Query 007267
Match_columns 610
No_of_seqs 197 out of 843
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 21:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eh2_A Protein transport prote 100.0 2E-114 5E-119 988.1 47.9 570 2-610 45-766 (766)
2 3efo_B SEC24 related gene fami 100.0 2E-114 7E-119 987.4 48.2 569 2-609 49-769 (770)
3 3eh1_A Protein transport prote 100.0 6E-114 2E-118 980.0 49.5 557 2-607 42-751 (751)
4 1m2o_A SEC23, protein transpor 100.0 4E-109 1E-113 947.1 40.1 580 2-607 11-765 (768)
5 1m2v_B SEC24, protein transpor 100.0 1E-107 4E-112 940.8 47.0 560 1-607 180-926 (926)
6 1pcx_A Protein transport prote 100.0 1E-107 4E-112 938.0 45.7 561 1-607 64-810 (810)
7 2nut_A Protein transport prote 100.0 2E-106 5E-111 924.9 44.6 578 2-607 20-766 (769)
8 2yrc_A Protein transport prote 99.4 3.6E-14 1.2E-18 106.7 2.0 41 47-87 6-50 (59)
9 4fx5_A VON willebrand factor t 99.2 8.2E-09 2.8E-13 111.8 26.6 249 123-456 79-347 (464)
10 3ibs_A Conserved hypothetical 98.9 2.2E-08 7.4E-13 97.1 16.6 157 120-360 10-197 (218)
11 4b4t_W RPN10, 26S proteasome r 98.8 5.4E-08 1.9E-12 96.8 12.8 148 123-353 5-163 (268)
12 1ijb_A VON willebrand factor; 98.7 1.1E-06 3.8E-11 84.2 18.3 163 121-362 13-182 (202)
13 2x5n_A SPRPN10, 26S proteasome 98.6 6.3E-07 2.1E-11 85.3 13.3 145 123-351 4-159 (192)
14 1v7p_C Integrin alpha-2; snake 98.5 1.7E-06 5.7E-11 82.6 16.0 163 121-362 6-182 (200)
15 2b2x_A Integrin alpha-1; compu 98.5 2.2E-06 7.6E-11 83.3 16.6 162 121-362 22-198 (223)
16 1n3y_A Integrin alpha-X; alpha 98.5 1.4E-06 4.9E-11 82.7 14.8 174 121-374 9-193 (198)
17 1atz_A VON willebrand factor; 98.5 5.7E-06 1.9E-10 78.1 18.0 159 121-362 5-171 (189)
18 1mf7_A Integrin alpha M; cell 98.5 2.7E-06 9.2E-11 80.7 15.0 175 121-374 5-189 (194)
19 1pt6_A Integrin alpha-1; cell 98.4 3.1E-06 1.1E-10 81.6 15.0 176 121-375 7-197 (213)
20 2x31_A Magnesium-chelatase 60 98.4 1E-08 3.5E-13 97.1 -2.6 163 121-359 5-172 (189)
21 1q0p_A Complement factor B; VO 98.4 2.8E-06 9.5E-11 82.2 14.6 171 120-361 14-205 (223)
22 2odp_A Complement C2; C3/C5 co 98.4 2.1E-06 7.1E-11 94.2 15.1 177 121-373 9-209 (509)
23 4hqf_A Thrombospondin-related 98.4 5.1E-06 1.7E-10 83.8 16.8 165 121-362 21-196 (281)
24 4hqo_A Sporozoite surface prot 98.4 1.2E-05 4.3E-10 80.3 18.1 179 121-378 18-206 (266)
25 1shu_X Anthrax toxin receptor 98.3 2.5E-05 8.6E-10 72.8 18.2 153 121-354 6-160 (182)
26 1mjn_A Integrin alpha-L; rossm 98.3 2.8E-05 9.5E-10 72.7 17.9 163 122-371 3-176 (179)
27 1rrk_A Complement factor B; BB 98.3 1.1E-05 3.9E-10 88.0 16.1 164 123-361 3-191 (497)
28 3n2n_F Anthrax toxin receptor 98.2 1.6E-05 5.4E-10 74.4 14.1 158 122-360 8-168 (185)
29 3zqk_A VON willebrand factor; 98.1 3.8E-05 1.3E-09 73.1 14.9 152 121-362 21-180 (199)
30 3hrz_D Complement factor B; se 98.1 5.6E-06 1.9E-10 95.1 9.5 177 123-361 245-433 (741)
31 2xgg_A Microneme protein 2; A/ 98.1 8.9E-05 3E-09 69.2 15.9 145 121-344 17-168 (178)
32 1jey_B KU80; double-strand DNA 97.8 4.3E-05 1.5E-09 84.8 10.0 196 122-387 8-254 (565)
33 3k6s_A Integrin alpha-X; cell 97.7 6.5E-05 2.2E-09 89.3 9.8 160 123-362 132-301 (1095)
34 1kcq_A Gelsolin, brevin, ADF, 96.5 0.0094 3.2E-07 50.2 8.6 66 506-578 25-91 (104)
35 3rag_A Uncharacterized protein 96.4 0.017 5.9E-07 56.0 10.6 45 121-165 134-182 (242)
36 1svq_A Severin; actin-binding; 95.8 0.013 4.6E-07 50.2 6.0 65 507-578 36-102 (114)
37 2ww8_A RRGA, cell WALL surface 95.6 0.039 1.3E-06 63.9 10.4 153 121-284 224-394 (893)
38 3fcs_B Integrin beta-3; beta p 95.5 0.46 1.6E-05 53.3 18.5 231 122-396 112-370 (690)
39 3t3p_B Integrin beta-3; integr 95.2 1.9 6.4E-05 45.8 21.0 230 121-396 111-370 (472)
40 1yvr_A RO autoantigen, 60-kDa 95.0 0.062 2.1E-06 58.9 9.6 103 120-283 367-475 (538)
41 1jey_A KU70; double-strand DNA 94.9 0.21 7.3E-06 55.5 13.4 155 123-337 37-208 (609)
42 3vi3_B Integrin beta-1; beta p 94.0 3.5 0.00012 43.4 19.5 198 122-353 122-334 (454)
43 2fh1_A Gelsolin; calcium, cont 92.7 0.13 4.3E-06 53.0 6.0 65 507-577 255-322 (344)
44 3v4v_B Integrin beta-7; cell a 92.4 13 0.00045 39.6 21.7 262 123-430 134-426 (503)
45 3fg7_A Villin-1; actin binding 92.1 0.2 6.8E-06 52.6 6.6 65 507-577 308-375 (398)
46 2nvo_A RO sixty-related protei 91.6 0.71 2.4E-05 50.4 10.6 103 120-283 361-471 (535)
47 3fg6_A Adseverin, scinderin; C 91.3 0.1 3.6E-06 54.2 3.4 64 507-576 296-362 (371)
48 1j72_A Macrophage capping prot 90.7 0.35 1.2E-05 49.8 6.6 57 507-569 276-336 (347)
49 3k6s_B Integrin beta-2; cell r 88.2 1.7 5.7E-05 48.7 10.1 198 121-359 104-324 (687)
50 1j72_A Macrophage capping prot 88.2 1 3.5E-05 46.2 7.9 66 506-578 158-224 (347)
51 1d0n_A Horse plasma gelsolin; 86.8 0.67 2.3E-05 52.6 6.0 90 479-577 611-707 (729)
52 3rag_A Uncharacterized protein 81.4 3.1 0.00011 40.1 7.2 61 270-359 11-75 (242)
53 1d0n_A Horse plasma gelsolin; 80.9 2.7 9.4E-05 47.5 7.7 66 506-578 156-222 (729)
54 2iue_A Pactolus I-domain; memb 78.4 2.5 8.5E-05 40.0 5.3 43 123-165 5-51 (212)
55 2fh1_A Gelsolin; calcium, cont 76.0 3.5 0.00012 42.1 6.1 58 507-577 150-207 (344)
56 2a20_A Regulating synaptic mem 74.9 0.57 1.9E-05 34.2 -0.1 23 52-78 35-59 (62)
57 3fg6_A Adseverin, scinderin; C 69.0 8 0.00027 39.9 6.9 58 507-577 191-249 (371)
58 2j9u_B VPS36, vacuolar protein 68.0 0.98 3.4E-05 34.8 -0.2 17 69-85 16-32 (76)
59 1vq8_Z 50S ribosomal protein L 57.4 6.4 0.00022 31.2 2.7 29 51-81 28-56 (83)
60 2gmg_A Hypothetical protein PF 56.6 2.5 8.5E-05 35.0 0.2 34 49-85 66-99 (105)
61 1gh9_A 8.3 kDa protein (gene M 55.6 1.9 6.6E-05 33.1 -0.6 32 49-84 3-34 (71)
62 1s24_A Rubredoxin 2; electron 54.0 2.9 0.0001 33.4 0.2 30 50-79 35-77 (87)
63 6rxn_A Rubredoxin; electron tr 52.4 2.9 9.8E-05 29.2 -0.1 29 51-79 5-39 (46)
64 1yk4_A Rubredoxin, RD; electro 48.3 4.2 0.00015 29.2 0.3 28 52-79 4-44 (52)
65 3fg7_A Villin-1; actin binding 46.0 4.3 0.00015 42.3 0.0 54 507-571 204-257 (398)
66 4rxn_A Rubredoxin; electron tr 46.0 4.5 0.00015 29.3 0.1 28 52-79 5-45 (54)
67 2akl_A PHNA-like protein PA012 43.4 14 0.00048 31.6 2.7 29 49-80 26-54 (138)
68 1yuz_A Nigerythrin; rubrythrin 41.7 8.7 0.0003 36.0 1.4 25 51-80 172-196 (202)
69 3j20_Y 30S ribosomal protein S 40.0 17 0.00059 25.7 2.4 25 51-79 20-46 (50)
70 1b3t_A Protein (nuclear protei 39.2 29 0.00099 29.3 4.0 33 135-167 110-145 (147)
71 2v3b_B Rubredoxin 2, rubredoxi 39.2 6.6 0.00023 28.5 0.1 11 69-79 35-45 (55)
72 2kn9_A Rubredoxin; metalloprot 38.4 6.8 0.00023 30.8 0.1 30 50-79 27-69 (81)
73 1pft_A TFIIB, PFTFIIBN; N-term 37.7 34 0.0012 23.8 3.8 27 50-79 5-33 (50)
74 1dx8_A Rubredoxin; electron tr 37.6 7.4 0.00025 29.8 0.2 29 51-79 8-49 (70)
75 1e8j_A Rubredoxin; iron-sulfur 37.6 6.2 0.00021 28.3 -0.3 11 69-79 35-45 (52)
76 2zet_C Melanophilin; complex, 35.1 11 0.00036 33.7 0.8 32 50-81 85-119 (153)
77 4gat_A Nitrogen regulatory pro 34.4 12 0.00042 28.2 0.9 31 48-78 7-38 (66)
78 2lk0_A RNA-binding protein 5; 32.7 11 0.00039 23.9 0.4 14 69-82 4-17 (32)
79 1wg8_A Predicted S-adenosylmet 30.5 23 0.00078 34.9 2.4 30 135-164 207-236 (285)
80 1x0t_A Ribonuclease P protein 30.0 15 0.00053 31.2 0.9 33 51-83 66-107 (120)
81 2kdx_A HYPA, hydrogenase/ureas 29.9 15 0.00053 31.0 0.9 27 51-81 74-101 (119)
82 3tka_A Ribosomal RNA small sub 28.0 26 0.00089 35.5 2.3 30 135-164 248-277 (347)
83 3gj5_B Nuclear pore complex pr 27.2 18 0.00062 23.4 0.7 18 67-84 4-21 (34)
84 1zbd_B Rabphilin-3A; G protein 26.8 24 0.00082 30.6 1.6 31 51-81 73-109 (134)
85 1gnf_A Transcription factor GA 26.7 11 0.00036 26.3 -0.6 31 48-78 2-33 (46)
86 2apo_B Ribosome biogenesis pro 26.2 26 0.00088 25.9 1.4 27 49-83 5-31 (60)
87 2hgo_A CASSIICOLIN; toxin, dis 25.7 23 0.00077 20.7 0.8 25 52-76 2-27 (27)
88 2k1p_A Zinc finger RAN-binding 24.6 18 0.0006 23.2 0.2 14 69-82 5-18 (33)
89 1wii_A Hypothetical UPF0222 pr 23.9 17 0.0006 28.8 0.1 17 68-84 21-37 (85)
90 2k4x_A 30S ribosomal protein S 23.9 36 0.0012 24.5 1.8 27 51-79 19-45 (55)
91 2csz_A Synaptotagmin-like prot 23.8 25 0.00085 27.2 1.0 30 50-79 42-73 (76)
92 1nj3_A NPL4; NZF domain, rubre 23.0 25 0.00086 21.9 0.7 15 69-83 5-19 (31)
93 4hc9_A Trans-acting T-cell-spe 22.8 17 0.00057 30.7 -0.2 30 49-78 4-34 (115)
94 3j21_g 50S ribosomal protein L 22.3 27 0.00093 24.8 0.9 28 50-83 14-41 (51)
95 2k3r_A Ribonuclease P protein 22.1 22 0.00074 30.4 0.4 34 51-84 61-103 (123)
96 2avu_E Flagellar transcription 22.1 21 0.00072 32.9 0.3 27 50-77 134-161 (192)
97 1m6y_A S-adenosyl-methyltransf 21.1 32 0.0011 34.1 1.5 30 135-164 219-248 (301)
98 4ayb_P DNA-directed RNA polyme 21.0 21 0.00071 24.8 0.0 10 70-79 23-32 (48)
99 1w7p_D VPS36P, YLR417W; ESCRT- 20.3 22 0.00074 38.6 0.0 17 69-85 116-132 (566)
100 3mjh_B Early endosome antigen 20.1 36 0.0012 22.0 1.0 16 70-85 5-20 (34)
101 2vut_I AREA, nitrogen regulato 20.0 22 0.00074 24.3 -0.0 29 50-78 1-30 (43)
No 1
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.5e-114 Score=988.14 Aligned_cols=570 Identities=20% Similarity=0.372 Sum_probs=493.7
Q ss_pred eeecccCccCCCHHHHHhcCCceeeEEccCCCCCCCCCCCcccC-CCCCCCcCcCcCeeEecCceEeC--ceeEEcCCCC
Q 007267 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGS-DGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGS 78 (610)
Q Consensus 2 ~vR~t~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~~~~~~~-~~~~~~RC~~C~ayiNp~~~~~~--~~w~C~~C~~ 78 (610)
+||+|||+||.+++++++++||||++||||++..+.+.|+++.+ ....|+||++|+|||||||+|+. ++|+||||+.
T Consensus 45 ~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~ 124 (766)
T 3eh2_A 45 YIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSC 124 (766)
T ss_dssp TEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCCBCTTTCCBCCTTCEEEGGGTEEECTTTCC
T ss_pred eEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCCCCCccCCCCCEeCCceEEecCCCEEEeccccc
Confidence 68999999999999999999999999999999876655544443 34679999999999999999984 7999999999
Q ss_pred CCCCChhhhcccC------CCcCccccccccEEEEecCCCCccccCCCCcEEEEEEeCCCCh---hHHHHHHHHHHHHHH
Q 007267 79 LNGLSSQAIARYT------HPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALE 149 (610)
Q Consensus 79 ~N~~p~~~~~~~~------~~~~~pEL~~~tvey~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~l~~~l~~~l~ 149 (610)
.|++|++|++..+ +..+||||++|+|||.+|.+|+.+..++.||+|+||||+|..+ +++++++++|+++|+
T Consensus 125 ~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~ 204 (766)
T 3eh2_A 125 INDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLD 204 (766)
T ss_dssp EEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGG
T ss_pred cCCCCHHHhccccccccccccccCcccccCceeeecCHhhccCCCCCCCCEEEEEEECchhhccchHHHHHHHHHHHHHH
Confidence 9999999876432 2567899999999999999998644577899999999999976 799999999999999
Q ss_pred hCCCC-------cEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccccc-cCcc-CcCccchHhHHHHHHHHHH
Q 007267 150 AVPSG-------ALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSALE 220 (610)
Q Consensus 150 ~lp~~-------~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~-~~p~-~~~l~~~~e~~~~i~~~L~ 220 (610)
.||++ ++|||||||+.||||+++.+..++++++ +.|++| ++|+ ++||+|++||++.|+++|+
T Consensus 205 ~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~v---------v~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~ 275 (766)
T 3eh2_A 205 FLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMV---------VSDVADMFVPLLDGFLVNVNESRAVITSLLD 275 (766)
T ss_dssp GCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEE---------ECCTTTCCCCCCTTSSBCTTTTHHHHHHHHH
T ss_pred hCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEE---------ecChhhhccccccceeEeHHHHHHHHHHHHH
Confidence 99975 8999999999999999998766666643 467777 4686 6899999999999999999
Q ss_pred hcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCC-CCCcccccccCcCcccCC
Q 007267 221 TLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPD-HGAGQLDTRRYGEQYASK 299 (610)
Q Consensus 221 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkIi~F~~g~pt-~GpG~l~~~~~~~~~~~~ 299 (610)
+|++++++.+ .+.+|+|+||++|+.+|+..+ .||||++|++|+|+ .|||+|+.+++++.++
T Consensus 276 ~L~~~~~~~~------------~~~t~~g~al~aa~~~l~~~~----~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~-- 337 (766)
T 3eh2_A 276 QIPEMFADTR------------ETETVFVPVIQAGMEALKAAE----CAGKLFLFHTSLPIAEAPGKLKNRDDRKLIN-- 337 (766)
T ss_dssp HHHHHHTTCC------------CCCCCSHHHHHHHHHHHHHTT----CCEEEEEEECSCCCSSSTTCCCCCCCGGGTT--
T ss_pred hhhhhccCCC------------CCcchHHHHHHHHHHHhccCC----CCcEEEEEecCCCCcCCCcccccccccccCC--
Confidence 9998754332 257899999999999998643 25999999999776 8999999999988875
Q ss_pred CcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccCccEEEEeCCCCC----CchhHHHHHHhc
Q 007267 300 GEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDD----STLPQDIYRMLS 375 (610)
Q Consensus 300 ~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~----~~l~~dl~~~l~ 375 (610)
+|+|+++++++.+||++||++|+++||+||+|+++.+|+|++||+.|++.|||.+++|++|+. ++|.+||.|.++
T Consensus 338 -sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~f~~dl~~~l~ 416 (766)
T 3eh2_A 338 -TDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQ 416 (766)
T ss_dssp -STTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeCCCcchhHHHHHHHHHHHHhh
Confidence 467889999999999999999999999999999999999999999999999999999999975 459999999999
Q ss_pred cCcceeeEEEEEccCCeeeeeeeeccccCCCCCcceeeeecCCCccEEEEEEEecCCCcCCCCCCccEEEEEEEeeecCC
Q 007267 376 RPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVP 455 (610)
Q Consensus 376 ~~~~~~a~lrvr~S~gl~v~~~~G~~~~~~~~~~~~~i~~~~~~~t~a~~fe~~~~~~l~~~~~~~~~iQ~a~~Yt~~~g 455 (610)
+++||+|+||||||+||+|+++|||++.++ .+.|.++++++++|++|+|++++ +++ ....+|||+|++||+.+|
T Consensus 417 ~~~gf~a~mrVR~S~glkv~~~~G~~~~~~--t~~~~l~~i~~d~s~~v~f~~~~--~l~--~~~~~~~Q~allYt~~~G 490 (766)
T 3eh2_A 417 KVVGFDAVMRVRTSTGIRAVDFFGAFYMSN--TTDVELAGLDGDKTVTVEFKHDD--RLN--EESGALLQCALLYTSCAG 490 (766)
T ss_dssp SCEEEEEEEEEEECTTEEEEEEEESCBCSS--SSCEEEEEEETTCCEEEEEEESS--CCC--TTTCEEEEEEEEEECTTS
T ss_pred hcceeeEEEEEEecCCeEEEEeECCeecCC--CCceeeccCCCCceEEEEEEecC--CCC--CCCcEEEEEEEEeEcCCC
Confidence 999999999999999999999999999764 46799999999999999998876 554 257899999999999999
Q ss_pred ccccc--cc------c-------------------------cc-----------------------------c-c-----
Q 007267 456 PEELS--SE------G-------------------------LG-----------------------------S-V----- 467 (610)
Q Consensus 456 ~~~~~--n~------~-------------------------~~-----------------------------s-~----- 467 (610)
+||+| |. + .. + +
T Consensus 491 ~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~~~R~~l~~~~~~~l~~Yrk~~~~~~s~~ql~lp 570 (766)
T 3eh2_A 491 QRRLRIHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASPSSAGQLILP 570 (766)
T ss_dssp CEEEEEEEEEEEEESSHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCC
T ss_pred CEEEEEEEEeeEecCCHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccceecC
Confidence 99887 21 0 00 0 0
Q ss_pred ------------------------------------cccCChhhhHhhhcccccccCCCCCCCcccccccch-hhhcCCC
Q 007267 468 ------------------------------------SSALEPSSLQRAVYPLLTSYSTPDKQAFPRHSLSRA-ALITSGS 510 (610)
Q Consensus 468 ------------------------------------~~~~~~~~~~~~~yP~l~~~~spde~~~~~~~l~r~-~~~~s~~ 510 (610)
++++++..+..++||+|+++|++++.....+..++. ..+++.+
T Consensus 571 ~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~~~~~~~~~P~~v~ls~~~l~~~ 650 (766)
T 3eh2_A 571 ECMKLLPVYLNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPAVRASEERLSNG 650 (766)
T ss_dssp GGGTTHHHHHHHHHTSTTTSCCTTCCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECSSCCCSCC--CCCBCSSGGGCCTT
T ss_pred HHHHHHHHHHHHHHccHhhcCCCCCCccHHHHHHHHHHCCCHHHHHHHHhheEEEeecCCcccccCCCCcCCcHHHcCCC
Confidence 456677778889999999999876654333333444 3367889
Q ss_pred cEEEEecCcEEEEEecCCCCCCCC---------------------CCCChhHHHHHHHHHHHhcCCCCceEEEEeCCCCc
Q 007267 511 PIFLLDAFTTIIVFYSSTADPTLP---------------------FPPPQDCLLRTTINKMKQERSITPKLIFIRGGQDD 569 (610)
Q Consensus 511 ~iyllD~g~~~~i~~G~~v~~~~~---------------------~~~~~~~~~~~~i~~i~~~r~~~p~l~~~~~~~~~ 569 (610)
||||||+|++++||+|.+++++++ ++++.++++|++|+.++++|..+++++++|||++.
T Consensus 651 giyLlD~g~~i~lw~G~~v~~~~l~dlFgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~~~~~~~l~ivr~~~~~ 730 (766)
T 3eh2_A 651 DIYLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKM 730 (766)
T ss_dssp CEEEEECSSEEEEEECTTCCHHHHHHHHSCSSGGGSCTTCCSCCCCSSHHHHHHHHHHHHHHTTSSSCCEEEEEESSSST
T ss_pred cEEEEEcCcEEEEEecCCCCHHHHHHHcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCh
Confidence 999999999999999999988533 46889999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHHHHHhhC
Q 007267 570 ATIFENYLIEEQDVDGSGLTSVMGFVSFLEEISQSVVEYMK 610 (610)
Q Consensus 570 ~~~f~~~LveD~~~~~~~~~~~~sy~dfl~~lh~~i~~~l~ 610 (610)
|.+|.++||||++.+|+ +||+|||+||||+|+++|.
T Consensus 731 ~~~f~~~LvED~~~~~~-----~SY~dfL~~lh~~i~~~l~ 766 (766)
T 3eh2_A 731 EMLFKHFLVEDKSLSGG-----ASYVDFLCHMHKEIRQLLS 766 (766)
T ss_dssp HHHHHTTCTTSCCTTTC-----CCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCcccCCCCCC-----CCHHHHHHHHHHHHHHhcC
Confidence 99999999999997665 8999999999999999873
No 2
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=2.1e-114 Score=987.40 Aligned_cols=569 Identities=20% Similarity=0.362 Sum_probs=492.1
Q ss_pred eeecccCccCCCHHHHHhcCCceeeEEccCCCCCCCCCCC-cccCCCCCCCcCcCcCeeEecCceEeC--ceeEEcCCCC
Q 007267 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAP-VYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGS 78 (610)
Q Consensus 2 ~vR~t~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~~~-~~~~~~~~~~RC~~C~ayiNp~~~~~~--~~w~C~~C~~ 78 (610)
+||+|||+||.+++++++++||||++||||++..+.+.|+ .++.....|+||++|+|||||||+|+. ++|+||||+.
T Consensus 49 ~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~ 128 (770)
T 3efo_B 49 FIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNC 128 (770)
T ss_dssp TEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCC
T ss_pred eEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCCCCCccCCCCCCcCCceEEecCCCEEEeccccc
Confidence 6999999999999999999999999999999987766654 444445679999999999999999984 7999999999
Q ss_pred CCCCChhhhcccCC------CcCccccccccEEEEecCCCCccccCCCCcEEEEEEeCCCCh---hHHHHHHHHHHHHHH
Q 007267 79 LNGLSSQAIARYTH------PQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALE 149 (610)
Q Consensus 79 ~N~~p~~~~~~~~~------~~~~pEL~~~tvey~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~l~~~l~~~l~ 149 (610)
.|++|++|++..+. ..+||||++|+|||++|.+|+....++.||+|+||||+|..+ +++++++++|+++|+
T Consensus 129 ~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~ 208 (770)
T 3efo_B 129 VNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLE 208 (770)
T ss_dssp EEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGG
T ss_pred cCCCchHhhccccccccccccccCcccccCceeeecCHHHhccCCCCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHH
Confidence 99999998754432 457899999999999999998544578899999999999975 799999999999999
Q ss_pred hCCCC-------cEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccccc-cCcc-CcCccchHhHHHHHHHHHH
Q 007267 150 AVPSG-------ALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSALE 220 (610)
Q Consensus 150 ~lp~~-------~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~-~~p~-~~~l~~~~e~~~~i~~~L~ 220 (610)
.||++ ++|||||||+.||||++++...++++++ +.|++| ++|+ ++||+|++||++.|+++|+
T Consensus 209 ~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~v---------v~d~~d~f~P~~~~~Lv~l~e~~~~i~~lL~ 279 (770)
T 3efo_B 209 KIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMV---------VTDVGEVFVPLLDGFLVNYQESQSVIHNLLD 279 (770)
T ss_dssp GCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEE---------ECCTTSCCCCCSSSSSBCTTTTHHHHHHHHH
T ss_pred hCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEE---------ecccccccCCCccceeeeHHHHHHHHHHHHH
Confidence 99974 8999999999999999998777666644 356776 4786 6899999999999999999
Q ss_pred hcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCC-CCCcccccccCcCcccCC
Q 007267 221 TLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPD-HGAGQLDTRRYGEQYASK 299 (610)
Q Consensus 221 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkIi~F~~g~pt-~GpG~l~~~~~~~~~~~~ 299 (610)
+|+.++++.+ .+.+|+|+||++|+.+|+..+ .||||++|++|+|+ .|||+|+.+++++.++
T Consensus 280 ~L~~~~~~~~------------~~~t~~g~al~aa~~~l~~~~----~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~-- 341 (770)
T 3efo_B 280 QIPDMFADSN------------ENETVFAPVIQAGMEALKAAD----CPGKLFIFHSSLPTAEAPGKLKNRDDKKLVN-- 341 (770)
T ss_dssp HHHHHHHTCC------------CCCCCCHHHHHHHHHHHHHHT----CCEEEEEEECSCCCSSSTTCCCCCCCCCCSS--
T ss_pred hhHhhccCCC------------CCcchHHHHHHHHHHHhccCC----CCcEEEEEecCCCCcCCCccccccccccccC--
Confidence 9988753332 257899999999999998642 25999999999766 8999999999988875
Q ss_pred CcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccCccEEEEeCCCC----CCchhHHHHHHhc
Q 007267 300 GEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTD----DSTLPQDIYRMLS 375 (610)
Q Consensus 300 ~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~----~~~l~~dl~~~l~ 375 (610)
+++|+++++++.+||++||++|+++||+||+|+++.+|+|++||+.|++.|||.+++|++|+ .++|.+||.|.++
T Consensus 342 -t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~~f~~dl~~~l~ 420 (770)
T 3efo_B 342 -TDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIE 420 (770)
T ss_dssp -CSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceEEEecCCcchhHHHHHHHHHHHhhh
Confidence 46788999999999999999999999999999999999999999999999999999999997 4678999999999
Q ss_pred cCcceeeEEEEEccCCeeeeeeeeccccCCCCCcceeeeecCCCccEEEEEEEecCCCcCCCCCCccEEEEEEEeeecCC
Q 007267 376 RPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVP 455 (610)
Q Consensus 376 ~~~~~~a~lrvr~S~gl~v~~~~G~~~~~~~~~~~~~i~~~~~~~t~a~~fe~~~~~~l~~~~~~~~~iQ~a~~Yt~~~g 455 (610)
+++||+|+||||||+||+|+++|||++.++ .+.|.++++++++|++|+|++++ +++ ....+|||+|++||+.+|
T Consensus 421 ~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~--t~~~~l~~~~~d~s~~v~f~~~~--~l~--~~~~~~~Q~allYt~~~G 494 (770)
T 3efo_B 421 KKIGFDAIMRVRTSTGFRATDFFGGILMNN--TTDVEMAAIDCDKAVTVEFKHDD--KLS--EDSGALIQCAVLYTTISG 494 (770)
T ss_dssp SCEEEEEEEEEEECTTEEEEEEESSCBCSS--SSCEEEEEEESSCCEEEEEEESS--CCB--TTTBEEEEEEEEEECTTC
T ss_pred hceeeeEEEEEEecCCeEEEEeECCeeCCC--CCceEecccCcCceEEEEEEecC--CCC--CCCcEEEEEEEEEEcCCC
Confidence 999999999999999999999999998754 45799999999999999999876 554 256899999999999999
Q ss_pred ccccc--cc------c-------------------------c-----------------------------cc-c-----
Q 007267 456 PEELS--SE------G-------------------------L-----------------------------GS-V----- 467 (610)
Q Consensus 456 ~~~~~--n~------~-------------------------~-----------------------------~s-~----- 467 (610)
+||+| |. + . .+ +
T Consensus 495 ~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~l~~~r~~L~~~~~~~l~~Yrk~~~~~~s~~ql~Lp 574 (770)
T 3efo_B 495 QRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRKNCASPSAASQLILP 574 (770)
T ss_dssp CEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTEEEEC
T ss_pred CEEEEEEEechhhcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCccceecC
Confidence 99886 21 0 0 00 0
Q ss_pred ------------------------------------cccCChhhhHhhhcccccccCCCCCCCcccccccch-hhhcCCC
Q 007267 468 ------------------------------------SSALEPSSLQRAVYPLLTSYSTPDKQAFPRHSLSRA-ALITSGS 510 (610)
Q Consensus 468 ------------------------------------~~~~~~~~~~~~~yP~l~~~~spde~~~~~~~l~r~-~~~~s~~ 510 (610)
++++++..+..++||+|+++|++++.....+..+|. ..+++.+
T Consensus 575 ~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~l~~~~~~~P~~v~ls~~~l~~~ 654 (770)
T 3efo_B 575 DSMKVLPVYMNCLLKNCVLLSRPEISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLDVKSTMLPAAVRCSESRLSEE 654 (770)
T ss_dssp GGGTTHHHHHHHHHHSGGGSCSSSSCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECTTCCSSSCSCCCCCCSSGGGCCTT
T ss_pred HHHHHHHHHHHHHhCcHhhcCCCCCCccHHHHHHHHHHCCCHHHHHHhhccceEEEeccccccccCCCCcCCcHHHcCCC
Confidence 456677788889999999999876654333444444 3467889
Q ss_pred cEEEEecCcEEEEEecCCCCCCCC---------------------CCCChhHHHHHHHHHHHhcCCCCceEEEEeCCCCc
Q 007267 511 PIFLLDAFTTIIVFYSSTADPTLP---------------------FPPPQDCLLRTTINKMKQERSITPKLIFIRGGQDD 569 (610)
Q Consensus 511 ~iyllD~g~~~~i~~G~~v~~~~~---------------------~~~~~~~~~~~~i~~i~~~r~~~p~l~~~~~~~~~ 569 (610)
||||||+|++++||+|.+++++++ ++++.++++|++|+.|+++|..+++++++|||++.
