ss_dssp TTCEEEEEESCCTT-CCHHHHHHHHHHH----SCCCEEECCCCSS----------SC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEEecCC----------CC-----------------------
Confidence 47889999999996 8999999999998 6788888743210 01
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccc-ccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEF-ERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~-E~San~lDLRF 300 (610)
+. -=||.|+|.+.+.|......++|..+ .-.+..|-+++
T Consensus 53 --------~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 92 (106)
T 2dgp_A 53 --------MH-KGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 92 (106)
T ss_dssp --------SC-CSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred --------Cc-ceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEE
Confidence 00 13899999999999999999999875 22344454444
No 90
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.42 E-value=0.32 Score=41.29 Aligned_cols=71 Identities=17% Similarity=0.284 Sum_probs=57.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...+|..+|+.| |.|.+|.|.... .|.
T Consensus 23 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~~~i~~~~-----------~g~---------------------- 64 (114)
T 1x5o_A 23 QDPTNLYISNLPLS-MDEQELENMLKPF----GQVISTRILRDS-----------SGT---------------------- 64 (114)
T ss_dssp CCTTEEEEESCCTT-CCHHHHHHTTTTT----SCEEEEEEEECS-----------SSC----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEECC-----------CCC----------------------
Confidence 46789999999996 8999999999876 789999886531 011
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
---||.|+|.+.+.|......++|..+..
T Consensus 65 ----------~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 65 ----------SRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp ----------EEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred ----------cceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 12489999999999999999999999854
No 91
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=93.33 E-value=0.18 Score=42.76 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=59.7
Q ss_pred CCCCceeEEeccCCCcc------chhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCC
Q 007265 172 DNETHRLAIVNMDWRHV------KAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDED 245 (610)
Q Consensus 172 ~~~T~RlAvvN~DWD~i------~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~ 245 (610)
...+++|=|-||.| .+ .-.+|..+|+.| |.|.+|.|-. . .|.+
T Consensus 12 ~~~~~~l~V~nLp~-~~~~~~~~t~~~l~~~F~~~----G~v~~v~i~~-~-----------~g~~-------------- 60 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQ-VGPDRLEKLKNVIHKIFSKF----GKITNDFYPE-E-----------DGKT-------------- 60 (105)
T ss_dssp CSCCSEEEEESCCC-CCTTTTTHHHHHHHHHHGGG----SCEEEEECCC-B-----------TTBS--------------
T ss_pred CCCCCEEEEeCCCc-chhhhhHHHHHHHHHHHhcC----CCEEEEEeeC-C-----------CCCe--------------
Confidence 35688999999999 55 568999999887 7899987641 1 1211
Q ss_pred chhhhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccc-ccccccc
Q 007265 246 NDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSN-KLDLRFI 301 (610)
Q Consensus 246 ~e~~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San-~lDLRFV 301 (610)
-=||.|+|.+.+.|...-..++|..+. +. .|-+.+.
T Consensus 61 ------------------~G~afV~f~~~~~A~~Ai~~l~g~~~~--g~~~l~V~~a 97 (105)
T 2nlw_A 61 ------------------KGYIFLEYASPAHAVDAVKNADGYKLD--KQHTFRVNLF 97 (105)
T ss_dssp ------------------CCEEEEEECSSSHHHHHHHHCSSEECS--TTCEEEEECS
T ss_pred ------------------eeEEEEEECCHHHHHHHHHHhCCcccC--CCceEEEEEc
Confidence 138999999999999999999999886 33 4544443
No 92
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=93.18 E-value=0.19 Score=43.31 Aligned_cols=68 Identities=25% Similarity=0.350 Sum_probs=56.6
Q ss_pred CceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHHH
Q 007265 175 THRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKL 254 (610)
Q Consensus 175 T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~L 254 (610)
+.+|=|-||.|+ +.-.||..+|+.| |.|.+|.|.... .|
T Consensus 5 ~~~lfV~nLp~~-~te~~L~~~F~~~----G~v~~v~i~~d~-----------~~------------------------- 43 (115)
T 4f25_A 5 SGNIFIKNLDKS-IDNKALYDTFSAF----GNILSCKVVCDE-----------NG------------------------- 43 (115)
T ss_dssp CCEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEEEET-----------TE-------------------------
T ss_pred CCEEEECCCCCC-CCHHHHHHHHhcc----CCEEEEEEeecC-----------CC-------------------------
Confidence 567999999996 8999999999988 899999986421 00
Q ss_pred HHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 255 RAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 255 R~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
- -=||.|+|.+.+.|.....+++|..+.-
T Consensus 44 -------~-kg~afV~f~~~~~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 44 -------S-KGYGFVHFETQEAAERAIEKMNGMLLND 72 (115)
T ss_dssp -------E-EEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred -------C-CceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 0 1389999999999999999999998864
No 93
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=93.14 E-value=0.26 Score=42.62 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=63.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|....-|+
T Consensus 33 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~v~~v~i~~~~~g~--------------------------------- 74 (124)
T 2kt5_A 33 ETGAKLLVSNLDFG-VSDADIQELFAEF----GTLKKAAVDYDRSGR--------------------------------- 74 (124)
T ss_dssp SSCEEEEEESCCSS-CCHHHHHHHHHTT----SCCSEEEEECCSSSS---------------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEEECCCCC---------------------------------
Confidence 57899999999986 8899999999987 788999885432110
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccccCC
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPD 303 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFVPD 303 (610)
.--||.|+|.+.+.|......++|..+. +..|-+++...
T Consensus 75 ----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a~~ 113 (124)
T 2kt5_A 75 ----------SLGTADVHFERRADALKAMKQYKGVPLD--GRPMDIQLVAS 113 (124)
T ss_dssp ----------CCSEEEEEESSHHHHHHHHHHHTTEESS--SCEEEEEEECC
T ss_pred ----------EeeEEEEEECCHHHHHHHHHHcCCCEEC--CcEEEEEEeCC
Confidence 0238999999999999999999999875 46666666544
No 94
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.05 E-value=0.36 Score=40.31 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=59.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| | |.+|.|..... .|
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----g-i~~v~i~~~~~----------~g----------------------- 53 (103)
T 2dng_A 13 EPPYTAYVGNLPFN-TVQGDIDAIFKDL----S-IRSVRLVRDKD----------TD----------------------- 53 (103)
T ss_dssp SSCEEEEEESCCTT-CCHHHHHHHTTTS----C-EEEEEEEECSS----------SC-----------------------
T ss_pred CCCeEEEEeCCCCC-CCHHHHHHHHHhC----C-ceEEEEeecCC----------CC-----------------------
Confidence 57899999999997 8999999999988 4 99999865311 00
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
+ --=||.|+|.+.+.|.... +++|..+.- ..|-+++
T Consensus 54 --------~-~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~V~~ 89 (103)
T 2dng_A 54 --------K-FKGFCYVEFDEVDSLKEAL-TYDGALLGD--RSLRVDI 89 (103)
T ss_dssp --------S-EEEEEEEEESSHHHHHHHG-GGTTCEETT--EECEEEE
T ss_pred --------c-cceEEEEEECCHHHHHHHH-hhCCCeECC--eEEEEEE
Confidence 0 1238999999999999999 999988753 4444443
No 95
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.03 E-value=0.52 Score=38.91 Aligned_cols=78 Identities=8% Similarity=0.158 Sum_probs=59.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|-
T Consensus 8 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~~---------------------- 50 (99)
T 2dgs_A 8 SKSNKIFVGGIPHN-CGETELREYFKKF----GVVTEVVMIYDAE----------KQR---------------------- 50 (99)
T ss_dssp SSCCEEEEESCCSS-CCHHHHHHHHSSS----SCEEEEEECCCTT----------TCS----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEeCCC----------CCC----------------------
Confidence 47899999999997 8999999999987 7899998854210 010
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
.-=||.|+|.+.+.|..... ++|..+. +..|-+++
T Consensus 51 ----------~~g~afV~f~~~~~a~~A~~-~~~~~~~--g~~l~V~~ 85 (99)
T 2dgs_A 51 ----------PRGFGFITFEDEQSVDQAVN-MHFHDIM--GKKVEVKR 85 (99)
T ss_dssp ----------CCSEEEEEESSHHHHHHHHH-HCCCBSS--SCBCEEEE
T ss_pred ----------CCceEEEEECCHHHHHHHHH-hCCCEEC--CeEEEEEE
Confidence 01389999999999999998 9998875 34444443
No 96
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=93.01 E-value=0.35 Score=40.85 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=56.3
Q ss_pred CceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHHH
Q 007265 175 THRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKL 254 (610)
Q Consensus 175 T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~L 254 (610)
..+|=|-||.|+ +.-.||..+|+.| |.|.+|.|.+... .|.
T Consensus 19 gt~lfV~nLp~~-~te~~L~~~F~~~----G~I~~v~i~~d~~----------tg~------------------------ 59 (99)
T 4fxv_A 19 GTNLIVNYLPQN-MTQDELRSLFSSI----GEVESAKLIRDKV----------AGH------------------------ 59 (99)
T ss_dssp CSEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEEEEECSS----------SCC------------------------
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEeEeeecCC----------CCc------------------------
Confidence 457999999995 8999999999987 7899999865210 111
Q ss_pred HHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 255 RAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 255 R~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
. -=||.|+|.+.+.|......++|..+.-
T Consensus 60 -------~-kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 60 -------S-LGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp -------E-EEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred -------c-cccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 1 2489999999999999999999998853
No 97
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=93.01 E-value=0.52 Score=39.05 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=56.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEE--------EEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCC
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILS--------VAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDE 244 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~--------V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~ 244 (610)
..+++|-|.||.|+ +...||..+|+.| |.|.+ |.|....- .|
T Consensus 11 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~----------~g--------------- 60 (99)
T 2la6_A 11 SDNNTIFVQGLGEN-VTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRE----------TG--------------- 60 (99)
T ss_dssp CCCSEEEEECCCSS-CCHHHHHHHHTTT----SCBCEETTTTEESEEEEECTT----------TC---------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHh----CCEeeccccccccEEEEecCC----------CC---------------
Confidence 57899999999997 8999999999976 67777 66654210 01
Q ss_pred CchhhhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 245 DNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 245 ~~e~~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
+. .-||.|+|.+.+.|......++|..+.
T Consensus 61 ----------------~~-~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 61 ----------------KL-KGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp ----------------SE-EEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred ----------------Ce-eeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 11 248999999999999999999999876
No 98
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=92.95 E-value=0.41 Score=41.71 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=57.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.++ +...||..+|+.| |.|.+|.|.+... .|-
T Consensus 61 ~~~~~l~v~nlp~~-~~~~~l~~~f~~~----G~i~~v~i~~~~~----------~~~---------------------- 103 (140)
T 2ku7_A 61 TTKRVLYVGGLAEE-VDDKVLHAAFIPF----GDITDIQIPLDYE----------TEK---------------------- 103 (140)
T ss_dssp SSCCEEEEECCCTT-CCHHHHHHHHGGG----SCEEEEECCCCTT----------TCC----------------------
T ss_pred CCCcEEEEEeCCCC-CCHHHHHHHHHhc----CCEEEEEEeecCC----------CCC----------------------
Confidence 47899999999995 8999999999988 7899988754310 010
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
.--||.|+|.+.+.|......++|..+.
T Consensus 104 ----------~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 104 ----------HRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp ----------CCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred ----------cCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 1238999999999999999999998876
No 99
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=92.80 E-value=0.33 Score=42.62 Aligned_cols=79 Identities=18% Similarity=0.232 Sum_probs=61.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.| ++...||..+|+.| |.|.+|.|...... |
T Consensus 40 ~~~~~l~V~nLp~-~~~~~~l~~~F~~~----G~i~~v~i~~~~~~----------~----------------------- 81 (139)
T 1u6f_A 40 DVLRNLMVNYIPT-TVDEVQLRQLFERY----GPIESVKIVCDRET----------R----------------------- 81 (139)
T ss_dssp TTTSEEEEESCST-TCCHHHHHHHHHHH----SCEEEEEEEEETTT----------T-----------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhc----CCeEEEEEEEcCCC----------C-----------------------
Confidence 5789999999999 58899999999998 78999988542110 0
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
..-=||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 82 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 118 (139)
T 1u6f_A 82 ---------QSRGYGFVKFQSGSSAQQAIAGLNGFNIL--NKRLKVAL 118 (139)
T ss_dssp ---------EEEEEEEEEESSHHHHHHHHHHTTTEECS--SCEEEEEE
T ss_pred ---------CcceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEE
Confidence 01248999999999999999999998876 34444443
No 100
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.66 E-value=0.18 Score=42.75 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=58.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceE--------EEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCC
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQIL--------SVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDE 244 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~--------~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~ 244 (610)
..+++|=|.||.|+ +...||..+|+.| |.|. .|.|+..-. .|
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~----------~g--------------- 62 (113)
T 2cpe_A 13 SDNSAIYVQGLNDS-VTLDDLADFFKQC----GVVKMNKRTGQPMIHIYLDKE----------TG--------------- 62 (113)
T ss_dssp CCCCEEEEECCCTT-CCHHHHHHHHTTT----SCBCBCSSSCCBSEECCBCTT----------TC---------------
T ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHhc----CCEeEccccCccCEEEEEeCC----------CC---------------
Confidence 47899999999974 7889999999987 5666 466653200 00
Q ss_pred CchhhhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 245 DNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 245 ~~e~~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
+ ..=||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 63 ----------------~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~ 99 (113)
T 2cpe_A 63 ----------------K-PKGDATVSYEDPPTAKAAVEWFDGKDFQ--GSKLKVSL 99 (113)
T ss_dssp ----------------S-BCSEEEEEBSSHHHHHHHHHHHTTCEET--TEECEEEC
T ss_pred ----------------C-eeeEEEEEECCHHHHHHHHHHcCCCccC--CCEEEEEE
Confidence 0 1248999999999999999999999886 34444443
No 101
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.41 E-value=0.25 Score=42.19 Aligned_cols=69 Identities=29% Similarity=0.455 Sum_probs=57.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|.... | |+
T Consensus 27 ~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~-~----------~~---------------------- 68 (109)
T 2err_A 27 SQPKRLHVSNIPFR-FRDPDLRQMFGQF----GKILDVEIIFNE-R----------GS---------------------- 68 (109)
T ss_dssp TCCCEEEEESCCTT-CCHHHHHHHGGGT----CCCSCEEECCBT-T----------BC----------------------
T ss_pred CCCCEEEEECCCCc-CCHHHHHHHHHhc----CCEEEEEEEECC-C----------CC----------------------
Confidence 47889999999996 9999999999987 688888885421 0 11
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
--||.|+|.+.+.|......++|..+.
T Consensus 69 -----------kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 69 -----------KGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp -----------TTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred -----------ceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 138999999999999999999999875
No 102
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=92.32 E-value=0.27 Score=39.42 Aligned_cols=72 Identities=19% Similarity=0.316 Sum_probs=56.6
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+++|-|.||.|+ +...||..+|+.| |.|.+|.|.+....
T Consensus 3 ~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~~~i~~~~~~----------------------------------- 42 (88)
T 4a8x_A 3 KPTKVHIGRLTRN-VTKDHIMEIFSTY----GKIKMIDMPVERMH----------------------------------- 42 (88)
T ss_dssp CCCEEEEECCCTT-CCHHHHHHHHHTT----SCEEEEECCEETTE-----------------------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhC----CCEEEEEEEeCCCC-----------------------------------
Confidence 4678999999987 6889999999876 78888887542210
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
.+...-||.|+|.+.+.|......++|..+.-
T Consensus 43 ------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 43 ------PHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp ------EEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ------CCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 00123489999999999999999999998863
No 103
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.32 E-value=0.32 Score=40.71 Aligned_cols=78 Identities=12% Similarity=0.264 Sum_probs=60.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 14 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~v~~v~i~~~~~----------~g----------------------- 55 (105)
T 2dh8_A 14 DEIGKLFVGGLDWS-TTQETLRSYFSQY----GEVVDCVIMKDKT----------TN----------------------- 55 (105)
T ss_dssp SSSSEECCBSCCTT-CCHHHHHHHHHTT----SCEEEEEEEECSS----------SC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEeeCCC----------CC-----------------------
Confidence 57899999999997 8999999999987 7899998865310 01
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
.--=||.|+|.+.+.|...... +|..+.- ..|-+++
T Consensus 56 ---------~~~g~afV~f~~~~~a~~a~~~-~~~~~~g--~~l~V~~ 91 (105)
T 2dh8_A 56 ---------QSRGFGFVKFKDPNCVGTVLAS-RPHTLDG--RNIDPKP 91 (105)
T ss_dssp ---------CEEEEEEEEESSTTHHHHHHHH-CSEEETT--EEEBCCC
T ss_pred ---------CcceEEEEEECCHHHHHHHHHh-CCCeECC--EEEEEEE
Confidence 0123899999999999999998 9987764 3444433
No 104
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=92.30 E-value=0.36 Score=41.61 Aligned_cols=77 Identities=23% Similarity=0.297 Sum_probs=59.7
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 35 ~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~------------------------ 75 (124)
T 2jwn_A 35 DKRSVYVGNVDYG-STAQDLEAHFSSC----GSINRITILCDKF----------SG------------------------ 75 (124)
T ss_dssp HHTEEEEEEECTT-CCHHHHHHHHHTT----SCEEEEEEEEECT----------TS------------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEecCC----------CC------------------------
Confidence 5789999999997 8999999999987 7899998864210 01
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
.-.=||.|+|.+.+.|.... +++|..+.- ..|-+.+
T Consensus 76 --------~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~V~~ 111 (124)
T 2jwn_A 76 --------HPKGYAYIEFAERNSVDAAV-AMDETVFRG--RTIKVLP 111 (124)
T ss_dssp --------SCEEEEEEEESSHHHHHHHH-TTTTCEETT--EECEEEE
T ss_pred --------CcccEEEEEECCHHHHHHHH-hcCCCeECC--eEEEEEE
Confidence 01348999999999999999 899998753 4444443
No 105
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=92.30 E-value=0.18 Score=42.23 Aligned_cols=71 Identities=10% Similarity=0.057 Sum_probs=53.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|+ +...||..+|+.| | |.+|.|....- ..|
T Consensus 17 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G-i~~v~i~~~~~---------~~g----------------------- 58 (100)
T 2j76_E 17 SPPYTAFLGNLPYD-VTEESIKEFFRGL----N-ISAVRLPREPS---------NPE----------------------- 58 (100)
T ss_dssp ---CEEEESCCSSC-CSSSHHHHHSCSS----C-EEEEECSCCTT---------TTC-----------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhc----C-CeEEEEEecCC---------cCC-----------------------
Confidence 57899999999997 9999999999988 6 99998753210 001
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
+. --||.|+|.+.+.|.... .++|..+.-
T Consensus 59 --------~~-~g~afV~f~~~~~a~~Ai-~l~g~~~~g 87 (100)
T 2j76_E 59 --------RL-KGFGYAEFEDLDSLLSAL-SLNEESLGN 87 (100)
T ss_dssp --------CC-CSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred --------cc-CeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 11 138999999999999999 999998753
No 106
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=92.29 E-value=0.18 Score=46.43 Aligned_cols=74 Identities=14% Similarity=0.296 Sum_probs=61.3
Q ss_pred CceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHHH
Q 007265 175 THRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKL 254 (610)
Q Consensus 175 T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~L 254 (610)
+++|=|-||.|.++...+|..+|+.| |.|.+|.|.... .
