Query 007268
Match_columns 610
No_of_seqs 500 out of 3047
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 21:16:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.8E-61 3.9E-66 544.8 39.7 446 35-519 22-496 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 4.1E-44 8.9E-49 364.7 17.3 272 159-433 1-284 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.9E-35 4.2E-40 350.6 29.2 301 151-514 181-500 (1153)
4 PRK04841 transcriptional regul 99.6 3.1E-13 6.7E-18 159.5 24.8 294 150-514 10-330 (903)
5 PRK00411 cdc6 cell division co 99.3 3.5E-10 7.5E-15 120.5 25.5 243 153-410 29-305 (394)
6 TIGR03015 pepcterm_ATPase puta 99.3 3.6E-10 7.8E-15 113.8 23.2 183 172-357 40-242 (269)
7 PF01637 Arch_ATPase: Archaeal 99.3 6.4E-12 1.4E-16 123.4 9.3 193 156-352 1-233 (234)
8 COG2909 MalT ATP-dependent tra 99.3 3.3E-10 7.2E-15 123.6 22.5 294 150-514 15-336 (894)
9 TIGR02928 orc1/cdc6 family rep 99.2 3.7E-09 8.1E-14 111.4 26.1 243 154-411 15-298 (365)
10 PF05729 NACHT: NACHT domain 99.2 8.8E-11 1.9E-15 108.8 11.0 143 176-323 1-163 (166)
11 TIGR00635 ruvB Holliday juncti 99.1 5E-09 1.1E-13 107.6 19.9 248 153-425 3-265 (305)
12 PRK00080 ruvB Holliday junctio 99.1 4.2E-09 9E-14 109.1 18.3 250 151-425 22-286 (328)
13 COG3899 Predicted ATPase [Gene 99.0 1.3E-08 2.7E-13 117.1 17.0 263 155-426 1-334 (849)
14 COG2256 MGS1 ATPase related to 98.9 1.2E-08 2.6E-13 103.0 13.2 174 151-350 21-209 (436)
15 PRK13342 recombination factor 98.9 2E-08 4.4E-13 107.1 13.0 181 151-357 9-200 (413)
16 PRK12402 replication factor C 98.8 1.1E-07 2.5E-12 98.9 14.7 199 153-352 14-225 (337)
17 PTZ00112 origin recognition co 98.8 1.1E-06 2.4E-11 97.3 22.3 169 154-324 755-950 (1164)
18 PRK07003 DNA polymerase III su 98.8 5.9E-07 1.3E-11 98.9 20.3 185 151-357 13-225 (830)
19 PTZ00202 tuzin; Provisional 98.8 8.6E-07 1.9E-11 91.3 20.0 165 149-323 257-434 (550)
20 PRK06893 DNA replication initi 98.7 1.3E-07 2.7E-12 92.6 13.2 180 150-357 12-207 (229)
21 PRK14949 DNA polymerase III su 98.7 3.9E-07 8.4E-12 102.2 18.2 178 151-350 13-217 (944)
22 PRK00440 rfc replication facto 98.7 1.4E-06 3E-11 90.0 19.9 185 152-353 15-203 (319)
23 PRK14961 DNA polymerase III su 98.7 5.6E-07 1.2E-11 94.3 17.1 194 151-352 13-219 (363)
24 PRK14963 DNA polymerase III su 98.7 1.7E-06 3.6E-11 93.9 20.3 197 152-357 12-222 (504)
25 TIGR03420 DnaA_homol_Hda DnaA 98.6 2.2E-07 4.8E-12 90.9 11.9 175 154-356 15-204 (226)
26 PLN03025 replication factor C 98.6 7.5E-07 1.6E-11 91.8 16.3 185 151-351 10-198 (319)
27 COG3903 Predicted ATPase [Gene 98.6 3.7E-08 8E-13 100.1 6.2 234 174-419 13-258 (414)
28 PRK04195 replication factor C 98.6 9.8E-07 2.1E-11 96.2 17.7 243 151-432 11-270 (482)
29 COG1474 CDC6 Cdc6-related prot 98.6 4.6E-06 9.9E-11 86.8 21.3 197 155-353 18-238 (366)
30 PF13173 AAA_14: AAA domain 98.6 5.6E-08 1.2E-12 86.0 6.2 121 175-315 2-127 (128)
31 PRK05564 DNA polymerase III su 98.6 9E-07 1.9E-11 91.0 16.0 176 154-351 4-188 (313)
32 cd00009 AAA The AAA+ (ATPases 98.6 3.7E-07 8E-12 82.1 11.5 123 157-293 1-131 (151)
33 PRK14960 DNA polymerase III su 98.6 6.8E-07 1.5E-11 97.4 15.1 193 151-351 12-217 (702)
34 PF05496 RuvB_N: Holliday junc 98.6 1.3E-06 2.9E-11 82.7 15.1 179 150-357 20-225 (233)
35 PRK12323 DNA polymerase III su 98.6 6.8E-07 1.5E-11 97.1 14.5 200 151-353 13-225 (700)
36 PF13401 AAA_22: AAA domain; P 98.6 1.4E-07 3E-12 83.7 7.4 116 174-291 3-125 (131)
37 PRK06645 DNA polymerase III su 98.6 1.6E-06 3.5E-11 93.6 16.9 195 151-350 18-226 (507)
38 PRK09112 DNA polymerase III su 98.6 2.7E-06 5.9E-11 88.1 17.3 198 150-353 19-240 (351)
39 PRK07471 DNA polymerase III su 98.5 2.9E-06 6.3E-11 88.4 17.4 198 150-353 15-238 (365)
40 PRK14957 DNA polymerase III su 98.5 1.3E-06 2.7E-11 95.0 15.1 187 151-355 13-223 (546)
41 PRK14956 DNA polymerase III su 98.5 1.3E-06 2.9E-11 92.5 14.4 192 151-350 15-219 (484)
42 PRK14962 DNA polymerase III su 98.5 2.3E-06 5E-11 92.1 16.4 185 151-357 11-223 (472)
43 TIGR02903 spore_lon_C ATP-depe 98.5 7.9E-06 1.7E-10 91.2 21.2 203 152-356 152-398 (615)
44 KOG2028 ATPase related to the 98.5 6.1E-07 1.3E-11 89.1 10.4 174 153-348 137-331 (554)
45 PRK07940 DNA polymerase III su 98.5 2.8E-06 6E-11 89.3 15.5 186 154-353 5-213 (394)
46 PRK07994 DNA polymerase III su 98.5 1.5E-06 3.2E-11 96.0 14.1 195 151-353 13-220 (647)
47 PF13191 AAA_16: AAA ATPase do 98.5 4.2E-07 9E-12 85.8 8.4 48 155-202 1-51 (185)
48 PRK14951 DNA polymerase III su 98.5 3.1E-06 6.7E-11 93.3 15.8 198 151-353 13-225 (618)
49 TIGR02397 dnaX_nterm DNA polym 98.5 5.3E-06 1.1E-10 87.1 17.1 185 151-354 11-219 (355)
50 PRK13341 recombination factor 98.5 2E-06 4.4E-11 96.8 14.6 172 151-348 25-212 (725)
51 PRK14958 DNA polymerase III su 98.5 3E-06 6.4E-11 92.2 15.3 184 151-352 13-219 (509)
52 PRK08691 DNA polymerase III su 98.5 2.7E-06 5.9E-11 93.6 15.0 181 151-353 13-220 (709)
53 TIGR00678 holB DNA polymerase 98.5 4.6E-06 9.9E-11 79.1 14.8 159 165-348 3-186 (188)
54 PRK14955 DNA polymerase III su 98.5 2.7E-06 5.8E-11 90.3 14.5 200 152-352 14-227 (397)
55 PRK14964 DNA polymerase III su 98.4 5.1E-06 1.1E-10 89.1 15.7 182 151-350 10-214 (491)
56 PF14516 AAA_35: AAA-like doma 98.4 3.5E-05 7.5E-10 79.7 20.9 201 152-360 9-246 (331)
57 PRK05896 DNA polymerase III su 98.4 4.6E-06 1E-10 90.9 14.8 197 151-355 13-223 (605)
58 PRK14969 DNA polymerase III su 98.4 5.5E-06 1.2E-10 90.7 15.5 181 151-353 13-221 (527)
59 TIGR01242 26Sp45 26S proteasom 98.4 1.2E-05 2.5E-10 84.6 17.3 176 150-347 118-328 (364)
60 PF05621 TniB: Bacterial TniB 98.4 1.2E-05 2.6E-10 79.8 15.5 193 160-353 43-261 (302)
61 cd01128 rho_factor Transcripti 98.4 1E-06 2.3E-11 86.6 8.0 92 174-266 15-115 (249)
62 PRK14970 DNA polymerase III su 98.4 1.5E-05 3.3E-10 84.0 17.4 181 152-350 15-206 (367)
63 PRK08084 DNA replication initi 98.3 5.2E-06 1.1E-10 81.5 12.5 174 154-356 22-212 (235)
64 PRK08727 hypothetical protein; 98.3 8.3E-06 1.8E-10 80.0 13.7 171 153-351 18-202 (233)
65 PRK09111 DNA polymerase III su 98.3 1E-05 2.3E-10 89.3 15.7 199 151-354 21-234 (598)
66 PRK07764 DNA polymerase III su 98.3 9.5E-06 2.1E-10 92.6 15.7 177 152-350 13-218 (824)
67 PRK14959 DNA polymerase III su 98.3 9.9E-06 2.1E-10 88.8 15.1 199 152-358 14-226 (624)
68 TIGR03345 VI_ClpV1 type VI sec 98.3 5.9E-06 1.3E-10 95.4 13.5 182 151-346 184-389 (852)
69 PRK14952 DNA polymerase III su 98.3 1.5E-05 3.3E-10 87.5 15.8 197 151-355 10-222 (584)
70 PRK08903 DnaA regulatory inact 98.2 1.4E-05 3E-10 78.2 12.8 173 153-357 17-203 (227)
71 PRK08451 DNA polymerase III su 98.2 4.5E-05 9.8E-10 82.7 17.4 181 151-353 11-218 (535)
72 PRK14950 DNA polymerase III su 98.2 3.6E-05 7.9E-10 85.7 17.2 197 152-355 14-223 (585)
73 PRK09376 rho transcription ter 98.2 4.6E-06 1E-10 85.7 8.9 100 166-266 159-268 (416)
74 PRK14954 DNA polymerase III su 98.2 2.9E-05 6.2E-10 86.0 15.8 202 151-353 13-229 (620)
75 TIGR02639 ClpA ATP-dependent C 98.2 9.5E-06 2.1E-10 92.9 12.4 158 152-323 180-358 (731)
76 PRK06305 DNA polymerase III su 98.2 3.8E-05 8.2E-10 82.6 16.2 180 152-354 15-224 (451)
77 PRK03992 proteasome-activating 98.2 2.1E-05 4.6E-10 83.2 14.0 174 152-347 129-337 (389)
78 PRK14971 DNA polymerase III su 98.2 4.7E-05 1E-09 84.7 17.3 182 152-352 15-221 (614)
79 PRK09087 hypothetical protein; 98.2 2.2E-05 4.9E-10 76.4 13.1 144 175-357 44-199 (226)
80 PRK07133 DNA polymerase III su 98.2 3.2E-05 6.9E-10 86.2 15.5 182 151-354 15-221 (725)
81 PRK07399 DNA polymerase III su 98.2 0.00018 3.9E-09 73.6 19.3 197 154-354 4-222 (314)
82 PRK14953 DNA polymerase III su 98.2 6.5E-05 1.4E-09 81.4 16.9 181 152-354 14-221 (486)
83 PRK05642 DNA replication initi 98.1 3.4E-05 7.3E-10 75.7 13.2 154 176-357 46-212 (234)
84 PHA02544 44 clamp loader, smal 98.1 1.4E-05 3E-10 82.4 11.0 148 151-321 18-171 (316)
85 CHL00095 clpC Clp protease ATP 98.1 2.2E-05 4.8E-10 91.0 13.5 158 153-323 178-354 (821)
86 TIGR03689 pup_AAA proteasome A 98.1 6.1E-05 1.3E-09 81.2 15.1 163 150-325 178-380 (512)
87 KOG0989 Replication factor C, 98.1 3E-05 6.6E-10 76.0 11.4 185 150-347 32-224 (346)
88 PRK14965 DNA polymerase III su 98.1 5.7E-05 1.2E-09 83.8 15.1 197 151-355 13-223 (576)
89 PRK06647 DNA polymerase III su 98.1 0.0001 2.3E-09 81.1 16.7 194 151-352 13-219 (563)
90 PRK14948 DNA polymerase III su 98.1 0.00014 3E-09 81.1 17.2 197 151-353 13-222 (620)
91 KOG2227 Pre-initiation complex 98.0 0.00042 9.1E-09 71.9 19.2 206 152-358 148-373 (529)
92 TIGR02881 spore_V_K stage V sp 98.0 3.7E-05 8.1E-10 76.9 11.6 154 155-324 7-192 (261)
93 PRK05563 DNA polymerase III su 98.0 0.00018 3.9E-09 79.5 17.9 192 151-350 13-217 (559)
94 PRK14087 dnaA chromosomal repl 98.0 0.00015 3.2E-09 78.1 16.7 168 176-357 142-323 (450)
95 TIGR00767 rho transcription te 98.0 2.7E-05 5.9E-10 80.5 10.3 93 173-266 166-267 (415)
96 KOG0991 Replication factor C, 98.0 9.1E-05 2E-09 69.7 11.9 100 153-266 26-125 (333)
97 TIGR02880 cbbX_cfxQ probable R 98.0 0.00011 2.3E-09 74.4 13.2 132 177-324 60-209 (284)
98 PF00308 Bac_DnaA: Bacterial d 98.0 3.1E-05 6.7E-10 75.1 8.7 163 175-354 34-209 (219)
99 TIGR03346 chaperone_ClpB ATP-d 97.9 7.8E-05 1.7E-09 86.7 13.5 158 152-323 171-349 (852)
100 PF05673 DUF815: Protein of un 97.9 0.00043 9.2E-09 66.8 15.9 52 151-202 24-79 (249)
101 PRK10865 protein disaggregatio 97.9 6.2E-05 1.3E-09 87.3 12.3 158 152-323 176-354 (857)
102 CHL00181 cbbX CbbX; Provisiona 97.9 0.00016 3.6E-09 73.0 13.7 133 176-324 60-210 (287)
103 PRK05707 DNA polymerase III su 97.9 0.00019 4.2E-09 73.7 14.3 167 175-353 22-203 (328)
104 KOG2543 Origin recognition com 97.9 0.00056 1.2E-08 69.2 16.7 164 154-323 6-193 (438)
105 TIGR00362 DnaA chromosomal rep 97.9 0.00041 8.9E-09 74.1 16.9 180 176-372 137-337 (405)
106 COG1373 Predicted ATPase (AAA+ 97.9 0.00011 2.3E-09 77.9 12.1 138 158-319 21-163 (398)
107 PTZ00454 26S protease regulato 97.9 0.00032 7E-09 74.0 15.3 177 149-347 140-351 (398)
108 PRK11034 clpA ATP-dependent Cl 97.8 4E-05 8.7E-10 86.9 8.6 158 153-323 185-362 (758)
109 PRK11331 5-methylcytosine-spec 97.8 5.5E-05 1.2E-09 79.5 8.6 108 154-266 175-284 (459)
110 PTZ00361 26 proteosome regulat 97.8 0.00019 4E-09 76.4 12.5 177 149-347 178-389 (438)
111 PF00004 AAA: ATPase family as 97.8 7E-05 1.5E-09 66.1 7.9 69 178-266 1-70 (132)
112 PRK00149 dnaA chromosomal repl 97.8 0.0005 1.1E-08 74.4 16.1 180 176-372 149-349 (450)
113 smart00382 AAA ATPases associa 97.8 0.00011 2.3E-09 65.2 8.9 91 175-268 2-92 (148)
114 PRK14088 dnaA chromosomal repl 97.8 0.0012 2.6E-08 71.0 17.9 182 175-372 130-332 (440)
115 TIGR01241 FtsH_fam ATP-depende 97.8 0.00037 8E-09 76.4 14.2 201 150-372 51-295 (495)
116 PRK08769 DNA polymerase III su 97.7 0.0011 2.3E-08 67.8 15.7 178 161-353 11-208 (319)
117 CHL00176 ftsH cell division pr 97.7 0.00096 2.1E-08 74.5 16.2 171 153-345 182-386 (638)
118 PRK06871 DNA polymerase III su 97.7 0.0019 4E-08 66.1 17.1 176 162-350 10-200 (325)
119 PRK06620 hypothetical protein; 97.7 0.00022 4.8E-09 68.9 9.6 137 176-353 45-189 (214)
120 COG2255 RuvB Holliday junction 97.7 0.0068 1.5E-07 59.3 19.4 180 150-358 22-228 (332)
121 TIGR00763 lon ATP-dependent pr 97.7 0.0024 5.2E-08 73.8 19.5 158 154-323 320-505 (775)
122 TIGR00602 rad24 checkpoint pro 97.7 0.00022 4.8E-09 79.0 10.4 201 150-357 80-327 (637)
123 PRK08058 DNA polymerase III su 97.6 0.001 2.3E-08 68.7 14.7 161 155-322 6-181 (329)
124 COG1222 RPT1 ATP-dependent 26S 97.6 0.0048 1E-07 62.2 18.3 203 148-372 145-392 (406)
125 PRK06090 DNA polymerase III su 97.6 0.0041 8.9E-08 63.5 18.4 175 162-353 11-201 (319)
126 PRK14086 dnaA chromosomal repl 97.6 0.0024 5.2E-08 70.1 17.5 159 176-351 315-486 (617)
127 COG3267 ExeA Type II secretory 97.6 0.0053 1.1E-07 59.2 17.4 181 172-356 48-248 (269)
128 PF10443 RNA12: RNA12 protein; 97.6 0.0054 1.2E-07 63.9 18.2 199 159-364 1-290 (431)
129 CHL00195 ycf46 Ycf46; Provisio 97.5 0.00072 1.6E-08 73.1 12.1 175 153-347 227-429 (489)
130 COG0466 Lon ATP-dependent Lon 97.5 0.00084 1.8E-08 73.2 12.3 156 154-323 323-508 (782)
131 PRK10787 DNA-binding ATP-depen 97.5 0.0049 1.1E-07 70.8 19.0 158 154-323 322-506 (784)
132 PRK08181 transposase; Validate 97.5 0.0013 2.9E-08 65.5 12.5 78 168-265 101-178 (269)
133 PRK07993 DNA polymerase III su 97.5 0.0037 8.1E-08 64.5 15.8 176 162-350 10-201 (334)
134 COG2812 DnaX DNA polymerase II 97.5 0.0011 2.4E-08 71.2 12.1 190 151-348 13-215 (515)
135 KOG2004 Mitochondrial ATP-depe 97.5 0.0046 9.9E-08 67.5 16.5 157 153-323 410-596 (906)
136 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0034 7.4E-08 62.7 14.5 56 161-223 9-64 (262)
137 PF13177 DNA_pol3_delta2: DNA 97.4 0.00086 1.9E-08 61.7 9.3 137 158-311 1-162 (162)
138 PRK10536 hypothetical protein; 97.4 0.0017 3.8E-08 63.4 11.5 57 152-210 53-109 (262)
139 PRK12422 chromosomal replicati 97.4 0.0018 4E-08 69.4 12.6 152 176-346 142-306 (445)
140 PRK08116 hypothetical protein; 97.4 0.00075 1.6E-08 67.5 8.8 102 176-292 115-221 (268)
141 KOG0731 AAA+-type ATPase conta 97.4 0.0032 6.9E-08 70.1 14.3 176 154-350 311-521 (774)
142 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0016 3.5E-08 75.5 12.4 106 154-266 566-680 (852)
143 PRK12608 transcription termina 97.3 0.002 4.4E-08 66.4 11.7 102 163-265 120-231 (380)
144 COG1223 Predicted ATPase (AAA+ 97.3 0.0022 4.9E-08 61.6 10.4 172 153-346 120-318 (368)
145 COG0593 DnaA ATPase involved i 97.2 0.0043 9.3E-08 64.8 13.2 180 175-374 113-315 (408)
146 KOG0743 AAA+-type ATPase [Post 97.2 0.044 9.6E-07 57.2 20.3 153 176-360 236-417 (457)