T Consensus 655 giyLLD~g~~i~lw~G~~v~~~l~~~lfgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~r~~~~~l~ivr~~~~~ 734 (770)
T 3efo_B 655 GIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQP 734 (770)
T ss_dssp CEEEEECSSEEEEEECTTCCHHHHHHHHSSSSGGGCCTTCCSCCCCCSSHHHHHHHHHHHHHTTCSSCCEEEEEESTTST
T ss_pred cEEEEECCcEEEEEecCCCCHHHHHHhcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCCccEEEEeCCCCh
Confidence 999999999999999999988553 35899999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHHHHHhh
Q 007267 570 ATIFENYLIEEQDVDGSGLTSVMGFVSFLEEISQSVVEYM 609 (610)
Q Consensus 570 ~~~f~~~LveD~~~~~~~~~~~~sy~dfl~~lh~~i~~~l 609 (610)
|.+|.++||||++.+++ +||+|||+||||+|+++|
T Consensus 735 e~~f~~~LvED~~~~~~-----~SY~dfL~~lh~~i~~~l 769 (770)
T 3efo_B 735 EMVFRQFLVEDKGLYGG-----SSYVDFLCCVHKEICQLL 769 (770)
T ss_dssp THHHHTTCTTSCC---C-----CCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCcccCCCCCC-----CCHHHHHHHHHHHHHHhc
Confidence 99999999999985454 899999999999999987
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=6e-114 Score=980.04 Aligned_cols=557 Identities=22% Similarity=0.380 Sum_probs=481.8
Q ss_pred eeecccCccCCCHHHHHhcCCceeeEEccCCCCCCCCCCCcccCCCCCCCcCcCcCeeEecCceEe-CceeEEcCCCCCC
Q 007267 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELE-QWAWTCSLCGSLN 80 (610)
Q Consensus 2 ~vR~t~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~~~~~~~~~~~~~RC~~C~ayiNp~~~~~-~~~w~C~~C~~~N 80 (610)
+||+|||+||.+++++++++||||++||||++..+ + |.+. ...|+||++|+|||||||+|. +++|+||||+..|
T Consensus 42 ~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~~--~-P~v~--~~~p~RC~rCrayiNPf~~f~~~~~w~Cn~C~~~N 116 (751)
T 3eh1_A 42 SFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQ--L-PVIT--SNTIVRCRSCRTYINPFVSFIDQRRWKCNLCYRVN 116 (751)
T ss_dssp TEEESBSSEESSHHHHHHHCCCCEEEECTTCCCSC--C-CEEC--CSCCCBCTTTCCBCCTTCEESSSSEEECTTTCCEE
T ss_pred eEEeecccCCCCHHHHHhCCCCeEEEEecCCcCCC--C-CccC--CCCCCcccCccCEeCCceEEecCCEEEcccccCCC
Confidence 69999999999999999999999999999998752 3 3332 356899999999999999985 5899999999999
Q ss_pred CCChhhhc-----ccCCCcCccccccccEEEEecCCCCccccCCCCcEEEEEEeCCCCh---hHHHHHHHHHHHHHHhCC
Q 007267 81 GLSSQAIA-----RYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEAVP 152 (610)
Q Consensus 81 ~~p~~~~~-----~~~~~~~~pEL~~~tvey~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~l~~~l~~~l~~lp 152 (610)
++|++|+. ++.+..+||||+++||||++|++|+.+ ++.||+|+||||+|..+ |.+++++++|+++|+.||
T Consensus 117 ~~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r--~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp 194 (751)
T 3eh1_A 117 DVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLR--PPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLP 194 (751)
T ss_dssp ECCGGGC---------CGGGSHHHHCSEEEEEECGGGCSS--SCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHhcccccccccCcccCchhccceEEEEcChhhhcC--CCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcC
Confidence 99999741 123357789999999999999999854 57899999999999975 669999999999999999
Q ss_pred CCc--EEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccccc-cCcc-CcCccchHhHHHHHHHHHHhcCCCCCc
Q 007267 153 SGA--LFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSALETLRPTTSW 228 (610)
Q Consensus 153 ~~~--~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~-~~p~-~~~l~~~~e~~~~i~~~L~~L~~~~~~ 228 (610)
+++ +|||||||+.||||+++.+..+++++ ++.|++| ++|. ++||+|++||++.|+++|++|+.++++
T Consensus 195 ~~~~~~VG~ITfd~~vh~y~l~~~~~~~qml---------vv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~ 265 (751)
T 3eh1_A 195 GDSRTRIGFMTFDSTIHFYNLQEGLSQPQML---------IVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTN 265 (751)
T ss_dssp CCTTCEEEEEEESSSEEEEECCTTCSSCEEE---------EESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTT
T ss_pred CCcCcEEEEEEeCCEEEEEECCCCcccceee---------ccccccccCCCChhhhcccHHHHHHHHHHHHHhhhHhhcC
Confidence 865 99999999999999999877666653 4567777 4776 689999999999999999999887544
Q ss_pred ccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCCCcccccccCcCcccCCCcchhhccC
Q 007267 229 ERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALL 308 (610)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkIi~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~ 308 (610)
.+ .+.+|+|+||++|..+|+..| |||++|++|+||.|||+|+.+++.+. + ++++|++++
T Consensus 266 ~~------------~~~~~~G~AL~aA~~ll~~~G------GrI~~F~sg~pt~GpG~l~~r~~~~~-~--~~~ke~~~~ 324 (751)
T 3eh1_A 266 TR------------ETHSALGPALQAAFKLMSPTG------GRVSVFQTQLPSLGAGLLQSREDPNQ-R--SSTKVVQHL 324 (751)
T ss_dssp CS------------CCCCCHHHHHHHHHHHHTTTC------EEEEEEECSCCCSSTTCCCCCCCSCG-G--GGSSSCTTC
T ss_pred CC------------CCccchHHHHHHHHHHhhcCC------CEEEEEecCCCCCCCCcccccccccc-C--CCchhhhhh
Confidence 31 378999999999999998754 99999999999999999999987653 2 345678899
Q ss_pred CcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccCccEEEEeCCCCCC-------chhHHHHHHhccCccee
Q 007267 309 PEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDS-------TLPQDIYRMLSRPYAFN 381 (610)
Q Consensus 309 ~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~~-------~l~~dl~~~l~~~~~~~ 381 (610)
+++.+||++||++|+++||+||+|+++.+|+|++||+.+++.|||.+++|++|+.. +|.+||+|.+++++||+
T Consensus 325 ~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l~~~~gf~ 404 (751)
T 3eh1_A 325 GPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFE 404 (751)
T ss_dssp SCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHHHSCCEEE
T ss_pred cchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchhHHHHHHHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999853 79999999999999999
Q ss_pred eEEEEEccCCeeeeeeeeccccCCCCCcceeeeecCCCccEEEEEEEecCCCcCCCCCCccEEEEEEEeeecCCccccc-
Q 007267 382 CIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELS- 460 (610)
Q Consensus 382 a~lrvr~S~gl~v~~~~G~~~~~~~~~~~~~i~~~~~~~t~a~~fe~~~~~~l~~~~~~~~~iQ~a~~Yt~~~g~~~~~- 460 (610)
|+||||||+||+|++++||++.++ .+.|.++++++++|++|+|++++ +++ ....+|||+|++||+.+|+||+|
T Consensus 405 a~mrVR~S~glkv~~~~G~~~~~~--t~~~~l~~i~~d~s~~v~~~~~~--~l~--~~~~~~~Q~allYT~~~G~RRiRV 478 (751)
T 3eh1_A 405 AVMRIRCTKGLSMHTFHGNFFVRS--TDLLSLANINPDAGFAVQLSIEE--SLT--DTSLVCFQTALLYTSSKGERRIRV 478 (751)
T ss_dssp EEEEEEECTTEEEEEEESSSEECS--SSEEEEEEECTTCCEEEEEEESS--CCC--SCSEEEEEEEEEEECTTSCEEEEE
T ss_pred eEEEEEecCCeEEEEeeCCeEeCC--CCceEeccCCCCCEEEEEEEEcC--CCC--CCCceEEEEEEeeecCCCCEEEEE
Confidence 999999999999999999999865 56899999999999999999886 454 25689999999999999999887
Q ss_pred -ccc---------------------------------------------------------cc---c-c-----------
Q 007267 461 -SEG---------------------------------------------------------LG---S-V----------- 467 (610)
Q Consensus 461 -n~~---------------------------------------------------------~~---s-~----------- 467 (610)
|.. .+ + .
T Consensus 479 ~T~~l~vt~~~~~v~~~~DqeA~~~llar~av~~~~~~~l~d~r~~l~~~li~il~~Yr~~~~~~~~~~l~lpe~lkllP 558 (751)
T 3eh1_A 479 HTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGSTVSNLQHSALMAPSSLKLFP 558 (751)
T ss_dssp EEEEEEEECSHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCC-----CCEEEGGGTTHH
T ss_pred EEecccccCCHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCcHHHHHHH
Confidence 210 00 0 0
Q ss_pred -----------------------------cccCChhhhHhhhcccccccCCCCCCC--------cccccccchh-hhcCC
Q 007267 468 -----------------------------SSALEPSSLQRAVYPLLTSYSTPDKQA--------FPRHSLSRAA-LITSG 509 (610)
Q Consensus 468 -----------------------------~~~~~~~~~~~~~yP~l~~~~spde~~--------~~~~~l~r~~-~~~s~ 509 (610)
++++++..+..++||+|+++|+++++. ...+.++|.+ .++..
T Consensus 559 ~~~~~L~Ks~~~~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~ 638 (751)
T 3eh1_A 559 LYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTR 638 (751)
T ss_dssp HHHHHHHTSTTTCCSSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCT
T ss_pred HHHHHHHccHhhcCCCCCChhHHHHHHHHHhCCCHHHHHhhccceEEEeecCccccCcccCCCccCCCCcccCCHHHccc
Confidence 456778888889999999999864322 2345555554 36788
Q ss_pred CcEEEEecCcEEEEEecCCCCCCCC---------------------CCCChhHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 007267 510 SPIFLLDAFTTIIVFYSSTADPTLP---------------------FPPPQDCLLRTTINKMKQERSITPKLIFIRGGQD 568 (610)
Q Consensus 510 ~~iyllD~g~~~~i~~G~~v~~~~~---------------------~~~~~~~~~~~~i~~i~~~r~~~p~l~~~~~~~~ 568 (610)
+||||||+|++++||+|.+++++++ ++++.++++|++|++++++|..+|+++++||+++
T Consensus 639 ~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv~~~~~~~~~~~~lp~~~t~~s~~vr~ii~~lr~~r~~~~~l~vvr~~~~ 718 (751)
T 3eh1_A 639 EGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSRPLSPILHIVKDESP 718 (751)
T ss_dssp TSEEEEECSSEEEEEECTTCCHHHHHHTTCCSSGGGCCSSBCCCCCCSSHHHHHHHHHHHHHHHTSSSCCEEEEEESSSS
T ss_pred CCEEEEECCCEEEEEECCCCCHHHHHHHcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHhcCCCcceEEEEeCCCc
Confidence 9999999999999999999998554 2478999999999999999999999999999999
Q ss_pred cHHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHHHHH
Q 007267 569 DATIFENYLIEEQDVDGSGLTSVMGFVSFLEEISQSVVE 607 (610)
Q Consensus 569 ~~~~f~~~LveD~~~~~~~~~~~~sy~dfl~~lh~~i~~ 607 (610)
.|.+|.++||||++.+ + +||+|||++|||+|++
T Consensus 719 ~~~~f~~~LvED~~~~-~-----~SY~~fL~~~h~~i~~ 751 (751)
T 3eh1_A 719 AKAEFFQHLIEDRTEA-A-----FSYYEFLLHVQQQICK 751 (751)
T ss_dssp SHHHHHTTCTTSCBTT-B-----CCHHHHHHHHHHHHHC
T ss_pred hHHHHHHhCcccCCCC-C-----CCHHHHHHHHHHHhcC
Confidence 9999999999999954 3 8999999999999974
No 4
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=4.2e-109 Score=947.08 Aligned_cols=580 Identities=24% Similarity=0.366 Sum_probs=476.3
Q ss_pred eeecccCccCCCHHHHHhcCCceeeEEccCCCCCCCCCCCcccCCCCCCCcCcC--cCeeEecCceEeC--ceeEEcCCC
Q 007267 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCEN--CYAYFNTYCELEQ--WAWTCSLCG 77 (610)
Q Consensus 2 ~vR~t~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~~~~~~~~~~~~~RC~~--C~ayiNp~~~~~~--~~w~C~~C~ 77 (610)
|||+|||+||.+++++++++|||||+|+||++.. ++| .+. .+|+||++ |+|||||||+|+. ++|+||||+
T Consensus 11 ~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~--~~p-~v~---~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~ 84 (768)
T 1m2o_A 11 GVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYD--ELN-VAP---YNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICN 84 (768)
T ss_dssp SEEESBSEEESSHHHHHHTCSCSEEEECTTCCCT--TCC-EEC---SCCCBCCSTTTCCBCCTTSCEETTTTEECCTTTC
T ss_pred ceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCC--CCC-cCC---CCCCccCCCCCCeEECCceEEeCCCCEEEcccCC
Confidence 7999999999999999999999999999999753 333 332 47999999 9999999999984 699999999
Q ss_pred CCCCCChhhhcccCCCcCccccccccEEEEecCCCCccccCCCCcEEEEEEeCCCChhHHHHHHHHHHHHHHhCCCCcEE
Q 007267 78 SLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALF 157 (610)
Q Consensus 78 ~~N~~p~~~~~~~~~~~~~pEL~~~tvey~~p~~y~~~~~~~~~p~~vFvID~s~~~~~l~~l~~~l~~~l~~lp~~~~V 157 (610)
+.|++|++|+ ..+..+.+|||+++||||++|+. ++.||+|+||||+|.++++++.++++|+++|+.||++++|
T Consensus 85 ~~N~~P~~y~-~~~~~~~~pEL~~~tvEy~~p~~------~~~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~Lp~~~~V 157 (768)
T 1m2o_A 85 SRNHLPPQYT-NLSQENMPLELQSTTIEYITNKP------VTVPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALI 157 (768)
T ss_dssp CCCBCCGGGC-C---CCCCGGGTCSEEEEECSCC------CCSCCEEEEEEECCSCHHHHHHHHHHHHHHHHTSCTTCEE
T ss_pred CCCCCChHHc-cCCcccCChhhccCCEEEECCCC------CCCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 9999999965 33334557899999999999973 4678999999999999999999999999999999999999
Q ss_pred EEEeecceeEEEEecCCCcceeeeeeCCCCCccc----------cc-----cc-----cc-cCc----cCcCccchHhHH
Q 007267 158 GLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTL----------SL-----EL-----ED-VMP----LSQFLAPVETFK 212 (610)
Q Consensus 158 glITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~----------~~-----dl-----~~-~~p----~~~~l~~~~e~~ 212 (610)
||||||+.||||+++...+.+.+||.+ .+++. +. ++ ++ ++| .++||+|++||+
T Consensus 158 GlITf~~~V~~y~l~~~~~~~~~V~~g--~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~ 235 (768)
T 1m2o_A 158 GLITYGNVVQLHDLSSETIDRCNVFRG--DREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVE 235 (768)
T ss_dssp EEEEESSEEEECCCSSSSSEEEEEEET--TSCCCHHHHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHH
T ss_pred EEEEECCEEEEEECCCCCCcceeeecC--CccccHHHHHHHHhhccccccCCccccccccccccccCCccceeeeHHHHH
Confidence 999999999999999888778888873 33221 11 11 33 133 468999999999
Q ss_pred HHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCCCcccccccC
Q 007267 213 ENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRY 292 (610)
Q Consensus 213 ~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkIi~F~~g~pt~GpG~l~~~~~ 292 (610)
+.|+++|++|+++ .|....+ +++.||+|+||++|..+|+...++ .||||++|++|+||.|||+|+.+++
T Consensus 236 ~~i~~lL~~L~~~-~~~~~~~--------~~~~~~~G~Al~~A~~ll~~~~~~--~GGrI~~F~sg~pt~GpG~l~~r~~ 304 (768)
T 1m2o_A 236 FKLNQLLENLSPD-QWSVPAG--------HRPLRATGSALNIASLLLQGCYKN--IPARIILFASGPGTVAPGLIVNSEL 304 (768)
T ss_dssp HHHHHHHHTCCCS-CSCCCTT--------BCCCCCHHHHHHHHHHHHHHHCTT--SCCEEEEEESSCCCSSSSCCSCSBT
T ss_pred HHHHHHHHhcccc-ccccCCC--------CCCcccHHHHHHHHHHHHhhccCC--CCcEEEEEeCCCCCCCCcccccccc
Confidence 9999999999985 4543322 147899999999999999964322 2699999999999999999999999
Q ss_pred cCcccCC-Ccchh-hccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccCccEEEEeCCCCCCchhHHH
Q 007267 293 GEQYASK-GEDAD-RALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDI 370 (610)
Q Consensus 293 ~~~~~~~-~~~~e-~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~~~l~~dl 370 (610)
++.+|++ ++++| +++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++|.+++
T Consensus 305 ~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l 384 (768)
T 1m2o_A 305 KDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSY 384 (768)
T ss_dssp TSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHH
T ss_pred ccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHHHHH
Confidence 9988874 34554 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc------CcceeeEEEEEccCCeeeeeeeeccccCCC--------------CCcceeeeecCCCccEEEEEEEec
Q 007267 371 YRMLSR------PYAFNCIMRLRTSSEFKPGHSYGHFFPDPQ--------------YENVQHIICCDSYATYAYDFDFAN 430 (610)
Q Consensus 371 ~~~l~~------~~~~~a~lrvr~S~gl~v~~~~G~~~~~~~--------------~~~~~~i~~~~~~~t~a~~fe~~~ 430 (610)
+|.|++ ++||+|+||||||+||+|++++||+++.++ ..+.|+++++|+++|++|+|++++
T Consensus 385 ~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~~~ 464 (768)
T 1m2o_A 385 LRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIAN 464 (768)
T ss_dssp HHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEECC
T ss_pred HHHHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEEEecc
Confidence 999998 689999999999999999999999996543 134799999999999999999997
Q ss_pred CCCc-------CCC--CCCccEEEEEEEeeecCCccccc--cc-----cc---------------------------cc-
Q 007267 431 AAGF-------ARH--TSEQPMLQIAFQYTVVVPPEELS--SE-----GL---------------------------GS- 466 (610)
Q Consensus 431 ~~~l-------~~~--~~~~~~iQ~a~~Yt~~~g~~~~~--n~-----~~---------------------------~s- 466 (610)
.... +.+ ....+|||||++||+.+|+||+| |. .. .+
T Consensus 465 ~~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~~~~~~v~~~~Dqea~~~llar~av~~~~~~~ 544 (768)
T 1m2o_A 465 TAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIAASFDQEAAAVLMARIAVHKAETDD 544 (768)
T ss_dssp C-----------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEECTTCHHHHHTBCHHHHHHHHHHHHHHHTTSSC
T ss_pred ccccccccccccccccCCCcEEEEEEEEEEcCCCCEEEEEEeecccccCccHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 4321 000 25789999999999999999887 21 00 00
Q ss_pred --------------------ccccCChhhhHh----hhccccc-----------ccCCCCCCCcccccccchhh------
Q 007267 467 --------------------VSSALEPSSLQR----AVYPLLT-----------SYSTPDKQAFPRHSLSRAAL------ 505 (610)
Q Consensus 467 --------------------~~~~~~~~~~~~----~~yP~l~-----------~~~spde~~~~~~~l~r~~~------ 505 (610)
.|++.++.++++ .+||+|+ ++.+|||++|+++.++++++
T Consensus 545 ~~d~r~~l~~~li~l~~~~~~Yrk~~~~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~~~l~~ 624 (768)
T 1m2o_A 545 GADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSLIM 624 (768)
T ss_dssp HHHHHHHHHHHHHHHHHHHSBCCTTCGGGCBCCTTTTHHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHhcccccCCCCCChhHHHHHHHHHHcCCHHHHHHh
Confidence 066666666555 5667776 36677777777666655532
Q ss_pred ----------------------hcCCCcEEEEecCcEEEEEecCCCCC--CCCCC-CChhHHHHHHH-------HHHHhc
Q 007267 506 ----------------------ITSGSPIFLLDAFTTIIVFYSSTADP--TLPFP-PPQDCLLRTTI-------NKMKQE 553 (610)
Q Consensus 506 ----------------------~~s~~~iyllD~g~~~~i~~G~~v~~--~~~~~-~~~~~~~~~~i-------~~i~~~ 553 (610)
.++.+||||||+|++++||+|.++++ +.+|+ .|+++.+++++ ++|.++
T Consensus 625 iyP~L~~~~~~~~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~ll~~p~~~a~~i~~~ 704 (768)
T 1m2o_A 625 IQPTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPKLEAAELLVD 704 (768)
T ss_dssp HSCEEEEECSSSCCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTGGGSTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCeEEEecCCCCCcceeCcHHHcCCCCEEEEECCCEEEEEECCcchHHHhcccCCCchhhhHHHHhhhhHHHHHHHHhc
Confidence 23447999999999999999999986 55576 78899888665 688899
Q ss_pred CCCCceEEEEeCCCCcHHHHHhhccCCCCCC-----CCC-C-cccccHHHHHHHHHHHHHH
Q 007267 554 RSITPKLIFIRGGQDDATIFENYLIEEQDVD-----GSG-L-TSVMGFVSFLEEISQSVVE 607 (610)
Q Consensus 554 r~~~p~l~~~~~~~~~~~~f~~~LveD~~~~-----~~~-~-~~~~sy~dfl~~lh~~i~~ 607 (610)
|+|+|++++++||++|+|||+++|+||.+.+ |+. + ++..||.+|++||||.|++
T Consensus 705 R~p~Pr~i~~~~~~sqarfl~s~L~p~~~~~~~~~~~~~~i~tdd~S~~~f~~~L~k~~v~ 765 (768)
T 1m2o_A 705 RFPLPRFIDTEAGGSQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSLQNFMTHLQQVAVS 765 (768)
T ss_dssp CSSCCEEEEEETTCGGGHHHHTTSBCC-----------CCCCCCSCCHHHHHHHHHHHHCC
T ss_pred CCCCceEEEECCCCcHHHHHHHHcCCCccccccccCCccccccCCcCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998732 111 1 4568999999999999864
No 5
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=1.2e-107 Score=940.83 Aligned_cols=560 Identities=18% Similarity=0.338 Sum_probs=465.7
Q ss_pred CeeecccCccCCCHHHHHhcCCceeeEEccCCCCCCCCCC-CcccCCCCCCCcCcCcCeeEecCceEeC--ceeEEcCCC
Q 007267 1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAA-PVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCG 77 (610)
Q Consensus 1 ~~vR~t~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~~-~~~~~~~~~~~RC~~C~ayiNp~~~~~~--~~w~C~~C~ 77 (610)
.+||+|||+||.+++++++++|||||+|+||++..+.+.+ |.+. ...|+||++|+|||||||+|+. ++|+||||+
T Consensus 180 ~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~--~~~pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~ 257 (926)
T 1m2v_B 180 DYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNE--DGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCR 257 (926)
T ss_dssp TTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEEC--SCCCCBCSSSCCBCCTTCEEETTTTEEECTTTC
T ss_pred CceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccC--CCCCCccCCccCEecCceEEeCCCCEEEccCCC
Confidence 3799999999999999999999999999999987543333 3333 2348999999999999999994 699999999
Q ss_pred CCCCCChhhhcc----cCCCcCccccccccEEEEecCCCCccccCCCCcEEEEEEeCCCCh---hHHHHHHHHHHHHHHh
Q 007267 78 SLNGLSSQAIAR----YTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEA 150 (610)
Q Consensus 78 ~~N~~p~~~~~~----~~~~~~~pEL~~~tvey~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~l~~~l~~~l~~ 150 (610)
+.|++|++|+.. ..++.+||||+++||||++|++|+.+ .+.||+||||||+|.++ +.+++++++|+++|+.
T Consensus 258 ~~N~~P~~Y~~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r--~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~ 335 (926)
T 1m2v_B 258 LANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR--QPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDS 335 (926)
T ss_dssp CEEECCGGGTTTSTTCGGGGGGSHHHHCSEEEEECCGGGCSS--CCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTT
T ss_pred CCCCCchhhccccccCccccccCccccCceEEEEcChhhccC--CCCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHh
Confidence 999999997510 01246689999999999999999854 56899999999999976 5689999999999999
Q ss_pred CCC---CcEEEEEeecceeEEEEecCCCc-------ceeeeeeCCCCCccccccccc-cCcc-CcCccchHhHHHHHHHH
Q 007267 151 VPS---GALFGLATFSHKIGLYDVQGAIP-------VVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSA 218 (610)
Q Consensus 151 lp~---~~~VglITf~~~V~~~~l~~~~~-------~~~~v~~~~~~~~~~~~dl~~-~~p~-~~~l~~~~e~~~~i~~~ 218 (610)
||+ +++|||||||+.||||+++.+.. +.++ .++.|++| ++|+ ++||+|++||++.|+++
T Consensus 336 LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qm---------lvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~l 406 (926)
T 1m2v_B 336 IPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINM---------MDIADLEEPFLPRPNSMVVSLKACRQNIETL 406 (926)
T ss_dssp SCCTTSCCEECEEEESSSEEEEECCCC---------CCEE---------EEECCCSSCCCSCSSSSSEETTTTHHHHHHH
T ss_pred CCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhh---------ccccccccccCCCcccccccHHHHHHHHHHH
Confidence 987 79999999999999999987543 2333 34566777 4665 68999999999999999
Q ss_pred HHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCCCcccccccCcCcccC
Q 007267 219 LETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYAS 298 (610)
Q Consensus 219 L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkIi~F~~g~pt~GpG~l~~~~~~~~~~~ 298 (610)
|++|++++... +++.||+|+||++|..+|+..| |||++|++|+||.|||+|+.++++++
T Consensus 407 Le~L~~~~~~~------------~~~~~~~G~AL~aA~~lL~~~G------GrI~~F~sg~Pt~GpG~l~~re~~~~--- 465 (926)
T 1m2v_B 407 LTKIPQIFQSN------------LITNFALGPALKSAYHLIGGVG------GKIIVVSGTLPNLGIGKLQRRNESGV--- 465 (926)
T ss_dssp HHHHHHHTSSC------------CCCCCCHHHHHHHHHHHHTTTC------EEEEEEESSCCCSSTTCCCCCCC------
T ss_pred HHhhhhhhcCC------------CCCCccHHHHHHHHHHHHHhhC------CEEEEEecCCCCCCCCcccccccccc---
Confidence 99998864322 1378999999999999999754 99999999999999999999988753
Q ss_pred CCcchhhc-cCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccCccEEEEeCCCCCC------chhHHHH
Q 007267 299 KGEDADRA-LLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDS------TLPQDIY 371 (610)
Q Consensus 299 ~~~~~e~~-~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~~------~l~~dl~ 371 (610)
+++++|+. +++++.+||++||.+|+++||+||+|+++.+|+|++||+.|++.|||.+++|++|+.. +|..|+.
T Consensus 466 ~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~d~~kf~~dl~ 545 (926)
T 1m2v_B 466 VNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFA 545 (926)
T ss_dssp -CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHHHHHHHHHHH
T ss_pred cCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCcchhhhHHHHHHHHHH
Confidence 46777776 9999999999999999999999999999999999999999999999999999999865 5788999
Q ss_pred HHhccCcceeeEEEEEccCCeeeeeeeeccccCCCCCcceeeeecCCCccEEEEEEEecCCCcCCCCCCccEEEEEEEee
Q 007267 372 RMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYT 451 (610)
Q Consensus 372 ~~l~~~~~~~a~lrvr~S~gl~v~~~~G~~~~~~~~~~~~~i~~~~~~~t~a~~fe~~~~~~l~~~~~~~~~iQ~a~~Yt 451 (610)
+.+++++||+|+||||||+||+|++++||++.++ ++.|+++++++++|++|+|++++ +++ .+.+|||||++||
T Consensus 546 ~~Lt~~~gf~a~mrVR~S~glkv~~~~G~~~~~~--s~~~~l~~l~~d~s~av~f~~~~--~l~---~~~~~~Q~allYT 618 (926)
T 1m2v_B 546 KHISMDFCMETVMRARGSTGLRMSRFYGHFFNRS--SDLCAFSTMPRDQSYLFEVNVDE--SIM---ADYCYVQVAVLLS 618 (926)
T ss_dssp HHHHSCCEEEEEEEEEECTTEEEEEEESSSBCSS--TTEEEEEEECSSCCEEEEEEECS--BCC---SSEEEEEEEEEEE
T ss_pred HHhhhhhceeEEEEEEeCCCcEEEEeecCccccC--cCceEeeccCCCCEEEEEEEecc--CCC---CCcEEEEEEEEEE
Confidence 9999999999999999999999999999999754 67899999999999999999987 453 4689999999999
Q ss_pred ecCCccccc--cc------c---------------------------------------------------cc------c
Q 007267 452 VVVPPEELS--SE------G---------------------------------------------------LG------S 466 (610)
Q Consensus 452 ~~~g~~~~~--n~------~---------------------------------------------------~~------s 466 (610)
+.+|+||+| |. + .. +
T Consensus 619 ~~~G~RRiRV~T~~l~vt~~l~~v~~s~Dqea~~~llar~av~~~~~~~~~d~r~~L~~~li~il~~Yrk~~~~~~~~~~ 698 (926)
T 1m2v_B 619 LNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGG 698 (926)
T ss_dssp ETTTEEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHTCCCTTSSS
T ss_pred cCCCCEEEEEEeecccccCCHHHHHHhcCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Confidence 999999887 21 0 00 0
Q ss_pred -c---------------------------------------cccCChhhhHhhhcccccccCCC-CCCC-----------
Q 007267 467 -V---------------------------------------SSALEPSSLQRAVYPLLTSYSTP-DKQA----------- 494 (610)
Q Consensus 467 -~---------------------------------------~~~~~~~~~~~~~yP~l~~~~sp-de~~----------- 494 (610)
. ++++++.++.+++||+|+++|+. +|..
T Consensus 699 ~sl~Lp~~lkllP~~~~~L~KS~~l~~~~~p~Dera~~~~~l~~~~~~~l~~~iyP~L~s~h~~~~~~g~~~~~~~~~~~ 778 (926)
T 1m2v_B 699 APLRLCANLRMFPLLMHSLTKHMAFRSGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEAT 778 (926)
T ss_dssp SCCEEEGGGTTHHHHHHHHHTSTTTCSSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEETTTCCSSCSCC---------
T ss_pred cccccCHHHHHHHHHHHHHhcchhhCCCCCCccHHHHHHHHHHcCCHHHHHHhccCeEEEeccCcccccccccccccccc
Confidence 0 34566777778999999998864 3322
Q ss_pred --cccccccchh-hhcCCCcEEEEecCcEEEEEecCCCCCCCC---------------------C-CCChhHHHHHHHHH
Q 007267 495 --FPRHSLSRAA-LITSGSPIFLLDAFTTIIVFYSSTADPTLP---------------------F-PPPQDCLLRTTINK 549 (610)
Q Consensus 495 --~~~~~l~r~~-~~~s~~~iyllD~g~~~~i~~G~~v~~~~~---------------------~-~~~~~~~~~~~i~~ 549 (610)
+..+..++.+ ..++.+|+||||+|..+++|+|.+++++++ + +++.++++|++|+.