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~----G~i~~v~i~~~~-----------~-------------------------- 41 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVY----GDVQRVKILFNK-----------K-------------------------- 41 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTT----CCCSEEECSTTC-----------S--------------------------
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEEeCC-----------C--------------------------
Confidence 58899999999999999999999987 678888876431 0
Q ss_pred HHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 255 RAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 255 R~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
=||.|+|.+.+.|......++|..+. +..|-+.+.
T Consensus 42 ----------g~afV~f~~~~~a~~A~~~l~~~~~~--g~~l~v~~a 76 (198)
T 1qm9_A 42 ----------ENALVQMADGNQAQLAMSHLNGHKLH--GKPIRITLS 76 (198)
T ss_dssp ----------SCCEEECTTTHHHHHHHHHHTTCCCS--SCCCEEEEC
T ss_pred ----------CEEEEEECCHHHHHHHHHHhCCCeec--CeEEEEEEe
Confidence 17999999999999999999998884 466666554
No 107
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.29 E-value=0.56 Score=38.76 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=56.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.|+ ++...||..+|+.| |.|.+|.|- +.
T Consensus 13 ~~~~~l~V~n~---~~t~~~l~~~F~~~----G~i~~v~i~----------------~~--------------------- 48 (97)
T 1x5p_A 13 RKGNTLYVYGE---DMTPTLLRGAFSPF----GNIIDLSMD----------------PP--------------------- 48 (97)
T ss_dssp CCCSEEEEECS---SCCHHHHHHHHTTT----SCEEEEEEE----------------TT---------------------
T ss_pred CCCCEEEEcCC---CCCHHHHHHHHhhC----CCEEEEEec----------------CC---------------------
Confidence 36789999994 78999999999877 789999881 11
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
-=||.|+|.+.+.|......++|..+. +..|-+.|
T Consensus 49 -----------~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~v~~ 83 (97)
T 1x5p_A 49 -----------RNCAFVTYEKMESADQAVAELNGTQVE--SVQLKVNI 83 (97)
T ss_dssp -----------TTEEEEEESSHHHHHHHHHHTTTEEET--TEEEEEEC
T ss_pred -----------CCEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEE
Confidence 127999999999999999999999884 45555444
No 108
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=92.17 E-value=0.22 Score=43.64 Aligned_cols=68 Identities=15% Similarity=0.049 Sum_probs=56.2
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCC-ceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG-QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG-~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
...||=|-||.|+ ++..||..+|+.| | .|..|.|+.-. +.
T Consensus 27 ~~~~l~VgnLp~~-~te~dL~~~F~~~----G~~v~~v~i~~~~-------------~r--------------------- 67 (111)
T 2jvr_A 27 KRYRITMKNLPEG-CSWQDLKDLAREN----SLETTFSSVNTRD-------------FD--------------------- 67 (111)
T ss_dssp CCEEEEEECSSCC-CCHHHHHHHHHHH----TCCCSEEECSSCS-------------SS---------------------
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHh----CCeeEEEEEEcCC-------------CC---------------------
Confidence 4579999999997 7999999999988 5 78888885310 11
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERS 292 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~S 292 (610)
=||.|+|.+.+.|......+||.++.-.
T Consensus 68 ------------GfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 68 ------------GTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp ------------CCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred ------------CEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 1899999999999999999999998643
No 109
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=92.14 E-value=0.4 Score=42.49 Aligned_cols=80 Identities=24% Similarity=0.243 Sum_probs=62.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|-||.|+ +...+|..+|+.| |.|.+|.|.+..-| -+
T Consensus 93 ~~~~~l~v~nl~~~-~t~~~l~~~F~~~----G~i~~v~~~~~~~g-----------~~--------------------- 135 (175)
T 3nmr_A 93 VEDRKLFIGMISKK-CTENDIRVMFSSF----GQIEECRILRGPDG-----------LS--------------------- 135 (175)
T ss_dssp GGGSEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEEECTTS-----------CE---------------------
T ss_pred CCCCeEEEcCCCCc-CCHHHHHHHHHhC----CCEEEEEEEECCCC-----------CE---------------------
Confidence 36789999999997 8899999999977 67999999764222 11
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccc-cccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERS-SNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~S-an~lDLRF 300 (610)
--||.|+|.+.+.|......++|..+--. +..|-++|
T Consensus 136 -----------~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 136 -----------RGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp -----------EEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred -----------EEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 24899999999999999999999876542 34444443
No 110
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=92.11 E-value=0.28 Score=43.60 Aligned_cols=67 Identities=19% Similarity=0.352 Sum_probs=56.4
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCC-------ceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCc
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG-------QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDN 246 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG-------~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~ 246 (610)
.+++|=|-||.|+ +...+|..+|+.|....| .|.+|.+..+
T Consensus 3 ~~~~l~V~nLp~~-~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------------------------------- 50 (172)
T 2g4b_A 3 SARRLYVGNIPFG-ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------------------------------- 50 (172)
T ss_dssp GGGEEEEESCCTT-CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-------------------------------
T ss_pred cccEEEEcCCCcc-cCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-------------------------------
Confidence 5789999999996 899999999999965445 7888887543
Q ss_pred hhhhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 247 DEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 247 e~~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
-=||.|+|.+.+.|.... +++|+.+.
T Consensus 51 -----------------~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 51 -----------------KNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp -----------------TTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred -----------------CCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 128999999999999999 99999874
No 111
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=92.11 E-value=0.61 Score=41.15 Aligned_cols=79 Identities=15% Similarity=0.315 Sum_probs=61.6
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
++++|=|-||.|+ +...+|..+|+.| |.|.+|.|.+..- .|
T Consensus 2 ~~~~l~v~nlp~~-~~~~~l~~~f~~~----G~i~~v~i~~~~~----------~~------------------------ 42 (168)
T 1b7f_A 2 SNTNLIVNYLPQD-MTDRELYALFRAI----GPINTCRIMRDYK----------TG------------------------ 42 (168)
T ss_dssp CCSEEEEECCCTT-CCHHHHHHHHHTT----SCEEEEECCEETT----------TT------------------------
T ss_pred CccEEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEEEeCC----------CC------------------------
Confidence 5689999999995 8999999999987 6899998865310 01
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
.-.-||.|+|.+.+.|......++|..+. +..|-+++.
T Consensus 43 --------~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~ 80 (168)
T 1b7f_A 43 --------YSYGYAFVDFTSEMDSQRAIKVLNGITVR--NKRLKVSYA 80 (168)
T ss_dssp --------EECSEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred --------ccceEEEEEECCHHHHHHHHHhcCCCEeC--CcEEEEEec
Confidence 01248999999999999999999999885 445555554
No 112
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=92.08 E-value=0.68 Score=40.81 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=62.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|-||.+ .+...+|..+|+.| |.|.+|.|.+..- .|-
T Consensus 87 ~~~~~l~v~nl~~-~~t~~~l~~~f~~~----G~i~~~~i~~~~~----------~~~---------------------- 129 (168)
T 1b7f_A 87 IKDTNLYVTNLPR-TITDDQLDTIFGKY----GSIVQKNILRDKL----------TGR---------------------- 129 (168)
T ss_dssp TTTCEEEEESCCT-TCCHHHHHHHHTSS----SCEEEEEEEECTT----------TCC----------------------
T ss_pred CCCCCEEEeCCCC-CCCHHHHHHhhhcC----CcEEEEEEEEcCC----------CCC----------------------
Confidence 3678999999998 68999999999866 6899999876320 010
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
. --||.|+|.+.+.|......++|..+.-....|-++|
T Consensus 130 ---------~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 130 ---------P-RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp ---------E-EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred ---------c-ceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 1 2489999999999999999999998865545554443
No 113
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=92.07 E-value=0.5 Score=38.00 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=55.8
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+++|-|.||.|+ +...||..+|+.| |.|.+|.|..... .|.
T Consensus 5 ~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~~----------------------- 46 (89)
T 3ucg_A 5 DARSIYVGNVDYG-ATAEELEAHFHGC----GSVNRVTILCDKF----------SGH----------------------- 46 (89)
T ss_dssp HHTEEEEESCCTT-CCHHHHHHHHGGG----CCEEEEEEEESCS----------SSS-----------------------
T ss_pred cCCEEEEeCCCCC-CCHHHHHHHHHhC----CCEEEEEEEecCC----------CCC-----------------------
Confidence 4689999999987 6899999999987 7899998864310 010
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
..=||.|+|.+.+.|.... .++|..+.-
T Consensus 47 ---------~~g~afV~f~~~~~a~~a~-~~~g~~~~g 74 (89)
T 3ucg_A 47 ---------PKGFAYIEFSDKESVRTSL-ALDESLFRG 74 (89)
T ss_dssp ---------CCEEEEEEESSTHHHHHHG-GGTTCEETT
T ss_pred ---------cceEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 0248999999999999999 999998753
No 114
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.06 E-value=0.27 Score=40.17 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=55.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.|-+ .|..|.|-
T Consensus 6 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~---vv~~~~~~--------------------------------------- 42 (93)
T 2cqh_A 6 SGMNKLYIGNLSPA-VTADDLRQLFGDRKL---PLAGQVLL--------------------------------------- 42 (93)
T ss_dssp CCCCCEEEECCCTT-CCHHHHHHHHHHTTC---CCSSCEEE---------------------------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHcCC---ceEEEEEc---------------------------------------
Confidence 47889999999997 899999999988743 14444331
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCc-cccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDG-VEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG-~E~E~San~lDLRF 300 (610)
.-=||.|+|.+.+.|......++| +.+.- ..|-+++
T Consensus 43 ----------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l~v~~ 79 (93)
T 2cqh_A 43 ----------KSGYAFVDYPDQNWAIRAIETLSGKVELHG--KIMEVDY 79 (93)
T ss_dssp ----------ETTEEEECCSCHHHHHHHHHHHTTTCEETT--EECEEEE
T ss_pred ----------CCCEEEEEECCHHHHHHHHHHccCCeeECC--EEEEEEE
Confidence 013899999999999999999999 77753 4444443
No 115
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.98 E-value=0.53 Score=39.87 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=58.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.++++|-|.||.| ++...||..+|+.|-+....+..|.+. .|-.
T Consensus 23 ~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~--------------~g~~--------------------- 66 (115)
T 2cpx_A 23 EPNKVLYLKNLSP-RVTERDLVSLFARFQEKKGPPIQFRMM--------------TGRM--------------------- 66 (115)
T ss_dssp SCCSEEEEECCCT-TCCHHHHHHHTHHHHHSSSSCCEEEEE--------------CSSS---------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHhCCccceEEEEEcC--------------CCcc---------------------
Confidence 4789999999998 489999999999884433333444443 1111
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
-=||.|+|.+.+.|......++|..+. +..|-+.|
T Consensus 67 -----------~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~v~~ 101 (115)
T 2cpx_A 67 -----------RGQAFITFPNKEIAWQALHLVNGYKLY--GKILVIEF 101 (115)
T ss_dssp -----------CSEEEEECSSHHHHHHHHHHSTTCBCS--SCBCEEEE
T ss_pred -----------ceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEEEE
Confidence 138999999999999999999998884 55555554
No 116
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=91.88 E-value=0.73 Score=40.31 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=57.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|-||.|+ +...+|..+|+.| |.|.+|.|.+.. ..|.+
T Consensus 85 ~~~~~l~v~nl~~~-~t~~~l~~~f~~~----G~i~~~~i~~~~----------~~~~~--------------------- 128 (166)
T 3md3_A 85 DDTFNLFVGDLNVN-VDDETLRNAFKDF----PSYLSGHVMWDM----------QTGSS--------------------- 128 (166)
T ss_dssp TTCEEEEEESCCTT-CCHHHHHHHHTTS----TTEEEEEEEECT----------TTCCE---------------------
T ss_pred CCCceEEECCCCCC-CCHHHHHHHHhcc----CCeeEEEEEecC----------CCCCc---------------------
Confidence 46889999999984 6889999999766 789999987531 01111
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
--||.|+|.+.+.|......++|..+.
T Consensus 129 -----------~g~afV~f~~~~~A~~A~~~l~g~~~~ 155 (166)
T 3md3_A 129 -----------RGYGFVSFTSQDDAQNAMDSMQGQDLN 155 (166)
T ss_dssp -----------EEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred -----------ceEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 348999999999999999999999875
No 117
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.81 E-value=0.8 Score=39.18 Aligned_cols=82 Identities=26% Similarity=0.350 Sum_probs=60.0
Q ss_pred CCCceeEEeccCCCccc-----------hhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCC
Q 007265 173 NETHRLAIVNMDWRHVK-----------AVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENS 241 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~-----------A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~ 241 (610)
.+|+-|-|.|| |+... -.||..+|+.| |.|.+|.|+.- + |.
T Consensus 13 ~~s~~l~l~Nl-~~~~~~~~~~~~~~~~e~~l~~~f~~~----G~v~~v~i~~~------------~-~~---------- 64 (112)
T 2dit_A 13 RHERVVIIKNM-FHPMDFEDDPLVLNEIREDLRVECSKF----GQIRKLLLFDR------------H-PD---------- 64 (112)
T ss_dssp CSCCEEEEESS-CCTTHHHHCSHHHHHHHHHHHHHGGGT----SCCSEEEEETT------------C-TT----------
T ss_pred CCceEEEEEcC-CCHHHhccCHHHHHHHHHHHHHHHHcc----CCEeEEEEecC------------C-CC----------
Confidence 47889999999 44332 35788888766 79999988421 0 11
Q ss_pred CCCCchhhhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccccCCCCcc
Q 007265 242 DDEDNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPDTMEF 307 (610)
Q Consensus 242 e~~~~e~~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFVPDd~~F 307 (610)
=||.|+|.+.+.|......++|..|. +..|-+.|...-..|
T Consensus 65 -----------------------G~afV~f~~~~~A~~Ai~~lng~~~~--gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 65 -----------------------GVASVSFRDPEEADYCIQTLDGRWFG--GRQITAQAWDGTTDY 105 (112)
T ss_dssp -----------------------CEEEEECSCHHHHHHHHHHSTTCEET--TEECEEEECCSCCCS
T ss_pred -----------------------EEEEEEECCHHHHHHHHHHcCCCEEC--CcEEEEEEeCCCCCc
Confidence 27999999999999999999999885 566766665443444
No 118
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=91.61 E-value=0.49 Score=38.50 Aligned_cols=78 Identities=12% Similarity=0.115 Sum_probs=61.9
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+++|=|-||.|+ +...||..+|+.| + |.+|.| + . .
T Consensus 4 ~~~~l~V~nLp~~-~t~~~l~~~F~~~-~----v~~~~i-~-----------~----~---------------------- 39 (88)
T 1wg1_A 4 GSSGILVKNLPQD-SNCQEVHDLLKDY-D----LKYCYV-D-----------R----N---------------------- 39 (88)
T ss_dssp CCCCEEEESCCSS-CCHHHHHHHTCSS-C----CCCEEE-E-----------G----G----------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHhhC-C----eEEEEE-e-----------C----C----------------------
Confidence 5688999999986 7889999999998 3 666666 2 0 0
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccccCCCCcc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPDTMEF 307 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFVPDd~~F 307 (610)
--||.|+|.+.+.|......++|.++. +..|-+++-|.+..+
T Consensus 40 ----------~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~V~~a~~~~~~ 81 (88)
T 1wg1_A 40 ----------KRTAFVTLLNGEQAQNAIQMFHQYSFR--GKDLIVQLQPTDALL 81 (88)
T ss_dssp ----------GTEEEECCSCHHHHHHHHHHHTTEEET--TEEEEEEECCCCCCC
T ss_pred ----------CcEEEEEECCHHHHHHHHHHhCCCeEC--CcEEEEEEcCCCceE
Confidence 128999999999999999999999875 567777777776543
No 119
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=91.52 E-value=0.76 Score=41.10 Aligned_cols=68 Identities=24% Similarity=0.256 Sum_probs=52.8
Q ss_pred CCCceeEEeccCCCccchhh----HHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchh
Q 007265 173 NETHRLAIVNMDWRHVKAVD----LLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDE 248 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~D----L~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~ 248 (610)
.++++|=|.||.|. |+-.| |+.+|+.| |.|.+|.|..+ |..
