BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007268
(610 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 126/280 (45%), Gaps = 48/280 (17%)
Query: 155 AFESRASILNEIMDALKN--PNVNMLLIYGMGGIGKTTLAKKVAR-KAESDKLF----DQ 207
F +R ++N I L + I+GM G GK+ LA + R + + F
Sbjct: 125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHW 184
Query: 208 VVLSEVSESRDVRKIQGEIADKLG--------LKFDVESESGRARILYDRLKKEERILVI 259
V + + +S + K+Q + +L L ++E R RIL L+K R L+I
Sbjct: 185 VSVGKQDKSGLLMKLQN-LCTRLDQDESFSQRLPLNIEEAKDRLRIL--MLRKHPRSLLI 241
Query: 260 LDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEVLSGEMESRKNFPV----GFLKEEEA 315
LD++W D + D + C++L T R + V M + PV G K E
Sbjct: 242 LDDVW------DSWVLKAFDSQ-CQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEI 294
Query: 316 WSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALRNKGIREWKDALEQL--- 372
SLF M + ++L E A ++++EC G P+ + + LR+ R W+ L+QL
Sbjct: 295 LSLFVNM-----KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR-WEYYLKQLQNK 348
Query: 373 -----RRPSSSNFKDVQPAAFKAIELSYNKLGRDDLKNIF 407
R+ SS +++ + A ++E+ R+D+K+ +
Sbjct: 349 QFKRIRKSSSYDYEALDEAMSISVEML-----REDIKDYY 383
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 125/280 (44%), Gaps = 48/280 (17%)
Query: 155 AFESRASILNEIMDALKN--PNVNMLLIYGMGGIGKTTLAKKVAR-KAESDKLF----DQ 207
F +R ++N I L + I+GM G GK+ LA + R + + F
Sbjct: 131 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHW 190
Query: 208 VVLSEVSESRDVRKIQGEIADKLG--------LKFDVESESGRARILYDRLKKEERILVI 259
V + + +S + K+Q + +L L ++E R RIL L+K R L+I
Sbjct: 191 VSVGKQDKSGLLMKLQN-LCTRLDQDESFSQRLPLNIEEAKDRLRIL--MLRKHPRSLLI 247
Query: 260 LDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEVLSGEMESRKNFPV----GFLKEEEA 315
LD++W++ L C++L T R + V M + PV G K E
Sbjct: 248 LDDVWDSWVLKAFD-------SQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEI 300
Query: 316 WSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALRNKGIREWKDALEQL--- 372
SLF M + ++L E A ++++EC G P+ + + LR+ R W+ L+QL
Sbjct: 301 LSLFVNM-----KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR-WEYYLKQLQNK 354
Query: 373 -----RRPSSSNFKDVQPAAFKAIELSYNKLGRDDLKNIF 407
R+ SS +++ + A ++E+ R+D+K+ +
Sbjct: 355 QFKRIRKSSSYDYEALDEAMSISVEML-----REDIKDYY 389
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 125/278 (44%), Gaps = 46/278 (16%)
Query: 156 FESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVAR-KAESDKLF----DQV 208
F +R +++ I L N + IYGM G GK+ LA + R + + F V
Sbjct: 126 FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV 185
Query: 209 VLSEVSESRDVRKIQG-------EIADKLGLKFDVESESGRARILYDRLKKEERILVILD 261
+ + +S + K+Q E + L ++E R R+L L+K R L+ILD
Sbjct: 186 SIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVL--MLRKHPRSLLILD 243
Query: 262 NIWENLDLLDVGIPHGDDHKGCKVLFTARSEEVLSGEMESRKNFPV--GFLKEE--EAWS 317
++W D + D++ C++L T R + V M + PV G +E+ E S
Sbjct: 244 DVW------DPWVLKAFDNQ-CQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILS 296
Query: 318 LFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALRNKGIREWKDALEQL----- 372
LF M + +L A ++++EC G P+ + + LR+ R W L QL
Sbjct: 297 LFVNMKKE-----DLPAEAHSIIKECKGSPLVVSLIGALLRDFPNR-WAYYLRQLQNKQF 350
Query: 373 ---RRPSSSNFKDVQPAAFKAIELSYNKLGRDDLKNIF 407
R+ SS +++ + A ++E+ R+D+K+ +
Sbjct: 351 KRIRKSSSYDYEALDEAMSISVEML-----REDIKDYY 383
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 124/278 (44%), Gaps = 46/278 (16%)
Query: 156 FESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVAR-KAESDKLF----DQV 208
F +R +++ I L N + IYGM G GK+ LA + R + + F V