T Consensus 779 ~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~p~ll~dlFg~~~~~~i~~~~~~lp~l~~~~~s~~lr~iI~~ 858 (926)
T 1m2v_B 779 GTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQ 858 (926)
T ss_dssp CCCCCCCCBCSCSTTCCTTCEEEEECSSEEEEEECTTCCSGGGC-------------------------CHHHHHHHHHH
T ss_pred cccccCCcccCcHHHhccCCEEEEECCCEEEEEecCCCCHHHHHHHhCCCchhhcCcccccCccCCCChHHHHHHHHHHH
Confidence 1223333433 256789999999999999999999998664 3 67899999999999
Q ss_pred HHhcCC--CCceEEEEeCCCC--------------cHHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHHHHH
Q 007267 550 MKQERS--ITPKLIFIRGGQD--------------DATIFENYLIEEQDVDGSGLTSVMGFVSFLEEISQSVVE 607 (610)
Q Consensus 550 i~~~r~--~~p~l~~~~~~~~--------------~~~~f~~~LveD~~~~~~~~~~~~sy~dfl~~lh~~i~~ 607 (610)
||+.|. .+|+++++||++. .+.||.++||||++.+ + +||+|||++|||+|++
T Consensus 859 lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~~~~-~-----~SY~dfL~~lh~~i~~ 926 (926)
T 1m2v_B 859 LRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILN-N-----ESYREFLQIMKARISK 926 (926)
T ss_dssp TTCCSSCCCCCEEEEEC------------CCHHHHHHHHHHHTCTTSSCTT-C-----CCHHHHHHHHHHHHCC
T ss_pred HHHhCCCCCCceEEEEecCCCCCccccccccchhhHHHHHHHhCeecCCCC-C-----CCHHHHHHHHHHHhhC
Confidence 999986 6789999987643 4568999999999954 3 8999999999999963
No 6
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=1.1e-107 Score=937.96 Aligned_cols=561 Identities=18% Similarity=0.338 Sum_probs=455.7
Q ss_pred CeeecccCccCCCHHHHHhcCCceeeEEccCCCCCCCCCCCcccCCCCCCCcCcCcCeeEecCceEeC--ceeEEcCCCC
Q 007267 1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGS 78 (610)
Q Consensus 1 ~~vR~t~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~~~~~~~~~~~~~RC~~C~ayiNp~~~~~~--~~w~C~~C~~ 78 (610)
.|||+|||+||.+++++++++|||||+|+||++..+.+.++++.. ...|+||++|+|||||||+|+. ++|+||||++
T Consensus 64 ~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~-~~~pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~ 142 (810)
T 1pcx_A 64 DYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNE-DGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRL 142 (810)
T ss_dssp TTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEEC-SCCCCBCTTTCCBCCTTCEEETTTTEEECTTTCC
T ss_pred CceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccC-CCCCCccCCccCEecCceEEeCCCCEEEccCCCC
Confidence 379999999999999999999999999999998754333322322 2348999999999999999994 6999999999
Q ss_pred CCCCChhhhcc----cCCCcCccccccccEEEEecCCCCccccCCCCcEEEEEEeCCCCh---hHHHHHHHHHHHHHHhC
Q 007267 79 LNGLSSQAIAR----YTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEAV 151 (610)
Q Consensus 79 ~N~~p~~~~~~----~~~~~~~pEL~~~tvey~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~l~~~l~~~l~~l 151 (610)
.|++|++|+.. ..++.+||||+++||||++|++|+.+ ++.||+|+||||+|.++ +.+++++++|+++|+.|
T Consensus 143 ~N~~P~~y~~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~--~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~L 220 (810)
T 1pcx_A 143 ANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR--QPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSI 220 (810)
T ss_dssp EEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGGGCSS--CCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTS
T ss_pred cCCCchhhccccccCccccccCccccCceEEEEcCchhccC--CCCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHhC
Confidence 99999997610 11256789999999999999999754 57899999999999976 56889999999999999
Q ss_pred CC---CcEEEEEeecceeEEEEecCCCc-------ceeeeeeCCCCCccccccccc-cCcc-CcCccchHhHHHHHHHHH
Q 007267 152 PS---GALFGLATFSHKIGLYDVQGAIP-------VVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSAL 219 (610)
Q Consensus 152 p~---~~~VglITf~~~V~~~~l~~~~~-------~~~~v~~~~~~~~~~~~dl~~-~~p~-~~~l~~~~e~~~~i~~~L 219 (610)
|+ +++|||||||+.||||+++.... +.++ .++.|++| ++|+ ++||+|++||++.|+++|
T Consensus 221 p~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~m---------lvv~dl~d~f~P~~~~~Lv~l~e~~~~i~~lL 291 (810)
T 1pcx_A 221 PNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINM---------MDIADLEEPFLPRPNSMVVSLKACRQNIETLL 291 (810)
T ss_dssp CCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEE---------ECCCCTTCC-----TTTSEETTTTHHHHHHHH
T ss_pred CCCCCCcEEEEEEECCEEEEEecCccccCccccccchhh---------ccccccccccCCCcccccccHHHHHHHHHHHH
Confidence 97 79999999999999999986543 2333 34566776 4665 689999999999999999
Q ss_pred HhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCCCcccccccCcCcccCC
Q 007267 220 ETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASK 299 (610)
Q Consensus 220 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkIi~F~~g~pt~GpG~l~~~~~~~~~~~~ 299 (610)
++|+++++.. +++.||+|+||++|..+|+..| |||++|++|+||.|||+|+.++++++ +
T Consensus 292 ~~L~~~~~~~------------~~~~~a~G~AL~~A~~lL~~~G------GrI~~F~sg~pt~GpG~l~~r~~~~~---~ 350 (810)
T 1pcx_A 292 TKIPQIFQSN------------LITNFALGPALKSAYHLIGGVG------GKIIVVSGTLPNLGIGKLQRRNESGV---V 350 (810)
T ss_dssp HHHHHHTTTC------------CCCCCCHHHHHHHHHHHHTTTC------EEEEEEESSCCCSSTTCCCC----------
T ss_pred HhhhhhccCC------------CCCCccHHHHHHHHHHHHHhcC------CEEEEEecCCCCCCCCcccccccccc---c
Confidence 9998864322 1378999999999999999754 99999999999999999999988753 4
Q ss_pred Ccchhhc-cCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccCccEEEEeCCCCCC------chhHHHHH
Q 007267 300 GEDADRA-LLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDS------TLPQDIYR 372 (610)
Q Consensus 300 ~~~~e~~-~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~~------~l~~dl~~ 372 (610)
++++|+. +++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.. +|..|+.+
T Consensus 351 ~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~~f~~dl~~ 430 (810)
T 1pcx_A 351 NTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAK 430 (810)
T ss_dssp -------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHHHHHHHH
T ss_pred CcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhhHHHHHHHHHHHH
Confidence 6777776 9999999999999999999999999999999999999999999999999999999865 67889999
Q ss_pred HhccCcceeeEEEEEccCCeeeeeeeeccccCCCCCcceeeeecCCCccEEEEEEEecCCCcCCCCCCccEEEEEEEeee
Q 007267 373 MLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTV 452 (610)
Q Consensus 373 ~l~~~~~~~a~lrvr~S~gl~v~~~~G~~~~~~~~~~~~~i~~~~~~~t~a~~fe~~~~~~l~~~~~~~~~iQ~a~~Yt~ 452 (610)
.+++++||+|+||||||+||+|++++||+++++ ++.|.++++++++|++|+|++++ +++ .+.+|||||++||+
T Consensus 431 ~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~--~~~~~l~~~~~d~s~~v~f~~~~--~l~---~~~~~~Q~allYt~ 503 (810)
T 1pcx_A 431 HISMDFCMETVMRARGSTGLRMSRFYGHFFNRS--SDLCAFSTMPRDQSYLFEVNVDE--SIM---ADYCYVQVAVLLSL 503 (810)
T ss_dssp HHHCCCCEEEEEEEEECTTEEEEEEESSSBCSS--SSEEEESSCCSSCCEEEEEEECS--CCC---SSEEEEEEEEEEEC
T ss_pred HhhhhcceeEEEEEEcCCCeEEEEeecCccccC--cCceEeecCCCCCEEEEEEEecc--CCC---CCcEEEEEEEEEEc
Confidence 999999999999999999999999999999854 67899999999999999999987 443 46899999999999
Q ss_pred cCCccccc--cc------c---------------------------------------------------cc------c-
Q 007267 453 VVPPEELS--SE------G---------------------------------------------------LG------S- 466 (610)
Q Consensus 453 ~~g~~~~~--n~------~---------------------------------------------------~~------s- 466 (610)
.+|+||+| |. + .. +
T Consensus 504 ~~G~RRiRV~T~~~~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~d~r~~l~~~li~il~~Yrk~~~~~~~~~~~ 583 (810)
T 1pcx_A 504 NNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGA 583 (810)
T ss_dssp TTSCEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHCC----CCSS
T ss_pred CCCCEEEEEEecCccccCCHHHHHHhcCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhcccccCCCCc
Confidence 99999886 21 0 00 0
Q ss_pred c---------------------------------------cccCChhhhHhhhcccccccCCC-CCCCc-----------
Q 007267 467 V---------------------------------------SSALEPSSLQRAVYPLLTSYSTP-DKQAF----------- 495 (610)
Q Consensus 467 ~---------------------------------------~~~~~~~~~~~~~yP~l~~~~sp-de~~~----------- 495 (610)
. ++++++.++.+++||+|+++|+. ++..+
T Consensus 584 ~l~lp~~lkllP~~~~~L~ks~~l~~~~~p~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~g~~~~~~~~~~~~ 663 (810)
T 1pcx_A 584 PLRLCANLRMFPLLMHSLTKHMAFRSGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATG 663 (810)
T ss_dssp CCEEEGGGTTHHHHHHHHHTSTTTCSSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSSTTSBC--------C
T ss_pred ccccCHHHHHHHHHHHHHhcchhcCCCCCCccHHHHHHHHHHcCCHHHHHHhccCEEEEeccCccccccccccccccccc
Confidence 0 34556677777999999998864 33221
Q ss_pred --ccccccchh-hhcCCCcEEEEecCcEEEEEecCCCCCCCC---------------------C-CCChhHHHHHHHHHH
Q 007267 496 --PRHSLSRAA-LITSGSPIFLLDAFTTIIVFYSSTADPTLP---------------------F-PPPQDCLLRTTINKM 550 (610)
Q Consensus 496 --~~~~l~r~~-~~~s~~~iyllD~g~~~~i~~G~~v~~~~~---------------------~-~~~~~~~~~~~i~~i 550 (610)
..+..++.+ ..++.+|+||||+|..+++|+|.+++++++ + +++.++++|++|+.|
T Consensus 664 ~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lwvg~~~~~~l~~~lFg~~~~~~~~~~~~~lp~~~~~~~~~~l~~iI~~l 743 (810)
T 1pcx_A 664 TIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQL 743 (810)
T ss_dssp CBCCCCBCCSSTTSCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSCGGGSCCEECCCCCCSSCHHHHHHHHHHHHH
T ss_pred ccccCCcccCCHHHhCcCCEEEEECCCEEEEEeCCCCCHHHHHHHhCCCchhhcCcccccCCcCCCChHHHHHHHHHHHH
Confidence 123334443 256779999999999999999999887543 4 678999999999999
Q ss_pred HhcCC--CCceEEEEeCCCC--------------cHHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHHHHH
Q 007267 551 KQERS--ITPKLIFIRGGQD--------------DATIFENYLIEEQDVDGSGLTSVMGFVSFLEEISQSVVE 607 (610)
Q Consensus 551 ~~~r~--~~p~l~~~~~~~~--------------~~~~f~~~LveD~~~~~~~~~~~~sy~dfl~~lh~~i~~ 607 (610)
|++|. .+|+++++||++. .+.||.++||||++.+ + +||+|||++||++|++
T Consensus 744 r~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~~~~-~-----~SY~~fL~~lh~~i~~ 810 (810)
T 1pcx_A 744 RNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILN-N-----ESYREFLQIMKARISK 810 (810)
T ss_dssp HCCSSCCCCCEEEEEECCCTTCCCCHHHHHHHHHHHHHHHTTCTTSCBTT-B-----CCHHHHHHHHHHHTCC
T ss_pred HHhCCCCCCceEEEEecCCCCCccccccccchhhHHHHHHHhCeecCCCC-C-----CCHHHHHHHHHHHhhC
Confidence 99986 6789999998743 3568999999999954 3 8999999999999863
No 7
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=1.6e-106 Score=924.87 Aligned_cols=578 Identities=21% Similarity=0.310 Sum_probs=473.8
Q ss_pred eeecccCccCCCHHHHHhcCCceeeEEccCCCCCCCCCCCcccCCCCCCCcCcC--cCeeEecCceEeC--ceeEEcCCC
Q 007267 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCEN--CYAYFNTYCELEQ--WAWTCSLCG 77 (610)
Q Consensus 2 ~vR~t~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~~~~~~~~~~~~~RC~~--C~ayiNp~~~~~~--~~w~C~~C~ 77 (610)
|||+|||+||.+++++++++|||||+|+||++.. ++| .+. .+|+||++ |+|||||||+|+. ++|+||||+
T Consensus 20 ~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~--~~p-~v~---~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~ 93 (769)
T 2nut_A 20 GVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP--DLP-PIQ---YEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCY 93 (769)
T ss_dssp SEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCS--CCC-CBC---SCCCBCSSTTCCCBCCTTSEEETTTTEEECSSSC
T ss_pred cccceeccCCCChHHHhcccCCeEEEEeeCCCCC--CCC-cCC---CCCCcCCCCCCCeEECCceEEeCCCCEEEccCCC
Confidence 7999999999999999999999999999999763 333 332 47999999 9999999999994 699999999
Q ss_pred CCCCCChhhhcccCCCcCcccc--ccccEEEEecCCCCccccCCCCcEEEEEEeCCCChhHHHHHHHHHHHHHHhCCCCc
Q 007267 78 SLNGLSSQAIARYTHPQSCAEM--ISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGA 155 (610)
Q Consensus 78 ~~N~~p~~~~~~~~~~~~~pEL--~~~tvey~~p~~y~~~~~~~~~p~~vFvID~s~~~~~l~~l~~~l~~~l~~lp~~~ 155 (610)
+.|++|++|+ ..+..+.+||| .++||||++|++| +.||+|+||||+|.++.++++++++|+++|+.||+++
T Consensus 94 ~~N~~P~~Y~-~~~~~~~~pEL~p~~~tvEy~~~~~~------p~pp~~vFvIDvS~~a~~l~~l~~si~~~L~~Lp~~~ 166 (769)
T 2nut_A 94 QRNQFPPSYA-GISELNQPAELLPQFSSIEYVVLRGP------QMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTA 166 (769)
T ss_dssp CEEECCGGGT-TCBTTBCCGGGSGGGSSEEEEECSSC------CCCCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CCCCCChHHc-cCCcccCChhhcCCCCcEEEEccCCC------CCCCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999975 34334567899 8999999999876 5789999999999999999999999999999999999
Q ss_pred EEEEEeecceeEEEEecCCCcceeeeeeCCCCCcc---------cccc----c-----ccc--CccCcCccchHhHHHHH
Q 007267 156 LFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDT---------LSLE----L-----EDV--MPLSQFLAPVETFKENI 215 (610)
Q Consensus 156 ~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~---------~~~d----l-----~~~--~p~~~~l~~~~e~~~~i 215 (610)
+|||||||+.||||+++...+.+++||.+. +++ ++.| + ++. +|+++||+|++||++.|
T Consensus 167 ~VGlITf~~~v~~y~l~~~~~~~~~vf~G~--k~~~~~q~~~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i 244 (769)
T 2nut_A 167 LVGLITFGRMVQVHELGCEGISKSYVFRGT--KDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNL 244 (769)
T ss_dssp EEEEEEESSEEEEEESSCCSSCEEEEEETT--SCCCSHHHHHHHC-------------------CCCSSSEEHHHHHHHH
T ss_pred eEEEEEeCCEEEEEeCCCCCCccceeecCC--ccccHHHHHHHhCCCCcccccccccccccCCCcccceeeeHHHHHHHH
Confidence 999999999999999999888888999843 222 1221 2 443 56789999999999999
Q ss_pred HHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCCCcccccccCcCc
Q 007267 216 TSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQ 295 (610)
Q Consensus 216 ~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkIi~F~~g~pt~GpG~l~~~~~~~~ 295 (610)
+++|++|+++ .|....+ +++.||+|+||++|..+|+...++ .||||++|++|+||.|||+|+.+++++.
T Consensus 245 ~~lLe~L~~~-~~~~~~~--------~~~~~a~G~Al~~A~~lL~~~~~~--~GGrI~~F~sg~pt~GpG~l~~r~~~~~ 313 (769)
T 2nut_A 245 TDLLGELQRD-PWPVPQG--------KRPLRSSGVALSIAVGLLECTFPN--TGARIMMFIGGPATQGPGMVVGDELKTP 313 (769)
T ss_dssp HHHHHHCCCC-SSCCCTT--------BCCCCCHHHHHHHHHHHHHHHSCS--SCCEEEEEESSCCCSSSSCCSCSBTTSC
T ss_pred HHHHHhcccc-cccccCC--------CCCccchHHHHHHHHHHHhhcccC--CCcEEEEEeCCCCCCCCCCCcCcccccc
Confidence 9999999985 3443322 137899999999999999964322 2699999999999999999999999998
Q ss_pred ccCC-Ccchh-hccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccCccEEEEeCCCCCCchhHHHHHH
Q 007267 296 YASK-GEDAD-RALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRM 373 (610)
Q Consensus 296 ~~~~-~~~~e-~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~~~l~~dl~~~ 373 (610)
+|++ ++++| +++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++|.++|+|.
T Consensus 314 ~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~ 393 (769)
T 2nut_A 314 IRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRV 393 (769)
T ss_dssp CCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHT
T ss_pred cccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhHHHHHHHH
Confidence 8874 45666 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcc------CcceeeEEEEEccCCeeeeeeeeccccCCCC-------------CcceeeeecCCCccEEEEEEEecCCC-
Q 007267 374 LSR------PYAFNCIMRLRTSSEFKPGHSYGHFFPDPQY-------------ENVQHIICCDSYATYAYDFDFANAAG- 433 (610)
Q Consensus 374 l~~------~~~~~a~lrvr~S~gl~v~~~~G~~~~~~~~-------------~~~~~i~~~~~~~t~a~~fe~~~~~~- 433 (610)
|++ ++||+|+||||||+||+|++++||+++.+++ .+.|+++++|+++|++|+|++++...
T Consensus 394 ~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~~~~~ 473 (769)
T 2nut_A 394 FTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNA 473 (769)
T ss_dssp TCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC-----
T ss_pred HhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEEEEEecCcccc
Confidence 998 6899999999999999999999999865332 23699999999999999999997532
Q ss_pred -cCCCCCCccEEEEEEEeeecCCccccc--cc------ccc-------c-------------------------------
Q 007267 434 -FARHTSEQPMLQIAFQYTVVVPPEELS--SE------GLG-------S------------------------------- 466 (610)
Q Consensus 434 -l~~~~~~~~~iQ~a~~Yt~~~g~~~~~--n~------~~~-------s------------------------------- 466 (610)
++ ....+|||||++||+.+|+||+| |. ... +
T Consensus 474 ~l~--~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~~~~~~~v~~~~Dqea~~~llar~a~~~~~~~~~~d~~~~ld 551 (769)
T 2nut_A 474 PIP--QGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLD 551 (769)
T ss_dssp -------CCEEEEEEEEEEETTSCEEEEEEEEEECBCCGGGHHHHHHHTBCHHHHHHHHHHHHHHHHTTC---CHHHHHH
T ss_pred ccC--CCCeEEEEEEEEEECCCCCEEEEEEeecccccCCcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 32 35789999999999999999887 21 000 0
Q ss_pred -----------ccccCChhhhHh----hhccccc-----------ccCCCCCCCcccccccchhh---------------
Q 007267 467 -----------VSSALEPSSLQR----AVYPLLT-----------SYSTPDKQAFPRHSLSRAAL--------------- 505 (610)
Q Consensus 467 -----------~~~~~~~~~~~~----~~yP~l~-----------~~~spde~~~~~~~l~r~~~--------------- 505 (610)
.|++.++.++++ .+||+|+ ++.+|||++|+++.++++++
T Consensus 552 ~~li~l~~~~~~Yrk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~~~~~~iyP~L~~~~ 631 (769)
T 2nut_A 552 RQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYS 631 (769)
T ss_dssp HHHHHHHHHHCBCCTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTCCHHHHHHHHSCEEEEEC
T ss_pred HHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHcCCHHHHHHhhcCEEEecc
Confidence 056666665554 4567666 25667777766666555532
Q ss_pred -------------hcCCCcEEEEecCcEEEEEecCCCCC--CCCCC-CChhHHHHHHH-------HHHHhcCCCCceEEE
Q 007267 506 -------------ITSGSPIFLLDAFTTIIVFYSSTADP--TLPFP-PPQDCLLRTTI-------NKMKQERSITPKLIF 562 (610)
Q Consensus 506 -------------~~s~~~iyllD~g~~~~i~~G~~v~~--~~~~~-~~~~~~~~~~i-------~~i~~~r~~~p~l~~ 562 (610)
.+..++|||||+|++++||+|.++++ +++|+ +|+++.+++++ ++|+++|+|+||+++
T Consensus 632 ~~~~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p~~~a~~i~~~R~p~Pr~i~ 711 (769)
T 2nut_A 632 FSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYID 711 (769)
T ss_dssp SSSSCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHHHHHHHHHHHSSSCCEEEE
T ss_pred CCCCCCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhHHHHHHHHHhcCCCCCeEEE
Confidence 33447999999999999999999986 55687 79999998754 788999999999999
Q ss_pred EeCCCCcHHHHHhhccCCCCCC-----C---CC-C-cccccHHHHHHHHHHHHHH
Q 007267 563 IRGGQDDATIFENYLIEEQDVD-----G---SG-L-TSVMGFVSFLEEISQSVVE 607 (610)
Q Consensus 563 ~~~~~~~~~~f~~~LveD~~~~-----~---~~-~-~~~~sy~dfl~~lh~~i~~ 607 (610)
++||++|+|||+++|++..+.+ | +. + +++.|+..|+.||+|.+++
T Consensus 712 ~~~g~sqaRfl~sklnps~~~~~~~~~~~~~~~~~~tddvsl~~f~~~l~~~~v~ 766 (769)
T 2nut_A 712 TEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVS 766 (769)
T ss_dssp EETTCSTTHHHHHHCC----------------------CCSHHHHHHHHHHHHSS
T ss_pred EcCCCcHHHHHHHhcCCcccccCCCcCCCcCCccccccccCHHHHHHHHHHHhhc
Confidence 9999999999999999955421 2 11 1 4688999999999998753
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.41 E-value=3.6e-14 Score=106.68 Aligned_cols=41 Identities=22% Similarity=0.557 Sum_probs=37.1
Q ss_pred CCCCCcCcC--cCeeEecCceEeC--ceeEEcCCCCCCCCChhhh
Q 007267 47 GHMLPRCEN--CYAYFNTYCELEQ--WAWTCSLCGSLNGLSSQAI 87 (610)
Q Consensus 47 ~~~~~RC~~--C~ayiNp~~~~~~--~~w~C~~C~~~N~~p~~~~ 87 (610)
.++|+||++ |+|||||||+|+. ++|+|+||++.|++|++|+
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~ 50 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYA 50 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCS
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHh
Confidence 357899999 9999999999994 6999999999999999953
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.15 E-value=8.2e-09 Score=111.77 Aligned_cols=249 Identities=12% Similarity=0.052 Sum_probs=167.4
Q ss_pred EEEEEEeCCCChh----HHHHHHHHHHHHHHhCCCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCcccccccccc
Q 007267 123 VYVAAVDLSSSEE----FLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDV 198 (610)
Q Consensus 123 ~~vFvID~s~~~~----~l~~l~~~l~~~l~~lp~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~~ 198 (610)
.++||||+|.++. .++.+|+++...++.|+++.+||||+|++....+--
T Consensus 79 dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p--------------------------- 131 (464)
T 4fx5_A 79 VEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYP--------------------------- 131 (464)
T ss_dssp EEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEES---------------------------
T ss_pred eEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEec---------------------------
Confidence 4999999999864 589999999999999999999999999987764221
Q ss_pred CccCcCccch-HhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEec
Q 007267 199 MPLSQFLAPV-ETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLS 277 (610)
Q Consensus 199 ~p~~~~l~~~-~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkIi~F~~ 277 (610)
+...+.+. ...+..+.+.|+.|+.. +++.++.||..|..+|....+ ....|+++++
T Consensus 132 --~t~~l~~~~~~~~~~l~~~I~~L~~~------------------GgT~l~~aL~~A~~~l~~~~~---~~~~IILLTD 188 (464)
T 4fx5_A 132 --TGGQLLRADYQSRAAAKEAVGRLHAN------------------GGTAMGRWLAQAGRIFDTAPS---AIKHAILLTD 188 (464)
T ss_dssp --SSSSCEECSHHHHHHHHHHHHTCCCC------------------SCCCHHHHHHHHHHHHTTCTT---SEEEEEEEES
T ss_pred --CCcccccCCHHHHHHHHHHHHcCCCC------------------CCCcHHHHHHHHHHHHhcCCC---CCCEEEEEcC
Confidence 00001111 23556677778877643 456799999999999976432 2368999999
Q ss_pred CCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccCccEEEE
Q 007267 278 GPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFL 357 (610)
Q Consensus 278 g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~TGG~v~~ 357 (610)
|.++.+.- ... .-+.++...++.|..|.++. ..|...|..+|..|||..++
T Consensus 189 G~~~~~~~--------------------------~~l--~~~~~a~~~~i~i~tiGiG~-~~d~~~L~~IA~~tgG~~~~ 239 (464)
T 4fx5_A 189 GKDESETP--------------------------ADL--ARAIQSSIGNFTADCRGIGE-DWEPKELRKIADALLGTVGI 239 (464)
T ss_dssp SCCTTSCH--------------------------HHH--HHHHHHHTTTCEEEEEEESS-SSCHHHHHHHHHHTTCCEEE
T ss_pred CCCCCCCh--------------------------HHH--HHHHHHhcCCCeEEEEEeCC-ccCHHHHHHHHHhCCCEEEE
Confidence 98764210 001 11223446788888888754 47788999999999999888
Q ss_pred eCCCCCCchhHHH---HHHhccCcceeeEEEEEccCCeeeeeeee--c----cccCCC-----CCcceeeeecCCCccEE
Q 007267 358 YSSTDDSTLPQDI---YRMLSRPYAFNCIMRLRTSSEFKPGHSYG--H----FFPDPQ-----YENVQHIICCDSYATYA 423 (610)
Q Consensus 358 ~~~~~~~~l~~dl---~~~l~~~~~~~a~lrvr~S~gl~v~~~~G--~----~~~~~~-----~~~~~~i~~~~~~~t~a 423 (610)
.++.+ .+...+ ...+.....-++.+++++.+|..+..+.. + ...... ....+.++.+ .+.+-.
T Consensus 240 v~d~~--~L~~~f~~i~~~~~s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~~~~~~~~~~~~v~lG~l-~~e~r~ 316 (464)
T 4fx5_A 240 IRDPA--TLAEDFREMTAKSMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYPTGAW-GAESRE 316 (464)
T ss_dssp ESSGG--GHHHHHHHHHHHHHTCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGGCEECSSTTEEEEEEEEE-SSEEEE
T ss_pred cCCHH--HHHHHHHHHHHHhhchheeeeEEEEEeCCCcEEEEEEeecccccccCcccccCCCCcEEEEECCcC-CCCeEE
Confidence 77553 343333 33344567889999999999988876522 1 111110 0123566677 666666
Q ss_pred EEEEEecCCCcCCCCCCcc-EEEEEEEeeecCCc
Q 007267 424 YDFDFANAAGFARHTSEQP-MLQIAFQYTVVVPP 456 (610)
Q Consensus 424 ~~fe~~~~~~l~~~~~~~~-~iQ~a~~Yt~~~g~ 456 (610)
|.+++.-+. .+ .+... ..|+.+.|.+..|+
T Consensus 317 ~lv~l~v~~-~~--~g~~~~~~~v~~~y~~~~~~ 347 (464)
T 4fx5_A 317 YHICVEVEP-GN--IGQEKLAGRVQLVAKDAGGA 347 (464)
T ss_dssp EEEEEECCC-CC--TTCEEEEEEEEEEEEETTEE
T ss_pred EEEEEEcCC-CC--CCceeEEEEEEEEEcCCCcc
Confidence 777776532 11 23333 37999999987765
No 10
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=2.2e-08 Score=97.05 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=116.8
Q ss_pred CCcEEEEEEeCCCChh-------HHHHHHHHHHHHHHhCCCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCcccc
Q 007267 120 ARPVYVAAVDLSSSEE-------FLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLS 192 (610)
Q Consensus 120 ~~p~~vFvID~s~~~~-------~l~~l~~~l~~~l~~lp~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~ 192 (610)
.+.-++|+||+|.+.. .++.+|+++...++.++ +.+||||+|++..+..-
T Consensus 10 ~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~---------------------- 66 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQL---------------------- 66 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEE----------------------
T ss_pred CCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeC----------------------
Confidence 4557999999999863 78999999999999997 77999999998654311
Q ss_pred ccccccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceE
Q 007267 193 LELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARV 272 (610)
Q Consensus 193 ~dl~~~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkI 272 (610)
| +......+.++|+.|..... ...++.++.||..|...+..... ....|
T Consensus 67 -------~-------~~~~~~~~~~~l~~l~~~~~--------------~~g~T~l~~al~~a~~~l~~~~~---~~~~i 115 (218)
T 3ibs_A 67 -------P-------ITSDYISAKMFLESISPSLI--------------SKQGTAIGEAINLATRSFTPQEG---VGRAI 115 (218)
T ss_dssp -------E-------EESCHHHHHHHHHTCCGGGC--------------CSCSCCHHHHHHHHHTTSCSCSS---CCEEE
T ss_pred -------C-------CCCCHHHHHHHHHhcCcccC--------------CCCCCcHHHHHHHHHHHHhhCCC---CCcEE
Confidence 1 11123456677887764310 01467899999999999876421 23689
Q ss_pred EEEecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCC---------------
Q 007267 273 FAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNE--------------- 337 (610)
Q Consensus 273 i~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~--------------- 337 (610)
++++.|.++.| . ..+.+..+.+.||.|..+.++.+
T Consensus 116 vllTDG~~~~~--~----------------------------~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~ 165 (218)
T 3ibs_A 116 IVITDGENHEG--G----------------------------AVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRR 165 (218)
T ss_dssp EEEECCTTCCS--C----------------------------HHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCB
T ss_pred EEEcCCCCCCC--c----------------------------HHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeE
Confidence 99999988765 0 13577788889999999988764
Q ss_pred ---------CcChhcchhhhccCccEEEEeCC
Q 007267 338 ---------YTDLASLKFLSIESGGSLFLYSS 360 (610)
Q Consensus 338 ---------~~~l~~l~~l~~~TGG~v~~~~~ 360 (610)
..+...|..+|..|||..+...+
T Consensus 166 ~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~ 197 (218)
T 3ibs_A 166 DREGNVIVTRLNEGMCQEIAKDGKGIYVRVDN 197 (218)
T ss_dssp CTTSCBCEECCCHHHHHHHHHHTEEEEEEECS
T ss_pred cCCCCEeEecCCHHHHHHHHHhcCCEEEECCC
Confidence 56788899999999999877764
No 11
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.75 E-value=5.4e-08 Score=96.80 Aligned_cols=148 Identities=16% Similarity=0.109 Sum_probs=105.5
Q ss_pred EEEEEEeCCCCh-------hHHHHHHHHHHHHHHh---CCCCcEEEEEeecc-eeEEEEecCCCcceeeeeeCCCCCccc
Q 007267 123 VYVAAVDLSSSE-------EFLELTRSALQAALEA---VPSGALFGLATFSH-KIGLYDVQGAIPVVKNVFIPSDTEDTL 191 (610)
Q Consensus 123 ~~vFvID~s~~~-------~~l~~l~~~l~~~l~~---lp~~~~VglITf~~-~V~~~~l~~~~~~~~~v~~~~~~~~~~ 191 (610)
+.|||||+|.++ ..+++.|.++...++. ..+..+||||||.. ...+.