147 TIGR01243 CDC48 AAA family ATP 97.2 0.0032 6.9E-08 72.5 13.6 173 153-347 452-657 (733)
148 PRK12727 flagellar biosynthesi 97.2 0.014 3E-07 63.0 17.2 88 175-264 350-438 (559)
149 PRK06964 DNA polymerase III su 97.2 0.013 2.9E-07 60.4 16.6 104 241-353 115-225 (342)
150 TIGR02639 ClpA ATP-dependent C 97.2 0.0026 5.7E-08 73.1 12.7 103 154-266 454-565 (731)
151 PRK08118 topology modulation p 97.2 0.0002 4.4E-09 66.3 3.0 35 176-210 2-37 (167)
152 TIGR02237 recomb_radB DNA repa 97.2 0.0019 4.2E-08 62.1 9.3 48 174-224 11-58 (209)
153 TIGR01243 CDC48 AAA family ATP 97.2 0.0029 6.3E-08 72.9 12.2 174 152-347 176-381 (733)
154 PLN00020 ribulose bisphosphate 97.2 0.006 1.3E-07 62.5 12.7 150 173-348 146-333 (413)
155 PHA00729 NTP-binding motif con 97.1 0.0022 4.9E-08 61.6 8.9 36 165-200 7-42 (226)
156 COG0470 HolB ATPase involved i 97.1 0.0046 1E-07 63.8 12.1 140 156-311 3-169 (325)
157 COG0542 clpA ATP-binding subun 97.1 0.0013 2.8E-08 73.6 8.3 158 153-323 169-346 (786)
158 PF04665 Pox_A32: Poxvirus A32 97.1 0.0013 2.7E-08 64.0 7.1 36 176-213 14-49 (241)
159 TIGR02902 spore_lonB ATP-depen 97.1 0.0023 5E-08 70.5 10.0 47 153-199 64-110 (531)
160 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0033 7.1E-08 61.8 10.1 90 174-264 18-125 (235)
161 PF00448 SRP54: SRP54-type pro 97.1 0.0031 6.6E-08 60.0 9.5 87 175-263 1-92 (196)
162 COG0542 clpA ATP-binding subun 97.1 0.025 5.4E-07 63.7 17.8 105 154-266 491-605 (786)
163 KOG0733 Nuclear AAA ATPase (VC 97.1 0.016 3.5E-07 62.2 15.4 172 153-346 189-395 (802)
164 TIGR02012 tigrfam_recA protein 97.1 0.0026 5.6E-08 64.8 9.1 84 174-264 54-143 (321)
165 PRK04132 replication factor C 97.0 0.015 3.3E-07 66.6 15.6 155 183-353 574-731 (846)
166 KOG0739 AAA+-type ATPase [Post 97.0 0.0082 1.8E-07 58.9 11.4 171 154-346 133-334 (439)
167 cd00983 recA RecA is a bacter 97.0 0.0031 6.8E-08 64.2 8.9 84 174-264 54-143 (325)
168 PRK06526 transposase; Provisio 97.0 0.0009 2E-08 66.3 4.9 75 174-266 97-171 (254)
169 PRK09354 recA recombinase A; P 97.0 0.0036 7.9E-08 64.3 9.4 84 174-264 59-148 (349)
170 PF05659 RPW8: Arabidopsis bro 97.0 0.015 3.2E-07 52.2 12.2 110 2-127 3-113 (147)
171 KOG1514 Origin recognition com 97.0 0.042 9E-07 60.2 17.5 198 154-354 396-622 (767)
172 TIGR03346 chaperone_ClpB ATP-d 96.9 0.003 6.6E-08 73.7 9.6 106 154-266 565-679 (852)
173 PRK08939 primosomal protein Dn 96.9 0.0028 6.2E-08 64.5 8.1 117 158-292 135-261 (306)
174 PRK07261 topology modulation p 96.9 0.0028 6E-08 59.0 7.4 34 177-210 2-36 (171)
175 KOG0735 AAA+-type ATPase [Post 96.9 0.005 1.1E-07 67.1 10.0 159 174-351 430-614 (952)
176 KOG0734 AAA+-type ATPase conta 96.9 0.0034 7.4E-08 66.1 8.4 93 154-266 304-408 (752)
177 PRK12377 putative replication 96.9 0.0047 1E-07 60.8 9.1 74 174-264 100-173 (248)
178 KOG1969 DNA replication checkp 96.9 0.0022 4.8E-08 70.0 7.2 76 173-266 324-399 (877)
179 PRK11034 clpA ATP-dependent Cl 96.9 0.0063 1.4E-07 69.4 11.0 102 155-266 459-569 (758)
180 KOG2035 Replication factor C, 96.8 0.0084 1.8E-07 58.3 10.0 229 154-398 13-282 (351)
181 COG1484 DnaC DNA replication p 96.8 0.0058 1.3E-07 60.6 9.4 81 166-265 98-178 (254)
182 KOG0730 AAA+-type ATPase [Post 96.8 0.01 2.2E-07 64.5 11.6 154 153-326 433-618 (693)
183 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0017 3.7E-08 66.7 5.5 47 155-201 52-104 (361)
184 KOG0733 Nuclear AAA ATPase (VC 96.8 0.027 5.9E-07 60.6 14.4 131 174-324 544-693 (802)
185 PRK10865 protein disaggregatio 96.8 0.0045 9.8E-08 72.1 9.6 106 154-266 568-682 (857)
186 KOG0741 AAA+-type ATPase [Post 96.8 0.025 5.4E-07 59.8 13.8 160 173-358 536-717 (744)
187 PF13207 AAA_17: AAA domain; P 96.8 0.0012 2.6E-08 57.4 3.7 24 177-200 1-24 (121)
188 PRK14722 flhF flagellar biosyn 96.8 0.0056 1.2E-07 63.7 9.2 89 174-264 136-225 (374)
189 CHL00095 clpC Clp protease ATP 96.8 0.0061 1.3E-07 70.9 10.5 106 154-266 509-623 (821)
190 PRK09183 transposase/IS protei 96.8 0.0016 3.5E-08 64.8 5.0 27 175-201 102-128 (259)
191 PTZ00494 tuzin-like protein; P 96.8 0.093 2E-06 54.8 17.5 164 150-323 367-544 (664)
192 PF08423 Rad51: Rad51; InterP 96.8 0.0083 1.8E-07 59.6 9.8 89 175-264 38-143 (256)
193 TIGR03499 FlhF flagellar biosy 96.7 0.0073 1.6E-07 61.0 9.4 88 174-263 193-281 (282)
194 PRK08699 DNA polymerase III su 96.7 0.013 2.8E-07 60.4 11.2 166 174-349 20-202 (325)
195 cd01393 recA_like RecA is a b 96.7 0.0077 1.7E-07 58.7 9.2 55 174-229 18-76 (226)
196 TIGR02238 recomb_DMC1 meiotic 96.7 0.0076 1.6E-07 61.6 9.3 90 174-264 95-201 (313)
197 PF01695 IstB_IS21: IstB-like 96.7 0.0075 1.6E-07 56.4 8.5 75 174-266 46-120 (178)
198 cd01120 RecA-like_NTPases RecA 96.7 0.013 2.7E-07 53.5 9.9 40 177-218 1-40 (165)
199 PRK09361 radB DNA repair and r 96.7 0.0083 1.8E-07 58.5 9.0 45 174-221 22-66 (225)
200 KOG2228 Origin recognition com 96.7 0.029 6.3E-07 56.2 12.5 169 154-324 24-220 (408)
201 COG2607 Predicted ATPase (AAA+ 96.7 0.015 3.2E-07 55.6 10.0 116 151-292 57-183 (287)
202 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.013 2.9E-07 57.5 10.2 48 174-225 20-67 (237)
203 PRK06696 uridine kinase; Valid 96.6 0.003 6.6E-08 61.5 5.5 44 158-201 2-48 (223)
204 PRK07952 DNA replication prote 96.6 0.014 3.1E-07 57.3 10.1 89 162-266 84-174 (244)
205 PRK00771 signal recognition pa 96.6 0.083 1.8E-06 56.5 16.5 87 174-264 94-185 (437)
206 COG0464 SpoVK ATPases of the A 96.6 0.035 7.6E-07 61.0 14.3 152 174-345 275-445 (494)
207 PRK05541 adenylylsulfate kinas 96.6 0.0064 1.4E-07 56.8 7.1 36 174-211 6-41 (176)
208 KOG0736 Peroxisome assembly fa 96.5 0.097 2.1E-06 58.0 16.6 99 148-266 666-776 (953)
209 PRK11889 flhF flagellar biosyn 96.5 0.024 5.1E-07 59.0 11.2 89 174-264 240-330 (436)
210 PRK10733 hflB ATP-dependent me 96.5 0.021 4.5E-07 64.6 11.9 149 176-346 186-356 (644)
211 PLN03187 meiotic recombination 96.5 0.015 3.4E-07 59.9 9.9 59 174-233 125-187 (344)
212 PRK04296 thymidine kinase; Pro 96.5 0.0044 9.4E-08 58.7 5.4 111 176-294 3-118 (190)
213 TIGR02236 recomb_radA DNA repa 96.4 0.021 4.6E-07 58.6 10.5 59 174-233 94-156 (310)
214 PRK07132 DNA polymerase III su 96.4 0.14 3E-06 52.0 15.9 167 163-352 5-184 (299)
215 TIGR01425 SRP54_euk signal rec 96.4 0.23 5.1E-06 52.7 18.1 38 174-213 99-136 (429)
216 PRK09270 nucleoside triphospha 96.4 0.028 6.1E-07 55.0 10.7 30 173-202 31-60 (229)
217 PF00154 RecA: recA bacterial 96.4 0.03 6.6E-07 57.0 11.0 86 174-266 52-143 (322)
218 PRK06921 hypothetical protein; 96.3 0.017 3.7E-07 57.8 8.9 71 174-263 116-186 (266)
219 COG1419 FlhF Flagellar GTP-bin 96.3 0.034 7.4E-07 57.7 11.1 100 163-264 187-291 (407)
220 PRK04301 radA DNA repair and r 96.3 0.024 5.2E-07 58.4 10.3 58 174-232 101-162 (317)
221 PRK04328 hypothetical protein; 96.3 0.019 4.1E-07 56.9 9.0 41 174-216 22-62 (249)
222 cd01394 radB RadB. The archaea 96.3 0.018 4E-07 55.7 8.8 43 174-218 18-60 (218)
223 PRK12723 flagellar biosynthesi 96.3 0.031 6.7E-07 58.7 10.8 89 174-264 173-264 (388)
224 COG1102 Cmk Cytidylate kinase 96.3 0.015 3.1E-07 52.2 7.0 45 177-234 2-46 (179)
225 COG1875 NYN ribonuclease and A 96.2 0.015 3.3E-07 58.8 7.9 134 155-292 225-388 (436)
226 TIGR02239 recomb_RAD51 DNA rep 96.2 0.022 4.7E-07 58.5 9.3 59 174-233 95-157 (316)
227 PTZ00035 Rad51 protein; Provis 96.2 0.03 6.5E-07 57.9 10.3 59 174-233 117-179 (337)
228 PRK08533 flagellar accessory p 96.2 0.029 6.3E-07 54.8 9.6 54 174-232 23-76 (230)
229 COG0468 RecA RecA/RadA recombi 96.2 0.034 7.4E-07 55.4 10.1 88 174-264 59-151 (279)
230 KOG0735 AAA+-type ATPase [Post 96.2 0.38 8.3E-06 53.0 18.4 152 176-349 702-872 (952)
231 cd01133 F1-ATPase_beta F1 ATP 96.2 0.043 9.2E-07 54.6 10.7 91 174-265 68-174 (274)
232 PRK12726 flagellar biosynthesi 96.2 0.033 7.1E-07 57.7 10.2 90 174-265 205-296 (407)
233 COG1066 Sms Predicted ATP-depe 96.2 0.026 5.7E-07 58.2 9.3 96 164-265 80-179 (456)
234 cd01121 Sms Sms (bacterial rad 96.2 0.021 4.6E-07 59.8 9.0 85 175-264 82-168 (372)
235 TIGR01817 nifA Nif-specific re 96.2 0.094 2E-06 58.2 14.6 64 151-216 193-258 (534)
236 PLN03186 DNA repair protein RA 96.2 0.022 4.7E-07 58.9 8.8 59 174-233 122-184 (342)
237 cd01124 KaiC KaiC is a circadi 96.1 0.019 4.1E-07 54.0 7.8 45 177-225 1-45 (187)
238 PRK06067 flagellar accessory p 96.1 0.038 8.2E-07 54.2 10.1 86 174-264 24-130 (234)
239 COG2884 FtsE Predicted ATPase 96.1 0.024 5.2E-07 52.3 7.8 28 174-201 27-54 (223)
240 TIGR00959 ffh signal recogniti 96.1 0.063 1.4E-06 57.2 12.2 59 174-233 98-157 (428)
241 PRK13531 regulatory ATPase Rav 96.1 0.0098 2.1E-07 63.5 6.0 51 154-206 20-70 (498)
242 TIGR00554 panK_bact pantothena 96.1 0.038 8.3E-07 55.7 9.9 28 173-200 60-87 (290)
243 cd03115 SRP The signal recogni 96.1 0.033 7.3E-07 51.7 9.0 87 177-265 2-93 (173)
244 PF14532 Sigma54_activ_2: Sigm 96.1 0.0025 5.5E-08 56.9 1.3 45 157-201 1-47 (138)
245 KOG0728 26S proteasome regulat 96.1 0.15 3.3E-06 48.9 13.1 132 173-324 179-332 (404)
246 COG0541 Ffh Signal recognition 96.0 0.76 1.6E-05 48.2 19.2 59 174-234 99-158 (451)
247 PRK15455 PrkA family serine pr 96.0 0.0088 1.9E-07 64.8 5.4 49 153-201 75-129 (644)
248 PRK10867 signal recognition pa 96.0 0.055 1.2E-06 57.7 11.4 28 174-201 99-126 (433)
249 PF10236 DAP3: Mitochondrial r 96.0 0.36 7.9E-06 49.4 17.0 47 304-350 258-306 (309)
250 PRK06547 hypothetical protein; 96.0 0.01 2.2E-07 55.2 5.1 35 166-200 6-40 (172)
251 PRK14974 cell division protein 96.0 0.068 1.5E-06 55.1 11.6 90 174-265 139-233 (336)
252 TIGR02858 spore_III_AA stage I 96.0 0.037 8.1E-07 55.2 9.4 116 172-294 108-231 (270)
253 PF07728 AAA_5: AAA domain (dy 96.0 0.018 3.8E-07 51.4 6.5 42 178-224 2-43 (139)
254 PRK12724 flagellar biosynthesi 96.0 0.023 4.9E-07 59.8 8.0 85 175-263 223-308 (432)
255 cd02025 PanK Pantothenate kina 96.0 0.036 7.9E-07 53.7 9.1 41 177-217 1-41 (220)
256 PRK07667 uridine kinase; Provi 96.0 0.017 3.7E-07 54.8 6.7 38 164-201 4-43 (193)
257 PF12061 DUF3542: Protein of u 95.9 0.032 7E-07 55.0 8.2 77 16-94 297-374 (402)
258 COG1618 Predicted nucleotide k 95.9 0.0098 2.1E-07 53.3 4.2 29 175-203 5-33 (179)
259 PF13238 AAA_18: AAA domain; P 95.9 0.007 1.5E-07 52.9 3.4 22 178-199 1-22 (129)
260 PTZ00301 uridine kinase; Provi 95.9 0.022 4.9E-07 54.6 7.0 26 175-200 3-28 (210)
261 PRK09519 recA DNA recombinatio 95.9 0.036 7.9E-07 62.8 9.6 84 174-264 59-148 (790)
262 TIGR01359 UMP_CMP_kin_fam UMP- 95.9 0.021 4.5E-07 53.6 6.7 24 177-200 1-24 (183)
263 KOG0729 26S proteasome regulat 95.9 0.054 1.2E-06 52.4 9.2 95 151-265 174-281 (435)
264 KOG0652 26S proteasome regulat 95.9 0.31 6.8E-06 47.2 14.3 55 146-200 163-230 (424)
265 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.038 8.2E-07 55.1 8.7 41 174-216 35-75 (259)
266 TIGR00064 ftsY signal recognit 95.8 0.067 1.5E-06 53.6 10.5 89 174-264 71-164 (272)
267 PRK05703 flhF flagellar biosyn 95.8 0.053 1.1E-06 58.0 10.2 86 175-263 221-308 (424)
268 TIGR02974 phageshock_pspF psp 95.8 0.06 1.3E-06 55.6 10.1 57 157-215 2-60 (329)
269 PF13671 AAA_33: AAA domain; P 95.7 0.0092 2E-07 53.4 3.6 24 177-200 1-24 (143)
270 COG1703 ArgK Putative periplas 95.7 0.019 4.1E-07 56.8 5.9 60 165-224 39-100 (323)
271 cd01131 PilT Pilus retraction 95.7 0.017 3.6E-07 55.1 5.5 109 176-294 2-111 (198)
272 PF01583 APS_kinase: Adenylyls 95.7 0.017 3.8E-07 52.3 5.1 36 175-212 2-37 (156)
273 PF00485 PRK: Phosphoribulokin 95.7 0.0099 2.2E-07 56.5 3.7 26 177-202 1-26 (194)
274 COG4608 AppF ABC-type oligopep 95.7 0.051 1.1E-06 53.3 8.5 118 174-296 38-174 (268)
275 PF13481 AAA_25: AAA domain; P 95.6 0.07 1.5E-06 50.4 9.5 41 176-216 33-81 (193)
276 PRK14721 flhF flagellar biosyn 95.6 0.076 1.6E-06 56.3 10.4 88 174-263 190-278 (420)
277 PRK08233 hypothetical protein; 95.6 0.01 2.2E-07 55.6 3.6 26 175-200 3-28 (182)
278 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.044 9.5E-07 49.9 7.5 116 176-293 3-139 (159)
279 PRK05917 DNA polymerase III su 95.6 0.26 5.6E-06 49.5 13.5 129 163-310 6-154 (290)
280 PF03308 ArgK: ArgK protein; 95.6 0.027 5.9E-07 54.9 6.3 56 164-219 16-73 (266)
281 PRK05439 pantothenate kinase; 95.6 0.1 2.3E-06 53.0 10.8 81 173-255 84-166 (311)
282 TIGR02655 circ_KaiC circadian 95.6 0.053 1.2E-06 59.2 9.4 95 165-264 251-363 (484)
283 PRK06762 hypothetical protein; 95.6 0.012 2.5E-07 54.4 3.6 25 175-199 2-26 (166)
284 PRK05480 uridine/cytidine kina 95.6 0.013 2.8E-07 56.5 4.0 27 173-199 4-30 (209)
285 PRK06835 DNA replication prote 95.5 0.081 1.8E-06 54.5 10.0 37 175-213 183-219 (329)
286 PRK13765 ATP-dependent proteas 95.5 0.026 5.6E-07 63.1 6.8 79 150-232 27-105 (637)
287 COG0563 Adk Adenylate kinase a 95.5 0.024 5.2E-07 52.9 5.6 25 177-201 2-26 (178)
288 KOG0744 AAA+-type ATPase [Post 95.5 0.05 1.1E-06 54.3 7.7 28 175-202 177-204 (423)
289 PRK11608 pspF phage shock prot 95.5 0.034 7.3E-07 57.5 7.0 60 154-215 6-67 (326)
290 PRK11823 DNA repair protein Ra 95.5 0.041 9E-07 59.3 7.9 85 175-264 80-166 (446)
291 cd02117 NifH_like This family 95.5 0.016 3.4E-07 56.0 4.3 26 176-201 1-26 (212)
292 COG0194 Gmk Guanylate kinase [ 95.5 0.07 1.5E-06 49.3 8.2 25 175-199 4-28 (191)
293 PF06745 KaiC: KaiC; InterPro 95.5 0.024 5.3E-07 55.2 5.7 87 174-264 18-125 (226)
294 cd02019 NK Nucleoside/nucleoti 95.5 0.012 2.7E-07 45.5 2.9 23 177-199 1-23 (69)
295 PRK06995 flhF flagellar biosyn 95.5 0.072 1.6E-06 57.4 9.6 88 175-264 256-344 (484)
296 PF00006 ATP-synt_ab: ATP synt 95.5 0.056 1.2E-06 52.0 7.9 86 175-264 15-115 (215)
297 PRK14723 flhF flagellar biosyn 95.5 0.11 2.5E-06 58.7 11.5 59 175-233 185-244 (767)