Sbjct: 133 FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV 192
Query: 209 VLSEVSESRDVRKIQG-------EIADKLGLKFDVESESGRARILYDRLKKEERILVILD 261
+ + +S + K+Q E + L ++E R R+L L+K R L+ILD
Sbjct: 193 SIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVL--MLRKHPRSLLILD 250
Query: 262 NIWENLDLLDVGIPHGDDHKGCKVLFTARSEEVLSGEMESRKNFPV--GFLKEE--EAWS 317
++W D + D++ C++L T + V M + PV G +E+ E S
Sbjct: 251 DVW------DPWVLKAFDNQ-CQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILS 303
Query: 318 LFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALRNKGIREWKDALEQL----- 372
LF M + +L A ++++EC G P+ + + LR+ R W L QL
Sbjct: 304 LFVNMKKE-----DLPAEAHSIIKECKGSPLVVSLIGALLRDFPNR-WAYYLRQLQNKQF 357
Query: 373 ---RRPSSSNFKDVQPAAFKAIELSYNKLGRDDLKNIF 407
R+ SS +++ + A ++E+ R+D+K+ +
Sbjct: 358 KRIRKSSSYDYEALDEAMSISVEML-----REDIKDYY 390
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 20/115 (17%)
Query: 149 PNKDYE---AFESRASILNEIMD-ALKNPNV---------NMLLIYGMGGIGKTTLAKKV 195
PN YE E + + E+++ LK+P + +L+YG G GKT LAK V
Sbjct: 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71
Query: 196 ARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRL 250
A E++ F +VV SE+ V+K GE A + F + E + I D +
Sbjct: 72 A--TETNATFIRVVGSEL-----VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEI 119
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 169 ALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV 219
A++ +++ ++++G G GKTTLA+ +AR A +D V S V E R+
Sbjct: 44 AIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREA 94
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 149 PNKDYEAFESRASI--LNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFD 206
P+ D E + R I L+ ++D + ++++ G GG+GKTT+A +A + +D FD
Sbjct: 300 PSSD-EYLQQRPDIPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRL-ADMGFD 357
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 154 EAFESRASILNEIMDALKNPN--VNMLLIYGMGGIGKTTLAKKVARKA-ESDKLFDQVVL 210
EA + A + LK+PN + L G G+GKT LAK +A ++++ ++ +
Sbjct: 21 EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 80
Query: 211 SEVSESRDVRKIQGEIADKLGLKFDVE-SESGRAR----ILYDRLKK 252
+E E V ++ G +G + + +E+ R R IL+D ++K
Sbjct: 81 TEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEK 127
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 154 EAFESRASILNEIMDALKNPN--VNMLLIYGMGGIGKTTLAKKVARKA-ESDKLFDQVVL 210
EA + A + LK+PN + L G G+GKT LAK +A ++++ ++ +
Sbjct: 565 EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624
Query: 211 SEVSESRDVRKIQGEIADKLGLKFDVE-SESGRAR----ILYDRLKK 252
+E E V ++ G +G + + +E+ R R IL+D ++K
Sbjct: 625 TEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEK 671
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 154 EAFESRASILNEIMDALKNPN--VNMLLIYGMGGIGKTTLAKKVA 196
EA + A + LK+PN + L G G+GKT LAK +A
Sbjct: 24 EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 68
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 178 LLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVE 237
+L+YG G GKT A+ VA + +D F +V+ SE+ V+K GE A + F++
Sbjct: 246 ILLYGPPGTGKTLCARAVANR--TDATFIRVIGSEL-----VQKYVGEGARMVRELFEMA 298
Query: 238 SESGRARILYDRL 250
I +D +
Sbjct: 299 RTKKACIIFFDEI 311
>pdb|1IVZ|A Chain A, Solution Structure Of The Sea Domain From Murine
Hypothetical Protein Homologous To Human Mucin 16
Length = 132
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 363 REWKDALEQLRRPSS--SNFKDVQPAAFKAIELSYNKLGRDDLKN 405
R ++AL QL R SS S F D Q AF+++ + N G D L N
Sbjct: 42 RSIENALNQLFRNSSIKSYFSDCQVLAFRSVSNNNNHTGVDSLCN 86
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 163 LNEIM-DALKNPNVNMLLIYGMGGIGKTTLAKKVARKAES 201