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl---------------------- 62 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL---------------------- 62 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE----------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec----------------------
Confidence 578999999986 4688888888777763 45678999999954 22221
Q ss_pred cccccccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccce
Q 007267 192 SLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALAR 271 (610)
Q Consensus 192 ~~dl~~~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~Gk 271 (610)
.|+...+..|...|+.|+.. ..+.++.||+.|..+|+.... +...-|
T Consensus 63 --------------~plT~D~~~il~aL~~l~~~------------------G~T~l~~gL~~A~~aLk~~~~-k~~~~r 109 (268)
T 4b4t_W 63 --------------STFTAEFGKILAGLHDTQIE------------------GKLHMATALQIAQLTLKHRQN-KVQHQR 109 (268)
T ss_dssp --------------EEEESCHHHHHHHHTTCCCC------------------SCCCHHHHHHHHHHHHHTCSC-TTSEEE
T ss_pred --------------cCCcchHHHHHHHhhhcCcC------------------CCCChHHHHHHHHHHHHhccc-CCCceE
Confidence 11122345677778877643 356799999999999976432 112358
Q ss_pred EEEEecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccC
Q 007267 272 VFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIES 351 (610)
Q Consensus 272 Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~T 351 (610)
|++|++|+-+.- .+-..++++++.++||.||++.++.+..+-..|..+++..
T Consensus 110 IIlf~ds~~~~~----------------------------~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~ 161 (268)
T 4b4t_W 110 IVAFVCSPISDS----------------------------RDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAV 161 (268)
T ss_dssp EEEEECSCCSSC----------------------------HHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHH
T ss_pred EEEEECCCCCCC----------------------------HHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHh
Confidence 999999864311 1223589999999999999999997766777788887766
Q ss_pred cc
Q 007267 352 GG 353 (610)
Q Consensus 352 GG 353 (610)
+|
T Consensus 162 Ng 163 (268)
T 4b4t_W 162 NN 163 (268)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 12
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.65 E-value=1.1e-06 Score=84.18 Aligned_cols=163 Identities=11% Similarity=0.057 Sum_probs=108.1
Q ss_pred CcEEEEEEeCCCCh--hHHHHHHHHHHHHHHhCC---CCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccc
Q 007267 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL 195 (610)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~l~~~l~~~l~~lp---~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl 195 (610)
+--.+|+||.|.+. ..++.+|+.+...++.++ ++.+||+|+|++..+..-
T Consensus 13 ~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~------------------------- 67 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYI------------------------- 67 (202)
T ss_dssp CEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEE-------------------------
T ss_pred cccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEE-------------------------
Confidence 44689999999985 468889999999999886 578999999998765311
Q ss_pred cccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHH-hhccccCCCcccceEEE
Q 007267 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFN-YLGSEYGNTFALARVFA 274 (610)
Q Consensus 196 ~~~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~-lL~~~~~~~~~~GkIi~ 274 (610)
|+..+ ..++.+.+.|+.|+... ...+.+|.||..|.. ++.. +......-.|++
T Consensus 68 ----~l~~~-----~~~~~~~~~i~~l~~~g----------------g~~T~~~~aL~~a~~~~~~~-~~r~~~~~~iil 121 (202)
T 1ijb_A 68 ----GLKDR-----KRPSELRRIASQVKYAG----------------SQVASTSEVLKYTLFQIFSK-IDRPEASRIALL 121 (202)
T ss_dssp ----CTTCC-----CCHHHHHHHHHTCCCCC----------------BSCCCHHHHHHHHHHHTSSS-CSCTTSEEEEEE
T ss_pred ----ecCCC-----CCHHHHHHHHHhCcCCC----------------CCcCcHHHHHHHHHHHHhcc-CCCCCCCeEEEE
Confidence 00000 12345667777776431 023679999999974 4442 111111246888
Q ss_pred EecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhcc-Ccc
Q 007267 275 FLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIE-SGG 353 (610)
Q Consensus 275 F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~-TGG 353 (610)
++.|.++.|.. + -..+.++.+.+.||.|-.+.++. ..+..+|..+|.. +||
T Consensus 122 lTDG~~~~~~~-----~----------------------~~~~~a~~l~~~gi~i~~igvG~-~~~~~~L~~iA~~~~~~ 173 (202)
T 1ijb_A 122 LMASQEPQRMS-----R----------------------NFVRYVQGLKKKKVIVIPVGIGP-HANLKQIRLIEKQAPEN 173 (202)
T ss_dssp EECCCCCGGGC-----T----------------------THHHHHHHHHHTTEEEEEEEEST-TSCHHHHHHHHHHCTTC
T ss_pred EccCCCCccch-----H----------------------HHHHHHHHHHHCCCEEEEEecCC-cCCHHHHHHHhCCCCcc
Confidence 89988753200 0 01346677778887666665543 4788899999985 688
Q ss_pred EEEEeCCCC
Q 007267 354 SLFLYSSTD 362 (610)
Q Consensus 354 ~v~~~~~~~ 362 (610)
.+|..++++
T Consensus 174 ~~~~~~~~~ 182 (202)
T 1ijb_A 174 KAFVLSSVD 182 (202)
T ss_dssp CCEEESSGG
T ss_pred cEEEeCCHH
Confidence 888888764
No 13
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.56 E-value=6.3e-07 Score=85.27 Aligned_cols=145 Identities=17% Similarity=0.171 Sum_probs=96.2
Q ss_pred EEEEEEeCCCCh-------hHHHHHHHHHHHHHHh---CCCCcEEEEEeecce-eEEEEecCCCcceeeeeeCCCCCccc
Q 007267 123 VYVAAVDLSSSE-------EFLELTRSALQAALEA---VPSGALFGLATFSHK-IGLYDVQGAIPVVKNVFIPSDTEDTL 191 (610)
Q Consensus 123 ~~vFvID~s~~~-------~~l~~l~~~l~~~l~~---lp~~~~VglITf~~~-V~~~~l~~~~~~~~~v~~~~~~~~~~ 191 (610)
..+|+||+|.++ ..++..|.++...+.. ..+..+||||+|... .++-
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~---------------------- 61 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVL---------------------- 61 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEE----------------------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEe----------------------
Confidence 578999999975 3678788777665432 245579999999763 2220
Q ss_pred cccccccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccce
Q 007267 192 SLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALAR 271 (610)
Q Consensus 192 ~~dl~~~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~Gk 271 (610)
.|+......+...|+.+.+. +++.+|.||..|..+|+.... +....|
T Consensus 62 --------------~plT~d~~~i~~~L~~l~~~------------------g~t~l~~aL~~A~~~l~~~~~-~~~~~r 108 (192)
T 2x5n_A 62 --------------STLTRDYGKFLSAMHDLPVR------------------GNAKFGDGIQIAQLALKHREN-KIQRQR 108 (192)
T ss_dssp --------------EEEESCHHHHHHHHTTCCCC------------------SCCCHHHHHHHHHHHHHTCSC-TTSEEE
T ss_pred --------------cCCCCCHHHHHHHHHcCCCC------------------CCchHHHHHHHHHHHHHhccc-cCCCce
Confidence 11222345567777776532 346799999999999986431 112368
Q ss_pred EEEEecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccC
Q 007267 272 VFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIES 351 (610)
Q Consensus 272 Ii~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~T 351 (610)
|++|+++.-+.++ .-..++++.+.++||.|+++.++.+.-+-. |..+++.+
T Consensus 109 iiil~~~~~~~~~----------------------------~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 109 IVAFVGSPIVEDE----------------------------KNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAA 159 (192)
T ss_dssp EEEEECSCCSSCH----------------------------HHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHH
T ss_pred EEEEEECCCCCCc----------------------------hhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhc
Confidence 8888876321111 113578999999999999999988765656 88888874
No 14
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.54 E-value=1.7e-06 Score=82.65 Aligned_cols=163 Identities=14% Similarity=0.104 Sum_probs=108.8
Q ss_pred CcEEEEEEeCCCChhHHHHHHHHHHHHHHhCC---CCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccccc
Q 007267 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (610)
Q Consensus 121 ~p~~vFvID~s~~~~~l~~l~~~l~~~l~~lp---~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~ 197 (610)
+.-.+|+||+|.+...++.+|+.+...++.+. ++.+||+|+|++..+..-
T Consensus 6 ~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~--------------------------- 58 (200)
T 1v7p_C 6 LIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVF--------------------------- 58 (200)
T ss_dssp CEEEEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEE---------------------------
T ss_pred cccEEEEEECCCCcccHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEE---------------------------
Confidence 45689999999997778889999999999885 689999999998765310
Q ss_pred cCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHh-hccccCC-CcccceEEEE
Q 007267 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNY-LGSEYGN-TFALARVFAF 275 (610)
Q Consensus 198 ~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~l-L~~~~~~-~~~~GkIi~F 275 (610)
|+..+ ..+..+.+.|+.|+.... ..+.+|.||..|... +....+. ......|+++
T Consensus 59 --~l~~~-----~~~~~~~~~i~~l~~~~G----------------~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivll 115 (200)
T 1v7p_C 59 --NLNTY-----KTKEEMIVATSQTSQYGG----------------DLTNTFGAIQYARKYAYSAASGGRRSATKVMVVV 115 (200)
T ss_dssp --CTTTC-----SSHHHHHHHHHHCCCCCC----------------SCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEE
T ss_pred --eCCCc-----CCHHHHHHHHHhhhccCC----------------CCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEE
Confidence 00000 123345566777753310 246799999999985 5432111 1123468889
Q ss_pred ecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecC----CCcC----hhcchhh
Q 007267 276 LSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITN----EYTD----LASLKFL 347 (610)
Q Consensus 276 ~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~----~~~~----l~~l~~l 347 (610)
+.|.++.+. -..+.+..+.+.||.|..+.+.. ..++ ..+|..+
T Consensus 116 TDG~~~~~~-----------------------------~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~i 166 (200)
T 1v7p_C 116 TDGESHDGS-----------------------------MLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAI 166 (200)
T ss_dssp ESSCCSCGG-----------------------------GHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHH
T ss_pred ccCCCCCcc-----------------------------cHHHHHHHHHHCCCEEEEEEecccccccccchhhHHHHHHHH
Confidence 999876321 01356777888998877777632 3445 5779999
Q ss_pred hccCccE-EEEeCCCC
Q 007267 348 SIESGGS-LFLYSSTD 362 (610)
Q Consensus 348 ~~~TGG~-v~~~~~~~ 362 (610)
|..|||. ++..++++
T Consensus 167 A~~~~g~~~~~~~~~~ 182 (200)
T 1v7p_C 167 ASIPTERYFFNVSDEA 182 (200)
T ss_dssp SCSSHHHHEEEESSSG
T ss_pred hCCccHhcEEEcCCHH
Confidence 9999986 45555553
No 15
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.52 E-value=2.2e-06 Score=83.32 Aligned_cols=162 Identities=13% Similarity=0.074 Sum_probs=108.1
Q ss_pred CcEEEEEEeCCCChhHHHHHHHHHHHHHHhCC---CCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccccc
Q 007267 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (610)
Q Consensus 121 ~p~~vFvID~s~~~~~l~~l~~~l~~~l~~lp---~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~ 197 (610)
+.-.+|+||+|.+...++.+|+.+...++.+. ++.+||+|+|++.++..- ++.+
T Consensus 22 ~~div~vlD~SgSM~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~-----------------------~l~~ 78 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEF-----------------------NLNK 78 (223)
T ss_dssp CEEEEEEEECSTTCCCHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEE-----------------------CTTT
T ss_pred cceEEEEEECCCChhhHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEE-----------------------ecCC
Confidence 45689999999998778889999999998874 789999999998765311 0000
Q ss_pred cCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHh-hccccC-CCcccceEEEE
Q 007267 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNY-LGSEYG-NTFALARVFAF 275 (610)
Q Consensus 198 ~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~l-L~~~~~-~~~~~GkIi~F 275 (610)
+ ..+..+.+.|+.|.... ...+.+|.||..|... +....+ .......|+++
T Consensus 79 ------~-----~~~~~~~~~i~~l~~~g----------------G~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iill 131 (223)
T 2b2x_A 79 ------Y-----SSTEEVLVAANKIVQRG----------------GRQTMTALGIDTARKEAFTEARGARRGVKKVMVIV 131 (223)
T ss_dssp ------C-----CSHHHHHHHHTTCCCCC----------------CSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEE
T ss_pred ------C-----CCHHHHHHHHHhhhccC----------------CCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEE
Confidence 0 01223444555554220 0136799999999987 442211 11123468889
Q ss_pred ecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcC---------hhcchh
Q 007267 276 LSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTD---------LASLKF 346 (610)
Q Consensus 276 ~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~---------l~~l~~ 346 (610)
++|.++.|. -..+.++.+.+.||.|..+.++.+ .+ ..+|..
T Consensus 132 TDG~~~~~~-----------------------------~~~~~~~~~~~~gi~v~~igvG~~-~~~~~~~~~~~~~~L~~ 181 (223)
T 2b2x_A 132 TDGESHDNY-----------------------------RLKQVIQDCEDENIQRFSIAILGH-YNRGNLSTEKFVEEIKS 181 (223)
T ss_dssp ESSCCTTGG-----------------------------GHHHHHHHHHTTTEEEEEEEECGG-GC---CCCHHHHHHHHT
T ss_pred cCCCCCCCc-----------------------------cHHHHHHHHHHCCCEEEEEEecCc-cccccccchhHHHHHHH
Confidence 999876542 023567778888988777776543 22 478999
Q ss_pred hhcc-CccEEEEeCCCC
Q 007267 347 LSIE-SGGSLFLYSSTD 362 (610)
Q Consensus 347 l~~~-TGG~v~~~~~~~ 362 (610)
+|.. |||.++..++++
T Consensus 182 iA~~p~~g~~~~~~~~~ 198 (223)
T 2b2x_A 182 IASEPTEKHFFNVSDEL 198 (223)
T ss_dssp TSCSSGGGTEEEESSTT
T ss_pred HhCCCchhcEEEeCCHH
Confidence 9998 999998887664
No 16
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.52 E-value=1.4e-06 Score=82.71 Aligned_cols=174 Identities=17% Similarity=0.187 Sum_probs=111.3
Q ss_pred CcEEEEEEeCCCCh--hHHHHHHHHHHHHHHhC-CCCcEEEEEeecceeEEEE-ecCCCcceeeeeeCCCCCcccccccc
Q 007267 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAV-PSGALFGLATFSHKIGLYD-VQGAIPVVKNVFIPSDTEDTLSLELE 196 (610)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~l~~~l~~~l~~l-p~~~~VglITf~~~V~~~~-l~~~~~~~~~v~~~~~~~~~~~~dl~ 196 (610)
+.-.+|+||+|.+. ..++.+++.++..++.+ +++.+||+|+|++.++..- +. +..
T Consensus 9 ~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~---------------------~~~ 67 (198)
T 1n3y_A 9 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFE---------------------EFR 67 (198)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHH---------------------HHH
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecC---------------------ccC
Confidence 45689999999986 35778899999999988 7899999999998754311 10 000
Q ss_pred ccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHH-HhhccccCC-CcccceEEE
Q 007267 197 DVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLF-NYLGSEYGN-TFALARVFA 274 (610)
Q Consensus 197 ~~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~-~lL~~~~~~-~~~~GkIi~ 274 (610)
.+..+.+.|+.+... ...+.++.||..|. .++....+. ......|++
T Consensus 68 --------------~~~~~~~~i~~l~~~-----------------~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iil 116 (198)
T 1n3y_A 68 --------------RSSNPLSLLASVHQL-----------------QGFTYTATAIQNVVHRLFHASYGARRDAAKILIV 116 (198)
T ss_dssp --------------HCSSGGGGGTTCCCC-----------------CSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEE
T ss_pred --------------CHHHHHHHHhcCcCC-----------------CCCchHHHHHHHHHHHHhCcccCCCCCCceEEEE
Confidence 001111223333211 14567999999999 555542111 112357899
Q ss_pred EecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCC---cChhcchhhhccC
Q 007267 275 FLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEY---TDLASLKFLSIES 351 (610)
Q Consensus 275 F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~---~~l~~l~~l~~~T 351 (610)
++.|.++.++-. +.+.+..+.+.|+.|..+.++.+. .+...|..+|..|
T Consensus 117 lTDG~~~~~~~~----------------------------~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~ 168 (198)
T 1n3y_A 117 ITDGKKEGDSLD----------------------------YKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKP 168 (198)
T ss_dssp EESSCCBSCSSC----------------------------HHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSS
T ss_pred ECCCCCCCCccc----------------------------HHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCC
Confidence 999988743210 134677788899988888876553 3688999999999
Q ss_pred ccEE-EEeCCCCC-CchhHHHHHHh
Q 007267 352 GGSL-FLYSSTDD-STLPQDIYRML 374 (610)
Q Consensus 352 GG~v-~~~~~~~~-~~l~~dl~~~l 374 (610)
||.. +..++++. ..+.++|.+.+
T Consensus 169 ~g~~~~~~~~~~~l~~~~~~i~~~i 193 (198)
T 1n3y_A 169 SQEHIFKVEDFDALKDIQNQLKEKI 193 (198)
T ss_dssp SGGGEEEESSGGGGGGGHHHHHHHH
T ss_pred CcccEEEeCCHHHHHHHHHHHHhhe
Confidence 9974 55565532 23444454433
No 17
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.49 E-value=5.7e-06 Score=78.10 Aligned_cols=159 Identities=18% Similarity=0.162 Sum_probs=107.4
Q ss_pred CcEEEEEEeCCCCh--hHHHHHHHHHHHHHHhCC---CCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccc
Q 007267 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL 195 (610)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~l~~~l~~~l~~lp---~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl 195 (610)
+.-.+|+||.|.+. ..++.+|+.+...++.++ ++.+||+|+|++.++..-
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~------------------------- 59 (189)
T 1atz_A 5 PLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDV------------------------- 59 (189)
T ss_dssp CEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEE-------------------------
T ss_pred ceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEE-------------------------
Confidence 45689999999986 568899999999999885 458999999998765311
Q ss_pred cccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhcccc-CCCcccce-EE
Q 007267 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEY-GNTFALAR-VF 273 (610)
Q Consensus 196 ~~~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~-~~~~~~Gk-Ii 273 (610)
|+.. ...++.+.+.|+.|+.. .+++.+|.||..|...+.... +......| ++
T Consensus 60 ----~l~~-----~~~~~~~~~~i~~l~~~-----------------~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vi 113 (189)
T 1atz_A 60 ----PWNV-----VPEKAHLLSLVDVMQRE-----------------GGPSQIGDALGFAVRYLTSEMHGARPGASKAVV 113 (189)
T ss_dssp ----CTTC-----CCCHHHHHHHHHTCCCC-----------------CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEE
T ss_pred ----ecCC-----CCCHHHHHHHHHhCcCC-----------------CCcchHHHHHHHHHHHHhccccCCCCCCCcEEE
Confidence 0000 01234566777777542 145779999999998885421 11101135 67
Q ss_pred EEecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccCcc
Q 007267 274 AFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGG 353 (610)
Q Consensus 274 ~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~TGG 353 (610)
++++|.++.. ..+.+..+.+.|+.|..+.++. ..+..+|..+|..++|
T Consensus 114 vltdg~~~~~-------------------------------~~~~~~~~~~~gi~v~~igvG~-~~~~~~L~~iA~~~~~ 161 (189)
T 1atz_A 114 ILVTDVSVDS-------------------------------VDAAADAARSNRVTVFPIGIGD-RYDAAQLRILAGPAGD 161 (189)
T ss_dssp EEECSCCSSC-------------------------------CHHHHHHHHHTTEEEEEEEESS-SSCHHHHHHHTGGGGG
T ss_pred EEeCCCCCch-------------------------------HHHHHHHHHHCCCEEEEEEcCC-cCCHHHHHHHHCCCcc
Confidence 7888754311 0356777788898777777654 3688899999999876
Q ss_pred -EEEEeCCCC
Q 007267 354 -SLFLYSSTD 362 (610)
Q Consensus 354 -~v~~~~~~~ 362 (610)
.++...+++
T Consensus 162 ~~~~~~~~~~ 171 (189)
T 1atz_A 162 SNVVKLQRIE 171 (189)
T ss_dssp GGCEEESSTT
T ss_pred cCEEEecChh
Confidence 566666654
No 18
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.46 E-value=2.7e-06 Score=80.66 Aligned_cols=175 Identities=14% Similarity=0.189 Sum_probs=109.9
Q ss_pred CcEEEEEEeCCCCh--hHHHHHHHHHHHHHHhC-CCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccccc
Q 007267 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAV-PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (610)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~l~~~l~~~l~~l-p~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~ 197 (610)
+.-.+|+||.|.+. ..++.+|+.+...++.+ +++.+||+|+|++.++..- ++.+
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~-----------------------~l~~ 61 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHF-----------------------TFKE 61 (194)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEE-----------------------CHHH
T ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEE-----------------------ecCC
Confidence 45689999999985 46788999999988877 5689999999999764310 0000
Q ss_pred cCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhh-ccccCC-CcccceEEEE
Q 007267 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYL-GSEYGN-TFALARVFAF 275 (610)
Q Consensus 198 ~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL-~~~~~~-~~~~GkIi~F 275 (610)
. ..+..+.+.|+.|+.. .+++.+|.||..|...+ ....+. ......|+++
T Consensus 62 ----------~-~~~~~~~~~i~~l~~~-----------------~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iill 113 (194)
T 1mf7_A 62 ----------F-QNNPNPRSLVKPITQL-----------------LGRTHTATGIRKVVRELFNITNGARKNAFKILVVI 113 (194)
T ss_dssp ----------H-HHSCCHHHHHTTCCCC-----------------CSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEE
T ss_pred ----------c-CCHHHHHHHHHhCcCC-----------------CCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEE
Confidence 0 0112244556666431 14567999999999644 322111 1112458889
Q ss_pred ecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCC---cChhcchhhhccC-
Q 007267 276 LSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEY---TDLASLKFLSIES- 351 (610)
Q Consensus 276 ~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~---~~l~~l~~l~~~T- 351 (610)
+.|.++..+-. +.+.+..+.+.||.|..+.++.+. .+..+|..+|..+
T Consensus 114 TDG~~~~d~~~----------------------------~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~~~~ 165 (194)
T 1mf7_A 114 TDGEKFGDPLG----------------------------YEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPP 165 (194)
T ss_dssp ESSCCBSCSSC----------------------------GGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSH
T ss_pred cCCCCCCCchh----------------------------hHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHhCCCC
Confidence 99988711100 012456677889877777775432 1368899999996
Q ss_pred ccEEEEeCCCCC-CchhHHHHHHh
Q 007267 352 GGSLFLYSSTDD-STLPQDIYRML 374 (610)
Q Consensus 352 GG~v~~~~~~~~-~~l~~dl~~~l 374 (610)
+|.++..++++. ..+...|.+.+
T Consensus 166 ~~~~~~~~~~~~l~~~~~~i~~~i 189 (194)
T 1mf7_A 166 RDHVFQVNNFEALKTIQNQLREKI 189 (194)
T ss_dssp HHHEEEESSGGGGGGGHHHHHHHH
T ss_pred cccEEEeCCHHHHHHHHHHHHHHH
Confidence 588888777642 23444554443
No 19
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.44 E-value=3.1e-06 Score=81.62 Aligned_cols=176 Identities=13% Similarity=0.075 Sum_probs=114.7
Q ss_pred CcEEEEEEeCCCChhHHHHHHHHHHHHHHhCC---CCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccccc
Q 007267 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (610)
Q Consensus 121 ~p~~vFvID~s~~~~~l~~l~~~l~~~l~~lp---~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~ 197 (610)
+.-.+|+||+|.+...++.+|+.+...++.+. ++.+||+|+|++.++..- ++.+
T Consensus 7 ~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~-----------------------~l~~ 63 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEF-----------------------NLNK 63 (213)
T ss_dssp CEEEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEE-----------------------CTTT
T ss_pred CccEEEEEECCCChhhHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEE-----------------------eccc
Confidence 45689999999998778889999999998774 789999999998765311 0000
Q ss_pred cCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhh-ccccC-CCcccceEEEE
Q 007267 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYL-GSEYG-NTFALARVFAF 275 (610)
Q Consensus 198 ~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL-~~~~~-~~~~~GkIi~F 275 (610)
+ ..+..+.+.|+.++... . ..+.+|.||..|...+ ....+ .......|+++
T Consensus 64 ------~-----~~~~~~~~~i~~l~~~~-G---------------~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iill 116 (213)
T 1pt6_A 64 ------Y-----SSTEEVLVAAKKIVQRG-G---------------RQTMTALGTDTARKEAFTEARGARRGVKKVMVIV 116 (213)
T ss_dssp ------C-----SSHHHHHHHHHTCCCCC-C---------------SSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEE
T ss_pred ------c-----CCHHHHHHHHHhccCCC-C---------------CcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEE
Confidence 0 01233445566654321 0 2367999999999864 42111 11123468889
Q ss_pred ecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCC----cC----hhcchhh
Q 007267 276 LSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEY----TD----LASLKFL 347 (610)
Q Consensus 276 ~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~----~~----l~~l~~l 347 (610)
+.|.++.|. -+.+.+..+.+.||.|..+.++.+. .+ ..+|..+
T Consensus 117 TDG~~~~~~-----------------------------~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~i 167 (213)
T 1pt6_A 117 TDGESHDNH-----------------------------RLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSI 167 (213)
T ss_dssp ESSCCSCSH-----------------------------HHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHH
T ss_pred cCCCCCCCc-----------------------------cHHHHHHHHHHCCCEEEEEEeccccccccccchhhHHHHHHH
Confidence 999876541 1235677788889877777664321 11 3689999
Q ss_pred hcc-CccEEEEeCCCCC-CchhHHHHHHhc
Q 007267 348 SIE-SGGSLFLYSSTDD-STLPQDIYRMLS 375 (610)
Q Consensus 348 ~~~-TGG~v~~~~~~~~-~~l~~dl~~~l~ 375 (610)
|.. |||.++..++++. ..+...|.+.+.
T Consensus 168 A~~~~~g~~~~~~~~~~l~~i~~~l~~~i~ 197 (213)
T 1pt6_A 168 ASEPTEKHFFNVSDELALVTIVKTLGERIF 197 (213)
T ss_dssp SCSSHHHHEEEESSGGGGGGGHHHHHHHHT
T ss_pred hCCCchhcEEEeCCHHHHHHHHHHHHHhhe
Confidence 999 7899988876642 344556555554
No 20
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.44 E-value=1e-08 Score=97.11 Aligned_cols=163 Identities=18% Similarity=0.137 Sum_probs=99.3
Q ss_pred CcEEEEEEeCCCCh--hHHHHHHHHHHHHHHhC-CCCcEEEEEeecc-eeEEEEecCCCcceeeeeeCCCCCcccccccc
Q 007267 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAV-PSGALFGLATFSH-KIGLYDVQGAIPVVKNVFIPSDTEDTLSLELE 196 (610)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~l~~~l~~~l~~l-p~~~~VglITf~~-~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~ 196 (610)
+..++|+||+|.+. ..++.+|+++...++.+ +++.+||||+|++ ... +.
T Consensus 5 ~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~-------------~~-------------- 57 (189)
T 2x31_A 5 DRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQ-------------VL-------------- 57 (189)
T ss_dssp CCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCC-------------BC--------------
T ss_pred CeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCce-------------Ee--------------
Confidence 45689999999986 56788999999999877 8899999999986 221 00
Q ss_pred ccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEe
Q 007267 197 DVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFL 276 (610)
Q Consensus 197 ~~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkIi~F~ 276 (610)
+|. ......+.+.|+.|+.. .++.++.||..|..++...... .....|++++
T Consensus 58 --~~~-------~~~~~~~~~~i~~l~~~------------------g~T~~~~al~~a~~~l~~~~~~-~~~~~ivliT 109 (189)
T 2x31_A 58 --LQP-------SRSLTQTKRQLQGLPGG------------------GGTPLASGMEMAMVTAKQARSR-GMTPTIALLT 109 (189)
T ss_dssp --TTT-------CSCHHHHHHHHHHCCCC------------------BCCCCHHHHHHHHHHHHTCTTT-CSSEEEEECC
T ss_pred --cCC-------CCCHHHHHHHHhcCCCC------------------CCCCHHHHHHHHHHHHHhccCC-CCceEEEEEC
Confidence 111 11234466677777643 3466999999999999753211 1135899999
Q ss_pred cCCCCCCCcccccccC-cCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccCccEE
Q 007267 277 SGPPDHGAGQLDTRRY-GEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSL 355 (610)
Q Consensus 277 ~g~pt~GpG~l~~~~~-~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~TGG~v 355 (610)
.|.++.|++.-..... .... .+++..+.+.||.|..+.+... +...|..+|..|||..
T Consensus 110 DG~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~gi~v~~ig~g~~--~~~~L~~iA~~~~G~~ 168 (189)
T 2x31_A 110 DGRGNIALDGTANRELAGEQA-------------------TKVARAIRASGMPAVIIDTAMR--PNPALVDLARTMDAHY 168 (189)
T ss_dssp BSCCSSCCTHHHHHGGGTCCC-------------------EEEEECTGGGGSCCTHHHHHHS--SCSSSCSTTTEEEESS
T ss_pred CCCCCCCCCccccccchhHHH-------------------HHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHhcCCeE
Confidence 9999987531100000 0000 0011112233433333333222 6678999999999985
Q ss_pred EEeC
Q 007267 356 FLYS 359 (610)
Q Consensus 356 ~~~~ 359 (610)
++.+
T Consensus 169 ~~~~ 172 (189)
T 2x31_A 169 IALP 172 (189)
T ss_dssp TTTH
T ss_pred EECC
Confidence 5443
No 21
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.43 E-value=2.8e-06 Score=82.18 Aligned_cols=171 Identities=11% Similarity=0.140 Sum_probs=107.7
Q ss_pred CCcEEEEEEeCCCCh--hHHHHHHHHHHHHHHhC---CCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCcccccc
Q 007267 120 ARPVYVAAVDLSSSE--EFLELTRSALQAALEAV---PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLE 194 (610)
Q Consensus 120 ~~p~~vFvID~s~~~--~~l~~l~~~l~~~l~~l---p~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~d 194 (610)
.+.-++||||+|.+. ..++.+|+++...++.+ +.+.+||||+|++.++..- .
T Consensus 14 ~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~-----------------------~ 70 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWV-----------------------K 70 (223)
T ss_dssp -CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEE-----------------------C
T ss_pred CceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceee-----------------------c
Confidence 345699999999986 46888888888887654 5678999999998765311 0
Q ss_pred ccccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCC-----Cccc
Q 007267 195 LEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGN-----TFAL 269 (610)
Q Consensus 195 l~~~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~-----~~~~ 269 (610)
+.+ +....+..+.+.|+.|+...... ...+.+|.||..|...|....+. ....