298 cd00544 CobU Adenosylcobinamid 95.4 0.064 1.4E-06 49.6 8.0 80 178-263 2-82 (169)
299 PRK14527 adenylate kinase; Pro 95.4 0.061 1.3E-06 50.9 8.1 29 173-201 4-32 (191)
300 TIGR00235 udk uridine kinase. 95.4 0.015 3.3E-07 55.9 4.0 28 173-200 4-31 (207)
301 PRK15429 formate hydrogenlyase 95.4 0.054 1.2E-06 62.0 8.9 61 153-215 375-437 (686)
302 TIGR00416 sms DNA repair prote 95.3 0.063 1.4E-06 58.0 8.7 87 174-265 93-181 (454)
303 TIGR03881 KaiC_arch_4 KaiC dom 95.3 0.14 3.1E-06 49.9 10.6 41 174-216 19-59 (229)
304 COG0465 HflB ATP-dependent Zn 95.3 0.19 4E-06 55.3 12.1 200 152-373 148-391 (596)
305 PRK10463 hydrogenase nickel in 95.3 0.12 2.6E-06 51.9 9.8 94 166-265 95-195 (290)
306 PRK00131 aroK shikimate kinase 95.2 0.018 3.8E-07 53.5 3.7 27 174-200 3-29 (175)
307 PRK03839 putative kinase; Prov 95.2 0.017 3.6E-07 54.2 3.5 24 177-200 2-25 (180)
308 TIGR00708 cobA cob(I)alamin ad 95.2 0.11 2.5E-06 47.8 8.7 118 175-293 5-141 (173)
309 COG3640 CooC CO dehydrogenase 95.2 0.039 8.6E-07 52.6 5.8 51 177-235 2-52 (255)
310 PRK13236 nitrogenase reductase 95.2 0.026 5.7E-07 57.5 5.0 44 172-217 3-46 (296)
311 PF13245 AAA_19: Part of AAA d 95.1 0.049 1.1E-06 43.0 5.4 25 174-198 9-33 (76)
312 TIGR01360 aden_kin_iso1 adenyl 95.1 0.019 4.1E-07 54.0 3.6 26 174-199 2-27 (188)
313 cd01135 V_A-ATPase_B V/A-type 95.1 0.18 3.8E-06 50.1 10.4 93 174-266 68-178 (276)
314 CHL00206 ycf2 Ycf2; Provisiona 95.1 0.15 3.2E-06 62.4 11.4 28 174-201 1629-1656(2281)
315 PRK13235 nifH nitrogenase redu 95.1 0.024 5.2E-07 57.1 4.4 41 176-218 2-42 (274)
316 PRK13232 nifH nitrogenase redu 95.1 0.024 5.2E-07 57.0 4.3 39 176-216 2-40 (273)
317 TIGR00764 lon_rel lon-related 95.0 0.058 1.3E-06 60.4 7.6 77 152-232 16-92 (608)
318 PRK04040 adenylate kinase; Pro 95.0 0.022 4.8E-07 53.7 3.7 26 175-200 2-27 (188)
319 COG0467 RAD55 RecA-superfamily 95.0 0.031 6.8E-07 55.8 5.0 56 173-233 21-76 (260)
320 PF00910 RNA_helicase: RNA hel 95.0 0.017 3.7E-07 49.0 2.7 24 178-201 1-24 (107)
321 PF13086 AAA_11: AAA domain; P 95.0 0.041 9E-07 53.4 5.8 34 164-199 8-41 (236)
322 PRK09435 membrane ATPase/prote 95.0 0.11 2.4E-06 53.4 8.9 38 165-202 44-83 (332)
323 PF12775 AAA_7: P-loop contain 95.0 0.022 4.8E-07 57.1 3.7 86 165-265 24-111 (272)
324 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.026 5.6E-07 54.5 4.1 24 175-198 29-52 (213)
325 COG1428 Deoxynucleoside kinase 95.0 0.023 5E-07 53.4 3.5 27 175-201 4-30 (216)
326 PF03215 Rad17: Rad17 cell cyc 94.9 0.036 7.8E-07 60.5 5.5 55 154-212 19-78 (519)
327 TIGR00750 lao LAO/AO transport 94.9 0.096 2.1E-06 53.5 8.4 30 173-202 32-61 (300)
328 PRK12597 F0F1 ATP synthase sub 94.9 0.15 3.3E-06 54.6 10.0 91 174-265 142-248 (461)
329 cd03247 ABCC_cytochrome_bd The 94.9 0.08 1.7E-06 49.4 7.2 27 174-200 27-53 (178)
330 COG0572 Udk Uridine kinase [Nu 94.9 0.026 5.6E-07 53.8 3.8 29 174-202 7-35 (218)
331 PRK00625 shikimate kinase; Pro 94.9 0.023 4.9E-07 52.8 3.3 24 177-200 2-25 (173)
332 PF02562 PhoH: PhoH-like prote 94.9 0.03 6.4E-07 53.3 4.1 49 161-211 7-55 (205)
333 cd01125 repA Hexameric Replica 94.9 0.14 3E-06 50.4 9.1 87 177-263 3-120 (239)
334 PF00625 Guanylate_kin: Guanyl 94.8 0.035 7.6E-07 52.2 4.5 38 175-214 2-39 (183)
335 PRK05022 anaerobic nitric oxid 94.8 0.079 1.7E-06 58.4 7.9 62 153-216 186-249 (509)
336 PF08433 KTI12: Chromatin asso 94.8 0.077 1.7E-06 53.0 7.1 26 176-201 2-27 (270)
337 PRK13768 GTPase; Provisional 94.8 0.14 3.1E-06 50.7 9.0 36 176-213 3-38 (253)
338 KOG0727 26S proteasome regulat 94.8 0.2 4.3E-06 48.2 9.3 74 173-266 187-260 (408)
339 cd01122 GP4d_helicase GP4d_hel 94.8 0.22 4.8E-06 49.9 10.5 52 175-229 30-81 (271)
340 PRK13230 nitrogenase reductase 94.8 0.035 7.6E-07 56.0 4.7 42 176-219 2-43 (279)
341 cd00227 CPT Chloramphenicol (C 94.8 0.027 5.8E-07 52.6 3.5 25 176-200 3-27 (175)
342 PF07726 AAA_3: ATPase family 94.8 0.021 4.6E-07 49.6 2.5 25 178-202 2-26 (131)
343 PF03205 MobB: Molybdopterin g 94.8 0.031 6.7E-07 50.0 3.7 39 176-215 1-39 (140)
344 PRK00889 adenylylsulfate kinas 94.7 0.033 7.1E-07 51.9 4.1 28 174-201 3-30 (175)
345 COG0714 MoxR-like ATPases [Gen 94.7 0.073 1.6E-06 55.1 7.0 64 155-225 25-88 (329)
346 COG1121 ZnuC ABC-type Mn/Zn tr 94.7 0.11 2.4E-06 50.8 7.7 25 175-199 30-54 (254)
347 PHA02774 E1; Provisional 94.7 0.078 1.7E-06 57.7 7.2 50 162-215 420-470 (613)
348 cd03214 ABC_Iron-Siderophores_ 94.7 0.11 2.3E-06 48.7 7.4 117 174-294 24-160 (180)
349 TIGR00390 hslU ATP-dependent p 94.7 0.088 1.9E-06 55.3 7.3 48 154-201 12-73 (441)
350 PRK08927 fliI flagellum-specif 94.7 0.24 5.1E-06 52.8 10.6 88 174-265 157-259 (442)
351 KOG1532 GTPase XAB1, interacts 94.7 0.038 8.2E-07 53.7 4.2 29 174-202 18-46 (366)
352 PRK05342 clpX ATP-dependent pr 94.7 0.075 1.6E-06 56.5 7.0 46 155-200 72-133 (412)
353 TIGR00150 HI0065_YjeE ATPase, 94.7 0.056 1.2E-06 47.6 5.0 28 174-201 21-48 (133)
354 PRK08972 fliI flagellum-specif 94.7 0.17 3.6E-06 53.8 9.4 88 174-265 161-263 (444)
355 TIGR03305 alt_F1F0_F1_bet alte 94.7 0.2 4.2E-06 53.5 10.0 91 174-265 137-243 (449)
356 TIGR01069 mutS2 MutS2 family p 94.7 0.03 6.4E-07 64.4 4.2 25 174-198 321-345 (771)
357 COG0003 ArsA Predicted ATPase 94.6 0.063 1.4E-06 54.8 6.1 49 175-225 2-50 (322)
358 cd03216 ABC_Carb_Monos_I This 94.6 0.043 9.4E-07 50.5 4.5 114 174-294 25-144 (163)
359 PF06309 Torsin: Torsin; Inte 94.6 0.076 1.6E-06 46.0 5.6 45 155-199 26-77 (127)
360 PRK07276 DNA polymerase III su 94.6 1.2 2.6E-05 44.9 14.9 151 161-321 9-173 (290)
361 TIGR02655 circ_KaiC circadian 94.6 0.16 3.5E-06 55.5 9.5 86 174-263 20-129 (484)
362 PTZ00088 adenylate kinase 1; P 94.6 0.038 8.3E-07 53.8 4.2 24 177-200 8-31 (229)
363 PF06068 TIP49: TIP49 C-termin 94.6 0.053 1.1E-06 55.6 5.2 53 153-205 23-80 (398)
364 TIGR01650 PD_CobS cobaltochela 94.6 0.14 3.1E-06 52.1 8.3 61 154-221 45-105 (327)
365 TIGR02322 phosphon_PhnN phosph 94.6 0.03 6.6E-07 52.3 3.4 25 176-200 2-26 (179)
366 PRK09302 circadian clock prote 94.6 0.2 4.3E-06 55.3 10.2 86 174-264 272-373 (509)
367 PF02374 ArsA_ATPase: Anion-tr 94.6 0.059 1.3E-06 55.0 5.7 45 176-222 2-46 (305)
368 PF05970 PIF1: PIF1-like helic 94.5 0.088 1.9E-06 55.3 7.1 99 162-265 9-113 (364)
369 PRK13233 nifH nitrogenase redu 94.5 0.041 8.9E-07 55.4 4.4 43 176-219 3-45 (275)
370 PRK14529 adenylate kinase; Pro 94.5 0.15 3.2E-06 49.4 7.9 84 178-266 3-88 (223)
371 cd02021 GntK Gluconate kinase 94.5 0.027 5.9E-07 50.9 2.8 23 177-199 1-23 (150)
372 PRK06217 hypothetical protein; 94.5 0.03 6.5E-07 52.7 3.1 34 177-211 3-38 (183)
373 COG1224 TIP49 DNA helicase TIP 94.5 0.08 1.7E-06 53.6 6.1 55 152-206 37-96 (450)
374 TIGR02030 BchI-ChlI magnesium 94.5 0.061 1.3E-06 55.5 5.6 47 153-199 3-49 (337)
375 cd03223 ABCD_peroxisomal_ALDP 94.5 0.19 4E-06 46.4 8.3 27 174-200 26-52 (166)
376 cd02020 CMPK Cytidine monophos 94.4 0.03 6.5E-07 50.2 2.9 24 177-200 1-24 (147)
377 COG3598 RepA RecA-family ATPas 94.4 0.11 2.4E-06 51.8 6.9 58 177-234 91-157 (402)
378 PRK09280 F0F1 ATP synthase sub 94.4 0.28 6E-06 52.5 10.4 91 174-265 143-249 (463)
379 cd02023 UMPK Uridine monophosp 94.4 0.028 6E-07 53.6 2.7 23 177-199 1-23 (198)
380 PRK10751 molybdopterin-guanine 94.4 0.047 1E-06 50.5 4.1 29 174-202 5-33 (173)
381 PRK10416 signal recognition pa 94.4 0.34 7.3E-06 49.8 10.7 38 174-213 113-150 (318)
382 PRK13407 bchI magnesium chelat 94.4 0.053 1.1E-06 55.9 4.8 47 153-199 7-53 (334)
383 TIGR03880 KaiC_arch_3 KaiC dom 94.4 0.19 4.1E-06 48.9 8.6 41 174-216 15-55 (224)
384 cd02024 NRK1 Nicotinamide ribo 94.3 0.031 6.7E-07 52.6 2.8 23 177-199 1-23 (187)
385 PRK14528 adenylate kinase; Pro 94.3 0.15 3.2E-06 48.1 7.5 25 176-200 2-26 (186)
386 cd02028 UMPK_like Uridine mono 94.3 0.045 9.7E-07 51.3 3.9 25 177-201 1-25 (179)
387 cd02029 PRK_like Phosphoribulo 94.3 0.14 3.1E-06 50.5 7.4 76 177-254 1-84 (277)
388 PRK11388 DNA-binding transcrip 94.3 0.4 8.6E-06 54.5 12.2 62 153-216 324-387 (638)
389 PRK13947 shikimate kinase; Pro 94.2 0.038 8.2E-07 51.2 3.2 25 177-201 3-27 (171)
390 PRK03846 adenylylsulfate kinas 94.2 0.065 1.4E-06 51.0 4.9 29 173-201 22-50 (198)
391 cd03228 ABCC_MRP_Like The MRP 94.2 0.1 2.2E-06 48.4 6.1 27 174-200 27-53 (171)
392 PRK06002 fliI flagellum-specif 94.2 0.22 4.8E-06 53.0 9.2 89 174-265 164-265 (450)
393 PRK08149 ATP synthase SpaL; Va 94.2 0.25 5.4E-06 52.5 9.6 88 174-265 150-252 (428)
394 PRK13234 nifH nitrogenase redu 94.2 0.061 1.3E-06 54.7 4.9 43 174-218 3-45 (295)
395 CHL00081 chlI Mg-protoporyphyr 94.2 0.064 1.4E-06 55.4 5.1 48 153-200 16-63 (350)
396 TIGR00073 hypB hydrogenase acc 94.2 0.054 1.2E-06 52.0 4.2 33 168-200 15-47 (207)
397 TIGR01351 adk adenylate kinase 94.2 0.17 3.7E-06 48.6 7.7 23 178-200 2-24 (210)
398 KOG0726 26S proteasome regulat 94.2 0.29 6.4E-06 48.2 9.0 96 148-264 179-288 (440)
399 PF12780 AAA_8: P-loop contain 94.2 0.17 3.7E-06 50.5 7.8 77 163-264 20-99 (268)
400 COG4240 Predicted kinase [Gene 94.1 0.35 7.5E-06 46.0 9.2 82 172-254 47-133 (300)
401 cd01672 TMPK Thymidine monopho 94.1 0.13 2.8E-06 48.7 6.7 25 177-201 2-26 (200)
402 PRK06731 flhF flagellar biosyn 94.1 0.3 6.6E-06 48.7 9.5 89 174-264 74-164 (270)
403 cd01129 PulE-GspE PulE/GspE Th 94.1 0.11 2.4E-06 51.8 6.4 99 162-271 68-166 (264)
404 COG0529 CysC Adenylylsulfate k 94.1 0.087 1.9E-06 48.1 5.0 33 170-202 18-50 (197)
405 PRK13949 shikimate kinase; Pro 94.1 0.045 9.9E-07 50.7 3.4 24 177-200 3-26 (169)
406 TIGR00041 DTMP_kinase thymidyl 94.0 0.14 3.1E-06 48.5 6.8 27 176-202 4-30 (195)
407 PRK00300 gmk guanylate kinase; 94.0 0.047 1E-06 52.2 3.5 27 174-200 4-30 (205)
408 PRK14530 adenylate kinase; Pro 94.0 0.046 1E-06 52.9 3.4 25 176-200 4-28 (215)
409 KOG0737 AAA+-type ATPase [Post 94.0 0.44 9.5E-06 48.7 10.3 29 174-202 126-154 (386)
410 PF08298 AAA_PrkA: PrkA AAA do 94.0 0.091 2E-06 53.7 5.5 92 154-250 61-165 (358)
411 TIGR01041 ATP_syn_B_arch ATP s 94.0 0.28 6.2E-06 52.6 9.5 92 174-265 140-249 (458)
412 cd01132 F1_ATPase_alpha F1 ATP 94.0 0.27 6E-06 48.8 8.7 95 174-272 68-180 (274)
413 TIGR03263 guanyl_kin guanylate 94.0 0.04 8.8E-07 51.5 2.8 24 176-199 2-25 (180)
414 cd00464 SK Shikimate kinase (S 94.0 0.048 1E-06 49.4 3.2 23 178-200 2-24 (154)
415 PRK14737 gmk guanylate kinase; 93.9 0.049 1.1E-06 51.3 3.3 26 174-199 3-28 (186)
416 PF00158 Sigma54_activat: Sigm 93.9 0.21 4.5E-06 46.2 7.5 69 157-228 2-72 (168)
417 PRK13975 thymidylate kinase; P 93.9 0.052 1.1E-06 51.5 3.6 26 176-201 3-28 (196)
418 PRK15453 phosphoribulokinase; 93.9 0.33 7.3E-06 48.3 9.2 28 173-200 3-30 (290)
419 PRK06936 type III secretion sy 93.9 0.32 6.8E-06 51.8 9.6 88 174-265 161-263 (439)
420 cd02032 Bchl_like This family 93.9 0.068 1.5E-06 53.6 4.6 38 177-216 2-39 (267)
421 cd00984 DnaB_C DnaB helicase C 93.9 0.52 1.1E-05 46.2 10.9 52 174-228 12-63 (242)
422 PRK12339 2-phosphoglycerate ki 93.9 0.055 1.2E-06 51.4 3.6 25 175-199 3-27 (197)
423 TIGR01039 atpD ATP synthase, F 93.9 0.43 9.3E-06 51.0 10.6 92 174-266 142-249 (461)
424 cd01136 ATPase_flagellum-secre 93.9 0.39 8.5E-06 49.2 10.0 88 174-265 68-170 (326)
425 PF03193 DUF258: Protein of un 93.9 0.084 1.8E-06 48.1 4.6 34 163-199 26-59 (161)
426 TIGR01281 DPOR_bchL light-inde 93.9 0.07 1.5E-06 53.5 4.6 40 177-218 2-41 (268)
427 TIGR01313 therm_gnt_kin carboh 93.9 0.039 8.6E-07 50.7 2.6 22 178-199 1-22 (163)
428 TIGR01040 V-ATPase_V1_B V-type 93.9 0.36 7.8E-06 51.4 9.9 92 174-265 140-258 (466)
429 COG3854 SpoIIIAA ncharacterize 93.9 0.2 4.2E-06 47.8 7.0 115 166-292 128-253 (308)
430 PRK05973 replicative DNA helic 93.9 0.18 3.9E-06 49.2 7.2 49 174-226 63-111 (237)
431 PRK12678 transcription termina 93.9 0.23 5E-06 54.0 8.4 99 166-265 406-514 (672)
432 cd01134 V_A-ATPase_A V/A-type 93.8 0.36 7.7E-06 49.6 9.4 57 166-226 147-205 (369)
433 TIGR00382 clpX endopeptidase C 93.8 0.2 4.4E-06 53.0 8.0 47 154-200 77-141 (413)
434 cd01878 HflX HflX subfamily. 93.8 0.17 3.6E-06 48.3 6.9 27 173-199 39-65 (204)
435 KOG3347 Predicted nucleotide k 93.8 0.057 1.2E-06 47.7 3.2 35 176-217 8-42 (176)
436 PF08477 Miro: Miro-like prote 93.8 0.054 1.2E-06 46.6 3.1 24 178-201 2-25 (119)
437 PF03266 NTPase_1: NTPase; In 93.8 0.051 1.1E-06 50.3 3.1 24 178-201 2-25 (168)
438 TIGR03498 FliI_clade3 flagella 93.8 0.26 5.6E-06 52.3 8.7 89 174-265 139-241 (418)
439 PRK00698 tmk thymidylate kinas 93.7 0.16 3.5E-06 48.4 6.6 28 175-202 3-30 (205)
440 cd02027 APSK Adenosine 5'-phos 93.7 0.051 1.1E-06 49.2 3.0 24 177-200 1-24 (149)
441 PRK06851 hypothetical protein; 93.7 0.76 1.7E-05 47.9 11.8 45 172-217 211-255 (367)
442 TIGR01420 pilT_fam pilus retra 93.7 0.17 3.6E-06 52.7 7.1 111 174-294 121-232 (343)
443 KOG0738 AAA+-type ATPase [Post 93.7 0.37 7.9E-06 49.5 9.0 27 175-201 245-271 (491)
444 PRK13948 shikimate kinase; Pro 93.7 0.069 1.5E-06 50.0 3.8 28 173-200 8-35 (182)
445 COG1124 DppF ABC-type dipeptid 93.7 0.07 1.5E-06 51.3 3.8 27 174-200 32-58 (252)
446 TIGR01287 nifH nitrogenase iro 93.6 0.088 1.9E-06 53.0 4.8 41 176-218 1-41 (275)
447 PHA02244 ATPase-like protein 93.6 0.11 2.4E-06 53.6 5.5 35 164-200 110-144 (383)
448 PRK05922 type III secretion sy 93.6 0.45 9.7E-06 50.6 10.1 89 174-266 156-259 (434)
449 PRK05800 cobU adenosylcobinami 93.6 0.2 4.3E-06 46.4 6.7 48 177-230 3-50 (170)
450 PRK05057 aroK shikimate kinase 93.6 0.065 1.4E-06 49.8 3.5 26 175-200 4-29 (172)
451 PLN02165 adenylate isopentenyl 93.6 0.071 1.5E-06 54.4 3.9 30 171-200 39-68 (334)
452 PRK00409 recombination and DNA 93.6 0.2 4.4E-06 57.8 8.1 178 173-372 325-525 (782)