T Consensus 27 ~p~~~LfV~nL~~~-~~e~~L~~~L~~~F~~~----G~I~~v~i~~~-------------~~~----------------- 71 (127)
T 2a3j_A 27 EPSQVVLITNINPE-VPKEKLQALLYALASSQ----GDILDIVVDLS-------------DDN----------------- 71 (127)
T ss_dssp SCCSEEEEESCCTT-SCHHHHHHHHHHHHHHH----SCEEEEEECCC-------------CSS-----------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHHhccC----CCeEEEEeccC-------------CCc-----------------
Confidence 46789999999985 66666 45678777 78988877321 211
Q ss_pred hhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 249 IDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 249 ~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
| =||.|+|.+.+.|......++|..+.
T Consensus 72 --------------r-G~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 72 --------------S-GKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp --------------C-CCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred --------------C-CEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 1 27999999999999999999998875
No 120
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.39 E-value=0.37 Score=40.97 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=55.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|....- .|-
T Consensus 23 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g~---------------------- 65 (114)
T 2cq4_A 23 RDARTVFCMQLAAR-IRPRDLEDFFSAV----GKVRDVRIISDRN----------SRR---------------------- 65 (114)
T ss_dssp HHHTEEEEESCCTT-CCHHHHHHHHTTT----SCEEEEEECCSCC----------SSS----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhC----CCEeEEEEEecCC----------CCc----------------------
Confidence 46789999999997 8999999999887 7899998853210 010
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
--=||.|+|.+.+.|.... .++|..+.
T Consensus 66 ----------~~g~afV~f~~~~~a~~A~-~l~g~~~~ 92 (114)
T 2cq4_A 66 ----------SKGIAYVEFCEIQSVPLAI-GLTGQRLL 92 (114)
T ss_dssp ----------CCCCEEEEESCGGGHHHHH-HHTTEEET
T ss_pred ----------cCcEEEEEeCcHHHHHHHH-HcCCCEeC
Confidence 0138999999999999999 99999875
No 121
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=91.37 E-value=0.31 Score=43.50 Aligned_cols=79 Identities=16% Similarity=0.281 Sum_probs=59.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|.
T Consensus 45 ~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~v~i~~~~~----------~g~---------------------- 87 (135)
T 2lea_A 45 EGMTSLKVDNLTYR-TSPDTLRRVFEKY----GRVGDVYIPRDRY----------TKE---------------------- 87 (135)
T ss_dssp GGCCCEEEECCCSS-CHHHHHHHHHGGG----SCCSEEECCCCSS----------SSS----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEecCC----------CCc----------------------
Confidence 47889999999996 8999999999987 6788887743210 000
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
. -=||.|+|.+.+.|......++|..+.- ..|-+++
T Consensus 88 ---------~-~G~afV~F~~~~~A~~Ai~~l~g~~i~g--~~l~V~~ 123 (135)
T 2lea_A 88 ---------S-RGFAFVRFHDKRDAEDAMDAMDGAVLDG--RELRVQM 123 (135)
T ss_dssp ---------C-CSCCEEECSCHHHHHHHHTTTTTCCSSS--SCCEEEE
T ss_pred ---------c-ceEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEE
Confidence 0 1389999999999999999999998753 4444443
No 122
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.37 E-value=0.53 Score=39.49 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=59.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCc-eEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQ-ILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~-i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
...++|=|.||.| ++...+|..+|+.| |. |.+|.|.+.+-+ .|..
T Consensus 6 ~~~~~l~V~nLp~-~~t~~~l~~~f~~~----G~~v~~v~i~~~~~~---------~g~~-------------------- 51 (109)
T 2dis_A 6 SGNCRLFIGGIPK-MKKREEILEEIAKV----TEGVLDVIVYASAAD---------KMKN-------------------- 51 (109)
T ss_dssp CCSEEEEEECCCT-TSCHHHHHHHHHHH----STTEEEEECCSSSCT---------TTTT--------------------
T ss_pred cCCCEEEEeCCCC-cCCHHHHHHHHHHh----cCCceEEEEEccCCC---------CCCc--------------------
Confidence 3678999999999 68999999999998 44 999988633211 0111
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcC--ccccccccccccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACD--GVEFERSSNKLDLRF 300 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecD--G~E~E~San~lDLRF 300 (610)
-=||.|+|.+.+.|......++ |..+. +..|-+.+
T Consensus 52 ------------~g~afV~f~~~~~A~~A~~~l~~g~~~~~--g~~l~V~~ 88 (109)
T 2dis_A 52 ------------RGFAFVEYESHRAAAMARRKLMPGRIQLW--GHQIAVDW 88 (109)
T ss_dssp ------------CCEEEEEESSHHHHHHHHTTTTTCCSCBT--TBCCEEEE
T ss_pred ------------CcEEEEEecCHHHHHHHHHHhhCCCceec--CCeEEEEE
Confidence 1389999999999999999997 56665 34454444
No 123
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=91.36 E-value=0.24 Score=45.10 Aligned_cols=76 Identities=18% Similarity=0.331 Sum_probs=58.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCC-------CceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCC
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKD-------GQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDED 245 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~g-------G~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~ 245 (610)
..+++|=|-||.|+ +...||..+|+.|.+.. +.|.+|.+..| .
T Consensus 2 ~~~~~l~V~nLp~~-~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~------------~----------------- 51 (198)
T 2yh0_A 2 AMARRLYVGNIPFG-ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------------K----------------- 51 (198)
T ss_dssp --CCEEEEESCCTT-CCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT------------T-----------------
T ss_pred CceeEEEEcCCCCC-CCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC------------C-----------------
Confidence 36899999999996 79999999999884333 37888887433 0
Q ss_pred chhhhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 246 NDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 246 ~e~~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
=||.|+|.+.+.|.... +++|..+.- ..|-+.+
T Consensus 52 -------------------g~afV~F~~~~~A~~Al-~l~g~~~~g--~~i~v~~ 84 (198)
T 2yh0_A 52 -------------------NFAFLEFRSVDETTQAM-AFDGIIFQG--QSLKIRR 84 (198)
T ss_dssp -------------------TEEEEEESCSHHHHHHG-GGTTEEETT--EEEEEEC
T ss_pred -------------------CEEEEEeCCHHHHHHHH-HhcCCEEcC--ceEEEeC
Confidence 28999999999999999 899998753 3444443
No 124
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=91.17 E-value=0.88 Score=41.93 Aligned_cols=79 Identities=13% Similarity=0.227 Sum_probs=62.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|-||.|+ +...||..+|+.| |.|.+|.|.+..- .|
T Consensus 123 ~~~~~l~v~nlp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~~----------~g----------------------- 164 (216)
T 2qfj_A 123 RAFNRIYVASVHQD-LSDDDIKSVFEAF----GKIKSATLARDPT----------TG----------------------- 164 (216)
T ss_dssp TTSCEEEEECCCTT-CCHHHHHHHHTTS----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCCcEEEEeCCCCc-CCHHHHHHHHhcc----CCeeEEEEEecCC----------CC-----------------------
Confidence 46789999999987 8999999999877 7899999975310 01
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
+. .-||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 165 --------~~-~g~afV~F~~~~~A~~A~~~l~g~~~~--g~~i~V~~ 201 (216)
T 2qfj_A 165 --------KH-KGYGFIEYEKAQSSQDAVSSMNLFDLG--GQYLRVGK 201 (216)
T ss_dssp --------CE-EEEEEEEESSHHHHHHHHHHHTTCBCS--SSBCEEEE
T ss_pred --------Cc-CceEEEEecCHHHHHHHHHHccCCEeC--CcEEEEEE
Confidence 11 348999999999999999999999875 44555544
No 125
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.13 E-value=0.46 Score=38.67 Aligned_cols=69 Identities=10% Similarity=0.245 Sum_probs=54.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
...++|=|.||.|+ +...||..+|+.| + |.+|.|....- |-+
T Consensus 8 ~~~~~l~v~nLp~~-~t~~~l~~~F~~~-~----i~~v~i~~~~~-----------g~~--------------------- 49 (91)
T 2dgw_A 8 TTCHTVKLRGAPFN-VTEKNVMEFLAPL-K----PVAIRIVRNAH-----------GNK--------------------- 49 (91)
T ss_dssp CCCCEEEEECCCSS-CCHHHHHHHHTTS-C----CSEEEEEECTT-----------SCE---------------------
T ss_pred CCccEEEEECCCCC-CCHHHHHHHHhhC-C----ceEEEEEECCC-----------CCC---------------------
Confidence 36789999999997 8899999999998 3 66777754211 110
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
-=||.|+|.+.+.|..... ++|..+.-
T Consensus 50 -----------~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 50 -----------TGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp -----------EEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred -----------ceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 2489999999999999999 99988753
No 126
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=90.96 E-value=0.64 Score=43.54 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=63.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|....- |..
T Consensus 86 ~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~I~~v~i~~d~~-----------g~~--------------------- 128 (177)
T 2f3j_A 86 ETGAKLLVSNLDFG-VSDADIQELFAEF----GTLKKAAVDYDRS-----------GRS--------------------- 128 (177)
T ss_dssp TTCEEEEEECCCSC-CCHHHHHHHHHHT----SCCSEEEECCCTT-----------SSC---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEECCC-----------CCE---------------------
Confidence 47789999999986 8899999999987 6788888854211 111
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccccCC
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPD 303 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFVPD 303 (610)
-=||.|+|.+.+.|......++|..+. +..|-+.|...
T Consensus 129 -----------kG~afV~F~~~~~A~~Ai~~lng~~l~--Gr~l~V~~a~~ 166 (177)
T 2f3j_A 129 -----------LGTADVHFERRADALKAMKQYKGVPLD--GRPMDIQLVAS 166 (177)
T ss_dssp -----------SCCEEEEESCHHHHHHHHHHSTTCBCS--SSBCEEEEESS
T ss_pred -----------eeEEEEEeCCHHHHHHHHHHhCCCEEC--CEEEEEEEecC
Confidence 137999999999999999999999775 46666666544
No 127
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=90.72 E-value=0.25 Score=48.14 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=64.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|-||.|+-....||..+|+.| |.|.+|.|.+..- |.+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~----G~i~~v~i~~~~~-----------g~~--------------------- 225 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAV----HSPTFCQLACGQD-----------GQL--------------------- 225 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSS----SCCSEEEEEECSS-----------CCE---------------------
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCC----CCeEEEEEEECCC-----------CCc---------------------
Confidence 4678999999999866889999999987 7899999876422 211
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
--||.|+|.+.+.|......++|..+ .+..|-+.|.
T Consensus 226 -----------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a 261 (284)
T 3smz_A 226 -----------KGFAVLEYETAEMAEEAQQQADGLSL--GGSHLRVSFC 261 (284)
T ss_dssp -----------EEEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred -----------ccEEEEEeCCHHHHHHHHHHhCCCcc--CCeEEEEEEe
Confidence 35999999999999999999999998 3445555554
No 128
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=90.69 E-value=0.65 Score=41.22 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=57.5
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+++|-|-||.| ++...||..+|+.| |.|.+|.|.+..- .|-
T Consensus 93 ~~~~l~v~nlp~-~~t~~~l~~~f~~~----G~v~~v~i~~~~~----------~g~----------------------- 134 (172)
T 2g4b_A 93 GAHKLFIGGLPN-YLNDDQVKELLTSF----GPLKAFNLVKDSA----------TGL----------------------- 134 (172)
T ss_dssp TTTCEEEECCCT-TCCHHHHHHHHHTT----SCEEEEEEEECTT----------TCS-----------------------
T ss_pred CCCEEEEEcCCC-cCCHHHHHHHHHhc----CCceEEEEEecCC----------CCC-----------------------
Confidence 478999999999 78999999999977 7899999876410 010
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
.--||.|+|.+.+.|......++|..+.
T Consensus 135 ---------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (172)
T 2g4b_A 135 ---------SKGYAFCEYVDINVTDQAIAGLNGMQLG 162 (172)
T ss_dssp ---------EEEEEEEEESSTTHHHHHHHHHTTCEET
T ss_pred ---------cceEEEEEeCCHHHHHHHHHHcCCCEEC
Confidence 1248999999999999999999998885
No 129
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.65 E-value=0.39 Score=38.93 Aligned_cols=72 Identities=11% Similarity=0.114 Sum_probs=55.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|+ ++..||..+|+.| |.|.+|.|... +
T Consensus 3 ~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~--------------~---------------------- 41 (88)
T 1wf0_A 3 SGSSGVFVGRCTGD-MTEDELREFFSQY----GDVMDVFIPKP--------------F---------------------- 41 (88)
T ss_dssp SCCCEEEEESCCSS-SCHHHHHHHSTTT----SCCCEEECCSS--------------C----------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHc----CCeeEEEEecC--------------C----------------------
Confidence 36799999999987 8899999999887 77888887521 1
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
--||.|+|.+.+.|.. +.|..+...+..|.+.+
T Consensus 42 -----------~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 42 -----------RAFAFVTFADDQIAQS----LCGEDLIIKGISVHISN 74 (88)
T ss_dssp -----------CSCCEEECSCHHHHHH----TTTCEEEETTEEEEEEC
T ss_pred -----------CCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEe
Confidence 1289999999999964 67776655555555554
No 130
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.44 E-value=0.83 Score=39.05 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=54.9
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+++|=|.||.|+ ++..+|..+|+.| |.|.+|.|-.-.-|+
T Consensus 10 ~~~~lfV~~Lp~~-~te~~L~~~F~~~----G~v~~v~i~~d~~g~---------------------------------- 50 (103)
T 1s79_A 10 KNRSVYIKGFPTD-ATLDDIKEWLEDK----GQVLNIQMRRTLHKA---------------------------------- 50 (103)
T ss_dssp GGGCEEEECCCTT-CCHHHHHHHHHTS----SCEEEEEEECCCTTS----------------------------------
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHhhc----CCEEEEEEEECCCCC----------------------------------
Confidence 5688999999998 8999999999976 789999985311011
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
.| =||.|+|.+.+.|..... ++|+.|.-
T Consensus 51 --------~r-G~aFV~F~~~e~a~~Ai~-~~~~~~~g 78 (103)
T 1s79_A 51 --------FK-GSIFVVFDSIESAKKFVE-TPGQKYKE 78 (103)
T ss_dssp --------CC-CEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred --------Cc-cEEEEEECCHHHHHHHHH-cCCCEECC
Confidence 01 279999999999999998 89987753
No 131
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.41 E-value=0.39 Score=39.82 Aligned_cols=75 Identities=21% Similarity=0.317 Sum_probs=54.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|+ +.-.||..+|+.| |.| .|..- ..|
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----g~v---~~~~~-----------~~g----------------------- 50 (101)
T 2fc9_A 13 GESKTLVLSNLSYS-ATEETLQEVFEKA----TFI---KVPQN-----------QNG----------------------- 50 (101)
T ss_dssp CCCSEEEEESCCTT-CCHHHHHHHCSSC----SEE---ECCBC-----------SSS-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhC----CEE---EEEEC-----------CCC-----------------------
Confidence 47899999999998 9999999999876 333 11100 000
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
+ .-=||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 51 --------~-~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~ 87 (101)
T 2fc9_A 51 --------K-SKGYAFIEFASFEDAKEALNSCNKREIE--GRAIRLEL 87 (101)
T ss_dssp --------C-BCSEEEEECSSHHHHHHHHHHTSSEEET--TEEEEEEE
T ss_pred --------C-EeeEEEEEECCHHHHHHHHHHhCCCEeC--CeEEEEEE
Confidence 0 1238999999999999999999998887 44444444
No 132
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.12 E-value=1.5 Score=36.37 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=57.4
Q ss_pred CCCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 172 DNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 172 ~~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
...+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 12 ~~~~~~l~v~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g---------------------- 54 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWK-TTEQDLKEYFSTF----GEVLMVQVKKDLK----------TG---------------------- 54 (103)
T ss_dssp CCCCCCEEEESCCSS-CCHHHHHHHHGGG----SCEEEEEEEECSS----------SC----------------------
T ss_pred cCCCCEEEEEcCCCc-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CC----------------------
Confidence 357899999999995 8999999999987 7899998854210 01
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
.---||.|+|.+.+.|.....+ |.. ..+..|.+++-
T Consensus 55 ----------~~~g~afV~f~~~~~a~~A~~~--~~~--~~g~~l~v~~a 90 (103)
T 2cqg_A 55 ----------HSKGFGFVRFTEYETQVKVMSQ--RHM--IDGRWCDCKLP 90 (103)
T ss_dssp ----------SEEEEEEEEESSHHHHHHHHHS--CEE--ETTEEEEEECC
T ss_pred ----------CccceEEEEECCHHHHHHHHHc--CCe--eCCeEEEEEec
Confidence 0124899999999999999885 432 33445555543
No 133
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=90.09 E-value=0.86 Score=41.99 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=57.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...+|..+|+.| |.|.+|.|..... .|.