T Consensus 71 ~~~---------~~~~~~~~~~~~i~~l~~~~~~~-------------~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~ 128 (223)
T 1q0p_A 71 VSE---------ADSSNADWVTKQLNEINYEDHKL-------------KSGTNTKKALQAVYSMMSWPDDVPPEGWNRTR 128 (223)
T ss_dssp TTS---------GGGGCHHHHHHHHHTCCTTSCSC-------------TTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCE
T ss_pred ccc---------CCCCCHHHHHHHHHhcccccccC-------------CCCccHHHHHHHHHHHhhccccccccccccCC
Confidence 000 11223455777888886531000 15678999999999999753210 0112
Q ss_pred ceEEEEecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHH---------HHHHHcCcEEEEEEecCCCcC
Q 007267 270 ARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLA---------AVAVQAGVCVDIFAITNEYTD 340 (610)
Q Consensus 270 GkIi~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la---------~~~~~~gisvDlf~~~~~~~~ 340 (610)
..|++++.|.++.|.... ..-+.+. ..+.+.||.|..+.++. .++
T Consensus 129 ~~iillTDG~~~~g~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~-~~~ 182 (223)
T 1q0p_A 129 HVIILMTDGLHNMGGDPI-------------------------TVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVN 182 (223)
T ss_dssp EEEEEEECSCCCSSSCTH-------------------------HHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSS-CCC
T ss_pred eEEEEECCCCCCCCCChH-------------------------HHHHHHHHHHhhhhhhhhcccCCcEEEEEEecC-cCC
Confidence 458899999998763100 0001111 22234566555555543 478
Q ss_pred hhcchhhhccCcc--EEEEeCCC
Q 007267 341 LASLKFLSIESGG--SLFLYSST 361 (610)
Q Consensus 341 l~~l~~l~~~TGG--~v~~~~~~ 361 (610)
...|..+|..||| .++..+++
T Consensus 183 ~~~L~~iA~~~~G~~~~~~~~~~ 205 (223)
T 1q0p_A 183 QVNINALASKKDNEQHVFKVKDM 205 (223)
T ss_dssp HHHHHHHSCCCTTCCCEEETTC-
T ss_pred HHHHHHHhcCCCCCceEEEcCCH
Confidence 8899999999999 66666554
No 22
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.43 E-value=2.1e-06 Score=94.22 Aligned_cols=177 Identities=13% Similarity=0.101 Sum_probs=114.0
Q ss_pred CcEEEEEEeCCCCh--hHHHHHHHHHHHHHHhC---CCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccc
Q 007267 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAV---PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL 195 (610)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~l~~~l~~~l~~l---p~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl 195 (610)
+.-++|+||+|.+. ..++.+|+++...++.| +++.+||||+|++..++.-
T Consensus 9 ~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~------------------------- 63 (509)
T 2odp_A 9 HLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLM------------------------- 63 (509)
T ss_dssp EEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEE-------------------------
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeE-------------------------
Confidence 45689999999986 46888999999998877 7899999999998765411
Q ss_pred cccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCC--------c
Q 007267 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNT--------F 267 (610)
Q Consensus 196 ~~~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~--------~ 267 (610)
|+.. +....++.+.+.|+.|+... ... ..++.++.||..|.++|....... .
T Consensus 64 ----~l~~---~~~~~~~~~~~~l~~l~~~~---~~~----------~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~ 123 (509)
T 2odp_A 64 ----SVLN---DNSRDMTEVISSLENANYKD---HEN----------GTGTNTYAALNSVYLMMNNQMRLLGMETMAWQE 123 (509)
T ss_dssp ----CTTS---GGGGCHHHHHHHHHTCCGGG---GTT----------CCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHT
T ss_pred ----eccC---CCCCCHHHHHHHHHhccccc---CCC----------CCCccHHHHHHHHHHHHhhcccccccccccccc
Confidence 0000 01123455677788776431 000 145779999999999995422100 0
Q ss_pred ccceEEEEecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHH---------HcCcEEEEEEecCCC
Q 007267 268 ALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAV---------QAGVCVDIFAITNEY 338 (610)
Q Consensus 268 ~~GkIi~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~---------~~gisvDlf~~~~~~ 338 (610)
....|+++++|.++.|.. . ...++.+. +.|+.|..+.+..+.
T Consensus 124 ~~~~iillTDG~~~~~~~-~----------------------------~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~ 174 (509)
T 2odp_A 124 IRHAIILLTDGKSNMGGS-P----------------------------KTAVDHIREILNINQKRNDYLDIYAIGVGKLD 174 (509)
T ss_dssp EEEEEEEESCSCCCSSSC-T----------------------------HHHHHHHHHHTTCCSTTGGGEEEEEEEESSSC
T ss_pred cceEEEEECCCCccCCCC-h----------------------------hHHHHHHHHHhhccccccCceEEEEEEcCCCc
Confidence 113589999999887621 0 01222222 567766666665544
Q ss_pred cChhcchhhhccCccE--EEEeCCCCCCchhHHHHHH
Q 007267 339 TDLASLKFLSIESGGS--LFLYSSTDDSTLPQDIYRM 373 (610)
Q Consensus 339 ~~l~~l~~l~~~TGG~--v~~~~~~~~~~l~~dl~~~ 373 (610)
.+..+|..+|..+||. ++..+++ ..+.+-+.+.
T Consensus 175 ~~~~~L~~iA~~~~G~~~~~~~~~~--~~l~~~~~~i 209 (509)
T 2odp_A 175 VDWRELNELGSKKDGERHAFILQDT--KALHQVFEHM 209 (509)
T ss_dssp CCHHHHHHHSCCCTTCCCEEEESSH--HHHHHHHHHH
T ss_pred ccHHHHHhhccCCCCceeeEEecCH--HHHHHHHHhh
Confidence 8999999999999998 5555544 3444444443
No 23
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.42 E-value=5.1e-06 Score=83.84 Aligned_cols=165 Identities=17% Similarity=0.105 Sum_probs=110.0
Q ss_pred CcEEEEEEeCCCChh--HH-HHHHHHHHHHHHhCCC---CcEEEEEeecceeEEE-EecCCCcceeeeeeCCCCCccccc
Q 007267 121 RPVYVAAVDLSSSEE--FL-ELTRSALQAALEAVPS---GALFGLATFSHKIGLY-DVQGAIPVVKNVFIPSDTEDTLSL 193 (610)
Q Consensus 121 ~p~~vFvID~s~~~~--~l-~~l~~~l~~~l~~lp~---~~~VglITf~~~V~~~-~l~~~~~~~~~v~~~~~~~~~~~~ 193 (610)
+--++||||.|.+.+ .+ +.+++++...++.|+. +.+||||+|++.++.. .+....
T Consensus 21 ~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~------------------ 82 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDA------------------ 82 (281)
T ss_dssp CEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSC------------------
T ss_pred ceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccC------------------
Confidence 445999999999863 34 8899999999998875 7899999999876432 221100
Q ss_pred cccccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEE
Q 007267 194 ELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVF 273 (610)
Q Consensus 194 dl~~~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkIi 273 (610)
...+..+.+.|+.|+... .. .+++.+|.||..|...|...+........|+
T Consensus 83 ---------------~~~~~~l~~~i~~l~~~~-~~-------------~G~T~~~~aL~~a~~~l~~~~~r~~~~~~ii 133 (281)
T 4hqf_A 83 ---------------SKNKEKALIIIKSLLSTN-LP-------------YGKTSLTDALLQVRKHLNDRINRENANQLVV 133 (281)
T ss_dssp ---------------SSCHHHHHHHHHHHHHTT-GG-------------GCSCCHHHHHHHHHHHHHTSCCCTTCEEEEE
T ss_pred ---------------ccCHHHHHHHHHHHhhcc-CC-------------CCCccHHHHHHHHHHHHHhccCCCCCCEEEE
Confidence 002344556666665311 00 1457799999999888865432111235688
Q ss_pred EEecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhcc--C
Q 007267 274 AFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIE--S 351 (610)
Q Consensus 274 ~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~--T 351 (610)
++++|.++.+ .-..+.+..+.+.||.|-.+.++.+ .+-..|..++.. +
T Consensus 134 llTDG~~~d~-----------------------------~~~~~~~~~l~~~gv~i~~igiG~~-~~~~~L~~iA~~~~~ 183 (281)
T 4hqf_A 134 ILTDGIPDSI-----------------------------QDSLKESRKLSDRGVKIAVFGIGQG-INVAFNRFLVGCHPS 183 (281)
T ss_dssp EEESSCCSCH-----------------------------HHHHHHHHHHHHTTCEEEEEEESSS-CCHHHHHHHTTSCSS
T ss_pred EEecCCCCCc-----------------------------HHHHHHHHHHHHCCCEEEEEeCCCc-cCHHHHHhhhCCCCC
Confidence 8888877521 0123567777888987777766543 677888999877 6
Q ss_pred cc--EEEEeCCCC
Q 007267 352 GG--SLFLYSSTD 362 (610)
Q Consensus 352 GG--~v~~~~~~~ 362 (610)
|| .++...+|+
T Consensus 184 ~g~~~~~~~~~~~ 196 (281)
T 4hqf_A 184 DGKCNLYADSAWE 196 (281)
T ss_dssp SSCCTTEEEECGG
T ss_pred CCCCceEEecchh
Confidence 76 777777775
No 24
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.37 E-value=1.2e-05 Score=80.32 Aligned_cols=179 Identities=13% Similarity=0.066 Sum_probs=114.4
Q ss_pred CcEEEEEEeCCCCh--hHH-HHHHHHHHHHHHhCC---CCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCcccccc
Q 007267 121 RPVYVAAVDLSSSE--EFL-ELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLE 194 (610)
Q Consensus 121 ~p~~vFvID~s~~~--~~l-~~l~~~l~~~l~~lp---~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~d 194 (610)
+--++|+||.|.+. ..+ +.+++.+...++.|. ++.+||||+|++.+...-
T Consensus 18 ~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~------------------------ 73 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELI------------------------ 73 (266)
T ss_dssp CEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEE------------------------
T ss_pred ceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEE------------------------
Confidence 34589999999986 345 578999999999886 789999999998754311
Q ss_pred ccccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEE
Q 007267 195 LEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFA 274 (610)
Q Consensus 195 l~~~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkIi~ 274 (610)
|+..+ .+..+..+.+.|+.|+.... ..+.+.+|.||..|..++...+......-.|++
T Consensus 74 -----~l~~~---~~~~~~~~~~~i~~l~~~~~--------------~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIl 131 (266)
T 4hqo_A 74 -----RLGSG---QSIDKRQALSKVTELRKTYT--------------PYGTTSMTAALDEVQKHLNDRVNREKAIQLVIL 131 (266)
T ss_dssp -----CTTSH---HHHCHHHHHHHHHHHHHHCC--------------CCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEE
T ss_pred -----ecCCC---CccCHHHHHHHHHHhhhccC--------------CCCCCCHHHHHHHHHHHHhhccccCCCCeEEEE
Confidence 11100 01124556777777741100 014577999999999998764321112357888
Q ss_pred EecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccC--c
Q 007267 275 FLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIES--G 352 (610)
Q Consensus 275 F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~T--G 352 (610)
+++|.++. + .-..+.+..+.+.||.|-.+.++. ..+-..|..++... |
T Consensus 132 lTDG~~~d-~----------------------------~~~~~~a~~l~~~gi~i~~iGiG~-~~~~~~L~~iA~~~~~~ 181 (266)
T 4hqo_A 132 MTDGVPNS-K----------------------------YRALEVANKLKQRNVRLAVIGIGQ-GINHQFNRLIAGCRPRE 181 (266)
T ss_dssp EECSCCSC-H----------------------------HHHHHHHHHHHHTTCEEEEEECSS-SCCHHHHHHHHTCCTTC
T ss_pred EccCCCCC-c----------------------------hHHHHHHHHHHHCCCEEEEEecCc-ccCHHHHHHhhCCCCCC
Confidence 88887751 0 012357788888997776666654 46777778999775 4
Q ss_pred c--EEEEeCCCCCCchhHHHHHHhccCc
Q 007267 353 G--SLFLYSSTDDSTLPQDIYRMLSRPY 378 (610)
Q Consensus 353 G--~v~~~~~~~~~~l~~dl~~~l~~~~ 378 (610)
| .++++.+|+ .|. ++.+.+.+..
T Consensus 182 g~~~~~~~~d~~--~L~-~i~~~l~~~i 206 (266)
T 4hqo_A 182 PNCKFYSYADWN--EAV-ALIKPFIAKV 206 (266)
T ss_dssp SSCTTEECSCHH--HHH-HHHHHHHCCC
T ss_pred CCCCeEEecCHH--HHH-HHHHHHHhhh
Confidence 3 677766553 343 3444444443
No 25
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.34 E-value=2.5e-05 Score=72.85 Aligned_cols=153 Identities=16% Similarity=0.104 Sum_probs=98.6
Q ss_pred CcEEEEEEeCCCChhH-HHHHHHHHHHHHHh-CCCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCcccccccccc
Q 007267 121 RPVYVAAVDLSSSEEF-LELTRSALQAALEA-VPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDV 198 (610)
Q Consensus 121 ~p~~vFvID~s~~~~~-l~~l~~~l~~~l~~-lp~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~~ 198 (610)
+.-++|+||+|.+... -...++.+++++.. +.++.+||+|+|++..+..-
T Consensus 6 ~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~---------------------------- 57 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIIL---------------------------- 57 (182)
T ss_dssp CEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEE----------------------------
T ss_pred ceeEEEEEECCCCcccCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceEEE----------------------------
Confidence 4568999999998621 11234445555544 45689999999998654311
Q ss_pred CccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecC
Q 007267 199 MPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSG 278 (610)
Q Consensus 199 ~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkIi~F~~g 278 (610)
|+ ...+..+...|+.|..... .+++.++.||..|...+....+ ......|++++.|
T Consensus 58 -~~-------~~~~~~~~~~l~~l~~~~~---------------~g~T~~~~al~~a~~~l~~~~~-~~~~~~iiliTDG 113 (182)
T 1shu_X 58 -PL-------TGDRGKISKGLEDLKRVSP---------------VGETYIHEGLKLANEQIQKAGG-LKTSSIIIALTDG 113 (182)
T ss_dssp -EE-------ECCHHHHHHHHHHHHTCCC---------------CSCCCHHHHHHHHHHHHHHHTG-GGSCEEEEEEECC
T ss_pred -CC-------CCCHHHHHHHHHhcccCCC---------------CCCchHHHHHHHHHHHHHhccC-CCCCeEEEEECCC
Confidence 00 0123345666666653211 1456799999999999965421 0123688889999
Q ss_pred CCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccCccE
Q 007267 279 PPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGS 354 (610)
Q Consensus 279 ~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~TGG~ 354 (610)
.++.+. .....+.+..+.+.|+.|..+.++ ..+-.+|..++..|||.
T Consensus 114 ~~~~~~---------------------------~~~~~~~~~~~~~~~i~i~~igvg--~~~~~~L~~ia~~~~~~ 160 (182)
T 1shu_X 114 KLDGLV---------------------------PSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQV 160 (182)
T ss_dssp CCCTTH---------------------------HHHHHHHHHHHHHTTCEEEEEECS--SCCHHHHHHHSSSGGGE
T ss_pred CcCCCC---------------------------chhHHHHHHHHHhCCCEEEEEeCC--cCCHHHHHHHhCCCCce
Confidence 875210 112245677788889877777665 56888999999999885
No 26
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.31 E-value=2.8e-05 Score=72.75 Aligned_cols=163 Identities=11% Similarity=0.066 Sum_probs=103.1
Q ss_pred cEEEEEEeCCCCh--hHHHHHHHHHHHHHHhC-CCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCcccccccccc
Q 007267 122 PVYVAAVDLSSSE--EFLELTRSALQAALEAV-PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDV 198 (610)
Q Consensus 122 p~~vFvID~s~~~--~~l~~l~~~l~~~l~~l-p~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~~ 198 (610)
.-.+|+||.|.+. ..++.+|+.+...++.+ +++.+||+|+|++.++..-
T Consensus 3 ~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~---------------------------- 54 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEF---------------------------- 54 (179)
T ss_dssp EEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEE----------------------------
T ss_pred ccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEE----------------------------
Confidence 3589999999985 45788999999999988 4568999999998765310
Q ss_pred CccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHH-hhccccCC-CcccceEEEEe
Q 007267 199 MPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFN-YLGSEYGN-TFALARVFAFL 276 (610)
Q Consensus 199 ~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~-lL~~~~~~-~~~~GkIi~F~ 276 (610)
|+.. . ..+..+.++++.|+... .++.+|.||..|.. ++....+. ....-.|++++
T Consensus 55 -~l~~----~-~~~~~~~~~~~~i~~~~-----------------g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillT 111 (179)
T 1mjn_A 55 -DFSD----Y-VKRKDPDALLKHVKHML-----------------LLTNTFGAINYVATEVFREELGARPDATKVLIIIT 111 (179)
T ss_dssp -CHHH----H-HHHCCHHHHHTTCCCCC-----------------BCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEE
T ss_pred -cCcc----c-CCHHHHHHHHHhcccCC-----------------CCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEc
Confidence 0000 0 01223556677665431 34679999999985 55432211 11123688899
Q ss_pred cCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcC----hhcchhhhccCc
Q 007267 277 SGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTD----LASLKFLSIESG 352 (610)
Q Consensus 277 ~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~----l~~l~~l~~~TG 352 (610)
.|.++.|.- . + .+.|+.|-.+.++.+ .+ ..+|..+|..+|
T Consensus 112 DG~~~~~~~-~----------------------~------------~~~~i~i~~igvG~~-~~~~~~~~~L~~iA~~~~ 155 (179)
T 1mjn_A 112 DGEATDSGN-I----------------------D------------AAKDIIRYIIGIGKH-FQTKESQETLHKFASKPA 155 (179)
T ss_dssp SSCCSSCSC-C----------------------G------------GGTTSEEEEEEESGG-GCSHHHHHTTGGGSCSCH
T ss_pred CCCCCCCcc-h----------------------H------------HHCCCEEEEEEcccc-ccccccHHHHHHHhCCcc
Confidence 998875420 0 0 135666655555433 33 478999999998
Q ss_pred c-EEEEeCCCCC-CchhHHHH
Q 007267 353 G-SLFLYSSTDD-STLPQDIY 371 (610)
Q Consensus 353 G-~v~~~~~~~~-~~l~~dl~ 371 (610)
| .++..++|+. ..+.++|.
T Consensus 156 ~~~~~~~~~~~~L~~i~~~i~ 176 (179)
T 1mjn_A 156 SEFVKILDTFEKLKDLCTELQ 176 (179)
T ss_dssp HHHEEEESSGGGSCCHHHHHH
T ss_pred HhcEEEeCCHHHHHHHHHHHH
Confidence 8 4677777652 23444443
No 27
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.26 E-value=1.1e-05 Score=87.97 Aligned_cols=164 Identities=11% Similarity=0.127 Sum_probs=106.4
Q ss_pred EEEEEEeCCCCh--hHHHHHHHHHHHHHHhC---CCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccccc
Q 007267 123 VYVAAVDLSSSE--EFLELTRSALQAALEAV---PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (610)
Q Consensus 123 ~~vFvID~s~~~--~~l~~l~~~l~~~l~~l---p~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~ 197 (610)
-.+||||+|.+. ..++.+|+++...++.+ +++.+||||+|++..++.- ++.+
T Consensus 3 div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~-----------------------~~~~ 59 (497)
T 1rrk_A 3 NIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWV-----------------------KVSE 59 (497)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE-----------------------CTTS
T ss_pred eEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEee-----------------------cccc
Confidence 479999999986 57888999888888754 5689999999998665311 0100
Q ss_pred cCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccC--C---CcccceE
Q 007267 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYG--N---TFALARV 272 (610)
Q Consensus 198 ~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~--~---~~~~GkI 272 (610)
+....++.+.+.|+.|+...... ..++.+|.||..|..+|..... . ......|
T Consensus 60 ---------~~~~~~~~~~~~l~~l~~~~~~~-------------~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~i 117 (497)
T 1rrk_A 60 ---------ADSSNADWVTKQLNEINYEDHKL-------------KSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVI 117 (497)
T ss_dssp ---------GGGGCHHHHHHHHHHCCGGGSCC-------------TTCCCHHHHHHHHHHHHCCC------CGGGCEEEE
T ss_pred ---------ccccCHHHHHHHHHhCcCccccc-------------cCccCHHHHHHHHHHHhhhhhccccccccccceEE
Confidence 12234566778888886431000 1467899999999999943110 0 0013578
Q ss_pred EEEecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHH-------------HHcCcEEEEEEecCCCc
Q 007267 273 FAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVA-------------VQAGVCVDIFAITNEYT 339 (610)
Q Consensus 273 i~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~-------------~~~gisvDlf~~~~~~~ 339 (610)
+++++|.++.|.... ..+..+ .+.||.|..+.++ +.+
T Consensus 118 illTDG~~~~g~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG-~~~ 167 (497)
T 1rrk_A 118 ILMTDGLHNMGGDPI-----------------------------TVIDEIRDLLYIGKDRKNPREDYLDVYVFGVG-PLV 167 (497)
T ss_dssp EEEECSCCCSSSCTH-----------------------------HHHHHHHHHTTCSSCC-CCCGGGEEEEEEECS-SSC
T ss_pred EEEeCCCcccCCChh-----------------------------HHHHHHHHHhhhhcccccchhcCeeEEEecCC-Ccc
Confidence 899999998864211 112222 2336655555543 347
Q ss_pred ChhcchhhhccCcc--EEEEeCCC
Q 007267 340 DLASLKFLSIESGG--SLFLYSST 361 (610)
Q Consensus 340 ~l~~l~~l~~~TGG--~v~~~~~~ 361 (610)
+...|..+|..+|| .++..+++
T Consensus 168 ~~~~L~~iA~~~~g~~~~~~~~~~ 191 (497)
T 1rrk_A 168 NQVNINALASKKDNEQHVCKVKDM 191 (497)
T ss_dssp CHHHHHHHSCCCTTCCCEEETTCH
T ss_pred CHHHHHHHhcCCCCcceEEEeCCH
Confidence 88999999999999 76666543
No 28
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.23 E-value=1.6e-05 Score=74.45 Aligned_cols=158 Identities=13% Similarity=0.033 Sum_probs=102.3
Q ss_pred cEEEEEEeCCCCh-hHHHHHHHHHHHHHHh-CCCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccccccC
Q 007267 122 PVYVAAVDLSSSE-EFLELTRSALQAALEA-VPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVM 199 (610)
Q Consensus 122 p~~vFvID~s~~~-~~l~~l~~~l~~~l~~-lp~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~~~ 199 (610)
.-++|+||+|.+. +..+.+++.++++++. +.++.+||+|+|++.++..-
T Consensus 8 ~div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~----------------------------- 58 (185)
T 3n2n_F 8 FDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLM----------------------------- 58 (185)
T ss_dssp EEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEE-----------------------------
T ss_pred eeEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEe-----------------------------
Confidence 3489999999986 2355566677776665 45689999999998665411
Q ss_pred ccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhcccc-CCCcccceEEEEecC
Q 007267 200 PLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEY-GNTFALARVFAFLSG 278 (610)
Q Consensus 200 p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~-~~~~~~GkIi~F~~g 278 (610)
| +.+.++.+...|+.|+...+ .+++.+|.||..|...|.... +.......|++++.|
T Consensus 59 ~-------l~~~~~~~~~~i~~l~~~~~---------------~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG 116 (185)
T 3n2n_F 59 K-------LTEDREQIRQGLEELQKVLP---------------GGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDG 116 (185)
T ss_dssp E-------EECCHHHHHHHHHHHHTCCC---------------CSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECC
T ss_pred c-------cCCCHHHHHHHHHHHhhhcC---------------CCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCC
Confidence 1 11134456677777764311 145779999999999773211 100113478888888
Q ss_pred CCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccCccEEEEe
Q 007267 279 PPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLY 358 (610)
Q Consensus 279 ~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~TGG~v~~~ 358 (610)
.++.++. .-..+.+..+.+.|+.|..+.++ ..+-.+|..+|.. +|.+|..
T Consensus 117 ~~~~~~~---------------------------~~~~~~~~~~~~~gi~i~~igvg--~~~~~~L~~iA~~-~~~~~~~ 166 (185)
T 3n2n_F 117 ELHEDLF---------------------------FYSEREANRSRDLGAIVYAVGVK--DFNETQLARIADS-KDHVFPV 166 (185)
T ss_dssp CCCHHHH---------------------------HHHHHHHHHHHHTTEEEEEEECS--SCCHHHHTTTSSS-GGGEEEH
T ss_pred CCCCCcc---------------------------cchHHHHHHHHHCCCEEEEEEec--cCCHHHHHHHhCC-CCCeEEe
Confidence 7643211 01135777888888776666665 6788999999965 5777766
Q ss_pred CC
Q 007267 359 SS 360 (610)
Q Consensus 359 ~~ 360 (610)
.+
T Consensus 167 ~~ 168 (185)
T 3n2n_F 167 ND 168 (185)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 29
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=98.14 E-value=3.8e-05 Score=73.11 Aligned_cols=152 Identities=12% Similarity=0.116 Sum_probs=96.3
Q ss_pred CcEEEEEEeCCCCh--hHHHHHHHHHHHHHHhC---CCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccc
Q 007267 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAV---PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL 195 (610)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~l~~~l~~~l~~l---p~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl 195 (610)
+--.+|+||.|.+. ..++.+|+.+...++.+ +++.+||||+|++.++..- ++
T Consensus 21 ~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~-----------------------~l 77 (199)
T 3zqk_A 21 VLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEY-----------------------PF 77 (199)
T ss_dssp CCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEE-----------------------CT
T ss_pred CcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEE-----------------------ec
Confidence 34589999999986 46888999999999988 5789999999998765411 01
Q ss_pred cccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhh-ccccCCC-cccceEE
Q 007267 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYL-GSEYGNT-FALARVF 273 (610)
Q Consensus 196 ~~~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL-~~~~~~~-~~~GkIi 273 (610)
..+ ..++.+.+.|+.++... ...+.+|.||..|...+ ....+.. ...-.|+
T Consensus 78 ------~~~-----~~~~~~~~~i~~l~~~g----------------g~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~ii 130 (199)
T 3zqk_A 78 ------SEA-----QSKGDILQRLREIRYQG----------------GNRTNTGLALRYLSDHSFLVSQGDREQAPNLVY 130 (199)
T ss_dssp ------TSC-----CCHHHHHHHHHHCCCCC----------------CSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEE
T ss_pred ------CCc-----CCHHHHHHHHHhCcCCC----------------CCcChHHHHHHHHHHHhhCcccCCCCCCCeEEE
Confidence 000 12345667777776431 02467999999998753 3222111 1123577
Q ss_pred EEecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecC-CCcChhcchhhhccCc
Q 007267 274 AFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITN-EYTDLASLKFLSIESG 352 (610)
Q Consensus 274 ~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~-~~~~l~~l~~l~~~TG 352 (610)
++++|.++.. + .. . ..| |.+|+++- +..+..+|..+|. +
T Consensus 131 llTDG~~~d~---v-----------------~~---~-------------~~~--v~v~~iGiG~~~~~~~L~~iA~--~ 170 (199)
T 3zqk_A 131 MVTGNPASDE---I-----------------KR---L-------------PGD--IQVVPIGVGPNANVQELERIGW--P 170 (199)
T ss_dssp EEECSCCSSC---C-----------------CC---C-------------CTT--EEEEEEEESTTCCHHHHHHHHT--T
T ss_pred EEeCCCCchH---H-----------------HH---H-------------hCC--CEEEEEEcCCCCCHHHHHHHhC--C
Confidence 7888754210 0 00 0 035 45565543 3688999999997 5
Q ss_pred cEEEEeCCCC
Q 007267 353 GSLFLYSSTD 362 (610)
Q Consensus 353 G~v~~~~~~~ 362 (610)
|..++.++|+
T Consensus 171 ~~~~~~~~~~ 180 (199)
T 3zqk_A 171 NAPILIQDFE 180 (199)
T ss_dssp SCCEEESCTT
T ss_pred CceEEeCCHH
Confidence 5566777765
No 30
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.09 E-value=5.6e-06 Score=95.06 Aligned_cols=177 Identities=12% Similarity=0.127 Sum_probs=105.6
Q ss_pred EEEEEEeCCCCh--hHHHHHHHHHHHHHHhCC---CCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccccc
Q 007267 123 VYVAAVDLSSSE--EFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (610)
Q Consensus 123 ~~vFvID~s~~~--~~l~~l~~~l~~~l~~lp---~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~ 197 (610)
-++||||.|.+. ..++.+|+++...++.|+ .+.+||||+|++.+...-
T Consensus 245 div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~--------------------------- 297 (741)
T 3hrz_D 245 NIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWV--------------------------- 297 (741)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE---------------------------
T ss_pred eEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeE---------------------------
Confidence 489999999986 458889999998888764 568999999998654311
Q ss_pred cCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccc--cCCC---cccceE
Q 007267 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSE--YGNT---FALARV 272 (610)
Q Consensus 198 ~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~--~~~~---~~~GkI 272 (610)
|+..+ -...++.+.+.|+.|+..... ...++.+|.||..|...|... +... ...-.|
T Consensus 298 --~l~~~---~~~~~~~~~~~i~~l~~~~~~-------------~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~i 359 (741)
T 3hrz_D 298 --KVSEA---DSSNADWVTKQLNEINYEDHK-------------LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVI 359 (741)
T ss_dssp --CTTSG---GGGCHHHHHHHHTTCCGGGGS-------------SSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEE
T ss_pred --eeccc---CCcCHHHHHHHHHhccccccc-------------CCCChHHHHHHHHHHHHHhhhhhccccchhccCeEE
Confidence 00000 011345566777777532000 015678999999999998321 1000 011258
Q ss_pred EEEecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchhhhccCc
Q 007267 273 FAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESG 352 (610)
Q Consensus 273 i~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~l~~~TG 352 (610)
+++++|.++.|.......+. ++ +.. ...+.++.+.+.||.|..+.++. .++-.+|..||..+|
T Consensus 360 illTDG~~n~g~~p~~~~~~---i~------~~~-------~~~~~a~~~~~~gi~i~~igvG~-~~~~~~L~~ia~~~~ 422 (741)
T 3hrz_D 360 ILMTDGLHNMGGDPITVIDE---IR------DLL-------YIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKD 422 (741)
T ss_dssp EEEECSCCCSSSCTHHHHHH---HH------HHT-------TCSSCTTCCCGGGEEEEEEECSS-SCCHHHHHHHSCCCT
T ss_pred EEECCCccccCCCchHHHHH---HH------HHh-------hcccccccccccCeeEEEEeCCC-cCCHHHHHHHhcCCC
Confidence 89999999887421111000 00 000 00012334445665555555432 488899999999999
Q ss_pred cE--EEEeCCC
Q 007267 353 GS--LFLYSST 361 (610)
Q Consensus 353 G~--v~~~~~~ 361 (610)
|. ++..+++
T Consensus 423 g~~~~~~~~~~ 433 (741)
T 3hrz_D 423 NEQHVFKVKDM 433 (741)
T ss_dssp TCCCEECBSSH
T ss_pred CcceEEEeCCH
Confidence 96 5555554
No 31
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.08 E-value=8.9e-05 Score=69.16 Aligned_cols=145 Identities=17% Similarity=0.110 Sum_probs=90.5
Q ss_pred CcEEEEEEeCCCCh--hHHHHHHHHHHHHHHhCC---CCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccc
Q 007267 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL 195 (610)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~l~~~l~~~l~~lp---~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl 195 (610)
+.-++|+||.|.+. ..++.+|+.+...++.++ ++.+||+|+|++.++..-
T Consensus 17 ~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~------------------------- 71 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQW------------------------- 71 (178)
T ss_dssp CEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEE-------------------------
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEE-------------------------
Confidence 45699999999986 468889999999999885 458999999998764310
Q ss_pred cccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccc--cCCCcccceEE
Q 007267 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSE--YGNTFALARVF 273 (610)
Q Consensus 196 ~~~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~--~~~~~~~GkIi 273 (610)
|+..+- ...++.+.+.|+.++.. ..++.+|.||..|...|... +........|+
T Consensus 72 ----~l~~~~---~~~~~~~~~~i~~l~~~-----------------~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~ii 127 (178)
T 2xgg_A 72 ----DLQSPN---AVDKQLAAHAVLDMPYK-----------------KGSTNTSDGLKACKQILFTGSRPGREHVPKLVI 127 (178)
T ss_dssp ----CTTSGG---GSCHHHHHHHHHHCCCC-----------------CCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEE
T ss_pred ----eCCCCC---ccCHHHHHHHHHhCCCC-----------------CCCccHHHHHHHHHHHhcCcccCCCCCCCEEEE
Confidence 000000 01345566777777532 13567999999999876321 11111235788
Q ss_pred EEecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCCCcChhcc
Q 007267 274 AFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASL 344 (610)
Q Consensus 274 ~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l 344 (610)
+++.|.++.|. -..+.++.+.+.||.|..+.++. .+|-..|
T Consensus 128 llTDG~~~~~~-----------------------------~~~~~~~~l~~~gi~v~~igvG~-~~~~~~l 168 (178)
T 2xgg_A 128 GMTDGESDSDF-----------------------------RTVRAAKEIRELGGIVTVLAVGH-YVAAALV 168 (178)
T ss_dssp EEESSCCCHHH-----------------------------HHSHHHHHHHHTTCEEEEEECC---------
T ss_pred EEcCCCCCCCc-----------------------------cHHHHHHHHHHCCCEEEEEEcCC-cCCHHHH
Confidence 89998876430 12356777888898777666643 3444433
No 32
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.82 E-value=4.3e-05 Score=84.76 Aligned_cols=196 Identities=10% Similarity=0.143 Sum_probs=112.9
Q ss_pred cEEEEEEeCCCCh--------hHHHHHHHHHHHHHHh---CCCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCcc
Q 007267 122 PVYVAAVDLSSSE--------EFLELTRSALQAALEA---VPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDT 190 (610)
Q Consensus 122 p~~vFvID~s~~~--------~~l~~l~~~l~~~l~~---lp~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~ 190 (610)
=..||+||+|.++ ..|+.+++++...++. ..++.+||||+|++.-.--.+... +++
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d-------------~~y 74 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGG-------------DQY 74 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTT-------------TCS
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccc-------------cCC
Confidence 3689999999875 3688899999888883 567889999999875321011000 000
Q ss_pred ccccccccCccCcCccchHh-HHHHHHHHHHh-cCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhcccc-CCCc
Q 007267 191 LSLELEDVMPLSQFLAPVET-FKENITSALET-LRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEY-GNTF 267 (610)
Q Consensus 191 ~~~dl~~~~p~~~~l~~~~e-~~~~i~~~L~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~-~~~~ 267 (610)
+.. ..+.++.. ....+. .|+. |... ....++|.||.+|..+|.... ..+.