453 PRK09302 circadian clock prote 93.6 0.37 8E-06 53.2 9.9 50 174-226 30-79 (509)
454 cd00071 GMPK Guanosine monopho 93.5 0.051 1.1E-06 48.4 2.6 24 177-200 1-24 (137)
455 PRK09099 type III secretion sy 93.5 0.35 7.5E-06 51.7 9.2 90 173-265 161-264 (441)
456 PRK10078 ribose 1,5-bisphospho 93.5 0.055 1.2E-06 51.0 2.9 24 176-199 3-26 (186)
457 PRK05201 hslU ATP-dependent pr 93.5 0.2 4.3E-06 52.7 7.1 48 154-201 15-76 (443)
458 PRK10820 DNA-binding transcrip 93.5 0.15 3.2E-06 56.3 6.7 62 153-216 203-266 (520)
459 PRK13946 shikimate kinase; Pro 93.5 0.067 1.5E-06 50.3 3.5 26 175-200 10-35 (184)
460 PLN02200 adenylate kinase fami 93.5 0.072 1.6E-06 52.2 3.8 27 174-200 42-68 (234)
461 KOG0736 Peroxisome assembly fa 93.5 0.93 2E-05 50.6 12.3 168 155-346 402-597 (953)
462 PF03029 ATP_bind_1: Conserved 93.5 0.094 2E-06 51.4 4.6 34 180-215 1-34 (238)
463 COG1763 MobB Molybdopterin-gua 93.5 0.073 1.6E-06 48.5 3.4 28 175-202 2-29 (161)
464 PRK14738 gmk guanylate kinase; 93.5 0.066 1.4E-06 51.4 3.4 26 173-198 11-36 (206)
465 COG2019 AdkA Archaeal adenylat 93.4 0.08 1.7E-06 47.8 3.4 47 175-233 4-50 (189)
466 KOG0651 26S proteasome regulat 93.4 0.11 2.4E-06 51.7 4.6 29 174-202 165-193 (388)
467 COG4088 Predicted nucleotide k 93.3 0.062 1.4E-06 50.2 2.8 27 176-202 2-28 (261)
468 PTZ00185 ATPase alpha subunit; 93.3 0.72 1.6E-05 49.7 11.0 92 174-265 188-300 (574)
469 PF10923 DUF2791: P-loop Domai 93.3 0.74 1.6E-05 48.7 11.1 81 156-238 27-117 (416)
470 COG1936 Predicted nucleotide k 93.3 0.062 1.3E-06 48.9 2.7 20 177-196 2-21 (180)
471 cd00820 PEPCK_HprK Phosphoenol 93.3 0.075 1.6E-06 44.8 3.0 22 175-196 15-36 (107)
472 cd02040 NifH NifH gene encodes 93.3 0.15 3.2E-06 51.1 5.8 43 176-220 2-44 (270)
473 TIGR03574 selen_PSTK L-seryl-t 93.3 0.062 1.3E-06 53.3 2.9 25 177-201 1-25 (249)
474 PF13521 AAA_28: AAA domain; P 93.3 0.072 1.6E-06 48.9 3.2 21 178-198 2-22 (163)
475 CHL00072 chlL photochlorophyll 93.3 0.098 2.1E-06 53.0 4.4 40 178-219 3-42 (290)
476 PRK04182 cytidylate kinase; Pr 93.2 0.076 1.6E-06 49.5 3.4 24 177-200 2-25 (180)
477 PRK07594 type III secretion sy 93.2 0.4 8.7E-06 51.0 9.0 89 173-265 153-256 (433)
478 TIGR00176 mobB molybdopterin-g 93.2 0.069 1.5E-06 48.7 2.9 33 177-210 1-33 (155)
479 cd03287 ABC_MSH3_euk MutS3 hom 93.2 0.055 1.2E-06 52.4 2.4 24 174-197 30-53 (222)
480 PRK04196 V-type ATP synthase s 93.2 0.46 1E-05 51.1 9.5 92 174-265 142-251 (460)
481 TIGR03496 FliI_clade1 flagella 93.1 0.34 7.3E-06 51.4 8.3 88 174-265 136-238 (411)
482 PRK14532 adenylate kinase; Pro 93.1 0.075 1.6E-06 50.1 3.1 23 178-200 3-25 (188)
483 TIGR02173 cyt_kin_arch cytidyl 93.1 0.085 1.8E-06 48.7 3.4 24 177-200 2-25 (171)
484 PF13604 AAA_30: AAA domain; P 93.1 0.21 4.6E-06 47.4 6.2 30 173-202 16-45 (196)
485 KOG0740 AAA+-type ATPase [Post 93.0 0.84 1.8E-05 48.1 10.9 72 174-265 185-256 (428)
486 PRK06793 fliI flagellum-specif 93.0 0.35 7.7E-06 51.4 8.3 90 174-266 155-258 (432)
487 PRK06761 hypothetical protein; 93.0 0.17 3.7E-06 50.7 5.6 26 176-201 4-29 (282)
488 cd03243 ABC_MutS_homologs The 93.0 0.043 9.3E-07 52.5 1.3 22 176-197 30-51 (202)
489 KOG2170 ATPase of the AAA+ sup 93.0 0.37 8.1E-06 47.8 7.7 46 156-201 84-136 (344)
490 PRK05986 cob(I)alamin adenolsy 93.0 0.33 7.1E-06 45.5 7.1 118 174-293 21-159 (191)
491 PRK05537 bifunctional sulfate 93.0 0.16 3.5E-06 56.4 5.9 47 155-201 370-418 (568)
492 PRK10875 recD exonuclease V su 93.0 0.2 4.4E-06 55.9 6.7 53 175-227 167-220 (615)
493 cd01428 ADK Adenylate kinase ( 92.9 0.082 1.8E-06 50.0 3.1 23 178-200 2-24 (194)
494 PRK03731 aroL shikimate kinase 92.9 0.091 2E-06 48.6 3.4 25 176-200 3-27 (171)
495 PRK13695 putative NTPase; Prov 92.9 0.13 2.9E-06 47.8 4.4 25 177-201 2-26 (174)
496 PRK14531 adenylate kinase; Pro 92.9 0.095 2.1E-06 49.2 3.5 25 176-200 3-27 (183)
497 PF01078 Mg_chelatase: Magnesi 92.9 0.17 3.8E-06 47.9 5.2 44 153-198 2-45 (206)
498 CHL00060 atpB ATP synthase CF1 92.9 0.44 9.6E-06 51.3 8.8 92 174-266 160-274 (494)
499 COG0488 Uup ATPase components 92.9 1 2.2E-05 49.5 11.8 120 174-295 347-499 (530)
500 cd01983 Fer4_NifH The Fer4_Nif 92.9 0.096 2.1E-06 42.8 3.1 25 177-201 1-25 (99)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-61 Score=544.85 Aligned_cols=446 Identities=25% Similarity=0.398 Sum_probs=364.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHhHhhHHHHhhc-----------------c
Q 007268 35 NLQNLKAEVDNLKSERDSLLRQVDEAERNGEEIEENVRSWLEAANKVIEEADKFTEDEAAAN-----------------K 97 (610)
Q Consensus 35 ~~~~~~~~i~~L~~~l~~i~~~l~~a~~~~~~~~~~v~~Wl~~lr~layd~ed~ld~~~~~~-----------------~ 97 (610)
.+.+.++.+..|+++|..+++++.+++.++. ....+..|...+++++|++||.++.+.... .
T Consensus 22 ~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~ 100 (889)
T KOG4658|consen 22 CLDGKDNYILELKENLKALQSALEDLDAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQR 100 (889)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHH
Confidence 3458888999999999999999999999974 367899999999999999999998653211 1
Q ss_pred ccccccC-cchhhhhhHHHHHHHHHHHHHHHHhcCCcccccc-ccCCCcccccCCCCCcCccccHHHHHHHHHHhcCCCc
Q 007268 98 RCFKELC-PNLKTHRRLSKEAERQKEAVVKVLDARRFDRISY-RTAPEDIRLIPNKDYEAFESRASILNEIMDALKNPNV 175 (610)
Q Consensus 98 ~~~~~~~-~~~~~r~~ia~~i~~l~~rl~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vGR~~~~~~L~~~L~~~~~ 175 (610)
.|+.+.+ .....-+.+++++.++...++.+..+..|..+.. ..+.......|...... +|.+..++++.+.|.+++.
T Consensus 101 ~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~ 179 (889)
T KOG4658|consen 101 LCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV 179 (889)
T ss_pred HhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC
Confidence 1111111 2233334455555555555555554444554443 12222233333333334 9999999999999998888
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc-cCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCC---ChhHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE-SDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVE---SESGRARILYDRLK 251 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~l~~~L~ 251 (610)
.+++|+||||+||||||++++|+.. ++.+|+.++||.||+.++...++.+|+..++...... ........+.+.|.
T Consensus 180 ~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~ 259 (889)
T KOG4658|consen 180 GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE 259 (889)
T ss_pred CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc
Confidence 9999999999999999999999998 8999999999999999999999999999988744332 23456666777776
Q ss_pred CCCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEecccccccccCCccceecCCCCCHHHHHHHHHHHhCCC--CCC
Q 007268 252 KEERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDY--VEG 329 (610)
Q Consensus 252 ~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~--~~~ 329 (610)
++||||||||||+..+|+.+..++|...+||+|++|||+..|+...++....+++..|+.++||+||.+.++.. ...
T Consensus 260 -~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~ 338 (889)
T KOG4658|consen 260 -GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSH 338 (889)
T ss_pred -cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccc
Confidence 69999999999999999999999999999999999999999987667788899999999999999999999844 334
Q ss_pred chHHHHHHHHHHHcCCchHHHHHHHHHHhcC-CHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhHccCCchhHHHHHH
Q 007268 330 SELEEVARNVVEECAGLPVSIVTVARALRNK-GIREWKDALEQLRRPSSSNFKDVQPAAFKAIELSYNKLGRDDLKNIFL 408 (610)
Q Consensus 330 ~~~~~~~~~I~~~c~GlPLai~~i~~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~k~cfl 408 (610)
+.++++|++++++|+|+|||++++|+.|+.+ +..+|.++.+.+.+....+..+..+.++++|.+||+.||++ +|.||+
T Consensus 339 ~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFL 417 (889)
T KOG4658|consen 339 PDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFL 417 (889)
T ss_pred ccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHH
Confidence 5589999999999999999999999999988 88899999999988766666666889999999999999977 999999
Q ss_pred HhccCC-C--CChHHHHHhhcCCCCcchhhccccccccccchhhHHHHHHhhcCCcceecCCCCCCCCCCchhhhhhhhh
Q 007268 409 LIGYTA-I--ASIDDLLINQSPDILKPELLYHGKENKKSIGNSEAVQLFDDCTGKLDCVTPGNSAREDNPGAADYFENKI 485 (610)
Q Consensus 409 ~ls~FP-~--i~~~~Li~~W~aeg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~f~eLi 485 (610)
|||+|| | |+++.|+.+|+||||+... ......+++|..|+.+|+
T Consensus 418 ycalFPED~~I~~e~Li~yWiaEGfi~~~---------------------------------~~~~~~~d~G~~~i~~LV 464 (889)
T KOG4658|consen 418 YCALFPEDYEIKKEKLIEYWIAEGFIDPL---------------------------------DGGETAEDVGYDYIEELV 464 (889)
T ss_pred hhccCCcccccchHHHHHHHHhccCcCcc---------------------------------ccccchhcchHHHHHHHH
Confidence 999999 5 9999999999999998741 111122779999999999
Q ss_pred hhhhhccccccccccccceeehhhhhhhhccccc
Q 007268 486 NLRKICRIEQSEEVAGCDWVSLVSDAVLNSKLSI 519 (610)
Q Consensus 486 ~r~~i~~v~~~~~~~~~~vH~lv~~~i~s~~~~~ 519 (610)
++++++.....++..+|.|||+|+|++.. ++.
T Consensus 465 ~~~Ll~~~~~~~~~~~~kmHDvvRe~al~--ias 496 (889)
T KOG4658|consen 465 RASLLIEERDEGRKETVKMHDVVREMALW--IAS 496 (889)
T ss_pred HHHHHhhcccccceeEEEeeHHHHHHHHH--Hhc
Confidence 99999887655788999999999999776 555
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.1e-44 Score=364.67 Aligned_cols=272 Identities=32% Similarity=0.491 Sum_probs=219.5
Q ss_pred cHHHHHHHHHHhcC--CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC-
Q 007268 159 RASILNEIMDALKN--PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFD- 235 (610)
Q Consensus 159 R~~~~~~L~~~L~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~- 235 (610)
|+.++++|.++|.+ ++.++|+|+|+||+||||||.+++++...+.+|+.++|++++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 789999999999999999999999987777789999999999999999999999999988743
Q ss_pred ---CCChhHHHHHHHHHHhCCCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEecccccccccCCccceecCCCCCH
Q 007268 236 ---VESESGRARILYDRLKKEERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEVLSGEMESRKNFPVGFLKE 312 (610)
Q Consensus 236 ---~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~~~l~~L~~ 312 (610)
..+.......+.+.|. ++++||||||||+...|+.+...++....|++||||||+..++.........+++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3455566777777776 579999999999999999888888777789999999999988643333367899999999
Q ss_pred HHHHHHHHHHhCCCC--CCchHHHHHHHHHHHcCCchHHHHHHHHHHhcC-CHHHHHHHHHHhcCCCCCCCCCchhHHHH
Q 007268 313 EEAWSLFKKMAGDYV--EGSELEEVARNVVEECAGLPVSIVTVARALRNK-GIREWKDALEQLRRPSSSNFKDVQPAAFK 389 (610)
Q Consensus 313 ~ea~~Lf~~~~~~~~--~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~ 389 (610)
++|++||.+.++... ..+...+.+++|+++|+|+||||+++|++|+.+ +..+|..+++++...... ..+....+..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999999997443 344556789999999999999999999999754 778999999887665432 2224789999
Q ss_pred HHHhhHccCCchhHHHHHHHhccCC-C--CChHHHHHhhcCCCCcch
Q 007268 390 AIELSYNKLGRDDLKNIFLLIGYTA-I--ASIDDLLINQSPDILKPE 433 (610)
Q Consensus 390 ~l~~Sy~~L~~~~~k~cfl~ls~FP-~--i~~~~Li~~W~aeg~~~~ 433 (610)
++.+||+.||++ +|.||+|||+|| + |+++.|+++|++|||++.
T Consensus 239 ~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999998 999999999999 4 999999999999999874
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-35 Score=350.63 Aligned_cols=301 Identities=20% Similarity=0.246 Sum_probs=230.8
Q ss_pred CCCcCccccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEe---CCCC--------
Q 007268 151 KDYEAFESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEV---SESR-------- 217 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~v---s~~~-------- 217 (610)
.+...++||+..++++..+|. .++.++|+|+||||+||||||+.+|++.... |++.+|+.. +...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchhhcccccc
Confidence 346789999999999998885 5678999999999999999999999987654 888887742 1110
Q ss_pred ---C-hHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEecccc
Q 007268 218 ---D-VRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEE 293 (610)
Q Consensus 218 ---~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 293 (610)
+ ...+..+++..+........ .....+++.+. ++|+||||||||+...|+.+.....+.++||+||||||+..
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~--~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKI--YHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCccc--CCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 1 12233344433321111100 11244566665 69999999999999999998776666688999999999999
Q ss_pred cccccCCccceecCCCCCHHHHHHHHHHHhCCCC-CCchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCHHHHHHHHHHh
Q 007268 294 VLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYV-EGSELEEVARNVVEECAGLPVSIVTVARALRNKGIREWKDALEQL 372 (610)
Q Consensus 294 va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~~~~~~~w~~~l~~l 372 (610)
++. ..+...+|+++.|+.++|++||+++|+... +++.+.+++++|+++|+|+||||+++|++|++++..+|..+++++
T Consensus 336 vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L 414 (1153)
T PLN03210 336 FLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRL 414 (1153)
T ss_pred HHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 864 234567899999999999999999998543 455678999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCchhHHHHHHHhhHccCCchhHHHHHHHhccCCC-CChHHHHHhhcCCCCcchhhccccccccccchhhHH
Q 007268 373 RRPSSSNFKDVQPAAFKAIELSYNKLGRDDLKNIFLLIGYTAI-ASIDDLLINQSPDILKPELLYHGKENKKSIGNSEAV 451 (610)
Q Consensus 373 ~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~k~cfl~ls~FP~-i~~~~Li~~W~aeg~~~~~~~~~~~~~~~~~~~~~~ 451 (610)
+... ...|..+|++||+.|+++..|.||+++|+|+. ...+. +..|.+++..