T Consensus 26 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~----G~i~~v~i~~~~~----------~g~---------------------- 68 (216)
T 2qfj_A 26 AIMSRVYVGSIYYE-LGEDTIRQAFAPF----GPIKSIDMSWDSV----------TMK---------------------- 68 (216)
T ss_dssp HHHTEEEEECCCTT-CCHHHHHHHHGGG----SCEEEEEECCC-C----------C-C----------------------
T ss_pred CcCCEEEEECCCCC-CCHHHHHHHHHhC----CCEEEEEEeecCC----------CCc----------------------
Confidence 36789999999997 8999999999988 7899998854210 011
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
.-=||.|+|.+.+.|......++|+.+.-
T Consensus 69 ----------~~g~afV~f~~~~~A~~A~~~l~~~~~~g 97 (216)
T 2qfj_A 69 ----------HKGFAFVEYEVPEAAQLALEQMNSVMLGG 97 (216)
T ss_dssp ----------CCSEEEEEESSHHHHHHHHHHHSSCCCC-
T ss_pred ----------cCceEEEEeCCHHHHHHHHHHccCCeeCC
Confidence 13489999999999999999999988754
No 134
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=89.96 E-value=0.61 Score=41.29 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=57.1
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+++|=|-||.|+ +.-.+|..+|+.| |.|.+|.|.....|. ++
T Consensus 2 ~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~~~~----------~~---------------------- 44 (175)
T 3nmr_A 2 DAIKMFVGQVPRT-WSEKDLRELFEQY----GAVYEINVLRDRSQN----------PP---------------------- 44 (175)
T ss_dssp CCEEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEEEEEECSSS----------SC----------------------
T ss_pred CceEEEEeCCCCC-CCHHHHHHHHHhC----CCEEEEEEEecCCCC----------CC----------------------
Confidence 4679999999997 8999999999987 789999987543221 00
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEF 289 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~ 289 (610)
..-=||.|+|.+.+.|......++|+.+
T Consensus 45 --------~~~g~afV~f~~~~~A~~A~~~l~~~~~ 72 (175)
T 3nmr_A 45 --------QSKGCCFVTFYTRKAALEAQNALHNMKV 72 (175)
T ss_dssp --------EEEEEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred --------CcceEEEEEECCHHHHHHHHHHhcCcEE
Confidence 1135899999999999999999999876
No 135
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=89.96 E-value=0.62 Score=43.93 Aligned_cols=69 Identities=23% Similarity=0.298 Sum_probs=57.0
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+++|-|.||.| .+.-.||..+|+.| |.|.+|.|.... |
T Consensus 102 ~~~~l~v~nl~~-~~t~~~l~~~F~~~----G~i~~~~i~~d~------------~------------------------ 140 (213)
T 4f02_A 102 GVGNIFIKNLDK-SIDNKALYDTFSAF----GNILSCKVVCDE------------N------------------------ 140 (213)
T ss_dssp CTTEEEEESCCT-TCCHHHHHHHHGGG----SCEEEEEEEEET------------T------------------------
T ss_pred ccccceECCccc-ccHHHHHHHHHhhc----CCeEEEEeeccC------------C------------------------
Confidence 567999999999 48899999999988 789999985421 0
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
+- --||.|+|.+.+.|......++|+.+.-
T Consensus 141 -------~~-~g~~fV~f~~~~~a~~Ai~~lng~~~~g 170 (213)
T 4f02_A 141 -------GS-KGYGFVHFETQEAAERAIEKMNGMLLND 170 (213)
T ss_dssp -------EE-EEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred -------CC-ceEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 01 2589999999999999999999998753
No 136
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=89.95 E-value=0.72 Score=40.47 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=55.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.| | ++...||..+|+.| |.|.+|.|- ..
T Consensus 37 ~~~~~lfVgn--l-~~te~~L~~~F~~~----G~I~~v~i~----------------~~--------------------- 72 (121)
T 2bz2_A 37 RKGNTLYVYG--E-DMTPTLLRGAFSPF----GNIIDLSMD----------------PP--------------------- 72 (121)
T ss_dssp CCCCEEEEEC--S-SCCHHHHHHHHSTT----CCCSCEEEE----------------TT---------------------
T ss_pred CCCCEEEEcC--C-CCCHHHHHHHHHcc----CCEEEEEEe----------------CC---------------------
Confidence 4678999999 4 48999999999877 678888872 00
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
-=||.|+|.+.+.|......++|..+. +..|-+.|
T Consensus 73 -----------kg~aFV~f~~~~~A~~Ai~~lng~~~~--g~~l~V~~ 107 (121)
T 2bz2_A 73 -----------RNCAFVTYEKMESADQAVAELNGTQVE--SVQLKVNI 107 (121)
T ss_dssp -----------TTEEEEECSSHHHHHHHHHHHTTCBCS--SCBCEEEE
T ss_pred -----------CCEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEE
Confidence 028999999999999999999999874 45554444
No 137
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=89.91 E-value=1.3 Score=38.80 Aligned_cols=79 Identities=13% Similarity=0.263 Sum_probs=61.1
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
++++|=|.||.|+ +...+|..+|+.| |.|.+|.|.+..- .|.
T Consensus 1 s~~~l~v~nlp~~-~~~~~l~~~f~~~----G~i~~v~~~~~~~----------~~~----------------------- 42 (167)
T 1fxl_A 1 SKTNLIVNYLPQN-MTQEEFRSLFGSI----GEIESCKLVRDKI----------TGQ----------------------- 42 (167)
T ss_dssp CCSEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEEEEECTT----------TCC-----------------------
T ss_pred CcceEEEcCCCCC-CCHHHHHHHHHhc----CCeEEEEEEeCCC----------CCc-----------------------
Confidence 3678999999996 8999999999987 6899999875321 111
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
--=||.|+|.+.+.|......++|+.+.. ..|-+.+.
T Consensus 43 ---------~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 79 (167)
T 1fxl_A 43 ---------SLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYA 79 (167)
T ss_dssp ---------EEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEC
T ss_pred ---------ceeEEEEEECCHHHHHHHHHHcCCCccCC--ceEEEEec
Confidence 12489999999999999999999988853 44545444
No 138
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=89.91 E-value=1.2 Score=38.34 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=59.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
+.|..|=|-||+|. +.-.+|.-||.-| |.|.+|.|++| .|
T Consensus 5 ~~~~wL~VgNL~~~-~te~~L~~lF~q~----G~V~~~~l~~~------------kG----------------------- 44 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQ-IDGPTLRTLCMQH----GPLVSFHPYLN------------QG----------------------- 44 (89)
T ss_dssp CCCCEEEEECCCTT-CCCHHHHHHHHHH----SCEEEEEEETT------------TT-----------------------
T ss_pred CccceEEEeCCCcc-CCHHHHHHHHHhh----CCEEEEEEcCC------------Cc-----------------------
Confidence 57889999999997 8889999999876 78999999872 23
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSN 294 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San 294 (610)
||.||+.+.+.|...-..++|+.+.-...
T Consensus 45 -------------faFVey~~~~eA~~Ai~~Ln~~~l~gr~I 73 (89)
T 2wbr_A 45 -------------IALCKYTTREEANKAQMALNNCVLANTTI 73 (89)
T ss_dssp -------------EEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred -------------EEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 99999999999999999999988776443
No 139
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=89.86 E-value=0.96 Score=41.06 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=62.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.| .+...||..+|+.| |.|.+|.|.+..- .|
T Consensus 112 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~----G~v~~~~~~~~~~----------~~----------------------- 153 (198)
T 2yh0_A 112 DSAHKLFIGGLPN-YLNDDQVKELLTSF----GPLKAFNLVKDSA----------TG----------------------- 153 (198)
T ss_dssp CCCCEEEEECCCT-TCCHHHHHHHHHTB----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHc----CCccEEEEeecCC----------CC-----------------------
Confidence 4789999999999 78999999999987 7899998865310 01
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
..--||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 154 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 190 (198)
T 2yh0_A 154 ---------LSKGYAFCEYVDINVTDQAIAGLNGMQLG--DKKLLVQR 190 (198)
T ss_dssp ---------SEEEEEEEEESSSSHHHHHHHHHTTCEET--TEECEEEE
T ss_pred ---------CcceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEE
Confidence 01358999999999999999999999885 44454444
No 140
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=89.86 E-value=0.54 Score=44.85 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=60.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCce--EEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhh
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQI--LSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEID 250 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i--~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d 250 (610)
.+++.|-|-||.|+ +.-.||-.+|+.| |.| .+|.|++.. | |+
T Consensus 121 ~p~~~l~v~NLp~~-~t~~~L~~~F~~~----G~v~~~~v~~~~~~-~----------~~-------------------- 164 (205)
T 3tyt_A 121 HPSNVLHFFNAPLE-VTEENFFEICDEL----GVKRPTSVKVFSGK-S----------ER-------------------- 164 (205)
T ss_dssp CCCSEEEEEEECTT-CCHHHHHHHHHHH----TCCCCSEEEECSCC-S----------SS--------------------
T ss_pred CCcceEEEeCCCCC-CCHHHHHHHHHhc----CCcceEEEEEEcCC-C----------CC--------------------
Confidence 46788999999995 8899999999987 556 899998753 1 11
Q ss_pred HHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccc
Q 007265 251 EEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSN 294 (610)
Q Consensus 251 ~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San 294 (610)
-=||.|+|.+.+.|...-..|+|.++..+.+
T Consensus 165 -------------~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~ 195 (205)
T 3tyt_A 165 -------------SSSGLLEWDSKSDALETLGFLNHYQMKNPNG 195 (205)
T ss_dssp -------------SEEEEEECSSHHHHHHHHHHHTTCEECCSSS
T ss_pred -------------ceEEEEEeCCHHHHHHHHHHhCCCCccCCCC
Confidence 1389999999999999999999999987654
No 141
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.85 E-value=0.58 Score=39.92 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=58.9
Q ss_pred CCceeEEeccCCCccchhhHH---HHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhh
Q 007265 174 ETHRLAIVNMDWRHVKAVDLL---VILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEID 250 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~---vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d 250 (610)
..++|=|.||.| ++...||. .+|+.| |.|.+|.|-+..- .|
T Consensus 14 ~~~~l~V~nLp~-~~~~~~l~~~~~~F~~~----G~i~~v~i~~~~~----------~~--------------------- 57 (111)
T 2cpi_A 14 QKNLVFVVGLSQ-RLADPEVLKRPEYFGKF----GKIHKVVINNSTS----------YA--------------------- 57 (111)
T ss_dssp CSSCEEEEEECT-TTCCHHHHHSTTTTTTT----SCEEEEEEECCSS----------CC---------------------
T ss_pred CCCEEEEECCCC-CCCHHHHHHHHHHhhcc----CCEEEEEEecCCC----------cC---------------------
Confidence 578999999999 57888998 666655 7899999854210 00
Q ss_pred HHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 251 EEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 251 ~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
..+.---||.|+|.+.+.|......++|..+. +..|-+.|
T Consensus 58 --------~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~--gr~l~V~~ 97 (111)
T 2cpi_A 58 --------GSQGPSASAYVTYIRSEDALRAIQCVNNVVVD--GRTLKASL 97 (111)
T ss_dssp --------SSSCCCEEEEEEESSHHHHHHHHHHHTTEEET--TEEEEEES
T ss_pred --------ccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC--CEEEEEEe
Confidence 00111369999999999999999999999875 34444443
No 142
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=89.83 E-value=0.47 Score=46.38 Aligned_cols=80 Identities=11% Similarity=0.127 Sum_probs=62.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.|+.+...+|..+|+.| |.|.+|.|.+..-+ .|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~---------tg~---------------------- 252 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGF----GSIEKINIPAGQKE---------HSF---------------------- 252 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGG----SCEEEEECCSCCC------------C----------------------
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhcc----CCeeEEEEEecCCc---------CCC----------------------
Confidence 4678999999999989999999999987 78999988653210 011
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
.--||.|+|.+.+.|.... .++|..+. +..|-+.|
T Consensus 253 ----------~~g~afV~F~~~~~A~~A~-~l~g~~~~--g~~i~V~~ 287 (292)
T 2ghp_A 253 ----------NNCCAFMVFENKDSAERAL-QMNRSLLG--NREISVSL 287 (292)
T ss_dssp ----------CCEEEEEEESSHHHHHHHG-GGTTEEET--TEEEEEEE
T ss_pred ----------CceEEEEEeCCHHHHHHHH-HhcCCEEC--CcEEEEEE
Confidence 1258999999999999999 99999875 34444443
No 143
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=89.60 E-value=0.76 Score=36.68 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=52.6
Q ss_pred CceeEEeccCCCcc-----chhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhh
Q 007265 175 THRLAIVNMDWRHV-----KAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEI 249 (610)
Q Consensus 175 T~RlAvvN~DWD~i-----~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~ 249 (610)
+++|=|-||.|+-- .-.+|..+|+.| |.|.+|.|-+ .- |.+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~i~~v~i~~-~~-----------g~~------------------ 46 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYPE-ED-----------GKT------------------ 46 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT----CCEEEEECCC-BT-----------TBC------------------
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc----CCeEEEEecC-CC-----------CcE------------------
Confidence 36889999998432 458899999876 7899987641 11 111
Q ss_pred hHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 250 DEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 250 d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
-=||.|+|.+.+.|......++|..+.-
T Consensus 47 --------------~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 47 --------------KGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp --------------CCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred --------------eEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 1389999999999999999999998753
No 144
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=89.49 E-value=0.32 Score=40.48 Aligned_cols=63 Identities=10% Similarity=0.196 Sum_probs=50.8
Q ss_pred CCCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 172 DNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 172 ~~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
...+++|=|.||.| ++...+|..+|+.| |.|.+|.|....- |-
T Consensus 6 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~----G~i~~v~i~~~~~-----------g~--------------------- 48 (102)
T 2xs2_A 6 KIMPNTVFVGGIDV-RMDETEIRSFFARY----GSVKEVKIITDRT-----------GV--------------------- 48 (102)
T ss_dssp EEEEEEEEEECCCT-TCCHHHHHHHHGGG----SCEEEEEEEECTT-----------SC---------------------
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhC----CCeEEEEEEECCC-----------CC---------------------
Confidence 35678999999998 58999999999988 7899999865321 10
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHH
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYR 282 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ 282 (610)
---||.|+|.+.+.|.....
T Consensus 49 -----------~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 49 -----------SKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp -----------EEEEEEEEESSCCCHHHHTT
T ss_pred -----------ccceEEEEECCHHHHHHHHh
Confidence 02489999999999999998
No 145
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=89.43 E-value=1.1 Score=43.51 Aligned_cols=77 Identities=25% Similarity=0.356 Sum_probs=57.6
Q ss_pred CCCceeEEeccCCCccchhh----HHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchh
Q 007265 173 NETHRLAIVNMDWRHVKAVD----LLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDE 248 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~D----L~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~ 248 (610)
.++++|=|-||.|+ +.-.| |+.+|+.| |.|.+|.|.. .|..
T Consensus 7 ~~~~~l~V~nlp~~-~~~~~l~~~L~~~F~~~----G~i~~v~~~~-------------~~~~----------------- 51 (282)
T 3pgw_A 7 RPNHTIYINNLNEK-IKKDELKKSLYAIFSQF----GQILDILVSR-------------SLKM----------------- 51 (282)
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHHHhcc----CCeEEEEEcC-------------CCCc-----------------
Confidence 57999999999985 77788 45566554 7999998753 1211
Q ss_pred hhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 249 IDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 249 ~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
--||.|+|.+.+.|......++|+.+.- ..|-+.|.
T Consensus 52 ---------------~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a 87 (282)
T 3pgw_A 52 ---------------RGQAFVIFKEVSSATNALRSMQGFPFYD--KPMRIQYA 87 (282)
T ss_pred ---------------ceEEEEEECCHHHHHHHHHHhcCCeeCC--cEEEEEEe
Confidence 1389999999999999999999987754 44444443
No 146
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=88.72 E-value=0.82 Score=44.55 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=59.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|-||.|+ +.-.||..+|+.| |.|.+|.|-.+
T Consensus 20 ~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~------------------------------------- 57 (261)
T 3sde_A 20 TQRCRLFVGNLPTD-ITEEDFKRLFERY----GEPSEVFINRD------------------------------------- 57 (261)
T ss_dssp CGGGEEEEESCCTT-CCHHHHHHHTGGG----CCCSEEEEETT-------------------------------------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhc----CCEEEEEEeCC-------------------------------------
Confidence 36789999999987 7899999999987 67889988321
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
-=||.|+|.+.+.|......++|+.+. +..|-+++.
T Consensus 58 -----------kg~afV~f~~~~~A~~A~~~l~g~~i~--g~~l~v~~a 93 (261)
T 3sde_A 58 -----------RGFGFIRLESRTLAEIAKAELDGTILK--SRPLRIRFA 93 (261)
T ss_dssp -----------TTEEEEECSSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred -----------CcEEEEEECCHHHHHHHHHHcCCcEEC--CceeEeeec
Confidence 028999999999999999999999875 345555544
No 147
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.54 E-value=1.1 Score=37.06 Aligned_cols=67 Identities=13% Similarity=0.061 Sum_probs=51.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|+ +...||..+|+.|- .|. |.|.. | ..
T Consensus 17 ~~~~~l~V~nL~~~-~t~~~l~~~F~~~G----~v~-~~~~~---~-----------~~--------------------- 55 (97)
T 2e5j_A 17 PLAADVYVGNLPRD-ARVSDLKRALRELG----SVP-LRLTW---Q-----------GP--------------------- 55 (97)
T ss_dssp CCCCEEEEECCCTT-CCHHHHHHHHHHTT----CCC-SEEEE---E-----------TT---------------------
T ss_pred CCCCEEEEeCCCCc-CcHHHHHHHHHhcC----CEE-EEEEc---C-----------CC---------------------
Confidence 46889999999985 78899999999884 343 33321 1 00
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
-=||.|+|.+.+.|......++|..+.-
T Consensus 56 -----------~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (97)
T 2e5j_A 56 -----------RRRAFLHYPDSAAAQQAVSCLQGLRLGT 83 (97)
T ss_dssp -----------TTEEEEECSSHHHHHHHHHHHTTCCSSS
T ss_pred -----------CcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 1279999999999999999999998753
No 148
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=88.53 E-value=0.6 Score=37.77 Aligned_cols=75 Identities=12% Similarity=0.206 Sum_probs=56.1
Q ss_pred ceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHHHH
Q 007265 176 HRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKLR 255 (610)
Q Consensus 176 ~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~LR 255 (610)
++|=|.||.| ++...||..+|+.| |.|.+|.|-.... .|-
T Consensus 2 ~~l~V~nLp~-~~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~~------------------------- 41 (90)
T 2ki2_A 2 RNIYVGNLVY-SATSEQVKELFSQF----GKVFNVKLIYDRE----------TKK------------------------- 41 (90)
T ss_dssp EEEEEEEECT-TSSHHHHTTTHHHH----TCCSEEEECCCSS----------SCC-------------------------
T ss_pred cEEEECCCCC-CCCHHHHHHHHHhc----CCEEEEEEEEcCC----------CCC-------------------------
Confidence 5788999999 58899999999987 6788888743210 010
Q ss_pred HHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 256 AYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 256 ~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
.-=||.|+|.+.+ |......++|..+. +..|-+++
T Consensus 42 -------~~g~afV~f~~~~-a~~a~~~l~g~~~~--g~~l~V~~ 76 (90)
T 2ki2_A 42 -------PKGFGFVEMQEES-VSEAIAKLDNTDFM--GRTIRVTE 76 (90)
T ss_dssp -------CCEEEEEEECTTH-HHHHHHTSCSSCCS--SSSCSEEE
T ss_pred -------cceEEEEEECCHH-HHHHHHHhCCCEEC--CeEEEEEE
Confidence 0238999999999 99999999999876 44444443
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=88.47 E-value=1.5 Score=38.28 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=59.4
Q ss_pred ceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHHHH
Q 007265 176 HRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKLR 255 (610)
Q Consensus 176 ~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~LR 255 (610)
++|-|-||.|+ +...||..+|+.| |.|.+|.|.+..-| ..