T Consensus 75 -----~~i----~vl~~l~~~~~~~l~-~l~~~l~~~-----------------~~~t~i~~al~~A~~~l~~~~~~~k~ 127 (565)
T 1jey_B 75 -----QNI----TVHRHLMLPDFDLLE-DIESKIQPG-----------------SQQADFLDALIVSMDVIQHETIGKKF 127 (565)
T ss_dssp -----TTE----EEEEEEECCCHHHHH-HHHTTCCCC-----------------SSCCCHHHHHHHHHHHHHHHSSSSCC
T ss_pred -----Cce----EEeecCCCCCHHHHH-HHHhhccCC-----------------CccccHHHHHHHHHHHHHHHhhcccc
Confidence 000 00111111 112222 2333 4321 034679999999999997651 1111
Q ss_pred ccceEEEEecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEE-EEEecCCC----c---
Q 007267 268 ALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVD-IFAITNEY----T--- 339 (610)
Q Consensus 268 ~~GkIi~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvD-lf~~~~~~----~--- 339 (610)
..=||++||.|--+.|.. -..++|+.+.+.||.|+ ++.++.+. +
T Consensus 128 ~~krIiLlTDg~~~~~~~----------------------------~~~~~a~~l~~~gI~i~~vig~g~~~~~~~~~~~ 179 (565)
T 1jey_B 128 EKRHIEIFTDLSSRFSKS----------------------------QLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRG 179 (565)
T ss_dssp SEEEEEEECCCCSCCCCT----------------------------THHHHHHHHHHTTEEEEEEESSCCC---------
T ss_pred cccEEEEEeCCCCCCCHH----------------------------HHHHHHHHHHhcCcEEEEEeccCCCcCCcccccc
Confidence 123899999886655311 12468999999999999 66444321 1
Q ss_pred ------------------------ChhcchhhhccCcc-----EEEEeCCCCCCchhHHHHHHhccCcceeeEEEEE
Q 007267 340 ------------------------DLASLKFLSIESGG-----SLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLR 387 (610)
Q Consensus 340 ------------------------~l~~l~~l~~~TGG-----~v~~~~~~~~~~l~~dl~~~l~~~~~~~a~lrvr 387 (610)
+...|..++..||| .++...+.- .....+++...+++.|++.+++-
T Consensus 180 ~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~~~--~~l~~~k~~~~r~~~~~g~l~lg 254 (565)
T 1jey_B 180 DGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESL--RKLCVFKKIERHSIHWPCRLTIG 254 (565)
T ss_dssp -CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHHHT--TSSTTTGGGCCCCCCEEEEEEET
T ss_pred cccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHHHHH--HHhccCcceeecccccccceEEC
Confidence 12237788889999 655543211 11111233344556788888775
No 33
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.72 E-value=6.5e-05 Score=89.33 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=102.6
Q ss_pred EEEEEEeCCCCh--hHHHHHHHHHHHHHHhCCCC-cEEEEEeecceeEEEE-ecCCCcceeeeeeCCCCCcccccccccc
Q 007267 123 VYVAAVDLSSSE--EFLELTRSALQAALEAVPSG-ALFGLATFSHKIGLYD-VQGAIPVVKNVFIPSDTEDTLSLELEDV 198 (610)
Q Consensus 123 ~~vFvID~s~~~--~~l~~l~~~l~~~l~~lp~~-~~VglITf~~~V~~~~-l~~~~~~~~~v~~~~~~~~~~~~dl~~~ 198 (610)
-.+|+||.|.+. ..++.+|+.+.+.++.+.++ .+||||+|++.++..- +.. ..
T Consensus 132 DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt~---------------------~~-- 188 (1095)
T 3k6s_A 132 DIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEE---------------------FR-- 188 (1095)
T ss_dssp EEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSHH---------------------HH--
T ss_pred cEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCcc---------------------cC--
Confidence 489999999985 56888999999999988654 8999999998765421 110 00
Q ss_pred CccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhh-ccccCC-CcccceEEEEe
Q 007267 199 MPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYL-GSEYGN-TFALARVFAFL 276 (610)
Q Consensus 199 ~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL-~~~~~~-~~~~GkIi~F~ 276 (610)
.++.+.++++.|+.. ...+.+|.||..|...+ ....+. ....-.|++++
T Consensus 189 ------------~~~~l~~ai~~i~~~-----------------gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllT 239 (1095)
T 3k6s_A 189 ------------RSSNPLSLLASVHQL-----------------QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVIT 239 (1095)
T ss_dssp ------------SCSCGGGGTTTCCCC-----------------CSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEE
T ss_pred ------------CHHHHHHHHhhhhcc-----------------cCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEe
Confidence 000112233444322 13567999999998754 322111 11123578888
Q ss_pred cCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCC---CcChhcchhhhccCcc
Q 007267 277 SGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNE---YTDLASLKFLSIESGG 353 (610)
Q Consensus 277 ~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~---~~~l~~l~~l~~~TGG 353 (610)
+|.++..+. -+.+.+.++.+.||.|-.+.+..+ .++..+|..+|..++|
T Consensus 240 DG~~~~d~~----------------------------~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs~p~g 291 (1095)
T 3k6s_A 240 DGKKEGDSL----------------------------DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQ 291 (1095)
T ss_dssp SSCCBSCSS----------------------------CHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSCSSTT
T ss_pred CCCcCCCch----------------------------hHHHHHHHHHHCCCEEEEEecccccccccCHHHHHHHHcCCCC
Confidence 887652211 124567778888877666666554 2689999999999887
Q ss_pred -EEEEeCCCC
Q 007267 354 -SLFLYSSTD 362 (610)
Q Consensus 354 -~v~~~~~~~ 362 (610)
.++..++++
T Consensus 292 ~~vf~v~d~~ 301 (1095)
T 3k6s_A 292 EHIFKVEDFD 301 (1095)
T ss_dssp TSCCCBSCSG
T ss_pred ceEEEcCCHH
Confidence 666666664
No 34
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=96.52 E-value=0.0094 Score=50.22 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=48.9
Q ss_pred hcCCCcEEEEecCcEEEEEecCCCCCCCCCCCChhHHHHHHHHHHH-hcCCCCceEEEEeCCCCcHHHHHhhcc
Q 007267 506 ITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMK-QERSITPKLIFIRGGQDDATIFENYLI 578 (610)
Q Consensus 506 ~~s~~~iyllD~g~~~~i~~G~~v~~~~~~~~~~~~~~~~~i~~i~-~~r~~~p~l~~~~~~~~~~~~f~~~Lv 578 (610)
.+..+.+||||+|..+|+|+|...+. .+-...+++.+.|+ .+|.....+.++++|...+.| ...|-
T Consensus 25 sLns~d~FILd~g~~iyvW~G~~s~~------~Ek~~A~~~a~~i~~~er~~~~~i~~v~eG~E~~~F-w~~LG 91 (104)
T 1kcq_A 25 SFNNGDCFILDLGNNIHQWCGSNSNR------YERLKATQVSKGIRDNERSGRARVHVSEEGTEPEAM-LQVLG 91 (104)
T ss_dssp GCCTTSEEEEECSSEEEEEECTTCCH------HHHHHHHHHHHHHHHHTSTTCSEEEEEETTCCCHHH-HHHHC
T ss_pred HcCCCCeEEEeCCCEEEEEeCCCCCH------HHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHH-HHHcC
Confidence 35668899999999999999999883 34444456667776 467666789999999865554 44554
No 35
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=96.39 E-value=0.017 Score=55.95 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=38.2
Q ss_pred CcEEEEEEeCCCCh-hHHHHHHHHHHHHHHhCC---CCcEEEEEeecce
Q 007267 121 RPVYVAAVDLSSSE-EFLELTRSALQAALEAVP---SGALFGLATFSHK 165 (610)
Q Consensus 121 ~p~~vFvID~s~~~-~~l~~l~~~l~~~l~~lp---~~~~VglITf~~~ 165 (610)
+--+||+||+|.+. +.++.+|.++...+..++ .+.+||||+|+..
T Consensus 134 ~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~ 182 (242)
T 3rag_A 134 ALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK 182 (242)
T ss_dssp CEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred CCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 44689999999986 679999999999988765 4689999999874
No 36
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=95.80 E-value=0.013 Score=50.15 Aligned_cols=65 Identities=26% Similarity=0.221 Sum_probs=47.8
Q ss_pred cCCCcEEEEecCcEEEEEecCCCCCCCCCCCChhHHHHHHHHHHHhcCCCCceEEEEeCCC--CcHHHHHhhcc
Q 007267 507 TSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMKQERSITPKLIFIRGGQ--DDATIFENYLI 578 (610)
Q Consensus 507 ~s~~~iyllD~g~~~~i~~G~~v~~~~~~~~~~~~~~~~~i~~i~~~r~~~p~l~~~~~~~--~~~~~f~~~Lv 578 (610)
+..+-+||||+|-.+|+|+|...+. .+-...+++.+.|..+|.....+.++++|. ..+ .|...|-
T Consensus 36 Lns~D~FILd~g~~iyvW~G~~ss~------~Ek~~A~~~a~~i~~er~g~~~i~vv~eg~~~E~~-~Fw~~LG 102 (114)
T 1svq_A 36 LNSGDCFLLDAGLTIYQFNGSKSSP------QEKNKAAEVARAIDAERKGLPKVEVFCETDSDIPA-EFWKLLG 102 (114)
T ss_dssp CCTTSEEEEEETTEEEECCCTTCCH------HHHHHHHHHHHHHHHHHTTCSEEEECCCCTTCCCH-HHHHHHT
T ss_pred cCCCCeEEEecCCEEEEEeCCCCCH------HHHHHHHHHHHHhhhccCCCccEEEEeCCCcCCcH-HHHHHcC
Confidence 4567899999999999999999883 344445666677777776556899999997 433 4444553
No 37
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=95.55 E-value=0.039 Score=63.87 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=79.1
Q ss_pred CcEEEEEEeCCCChh--------HHHHHHHHHHHHHHhCC--CCcEEEEEeecceeEE---EEecCCCcc-eeeeeeCCC
Q 007267 121 RPVYVAAVDLSSSEE--------FLELTRSALQAALEAVP--SGALFGLATFSHKIGL---YDVQGAIPV-VKNVFIPSD 186 (610)
Q Consensus 121 ~p~~vFvID~s~~~~--------~l~~l~~~l~~~l~~lp--~~~~VglITf~~~V~~---~~l~~~~~~-~~~v~~~~~ 186 (610)
+--.|||||+|.++. .++.+|+++...++.|. ++.+||||+|++.+.. ..+...... ..... .+
T Consensus 224 ~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~--n~ 301 (893)
T 2ww8_A 224 PLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRL--ND 301 (893)
T ss_dssp CEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEE--CC
T ss_pred CccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCcccccccccccccccccccccc--cc
Confidence 445999999999861 46778899999888664 4789999999986533 111100000 00000 00
Q ss_pred CCccccccccc--c-CccCcC-ccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccc
Q 007267 187 TEDTLSLELED--V-MPLSQF-LAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSE 262 (610)
Q Consensus 187 ~~~~~~~dl~~--~-~p~~~~-l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~ 262 (610)
...-+.+. + .....| .+|+......|..+...|+...... .+. . ...+..++.+|.||..|..+|...
T Consensus 302 ---~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~--~G~-~--~l~~~GGT~i~~AL~~A~~lL~~~ 373 (893)
T 2ww8_A 302 ---SLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDH--DGN-R--LMYQFGATFTQKALMKADEILTQQ 373 (893)
T ss_dssp ---CTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCS--CTT-S--GGGGGCSCCHHHHHHHHHHHHHHH
T ss_pred ---ccccccccccccccccccccccccCCHHHHHHHHHHHhhhcccc--ccc-c--ccccCCCChHHHHHHHHHHHHHhh
Confidence 00000000 0 000111 2344444445555555554321000 000 0 000125688999999999999742
Q ss_pred cCCCcccceEEEEecCCCCCCC
Q 007267 263 YGNTFALARVFAFLSGPPDHGA 284 (610)
Q Consensus 263 ~~~~~~~GkIi~F~~g~pt~Gp 284 (610)
... .....||+++.|.|+.+.
T Consensus 374 ~~~-~~~kvIILLTDG~pt~~~ 394 (893)
T 2ww8_A 374 ARQ-NSQKVIFHITDGVPTMSY 394 (893)
T ss_dssp SCS-SSEEEEEEEESSCCSEEC
T ss_pred ccc-CCCeEEEEEcCCCCCccc
Confidence 110 012468888899998643
No 38
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=95.48 E-value=0.46 Score=53.35 Aligned_cols=231 Identities=16% Similarity=0.176 Sum_probs=112.8
Q ss_pred cEEEEEEeCCCCh-hHHHHHHHH---HHHHHHhCCCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccccc-c
Q 007267 122 PVYVAAVDLSSSE-EFLELTRSA---LQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL-E 196 (610)
Q Consensus 122 p~~vFvID~s~~~-~~l~~l~~~---l~~~l~~lp~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl-~ 196 (610)
-=.+|++|+|.++ ..++.||+. |.+.|..+..+.|+||.+|-+..-. . ++.. ....+ +
T Consensus 112 vDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~----P------~~~~-------~p~~~~~ 174 (690)
T 3fcs_B 112 VDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVS----P------YMYI-------SPPEALE 174 (690)
T ss_dssp EEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSST----T------TSCC-------CSTTTTT
T ss_pred ccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccC----C------cccc-------Chhhhcc
Confidence 3488999999997 456655544 4445556678999999999764321 0 0000 00111 0
Q ss_pred c--------cCc-cC-cCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHH--HhhccccC
Q 007267 197 D--------VMP-LS-QFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLF--NYLGSEYG 264 (610)
Q Consensus 197 ~--------~~p-~~-~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~--~lL~~~~~ 264 (610)
+ -.| .. +-..++.+....+.+.+..+.... + .| .|...+-+.++||+ .-+.=...
T Consensus 175 ~pc~~~~~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~isg-n------~D------~PE~g~dAl~qa~~c~~~igWr~~ 241 (690)
T 3fcs_B 175 NPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSR-N------RD------APEGGFDAIMQATVCDEKIGWRND 241 (690)
T ss_dssp CTTSSSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCCCCC-C------SS------SSBCHHHHHHHHHHCHHHHTCCSS
T ss_pred CCCcCCCCCCCCCccceeecccCCCHHHHHHHhhceeccC-C------CC------CCchHHHHHHHHhhcccccCCCCC
Confidence 0 011 11 113466666566666776654321 1 11 14444555555553 22321111
Q ss_pred CCcccceEEEEecCCCCC--CCcccccccCcCcccCCCcchhhccCCcchH----HHHHHHHHHHHcCcEEEEEEecCCC
Q 007267 265 NTFALARVFAFLSGPPDH--GAGQLDTRRYGEQYASKGEDADRALLPEQTP----FYKDLAAVAVQAGVCVDIFAITNEY 338 (610)
Q Consensus 265 ~~~~~GkIi~F~~g~pt~--GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~----fY~~la~~~~~~gisvDlf~~~~~~ 338 (610)
.-|+++|++-.+-. |-|++...-..+...-+- +. ..++..+.. --.+|+.++.+++|. =||+.....
T Consensus 242 ----a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl-~~-~~~y~~s~~~DypSi~ql~~~l~~~~i~-~ifavt~~~ 314 (690)
T 3fcs_B 242 ----ASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHV-GS-DNHYSASTTMDYPSLGLMTEKLSQKNIN-LIFAVTENV 314 (690)
T ss_dssp ----SEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCB-CT-TCBBGGGGTSCCCCHHHHHHHHHHTTCE-EEEEEEGGG
T ss_pred ----ceEEEEEECCCccccCCCccccceecCCCcceee-cC-CCccccccccCCCCHHHHHHHHHHcCCe-EEEEEeCCc
Confidence 25899988877754 667654322111111000 00 001111111 245788888888884 367776665
Q ss_pred cChhcchhhh-ccCccEEEEeCCCCCCch---hHHHHHHhccCcceeeEEEEEc-cCCeeeee
Q 007267 339 TDLASLKFLS-IESGGSLFLYSSTDDSTL---PQDIYRMLSRPYAFNCIMRLRT-SSEFKPGH 396 (610)
Q Consensus 339 ~~l~~l~~l~-~~TGG~v~~~~~~~~~~l---~~dl~~~l~~~~~~~a~lrvr~-S~gl~v~~ 396 (610)
.+++ ..|+ ..+|+.+-.... |...+ ..+-++.+. -..+|+... ..+++|+.
T Consensus 315 ~~~y--~~l~~~i~~s~v~~l~~-dSsni~~li~~~y~~i~----s~v~l~~~~~p~~~~v~~ 370 (690)
T 3fcs_B 315 VNLY--QNYSELIPGTTVGVLSM-DSSNVLQLIVDAYGKIR----SKVELEVRDLPEELSLSF 370 (690)
T ss_dssp HHHH--HHHHHHSTTCEEEEECT-TCTTHHHHHHHHHHHHT----TCEEEEEESCCTTEEEEE
T ss_pred hhhH--HHHHhhcCCceeeeecc-ccHHHHHHHHHHHHhhh----cceeeeccCCCCcceEEE
Confidence 5544 3344 334555555543 33333 333333333 234455443 45666554
No 39
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=95.21 E-value=1.9 Score=45.77 Aligned_cols=230 Identities=17% Similarity=0.171 Sum_probs=114.9
Q ss_pred CcEEEEEEeCCCCh-hHHHHHHH---HHHHHHHhCCCCcEEEEEeecceeE--EEEecCCCcceeeeeeCCCCCcccccc
Q 007267 121 RPVYVAAVDLSSSE-EFLELTRS---ALQAALEAVPSGALFGLATFSHKIG--LYDVQGAIPVVKNVFIPSDTEDTLSLE 194 (610)
Q Consensus 121 ~p~~vFvID~s~~~-~~l~~l~~---~l~~~l~~lp~~~~VglITf~~~V~--~~~l~~~~~~~~~v~~~~~~~~~~~~d 194 (610)
|-=.+|++|+|.++ ..++.+|+ .|.+.|..+-.+.|+||.+|-+..- +.+.. ...
T Consensus 111 pvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~-------------------p~~ 171 (472)
T 3t3p_B 111 PVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYIS-------------------PPE 171 (472)
T ss_dssp CEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCC-------------------SHH
T ss_pred CceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCC-------------------hhh
Confidence 33488999999997 45555544 4444555667789999999955321 10000 000
Q ss_pred -cccc--------C-ccC-cCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHH--Hhhcc
Q 007267 195 -LEDV--------M-PLS-QFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLF--NYLGS 261 (610)
Q Consensus 195 -l~~~--------~-p~~-~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~--~lL~~ 261 (610)
+.++ . |.. +...++.+....+.+.+..+.-.. +. | .|...+.+-+++|. .-+.=
T Consensus 172 ~l~nPc~~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSG-n~------D------~PEgg~dAl~qaavC~~~igW 238 (472)
T 3t3p_B 172 ALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSR-NR------D------APEGGFDAIMQATVCDEKIGW 238 (472)
T ss_dssp HHHCTTTTTTSCCCCCCSEEEEEEEESCHHHHHHHHHHCCCCC-CS------S------SSBCHHHHHHHHHHCHHHHTC
T ss_pred hhcCCCcccccCCCCCcceeEeeccCCCHHHHHHHHhhccccC-CC------C------CCchHHHHHHHHhcchhhcCC
Confidence 1111 0 111 123566666667777787765431 11 1 14445655556654 22221
Q ss_pred ccCCCcccceEEEEecCCCC--CCCcccccccCcCcccCCCcchhhccCCcc----hHHHHHHHHHHHHcCcEEEEEEec
Q 007267 262 EYGNTFALARVFAFLSGPPD--HGAGQLDTRRYGEQYASKGEDADRALLPEQ----TPFYKDLAAVAVQAGVCVDIFAIT 335 (610)
Q Consensus 262 ~~~~~~~~GkIi~F~~g~pt--~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~----~~fY~~la~~~~~~gisvDlf~~~ 335 (610)
.. ..-|+++|++-.+- .|-|++...-..+..+.|- +.. ..+..+ ..-..+|+.++.+++|.+ ||+..
T Consensus 239 R~----~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL-~~~-~~Y~~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt 311 (472)
T 3t3p_B 239 RN----DASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHV-GSD-NHYSASTTMDYPSLGLMTEKLSQKNINL-IFAVT 311 (472)
T ss_dssp CS----SSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCB-CTT-CBBTTTTTSCCCCHHHHHHHHHHTTCEE-EEEEC
T ss_pred CC----CceEEEEEECCCCcCcCCCccccceecCCCCceEE-CCC-CcccccccCCCCCHHHHHHHHHhcCccE-EEEEe
Confidence 11 13589998887664 4777775432222111110 000 011111 122457788888888644 88887
Q ss_pred CCCcChhcchhhhccC-ccEEEEeCCCCCCc---hhHHHHHHhccCcceeeEEEEEc-cCCeeeee
Q 007267 336 NEYTDLASLKFLSIES-GGSLFLYSSTDDST---LPQDIYRMLSRPYAFNCIMRLRT-SSEFKPGH 396 (610)
Q Consensus 336 ~~~~~l~~l~~l~~~T-GG~v~~~~~~~~~~---l~~dl~~~l~~~~~~~a~lrvr~-S~gl~v~~ 396 (610)
....+++ ..|+..- |+.+-... -|... +..+-++.+.. ...|+... ..+++|+.
T Consensus 312 ~~~~~~Y--~~L~~~ip~s~vg~L~-~dSsNiv~LI~~aY~~i~s----~V~l~~~~~p~~l~v~y 370 (472)
T 3t3p_B 312 ENVVNLY--QNYSELIPGTTVGVLS-MDSSNVLQLIVDAYGKIRS----KVELEVRDLPEELSLSF 370 (472)
T ss_dssp GGGHHHH--HHHHHTSTTCEEEECC-TTSTTHHHHHHHHHHHHTT----CEEEEEESCCTTEEEEE
T ss_pred ccchhHH--HHHHHhCCCceeeecc-ccchhHHHHHHHHHHHhhe----EEEEeeCCCCCcEEEEE
Confidence 7655543 3444443 33333333 23333 33444444433 34454443 44666553
No 40
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=95.02 E-value=0.062 Score=58.91 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=60.0
Q ss_pred CCcEEEEEEeCCCChhH------HHHHHHHHHHHHHhCCCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccccc
Q 007267 120 ARPVYVAAVDLSSSEEF------LELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSL 193 (610)
Q Consensus 120 ~~p~~vFvID~s~~~~~------l~~l~~~l~~~l~~lp~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~ 193 (610)
.+..++|+||+|.++.. ++....++.-++..+.++.+||||+|++.+.. +
T Consensus 367 ~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~~~~--~---------------------- 422 (538)
T 1yvr_A 367 TGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLP--C---------------------- 422 (538)
T ss_dssp CCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEEC--C----------------------
T ss_pred CCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCCceE--c----------------------
Confidence 44578999999998631 33322222223333445678999999863221 0
Q ss_pred cccccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEE
Q 007267 194 ELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVF 273 (610)
Q Consensus 194 dl~~~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkIi 273 (610)
|+. .... +..+++.|.... .+++.+|.||..|...-.. ...|+
T Consensus 423 ------~~t-------~~~~-l~~~l~~l~~~~----------------~GgT~i~~aL~~a~~~~~~-------~~~iI 465 (538)
T 1yvr_A 423 ------PIT-------VNML-LHEVVEKMSDIT----------------MGSTDCALPMLWAQKTNTA-------ADIFI 465 (538)
T ss_dssp ------SCC-------TTSC-HHHHHHHHTTCC----------------CSCCCTTHHHHHHHHTTCC-------CSEEE
T ss_pred ------CCC-------Cccc-HHHHHHHHhcCC----------------CCCCcHHHHHHHHHhccCC-------CCEEE
Confidence 100 0001 445566665321 1356688999988876221 36899
Q ss_pred EEecCCCCCC
Q 007267 274 AFLSGPPDHG 283 (610)
Q Consensus 274 ~F~~g~pt~G 283 (610)
++++|..+.|
T Consensus 466 liTDg~~~~g 475 (538)
T 1yvr_A 466 VFTDCETNVE 475 (538)
T ss_dssp EEECCCCCSS
T ss_pred EEcCCCCCCC
Confidence 9999987664
No 41
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=94.86 E-value=0.21 Score=55.48 Aligned_cols=155 Identities=11% Similarity=0.166 Sum_probs=86.6
Q ss_pred EEEEEEeCCCCh---------hHHHHHHHHHHHHHHh---CCCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCcc
Q 007267 123 VYVAAVDLSSSE---------EFLELTRSALQAALEA---VPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDT 190 (610)
Q Consensus 123 ~~vFvID~s~~~---------~~l~~l~~~l~~~l~~---lp~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~ 190 (610)
..||+||+|.++ ..|+.++..+...++. -.++.+||||.|++.-+ .+.... .++.
T Consensus 37 ~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t----~n~l~~-d~i~-------- 103 (609)
T 1jey_A 37 SLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKD----KNSVNF-KNIY-------- 103 (609)
T ss_dssp EEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSC----BSTTCC-TTEE--------
T ss_pred EEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCC----CCcCCC-CCeE--------
Confidence 689999999764 2688888888887764 13567999999988642 111100 0111
Q ss_pred ccccccccCccCcCccchHhHHHHHHHHHH-----hcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCC
Q 007267 191 LSLELEDVMPLSQFLAPVETFKENITSALE-----TLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGN 265 (610)
Q Consensus 191 ~~~dl~~~~p~~~~l~~~~e~~~~i~~~L~-----~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~ 265 (610)
+..+|+.+ + .+....|.++++ .++...+. ..+.++|.||.+|..++.....
T Consensus 104 v~~~L~~~---~------~~~ik~l~~l~~~~~~~~~~~~~g~--------------~~~t~l~daL~~a~~~f~~~~~- 159 (609)
T 1jey_A 104 VLQELDNP---G------AKRILELDQFKGQQGQKRFQDMMGH--------------GSDYSLSEVLWVCANLFSDVQF- 159 (609)
T ss_dssp EEEEEECC---C------HHHHHHHHTTSHHHHHHHHHHHHCC--------------SCCCCHHHHHHHHHHHHHTCSS-
T ss_pred EEecCCCC---C------HHHHHHHHHHhhcccchhhhhhcCC--------------CCCCCHHHHHHHHHHHHHhhch-
Confidence 11122110 0 001011111111 00000000 0346799999999999986421
Q ss_pred CcccceEEEEecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecCC
Q 007267 266 TFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNE 337 (610)
Q Consensus 266 ~~~~GkIi~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~~ 337 (610)
+...=+|++||.|--+.|.. . ....-....|+.+.+.||.|.+|.++.+
T Consensus 160 k~~~k~IiL~TDg~~p~~~~--~---------------------~~~~~~~~~a~~l~~~gI~i~~igig~~ 208 (609)
T 1jey_A 160 KMSHKRIMLFTNEDNPHGND--S---------------------AKASRARTKAGDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp CEEEEEEEEEESCSCTTTTC--H---------------------HHHHHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred hhcCCEEEEEcCCCCCCCCc--h---------------------HHHHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 11124899999986554310 0 0011225789999999999999988654
No 42
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=94.04 E-value=3.5 Score=43.41 Aligned_cols=198 Identities=17% Similarity=0.161 Sum_probs=100.0
Q ss_pred cE-EEEEEeCCCCh-hHHHHHH---HHHHHHHHhCCCCcEEEEEeeccee-EEEEecCCCcceeeeeeCCCCCcccc--c
Q 007267 122 PV-YVAAVDLSSSE-EFLELTR---SALQAALEAVPSGALFGLATFSHKI-GLYDVQGAIPVVKNVFIPSDTEDTLS--L 193 (610)
Q Consensus 122 p~-~vFvID~s~~~-~~l~~l~---~~l~~~l~~lp~~~~VglITf~~~V-~~~~l~~~~~~~~~v~~~~~~~~~~~--~ 193 (610)
|+ ..|++|+|+++ ..++.|| ..|.+.|..+-.+.|+||..|-+.. .=|.-..+. ..+.... .