T Consensus 415 ~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~-------------------- 466 (1153)
T PLN03210 415 RNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDL-------------------- 466 (1153)
T ss_pred HhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCC--------------------
Confidence 7532 45789999999999986448999999999984 55554 5556554321
Q ss_pred HHHHhhcCCcceecCCCCCCCCCCchhhhhhhhhhhhhhccccccccccccceeehhhhhhhh
Q 007268 452 QLFDDCTGKLDCVTPGNSAREDNPGAADYFENKINLRKICRIEQSEEVAGCDWVSLVSDAVLN 514 (610)
Q Consensus 452 ~l~~~~~~~~~~~~~~~~~~~~e~~~~~~f~eLi~r~~i~~v~~~~~~~~~~vH~lv~~~i~s 514 (610)
.++.-++.|+++++|+.. ...+.||+++|++.+.
T Consensus 467 ------------------------~~~~~l~~L~~ksLi~~~-----~~~~~MHdLl~~~~r~ 500 (1153)
T PLN03210 467 ------------------------DVNIGLKNLVDKSLIHVR-----EDIVEMHSLLQEMGKE 500 (1153)
T ss_pred ------------------------CchhChHHHHhcCCEEEc-----CCeEEhhhHHHHHHHH
Confidence 112348889999998753 2469999999998654
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.56 E-value=3.1e-13 Score=159.47 Aligned_cols=294 Identities=12% Similarity=0.118 Sum_probs=186.0
Q ss_pred CCCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeC-CCCChHHHHHHHHH
Q 007268 150 NKDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVS-ESRDVRKIQGEIAD 228 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs-~~~~~~~~~~~i~~ 228 (610)
|.....++-|...++.|.+. ...+++.|+|++|.||||++.++... ++.++|+++. .+.++..+...++.
T Consensus 10 p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence 33445778888777666542 35689999999999999999998853 2368999996 44566667777777
Q ss_pred hhCCCCCC--------------CChhHHHHHHHHHHhC-CCeEEEEEeCCCCcc--cchhhcCCC-CCCCCCeEEEEEec
Q 007268 229 KLGLKFDV--------------ESESGRARILYDRLKK-EERILVILDNIWENL--DLLDVGIPH-GDDHKGCKVLFTAR 290 (610)
Q Consensus 229 ~l~~~~~~--------------~~~~~~~~~l~~~L~~-~kr~LLVLDdv~~~~--~~~~l~~~l-~~~~~gs~IivTTR 290 (610)
.++..... ......+..+...+.. +.+++|||||+.... ........+ .....+.++|||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 66421111 1112234445555543 679999999997542 222222222 22344668889999
Q ss_pred ccccccc--cCCccceecCC----CCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCHHH
Q 007268 291 SEEVLSG--EMESRKNFPVG----FLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALRNKGIRE 364 (610)
Q Consensus 291 ~~~va~~--~~~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~~~~~~~ 364 (610)
...-... .........+. +|+.+|+.+||....+.... .+...+|++.|+|+|+++..++..+......
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~- 235 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS- 235 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-
Confidence 8532110 00112244455 99999999999987664322 2556789999999999999988777543210
Q ss_pred HHHHHHHhcCCCCCCCCCchhHHHHHHH-hhHccCCchhHHHHHHHhccCCCCChHHHHHhhcCCCCcchhhcccccccc
Q 007268 365 WKDALEQLRRPSSSNFKDVQPAAFKAIE-LSYNKLGRDDLKNIFLLIGYTAIASIDDLLINQSPDILKPELLYHGKENKK 443 (610)
Q Consensus 365 w~~~l~~l~~~~~~~~~~~~~~i~~~l~-~Sy~~L~~~~~k~cfl~ls~FP~i~~~~Li~~W~aeg~~~~~~~~~~~~~~ 443 (610)
.......+... ....+...+. -.|+.||++ .+..+...|+++.|+.+-+-...
T Consensus 236 ~~~~~~~~~~~-------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~~~~~l~~~l~------------------ 289 (903)
T PRK04841 236 LHDSARRLAGI-------NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRSMNDALIVRVT------------------ 289 (903)
T ss_pred hhhhhHhhcCC-------CchhHHHHHHHHHHhcCCHH-HHHHHHHhcccccCCHHHHHHHc------------------
Confidence 01111111100 0223444443 348899998 99999999999877754333221
Q ss_pred ccchhhHHHHHHhhcCCcceecCCCCCCCCCCchhhhhhhhhhhhhhc-cccccccccccceeehhhhhhhh
Q 007268 444 SIGNSEAVQLFDDCTGKLDCVTPGNSAREDNPGAADYFENKINLRKIC-RIEQSEEVAGCDWVSLVSDAVLN 514 (610)
Q Consensus 444 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~f~eLi~r~~i~-~v~~~~~~~~~~vH~lv~~~i~s 514 (610)
+ .+.++..+++|...++|- +. ++....|+.|++++++++.
T Consensus 290 -----------------------~------~~~~~~~L~~l~~~~l~~~~~--~~~~~~yr~H~L~r~~l~~ 330 (903)
T PRK04841 290 -----------------------G------EENGQMRLEELERQGLFIQRM--DDSGEWFRYHPLFASFLRH 330 (903)
T ss_pred -----------------------C------CCcHHHHHHHHHHCCCeeEee--cCCCCEEehhHHHHHHHHH
Confidence 0 224578899999888753 33 2333568889999999876
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.33 E-value=3.5e-10 Score=120.52 Aligned_cols=243 Identities=20% Similarity=0.114 Sum_probs=150.1
Q ss_pred CcCccccHHHHHHHHHHhc----CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHH
Q 007268 153 YEAFESRASILNEIMDALK----NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIAD 228 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (610)
+..|+||++++++|...+. ......+.|+|++|+|||++++.+++........-.++++++....+...++..|+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 3578999999999988874 344567899999999999999999998765432345777888777788899999999
Q ss_pred hhCCC-CC--CCChhHHHHHHHHHHhC-CCeEEEEEeCCCCcc------cchhhcCCCCCC-CCCeEEEEEecccccccc
Q 007268 229 KLGLK-FD--VESESGRARILYDRLKK-EERILVILDNIWENL------DLLDVGIPHGDD-HKGCKVLFTARSEEVLSG 297 (610)
Q Consensus 229 ~l~~~-~~--~~~~~~~~~~l~~~L~~-~kr~LLVLDdv~~~~------~~~~l~~~l~~~-~~gs~IivTTR~~~va~~ 297 (610)
++... .+ ..+..+....+.+.+.. +++.+||||+++... .+..+...+... +....+|.++....+...
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~ 188 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYI 188 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhh
Confidence 98652 21 22334556666776653 467899999998642 122222211111 112336666665543211
Q ss_pred c------CCccceecCCCCCHHHHHHHHHHHhCCCC-CCchHHHHHHHHHHH----cCCchHHHHHHHHHHh-----cC-
Q 007268 298 E------MESRKNFPVGFLKEEEAWSLFKKMAGDYV-EGSELEEVARNVVEE----CAGLPVSIVTVARALR-----NK- 360 (610)
Q Consensus 298 ~------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~I~~~----c~GlPLai~~i~~~L~-----~~- 360 (610)
. .-....+.+.+++.++..+++..++.... ...-..+..+.|++. .|..+.|+.++-.... +.
T Consensus 189 l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~ 268 (394)
T PRK00411 189 LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSR 268 (394)
T ss_pred cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCC
Confidence 0 11134689999999999999998873110 001112333444444 4557777776643321 11
Q ss_pred --CHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhHccCCchhHHHHHHHh
Q 007268 361 --GIREWKDALEQLRRPSSSNFKDVQPAAFKAIELSYNKLGRDDLKNIFLLI 410 (610)
Q Consensus 361 --~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~k~cfl~l 410 (610)
+.+....+.+.+. .....-.+..||.+ .|..+..+
T Consensus 269 ~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~-~k~~L~ai 305 (394)
T PRK00411 269 KVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH-EKLLLRAI 305 (394)
T ss_pred CcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH-HHHHHHHH
Confidence 5556666655531 22334568899987 55544433
No 6
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.32 E-value=3.6e-10 Score=113.80 Aligned_cols=183 Identities=18% Similarity=0.195 Sum_probs=118.6
Q ss_pred CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHH--
Q 007268 172 NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDR-- 249 (610)
Q Consensus 172 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-- 249 (610)
..+.+.+.|+|++|+|||||++.+++...... + ..+|+ +....+..+++..|+..++.+............+...
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34456899999999999999999998876321 1 22333 3334567789999999998876544433334444333
Q ss_pred --HhCCCeEEEEEeCCCCcc--cchhhc---CCCCCCCCCeEEEEEecccccc--cc-c-----CCccceecCCCCCHHH
Q 007268 250 --LKKEERILVILDNIWENL--DLLDVG---IPHGDDHKGCKVLFTARSEEVL--SG-E-----MESRKNFPVGFLKEEE 314 (610)
Q Consensus 250 --L~~~kr~LLVLDdv~~~~--~~~~l~---~~l~~~~~gs~IivTTR~~~va--~~-~-----~~~~~~~~l~~L~~~e 314 (610)
...+++.+||+||++... .++.+. ...........|++|....... .. . ......+.+++|+.++
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 335788999999998753 334332 1111122333556665433110 00 0 0113467899999999
Q ss_pred HHHHHHHHhCCC---CCCchHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007268 315 AWSLFKKMAGDY---VEGSELEEVARNVVEECAGLPVSIVTVARAL 357 (610)
Q Consensus 315 a~~Lf~~~~~~~---~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L 357 (610)
..+++...+... ....-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999998877421 1122235788999999999999999998876
No 7
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.30 E-value=6.4e-12 Score=123.37 Aligned_cols=193 Identities=18% Similarity=0.259 Sum_probs=105.0
Q ss_pred ccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHH---------
Q 007268 156 FESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEI--------- 226 (610)
Q Consensus 156 ~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i--------- 226 (610)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+...... + .++|+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNES-SLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHH-HHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhh-HHHHHHHHHHHHHH
Confidence 789999999999999877678999999999999999999999874421 1 34444443333221 12221
Q ss_pred -HHhhCCCC-----------CCCChhHHHHHHHHHHhC-CCeEEEEEeCCCCcc-cc----------hhhcCCCCCCCCC
Q 007268 227 -ADKLGLKF-----------DVESESGRARILYDRLKK-EERILVILDNIWENL-DL----------LDVGIPHGDDHKG 282 (610)
Q Consensus 227 -~~~l~~~~-----------~~~~~~~~~~~l~~~L~~-~kr~LLVLDdv~~~~-~~----------~~l~~~l~~~~~g 282 (610)
...++... ...........+.+.+.+ +++++||+|++.... .. ..+........ .
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ-N 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T-T
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC-C
Confidence 11121100 111223445566666653 456999999997655 11 11112222223 3
Q ss_pred eEEEEEeccccccc-------ccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHH
Q 007268 283 CKVLFTARSEEVLS-------GEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVT 352 (610)
Q Consensus 283 s~IivTTR~~~va~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 352 (610)
..+|+++....... ...+....+.+++|+.+++++++...+.....-+...+..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 33445444332221 12233456999999999999999997643311112345678999999999998865
No 8
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.29 E-value=3.3e-10 Score=123.56 Aligned_cols=294 Identities=17% Similarity=0.164 Sum_probs=192.7
Q ss_pred CCCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHH
Q 007268 150 NKDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIAD 228 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~ 228 (610)
|......+-|...++.|.+. ...+.+.|..|+|.|||||+.++...... -..+.|++++.. .++..++..++.
T Consensus 15 P~~~~~~v~R~rL~~~L~~~---~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRRA---NDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCCcccccccHHHHHHHhcC---CCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHH
Confidence 33456677887666665543 47899999999999999999999884332 357999998754 567888888888
Q ss_pred hhCCCCCC--------------CChhHHHHHHHHHHhC-CCeEEEEEeCCCCcc--cc-hhhcCCCCCCCCCeEEEEEec
Q 007268 229 KLGLKFDV--------------ESESGRARILYDRLKK-EERILVILDNIWENL--DL-LDVGIPHGDDHKGCKVLFTAR 290 (610)
Q Consensus 229 ~l~~~~~~--------------~~~~~~~~~l~~~L~~-~kr~LLVLDdv~~~~--~~-~~l~~~l~~~~~gs~IivTTR 290 (610)
.++.-.+. .+....+..+...+.. .+++.|||||..-.. .. ..+...+.....+-.+|||||
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 87632221 1222345555555543 578999999986432 22 122222223345778999999
Q ss_pred ccccccc--cCCccceecCC----CCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHhcC-CHH
Q 007268 291 SEEVLSG--EMESRKNFPVG----FLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALRNK-GIR 363 (610)
Q Consensus 291 ~~~va~~--~~~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~~~-~~~ 363 (610)
+..-... ..-....++++ .|+.+|+.++|....+...+ +..++.+.+..+|.+-|+..++=.+++. +.+
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 9864311 11122344444 58999999999988653333 2456789999999999999998888833 333
Q ss_pred HHHHHHHHhcCCCCCCCCCchhHHH-HHHHhhHccCCchhHHHHHHHhccCCCCChHHHHHhhcCCCCcchhhccccccc
Q 007268 364 EWKDALEQLRRPSSSNFKDVQPAAF-KAIELSYNKLGRDDLKNIFLLIGYTAIASIDDLLINQSPDILKPELLYHGKENK 442 (610)
Q Consensus 364 ~w~~~l~~l~~~~~~~~~~~~~~i~-~~l~~Sy~~L~~~~~k~cfl~ls~FP~i~~~~Li~~W~aeg~~~~~~~~~~~~~ 442 (610)
.-...+... ...+. -...=-++.||++ +|..++-||+++.|.- .|+..-.
T Consensus 245 q~~~~LsG~-----------~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~~-eL~~~Lt---------------- 295 (894)
T COG2909 245 QSLRGLSGA-----------ASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFND-ELCNALT---------------- 295 (894)
T ss_pred HHhhhccch-----------HHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhhH-HHHHHHh----------------
Confidence 222222110 11111 1233457899999 9999999999984332 2333221
Q ss_pred cccchhhHHHHHHhhcCCcceecCCCCCCCCCCchhhhhhhhhhhhhh-ccccccccccccceeehhhhhhhh
Q 007268 443 KSIGNSEAVQLFDDCTGKLDCVTPGNSAREDNPGAADYFENKINLRKI-CRIEQSEEVAGCDWVSLVSDAVLN 514 (610)
Q Consensus 443 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~f~eLi~r~~i-~~v~~~~~~~~~~vH~lv~~~i~s 514 (610)
| ++.|...+++|-++++| ++. +++...|+.|.++.||++.
T Consensus 296 ------------------------g------~~ng~amLe~L~~~gLFl~~L--dd~~~WfryH~LFaeFL~~ 336 (894)
T COG2909 296 ------------------------G------EENGQAMLEELERRGLFLQRL--DDEGQWFRYHHLFAEFLRQ 336 (894)
T ss_pred ------------------------c------CCcHHHHHHHHHhCCCceeee--cCCCceeehhHHHHHHHHh
Confidence 1 44678889999988855 344 4667789999999999876
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.23 E-value=3.7e-09 Score=111.39 Aligned_cols=243 Identities=19% Similarity=0.195 Sum_probs=147.1
Q ss_pred cCccccHHHHHHHHHHhc----CCCceEEEEEecCCchHHHHHHHHHHHhccCC-CC---CeEEEEEeCCCCChHHHHHH
Q 007268 154 EAFESRASILNEIMDALK----NPNVNMLLIYGMGGIGKTTLAKKVARKAESDK-LF---DQVVLSEVSESRDVRKIQGE 225 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~f---~~~~wv~vs~~~~~~~~~~~ 225 (610)
..++||++++++|..++. ......+.|+|++|+|||++++.+++...... .. -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 478999999999998876 34456899999999999999999998764321 11 25678888877788889999
Q ss_pred HHHhh---CCCCCC--CChhHHHHHHHHHHh-CCCeEEEEEeCCCCcc-c----chhhcCC--CCC-CCCCeEEEEEecc
Q 007268 226 IADKL---GLKFDV--ESESGRARILYDRLK-KEERILVILDNIWENL-D----LLDVGIP--HGD-DHKGCKVLFTARS 291 (610)
Q Consensus 226 i~~~l---~~~~~~--~~~~~~~~~l~~~L~-~~kr~LLVLDdv~~~~-~----~~~l~~~--l~~-~~~gs~IivTTR~ 291 (610)
|+.++ +...+. .+..+....+.+.+. .+++++||||+++... . +..+... ... .+....+|++|+.
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 99988 333221 233445566666664 3568899999998652 1 1122111 011 1123445556654
Q ss_pred ccccc----ccC--CccceecCCCCCHHHHHHHHHHHhCC----CCCCchHHHHHHHHHHHcCCchHHH-HHHHHHH--h
Q 007268 292 EEVLS----GEM--ESRKNFPVGFLKEEEAWSLFKKMAGD----YVEGSELEEVARNVVEECAGLPVSI-VTVARAL--R 358 (610)
Q Consensus 292 ~~va~----~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~----~~~~~~~~~~~~~I~~~c~GlPLai-~~i~~~L--~ 358 (610)
..... ... -....+.++|++.++..+++..++.. ..-.++..+.+..++..+.|.|-.+ .++-... .
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 43211 000 11256889999999999999988741 1122333344555677777888443 3332211 1
Q ss_pred ---c--C-CHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhHccCCchhHHHHHHHhc
Q 007268 359 ---N--K-GIREWKDALEQLRRPSSSNFKDVQPAAFKAIELSYNKLGRDDLKNIFLLIG 411 (610)
Q Consensus 359 ---~--~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~k~cfl~ls 411 (610)
+ . +.+....+.+.+. .....-+...||.+ .|..+..++
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~-~~~~l~ai~ 298 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTH-SKLVLLAIA 298 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHH-HHHHHHHHH
Confidence 1 1 4444544444431 12334566789887 665555443
No 10
>PF05729 NACHT: NACHT domain
Probab=99.21 E-value=8.8e-11 Score=108.79 Aligned_cols=143 Identities=24% Similarity=0.318 Sum_probs=92.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCC----CCeEEEEEeCCCCChH---HHHHHHHHhhCCCCCCCChhHHHHHHHH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKL----FDQVVLSEVSESRDVR---KIQGEIADKLGLKFDVESESGRARILYD 248 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----f~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 248 (610)
+++.|+|.+|+||||+++.++........ +...+|+..+...... .+...|..+...... .....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-----PIEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-----hhHHHHHH
Confidence 58999999999999999999988776544 3456677766544332 333334333322111 11112333
Q ss_pred HHhCCCeEEEEEeCCCCccc---------chhhcCCCCC--CCCCeEEEEEeccccc--ccccCCccceecCCCCCHHHH
Q 007268 249 RLKKEERILVILDNIWENLD---------LLDVGIPHGD--DHKGCKVLFTARSEEV--LSGEMESRKNFPVGFLKEEEA 315 (610)
Q Consensus 249 ~L~~~kr~LLVLDdv~~~~~---------~~~l~~~l~~--~~~gs~IivTTR~~~v--a~~~~~~~~~~~l~~L~~~ea 315 (610)
.+...++++||||++++... +..+...+.. ..++++++||+|.... ..........+.+.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 34457899999999986532 1222211222 2468899999999876 222234446899999999999
Q ss_pred HHHHHHHh
Q 007268 316 WSLFKKMA 323 (610)
Q Consensus 316 ~~Lf~~~~ 323 (610)
.+++.+++
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998875
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.11 E-value=5e-09 Score=107.55 Aligned_cols=248 Identities=16% Similarity=0.125 Sum_probs=134.2
Q ss_pred CcCccccHHHHHHHHHHhc-----CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHH
Q 007268 153 YEAFESRASILNEIMDALK-----NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~-----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
...|+|+++.++.|..++. ......+.|+|++|+|||+||+.+++..... + ..+..+....... +...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchh-HHHHH
Confidence 3579999999999988886 3345678999999999999999999887532 1 1222221111222 22222
Q ss_pred HhhCCCC----C--CCChhHHHHHHHHHHhCCCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEecccccccccCC-
Q 007268 228 DKLGLKF----D--VESESGRARILYDRLKKEERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEVLSGEME- 300 (610)
Q Consensus 228 ~~l~~~~----~--~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~- 300 (610)
..++... + ..-.......+...+. +.+..+|+++..+...+... + .+.+-|..||+...+......