T Consensus 1 R~l~V~nlp~~-~t~~~l~~~f~~~----G~i~~v~i~~~~~~-----------~~------------------------ 40 (166)
T 3md3_A 1 RVLYVGNLDKA-ITEDILKQYFQVG----GPIANIKIMIDKNN-----------KN------------------------ 40 (166)
T ss_dssp CEEEEEEEETT-CCHHHHHHHHGGG----SCEEEEEEECCCC------------CC------------------------
T ss_pred CEEEECCCCCc-CCHHHHHHHHHhc----CCeEEEEEEECCCC-----------CC------------------------
Confidence 57889999976 7889999999987 68999999743211 11
Q ss_pred HHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 256 AYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 256 ~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
.=||.|+|.+.+.|......++|..+. +..|-+++.
T Consensus 41 --------~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~i~v~~~ 76 (166)
T 3md3_A 41 --------VNYAFVEYHQSHDANIALQTLNGKQIE--NNIVKINWA 76 (166)
T ss_dssp --------EEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred --------CCEEEEEeCCHHHHHHHHHHcCCCccC--CCeeEEEEc
Confidence 238999999999999999999999885 455555554
No 150
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=88.36 E-value=1.2 Score=44.58 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=56.8
Q ss_pred CCCceeEEeccCCCc--------cchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCC
Q 007265 173 NETHRLAIVNMDWRH--------VKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDE 244 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~--------i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~ 244 (610)
..++.|-|-||.|+- +.-.+|..+|+.| |.|.+|.|-++ .
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f----G~I~~v~v~~~------------k---------------- 179 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL----GDIDRIRYVES------------K---------------- 179 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT----SCEEEEEEEGG------------G----------------
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc----CCEEEEEEECC------------C----------------
Confidence 467899999999983 4789999999988 89999999742 1
Q ss_pred CchhhhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccc
Q 007265 245 DNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEF 289 (610)
Q Consensus 245 ~~e~~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~ 289 (610)
=||.|+|.+.+.|....++++|..+
T Consensus 180 --------------------G~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 180 --------------------NCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp --------------------TEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred --------------------CEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 1899999999999999999999999
No 151
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.22 E-value=0.5 Score=40.54 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=53.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCce-EEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQI-LSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i-~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
...++|=|-||.|+ +...||..+|+.| |.| .+|.|....-|
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----g~v~~~v~i~~d~~g--------------------------------- 54 (114)
T 2cpy_A 13 SAKVCAHITNIPFS-ITKMDVLQFLEGI----PVDENAVHVLVDNNG--------------------------------- 54 (114)
T ss_dssp SCCCEEEEESCCTT-SCHHHHHHHTTTS----CCCSTTEEECCCTTS---------------------------------
T ss_pred CCccEEEEeCcCCc-CCHHHHHHHHHhC----CCcCCeEEEEECCCC---------------------------------
Confidence 36788999999997 8999999999988 677 67776321111
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
+. -=||.|+|.+.+.|...... +|..+.-
T Consensus 55 ---------~~-~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 55 ---------QG-LGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp ---------SC-SSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred ---------Cc-ceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 00 13799999999999999887 9977653
No 152
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.93 E-value=3.4 Score=33.65 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=60.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEE-EecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVA-VYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~-IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
..+++|=|-||.|+ +...||..+|+.| |.|.+|. |.. + |. .
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~v~~~~~i~~-~-------------~~-------------~------ 54 (96)
T 2e44_A 13 QRIRKLQIRNIPPH-LQWEVLDSLLVQY----GVVESCEQVNT-D-------------SE-------------T------ 54 (96)
T ss_dssp CSCCCEEEEEECSS-SCHHHHHHHHHHH----SCEEEEEEECC-S-------------SS-------------S------
T ss_pred CCCCEEEEEcCCCC-CCHHHHHHHHHhc----CCeEEEEEeec-C-------------CC-------------C------
Confidence 36789999999995 8899999999988 7888884 532 0 00 0
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccccCC
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPD 303 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFVPD 303 (610)
.+ |.|+|.+.+.|......++|..+. +..|-+.|..+
T Consensus 55 -----------~~--afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~V~~a~~ 91 (96)
T 2e44_A 55 -----------AV--VNVTYSSKDQARQALDKLNGFQLE--NFTLKVAYIPD 91 (96)
T ss_dssp -----------EE--EEEEESSHHHHHHHHHHHTTCBCS--SCBCEEEECCC
T ss_pred -----------CE--EEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEEcCc
Confidence 01 999999999999999999999886 56666666543
No 153
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=87.75 E-value=2.6 Score=33.66 Aligned_cols=69 Identities=10% Similarity=0.280 Sum_probs=53.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|+ +...||..+|+.| |.|.+|.|....- .|-
T Consensus 9 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g~---------------------- 51 (87)
T 3s7r_A 9 EDAGKMFVGGLSWD-TSKKDLKDYFTKF----GEVVDCTIKMDPN----------TGR---------------------- 51 (87)
T ss_dssp SCTTEEEEECCCTT-CCHHHHHHHHTTT----SCEEEEEEEECTT----------TCC----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhC----CCEEEEEEeecCC----------CCc----------------------
Confidence 57899999999986 6999999999877 7899999864310 010
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEF 289 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~ 289 (610)
.-=||.|+|.+.+.|...... +|..+
T Consensus 52 ----------~~g~afV~f~~~~~a~~A~~~-~~~~~ 77 (87)
T 3s7r_A 52 ----------SRGFGFILFKDAASVEKVLDQ-KEHRL 77 (87)
T ss_dssp ----------EEEEEEEEESSTHHHHHHHHS-SCEEE
T ss_pred ----------cccEEEEEECCHHHHHHHHHh-CCCEE
Confidence 123899999999999999855 66543
No 154
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=87.48 E-value=0.81 Score=38.75 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=53.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
....+|=|.||.|+ ++..||..+|+.|=+.| .|.+|.|....-|+
T Consensus 9 ~~~~~l~V~nLp~~-~te~~l~~~F~~~g~~~-~v~~v~i~~~~~g~--------------------------------- 53 (107)
T 2lmi_A 9 DDVFLIRAQGLPWS-CTMEDVLNFFSDCRIRN-GENGIHFLLNRDGK--------------------------------- 53 (107)
T ss_dssp SSCCEEEEECCCSS-CCSHHHHHHTTTSCBTT-TTTTEECCCCTTST---------------------------------
T ss_pred CCccEEEEeCCCCC-CCHHHHHHHHHhcCCcC-CcceEEEEECCCCC---------------------------------
Confidence 46789999999998 78999999999885543 26666653221121
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
.| =||.|+|.+.+.|..... ++|..+.
T Consensus 54 ---------~~-G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 54 ---------RR-GDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp ---------TC-SEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred ---------Ee-eEEEEEECCHHHHHHHHH-hCcceeC
Confidence 11 279999999999999988 8987764
No 155
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=87.25 E-value=2.2 Score=39.18 Aligned_cols=77 Identities=18% Similarity=0.321 Sum_probs=58.2
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCC--ceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG--QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG--~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
..++|=|-||.|+ +...||..+|+.| | .|.+|.|..-.. .|
T Consensus 54 ~~~~lfVgnLp~~-~te~~L~~~F~~~----G~i~v~~v~i~~d~~----------tg---------------------- 96 (156)
T 3n9u_C 54 RRAAVYVGSFSWW-TTDQQLIQVIRSI----GVYDVVELKFAENRA----------NG---------------------- 96 (156)
T ss_dssp --CEEEEECCCTT-CCHHHHHHHHHHT----TCCCEEEEEEEECTT----------TC----------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHH----CCccEEEEEEEecCC----------CC----------------------
Confidence 5689999999996 7899999999987 5 799998863210 01
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLR 299 (610)
+. -=||.|+|.+.+.|......++|.++. +..|-++
T Consensus 97 ---------~s-kGfaFV~f~~~~~A~~Ai~~lng~~~~--Gr~l~V~ 132 (156)
T 3n9u_C 97 ---------QS-KGYAEVVVASENSVHKLLELLPGKVLN--GEKVDVR 132 (156)
T ss_dssp ---------CE-EEEEEEEESCHHHHHHHHHHSTTCEET--TEECEEE
T ss_pred ---------cc-ceEEEEEECCHHHHHHHHHHcCCCEEC--CeEeEEE
Confidence 11 238999999999999999999999875 3444443
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=87.24 E-value=2.5 Score=38.20 Aligned_cols=70 Identities=11% Similarity=0.145 Sum_probs=55.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|-||.| ++...||..+|+.| |.|.+|.|..... .|.
T Consensus 11 ~~~~~l~V~nLp~-~~te~~l~~~F~~~----G~i~~v~i~~~~~----------~g~---------------------- 53 (196)
T 1l3k_A 11 EQLRKLFIGGLSF-ETTDESLRSHFEQW----GTLTDCVVMRDPN----------TKR---------------------- 53 (196)
T ss_dssp GGGGEEEEESCCT-TCCHHHHHHHHGGG----SCEEEEEEEECTT----------TCC----------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhC----CCEEEEEEEEcCC----------CCC----------------------
Confidence 5789999999999 58999999999988 7899998875321 011
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
-.=||.|+|.+.+.|...... +|..+.
T Consensus 54 ----------~~g~afV~f~~~~~A~~A~~~-~~~~~~ 80 (196)
T 1l3k_A 54 ----------SRGFGFVTYATVEEVDAAMNA-RPHKVD 80 (196)
T ss_dssp ----------EEEEEEEEESSHHHHHHHHHT-CSCEET
T ss_pred ----------ccceEEEEeCCHHHHHHHHhc-CCCEEC
Confidence 124899999999999999876 776653
No 157
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=87.14 E-value=1.5 Score=42.90 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=55.2
Q ss_pred CCCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 172 DNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 172 ~~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
...+++|-|-||.| ++...+|..+|+.| |.|.+|.|.+..= |.
T Consensus 38 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~----G~i~~v~i~~~~~-----------~~--------------------- 80 (292)
T 2ghp_A 38 NRELTTVLVKNLPK-SYNQNKVYKYFKHC----GPIIHVDVADSLK-----------KN--------------------- 80 (292)
T ss_dssp ----CEEEEEEECT-TCCHHHHHHHHGGG----SCEEEEEEEECTT-----------SS---------------------
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhc----CCeEEEEEEECCC-----------CC---------------------
Confidence 35789999999999 58999999999987 7899999987431 10
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
-=||.|+|.+.+.|.... +++|..+.-
T Consensus 81 ------------~g~afV~f~~~~~A~~A~-~~~~~~~~g 107 (292)
T 2ghp_A 81 ------------FRFARIEFARYDGALAAI-TKTHKVVGQ 107 (292)
T ss_dssp ------------SEEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred ------------cEEEEEEECCHHHHHHHH-HhCCcEeCC
Confidence 138999999999999998 589988754
No 158
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.87 E-value=0.73 Score=37.86 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=55.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|..|.|-... ..|
T Consensus 13 ~~~~~l~v~nLp~~-~t~~~l~~~F~~~----G~v~~~~~~~~~----------~~g----------------------- 54 (98)
T 2cqp_A 13 PGPTIIKVQNMPFT-VSIDEILDFFYGY----QVIPGSVCLKYN----------EKG----------------------- 54 (98)
T ss_dssp CSSEEEEEESCCTT-CCHHHHHHHTTTS----CCCTTTCEEEEC----------SSS-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHc----CCccceEEEEEC----------CCC-----------------------
Confidence 46789999999996 7889999999877 334322221100 000
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
+ .-=||.|+|.+.+.|......++|..+.- ..|-+++
T Consensus 55 --------~-~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~~ 91 (98)
T 2cqp_A 55 --------M-PTGEAMVAFESRDEATAAVIDLNDRPIGS--RKVKLVL 91 (98)
T ss_dssp --------C-EEEEEEEEESCHHHHHHHHHHTTTCEETT--EECEEEE
T ss_pred --------C-eeeEEEEEECCHHHHHHHHHHhCCCeeCC--eEEEEEE
Confidence 1 12589999999999999999999998764 4444444
No 159
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=86.70 E-value=1.2 Score=34.79 Aligned_cols=66 Identities=9% Similarity=0.127 Sum_probs=50.1
Q ss_pred eeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHHHHH
Q 007265 177 RLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKLRA 256 (610)
Q Consensus 177 RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~LR~ 256 (610)
||=|.||.|+ +...||..+|+.| |.|.+|.|....- .|.
T Consensus 1 ~l~v~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~~-------------------------- 39 (75)
T 2mss_A 1 KIFVGGLSVN-TTVEDVKHYFEQF----GKVDDAMLMFDKT----------TNR-------------------------- 39 (75)
T ss_dssp CEEEECCCSS-CCHHHHHHHHHTT----SCCSEECCCBCSS----------STT--------------------------
T ss_pred CEEEecCCCC-CCHHHHHHHHHhc----CCEEEEEEEecCC----------CCC--------------------------
Confidence 5779999995 8999999999987 6788877643210 010
Q ss_pred HHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 257 YEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 257 YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
.-=||.|+|.+.+.|.++.. ++|..+.
T Consensus 40 ------~~g~afV~f~~~~~a~~a~~-~~~~~~~ 66 (75)
T 2mss_A 40 ------HRGFGFVTFESEDIVEKVCE-IHFHEIN 66 (75)
T ss_dssp ------SCBEEEEECSCHHHHHHHHS-SSCCCSS
T ss_pred ------cCcEEEEEECCHHHHHHHHH-CCCCEEC
Confidence 02389999999999999986 8988875
No 160
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=86.66 E-value=1.9 Score=38.05 Aligned_cols=79 Identities=13% Similarity=0.206 Sum_probs=56.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCC----ceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchh
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG----QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDE 248 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG----~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~ 248 (610)
.++++|-|-||.|+ +.-.||..+|+.|-+... .|..|.+.. .|..
T Consensus 43 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-------------~g~~----------------- 91 (143)
T 3egn_A 43 EPNCRIYVKNLAKH-VQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-------------EGRM----------------- 91 (143)
T ss_dssp SCCSEEEEEEECTT-CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-------------ETTT-----------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCCcccccccceeeEEecc-------------CCCc-----------------
Confidence 58899999999995 899999999998843221 112233221 1211
Q ss_pred hhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 007265 249 IDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (610)
Q Consensus 249 ~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLR 299 (610)
.=||.|+|.+.+.|......++|..+. +..|-+.
T Consensus 92 ---------------~g~afV~f~~~~~A~~Ai~~lng~~~~--g~~l~V~ 125 (143)
T 3egn_A 92 ---------------KGQAFIGLPNEKAAAKALKEANGYVLF--GKPMVVQ 125 (143)
T ss_dssp ---------------EEEEEEECSSHHHHHHHHHHHTTBEET--TEECEEE
T ss_pred ---------------ccEEEEEeCCHHHHHHHHHHhCCCEeC--CcEEEEE
Confidence 249999999999999999999999885 3444443
No 161
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=86.29 E-value=0.14 Score=43.87 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=56.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEE--------EEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCC
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILS--------VAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDE 244 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~--------V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~ 244 (610)
..+++|=|-||.|+ +...||..+|+.| |.|.+ |.|.....