L E++ AL+ + L+YG+ G GKT +A+ V R+ E+
Sbjct: 31 LAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 178 LLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGE 225
+L+YG G GK+ LAK VA +A S VS S V K GE
Sbjct: 54 ILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSSDLVSKWMGE 94
>pdb|1OBS|A Chain A, Structure Of Ricin A Chain Mutant
pdb|1OBT|A Chain A, Structure Of Ricin A Chain Mutant, Complex With Amp
Length = 267
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 29/120 (24%)
Query: 152 DYEAFESRASILNEIMDALKNP---NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQV 208
+Y+ E A L E ++ P ++ L Y GG TLA+ +
Sbjct: 122 NYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLARSFI-----------I 170
Query: 209 VLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD 268
+ +SE+ + I+GE+ R RI Y+R + ++ L+N W L
Sbjct: 171 CIQMISEAAHFQYIEGEM---------------RTRIRYNRRSAPDPSVITLENSWGRLS 215
>pdb|1UQ4|A Chain A, Ricin A-chain (recombinant) R213d Mutant
Length = 263
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 29/120 (24%)
Query: 152 DYEAFESRASILNEIMDALKNP---NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQV 208
+Y+ E A L E ++ P ++ L Y GG TLA+ +
Sbjct: 118 NYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLARSFI-----------I 166
Query: 209 VLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD 268
+ +SE+ + I+GE+ R RI Y+R + ++ L+N W +L
Sbjct: 167 CIQMISEAARFQYIEGEM---------------RTRIRYNRRSAPDPSVITLENSWGDLS 211
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 178 LLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGE 225
+L+YG G GK+ LAK VA +A S VS S V K GE
Sbjct: 72 ILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSSDLVSKWMGE 112
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 178 LLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGE 225
+L+YG G GK+ LAK VA +A S VS S V K GE
Sbjct: 63 ILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSSDLVSKWMGE 103
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 178 LLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGE 225
+L++G G GK+ LAK VA +A + F +S S V K GE
Sbjct: 48 ILLFGPPGTGKSYLAKAVATEANNSTFF------SISSSDLVSKWLGE 89
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 178 LLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES---------RDVRKIQGEIA 227
+++YG G GKT LAK VA + + F ++V SE+ + R + K+ GE A
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTSAT--FLRIVGSELIQKYLGDGPRLCRQIFKVAGENA 275
>pdb|3BJG|A Chain A, Structure Of Rivax: A Human Ricin Vaccine
Length = 268
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 29/120 (24%)
Query: 152 DYEAFESRASILNEIMDALKNP---NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQV 208
+Y+ E A L E ++ P ++ L Y GG TLA+ +
Sbjct: 123 NYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLARSFI-----------I 171
Query: 209 VLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD 268
+ +SE+ + I+GE+ R RI Y+R + ++ L+N W L
Sbjct: 172 CIQMISEAARFQYIEGEM---------------RTRIRYNRRSAPDPSVITLENSWGRLS 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,940,549
Number of Sequences: 62578
Number of extensions: 681252
Number of successful extensions: 1806
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1787
Number of HSP's gapped (non-prelim): 76
length of query: 610
length of database: 14,973,337
effective HSP length: 105
effective length of query: 505
effective length of database: 8,402,647
effective search space: 4243336735
effective search space used: 4243336735
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)