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~~---~---~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAME-DFRLDIVIGKGPSARSVRLD---L---PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHh-hhheeeeeccCccccceeec---C---CCeEEEEecCCccccCHHHHhh
Confidence 3332111 0 0000111222333333 23455566655444333211 1 124455667776544321111
Q ss_pred ccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCC
Q 007268 301 SRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALRNKGIREWKDALEQLRRPSSSNF 380 (610)
Q Consensus 301 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~~~~~~~w~~~l~~l~~~~~~~~ 380 (610)
....+.+++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..++..+ |... ........ .
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a-~~~~~~~i--t 218 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFA-QVRGQKII--N 218 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHH-HHcCCCCc--C
Confidence 1346899999999999999988853221 1123567889999999997665554432 1110 00110000 0
Q ss_pred CCchhHHHHHHHhhHccCCchhHHHHHH-HhccCCC--CChHHHHHhh
Q 007268 381 KDVQPAAFKAIELSYNKLGRDDLKNIFL-LIGYTAI--ASIDDLLINQ 425 (610)
Q Consensus 381 ~~~~~~i~~~l~~Sy~~L~~~~~k~cfl-~ls~FP~--i~~~~Li~~W 425 (610)
.+........+...|..|+++ .+..|. .++.+++ +..+.+....
T Consensus 219 ~~~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~~~~~~~ia~~l 265 (305)
T TIGR00635 219 RDIALKALEMLMIDELGLDEI-DRKLLSVLIEQFQGGPVGLKTLAAAL 265 (305)
T ss_pred HHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhCCCcccHHHHHHHh
Confidence 001222333356678888887 666555 5566663 6666665544
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.09 E-value=4.2e-09 Score=109.06 Aligned_cols=250 Identities=16% Similarity=0.125 Sum_probs=134.7
Q ss_pred CCCcCccccHHHHHHHHHHhc-----CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHH
Q 007268 151 KDYEAFESRASILNEIMDALK-----NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGE 225 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~-----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (610)
.....|+|+++.++.+..++. ....+.+.|+|++|+|||+||+.+++..... + .++..+. ......+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~~ 95 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLAA 95 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHHH
Confidence 356789999999998877764 2345688999999999999999999987642 1 1222211 111122223
Q ss_pred HHHhhCCCC----CC-CC-hhHHHHHHHHHHhCCCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEecccccccccC
Q 007268 226 IADKLGLKF----DV-ES-ESGRARILYDRLKKEERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEVLSGEM 299 (610)
Q Consensus 226 i~~~l~~~~----~~-~~-~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 299 (610)
++..++... ++ .. .....+.+...+. +.+..+|+|+..+...+.. .+ .+.+-|..||+...+.....
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~---~l---~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRL---DL---PPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceee---cC---CCceEEeecCCcccCCHHHH
Confidence 333322110 00 00 0001111222222 2334444444332222110 11 12344556666554432111
Q ss_pred C-ccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC
Q 007268 300 E-SRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALRNKGIREWKDALEQLRRPSSS 378 (610)
Q Consensus 300 ~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~~~~~~~w~~~l~~l~~~~~~ 378 (610)
. ....+.+++++.++..+++.+.+...... -..+.+..|++.|+|.|-.+..+...+. .|.... .....
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~---~~~~I- 238 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK---GDGVI- 238 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc---CCCCC-
Confidence 1 13468999999999999999988632221 2236788999999999965555544322 121111 00000
Q ss_pred CCCCchhHHHHHHHhhHccCCchhHHHHHH-HhccCCC--CChHHHHHhh
Q 007268 379 NFKDVQPAAFKAIELSYNKLGRDDLKNIFL-LIGYTAI--ASIDDLLINQ 425 (610)
Q Consensus 379 ~~~~~~~~i~~~l~~Sy~~L~~~~~k~cfl-~ls~FP~--i~~~~Li~~W 425 (610)
...........+...+..|++. .+..+. .+..|++ +..+.+....
T Consensus 239 -~~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~a~~l 286 (328)
T PRK00080 239 -TKEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGGPVGLDTLAAAL 286 (328)
T ss_pred -CHHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCCceeHHHHHHHH
Confidence 0011233445566777888877 666664 7777773 7777776654
No 13
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.96 E-value=1.3e-08 Score=117.06 Aligned_cols=263 Identities=15% Similarity=0.202 Sum_probs=160.3
Q ss_pred CccccHHHHHHHHHHhc---CCCceEEEEEecCCchHHHHHHHHHHHhccC-CCCCeEEEEEeCCCCC---hHHHHHHHH
Q 007268 155 AFESRASILNEIMDALK---NPNVNMLLIYGMGGIGKTTLAKKVARKAESD-KLFDQVVLSEVSESRD---VRKIQGEIA 227 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~f~~~~wv~vs~~~~---~~~~~~~i~ 227 (610)
.++||+.+++.|...+. .+...++.+.|.+|||||+|+++|......+ ..|-.-.+-....+.. ..+.+++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 36899999999998886 4667799999999999999999999887664 2221111111222221 223333333
Q ss_pred Hhh-------------------CCCC------------------C-----CCChhHH-----HHHHHHHHhCCCeEEEEE
Q 007268 228 DKL-------------------GLKF------------------D-----VESESGR-----ARILYDRLKKEERILVIL 260 (610)
Q Consensus 228 ~~l-------------------~~~~------------------~-----~~~~~~~-----~~~l~~~L~~~kr~LLVL 260 (610)
.++ +... + +...... ...+.......++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 333 1110 0 0000111 112233333567999999
Q ss_pred eCC-CCcc-cchh---hcCCCCCCC-CCeEEEE--Eeccc-ccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCch
Q 007268 261 DNI-WENL-DLLD---VGIPHGDDH-KGCKVLF--TARSE-EVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSE 331 (610)
Q Consensus 261 Ddv-~~~~-~~~~---l~~~l~~~~-~gs~Iiv--TTR~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 331 (610)
||+ |-+. .++- +.....-+. ....|.. |.+.. ............|.|.||+..+...|.....+.....+
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~- 239 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP- 239 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc-
Confidence 999 4332 2221 111110000 0112222 22222 11122334557899999999999999999987532222
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcC-------CHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhHccCCchhHH
Q 007268 332 LEEVARNVVEECAGLPVSIVTVARALRNK-------GIREWKDALEQLRRPSSSNFKDVQPAAFKAIELSYNKLGRDDLK 404 (610)
Q Consensus 332 ~~~~~~~I~~~c~GlPLai~~i~~~L~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~k 404 (610)
.+..+.|+++..|+|+.+..+-..+... +...|..-..++... ...+.+...+..-.+.||.. .+
T Consensus 240 -~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~------~~~~~vv~~l~~rl~kL~~~-t~ 311 (849)
T COG3899 240 -APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL------ATTDAVVEFLAARLQKLPGT-TR 311 (849)
T ss_pred -chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc------hhhHHHHHHHHHHHhcCCHH-HH
Confidence 3667899999999999999999999853 333443333332211 12334677799999999998 99
Q ss_pred HHHHHhccCCC-CChHHHHHhhc
Q 007268 405 NIFLLIGYTAI-ASIDDLLINQS 426 (610)
Q Consensus 405 ~cfl~ls~FP~-i~~~~Li~~W~ 426 (610)
..+...|++.. |+.+.|...|-
T Consensus 312 ~Vl~~AA~iG~~F~l~~La~l~~ 334 (849)
T COG3899 312 EVLKAAACIGNRFDLDTLAALAE 334 (849)
T ss_pred HHHHHHHHhCccCCHHHHHHHHh
Confidence 99999999975 88888887763
No 14
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.93 E-value=1.2e-08 Score=102.99 Aligned_cols=174 Identities=19% Similarity=0.185 Sum_probs=110.8
Q ss_pred CCCcCccccHHHHH---HHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHH
Q 007268 151 KDYEAFESRASILN---EIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 151 ~~~~~~vGR~~~~~---~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
.....++|.+..+. -|...+..+.+....+||++|+||||||+.++...... | ..++...+-..-++.++
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdlr~i~ 93 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDLREII 93 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHHHHHH
Confidence 34556777776652 35566667888999999999999999999999876543 3 33333332222222222
Q ss_pred HhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEE--Eecccccc--cccCCc
Q 007268 228 DKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLF--TARSEEVL--SGEMES 301 (610)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv--TTR~~~va--~~~~~~ 301 (610)
+.-.+....+++.+|.+|.|+.. .+-+.+. |.-.+|.-|+| ||.++... ....+.
T Consensus 94 ----------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 94 ----------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred ----------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHhhh
Confidence 22333333478999999999854 3444342 33455666665 66666542 233456
Q ss_pred cceecCCCCCHHHHHHHHHHHhC-CC-----CCCchHHHHHHHHHHHcCCchHHH
Q 007268 302 RKNFPVGFLKEEEAWSLFKKMAG-DY-----VEGSELEEVARNVVEECAGLPVSI 350 (610)
Q Consensus 302 ~~~~~l~~L~~~ea~~Lf~~~~~-~~-----~~~~~~~~~~~~I~~~c~GlPLai 350 (610)
..++.+++|+.++..+++.+-+- .. ....-.++...-|++.++|---+.
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 78999999999999999999442 11 111112356677888998876543
No 15
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.86 E-value=2e-08 Score=107.14 Aligned_cols=181 Identities=18% Similarity=0.196 Sum_probs=110.9
Q ss_pred CCCcCccccHHHHHH---HHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHH
Q 007268 151 KDYEAFESRASILNE---IMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~---L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
.....|+|++..+.. |..++.......+.|+|++|+||||||+.+++..... | +.++....-..-++.++
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~-----~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--F-----EALSAVTSGVKDLREVI 81 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E-----EEEecccccHHHHHHHH
Confidence 345679999988766 8888877777889999999999999999999876432 2 22222111111112222
Q ss_pred HhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEE--Eecccc--cccccCCc
Q 007268 228 DKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLF--TARSEE--VLSGEMES 301 (610)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~Iiv--TTR~~~--va~~~~~~ 301 (610)
. ........+++.+|++|+++... ..+.+...+. .+..+++ ||.+.. +.......
T Consensus 82 ~----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR 142 (413)
T PRK13342 82 E----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSR 142 (413)
T ss_pred H----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhcc
Confidence 1 11112223578899999998653 3444433322 2343444 344332 11122334
Q ss_pred cceecCCCCCHHHHHHHHHHHhCCCC-CC-chHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007268 302 RKNFPVGFLKEEEAWSLFKKMAGDYV-EG-SELEEVARNVVEECAGLPVSIVTVARAL 357 (610)
Q Consensus 302 ~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~-~~~~~~~~~I~~~c~GlPLai~~i~~~L 357 (610)
...+.+.+++.++...++.+.+.... .. .-..+....|++.|+|.|..+..+....
T Consensus 143 ~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 143 AQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred ceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46899999999999999998764211 11 2224667889999999997665554443
No 16
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.77 E-value=1.1e-07 Score=98.92 Aligned_cols=199 Identities=15% Similarity=0.123 Sum_probs=112.8
Q ss_pred CcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC-hHHHHH---HHHH
Q 007268 153 YEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD-VRKIQG---EIAD 228 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~---~i~~ 228 (610)
...++|++..++.|..++..+..+.+.++|++|+||||+|+.+++.......-...+.++++.... ....+. ....
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAH 93 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhh
Confidence 467889999999999999877766789999999999999999998765321112234554432110 000000 0000
Q ss_pred hhCCC-CCCCChhHHHHHHHHHHhC-----CCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEecccc-cccccC
Q 007268 229 KLGLK-FDVESESGRARILYDRLKK-----EERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARSEE-VLSGEM 299 (610)
Q Consensus 229 ~l~~~-~~~~~~~~~~~~l~~~L~~-----~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~~~-va~~~~ 299 (610)
.++.. .......+.+..+.+.... +.+-+||+||++... ....+...+......+++|+||.... +.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~ 173 (337)
T PRK12402 94 FLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIR 173 (337)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhc
Confidence 00000 0001112223333322211 234589999997552 22223222222233467777775432 222222
Q ss_pred CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHH
Q 007268 300 ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVT 352 (610)
Q Consensus 300 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 352 (610)
.....+.+.+++.++...++.+.+...... -..+....|++.++|.+-.+..
T Consensus 174 sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 174 SRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 334678999999999999998876432211 1236778899999988755443
No 17
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.76 E-value=1.1e-06 Score=97.34 Aligned_cols=169 Identities=17% Similarity=0.108 Sum_probs=106.3
Q ss_pred cCccccHHHHHHHHHHhc----CC-CceEEEEEecCCchHHHHHHHHHHHhccC---CCCC--eEEEEEeCCCCChHHHH
Q 007268 154 EAFESRASILNEIMDALK----NP-NVNMLLIYGMGGIGKTTLAKKVARKAESD---KLFD--QVVLSEVSESRDVRKIQ 223 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~----~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~f~--~~~wv~vs~~~~~~~~~ 223 (610)
..+.||++++++|...|. .. ...++.|+|++|+|||++++.+.+..... .... .+++|.+....+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 467899999999988776 22 33567899999999999999998876431 1122 46788887777888899
Q ss_pred HHHHHhhCCCCCC--CChhHHHHHHHHHHhC--CCeEEEEEeCCCCccc-----chhhcCCCCCCCCCeEEEE--Eeccc
Q 007268 224 GEIADKLGLKFDV--ESESGRARILYDRLKK--EERILVILDNIWENLD-----LLDVGIPHGDDHKGCKVLF--TARSE 292 (610)
Q Consensus 224 ~~i~~~l~~~~~~--~~~~~~~~~l~~~L~~--~kr~LLVLDdv~~~~~-----~~~l~~~l~~~~~gs~Iiv--TTR~~ 292 (610)
..|..+|....+. ......+..+...+.. +...+||||+++.... +-.+... + ...+++|+| +|...
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEEEEecCch
Confidence 9999888433322 2233455556655532 2346899999975421 1111111 1 123444443 44332
Q ss_pred cccc----ccC--CccceecCCCCCHHHHHHHHHHHhC
Q 007268 293 EVLS----GEM--ESRKNFPVGFLKEEEAWSLFKKMAG 324 (610)
Q Consensus 293 ~va~----~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (610)
.... ... -....+...|++.++-.+++..++.
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHH
Confidence 2211 000 1123477799999999999999985
No 18
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=5.9e-07 Score=98.91 Aligned_cols=185 Identities=15% Similarity=0.206 Sum_probs=118.1
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCC-------------------CCeEEE
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKL-------------------FDQVVL 210 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------f~~~~w 210 (610)
.....++|.+..++.|.+++..++. +.+.++|..|+||||+|+.+.+....... |..+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 3457889999999999999987664 56689999999999999999987643211 111233
Q ss_pred EEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeE
Q 007268 211 SEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCK 284 (610)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~ 284 (610)
++.+....+. .+..+.+... .++.-++|||+++... .++.+...+-.-..+.+
T Consensus 93 IDAas~rgVD---------------------dIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 93 MDAASNRGVD---------------------EMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred ecccccccHH---------------------HHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 3222221111 1222222221 2455688999998663 35655544433345677
Q ss_pred EEEEecccc-cccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch-HHHHHHHHHH
Q 007268 285 VLFTARSEE-VLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP-VSIVTVARAL 357 (610)
Q Consensus 285 IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~i~~~L 357 (610)
+|+||++.. +.....+....+.+++++.++..+.+.+.+....-. -..+..+.|++.++|.. -++..+-..+
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-id~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA-FEPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 777776644 333334556789999999999999999987533211 12366778999998866 4665544333
No 19
>PTZ00202 tuzin; Provisional
Probab=98.75 E-value=8.6e-07 Score=91.32 Aligned_cols=165 Identities=17% Similarity=0.238 Sum_probs=107.1
Q ss_pred CCCCCcCccccHHHHHHHHHHhcC---CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHH
Q 007268 149 PNKDYEAFESRASILNEIMDALKN---PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGE 225 (610)
Q Consensus 149 ~~~~~~~~vGR~~~~~~L~~~L~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (610)
.|.+...|+||+.++.+|...|.+ ..++++.|.|++|+|||||++.+..... + ...+++.. +..++++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHH
Confidence 355678999999999999998862 2346999999999999999999996653 1 23333333 67999999
Q ss_pred HHHhhCCCCCCCChhHHHHHHHHHHh----C-CCeEEEEEeCCCCcccchhh---cCCCCCCCCCeEEEEEecccccc--
Q 007268 226 IADKLGLKFDVESESGRARILYDRLK----K-EERILVILDNIWENLDLLDV---GIPHGDDHKGCKVLFTARSEEVL-- 295 (610)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~L~----~-~kr~LLVLDdv~~~~~~~~l---~~~l~~~~~gs~IivTTR~~~va-- 295 (610)
|+..||.+.. ....+....+.+.+. . +++.+||+-= .+...+..+ ...+.....-|.|++----+.+.
T Consensus 329 LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 329 VVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchh
Confidence 9999998433 333445555555553 2 6666777642 222222111 11222334456677654444332
Q ss_pred cccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 296 SGEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
....+.-..|.+++++.++|..+..+..
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 2233455689999999999998877754
No 20
>PRK06893 DNA replication initiation factor; Validated
Probab=98.74 E-value=1.3e-07 Score=92.64 Aligned_cols=180 Identities=14% Similarity=0.144 Sum_probs=102.3
Q ss_pred CCCCcCccccHHH--HHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHH
Q 007268 150 NKDYEAFESRASI--LNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 150 ~~~~~~~vGR~~~--~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
......|+|-+.. ...+.+.......+.+.|+|++|+|||+|++.+++....+ ...+.|+++..... ..
T Consensus 12 ~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~~---~~---- 82 (229)
T PRK06893 12 DETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQY---FS---- 82 (229)
T ss_pred cccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhhh---hh----
Confidence 3445666643321 1222222223334678999999999999999999987654 33456776542100 00
Q ss_pred HhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc---ccchh-hcCCCCCC-CCCeEEEEEecccccc-------
Q 007268 228 DKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN---LDLLD-VGIPHGDD-HKGCKVLFTARSEEVL------- 295 (610)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~---~~~~~-l~~~l~~~-~~gs~IivTTR~~~va------- 295 (610)
..+.+.+. +.-+|||||+|.. ..|.. +...+... ..|..+||+|.+....