T Consensus 122 PVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~----------~~~nPC~~~~ 191 (454)
T 3vi3_B 122 PIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPA----------KLRNPCTSEQ 191 (454)
T ss_dssp CEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTT----------TTTCCSCSSS
T ss_pred ceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChH----------HhcCCCcCcc
Confidence 44 78999999997 4455554 4455555666778999999995532 100000000 0000000 0
Q ss_pred cccccCccC-cCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceE
Q 007267 194 ELEDVMPLS-QFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARV 272 (610)
Q Consensus 194 dl~~~~p~~-~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~GkI 272 (610)
..+. |.. +-..++.+....+.+.+..+.-.... | .|...+-+-+++|.. -+..|=. . .-|+
T Consensus 192 ~c~~--~f~fr~~l~LT~d~~~F~~~V~~~~isGn~-------D------~PEgg~DAl~Qaavc-~~~igWR-~-a~rl 253 (454)
T 3vi3_B 192 NCTT--PFSYKNVLSLTNKGEVFNELVGKQRISGNL-------D------SPEGGFDAIMQVAVC-GSLIGWR-N-VTRL 253 (454)
T ss_dssp CCCC--CCSEEEEEEEESCHHHHHHHHTTCCCCCCS-------S------SSBCHHHHHHHHHHC-HHHHTCC-S-SEEE
T ss_pred CCCC--CcceeeeeecCCCHHHHHHHHhhccccCCC-------c------CCchhHHHHHHHhcc-ccccCCc-c-ceEE
Confidence 0000 111 12456666666777777776443111 1 144556555666542 1111110 1 2589
Q ss_pred EEEecCCCC--CCCcccccccCcCcccCCCcchhhccCCcc----hHHHHHHHHHHHHcCcEEEEEEecCCCcChhcchh
Q 007267 273 FAFLSGPPD--HGAGQLDTRRYGEQYASKGEDADRALLPEQ----TPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKF 346 (610)
Q Consensus 273 i~F~~g~pt--~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~----~~fY~~la~~~~~~gisvDlf~~~~~~~~l~~l~~ 346 (610)
++|++-.+- .|-|++...-..+..+.|- + ...+..+ ..-..+|+.++.+++|-+ ||+.......++ ..
T Consensus 254 lV~~TDa~fH~agDgkL~GIv~PNDg~CHL-~--~~~Yt~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~Y--~~ 327 (454)
T 3vi3_B 254 LVFSTDAGFHFAGDGKLGGIVLPNDGQCHL-E--NNMYTMSHYYDYPSIAHLVQKLSENNIQT-IFAVTEEFQPVY--KE 327 (454)
T ss_dssp EEEEESSCBCCTTTTGGGTCCSCCCCCCCE-E--TTEECCTTTSCCCCHHHHHHHHHHTTEEE-EEEEEGGGHHHH--HH
T ss_pred EEEECCCCcCcCCCccccceecCCCCccEe-C--CCcccccccCCCCCHHHHHHHHHhcCCcE-EEEEcCccchHH--HH
Confidence 998887664 4888875432222211111 1 1111111 122567888888888754 888877766554 34
Q ss_pred hhccCcc
Q 007267 347 LSIESGG 353 (610)
Q Consensus 347 l~~~TGG 353 (610)
|+..-+|
T Consensus 328 L~~~ip~ 334 (454)
T 3vi3_B 328 LKNLIPK 334 (454)
T ss_dssp HHHHSTT
T ss_pred HHHhCCC
Confidence 4444333
No 43
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=92.69 E-value=0.13 Score=53.02 Aligned_cols=65 Identities=12% Similarity=0.312 Sum_probs=39.2
Q ss_pred cCCCcEEEEecCcEEEEEecCCCCCCCCCCCChhHHHHHHHHHHHh---cCCCCceEEEEeCCCCcHHHHHhhc
Q 007267 507 TSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMKQ---ERSITPKLIFIRGGQDDATIFENYL 577 (610)
Q Consensus 507 ~s~~~iyllD~g~~~~i~~G~~v~~~~~~~~~~~~~~~~~i~~i~~---~r~~~p~l~~~~~~~~~~~~f~~~L 577 (610)
+..+.+||||+|..|+||+|..++++ ....++....+-++. .|++..++.++.||... ..|+++.
T Consensus 255 L~~~dv~iLD~g~~IfVW~G~~as~~-----er~~A~~~A~~y~~~~~~~r~~~t~i~~V~eG~Ep-~~Fk~~F 322 (344)
T 2fh1_A 255 LATDDVMLLDTWDQVFVWVGKDSQEE-----EKTEALTSAKRYIETDPANRDRRTPITVVKQGFEP-PSFVGWF 322 (344)
T ss_dssp SCTTSEEEEECSSCEEEEECTTCCHH-----HHHHHHHHHHHHHHTC-------CCEEEEETTCCC-HHHHTTS
T ss_pred CCCCCEEEEeCCCEEEEEECCCCCHH-----HHHHHHHHHHHHHHhCccCCCCCCcEEEEcCCCCC-HHHHHHH
Confidence 46689999999999999999998731 122223322233332 46555568888888654 3455444
No 44
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=92.43 E-value=13 Score=39.60 Aligned_cols=262 Identities=18% Similarity=0.161 Sum_probs=125.7
Q ss_pred EEEEEEeCCCCh-hHHHHHHH---HHHHHHHhCCCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCcccccccccc
Q 007267 123 VYVAAVDLSSSE-EFLELTRS---ALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDV 198 (610)
Q Consensus 123 ~~vFvID~s~~~-~~l~~l~~---~l~~~l~~lp~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~~~ 198 (610)
-.+|++|+|.++ ..++.+|+ .|.+.|..+..+.|+||.+|-+..-+ .... . ....+..+
T Consensus 134 DLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~-P~~~--~--------------~p~~l~~P 196 (503)
T 3v4v_B 134 DLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVL-PFVS--T--------------VPSKLRHP 196 (503)
T ss_dssp EEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSST-TTSC--C--------------CHHHHHCC
T ss_pred eEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccC-Cccc--C--------------CHHHhcCC
Confidence 488999999997 45555554 44455566677899999999553210 0000 0 00111111
Q ss_pred --------C-ccC-cCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHH--HhhccccCCC
Q 007267 199 --------M-PLS-QFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLF--NYLGSEYGNT 266 (610)
Q Consensus 199 --------~-p~~-~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~--~lL~~~~~~~ 266 (610)
. |.. +-..++.+....+.+.+....-.. + .| .|...+.+-+++|. +-+.=. .
T Consensus 197 C~~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSG-n------lD------~PEggfDAlmQaavC~~~IgWR-~-- 260 (503)
T 3v4v_B 197 CPTRLERCQSPFSFHHVLSLTGDAQAFEREVGRQSVSG-N------LD------SPEGGFDAILQAALCQEQIGWR-N-- 260 (503)
T ss_dssp SSCSSSCCCCCCSEEEEEEEESCSHHHHHHHTTCCCCC-C------SS------SSBCHHHHHHHHHHCHHHHTCC-S--
T ss_pred CcCCCCCCCCCcceEEEEEecCCHHHHHHHHhhcCccC-C------CC------CCchHHHHHHHHhhcccccCCC-c--
Confidence 0 111 113455555555666676554321 1 11 14455655566664 222211 1
Q ss_pred cccceEEEEecCCCC--CCCcccccccCcCcccCCCcchhhccCCcc----hHHHHHHHHHHHHcCcEEEEEEecCCCcC
Q 007267 267 FALARVFAFLSGPPD--HGAGQLDTRRYGEQYASKGEDADRALLPEQ----TPFYKDLAAVAVQAGVCVDIFAITNEYTD 340 (610)
Q Consensus 267 ~~~GkIi~F~~g~pt--~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~----~~fY~~la~~~~~~gisvDlf~~~~~~~~ 340 (610)
..|+++|++-.+- .|-|++...-..+..+.|- +. ..++..+ ..-..+|+.++.+++|. =||+......+
T Consensus 261 --a~rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL-~~-~~~Yt~s~~~DYPSv~ql~~kL~ennI~-~IFAVt~~~~~ 335 (503)
T 3v4v_B 261 --VSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHL-DS-NGLYSRSTEFDYPSVGQVAQALSAANIQ-PIFAVTSAALP 335 (503)
T ss_dssp --SEEEEEEEESSCBCCTTGGGTTTCCSCCCSSCCB-CT-TSBBGGGGGSCCCCHHHHHHHHHHHTEE-EEEEECSSSHH
T ss_pred --ceEEEEEECCCCcCcCCCccccceecCCCCCeEE-CC-CCccccccccCCCCHHHHHHHHHhcCCe-EEEEEcccchh
Confidence 2589998886664 4777764432222111110 00 0111111 11245677888888874 47888877665
Q ss_pred hhcchhhhccCccE-EEEeCCCCCCch---hHHHHHHhccCcceeeEEEEEc-cCCeeeeeeeeccccCCCCC----cce
Q 007267 341 LASLKFLSIESGGS-LFLYSSTDDSTL---PQDIYRMLSRPYAFNCIMRLRT-SSEFKPGHSYGHFFPDPQYE----NVQ 411 (610)
Q Consensus 341 l~~l~~l~~~TGG~-v~~~~~~~~~~l---~~dl~~~l~~~~~~~a~lrvr~-S~gl~v~~~~G~~~~~~~~~----~~~ 411 (610)
++ ..|+..-.|. +-... -|...+ ..+-++.+.. ...|+... ..+++|+..- .|....+.. ..-
T Consensus 336 ~Y--~~L~~~ip~s~vg~Ls-~dSsNiv~LI~~aY~~i~S----~V~l~~~~~p~~l~v~y~s-~C~~~~~~~~~~~~~~ 407 (503)
T 3v4v_B 336 VY--QELSKLIPKSAVGELS-EDSSNVVQLIMDAYNSLSS----TVTLEHSSLPPGVHISYES-QCEGPEKREGKAEDRG 407 (503)
T ss_dssp HH--HHHHTTSTTCEEEECC-TTSCTHHHHHHHHHHHHHT----CEEEECCCCCTTEEEEBCE-ECSSSCCCCCCCBSSE
T ss_pred HH--HHHHHhCCCceeeEcc-ccchhHHHHHHHHHHHhhe----EEEEecCCCCCceEEEEEE-ecCCCCccCcccccCC
Confidence 54 4455444443 33333 343333 3333344432 23444433 4577766442 221110000 011
Q ss_pred eeeecCCCccEEEEEEEec
Q 007267 412 HIICCDSYATYAYDFDFAN 430 (610)
Q Consensus 412 ~i~~~~~~~t~a~~fe~~~ 430 (610)
...++...+++.|.+++..
T Consensus 408 ~C~~v~ig~~v~F~v~v~~ 426 (503)
T 3v4v_B 408 QCNHVRINQTVTFWVSLQA 426 (503)
T ss_dssp EECSCCTTCEEEEEEEEEE
T ss_pred cccCcccCCEEEEEEEEEe
Confidence 2344556667666666654
No 45
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=92.08 E-value=0.2 Score=52.56 Aligned_cols=65 Identities=17% Similarity=0.393 Sum_probs=41.8
Q ss_pred cCCCcEEEEecCcEEEEEecCCCCCCCCCCCChhHHHHHHHHHHH---hcCCCCceEEEEeCCCCcHHHHHhhc
Q 007267 507 TSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMK---QERSITPKLIFIRGGQDDATIFENYL 577 (610)
Q Consensus 507 ~s~~~iyllD~g~~~~i~~G~~v~~~~~~~~~~~~~~~~~i~~i~---~~r~~~p~l~~~~~~~~~~~~f~~~L 577 (610)
+..+.+||||+|..||||+|..+++ .+.-.++....+-|+ ..|.+.-++.++.||... ..|+++.
T Consensus 308 L~~~dv~ILD~g~~IfVW~G~~as~-----~Er~~Al~~A~~yi~~~~~~r~~~tpi~~V~eG~Ep-~~Fk~~F 375 (398)
T 3fg7_A 308 LEEDDVFLLDVWDQVFFWIGKHANE-----EEKKAAATTAQEYLKTHPSGRDPETPIIVVKQGHEP-PTFTGWF 375 (398)
T ss_dssp CCTTSEEEEECSSCEEEEECTTCCH-----HHHHHHHHHHHHHHHHSSSSCCTTCCEEEEETTCCC-HHHHTTS
T ss_pred CCCCCEEEEeCCCEEEEEECCCCCH-----HHHHHHHHHHHHHHHhCcccCCCCCCEEEEcCCCCC-HHHHHhh
Confidence 4678999999999999999999873 122233333333343 345444457788888653 4555554
No 46
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=91.61 E-value=0.71 Score=50.38 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=58.3
Q ss_pred CCcEEEEEEeCCCChhH--------HHHHHHHHHHHHHhCCCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCccc
Q 007267 120 ARPVYVAAVDLSSSEEF--------LELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTL 191 (610)
Q Consensus 120 ~~p~~vFvID~s~~~~~--------l~~l~~~l~~~l~~lp~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~ 191 (610)
..-.++++||+|.+... +..+..+..-++-.+..+.+||||+|++.+....+..
T Consensus 361 ~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~~~~~~~~------------------ 422 (535)
T 2nvo_A 361 ANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFRPLGITP------------------ 422 (535)
T ss_dssp CCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSEEECCCCT------------------
T ss_pred CCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcceEcCCCc------------------
Confidence 34578889999998632 2222222222222334556999999987442211100
Q ss_pred cccccccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccce
Q 007267 192 SLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALAR 271 (610)
Q Consensus 192 ~~dl~~~~p~~~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~Gk 271 (610)
++.+.++|+.|.... . +++.++.||..|...... ...
T Consensus 423 --------------------~~~l~~~l~~l~~~~-~---------------ggTdi~~~l~~a~~~~~~-------~~~ 459 (535)
T 2nvo_A 423 --------------------RDTLESAMQKAQSVS-F---------------GGTDCAQPILWAAQERLD-------VDT 459 (535)
T ss_dssp --------------------TCCHHHHHHHTCCSS-B---------------CCCCTTHHHHHHHHTTCC-------CSE
T ss_pred --------------------chhHHHHHHHHhhCC-C---------------CCccHHHHHHHHHHhcCC-------CCE
Confidence 011345666665431 1 345688888777554322 368
Q ss_pred EEEEecCCCCCC
Q 007267 272 VFAFLSGPPDHG 283 (610)
Q Consensus 272 Ii~F~~g~pt~G 283 (610)
|++++++.-+.|
T Consensus 460 vIliTD~~~~~g 471 (535)
T 2nvo_A 460 FVVYTDNETWAG 471 (535)
T ss_dssp EEEEESSCCCCC
T ss_pred EEEEeCCCccCC
Confidence 999999977665
No 47
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=91.33 E-value=0.1 Score=54.19 Aligned_cols=64 Identities=17% Similarity=0.400 Sum_probs=35.9
Q ss_pred cCCCcEEEEecCcEEEEEecCCCCCCCCCCCChhHHHHHH---HHHHHhcCCCCceEEEEeCCCCcHHHHHhh
Q 007267 507 TSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTT---INKMKQERSITPKLIFIRGGQDDATIFENY 576 (610)
Q Consensus 507 ~s~~~iyllD~g~~~~i~~G~~v~~~~~~~~~~~~~~~~~---i~~i~~~r~~~p~l~~~~~~~~~~~~f~~~ 576 (610)
+..+.+||||+|..||||+|..++. .+.-.+++.. |+.....|++..++.++.||.... .|+++
T Consensus 296 L~~~dv~ILD~~~~IfVW~G~~as~-----~Er~~A~~~A~~yi~~~~~~r~~~t~i~~v~eG~Ep~-~Fk~~ 362 (371)
T 3fg6_A 296 LAEDDVMLLDAWEQIFIWIGKDANE-----VEKKESLKSAKMYLETDPSGRDKRTPIVIIKQGHEPP-TFTGW 362 (371)
T ss_dssp SCTTSEEEEECSSCEEEEECTTCCH-----HHHHHHHHHHTTCC----------CCEEEEETTCCCH-HHHTT
T ss_pred CCCCCEEEEeCCCEEEEEECCCCCH-----HHHHHHHHHHHHHHHhCccCCCCCCCEEEecCCCCCH-HHHhh
Confidence 4668999999999999999999773 1112222222 233223465555688888886543 44433
No 48
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=90.68 E-value=0.35 Score=49.77 Aligned_cols=57 Identities=11% Similarity=0.157 Sum_probs=38.8
Q ss_pred cCCCcEEEEecC--cEEEEEecCCCCCCCCCCCChhHHHHHHHHH-HH-hcCCCCceEEEEeCCCCc
Q 007267 507 TSGSPIFLLDAF--TTIIVFYSSTADPTLPFPPPQDCLLRTTINK-MK-QERSITPKLIFIRGGQDD 569 (610)
Q Consensus 507 ~s~~~iyllD~g--~~~~i~~G~~v~~~~~~~~~~~~~~~~~i~~-i~-~~r~~~p~l~~~~~~~~~ 569 (610)
+..+.+||||+| ..|+||+|..+++ .+-..-.++.+. +. ..|++..++.++.+|...
T Consensus 276 L~s~dv~ILD~g~~~~IyVW~G~~a~~------~er~~A~~~A~~y~~~~~rp~~~~i~~v~eG~Ep 336 (347)
T 1j72_A 276 LISDDCFVLDNGLCGKIYIWKGRKANE------KERQAALQVAEGFISRMQYAPNTQVEILPQGRES 336 (347)
T ss_dssp CCTTSEEEEECGGGSEEEEEECTTCCH------HHHHHHHHHHHHHHHHHTCCTTCEEEEEETTCCC
T ss_pred cCCCCEEEEecCCCcEEEEEeCCCCCH------HHHHHHHHHHHHHHHhcCCCCCCeEEEEcCCCCC
Confidence 467899999999 9999999999873 122222222232 33 356566679899998743
No 49
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=88.23 E-value=1.7 Score=48.73 Aligned_cols=198 Identities=17% Similarity=0.145 Sum_probs=97.8
Q ss_pred CcEEEEEEeCCCCh-hHHHHHH---HHHHHHHHhCCCCcEEEEEeecceeEEEEecCCCcceeeeeeCCCCCcccccccc
Q 007267 121 RPVYVAAVDLSSSE-EFLELTR---SALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELE 196 (610)
Q Consensus 121 ~p~~vFvID~s~~~-~~l~~l~---~~l~~~l~~lp~~~~VglITf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~ 196 (610)
|-=.+|++|+|.++ ..++.|| +.|.+.|..+.++.|+||.+|-+..-. . ++.. ....++
T Consensus 104 pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~-P---------~~~~-------~p~~~~ 166 (687)
T 3k6s_B 104 PIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVL-P---------FVNT-------HPDKLR 166 (687)
T ss_dssp CCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSST-T---------SSCC-------SSTTTT
T ss_pred ceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccC-C---------cccc-------Cchhcc
Confidence 33488999999997 4455554 445556667788999999999664311 0 0000 001111
Q ss_pred cc--------C-ccC-cCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHH--HhhccccC
Q 007267 197 DV--------M-PLS-QFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLF--NYLGSEYG 264 (610)
Q Consensus 197 ~~--------~-p~~-~~l~~~~e~~~~i~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~--~lL~~~~~ 264 (610)
++ . |.. +...++.+....+.+.+..+.... + .| .|...+-+.++||+ .-+.=..
T Consensus 167 ~Pc~~~~~~c~~~f~f~~~l~lt~~~~~F~~~v~~~~isg-n------~D------~PE~g~dAl~qa~vc~~~igWr~- 232 (687)
T 3k6s_B 167 NPCPNKEKECQPPFAFRHVLKLTNNSNQFQTEVGKQLISG-N------LD------APEGGLDAMMQVAACPEEIGWRN- 232 (687)
T ss_dssp CCCCSCCCCCCCCCSCEEEEEEESCSHHHHHHHHTSCCCC-C------SS------SSCCHHHHHHHHTTCHHHHCCCS-
T ss_pred CCCCCCCCCcCCcccceeecccCCCHHHHHHHHhhccccC-C------CC------CCchHHHHHHHHhhcccccCCcc-
Confidence 11 1 111 113456665566677777665321 1 11 14444544455552 2222111
Q ss_pred CCcccceEEEEecCCCCC--CCcccccccCcCcccCCCcchhhccCCcchH----HHHHHHHHHHHcCcEEEEEEecCCC
Q 007267 265 NTFALARVFAFLSGPPDH--GAGQLDTRRYGEQYASKGEDADRALLPEQTP----FYKDLAAVAVQAGVCVDIFAITNEY 338 (610)
Q Consensus 265 ~~~~~GkIi~F~~g~pt~--GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~----fY~~la~~~~~~gisvDlf~~~~~~ 338 (610)
.-|++||++-.+-. |-|++...-..+...-|-. ...+..+.. --.+|+.++.+++|.+ ||+.....
T Consensus 233 ----a~rllV~~TDa~~H~agDg~l~gi~~pndg~Chl~---~~~y~~s~~~DyPS~~ql~~~l~~~~I~~-ifavt~~~ 304 (687)
T 3k6s_B 233 ----VTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLE---DNLYKRSNEFDYPSVGQLAHKLAENNIQP-IFAVTSRM 304 (687)
T ss_dssp ----SCCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCCS---SSBCSSGGGSCCCCGGGHHHHHHHTTCBC-CEEECGGG
T ss_pred ----ceEEEEEECCCccccCCCccccceecCCCCccccC---CCccccccccCCCCHHHHHHHHHHcCCeE-EEEEeccc
Confidence 25899988877654 6676543211111111100 011111111 1245777777888743 66666555
Q ss_pred cChhcchhhhc-cCccEEEEeC
Q 007267 339 TDLASLKFLSI-ESGGSLFLYS 359 (610)
Q Consensus 339 ~~l~~l~~l~~-~TGG~v~~~~ 359 (610)
.+++ ..|+. .+|+.+-...
T Consensus 305 ~~~y--~~l~~~i~~s~v~~L~ 324 (687)
T 3k6s_B 305 VKTY--EKLTEIIPKSAVGELS 324 (687)
T ss_dssp HHHH--HHHHHHSSSCCEEECC
T ss_pred hhhH--HHHHhhcCCceeeeec
Confidence 5544 34443 3455555544
No 50
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=88.18 E-value=1 Score=46.21 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=48.1
Q ss_pred hcCCCcEEEEecCcEEEEEecCCCCCCCCCCCChhHHHHHHHHHHH-hcCCCCceEEEEeCCCCcHHHHHhhcc
Q 007267 506 ITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMK-QERSITPKLIFIRGGQDDATIFENYLI 578 (610)
Q Consensus 506 ~~s~~~iyllD~g~~~~i~~G~~v~~~~~~~~~~~~~~~~~i~~i~-~~r~~~p~l~~~~~~~~~~~~f~~~Lv 578 (610)
.+..+-+||||+|-.+++|.|...+. .+-...+.+.+.|+ ..|.....+.++.||...+.| ...|-
T Consensus 158 sLns~d~FIL~~~~~iy~W~G~~s~~------~Er~~A~~~a~~i~~~~~~g~~~v~~v~EG~E~~~F-w~~LG 224 (347)
T 1j72_A 158 SFNTGDCFILDLGQNIFAWCGGKSNI------LERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEM-IQVLG 224 (347)
T ss_dssp GCBTTSEEEEEETTEEEEEECTTCCH------HHHHHHHHHHHHHHTTSCCSSCEEEEEETTCCCHHH-HHHHC
T ss_pred HcCCCceEEEecCCEEEEEECCCCCH------HHHHHHHHHHHHHHhhccCCCceEEEEeCCCCHHHH-HHHhC
Confidence 34557899999999999999999873 34444556667775 455566789999999865554 45663
No 51
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=86.76 E-value=0.67 Score=52.56 Aligned_cols=90 Identities=16% Similarity=0.251 Sum_probs=51.9
Q ss_pred hhcccccccCCCCCCCcc---cc-cccchhhhcCCCcEEEEecCcEEEEEecCCCCCCCCCCCChhHHH---HHHHHHHH
Q 007267 479 AVYPLLTSYSTPDKQAFP---RH-SLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLL---RTTINKMK 551 (610)
Q Consensus 479 ~~yP~l~~~~spde~~~~---~~-~l~r~~~~~s~~~iyllD~g~~~~i~~G~~v~~~~~~~~~~~~~~---~~~i~~i~ 551 (610)
...|+|+..++-. ..+. .. .+.+.. +..+.+||||+|..|+||+|..++.. ....++ .++++...
T Consensus 611 ~~~~rLf~~s~~~-G~~~v~ev~~~f~Q~d--L~~~dv~iLD~~~eifvWiG~~a~~~-----er~~al~~A~~Y~~~~~ 682 (729)
T 1d0n_A 611 AHPPRLFACSNKI-GRFVIEEVPGEFMQED--LATDDVMLLDTWDQVFVWVGKDSQDE-----EKTEALTSAKRYIDTDP 682 (729)
T ss_dssp HSCCEEEEEECTT-TCCEEEECCSSCCGGG--CCTTSEEEEECSSCEEEEECTTSCHH-----HHSSHHHHHHHHHHHCT
T ss_pred ccCCeEEEEEcCC-CcEEEEEecCcccHhH--CCCCCEEEEeCCCEEEEEECCCCCHH-----HHHHHHHHHHHHHHhCc
Confidence 4468888544211 1110 11 344433 46689999999999999999997631 111223 34444443
Q ss_pred hcCCCCceEEEEeCCCCcHHHHHhhc
Q 007267 552 QERSITPKLIFIRGGQDDATIFENYL 577 (610)
Q Consensus 552 ~~r~~~p~l~~~~~~~~~~~~f~~~L 577 (610)
..|.+..++.++.+|.... .|+++.
T Consensus 683 ~~r~~~~pi~~V~~G~Ep~-~F~~~F 707 (729)
T 1d0n_A 683 AHRDRRTPITVVKQGFEPP-SFVGWF 707 (729)
T ss_dssp TCCCTTCCEEEEETTCCCH-HHHTTC
T ss_pred ccCCCCCcEEEEeCCCCCH-HHHhhh
Confidence 4675545677888886543 444444
No 52
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=81.44 E-value=3.1 Score=40.12 Aligned_cols=61 Identities=15% Similarity=0.246 Sum_probs=47.5
Q ss_pred ceEEEEecCCCCCCCcccccccCcCcccCCCcchhhccCCcchHHHHHHHHHHHHcCcEEEEEEecC-C---CcChhcch
Q 007267 270 ARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITN-E---YTDLASLK 345 (610)
Q Consensus 270 GkIi~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~gisvDlf~~~~-~---~~~l~~l~ 345 (610)
-.|++.++|--|.|..- .+.|+.+.+.||.|..+.+.. + .-|..+|.
T Consensus 11 k~iillTDG~~~~g~~p-----------------------------~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~ 61 (242)
T 3rag_A 11 RQILVITDGCSNIGPDP-----------------------------VEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAH 61 (242)
T ss_dssp EEEEEEESSCCCSSSCH-----------------------------HHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHH
T ss_pred cEEEEEccCCCCCCCCH-----------------------------HHHHHHHHHCCCEEEEEEecCCccccchhHHHHH
Confidence 46888888887776321 257888999999999998843 2 34678999
Q ss_pred hhhccCccEEEEeC
Q 007267 346 FLSIESGGSLFLYS 359 (610)
Q Consensus 346 ~l~~~TGG~v~~~~ 359 (610)
.+|..|||..+...
T Consensus 62 ~IA~~tGG~yf~a~ 75 (242)
T 3rag_A 62 SIADAGGGMCRIVQ 75 (242)
T ss_dssp HHHHHTTSCEEEEC
T ss_pred HHHHhcCCeEEEee
Confidence 99999999988764
No 53
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=80.86 E-value=2.7 Score=47.54 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=47.7
Q ss_pred hcCCCcEEEEecCcEEEEEecCCCCCCCCCCCChhHHHHHHHHHHHh-cCCCCceEEEEeCCCCcHHHHHhhcc
Q 007267 506 ITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMKQ-ERSITPKLIFIRGGQDDATIFENYLI 578 (610)
Q Consensus 506 ~~s~~~iyllD~g~~~~i~~G~~v~~~~~~~~~~~~~~~~~i~~i~~-~r~~~p~l~~~~~~~~~~~~f~~~Lv 578 (610)
.+..+.+||||+|..+++|.|...+. -+-..-+++.+.|+. .|....++.++.+|...+. |...|-
T Consensus 156 SLns~DvFILd~g~~iy~W~G~~s~~------~Er~kA~~~a~~i~~~er~g~~~i~~v~Eg~e~~e-Fw~~LG 222 (729)
T 1d0n_A 156 SFNNGDCFILDLGNNIYQWCGSKSNR------FERLKATQVSKGIRDNERSGRAQVSVFEEGAEPEA-MLQVLG 222 (729)
T ss_dssp GCCSSSEEEEECSSEEEEEECTTCCH------HHHHHHHHHHHHHHHHSGGGCSEEEEEETTCCCHH-HHHHHC
T ss_pred HcCCCCeEEEEcCCEEEEEECCCCCH------HHHHHHHHHHHHHhhhhcCCCccEEEecCCCChHH-HHHHcC
Confidence 34557899999999999999999773 333344566677873 6655678999999986554 444554
No 54
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=78.38 E-value=2.5 Score=40.02 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=32.3
Q ss_pred EEEEEEeCCCCh-hHHHHHHHHHHHH---HHhCCCCcEEEEEeecce
Q 007267 123 VYVAAVDLSSSE-EFLELTRSALQAA---LEAVPSGALFGLATFSHK 165 (610)
Q Consensus 123 ~~vFvID~s~~~-~~l~~l~~~l~~~---l~~lp~~~~VglITf~~~ 165 (610)
-.+|++|+|.++ ..++.+|+.+... |+.+.++.|+||.+|-+.