T Consensus 5 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~--------------------------- 52 (116)
T 2lcw_A 5 SDNNTIFVQGLGEN-VTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRE--------------------------- 52 (116)
Confidence 46789999999987 7888999999877 45655 33321100
Q ss_pred CchhhhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 245 DNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 245 ~~e~~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
-.+ .--||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 53 --------------~g~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~ 91 (116)
T 2lcw_A 53 --------------TGK-LKGEATVSFDDPPSAKAAIDWFDGKEFS--GNPIKVSF 91 (116)
Confidence 001 1238999999999999999999998876 44444443
No 162
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=86.17 E-value=1.9 Score=42.01 Aligned_cols=71 Identities=24% Similarity=0.332 Sum_probs=55.7
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCC--ceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG--QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG--~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
.+.+|-|-||.|+ ++-.||..+|+.| | .|.+|.|..--. .|
T Consensus 67 ~~~~lfVgnL~~~-~te~~L~~~F~~~----G~~~v~~v~i~~d~~----------tg---------------------- 109 (229)
T 3q2s_C 67 KRIALYIGNLTWW-TTDEDLTEAVHSL----GVNDILEIKFFENRA----------NG---------------------- 109 (229)
T ss_dssp --CEEEEESCCTT-CCHHHHHHHHHTT----TCCCEEEEEEEECTT----------TC----------------------
T ss_pred CccEEEEeCCCCC-CCHHHHHHHHHHH----CCcceEEEEEEecCC----------CC----------------------
Confidence 5778999999996 7889999999987 5 899998863210 01
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
+. -=||.|+|.+.+.|......++|.+|.-
T Consensus 110 ---------~s-kGfaFV~f~~~~~a~~Ai~~lng~~~~G 139 (229)
T 3q2s_C 110 ---------QS-KGFALVGVGSEASSKKLMDLLPKRELHG 139 (229)
T ss_dssp ---------CE-EEEEEEEESCTTHHHHHHTTSTTSCBTT
T ss_pred ---------cc-ceEEEEEECCHHHHHHHHHHcCCCeECC
Confidence 11 2489999999999999999999998864
No 163
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=86.11 E-value=0.91 Score=38.03 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=55.8
Q ss_pred CCceeEEeccCC-----CccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchh
Q 007265 174 ETHRLAIVNMDW-----RHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDE 248 (610)
Q Consensus 174 ~T~RlAvvN~DW-----D~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~ 248 (610)
.++.|=|-||.| -++.-.+|..+|+.| |.|.+|.|-.... .|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~----G~i~~v~i~~d~~----------tg------------------- 51 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA----GKVVNMEFPIDEA----------TG------------------- 51 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT----SCEEEEECCEETT----------TT-------------------
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc----CCEeEEEEEEcCC----------CC-------------------
Confidence 567899999998 267778899999877 7899998753221 01
Q ss_pred hhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 249 IDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 249 ~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
+. -=||.|+|.+.+.|......++|..+.-
T Consensus 52 ------------~~-kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 52 ------------KT-KGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp ------------EE-CSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ------------cc-ceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 01 1389999999999999999999998864
No 164
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=86.00 E-value=0.86 Score=39.50 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=55.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
...++|=|-||.|+ ++..||..+|+.|=+.+ .|.+|.|....-|+
T Consensus 15 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~~~-~v~~v~i~~~~~g~--------------------------------- 59 (118)
T 2db1_A 15 GEGYVVKLRGLPWS-CSIEDVQNFLSDCTIHD-GVAGVHFIYTREGR--------------------------------- 59 (118)
T ss_dssp CCCCEEEEESCCTT-CCHHHHHHHTTTSCBTT-GGGGEEEEECSSSC---------------------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHcCCcc-CceeEEEEECCCCC---------------------------------
Confidence 46788999999998 78899999999875543 26666664321121
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
. -=||.|+|.+.+.|.+... ++|..+.-
T Consensus 60 ---------~-~G~afV~F~~~~~a~~Al~-~~g~~~~g 87 (118)
T 2db1_A 60 ---------Q-SGEAFVELESEDDVKLALK-KDRESMGH 87 (118)
T ss_dssp ---------E-EEEEEEEBSSHHHHHHHGG-GTTEEETT
T ss_pred ---------C-CeEEEEEECCHHHHHHHHh-cCCCeECC
Confidence 1 1389999999999999999 99988754
No 165
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=85.91 E-value=2.4 Score=37.77 Aligned_cols=79 Identities=16% Similarity=0.287 Sum_probs=60.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +.-.||..+|+.| |.|.+|.|..... .|-
T Consensus 68 ~~~~~l~v~nl~~~-~~~~~l~~~F~~~----G~v~~~~i~~~~~----------~g~---------------------- 110 (158)
T 2kn4_A 68 EGMTSLKVDNLTYR-TSPDTLRRVFEKY----GRVGDVYIPRDRY----------TKE---------------------- 110 (158)
T ss_dssp CBCCEEEEESCCTT-CCHHHHHHHHHHH----SCEEEEECCCCSS----------CTT----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEeecCC----------CCc----------------------
Confidence 46889999999997 8999999999888 6899888743210 000
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
. --||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 111 ---------~-~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 146 (158)
T 2kn4_A 111 ---------S-RGFAFVRFHDKRDAEDAMDAMDGAVLD--GRELRVQM 146 (158)
T ss_dssp ---------S-CCEEEEEESBHHHHHHHHHHSTTEESS--SSEEEEEE
T ss_pred ---------c-ceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEE
Confidence 0 138999999999999999999998875 44554444
No 166
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=85.91 E-value=1.9 Score=35.43 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=52.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.++..|=|.||.|+ ++..||..+|+.| |.|.+|.|-.- +.
T Consensus 9 ~~~~~l~V~~Lp~~-~te~~L~~~F~~~----G~i~~v~i~~~--------------sr--------------------- 48 (89)
T 3d2w_A 9 HHGSKVFVGRCTED-MTAEELQQFFCQY----GEVVDVFIPKP--------------FR--------------------- 48 (89)
T ss_dssp --CCEEEEESCCTT-CCHHHHHHHHTTT----SCEEEEECCSS--------------CC---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhcc----CCEEEEEEeeC--------------CC---------------------
Confidence 47889999999995 7889999999987 88999987430 11
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLR 299 (610)
=||.|+|.+.+.|. .++|..+.-.+..+.+.
T Consensus 49 ------------GfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 49 ------------AFAFVTFADDKVAQ----SLCGEDLIIKGISVHIS 79 (89)
T ss_dssp ------------SEEEEEESCHHHHH----HHTTCEEEETTEEEEEE
T ss_pred ------------CEEEEEECCHHHHH----HHcCCCcccCCEEEEEE
Confidence 28999999999998 46777555444444433
No 167
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.74 E-value=1.8 Score=37.01 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=51.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|+ +...||..+|+.| |.|. |.|....-.. ..|
T Consensus 6 ~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~i~-~~~~~~~~~~-------~~g----------------------- 49 (114)
T 2dnl_A 6 SGSRKVFVGGLPPD-IDEDEITASFRRF----GPLV-VDWPHKAESK-------SYF----------------------- 49 (114)
T ss_dssp SCCCCEEEECCCTT-CCHHHHHHHTTTT----CCCC-EECTTSSSSC-------CCS-----------------------
T ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHhc----CCEE-EEEeecCCCC-------CCC-----------------------
Confidence 46899999999986 7899999999877 5565 4332110000 000
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhc---Ccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRAC---DGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ec---DG~E~E~ 291 (610)
+. -=||.|+|.+.+.|......| +|..+.-
T Consensus 50 --------~~-~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~ 82 (114)
T 2dnl_A 50 --------PP-KGYAFLLFQEESSVQALIDACLEEDGKLYLC 82 (114)
T ss_dssp --------CT-TSEEEECCSSHHHHHHHHHHSEEETTEEEEE
T ss_pred --------Cc-ccEEEEEECCHHHHHHHHHhhhhcCCcEEEe
Confidence 11 238999999999999999888 8876643
No 168
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=85.70 E-value=1.8 Score=42.12 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=58.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|+ +...||..+|+.| | |.+|.| |+.
T Consensus 20 ~~~~~l~V~nLp~~-~te~~l~~~F~~~----G-i~~~~~----------------~~~--------------------- 56 (284)
T 3smz_A 20 RNRRKILIRGLPGD-VTNQEVHDLLSDY----E-LKYCFV----------------DKY--------------------- 56 (284)
T ss_dssp HCCCEEEEECCCTT-CCHHHHHHHTTTS----C-EEEEEE----------------ETT---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHc----C-CEEEEE----------------ecC---------------------
Confidence 36789999999986 8899999999998 6 999988 221
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
-=||.|+|.+.+.|......++|..+.- ..|-+.+
T Consensus 57 -----------~g~afV~f~~~~~A~~A~~~l~~~~~~g--~~i~v~~ 91 (284)
T 3smz_A 57 -----------KGTAFVTLLNGEQAEAAINAFHQSRLRE--RELSVQL 91 (284)
T ss_dssp -----------TTEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred -----------CCEEEEEeCCHHHHHHHHHHcCCCeeCC--eEEEEEe
Confidence 0189999999999999999999998753 4444444
No 169
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=85.66 E-value=1.3 Score=39.46 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=57.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|-||.|+ +...||..+|+.| |.|..| . ..|.+
T Consensus 97 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~----g~v~~~----~-----------~~~~~--------------------- 135 (175)
T 1fje_B 97 RAARTLLAKNLSFN-ITEDELKEVFEDA----LEIRLV----S-----------QDGKS--------------------- 135 (175)
T ss_dssp GGGGEEEEESCCSS-CCHHHHHHHCTTC----SEEEEE----C-----------SSSSC---------------------
T ss_pred ccCCEEEEeCCCCC-CCHHHHHHHHHhc----CeEEEe----c-----------CCCCC---------------------
Confidence 36789999999986 8899999999986 566554 0 11211
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
--||.|+|.+.+.|......++|..+. +..|-++|-
T Consensus 136 -----------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~a 171 (175)
T 1fje_B 136 -----------KGIAYIEFKSEADAEKNLEEKQGAEID--GRSVSLYYT 171 (175)
T ss_dssp -----------CSEEEEECSSHHHHHHHHHHHTEEEET--TEEEEEEEC
T ss_pred -----------ceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEec
Confidence 238999999999999999999998876 455555553
No 170
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.09 E-value=1.9 Score=36.57 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=55.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...+|..+|+.| |.|.+|.|....- .|-
T Consensus 25 ~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~~----------~g~---------------------- 67 (116)
T 1x4b_A 25 EQFRKLFIGGLSFE-TTEESLRNYYEQW----GKLTDCVVMRDPA----------SKR---------------------- 67 (116)
T ss_dssp HHHTEEEEECCTTC-CCHHHHHHHHTSS----CCCSEEEEECCTT----------TSS----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEECCC----------CCC----------------------
Confidence 46799999999996 8999999999876 6788988865311 010
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
--=||.|+|.+.+.|...... +|..+.-
T Consensus 68 ----------~~g~afV~f~~~~~a~~Ai~~-~~~~~~g 95 (116)
T 1x4b_A 68 ----------SRGFGFVTFSSMAEVDAAMAA-RPHSIDG 95 (116)
T ss_dssp ----------CCSEEEEECSSHHHHHHHHTS-CSEEETT
T ss_pred ----------cCceEEEEeCCHHHHHHHHHh-CCcEECC
Confidence 013899999999999999888 8887653
No 171
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=85.08 E-value=3.4 Score=37.29 Aligned_cols=78 Identities=12% Similarity=0.163 Sum_probs=58.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|-||.|+ +...+|..+|+.| |.|.+|.|.+..- .|-
T Consensus 102 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g~---------------------- 144 (196)
T 1l3k_A 102 LTVKKIFVGGIKED-TEEHHLRDYFEQY----GKIEVIEIMTDRG----------SGK---------------------- 144 (196)
T ss_dssp -CCSEEEEECCTTT-CCHHHHHHHHTTT----SCEEEEEEEECTT----------TCC----------------------
T ss_pred CCcceEEEeCCCCC-CCHHHHHHHHhcC----CCeEEEEEeecCC----------CCC----------------------
Confidence 36789999999996 8999999999977 7899999875310 010
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
.--||.|+|.+.+.|...... +|..+. +..|-+++
T Consensus 145 ----------~~g~afV~F~~~~~A~~A~~~-~~~~~~--G~~i~v~~ 179 (196)
T 1l3k_A 145 ----------KRGFAFVTFDDHDSVDKIVIQ-KYHTVN--GHNCEVRK 179 (196)
T ss_dssp ----------EEEEEEEEESSHHHHHHHHHC-SCCEET--TEECEEEE
T ss_pred ----------ccceEEEEECCHHHHHHHHHh-CCcEEC--CEEEEEEe
Confidence 124899999999999998876 676554 34455554
No 172
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=84.91 E-value=1.2 Score=36.31 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=54.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.| |.|..| . ..|..
T Consensus 14 ~~~~~l~V~nL~~~-~t~~~l~~~F~~~----g~v~~~--~-------------~~~~~--------------------- 52 (96)
T 1fjc_A 14 RAARTLLAKNLSFN-ITEDELKEVFEDA----LEIRLV--S-------------QDGKS--------------------- 52 (96)
T ss_dssp TGGGEEEEESCCSS-CCHHHHHHHHCSE----EEECCE--E-------------ETTEE---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhhC----CcEEEe--C-------------CCCCc---------------------
Confidence 47899999999986 6889999999987 455444 0 01111
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
-=||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 53 -----------~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 87 (96)
T 1fjc_A 53 -----------KGIAYIEFKSEADAEKNLEEKQGAEID--GRSVSLYY 87 (96)
T ss_dssp -----------EEEEEEEESSHHHHHHHHHHTTEEEET--TEEEEEEE
T ss_pred -----------ceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEE
Confidence 238999999999999999999998875 34444443
No 173
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.68 E-value=2.8 Score=34.52 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=54.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|.||.|+ +...||..+|+.|+ .|.|..-. ..|
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~~-------~~~~~~~~----------~~~----------------------- 51 (102)
T 2fc8_A 13 QPSKTLFVKGLSED-TTEETLKESFDGSV-------RARIVTDR----------ETG----------------------- 51 (102)
T ss_dssp CCCSSEEEECCCTT-CCHHHHHHTSTTCS-------EEEEEECS----------SSC-----------------------
T ss_pred CCCCEEEEeCCCCc-cCHHHHHHHhcCCe-------EEEEEecC----------CCC-----------------------
Confidence 47899999999995 89999999999651 23332110 000
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
+ --=||.|+|.+.+.|......++|+.+.- ..|-++|
T Consensus 52 --------~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~ 88 (102)
T 2fc8_A 52 --------S-SKGFGFVDFNSEEDAKAAKEAMEDGEIDG--NKVTLDW 88 (102)
T ss_dssp --------S-EEEEEEEECSSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred --------C-cCcEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEE
Confidence 0 12489999999999999999999988763 4444444
No 174
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=84.60 E-value=3.1 Score=35.33 Aligned_cols=77 Identities=16% Similarity=0.250 Sum_probs=54.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|-|.||.| ++...||..+|+.| |.|.+|.|...-. .|-.
T Consensus 23 ~~~~~lfV~nLp~-~~te~~L~~~F~~~----G~i~~v~i~~~~~----------tg~~--------------------- 66 (109)
T 2rs2_A 23 SSGCKMFIGGLSW-QTTQEGLREYFGQF----GEVKECLVMRDPL----------TKRS--------------------- 66 (109)
T ss_dssp ---CCEEEESCCT-TCCHHHHHHHHTTT----SCEEEEEECCCTT----------TCCC---------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHcc----CCeEEEEEEECCC----------CCCc---------------------
Confidence 4788999999998 58999999999987 7899998854210 0100
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLR 299 (610)
-=||.|+|.+.+.|......+ |..+ .+..|-++
T Consensus 67 -----------kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l~V~ 99 (109)
T 2rs2_A 67 -----------RGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTIDPK 99 (109)
T ss_dssp -----------TTCEEEEESSHHHHHHHHHSS-CEEE--TTEEEEEE
T ss_pred -----------CcEEEEEECCHHHHHHHHHHC-CCcC--CCEEEEEE
Confidence 138999999999999999875 5333 34444443
No 175
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.11 E-value=1.9 Score=36.21 Aligned_cols=70 Identities=10% Similarity=0.088 Sum_probs=52.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEE-EEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILS-VAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~-V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
...++|=|.||.|+ ++..||..+|+.| |.|.. |.|....- |
T Consensus 13 ~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~v~~~v~i~~~~~-----------g---------------------- 54 (104)
T 1wg5_A 13 ANDGFVRLRGLPFG-CSKEEIVQFFSGL----EIVPNGMTLPVDFQ-----------G---------------------- 54 (104)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHTTTC----CEEEEEEECCBCSS-----------S----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCcceeEEEEECCC-----------C----------------------
Confidence 36789999999996 6889999999876 56765 66532111 1
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
+. -=||.|+|.+.+.|...... +|..+.-
T Consensus 55 ---------~~-~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 55 ---------RS-TGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp ---------CB-CSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred ---------Cc-ceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 11 13899999999999999987 8877654
No 176
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.91 E-value=0.97 Score=40.24 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=57.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+.+|=|.||.|+ ++-.||..+|+.|.+..|.|.+|.|-.-.-|
T Consensus 21 ~~~~~v~V~nLp~~-~te~dl~~~F~~~g~v~g~v~~v~i~~d~~g---------------------------------- 65 (123)
T 2dha_A 21 ENQVIVRMRGLPFT-ATAEEVVAFFGQHCPITGGKEGILFVTYPDG---------------------------------- 65 (123)
T ss_dssp CSCCEEEECSCCTT-CCHHHHHHHHHTTSCCTTGGGGEEEEECTTS----------------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCccCCcceEEEEECCCC----------------------------------
Confidence 46789999999998 8999999999999887667778877421111
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
|.| =||.|+|.+.+.|...... +|..+.