T Consensus 83 ----------------~~~~~~~~--~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~ 144 (229)
T PRK06893 83 ----------------PAVLENLE--QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLP 144 (229)
T ss_pred ----------------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccch
Confidence 11222222 3459999999863 34442 21111111 2344565544443211
Q ss_pred --cccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007268 296 --SGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARAL 357 (610)
Q Consensus 296 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L 357 (610)
..-......+++++++.++.++++.+.+....- .-.+++..-|++.+.|..-.+..+-..|
T Consensus 145 ~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 145 DLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred hHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 011223458899999999999999998853221 1123677888999988776665554433
No 21
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=3.9e-07 Score=102.22 Aligned_cols=178 Identities=14% Similarity=0.200 Sum_probs=111.6
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCceE-EEEEecCCchHHHHHHHHHHHhccCCCC-------------------CeEEE
Q 007268 151 KDYEAFESRASILNEIMDALKNPNVNM-LLIYGMGGIGKTTLAKKVARKAESDKLF-------------------DQVVL 210 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~~v-v~I~G~gGiGKTtLA~~v~~~~~~~~~f-------------------~~~~w 210 (610)
.....++|.+..+..|.+++..++..- +.++|+.|+||||+|+.+++........ .-+++
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 345678999999999999988766654 5899999999999999999886532111 11122
Q ss_pred EEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeE
Q 007268 211 SEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCK 284 (610)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~ 284 (610)
+.......+ +.++.+.+.+. .+++-++|||+++.. ...+.+...+-.-...++
T Consensus 93 idAas~~kV---------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 93 VDAASRTKV---------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred eccccccCH---------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 222111111 11222222221 356779999999765 344554443333334555
Q ss_pred EEEEecc-cccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHH
Q 007268 285 VLFTARS-EEVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSI 350 (610)
Q Consensus 285 IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (610)
+|++|.+ ..+..........|++++|+.++..+.+.+.+..... .-..+.+..|++.++|.|--+
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-PFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 6655544 4443323344578999999999999999887743211 112356778999999988533
No 22
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.69 E-value=1.4e-06 Score=90.04 Aligned_cols=185 Identities=13% Similarity=0.131 Sum_probs=109.0
Q ss_pred CCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCC-eEEEEEeCCCCChHHHHHHHHHhh
Q 007268 152 DYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFD-QVVLSEVSESRDVRKIQGEIADKL 230 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l 230 (610)
....++|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++...... +. ..+-++.+...... .....+..+
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~-~~~~~i~~~ 92 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGID-VIRNKIKEF 92 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchH-HHHHHHHHH
Confidence 3466889999999999999877667789999999999999999998865432 21 11222222222211 111111111
Q ss_pred CCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEecccc-cccccCCccceecC
Q 007268 231 GLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARSEE-VLSGEMESRKNFPV 307 (610)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l 307 (610)
....+ .....+-++++|+++... ....+...+......+.+|+++.... +..........+++
T Consensus 93 ~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~ 158 (319)
T PRK00440 93 ARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRF 158 (319)
T ss_pred HhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeee
Confidence 00000 001235689999987542 23333322222234456777664432 21111223457899
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 308 GFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 308 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
.+++.++....+...+...... -..+.+..+++.++|.+--+...
T Consensus 159 ~~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~~~~ 203 (319)
T PRK00440 159 SPLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKAINA 203 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999998887532211 12356778999999998654333
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=5.6e-07 Score=94.33 Aligned_cols=194 Identities=15% Similarity=0.174 Sum_probs=112.1
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++|.+..++.|.+.+..++. +.+.++|+.|+||||+|+.+++......... ..+.........+...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKG 85 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcC
Confidence 3456789999999999998876554 5678999999999999999998764221110 0000000011111111
Q ss_pred hCCC-----CCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEeccc-ccccc
Q 007268 230 LGLK-----FDVESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARSE-EVLSG 297 (610)
Q Consensus 230 l~~~-----~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~~-~va~~ 297 (610)
...+ .......+.+..+.+.+. .+++-++|+|+++... .++.+...+......+++|++|.+. .+...
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 0000 000011122333333322 1355699999998654 3555544444444466677766543 23222
Q ss_pred cCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHH
Q 007268 298 EMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVT 352 (610)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 352 (610)
..+....+++.+++.++..+.+...+...... -..+.+..|++.++|.|-.+..
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~-i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESID-TDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 23345689999999999999988876432211 1135677899999998864433
No 24
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=1.7e-06 Score=93.87 Aligned_cols=197 Identities=15% Similarity=0.122 Sum_probs=115.8
Q ss_pred CCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhh
Q 007268 152 DYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKL 230 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (610)
....++|.+..++.|..++..++. ..+.++|++|+||||+|+.+++.....+.+...+|.+.+. ..+....
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~~~ 83 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRRGA 83 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhcCC
Confidence 346789999999999988886655 4569999999999999999998875322222222222110 0000000
Q ss_pred CC-----CCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEec-cccccccc
Q 007268 231 GL-----KFDVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTAR-SEEVLSGE 298 (610)
Q Consensus 231 ~~-----~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR-~~~va~~~ 298 (610)
.. ........+.+..+.+.+. .+++-++|+|+++.. ..++.+...+......+.+|++|. ...+....
T Consensus 84 h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 00 0000111122333333332 145679999999755 345555444443344555555554 33333223
Q ss_pred CCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHH-HHHHHHH
Q 007268 299 MESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSI-VTVARAL 357 (610)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai-~~i~~~L 357 (610)
......+++.+++.++..+.+.+.+....... ..+.+..|++.++|.+--+ ..+-.++
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34457899999999999999999875322211 2356788999999998544 4443333
No 25
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.65 E-value=2.2e-07 Score=90.89 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=106.0
Q ss_pred cCcc--ccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhC
Q 007268 154 EAFE--SRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLG 231 (610)
Q Consensus 154 ~~~v--GR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (610)
..|+ +.+..++.+.+++.....+.+.|+|++|+|||+||+.+++..... ....++++++.-... .
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~~------~----- 81 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQA------D----- 81 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHHh------H-----
Confidence 4454 355677888887766667899999999999999999999886543 345566665432210 0
Q ss_pred CCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc---cch-hhcCCCCC-CCCCeEEEEEeccccccc--------cc
Q 007268 232 LKFDVESESGRARILYDRLKKEERILVILDNIWENL---DLL-DVGIPHGD-DHKGCKVLFTARSEEVLS--------GE 298 (610)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~---~~~-~l~~~l~~-~~~gs~IivTTR~~~va~--------~~ 298 (610)
..+...+. +.-+|||||++... .|. .+...+.. ...+.++|+||+...... ..
T Consensus 82 ------------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ------------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ------------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 01111222 23489999997543 222 22221111 122347888887543110 01
Q ss_pred CCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHH
Q 007268 299 MESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARA 356 (610)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~ 356 (610)
......+++.+++.++...++...+..... .-..+..+.|.+.++|+|..+..+...
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 112357899999999999999876532111 112356677888899998877766443
No 26
>PLN03025 replication factor C subunit; Provisional
Probab=98.65 E-value=7.5e-07 Score=91.85 Aligned_cols=185 Identities=12% Similarity=0.096 Sum_probs=109.9
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCC-eEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFD-QVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++|.++.++.|..++..++.+.+.++|++|+||||+|..+++...... |. .++-++.+...+.. ..+.++..
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd~~~~~-~vr~~i~~ 87 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASDDRGID-VVRNKIKM 87 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccc-CccceeeecccccccHH-HHHHHHHH
Confidence 34567889999999998888877777788999999999999999998864321 22 22223333322222 22222221
Q ss_pred hCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEecccc-cccccCCccceec
Q 007268 230 LGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARSEE-VLSGEMESRKNFP 306 (610)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~~~-va~~~~~~~~~~~ 306 (610)
+..... .+..++.-+++||+++... ....+...+......+++|+++.... +..........++
T Consensus 88 ~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 88 FAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred HHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 110000 0001356799999998653 22222222222234566777665432 2221223346899
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHH
Q 007268 307 VGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIV 351 (610)
Q Consensus 307 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 351 (610)
+++++.++....+...+......- ..+....|++.++|..-.+.
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 999999999999988874322111 13567789999998764433
No 27
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.64 E-value=3.7e-08 Score=100.13 Aligned_cols=234 Identities=22% Similarity=0.230 Sum_probs=161.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCC-CeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLF-DQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
..+.+.++|.|||||||++-++.. .+.. | +.+.++...+..+...+...+...++...... ...+..+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHh-
Confidence 357899999999999999999998 4433 6 46777888877788777777777787765321 223444555555
Q ss_pred CCeEEEEEeCCCCccc-chhhcCCCCCCCCCeEEEEEecccccccccCCccceecCCCCCHH-HHHHHHHHHhC----CC
Q 007268 253 EERILVILDNIWENLD-LLDVGIPHGDDHKGCKVLFTARSEEVLSGEMESRKNFPVGFLKEE-EAWSLFKKMAG----DY 326 (610)
Q Consensus 253 ~kr~LLVLDdv~~~~~-~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~----~~ 326 (610)
.++.++|+||...... -..+...+..+...-.|+.|+|.... .....+..+.+|+.. ++.++|...+. .-
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 5899999999865421 11122222233444568889988654 334567778888765 78899887763 11
Q ss_pred CCCchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCHHHHHHHHH----HhcCCCCCCCCCchhHHHHHHHhhHccCCchh
Q 007268 327 VEGSELEEVARNVVEECAGLPVSIVTVARALRNKGIREWKDALE----QLRRPSSSNFKDVQPAAFKAIELSYNKLGRDD 402 (610)
Q Consensus 327 ~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~~~~~~~w~~~l~----~l~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~ 402 (610)
.-.........+|.++..|.|++|..+++..+.....+....++ .+... ..............|.+||.-|..-
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw- 240 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW- 240 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-
Confidence 11222346778999999999999999999999876665544443 23322 1111122556788999999999988
Q ss_pred HHHHHHHhccCCC-CChH
Q 007268 403 LKNIFLLIGYTAI-ASID 419 (610)
Q Consensus 403 ~k~cfl~ls~FP~-i~~~ 419 (610)
.+--|.-++.|.+ |..+
T Consensus 241 e~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHHHhcchhhhhhhhccc
Confidence 8999999999996 7666
No 28
>PRK04195 replication factor C large subunit; Provisional
Probab=98.64 E-value=9.8e-07 Score=96.16 Aligned_cols=243 Identities=16% Similarity=0.154 Sum_probs=138.1
Q ss_pred CCCcCccccHHHHHHHHHHhcC----CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHH
Q 007268 151 KDYEAFESRASILNEIMDALKN----PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEI 226 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 226 (610)
.....++|+++.++.|.+|+.. ...+.+.|+|++|+||||+|+.+++... +. ++-++.+...+.. .+..+
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERV 84 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHH
Confidence 3456789999999999988862 2268899999999999999999999874 32 3334444433222 23333
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc------chhhcCCCCCCCCCeEEEEEeccccccc--cc
Q 007268 227 ADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD------LLDVGIPHGDDHKGCKVLFTARSEEVLS--GE 298 (610)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~------~~~l~~~l~~~~~gs~IivTTR~~~va~--~~ 298 (610)
+....... .+...++-+||||+++.... +..+...+. ..++.||+|+.+..-.. ..
T Consensus 85 i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 32211100 01112578999999986422 333322222 22345677765432211 12
Q ss_pred CCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHhc-C---CHHHHHHHHHHhcC
Q 007268 299 MESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALRN-K---GIREWKDALEQLRR 374 (610)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~~-~---~~~~w~~~l~~l~~ 374 (610)
......+.+.+++.++....+.+.+......- ..+....|++.++|..-.+......+.. . +......+.. .
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~---~ 224 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR---R 224 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc---C
Confidence 23456799999999999999988774222111 1367789999999987655544443432 2 2322222211 1
Q ss_pred CCCCCCCCchhHHHHHHHhhHc-cCCchhHHHHHHHhccCCCCChHHHHHhhcCCCCcc
Q 007268 375 PSSSNFKDVQPAAFKAIELSYN-KLGRDDLKNIFLLIGYTAIASIDDLLINQSPDILKP 432 (610)
Q Consensus 375 ~~~~~~~~~~~~i~~~l~~Sy~-~L~~~~~k~cfl~ls~FP~i~~~~Li~~W~aeg~~~ 432 (610)
+...+++.++..-+. .-+.. +...+..+ +++. ..+-.|+.|.++.
T Consensus 225 -------d~~~~if~~l~~i~~~k~~~~-a~~~~~~~----~~~~-~~i~~~l~en~~~ 270 (482)
T PRK04195 225 -------DREESIFDALDAVFKARNADQ-ALEASYDV----DEDP-DDLIEWIDENIPK 270 (482)
T ss_pred -------CCCCCHHHHHHHHHCCCCHHH-HHHHHHcc----cCCH-HHHHHHHHhcccc
Confidence 113456666665555 22222 33322221 2333 3567798888865
No 29
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.6e-06 Score=86.78 Aligned_cols=197 Identities=21% Similarity=0.253 Sum_probs=129.9
Q ss_pred CccccHHHHHHHHHHhc----CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhh
Q 007268 155 AFESRASILNEIMDALK----NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKL 230 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (610)
.+.+|+++++++...|. ...+..+.|+|.+|+|||+.++.+.+.......-..+++|++-...+..+++..|++.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 38899999999887775 44455599999999999999999999987642222389999999999999999999999
Q ss_pred C-CCCCCCChhHHHHHHHHHHhC-CCeEEEEEeCCCCcccc--h---hhcCCCCCCCCCeEEEE--Eecccccccc----
Q 007268 231 G-LKFDVESESGRARILYDRLKK-EERILVILDNIWENLDL--L---DVGIPHGDDHKGCKVLF--TARSEEVLSG---- 297 (610)
Q Consensus 231 ~-~~~~~~~~~~~~~~l~~~L~~-~kr~LLVLDdv~~~~~~--~---~l~~~l~~~~~gs~Iiv--TTR~~~va~~---- 297 (610)
+ .+..+.+..+....+.+.+.. ++.+++|||+++....- + .+... +. ...++|++ .+.+......
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~-~~-~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRA-PG-ENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhh-cc-ccceeEEEEEEeccHHHHHHhhhh
Confidence 5 333445666777788888764 67899999999754221 1 22111 11 11444433 4443322110
Q ss_pred --cCCccceecCCCCCHHHHHHHHHHHhC----CCCCCchHHHHHHHHHHHcCC-chHHHHHH
Q 007268 298 --EMESRKNFPVGFLKEEEAWSLFKKMAG----DYVEGSELEEVARNVVEECAG-LPVSIVTV 353 (610)
Q Consensus 298 --~~~~~~~~~l~~L~~~ea~~Lf~~~~~----~~~~~~~~~~~~~~I~~~c~G-lPLai~~i 353 (610)
..-....+..+|-+.+|-.+.+..++. ....++..-+.+..++..-+| --.||..+
T Consensus 176 v~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 176 VKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 011223488999999999999999883 222333333444444444444 33455544
No 30
>PF13173 AAA_14: AAA domain
Probab=98.62 E-value=5.6e-08 Score=86.01 Aligned_cols=121 Identities=21% Similarity=0.217 Sum_probs=81.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEE 254 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~k 254 (610)
.+++.|.|+.|+|||||+++++++.. ....+++++............ +....+.+... .+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~~~~~~~~~~~-~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------DLLEYFLELIK-PG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------hhHHHHHHhhc-cC
Confidence 46899999999999999999998876 245677777665433111000 01122222222 36
Q ss_pred eEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEeccccccc-----ccCCccceecCCCCCHHHH
Q 007268 255 RILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEVLS-----GEMESRKNFPVGFLKEEEA 315 (610)
Q Consensus 255 r~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~-----~~~~~~~~~~l~~L~~~ea 315 (610)
+.+|+||++.....|......+.+..+..+|++|+....... ...+....+++.||+..|-
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 789999999988888877666666666789999998766541 1233445789999998763
No 31
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=9e-07 Score=91.04 Aligned_cols=176 Identities=18% Similarity=0.214 Sum_probs=115.7
Q ss_pred cCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhc----cCCCCCeEEEEEe-CCCCChHHHHHHHH
Q 007268 154 EAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAE----SDKLFDQVVLSEV-SESRDVRKIQGEIA 227 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~----~~~~f~~~~wv~v-s~~~~~~~~~~~i~ 227 (610)
..++|.+..++.|..++..++. +...++|+.|+||||+|+.+++..- ...|+|...|... +......+ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 4577989999999999976554 5678999999999999999998652 2345666556542 23333333 23333
Q ss_pred HhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCC--CcccchhhcCCCCCCCCCeEEEEEecccccc-cccCCccce
Q 007268 228 DKLGLKFDVESESGRARILYDRLKKEERILVILDNIW--ENLDLLDVGIPHGDDHKGCKVLFTARSEEVL-SGEMESRKN 304 (610)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~va-~~~~~~~~~ 304 (610)
+.+...+- .+++-++|+|+++ +...++.+...+.....++.+|++|.+.... ....+....
T Consensus 83 ~~~~~~p~----------------~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKPY----------------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCcc----------------cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 33322110 1345677777765 3456777766666556688888888655422 222344578
Q ss_pred ecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHH
Q 007268 305 FPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIV 351 (610)
Q Consensus 305 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 351 (610)
+.+.+++.++....+.+..... ..+.++.++..++|.|.-+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYNDI-----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcCC-----CHHHHHHHHHHcCCCHHHHH
Confidence 9999999999988887765311 12446678999999987554
No 32
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.61 E-value=3.7e-07 Score=82.09 Aligned_cols=123 Identities=21% Similarity=0.226 Sum_probs=75.1
Q ss_pred cccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCC
Q 007268 157 ESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDV 236 (610)
Q Consensus 157 vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 236 (610)
.|++..+..+...+..+..+.+.|+|++|+|||++++.+++..... -..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 3788899999998887667899999999999999999999987532 2356677665544322211111100
Q ss_pred CChhHHHHHHHHHHhCCCeEEEEEeCCCCc-----ccchhhcCCCCCC---CCCeEEEEEecccc
Q 007268 237 ESESGRARILYDRLKKEERILVILDNIWEN-----LDLLDVGIPHGDD---HKGCKVLFTARSEE 293 (610)
Q Consensus 237 ~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~-----~~~~~l~~~l~~~---~~gs~IivTTR~~~ 293 (610)
............++.+||+||++.. ..+..+...+... ..+..||+||....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111111246789999999853 1222222222211 35778888887653
No 33
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=6.8e-07 Score=97.42 Aligned_cols=193 Identities=12% Similarity=0.145 Sum_probs=111.9
Q ss_pred CCCcCccccHHHHHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++|.+.....|.+++..++ ...+.++|+.|+||||+|+.+++........+ . .++......+.+...
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~------~-~pCg~C~sC~~I~~g 84 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVT------S-TPCEVCATCKAVNEG 84 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCC------C-CCCccCHHHHHHhcC
Confidence 345788999999999999998665 46779999999999999999998764321110 0 000111111111110
Q ss_pred hCC-----CCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEeccc-ccccc
Q 007268 230 LGL-----KFDVESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARSE-EVLSG 297 (610)
Q Consensus 230 l~~-----~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~~-~va~~ 297 (610)
-.. +.......+.+..+..... .++.-++|+|+++... ..+.+...+-....+..+|++|.+. .+...
T Consensus 85 ~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 85 RFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHH
Confidence 000 0000011122222222221 2466799999998652 3444443333333455677766553 23222
Q ss_pred cCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHH
Q 007268 298 EMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIV 351 (610)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 351 (610)
.......+++++++.++..+.+.+.+...... -..+....|++.++|.+-.+.
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~-id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKEQIA-ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 23455789999999999999998887532211 113566789999999874443
No 34
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.60 E-value=1.3e-06 Score=82.68 Aligned_cols=179 Identities=20% Similarity=0.237 Sum_probs=95.8
Q ss_pred CCCCcCccccHHHHHHHHHHhc-----CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHH
Q 007268 150 NKDYEAFESRASILNEIMDALK-----NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQG 224 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~-----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (610)
|....+|+|.++.++.+.-++. ......+.+||++|+||||||.-+++..... | .+.+.+.-....++ .
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~dl-~ 93 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGDL-A 93 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHH-H
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHHH-H
Confidence 4456889999998887654443 3456789999999999999999999998754 3 22332211111111 1
Q ss_pred HHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--c-------chhhcC--CCCCC----------CCCe
Q 007268 225 EIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--D-------LLDVGI--PHGDD----------HKGC 283 (610)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~-------~~~l~~--~l~~~----------~~gs 283 (610)
.++ ..+ +++-+|.+|.++... . .+.... ....+ .+-+
T Consensus 94 ~il--------------------~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 94 AIL--------------------TNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp HHH--------------------HT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred HHH--------------------Hhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 122 222 245577788887542 1 111100 00000 1123
Q ss_pred EEEEEecccccccccCCcc-ceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007268 284 KVLFTARSEEVLSGEMESR-KNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARAL 357 (610)
Q Consensus 284 ~IivTTR~~~va~~~~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L 357 (610)
-|=.|||...+........ ...+++..+.+|-.+++.+.+..... +-.++.+.+|++.|.|-|--..-+-...