T Consensus 5 Dl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk 51 (212)
T 2iue_A 5 DLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM 51 (212)
T ss_dssp EEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS
T ss_pred EEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC
Confidence 378999999997 5566666666554 445567899999999655
No 55
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=76.00 E-value=3.5 Score=42.09 Aligned_cols=58 Identities=10% Similarity=0.183 Sum_probs=40.4
Q ss_pred cCCCcEEEEecCcEEEEEecCCCCCCCCCCCChhHHHHHHHHHHHhcCCCCceEEEEeCCCCcHHHHHhhc
Q 007267 507 TSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMKQERSITPKLIFIRGGQDDATIFENYL 577 (610)
Q Consensus 507 ~s~~~iyllD~g~~~~i~~G~~v~~~~~~~~~~~~~~~~~i~~i~~~r~~~p~l~~~~~~~~~~~~f~~~L 577 (610)
+..+-+||||+|..+++|.|...++ .+-...+++.+.| + ..+.++++|...+.| -..|
T Consensus 150 Lns~d~FIL~~~~~iyvW~G~~s~~------~er~~A~~~a~~l---~---~~i~~v~EG~E~~~F-w~~L 207 (344)
T 2fh1_A 150 LNSNDAFVLKTPSAAYLWVGTGASE------AEKTGAQELLRVL---R---AQPVQVAEGSEPDGF-WEAL 207 (344)
T ss_dssp CBTTSEEEEECSSCEEEEECTTCCH------HHHHHHHHHHHHT---T---CCCEEEETTCCCHHH-HHHT
T ss_pred cCCCceEEEecCCEEEEEECCCCCH------HHHHHHHHHHHHh---C---CCcEEEeCCCCcHHH-HHhc
Confidence 4557899999999999999999873 2333345555555 2 357888999766554 4444
No 56
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=74.91 E-value=0.57 Score=34.20 Aligned_cols=23 Identities=26% Similarity=0.775 Sum_probs=15.0
Q ss_pred cCcCcCeeEecCceEe-C-ceeEEcCCCC
Q 007267 52 RCENCYAYFNTYCELE-Q-WAWTCSLCGS 78 (610)
Q Consensus 52 RC~~C~ayiNp~~~~~-~-~~w~C~~C~~ 78 (610)
-|.+|++++.- . + -+|+|++|.+
T Consensus 35 ~CaRCGg~v~l----r~~k~~WvC~lC~k 59 (62)
T 2a20_A 35 FCARCGGRVSL----RSNKVMWVCNLCRK 59 (62)
T ss_dssp ECTTSEEEEES----STTCEEEEEHHHHH
T ss_pred eecccCCEeee----cCCeEEEEehhhhh
Confidence 36667765533 2 2 3899999964
No 57
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=68.95 E-value=8 Score=39.87 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=38.9
Q ss_pred cCCCcEEEEecC-cEEEEEecCCCCCCCCCCCChhHHHHHHHHHHHhcCCCCceEEEEeCCCCcHHHHHhhc
Q 007267 507 TSGSPIFLLDAF-TTIIVFYSSTADPTLPFPPPQDCLLRTTINKMKQERSITPKLIFIRGGQDDATIFENYL 577 (610)
Q Consensus 507 ~s~~~iyllD~g-~~~~i~~G~~v~~~~~~~~~~~~~~~~~i~~i~~~r~~~p~l~~~~~~~~~~~~f~~~L 577 (610)
+..+-+||||+| ..+++|.|...+. .+-...+.+.+.|+. +..++.+|...+.| -.-|
T Consensus 191 Lns~d~FILd~~~~~iyvW~G~~ss~------~Er~~A~~~a~~i~~------~~~~v~EG~Ep~~F-w~~L 249 (371)
T 3fg6_A 191 LNSNDVFVLKLPQNSGYIWVGKGASQ------EEEKGAEYVASVLKC------KTLRIQEGEEPEEF-WNSL 249 (371)
T ss_dssp CBTTSEEEEECTTSEEEEEECTTCCH------HHHHHHHHHHHHTTC------EEEEEETTCCCHHH-HHHT
T ss_pred ccCCCeEEEEcCCCeEEEEECCCCCH------HHHHHHHHHHHHhcC------CeEEEeCCCCCHHH-HHHc
Confidence 455778999999 9999999999872 233334455566642 24678888765554 3444
No 58
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=68.04 E-value=0.98 Score=34.82 Aligned_cols=17 Identities=24% Similarity=0.688 Sum_probs=15.5
Q ss_pred ceeEEcCCCCCCCCChh
Q 007267 69 WAWTCSLCGSLNGLSSQ 85 (610)
Q Consensus 69 ~~w~C~~C~~~N~~p~~ 85 (610)
-.|+|++|...|.++.+
T Consensus 16 ~tWVCpICsfsN~v~s~ 32 (76)
T 2j9u_B 16 STWVCPICMVSNETQGE 32 (76)
T ss_dssp EEEECTTTCCEEEESSC
T ss_pred cceECccccccCcCccc
Confidence 47999999999999877
No 59
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=57.44 E-value=6.4 Score=31.22 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=19.6
Q ss_pred CcCcCcCeeEecCceEeCceeEEcCCCCCCC
Q 007267 51 PRCENCYAYFNTYCELEQWAWTCSLCGSLNG 81 (610)
Q Consensus 51 ~RC~~C~ayiNp~~~~~~~~w~C~~C~~~N~ 81 (610)
-.|..|++-+ .-....+.|.|..|+....
T Consensus 28 y~Cp~CG~~~--v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 28 HACPNCGEDR--VDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp EECSSSCCEE--EEEEETTEEEETTTCCEEE
T ss_pred CcCCCCCCcc--eeccCCCeEECCCCCCEec
Confidence 4789998832 1122247999999998654
No 60
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=56.58 E-value=2.5 Score=34.97 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=24.9
Q ss_pred CCCcCcCcCeeEecCceEeCceeEEcCCCCCCCCChh
Q 007267 49 MLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQ 85 (610)
Q Consensus 49 ~~~RC~~C~ayiNp~~~~~~~~w~C~~C~~~N~~p~~ 85 (610)
.|++|.+|+--. ..-..+--.||.|+..|-.++.
T Consensus 66 ~p~~C~~CG~~F---~~~~~kPsrCP~CkSe~Ie~P~ 99 (105)
T 2gmg_A 66 KPAQCRKCGFVF---KAEINIPSRCPKCKSEWIEEPR 99 (105)
T ss_dssp CCCBBTTTCCBC---CCCSSCCSSCSSSCCCCBCCCC
T ss_pred ECcChhhCcCee---cccCCCCCCCcCCCCCccCCcc
Confidence 578999999653 1111356899999999987765
No 61
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=55.58 E-value=1.9 Score=33.15 Aligned_cols=32 Identities=22% Similarity=0.573 Sum_probs=21.5
Q ss_pred CCCcCcCcCeeEecCceEeCceeEEcCCCCCCCCCh
Q 007267 49 MLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSS 84 (610)
Q Consensus 49 ~~~RC~~C~ayiNp~~~~~~~~w~C~~C~~~N~~p~ 84 (610)
.++||. |+++. |..-..+.-.|+ ||+.-.+..
T Consensus 3 ~vv~C~-C~~~~--~~~~~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 3 IIFRCD-CGRAL--YSREGAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp EEEEET-TSCCE--EEETTCSEEEET-TTEEEECCS
T ss_pred EEEECC-CCCEE--EEcCCCcEEECC-CCCeeeece
Confidence 357999 99973 221123678899 998777643
No 62
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=53.96 E-value=2.9 Score=33.42 Aligned_cols=30 Identities=23% Similarity=0.570 Sum_probs=21.2
Q ss_pred CCcCcCcCeeEecC-----------ceEeC--ceeEEcCCCCC
Q 007267 50 LPRCENCYAYFNTY-----------CELEQ--WAWTCSLCGSL 79 (610)
Q Consensus 50 ~~RC~~C~ayiNp~-----------~~~~~--~~w~C~~C~~~ 79 (610)
.-+|..|+=...|- ..|++ ..|+|+.|+..
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 35899999766654 33443 57999999973
No 63
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=52.41 E-value=2.9 Score=29.22 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=18.2
Q ss_pred CcCcCcCeeEecC----ceEeC--ceeEEcCCCCC
Q 007267 51 PRCENCYAYFNTY----CELEQ--WAWTCSLCGSL 79 (610)
Q Consensus 51 ~RC~~C~ayiNp~----~~~~~--~~w~C~~C~~~ 79 (610)
-+|..|+-...|- ..|++ ..|+|+.|+..
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 3688887555543 23332 46888888864
No 64
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=48.29 E-value=4.2 Score=29.16 Aligned_cols=28 Identities=29% Similarity=0.802 Sum_probs=16.6
Q ss_pred cCcCcCeeEecC-----------ceEeC--ceeEEcCCCCC
Q 007267 52 RCENCYAYFNTY-----------CELEQ--WAWTCSLCGSL 79 (610)
Q Consensus 52 RC~~C~ayiNp~-----------~~~~~--~~w~C~~C~~~ 79 (610)
+|..|+=...|- ..|++ ..|+|+.|+..
T Consensus 4 ~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 4 SCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred EeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 577777555543 22332 46888888863
No 65
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=46.00 E-value=4.3 Score=42.34 Aligned_cols=54 Identities=9% Similarity=0.227 Sum_probs=0.0
Q ss_pred cCCCcEEEEecCcEEEEEecCCCCCCCCCCCChhHHHHHHHHHHHhcCCCCceEEEEeCCCCcHH
Q 007267 507 TSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMKQERSITPKLIFIRGGQDDAT 571 (610)
Q Consensus 507 ~s~~~iyllD~g~~~~i~~G~~v~~~~~~~~~~~~~~~~~i~~i~~~r~~~p~l~~~~~~~~~~~ 571 (610)
+..+-+||||+|..+++|.|...+. .+-...+.+.+.|+. ..+.++.+|...+.
T Consensus 204 Lns~d~FILd~~~~iyvW~G~~ss~------~Er~~A~~va~~i~~-----~~~~~v~EG~Ep~~ 257 (398)
T 3fg7_A 204 LNSNDVFVLKTQSCCYLWCGKGCSG------DEREMAKMVADTISR-----TEKQVVVEGQEPAN 257 (398)
T ss_dssp -----------------------------------------------------------------
T ss_pred ccCCceEEEEeCCeEEEEeCCCCCH------HHHHHHHHHHHHhcC-----CcEEEEeCCCCchh
Confidence 4556799999999999999999874 222233344444431 24566777754343
No 66
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=45.96 E-value=4.5 Score=29.28 Aligned_cols=28 Identities=25% Similarity=0.737 Sum_probs=17.7
Q ss_pred cCcCcCeeEecC-----------ceEeC--ceeEEcCCCCC
Q 007267 52 RCENCYAYFNTY-----------CELEQ--WAWTCSLCGSL 79 (610)
Q Consensus 52 RC~~C~ayiNp~-----------~~~~~--~~w~C~~C~~~ 79 (610)
+|..|+=...|- ..|++ ..|+|+.|+..
T Consensus 5 ~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 5 TCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp EETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 677777666553 23332 46888888864
No 67
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=43.38 E-value=14 Score=31.58 Aligned_cols=29 Identities=24% Similarity=0.523 Sum_probs=23.4
Q ss_pred CCCcCcCcCeeEecCceEeCceeEEcCCCCCC
Q 007267 49 MLPRCENCYAYFNTYCELEQWAWTCSLCGSLN 80 (610)
Q Consensus 49 ~~~RC~~C~ayiNp~~~~~~~~w~C~~C~~~N 80 (610)
..|.|.+|.+ .|.--|+..|+|+-|++.-
T Consensus 26 ~lP~CP~C~s---eytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNS---EYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCC---CCCEECSSSEEETTTTEEE
T ss_pred cCCCCCCCCC---cceEecCCeEECCcccccc
Confidence 4688999986 5666677899999999854
No 68
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=41.72 E-value=8.7 Score=35.96 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=18.3
Q ss_pred CcCcCcCeeEecCceEeCceeEEcCCCCCC
Q 007267 51 PRCENCYAYFNTYCELEQWAWTCSLCGSLN 80 (610)
Q Consensus 51 ~RC~~C~ayiNp~~~~~~~~w~C~~C~~~N 80 (610)
-+|..|+-.... ..-|+||.|+..-
T Consensus 172 ~~C~~CG~i~~g-----~~p~~CP~C~~~k 196 (202)
T 1yuz_A 172 HLCPICGYIHKG-----EDFEKCPICFRPK 196 (202)
T ss_dssp EECSSSCCEEES-----SCCSBCTTTCCBG
T ss_pred EEECCCCCEEcC-----cCCCCCCCCCCCh
Confidence 489999965443 2349999999753
No 69
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.03 E-value=17 Score=25.69 Aligned_cols=25 Identities=24% Similarity=0.731 Sum_probs=18.3
Q ss_pred CcCcCcCe--eEecCceEeCceeEEcCCCCC
Q 007267 51 PRCENCYA--YFNTYCELEQWAWTCSLCGSL 79 (610)
Q Consensus 51 ~RC~~C~a--yiNp~~~~~~~~w~C~~C~~~ 79 (610)
--|.+|++ ++-+ ...+|.|+=|+..
T Consensus 20 k~CP~CG~~~fm~~----~~~R~~C~kCG~t 46 (50)
T 3j20_Y 20 KFCPRCGPGVFMAD----HGDRWACGKCGYT 46 (50)
T ss_dssp EECSSSCSSCEEEE----CSSEEECSSSCCE
T ss_pred ccCCCCCCceEEec----CCCeEECCCCCCE
Confidence 45999998 5432 3579999999863
No 70
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=39.21 E-value=29 Score=29.32 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHhCCC---CcEEEEEeecceeE
Q 007267 135 EFLELTRSALQAALEAVPS---GALFGLATFSHKIG 167 (610)
Q Consensus 135 ~~l~~l~~~l~~~l~~lp~---~~~VglITf~~~V~ 167 (610)
...+.+|++|+.-+..-|. +++|-+++||+.|.
T Consensus 110 ~fAe~~kDAi~Dyi~t~P~PT~~~~VtvcsFdd~V~ 145 (147)
T 1b3t_A 110 IFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVD 145 (147)
T ss_dssp HHHHHHHHHHHHHHHTSCTTGGGEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCcceEEEEEeCCCCcc
Confidence 4457899999988876653 68999999999764
No 71
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=39.15 E-value=6.6 Score=28.50 Aligned_cols=11 Identities=36% Similarity=0.936 Sum_probs=7.9
Q ss_pred ceeEEcCCCCC
Q 007267 69 WAWTCSLCGSL 79 (610)
Q Consensus 69 ~~w~C~~C~~~ 79 (610)
..|+|+.|+..
T Consensus 35 ~dw~CP~Cga~ 45 (55)
T 2v3b_B 35 ADWVCPDCGVG 45 (55)
T ss_dssp TTCCCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 46888888763
No 72
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=38.42 E-value=6.8 Score=30.83 Aligned_cols=30 Identities=27% Similarity=0.665 Sum_probs=19.8
Q ss_pred CCcCcCcCeeEecCc-----------eEeC--ceeEEcCCCCC
Q 007267 50 LPRCENCYAYFNTYC-----------ELEQ--WAWTCSLCGSL 79 (610)
Q Consensus 50 ~~RC~~C~ayiNp~~-----------~~~~--~~w~C~~C~~~ 79 (610)
.-+|..|+=...|-- .|++ ..|+|+.|+..
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 358999986666532 2332 47999999873
No 73
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=37.71 E-value=34 Score=23.80 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.8
Q ss_pred CCcCcCcCeeEecCceEeC--ceeEEcCCCCC
Q 007267 50 LPRCENCYAYFNTYCELEQ--WAWTCSLCGSL 79 (610)
Q Consensus 50 ~~RC~~C~ayiNp~~~~~~--~~w~C~~C~~~ 79 (610)
...|..|++ .-..+|. +.++|.-|+..
T Consensus 5 ~~~CP~C~~---~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACES---AELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSC---CCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCC---cceEEcCCCCeEECcccCCc
Confidence 467999998 1234553 68999999984
No 74
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=37.64 E-value=7.4 Score=29.78 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=18.4
Q ss_pred CcCcCcCeeEecC-----------ceEeC--ceeEEcCCCCC
Q 007267 51 PRCENCYAYFNTY-----------CELEQ--WAWTCSLCGSL 79 (610)
Q Consensus 51 ~RC~~C~ayiNp~-----------~~~~~--~~w~C~~C~~~ 79 (610)
-+|..|+=...|- ..|++ ..|+|+.|+..
T Consensus 8 y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 8 YECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp EEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred EEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 4788887555543 22332 46899999874
No 75
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=37.58 E-value=6.2 Score=28.30 Aligned_cols=11 Identities=36% Similarity=1.214 Sum_probs=7.3
Q ss_pred ceeEEcCCCCC
Q 007267 69 WAWTCSLCGSL 79 (610)
Q Consensus 69 ~~w~C~~C~~~ 79 (610)
..|+|+.|+..
T Consensus 35 ~dw~CP~Cg~~ 45 (52)
T 1e8j_A 35 DDWACPVCGAS 45 (52)
T ss_dssp TTCCCSSSCCC
T ss_pred CCCcCCCCCCc
Confidence 46777777763
No 76
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=35.15 E-value=11 Score=33.68 Aligned_cols=32 Identities=19% Similarity=0.560 Sum_probs=25.2
Q ss_pred CCcCcCcCeeEecCceEe---CceeEEcCCCCCCC
Q 007267 50 LPRCENCYAYFNTYCELE---QWAWTCSLCGSLNG 81 (610)
Q Consensus 50 ~~RC~~C~ayiNp~~~~~---~~~w~C~~C~~~N~ 81 (610)
...|..|+-.++--|.+. ...|+|.+|...-.
T Consensus 85 g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~re 119 (153)
T 2zet_C 85 RRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARV 119 (153)
T ss_dssp CEECTTTCCEECGGGEECCSSSSSCEEHHHHHHHH
T ss_pred CCcCCCCCchhhcccccccCCCCcEeeHHHHHHHH
Confidence 467888888888888764 36899999987654
No 77
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=34.38 E-value=12 Score=28.16 Aligned_cols=31 Identities=19% Similarity=0.441 Sum_probs=25.8
Q ss_pred CCCCcCcCcCeeEecCceEe-CceeEEcCCCC
Q 007267 48 HMLPRCENCYAYFNTYCELE-QWAWTCSLCGS 78 (610)
Q Consensus 48 ~~~~RC~~C~ayiNp~~~~~-~~~w~C~~C~~ 78 (610)
..+..|.+|++--.|..+-. .+...||-|+.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl 38 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGL 38 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHH
Confidence 45789999999999988877 35689999974
No 78
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=32.71 E-value=11 Score=23.89 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=11.5
Q ss_pred ceeEEcCCCCCCCC
Q 007267 69 WAWTCSLCGSLNGL 82 (610)
Q Consensus 69 ~~w~C~~C~~~N~~ 82 (610)
+-|.|+.|+..|--
T Consensus 4 gDW~C~~C~~~Nfa 17 (32)
T 2lk0_A 4 EDWLCNKCCLNNFR 17 (32)
T ss_dssp SEEECTTTCCEEET
T ss_pred CCCCcCcCcCCcCh
Confidence 46999999998843
No 79
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=30.49 E-value=23 Score=34.91 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEeecc
Q 007267 135 EFLELTRSALQAALEAVPSGALFGLATFSH 164 (610)
Q Consensus 135 ~~l~~l~~~l~~~l~~lp~~~~VglITf~~ 164 (610)
.+|+.++.+|.++++.|.++-|+++|||-+
T Consensus 207 ~EL~~L~~~L~~a~~~L~~gGrl~visfHS 236 (285)
T 1wg8_A 207 DELNALKEFLEQAAEVLAPGGRLVVIAFHS 236 (285)
T ss_dssp THHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 689999999999999999999999999954
No 80
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=30.00 E-value=15 Score=31.17 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=25.3
Q ss_pred CcCcCcCeeEecCce----EeCc-----eeEEcCCCCCCCCC
Q 007267 51 PRCENCYAYFNTYCE----LEQW-----AWTCSLCGSLNGLS 83 (610)
Q Consensus 51 ~RC~~C~ayiNp~~~----~~~~-----~w~C~~C~~~N~~p 83 (610)
--|++|++++=|-.. +..+ .++|..||+...+|
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 369999999988743 2332 57899999988776
No 81
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=29.90 E-value=15 Score=30.99 Aligned_cols=27 Identities=26% Similarity=0.651 Sum_probs=19.3
Q ss_pred CcCcCcCeeEecCceEeCcee-EEcCCCCCCC
Q 007267 51 PRCENCYAYFNTYCELEQWAW-TCSLCGSLNG 81 (610)
Q Consensus 51 ~RC~~C~ayiNp~~~~~~~~w-~C~~C~~~N~ 81 (610)
.||..|+...-. +.... .||-|+..+.
T Consensus 74 ~~C~~CG~~~e~----~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 74 LECKDCSHVFKP----NALDYGVCEKCHSKNV 101 (119)
T ss_dssp EECSSSSCEECS----CCSTTCCCSSSSSCCC
T ss_pred EEcCCCCCEEeC----CCCCCCcCccccCCCc
Confidence 589999876543 34567 8999988864
No 82
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=27.95 E-value=26 Score=35.46 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEeecc
Q 007267 135 EFLELTRSALQAALEAVPSGALFGLATFSH 164 (610)
Q Consensus 135 ~~l~~l~~~l~~~l~~lp~~~~VglITf~~ 164 (610)
.+|+.++.+|.++++.|.++-|+++|||-+
T Consensus 248 ~EL~~L~~~L~~a~~~L~~gGRl~VISFHS 277 (347)
T 3tka_A 248 SELEEIEQALKSSLNVLAPGGRLSIISFHS 277 (347)
T ss_dssp THHHHHHHHHHHHHHHEEEEEEEEEEESSH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 689999999999999999999999999954
No 83
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=27.24 E-value=18 Score=23.40 Aligned_cols=18 Identities=28% Similarity=0.610 Sum_probs=13.6
Q ss_pred eCceeEEcCCCCCCCCCh
Q 007267 67 EQWAWTCSLCGSLNGLSS 84 (610)
Q Consensus 67 ~~~~w~C~~C~~~N~~p~ 84 (610)
+.+.|.|..|...|....
T Consensus 4 ~~G~W~C~~C~v~N~~~~ 21 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKADS 21 (34)
T ss_dssp --CCEECTTTCCEECSSC
T ss_pred CCCceECCeeEeECcccc
Confidence 457899999999997643
No 84
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.85 E-value=24 Score=30.59 Aligned_cols=31 Identities=29% Similarity=0.683 Sum_probs=24.6
Q ss_pred CcCcCcCeeEecCceEeC------ceeEEcCCCCCCC
Q 007267 51 PRCENCYAYFNTYCELEQ------WAWTCSLCGSLNG 81 (610)
Q Consensus 51 ~RC~~C~ayiNp~~~~~~------~~w~C~~C~~~N~ 81 (610)
..|..|+-.++.-|.... ..|.|.+|...-+
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHHHHH
Confidence 578889988888888742 4899999997544
No 85
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=26.69 E-value=11 Score=26.32 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=23.5
Q ss_pred CCCCcCcCcCeeEecCceEe-CceeEEcCCCC
Q 007267 48 HMLPRCENCYAYFNTYCELE-QWAWTCSLCGS 78 (610)
Q Consensus 48 ~~~~RC~~C~ayiNp~~~~~-~~~w~C~~C~~ 78 (610)
.....|.+|++--.|..+-. .....||-|+.
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl 33 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGL 33 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHH
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHH
Confidence 35678999999888877765 34578888875
No 86
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=26.19 E-value=26 Score=25.85 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=20.4
Q ss_pred CCCcCcCcCeeEecCceEeCceeEEcCCCCCCCCC
Q 007267 49 MLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLS 83 (610)
Q Consensus 49 ~~~RC~~C~ayiNp~~~~~~~~w~C~~C~~~N~~p 83 (610)
.+.+|.+|+.|-= +-+|+-||..+..+
T Consensus 5 ~mr~C~~CgvYTL--------k~~CP~CG~~T~~~ 31 (60)
T 2apo_B 5 RMKKCPKCGLYTL--------KEICPKCGEKTVIP 31 (60)
T ss_dssp CCEECTTTCCEES--------SSBCSSSCSBCBCC
T ss_pred hceeCCCCCCEec--------cccCcCCCCcCCCC
Confidence 4678999998842 45699999877654
No 87
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=25.74 E-value=23 Score=20.74 Aligned_cols=25 Identities=32% Similarity=0.903 Sum_probs=20.3
Q ss_pred cCcCcCeeEecCceEe-CceeEEcCC
Q 007267 52 RCENCYAYFNTYCELE-QWAWTCSLC 76 (610)
Q Consensus 52 RC~~C~ayiNp~~~~~-~~~w~C~~C 76 (610)
.|-.|-.|=|-||.-. ++.|-|.=|
T Consensus 2 ~cvscv~fgngfcgdncgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCGDNCGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEECSSSCEEECSCC
T ss_pred cceEeEeecCccccCCcCCcccccCC
Confidence 4778888889998766 589999876
No 88
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=24.57 E-value=18 Score=23.16 Aligned_cols=14 Identities=29% Similarity=0.805 Sum_probs=11.5
Q ss_pred ceeEEcCCCCCCCC
Q 007267 69 WAWTCSLCGSLNGL 82 (610)
Q Consensus 69 ~~w~C~~C~~~N~~ 82 (610)
.-|+|+-|+..|--
T Consensus 5 gDW~C~~C~~~Nfa 18 (33)
T 2k1p_A 5 NDWQCKTCSNVNWA 18 (33)
T ss_dssp SSCBCSSSCCBCCT
T ss_pred CCcccCCCCCcccc
Confidence 46999999999953
No 89
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=23.89 E-value=17 Score=28.80 Aligned_cols=17 Identities=18% Similarity=0.513 Sum_probs=13.8
Q ss_pred CceeEEcCCCCCCCCCh
Q 007267 68 QWAWTCSLCGSLNGLSS 84 (610)
Q Consensus 68 ~~~w~C~~C~~~N~~p~ 84 (610)
...|.|+||++.+.+.-
T Consensus 21 ~t~F~CPfCnh~~sV~v 37 (85)
T 1wii_A 21 ETQFTCPFCNHEKSCDV 37 (85)
T ss_dssp SSCCCCTTTCCSSCEEE
T ss_pred CCeEcCCCCCCCCeEEE
Confidence 36799999999997643
No 90
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=23.87 E-value=36 Score=24.55 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=19.4
Q ss_pred CcCcCcCeeEecCceEeCceeEEcCCCCC
Q 007267 51 PRCENCYAYFNTYCELEQWAWTCSLCGSL 79 (610)
Q Consensus 51 ~RC~~C~ayiNp~~~~~~~~w~C~~C~~~ 79 (610)
..|.+|++-+ ++.-...+|.|.-|+..
T Consensus 19 ~fCPkCG~~~--~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 19 RFCPRCGPGV--FLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CCCTTTTTTC--CCEECSSEEECTTTCCC
T ss_pred ccCcCCCCce--eEeccCCEEECCCCCCE
Confidence 4699999844 33333469999999875
No 91
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.80 E-value=25 Score=27.22 Aligned_cols=30 Identities=20% Similarity=0.740 Sum_probs=21.4
Q ss_pred CCcCcCcCeeEecCceEeC--ceeEEcCCCCC
Q 007267 50 LPRCENCYAYFNTYCELEQ--WAWTCSLCGSL 79 (610)
Q Consensus 50 ~~RC~~C~ayiNp~~~~~~--~~w~C~~C~~~ 79 (610)
...|..|+-=+.--|.+.. ..|+|.+|...
T Consensus 42 g~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 42 TNTCRGCNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp TSEETTTTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CCcCcccChhhcccccccCCCCCEEEeeCchh
Confidence 3457777777777777663 68999999653
No 92
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=23.00 E-value=25 Score=21.88 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=11.6
Q ss_pred ceeEEcCCCCCCCCC
Q 007267 69 WAWTCSLCGSLNGLS 83 (610)
Q Consensus 69 ~~w~C~~C~~~N~~p 83 (610)
..|.|+.|...|.-.
T Consensus 5 ~~W~C~~CTf~N~~~ 19 (31)
T 1nj3_A 5 AMWACQHCTFMNQPG 19 (31)
T ss_dssp CCEECSSSCCEECSS
T ss_pred ccccCCcccccCCCC
Confidence 478899988888643
No 93
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=22.82 E-value=17 Score=30.72 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=24.7
Q ss_pred CCCcCcCcCeeEecCceEeC-ceeEEcCCCC
Q 007267 49 MLPRCENCYAYFNTYCELEQ-WAWTCSLCGS 78 (610)
Q Consensus 49 ~~~RC~~C~ayiNp~~~~~~-~~w~C~~C~~ 78 (610)
.+..|.+|++---|..+-+. ..+.||-|+.
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl 34 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGL 34 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHH
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhh
Confidence 45789999999999988774 6799999985
No 94
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.34 E-value=27 Score=24.81 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=19.4
Q ss_pred CCcCcCcCeeEecCceEeCceeEEcCCCCCCCCC
Q 007267 50 LPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLS 83 (610)
Q Consensus 50 ~~RC~~C~ayiNp~~~~~~~~w~C~~C~~~N~~p 83 (610)
.-.|.+|++- .-.+.|.|.=||+.|--|
T Consensus 14 k~iCpkC~a~------~~~gaw~CrKCG~~~lr~ 41 (51)
T 3j21_g 14 KYVCLRCGAT------NPWGAKKCRKCGYKRLRP 41 (51)
T ss_dssp EEECTTTCCE------ECTTCSSCSSSSSCCCEE
T ss_pred CccCCCCCCc------CCCCceecCCCCCccccc
Confidence 3468888875 124789999999885433
No 95
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=22.11 E-value=22 Score=30.38 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=25.6
Q ss_pred CcCcCcCeeEecCce----EeCc-----eeEEcCCCCCCCCCh
Q 007267 51 PRCENCYAYFNTYCE----LEQW-----AWTCSLCGSLNGLSS 84 (610)
Q Consensus 51 ~RC~~C~ayiNp~~~----~~~~-----~w~C~~C~~~N~~p~ 84 (610)
--|++|++++=|-.. +..+ .++|..|++...+|-
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p~ 103 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYPY 103 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEEC
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEec
Confidence 369999999988743 2332 578999999887763
No 96
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=22.07 E-value=21 Score=32.92 Aligned_cols=27 Identities=26% Similarity=0.677 Sum_probs=17.4
Q ss_pred CCcCcCcCe-eEecCceEeCceeEEcCCC
Q 007267 50 LPRCENCYA-YFNTYCELEQWAWTCSLCG 77 (610)
Q Consensus 50 ~~RC~~C~a-yiNp~~~~~~~~w~C~~C~ 77 (610)
..+|++|++ |+...-. ....++|+||+
T Consensus 134 l~~C~~Cgg~fv~~~~~-~~~~f~Cp~C~ 161 (192)
T 2avu_E 134 LSSCNCCGGNFITHAHQ-PVGSFACSLCQ 161 (192)
T ss_dssp EEECTTTCCEEEEESSC-CSSCCCCTTC-
T ss_pred eCcCCCCCCCeeCccCC-CCCCCcCCCCC
Confidence 458999987 3322221 23689999999
No 97
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=21.12 E-value=32 Score=34.10 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEeecc
Q 007267 135 EFLELTRSALQAALEAVPSGALFGLATFSH 164 (610)
Q Consensus 135 ~~l~~l~~~l~~~l~~lp~~~~VglITf~~ 164 (610)
.+|+.+.++|.++++.|.++-++++|||-+
T Consensus 219 ~el~~l~~~l~~~~~~l~~ggr~~visfhs 248 (301)
T 1m6y_A 219 RELENLKEFLKKAEDLLNPGGRIVVISFHS 248 (301)
T ss_dssp THHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred cCHHHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 688899999999999999999999999954
No 98
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=21.01 E-value=21 Score=24.79 Aligned_cols=10 Identities=30% Similarity=0.790 Sum_probs=6.6
Q ss_pred eeEEcCCCCC
Q 007267 70 AWTCSLCGSL 79 (610)
Q Consensus 70 ~w~C~~C~~~ 79 (610)
.-+|+.||.+
T Consensus 23 ~IrCpyCGyr 32 (48)
T 4ayb_P 23 GVRCPYCGYK 32 (48)
T ss_dssp SSCCTTTCCS
T ss_pred CcccCccCcE
Confidence 5667777754
No 99
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=20.26 E-value=22 Score=38.59 Aligned_cols=17 Identities=24% Similarity=0.688 Sum_probs=0.0
Q ss_pred ceeEEcCCCCCCCCChh
Q 007267 69 WAWTCSLCGSLNGLSSQ 85 (610)
Q Consensus 69 ~~w~C~~C~~~N~~p~~ 85 (610)
..|+|++|...|++|..
T Consensus 116 ~tWvC~ICsfsN~~~~~ 132 (566)
T 1w7p_D 116 STWVCPICMVSNETQGE 132 (566)
T ss_dssp -----------------
T ss_pred cceeccccccCCCCCCC
Confidence 58999999999999876
No 100
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.08 E-value=36 Score=21.98 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=11.4
Q ss_pred eeEEcCCCCCCCCChh
Q 007267 70 AWTCSLCGSLNGLSSQ 85 (610)
Q Consensus 70 ~w~C~~C~~~N~~p~~ 85 (610)
.++||+|.+.-.-+..
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 5999999876554443
No 101
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=20.02 E-value=22 Score=24.32 Aligned_cols=29 Identities=21% Similarity=0.497 Sum_probs=21.3
Q ss_pred CCcCcCcCeeEecCceEe-CceeEEcCCCC
Q 007267 50 LPRCENCYAYFNTYCELE-QWAWTCSLCGS 78 (610)
Q Consensus 50 ~~RC~~C~ayiNp~~~~~-~~~w~C~~C~~ 78 (610)
|..|.+|++--.|..+-. ++.-.||-|+-
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl 30 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQPLCNACGL 30 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSCEECHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCCcccHHHHH
Confidence 457999999887777765 34578998874
Done!