T Consensus 66 --------r~~-G~aFV~F~~~~~A~~Al~~-~~~~l~ 93 (123)
T 2dha_A 66 --------RPT-GDAFVLFACEEYAQNALRK-HKDLLG 93 (123)
T ss_dssp --------CEE-EEEEECCSSHHHHHHHHTT-TTEESS
T ss_pred --------CEe-eEEEEEECCHHHHHHHHHh-CCCeeC
Confidence 111 2899999999999998886 887664
No 177
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=83.03 E-value=3.5 Score=38.69 Aligned_cols=72 Identities=19% Similarity=0.120 Sum_probs=56.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.++++|=|-||.|+ +.-.+|..+|+.| |.|.+|.|..-.. .|
T Consensus 13 ~p~~tlfVgnLp~~-~te~~L~~~F~~~----G~I~~v~i~~d~~----------tg----------------------- 54 (213)
T 4f02_A 13 YPMASLYVGDLHPD-VTEAMLYEKFSPA----GPILSIRVCRDMI----------TR----------------------- 54 (213)
T ss_dssp --CCEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhh----CCEEEEEEecccC----------CC-----------------------
Confidence 37789999999996 8899999999987 7899999853110 01
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
.-.=||.|+|.+.+.|......++|..+.-
T Consensus 55 ---------~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 55 ---------RSLGYAYVNFQQPADAERALDTMNFDVIKG 84 (213)
T ss_dssp ---------CEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ---------CccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence 013489999999999999999999987653
No 178
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=82.14 E-value=1.5 Score=35.72 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=51.0
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+++|=|-||.| ++...||..+|+.| |.|.+|.|.... ..|
T Consensus 14 ~~~~l~V~nlp~-~~t~~~l~~~F~~~----G~i~~~~~~~~~----------~~g------------------------ 54 (95)
T 2ek1_A 14 GPTVIKVQNMPF-TVSIDEILDFFYGY----QVIPGSVCLKYN----------EKG------------------------ 54 (95)
T ss_dssp -CEEEEEECCCT-TCCHHHHHHHTTTS----CBCTTCCEEEEC----------TTS------------------------
T ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHhc----CCccceEEEEeC----------CCC------------------------
Confidence 568999999999 58999999999876 344433332100 000
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
+ --=||.|+|.+.+.|......++|..+.-
T Consensus 55 -------~-~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 55 -------M-PTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp -------C-EEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred -------C-EeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 1 12489999999999999999999988753
No 179
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=81.18 E-value=5.5 Score=34.10 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=58.5
Q ss_pred CCCCceeEEecc--CCCcc-------chhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCC
Q 007265 172 DNETHRLAIVNM--DWRHV-------KAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSD 242 (610)
Q Consensus 172 ~~~T~RlAvvN~--DWD~i-------~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e 242 (610)
+.+|+=|-|.|| -++-+ --.||...|+.| |.|.+|.|..-.-| ..|++
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~----G~V~~v~i~~~~~~--------~~~~~----------- 58 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY----GLVKSIEIPRPVDG--------VEVPG----------- 58 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT----SCEEEEECCCCBTT--------BCCTT-----------
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc----CCEEEEEEeccCCC--------CCcCC-----------
Confidence 458889999999 22222 235777777755 89999998633211 00111
Q ss_pred CCCchhhhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccccC
Q 007265 243 DEDNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIP 302 (610)
Q Consensus 243 ~~~~e~~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFVP 302 (610)
.=||-|+|.+++.|.+-..+++|..|. +..|=..|.|
T Consensus 59 ---------------------~G~~fV~f~~~~~A~~Ai~~lnG~~f~--GR~i~v~~~~ 95 (105)
T 3v4m_A 59 ---------------------CGKIFVEFTSVFDCQKAMQGLTGRKFA--NRVVVTKYCD 95 (105)
T ss_dssp ---------------------TTEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEEC
T ss_pred ---------------------cEEEEEEECCHHHHHHHHHHhCCCEeC--CCEEEEEEeC
Confidence 228999999999999999999999985 4455555554
No 180
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=80.21 E-value=3.4 Score=33.51 Aligned_cols=68 Identities=25% Similarity=0.352 Sum_probs=50.6
Q ss_pred eeEEeccCCCccchhhHHHHHhhccCCCC--ceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHHH
Q 007265 177 RLAIVNMDWRHVKAVDLLVILSSFLPKDG--QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKL 254 (610)
Q Consensus 177 RlAvvN~DWD~i~A~DL~vlf~SF~P~gG--~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~L 254 (610)
.|=|-||.|+ +.-.||..+|+.| | .|.+|.|..-.. .|
T Consensus 3 ~l~V~nL~~~-~t~~~l~~~F~~~----G~~~v~~v~i~~~~~----------~g------------------------- 42 (90)
T 3p5t_L 3 ALYIGNLTWW-TTDEDLTEAVHSL----GVNDILEIKFFENRA----------NG------------------------- 42 (90)
T ss_dssp -CEEESCCTT-CCHHHHHHHHHTT----TCCCCCCEEEEECTT----------TC-------------------------
T ss_pred EEEEeCCCCC-CCHHHHHHHHHHh----CCCceEEEEEEecCC----------CC-------------------------
Confidence 4678899995 7889999999877 5 678887753210 01
Q ss_pred HHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 255 RAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 255 R~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
+. -=||.|+|.+.+.|....+.++|.++.-
T Consensus 43 ------~~-kG~afV~f~~~~~a~~Ai~~l~g~~~~g 72 (90)
T 3p5t_L 43 ------QS-KGFALVGVGSEASSKKLMDLLPKRELHG 72 (90)
T ss_dssp ------CE-EEEEEECC-CHHHHHHHHHHGGGSCSSS
T ss_pred ------cc-CcEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 11 2389999999999999999999998753
No 181
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=79.96 E-value=1.7 Score=37.97 Aligned_cols=79 Identities=14% Similarity=0.235 Sum_probs=55.7
Q ss_pred CCCCceeEEeccCCCccchhhHHHHHhhccCCCCceEE--EEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhh
Q 007265 172 DNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILS--VAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEI 249 (610)
Q Consensus 172 ~~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~--V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~ 249 (610)
+..+++|-|-||.|+ +.-.||..+|+.| |.|.. |.|..-. ..|
T Consensus 20 ~~~~~~lfV~nL~~~-~te~~L~~~F~~~----G~v~~~~v~i~~d~----------~tg-------------------- 64 (131)
T 2m2b_A 20 ENANDTIILRNLNPH-STMDSILGALAPY----AVLSSSNVRVIKDK----------QTQ-------------------- 64 (131)
T ss_dssp SCCCCEEEECSCCTT-CCSHHHHHHHGGG----CCCCTTTEECCBCS----------SSS--------------------
T ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHHHh----CCcceeeEEEEEcC----------CCC--------------------
Confidence 357889999999996 6899999999977 45544 5443210 000
Q ss_pred hHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcc----ccccccccccccc
Q 007265 250 DEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGV----EFERSSNKLDLRF 300 (610)
Q Consensus 250 d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~----E~E~San~lDLRF 300 (610)
+. -=||.|+|.+. .|......++|. .+. +..|-++|
T Consensus 65 -----------~~-rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~--gr~l~V~~ 104 (131)
T 2m2b_A 65 -----------LN-RGFAFIQLSTI-EAAQLLQILQALHPPLTID--GKTINVEF 104 (131)
T ss_dssp -----------SB-CSCEEEECCHH-HHHHHHHHHTTCCCSCCGG--GCCCCCEE
T ss_pred -----------Cc-ceEEEEEECCH-HHHHHHHHhcCCCCCccCC--CEEEEEEE
Confidence 11 23899999999 999999999998 665 44444443
No 182
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=79.70 E-value=2.5 Score=41.04 Aligned_cols=69 Identities=20% Similarity=0.177 Sum_probs=55.4
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+++|-|.||.|. +...+|..+|+.| |.|.+|.|.+..- |.+
T Consensus 95 ~~~~l~v~nl~~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~-----------g~~---------------------- 136 (261)
T 3sde_A 95 HGAALTVKNLSPV-VSNELLEQAFSQF----GPVEKAVVVVDDR-----------GRA---------------------- 136 (261)
T ss_dssp CSSEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEEEETT-----------SCE----------------------
T ss_pred cCCcccccCCCCC-CCHHHHHHHHHhc----CCeEEEEeeeCCC-----------CCc----------------------
Confidence 5679999999975 6889999999877 7899999876432 221
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
--||.|+|.+.+.|......|+|..|-
T Consensus 137 ----------~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 137 ----------TGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp ----------EEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred ----------CcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 248999999999999999999665544
No 183
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.58 E-value=3.3 Score=32.08 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=49.7
Q ss_pred ceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHHHH
Q 007265 176 HRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKLR 255 (610)
Q Consensus 176 ~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~LR 255 (610)
++|=|.||.|+ +...||..+|+.| |.|.+|.|.+..- .|.+
T Consensus 1 ~~l~v~nlp~~-~t~~~l~~~F~~~----G~v~~v~i~~~~~----------~~~~------------------------ 41 (77)
T 1uaw_A 1 CKMFIGGLSWQ-TTQEGLREYFGQF----GEVKECLVMRDPL----------TKRS------------------------ 41 (77)
T ss_dssp CCEEEESCCSS-CCSHHHHHHHTTT----SCCCCEEEECCCC----------SSSC------------------------
T ss_pred CEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEecCCC----------CCCc------------------------
Confidence 47889999985 8899999999987 6788888754310 0100
Q ss_pred HHHhhcccceEEEEEeCCHHHHHHHHHhcCcccc
Q 007265 256 AYEKSRLRYYYAVVECDSSATADYLYRACDGVEF 289 (610)
Q Consensus 256 ~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~ 289 (610)
-=||.|+|.+.+.|......++ ..+
T Consensus 42 --------~g~afV~f~~~~~a~~a~~~~~-~~~ 66 (77)
T 1uaw_A 42 --------RGFGFVTFMDQAGVDKVLAQSR-HEL 66 (77)
T ss_dssp --------SSEEEECCCCTTHHHHHHHTTT-CCC
T ss_pred --------CceEEEEEcCHHHHHHHHHhCC-Ccc
Confidence 1389999999999999999877 444
No 184
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.21 E-value=2.7 Score=36.38 Aligned_cols=68 Identities=9% Similarity=0.043 Sum_probs=52.1
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+.+|=|-||.|+ ++-.||..+|+.| . |.+|.|-...-|+
T Consensus 15 ~~~~v~V~nLp~~-~te~dl~~~F~~~-~----v~~v~i~~d~~g~---------------------------------- 54 (109)
T 2dnn_A 15 DDLYVSVHGMPFS-AMENDVRDFFHGL-R----VDAVHLLKDHVGR---------------------------------- 54 (109)
T ss_dssp HHHEEEEECCCSS-CCHHHHHHHTTTS-C----CCEEEECCCTTCC----------------------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHhccC-C----eeEEEEEECCCCC----------------------------------
Confidence 5679999999998 7999999999988 3 5677763221111
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
.| =||.|+|.+.+.|.... +++|.++.-
T Consensus 55 --------~~-G~afV~F~~~~~a~~Al-~~~~~~~~g 82 (109)
T 2dnn_A 55 --------NN-GNGLVKFLSPQDTFEAL-KRNRMLMIQ 82 (109)
T ss_dssp --------CC-SEEEEECSSHHHHHHHH-HTTTEEETT
T ss_pred --------CC-eEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 11 28999999999998887 799988754
No 185
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=77.27 E-value=9.5 Score=32.65 Aligned_cols=82 Identities=12% Similarity=0.034 Sum_probs=57.6
Q ss_pred CCCceeEEeccC----CCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchh
Q 007265 173 NETHRLAIVNMD----WRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDE 248 (610)
Q Consensus 173 ~~T~RlAvvN~D----WD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~ 248 (610)
.+|+-|-|.||- |+.-.-.||..+|+-| |.|.+|.|....- .++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~----G~V~~v~i~~~~~----------~~~------------------ 53 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY----GKVGKCVIFEIPG----------APD------------------ 53 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG----SCEEEEEEEECSS----------CCT------------------
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc----CCEEEEEEecCCC----------CCC------------------
Confidence 478899999994 4433467888888755 8999999964310 000
Q ss_pred hhHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 249 IDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 249 ~d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
+. -=||-|+|.+.+.|..-..+++|..|. +..|-..|.
T Consensus 54 ------------~~-~G~~FV~f~~~~~A~~Ai~~lnG~~~~--Gr~i~v~~a 91 (105)
T 2pe8_A 54 ------------DE-AVRIFLEFERVESAIKAVVDLNGRYFG--GRVVKACFY 91 (105)
T ss_dssp ------------TT-SEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred ------------CC-cEEEEEEECCHHHHHHHHHHHCCCEEC--CcEEEEEEc
Confidence 11 148999999999999999999999985 344444444
No 186
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=75.98 E-value=5.2 Score=35.08 Aligned_cols=77 Identities=16% Similarity=0.292 Sum_probs=57.0
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+++|-|-||.| .+...+|..+|+.| |.|.+|.|....- .|.
T Consensus 86 ~~~~l~V~nlp~-~~t~~~l~~~F~~~----G~i~~~~i~~~~~----------~g~----------------------- 127 (167)
T 2cjk_A 86 KTGKIFVGGIGP-DVRPKEFEEFFSQW----GTIIDAQLMLDKD----------TGQ----------------------- 127 (167)
T ss_dssp HCEEEEEEEECT-TCCHHHHHHHHHTT----SCCSEEECCCSSS----------SST-----------------------
T ss_pred CCCeEEECCCCC-CCCHHHHHHHHHhC----ccEEEEEEEEcCC----------CCc-----------------------
Confidence 577999999998 57889999999977 6888988864310 111
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
. --||.|+|.+.+.|.+... .+|..+.- ..|-++|
T Consensus 128 --------~-~g~afV~f~~~~~a~~A~~-~~~~~~~g--~~i~V~~ 162 (167)
T 2cjk_A 128 --------S-RGFGFVTYDSADAVDRVCQ-NKFIDFKD--RKIEIKR 162 (167)
T ss_dssp --------T-SEEEEEEESSHHHHHHHHH-CSEECSSS--SCEEEEE
T ss_pred --------c-ceEEEEEECCHHHHHHHHh-CCCEEeCC--eEEEEee
Confidence 1 1389999999999999987 78877753 4444443
No 187
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.85 E-value=1.8 Score=37.41 Aligned_cols=70 Identities=6% Similarity=-0.014 Sum_probs=50.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEec-ChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYP-SEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYP-SeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
....+|=|.||.|+ +...||..+|+.|- .|.+|.|.+ ..- |
T Consensus 23 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G----~v~~~~~~~~~~~-----------g---------------------- 64 (124)
T 1wel_A 23 EAGFCVYLKGLPFE-AENKHVIDFFKKLD----IVEDSIYIAYGPN-----------G---------------------- 64 (124)
T ss_dssp CCCCEEEEECCCTT-CCHHHHHHHSCSSC----BCTTTCEEEECTT-----------S----------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcC----CccceEEEEECCC-----------C----------------------
Confidence 36689999999997 78899999998763 443322211 000 0
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
+ .-=||.|+|.+.+.|..... ++|..+.-
T Consensus 65 ---------~-~~G~afV~F~~~~~a~~Al~-~~g~~~~g 93 (124)
T 1wel_A 65 ---------K-ATGEGFVEFRNEADYKAALC-RHKQYMGN 93 (124)
T ss_dssp ---------S-EEEEEEEEBSSSHHHHHHHT-SCSBCSTT
T ss_pred ---------C-CCeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 0 12489999999999999998 99988753
No 188
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=74.30 E-value=2.8 Score=37.81 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=53.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
....+|=|-||.|+ ++..||..+|+.|=+.+| |.+|.|-...-|+
T Consensus 42 ~~~~~lfVgnLp~~-~te~dL~~~F~~~G~v~~-v~~v~i~~d~~g~--------------------------------- 86 (136)
T 2hgl_A 42 GEGFVVKLRGLPWS-CSVEDVQNFLSDCTIHDG-AAGVHFIYTREGR--------------------------------- 86 (136)
T ss_dssp CTTCEEEEESCCTT-CCHHHHHHHTTTCCCSSS-STTEEEEECSSSC---------------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCCcCc-eeEEEEEECCCCC---------------------------------
Confidence 35788999999998 799999999998744321 5666653221121
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
.| =||.|+|.+.+.|..... ++|..+.-
T Consensus 87 ---------sr-G~aFV~F~~~e~a~~Al~-~~g~~l~g 114 (136)
T 2hgl_A 87 ---------QS-GEAFVELGSEDDVKMALK-KDRESMGH 114 (136)
T ss_dssp ---------EE-EEEEEECSSHHHHHHHHT-TTEEESSS
T ss_pred ---------CC-eEEEEEECCHHHHHHHHh-cCCCEECC
Confidence 11 289999999999999988 99987753
No 189
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=73.64 E-value=3.5 Score=31.88 Aligned_cols=66 Identities=5% Similarity=0.063 Sum_probs=48.0
Q ss_pred eeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHHHHH
Q 007265 177 RLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKLRA 256 (610)
Q Consensus 177 RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~LR~ 256 (610)
||-|-||.|+ +...||..+|+.| |.|.+|.|-+..- .|.+
T Consensus 1 ~l~v~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~~~------------------------- 40 (75)
T 1iqt_A 1 KIFVGGLSPD-TPEEKIREYFGGF----GEVESIELPMDNK----------TNKR------------------------- 40 (75)
T ss_dssp CEEESCCCSS-CCHHHHHHHHHHH----SCCSEECCCCSCC----------CSSS-------------------------
T ss_pred CEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CCCc-------------------------
Confidence 5778899997 8999999999987 5677776532100 0100
Q ss_pred HHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 257 YEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 257 YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
-=||.|+|.+.+.|...... +|..+.
T Consensus 41 -------~g~afV~f~~~~~a~~Ai~~-~~~~~~ 66 (75)
T 1iqt_A 41 -------RGFCFITFKEEEPVKKIMEK-KYHNVG 66 (75)
T ss_dssp -------CCCEEEECSSSHHHHHHHTT-SSCCBT
T ss_pred -------CCEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 13899999999999999985 776653
No 190
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=72.69 E-value=4.1 Score=33.53 Aligned_cols=70 Identities=16% Similarity=0.085 Sum_probs=50.1
Q ss_pred CceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHHH
Q 007265 175 THRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKL 254 (610)
Q Consensus 175 T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~L 254 (610)
|+.|=|-||.|+ +.-.||..+|+.| |+.|.+|.|-... ..|.+
T Consensus 1 S~~i~v~nLp~~-~te~~l~~~F~~~---G~~v~~v~i~~d~----------~t~~~----------------------- 43 (91)
T 2lxi_A 1 SNIVMLRMLPQA-ATEDDIRGQLQSH---GVQAREVRLMRNK----------SSGQS----------------------- 43 (91)
T ss_dssp CCEEEEETCCSS-CCHHHHHHHHHHH---TCCCSBCCSSSCS----------SSCCC-----------------------
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHHh---CCEeEEEEEEecC----------CCCCc-----------------------
Confidence 678999999996 8999999999988 2256666552110 01111
Q ss_pred HHHHhhcccceEEEEEeCCHHHHHHHHHhc-Cccccc
Q 007265 255 RAYEKSRLRYYYAVVECDSSATADYLYRAC-DGVEFE 290 (610)
Q Consensus 255 R~YQl~RLRYYYAVvecdS~~TA~~IY~ec-DG~E~E 290 (610)
-=||.|+|.+.+.|....+.+ .|+.+.
T Consensus 44 ---------rg~aFV~F~~~~~A~~Ai~~~~~~~~~~ 71 (91)
T 2lxi_A 44 ---------RGFAFVEFSHLQDATRWMEANQHSLNIL 71 (91)
T ss_dssp ---------SSEEEEECSSHHHHHHHHHTTTTEEEET
T ss_pred ---------CceEEEEecCHHHHHHHHHhcCCCeEEC
Confidence 238999999999999988876 455553
No 191
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=69.57 E-value=12 Score=33.01 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=59.8
Q ss_pred CCceeEEecc----CCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhh
Q 007265 174 ETHRLAIVNM----DWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEI 249 (610)
Q Consensus 174 ~T~RlAvvN~----DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~ 249 (610)
+|+=|-|.|| +|+.=--.||.-.|+.| |.|.+|.|+.-.-|. .|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~----G~V~~v~I~~~~~~~--------~~~~------------------ 68 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF----GAVNRVIIYQEKQGE--------EEDA------------------ 68 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT----SCEEEEEEEEEEESS--------STTC------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc----CCEeEEEEeecCCCc--------ccCC------------------
Confidence 7888999999 45432346777787755 899999998532221 0000
Q ss_pred hHHHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccccCC
Q 007265 250 DEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPD 303 (610)
Q Consensus 250 d~e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFVPD 303 (610)
+. -=||-|+|.+++.|.+...+++|..|. +..|=..|.|.
T Consensus 69 -----------~~-~G~~FV~F~~~e~A~~Ai~~LnGr~f~--GR~i~v~~~~~ 108 (118)
T 3ue2_A 69 -----------EI-IVKIFVEFSIASETHKAIQALNGRWFA--GRKVVAEVYDQ 108 (118)
T ss_dssp -----------EE-EEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEECH
T ss_pred -----------cc-eEEEEEEECCHHHHHHHHHHHCCCEEC--CcEEEEEEcCh
Confidence 01 127999999999999999999999884 45555666553
No 192
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=69.56 E-value=9.8 Score=33.26 Aligned_cols=63 Identities=11% Similarity=0.328 Sum_probs=49.0
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
.+++|=|-||.|+ +...+|..+|+.| |.|.+|.|....- .|-
T Consensus 2 ~~~~l~v~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g~----------------------- 43 (167)
T 2cjk_A 2 ESCKMFIGGLNWD-TTEDNLREYFGKY----GTVTDLKIMKDPA----------TGR----------------------- 43 (167)
T ss_dssp GGGEEEECSCCTT-CCHHHHHHHHTTT----CCEEEEECCCCTT----------TSS-----------------------
T ss_pred CCcEEEEeCCCCC-CCHHHHHHHHHhC----CCEEEEEEEECCC----------CCC-----------------------
Confidence 5789999999994 7999999999987 7899998754210 010
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHh
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRA 283 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~e 283 (610)
--=||.|+|.+.+.|......
T Consensus 44 ---------~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 44 ---------SRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp ---------CCSCEEEEESSTHHHHHHHHS
T ss_pred ---------ccceEEEEEccHHHHHHHHhc
Confidence 123899999999999998886
No 193
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=69.14 E-value=8.7 Score=36.19 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=50.1
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
..+.|-|.||.|+ +...+|..+|+.| |.|.+|.|-... .|-
T Consensus 108 ~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~v~~v~i~~~~-----------~~~----------------------- 148 (193)
T 2voo_A 108 KNRSVYIKGFPTD-ATLDDIKEWLEDK----GQVLNIQMRRTL-----------HKA----------------------- 148 (193)
T ss_dssp HHTEEEEECCCTT-CCHHHHHHHHTTS----CCEEEEEEEECT-----------TCC-----------------------
T ss_pred ccCEEEecCCCCc-CCHHHHHHHHhcC----CCEEEEEEEECC-----------CCC-----------------------
Confidence 3578999999998 8889999999987 789999885421 010
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcC
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACD 285 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecD 285 (610)
. -=||.|+|.+.+.|........
T Consensus 149 --------~-kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 149 --------F-KGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp --------E-EEEEEEEESSHHHHHHHHHCTT
T ss_pred --------c-ccEEEEEECCHHHHHHHHHhCC
Confidence 0 1289999999999999987653
No 194
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.15 E-value=5.9 Score=33.38 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=50.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
...++|=|-||.|+ ++..||..+|+.| |.| +|.|..-. .|
T Consensus 13 ~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~~-~v~i~~d~-----------~g----------------------- 52 (102)
T 1wez_A 13 TTGHCVHMRGLPYR-ATENDIYNFFSPL----NPM-RVHIEIGP-----------DG----------------------- 52 (102)
T ss_dssp SSSCEEEEESCCTT-CCHHHHHHSSCSC----CCS-EEEEEESS-----------SS-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHc----Cce-EEEEEECC-----------CC-----------------------
Confidence 36789999999998 7889999988865 333 77764211 01
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
+. -=||.|+|.+.+.|.... +++|..+.-
T Consensus 53 --------~~-~G~afV~F~~~~~a~~Al-~~~~~~~~g 81 (102)
T 1wez_A 53 --------RV-TGEADVEFATHEDAVAAM-AKDKANMQH 81 (102)
T ss_dssp --------CE-EEEEEEECSSSHHHHHHH-TTSSCCSSS
T ss_pred --------CE-eeEEEEEECCHHHHHHHH-HhCCCeECC
Confidence 11 238999999999999888 579987754
No 195
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=62.14 E-value=11 Score=33.66 Aligned_cols=68 Identities=9% Similarity=0.082 Sum_probs=49.2
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceE-EEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQIL-SVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~-~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
.+++|=|.||.|+ ++..||..+|+.| |.+. +|.|-.-.-|+
T Consensus 41 ~~~~lfVgnLp~~-~te~dL~~~F~~~----~i~~~~v~i~~d~~Gr--------------------------------- 82 (126)
T 2hgm_A 41 NDGFVRLRGLPFG-CTKEEIVQFFSGL----EIVPNGITLPVDPEGK--------------------------------- 82 (126)
T ss_dssp SCCEEEEECCCTT-CCHHHHHHHTTTS----CEEEEEEECCCCSSSS---------------------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHhcC----CceeeEEEEEECCCCC---------------------------------
Confidence 5678999999998 8899999999988 2332 66653211121
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
.| =||.|+|.+.+.|...... +|..+.
T Consensus 83 ---------sr-GfaFV~F~~~e~A~~Al~~-~~~~l~ 109 (126)
T 2hgm_A 83 ---------IT-GEAFVQFASQELAEKALGK-HKERIG 109 (126)
T ss_dssp ---------SC-SEEEEEESSTTHHHHHHTT-TTCCBT
T ss_pred ---------Cc-eEEEEEECCHHHHHHHHHH-CCCEEC
Confidence 11 2899999999999988874 776554
No 196
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.10 E-value=22 Score=30.35 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=43.2
Q ss_pred ccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHHHHHHHhhcccceE
Q 007265 187 HVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKLRAYEKSRLRYYY 266 (610)
Q Consensus 187 ~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~LR~YQl~RLRYYY 266 (610)
++.-.||..+|+-| |.|..|.|- | -+ -=|
T Consensus 28 ~~te~~L~~~F~~~----G~V~~v~i~----~----------~~---------------------------------rGf 56 (100)
T 2d9o_A 28 GYSKDVLLRLLQKY----GEVLNLVLS----S----------KK---------------------------------PGT 56 (100)
T ss_dssp SCCHHHHHHHHHTT----SCEEEEEEE----S----------SS---------------------------------SSE
T ss_pred CCCHHHHHHHHHhc----CCEEEEEEc----c----------CC---------------------------------CCE
Confidence 36789999999977 789999885 1 01 128
Q ss_pred EEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 267 AVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 267 AVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
|.|+|.+.+.|........|+ .+..|-+.|
T Consensus 57 aFVeF~~~~~A~~Ai~~~~~~----~g~~l~V~~ 86 (100)
T 2d9o_A 57 AVVEFATVKAAELAVQNEVGL----VDNPLKISW 86 (100)
T ss_dssp EEEEESCHHHHHHHHHTCCBC----SSSBCEEEC
T ss_pred EEEEECCHHHHHHHHHhcCCC----CCCeEEEEE
Confidence 999999999999998886553 244444444
No 197
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=57.69 E-value=5.8 Score=35.91 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=50.3
Q ss_pred CCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHHH
Q 007265 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (610)
Q Consensus 174 ~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e~ 253 (610)
..++|=|.||.|+ ++..||..+|+.| | |.+|.|-.-.-|
T Consensus 45 ~~~~lfV~nLp~~-~te~dL~~~F~~~----G-i~~v~i~~d~~g----------------------------------- 83 (139)
T 2hgn_A 45 TGHCVHMRGLPYK-ATENDIYNFFSPL----N-PVRVHIEIGPDG----------------------------------- 83 (139)
T ss_dssp CCCCEECCSCCTT-CCHHHHHHHHCSC----C-CSEEECCCSSSS-----------------------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhc----C-CeEEEEEECCCC-----------------------------------
Confidence 5678999999997 7899999999976 4 446665321001
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccc
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~ 291 (610)
+.| =||.|+|.+.+.|.... +++|..+.-
T Consensus 84 -------~sr-GfaFV~F~~~e~A~~Al-~~~g~~l~g 112 (139)
T 2hgn_A 84 -------RVT-GEADVEFATHEEAVAAM-SKDRANMQH 112 (139)
T ss_dssp -------CSS-CCCEEECSHHHHHHHHT-TCCSCSSSS
T ss_pred -------CCc-eEEEEEeCCHHHHHHHH-hhCCCEECC
Confidence 111 28999999999999888 889987654
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=56.14 E-value=15 Score=32.60 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=56.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCC-ceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG-QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG-~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
..+++|=|-||.|+ +...||..+|+.|-+.-| .|..+. .|..
T Consensus 11 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~g~~~~~~~~~~~----------------~~~~-------------------- 53 (175)
T 1fje_B 11 TTPFNLFIGNLNPN-KSVAELKVAISELFAKNDLAVVDVR----------------TGTN-------------------- 53 (175)
T ss_dssp SSSEEEEEECCCTT-SCHHHHHHHHHHHHHHHTCCCCEEE----------------EETT--------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHhCCcceEEEEECC----------------CCcc--------------------
Confidence 47899999999995 899999999998865444 222221 0111
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFV 301 (610)
-=||.|+|.+.+.|.... +++|+.+. +..|-+++.
T Consensus 54 ------------~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~v~~~ 88 (175)
T 1fje_B 54 ------------RKFGYVDFESAEDLEKAL-ELTGLKVF--GNEIKLEKP 88 (175)
T ss_dssp ------------TTEEEEEESSHHHHHHHH-HGGGEEET--TEEEEEECC
T ss_pred ------------ccEEEEEECCHHHHHHHH-hcCCCEeC--CeEEEEecC
Confidence 128999999999999999 69999887 455555443
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=53.10 E-value=10 Score=32.25 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=28.3
Q ss_pred EEEEEeCCHHHHHHHHHhcCccccccccccccccccC
Q 007265 266 YAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIP 302 (610)
Q Consensus 266 YAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFVP 302 (610)
||-|+|.+.+.|.+...+++|..|. +..|-..|.|
T Consensus 70 ~~fV~f~~~~~A~~A~~~lng~~~~--Gr~i~v~~sp 104 (104)
T 1jmt_A 70 NVYVKFRREEDAEKAVIDLNNRWFN--GQPIHAELSP 104 (104)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEET--TEECCEEECC
T ss_pred EEEEEECCHHHHHHHHHHHCCCEEC--CEEEEEEEcC
Confidence 8999999999999999999999875 3444444444
No 200
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=47.84 E-value=16 Score=29.94 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=52.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..+++|=|-||.|+ +...||..+|+.|-+ |.++ .+.+..
T Consensus 15 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~----v~~~---------------------~~~~~~--------------- 53 (101)
T 1fj7_A 15 TTPFNLFIGNLNPN-KSVAELKVAISELFA----KNDL---------------------AVVDVR--------------- 53 (101)
T ss_dssp SCSEEEEEECCCTT-SCHHHHHHHHHHHHH----HHTC---------------------CCCEEE---------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCC----cceE---------------------EEecCC---------------
Confidence 36789999999995 788999999987743 1110 011000
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRF 300 (610)
..+. -=||.|+|.+.+.|..... ++|..+. +..|-+++
T Consensus 54 ------~g~~-~g~afV~f~~~~~a~~A~~-l~g~~~~--g~~l~V~~ 91 (101)
T 1fj7_A 54 ------TGTN-RKFGYVDFESAEDLEKALE-LTGLKVF--GNEIKLEK 91 (101)
T ss_dssp ------EETT-TTEEEEEESSHHHHHHHHH-GGGCCBT--TBCCEEEC
T ss_pred ------CCCc-CcEEEEEECCHHHHHHHHh-cCCcEEC--CcEEEEEE
Confidence 0011 1289999999999999998 9999887 44444443
No 201
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=41.18 E-value=16 Score=33.07 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=23.9
Q ss_pred EEEEEeCCHHHHHHHHHhcCccccc
Q 007265 266 YAVVECDSSATADYLYRACDGVEFE 290 (610)
Q Consensus 266 YAVvecdS~~TA~~IY~ecDG~E~E 290 (610)
=|||+|.++.+|-+.-=++||.+|+
T Consensus 64 GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 64 GAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHSSEEET
T ss_pred ceEEEEccchhhHHHHhhcCCeeec
Confidence 4999999999999999999999998
No 202
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.54 E-value=26 Score=30.57 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=51.0
Q ss_pred CCce-eEEeccCCCccchhhHHH-HHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhH
Q 007265 174 ETHR-LAIVNMDWRHVKAVDLLV-ILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (610)
Q Consensus 174 ~T~R-lAvvN~DWD~i~A~DL~v-lf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~ 251 (610)
++.- |=|-||.|+ ++..+|-. |..-|-+-||.|++|+ | |
T Consensus 7 p~~T~lYV~NL~~~-~~~~~lk~~L~~lF~~yGG~Vl~Vt------g----------G---------------------- 47 (96)
T 2diu_A 7 GCHTLLYVYNLPAN-KDGKSVSNRLRRLSDNCGGKVLSIT------G----------C---------------------- 47 (96)
T ss_dssp CSSEEEEEESCCTT-SCHHHHHHHHHHHHHTTTCCEEECC------T----------T----------------------
T ss_pred CcceEEEEeCCCCc-CCHHHHHHHHHHHHHHcCCeeEEEe------c----------C----------------------
Confidence 4455 669999996 45555332 3334446678999993 1 2
Q ss_pred HHHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccccccccccc
Q 007265 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKL 296 (610)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E~E~San~l 296 (610)
+|.|+|.+++.|..-+++++|.++---...+
T Consensus 48 --------------~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 48 --------------SAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp --------------CEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred --------------EEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 7999999999999999999999987554443
No 203
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=28.34 E-value=25 Score=29.45 Aligned_cols=71 Identities=13% Similarity=0.182 Sum_probs=50.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhhccCCCCceEEEEEecChhhHHHHHHHHhcCCCCccCCCCCCCCCCCchhhhHH
Q 007265 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (610)
Q Consensus 173 ~~T~RlAvvN~DWD~i~A~DL~vlf~SF~P~gG~i~~V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~e~~~~e~~d~e 252 (610)
..-+.|=|-||.| ++...+|..+|+.|-+. .|.+|.|..-. ..|
T Consensus 7 ~~m~tlfV~nL~~-~~tee~L~~~F~~~G~i--~v~~v~i~~d~----------~tg----------------------- 50 (95)
T 2lkz_A 7 HHMDTIILRNIAP-HTVVDSIMTALSPYASL--AVNNIRLIKDK----------QTQ----------------------- 50 (95)
T ss_dssp CCCCEEEEESCCT-TCCHHHHHHHSTTTCCC--CGGGEECCCCS----------SSS-----------------------
T ss_pred CccCEEEEeCCCC-cCCHHHHHHHHHhhCCc--cEEEEEEEecC----------CCC-----------------------
Confidence 4567799999999 68999999999987432 24445442100 000
Q ss_pred HHHHHHhhcccceEEEEEeCCHHHHHHHHHhcCccc
Q 007265 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVE 288 (610)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecdS~~TA~~IY~ecDG~E 288 (610)
+. -=||-|+|.+.+.|....+.|+|++
T Consensus 51 --------~s-rG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 51 --------QN-RGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp --------SC-SSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred --------CC-ceEeEEEECCHHHHHHHHHHhcCCC
Confidence 01 1289999999999999999999986
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=22.47 E-value=48 Score=28.87 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=30.6
Q ss_pred EEEEEeCCHHHHHHHHHhcCccccccccccccccccCC
Q 007265 266 YAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPD 303 (610)
Q Consensus 266 YAVvecdS~~TA~~IY~ecDG~E~E~San~lDLRFVPD 303 (610)
||.|+|.+.+.|..-..+++|..|. +..|=..|.|.
T Consensus 57 ~~fV~f~~~e~A~~Ai~~lnG~~f~--GR~i~v~~~~~ 92 (114)
T 3s6e_A 57 NVYVKCPSIAAAIAAVNALHGRWFA--GKMITAAYVPL 92 (114)
T ss_dssp CEEEECSSHHHHHHHHHHHTTCEET--TEECEEEEECH
T ss_pred EEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEEEEcH
Confidence 6899999999999999999999985 56666677654
No 205
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=21.81 E-value=19 Score=34.77 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHhhcccceEEEEEeCCHHHHH
Q 007265 254 LRAYEKSRLRYYYAVVECDSSATAD 278 (610)
Q Consensus 254 LR~YQl~RLRYYYAVvecdS~~TA~ 278 (610)
+|...++.|+||.||++|-|...|.
T Consensus 11 ~~~m~l~~L~~f~~v~~~gs~t~AA 35 (315)
T 1uth_A 11 LRDIDLNLLVVFNQLLLDRSVSTAG 35 (315)
T ss_dssp -------------------------
T ss_pred cccCCHHHHHHHHHHHHcCCHHHHH
Confidence 6778899999999999999987664
Done!