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4557888876643222323 34689999999999999987743222 2224778899999999997655544433
No 35
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=6.8e-07 Score=97.15 Aligned_cols=200 Identities=12% Similarity=0.134 Sum_probs=114.8
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++|.+..++.|.+++..++. +.+.++|..|+||||+|+.+.+.......-. .--+. +..+......+.|...
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~-~~g~~-~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADG-EGGIT-AQPCGQCRACTEIDAG 90 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccc-cccCC-CCCCcccHHHHHHHcC
Confidence 3456789999999999999987665 4568999999999999999998764311000 00000 0000001111111100
Q ss_pred -----hCCCCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEE-EEecccccccc
Q 007268 230 -----LGLKFDVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVL-FTARSEEVLSG 297 (610)
Q Consensus 230 -----l~~~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTR~~~va~~ 297 (610)
+.++.......+.+..+.+.+. .++.-++|||+++.. ..++.+...+-.-..++++| +||....+...
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 0000000111222333333322 356679999999865 34555554443333445555 45555555433
Q ss_pred cCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 298 EMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
..+....+.++.++.++..+.+.+.+....... ..+..+.|++.++|.|.-...+
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 345567899999999999999998774322111 1345678999999999644433
No 36
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.58 E-value=1.4e-07 Score=83.71 Aligned_cols=116 Identities=26% Similarity=0.349 Sum_probs=81.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccC---CCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCC-CChhHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESD---KLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDV-ESESGRARILYDR 249 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 249 (610)
+.+.+.|+|.+|+|||+++..+.+..... ..-..++|+.++...+...+...|+..++..... .........+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34789999999999999999999886431 0124677999998889999999999999988766 5566677788888
Q ss_pred HhCCCeEEEEEeCCCCc-c--cchhhcCCCCCCCCCeEEEEEecc
Q 007268 250 LKKEERILVILDNIWEN-L--DLLDVGIPHGDDHKGCKVLFTARS 291 (610)
Q Consensus 250 L~~~kr~LLVLDdv~~~-~--~~~~l~~~l~~~~~gs~IivTTR~ 291 (610)
+.+.+..+||+|+++.. . .++.+.. +.+ ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 87666689999999764 2 2333322 112 556778877665
No 37
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=1.6e-06 Score=93.64 Aligned_cols=195 Identities=12% Similarity=0.160 Sum_probs=112.7
Q ss_pred CCCcCccccHHHHHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHhccCCCCCe-EEEEEeCCCCChHHHHHHHHH
Q 007268 151 KDYEAFESRASILNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQ-VVLSEVSESRDVRKIQGEIAD 228 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~ 228 (610)
.....++|.+..+..|...+..++ .+.+.++|+.|+||||+|+.+++.......... --+..+... .....+..
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~~ 93 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFNN 93 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHhc
Confidence 345678999999999888777555 368899999999999999999987643211100 000000000 00111111
Q ss_pred hhCCC-----CCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEE-Eeccccccc
Q 007268 229 KLGLK-----FDVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLF-TARSEEVLS 296 (610)
Q Consensus 229 ~l~~~-----~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TTR~~~va~ 296 (610)
....+ .......+.+..+.+... .+++-++|+|+++.. ..++.+...+......+.+|+ ||+...+..
T Consensus 94 ~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~ 173 (507)
T PRK06645 94 HNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPA 173 (507)
T ss_pred CCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhH
Confidence 00000 000111122222332221 246678999999865 346666554444444556554 555444443
Q ss_pred ccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHH
Q 007268 297 GEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSI 350 (610)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (610)
........+++.+++.++....+.+.+......- ..+....|++.++|.+--+
T Consensus 174 tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 174 TIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 2334456799999999999999998885332211 1355677999999987443
No 38
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=2.7e-06 Score=88.10 Aligned_cols=198 Identities=15% Similarity=0.113 Sum_probs=116.9
Q ss_pred CCCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCC--CCeEEEEEeCCCCChHHHHHHH
Q 007268 150 NKDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKL--FDQVVLSEVSESRDVRKIQGEI 226 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--f~~~~wv~vs~~~~~~~~~~~i 226 (610)
|.....++|.++....|...+.+++. ..+.|+|+.|+||||+|..+++..-.... +... ....+.......+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 44567789999999999999886654 56899999999999999999988654210 1111 001111111233333
Q ss_pred HHhhC-------CCCCC-------CChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeE-E
Q 007268 227 ADKLG-------LKFDV-------ESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCK-V 285 (610)
Q Consensus 227 ~~~l~-------~~~~~-------~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~-I 285 (610)
...-. .+.+. .-..+.+..+.+.+. .+++-++|+|+++... ..+.+...+-....++. |
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 32211 01000 011234455555554 2566799999998653 23333322222222334 4
Q ss_pred EEEecccccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 286 LFTARSEEVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 286 ivTTR~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
++|++...+.....+....+++.+++.++..+++........ -..+....|++.++|.|.....+
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 555554444433344557899999999999999998432211 11345678999999999865543
No 39
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=2.9e-06 Score=88.40 Aligned_cols=198 Identities=15% Similarity=0.102 Sum_probs=114.9
Q ss_pred CCCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEE----EEEeCCCCChHHHHH
Q 007268 150 NKDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVV----LSEVSESRDVRKIQG 224 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~----wv~vs~~~~~~~~~~ 224 (610)
|.....++|.++..+.|.+.+..++. ..+.++|+.|+||+++|..+++..-......... -.+... .......+
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c~ 93 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVAR 93 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHHH
Confidence 34567889999999999999887665 4688999999999999999988764322111000 000000 00001112
Q ss_pred HHHHhhCCC-------CCCC-------ChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeE
Q 007268 225 EIADKLGLK-------FDVE-------SESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCK 284 (610)
Q Consensus 225 ~i~~~l~~~-------~~~~-------~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~ 284 (610)
.+...-..+ .+.. -..+.+..+.+.+. .+++-++|+|+++.. .....+...+-.-..++.
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 221111100 0000 11233444444443 256679999999754 334444333332334555
Q ss_pred EEEEeccc-ccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 285 VLFTARSE-EVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 285 IivTTR~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
+|++|.+. .+.....+....+.+.+++.++..+++....... + .+....+++.++|.|+....+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C--HHHHHHHHHHcCCCHHHHHHH
Confidence 66666654 3433334556789999999999999998864321 1 122267899999999865444
No 40
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.3e-06 Score=95.05 Aligned_cols=187 Identities=13% Similarity=0.178 Sum_probs=112.5
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCC-------------------CCCeEEE
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDK-------------------LFDQVVL 210 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~f~~~~w 210 (610)
.....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++...... .|...++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3456789999999999999886554 5578999999999999999998654211 1222333
Q ss_pred EEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEE-
Q 007268 211 SEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLF- 287 (610)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv- 287 (610)
+.......+.+ .+.++..+ ...-..+++-++|+|+++.. ..++.+...+-.....+.+|+
T Consensus 93 idaas~~gvd~-ir~ii~~~----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 93 IDAASRTGVEE-TKEILDNI----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred eecccccCHHH-HHHHHHHH----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 33222222211 11121111 11111246679999999754 334445444433334555554
Q ss_pred EecccccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchH-HHHHHHH
Q 007268 288 TARSEEVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPV-SIVTVAR 355 (610)
Q Consensus 288 TTR~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~i~~ 355 (610)
||....+..........+++.+++.++....+.+.+..... .-..+....|++.++|.+- |+..+-.
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55444443223445678999999999999888886643221 1123566789999999774 5555543
No 41
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.3e-06 Score=92.51 Aligned_cols=192 Identities=14% Similarity=0.126 Sum_probs=114.9
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++|.+..+..|..++..++. ..+.++|+.|+||||+|+.+++.......... ..+....+ ...+...
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~~g 87 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEITKG 87 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHHcc
Confidence 3456789999999999999887765 46899999999999999999987654211110 01111111 1112111
Q ss_pred hCCCC---C--CCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEE-EEecccccccc
Q 007268 230 LGLKF---D--VESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVL-FTARSEEVLSG 297 (610)
Q Consensus 230 l~~~~---~--~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTR~~~va~~ 297 (610)
...+. + .....+.+..+.+.+. .++.-++|+|+++.. ..++.+...+-.......+| .||....+...
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 11110 0 0111222333333332 356679999999865 34666654443333345444 45554545433
Q ss_pred cCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHH
Q 007268 298 EMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSI 350 (610)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (610)
.......|.+.+++.++..+.+.+.+...... -..+....|++.++|.+--.
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~-~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ-YDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCChHHHH
Confidence 34455789999999999999998887532211 12366788999999998533
No 42
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=2.3e-06 Score=92.06 Aligned_cols=185 Identities=15% Similarity=0.196 Sum_probs=111.8
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCC-------------------CCeEEE
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKL-------------------FDQVVL 210 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------f~~~~w 210 (610)
.....++|.+.....|...+..++. +.+.++|++|+||||+|+.+++....... +..+..
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 3456789999988888888876665 55899999999999999999887643211 001222
Q ss_pred EEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeE
Q 007268 211 SEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCK 284 (610)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~ 284 (610)
++.+......+ +..+.+... .+++-++|+|+++.. ...+.+...+......+.
T Consensus 91 l~aa~~~gid~---------------------iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 91 LDAASNRGIDE---------------------IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred EeCcccCCHHH---------------------HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 22222222221 222222221 245679999999754 234444433333233444
Q ss_pred EEEEecc-cccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCC-chHHHHHHHHHH
Q 007268 285 VLFTARS-EEVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAG-LPVSIVTVARAL 357 (610)
Q Consensus 285 IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~i~~~L 357 (610)
+|++|.+ ..+..........+.+.+++.++....+.+.+..... .-..+....|++.++| .+.++..+-.+.
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444433 3333333445578999999999999999887742211 1113567788887765 567777776544
No 43
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.53 E-value=7.9e-06 Score=91.17 Aligned_cols=203 Identities=15% Similarity=0.109 Sum_probs=117.4
Q ss_pred CCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCC---CeEEEEEeCCC---CChHHHHHH
Q 007268 152 DYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLF---DQVVLSEVSES---RDVRKIQGE 225 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f---~~~~wv~vs~~---~~~~~~~~~ 225 (610)
....++|++..+..+...+..+....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...+...
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 345788999999998888876667789999999999999999998876443222 12234433311 122222111
Q ss_pred H---------------HHhhCCCC------------------CCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc--ccch
Q 007268 226 I---------------ADKLGLKF------------------DVESESGRARILYDRLKKEERILVILDNIWEN--LDLL 270 (610)
Q Consensus 226 i---------------~~~l~~~~------------------~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~--~~~~ 270 (610)
+ +...+... ...-+......+...+. .+++.++-|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccch
Confidence 1 11112110 00111223455666665 36777776666543 3466
Q ss_pred hhcCCCCCCCCCeEEEE--Eecccccc-cccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 271 DVGIPHGDDHKGCKVLF--TARSEEVL-SGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 271 ~l~~~l~~~~~gs~Iiv--TTR~~~va-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
.+...+....+...+++ ||++.... .........+.+.+++.++.+.++.+.+...... -..++.+.|.+.+..-+
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~~ys~~gR 389 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIARYTIEGR 389 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHCCCcHH
Confidence 66555554444444554 55644321 1112233568899999999999999987532111 11345556666665556
Q ss_pred HHHHHHHHH
Q 007268 348 VSIVTVARA 356 (610)
Q Consensus 348 Lai~~i~~~ 356 (610)
-++..++..
T Consensus 390 raln~L~~~ 398 (615)
T TIGR02903 390 KAVNILADV 398 (615)
T ss_pred HHHHHHHHH
Confidence 777766554
No 44
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.51 E-value=6.1e-07 Score=89.13 Aligned_cols=174 Identities=13% Similarity=0.188 Sum_probs=111.8
Q ss_pred CcCccccHHHHH---HHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 153 YEAFESRASILN---EIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 153 ~~~~vGR~~~~~---~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
..++||.+..+. -|...+.++..+.+.+||++|+||||||+.+....+.. ...||..|....-..-.+.|+++
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~----SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH----SYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC----ceEEEEEeccccchHHHHHHHHH
Confidence 345566655443 24555567889999999999999999999999887654 26678777655444444554443
Q ss_pred hCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEE--Eecccccc--cccCCccc
Q 007268 230 LGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLF--TARSEEVL--SGEMESRK 303 (610)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~Iiv--TTR~~~va--~~~~~~~~ 303 (610)
-. -...+ .++|.+|.+|.|..-. +-+.+ +|.-.+|.-++| ||.+.... ........
T Consensus 213 aq--------------~~~~l-~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~ 274 (554)
T KOG2028|consen 213 AQ--------------NEKSL-TKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCR 274 (554)
T ss_pred HH--------------HHHhh-hcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccc
Confidence 21 01112 3688999999997542 33333 344456665554 77776542 22345678
Q ss_pred eecCCCCCHHHHHHHHHHHhC---C------CCCCc---hHHHHHHHHHHHcCCchH
Q 007268 304 NFPVGFLKEEEAWSLFKKMAG---D------YVEGS---ELEEVARNVVEECAGLPV 348 (610)
Q Consensus 304 ~~~l~~L~~~ea~~Lf~~~~~---~------~~~~~---~~~~~~~~I~~~c~GlPL 348 (610)
++-|++|+.++...++.+-.. + ..+.+ -...+.+-++..|.|-.-
T Consensus 275 VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 275 VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 999999999999999988442 1 11221 123466677788888754
No 45
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=2.8e-06 Score=89.30 Aligned_cols=186 Identities=12% Similarity=0.071 Sum_probs=105.9
Q ss_pred cCccccHHHHHHHHHHhcCCC----------ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHH
Q 007268 154 EAFESRASILNEIMDALKNPN----------VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQ 223 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~~~----------~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 223 (610)
..++|.+..++.|.+++..+. .+.+.++|++|+|||++|+.+++..-..... + .+...-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~----~~Cg~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----E----PGCGECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----C----CCCCCCHHH
Confidence 467899999999999987653 5678899999999999999998865332100 0 000000011
Q ss_pred HHHHHhhCCC-----CC-CCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEecc
Q 007268 224 GEIADKLGLK-----FD-VESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARS 291 (610)
Q Consensus 224 ~~i~~~l~~~-----~~-~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~ 291 (610)
+.+...-..+ ++ .....+.+..+.+.+. .+++-++|+|+++... ..+.+...+-....++.+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 1111000000 00 0001122333333332 2455688889997552 333333333222334555555554
Q ss_pred -cccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 292 -EEVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 292 -~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
..+.....+....+.+.+++.++..+.+.+..+. + .+.+..++..++|.|.....+
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCCHHHHHHH
Confidence 4443333445678999999999999888754321 1 255778999999999755433
No 46
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=1.5e-06 Score=95.99 Aligned_cols=195 Identities=13% Similarity=0.137 Sum_probs=113.1
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++|.+..+..|...+..++. ..+.++|+.|+||||+|+.+++.......+. ..++......+.|...
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQG 85 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcC
Confidence 3467889999999999999887665 4468999999999999999988764321110 0011111122222111
Q ss_pred hCC-----CCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEE-Eecccccccc
Q 007268 230 LGL-----KFDVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLF-TARSEEVLSG 297 (610)
Q Consensus 230 l~~-----~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TTR~~~va~~ 297 (610)
-.. +.......+.+..+.+.+. .+++-++|+|+++.. ...+.+...+-.-...+++|+ ||....+...
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 000 0000011122333333332 356679999999855 344444333333233455555 4444444333
Q ss_pred cCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 298 EMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
..+....|++++|+.++....+.+.+...... ...+....|++.++|.+--+..+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~-~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIP-FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 34456789999999999999999876422111 12355678999999988644333
No 47
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.48 E-value=4.2e-07 Score=85.76 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=34.9
Q ss_pred CccccHHHHHHHHHHhc---CCCceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 155 AFESRASILNEIMDALK---NPNVNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
.|+||++++++|...+. ....+.+.|+|.+|+|||+|.++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999993 4567899999999999999999999988776
No 48
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=3.1e-06 Score=93.26 Aligned_cols=198 Identities=10% Similarity=0.126 Sum_probs=113.5
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCC--CeEEEEEeCCCCChHHHHHHHH
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLF--DQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f--~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
.....++|-+..+..|.+++..++. ..+.++|+.|+||||+|+.+++..-..... .+... ..+......+.|.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~ 88 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDID 88 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHH
Confidence 3456789999999999999987665 566899999999999999998775421110 00000 0111111112221
Q ss_pred HhhCC-----CCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEe-cccccc
Q 007268 228 DKLGL-----KFDVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTA-RSEEVL 295 (610)
Q Consensus 228 ~~l~~-----~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~va 295 (610)
..-.. +.......+.+..+.+... .++.-++|||+++.. ..++.+...+..-...+.+|++| ....+.
T Consensus 89 ~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 89 SGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred cCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 10000 0000011122333333322 244568999999865 34555555444333455666555 444443
Q ss_pred cccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 296 SGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
.........+++++++.++..+.+.+.+....-.- ..+....|++.++|.+--+..+
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 32344567899999999999999988774322211 1356778899999987544433
No 49
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.47 E-value=5.3e-06 Score=87.08 Aligned_cols=185 Identities=15% Similarity=0.175 Sum_probs=110.8
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCC--------------------CCCeEE
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDK--------------------LFDQVV 209 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~f~~~~ 209 (610)
.....++|.+..++.|.+++..++. +.+.++|++|+|||++|+.++....... +++ .+
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EE
Confidence 3456789999999999999986554 5678999999999999999988764221 122 22
Q ss_pred EEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEE
Q 007268 210 LSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLF 287 (610)
Q Consensus 210 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 287 (610)
++..+...... ..+++...+...+ . .+++-++|+|+++.. ...+.+...+......+.+|+
T Consensus 90 ~~~~~~~~~~~-~~~~l~~~~~~~p---------------~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 90 EIDAASNNGVD-DIREILDNVKYAP---------------S-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred EeeccccCCHH-HHHHHHHHHhcCc---------------c-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 23222111111 1122222211100 0 134568899998654 334444444433334566666
Q ss_pred Eecccc-cccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHH
Q 007268 288 TARSEE-VLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVA 354 (610)
Q Consensus 288 TTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~ 354 (610)
+|.+.. +..........+++.+++.++..+.+...+......- ..+.+..|++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i-~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI-EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCChHHHHHHH
Confidence 665433 2222223346788999999999999988774222111 13667789999999986655443
No 50
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.46 E-value=2e-06 Score=96.84 Aligned_cols=172 Identities=21% Similarity=0.281 Sum_probs=101.3
Q ss_pred CCCcCccccHHHHH---HHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHH
Q 007268 151 KDYEAFESRASILN---EIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 151 ~~~~~~vGR~~~~~---~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
.....|+|++..+. .|...+..+....+.|+|++|+||||||+.+++..... |. .++... ....++ +
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~--f~---~lna~~-~~i~di-r--- 94 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAH--FS---SLNAVL-AGVKDL-R--- 94 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCc--ce---eehhhh-hhhHHH-H---
Confidence 44567899998874 46667777777788999999999999999999876432 31 111110 011110 1
Q ss_pred HhhCCCCCCCChhHHHHHHHHHHh-CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEE--ecccc--cccccCC
Q 007268 228 DKLGLKFDVESESGRARILYDRLK-KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFT--ARSEE--VLSGEME 300 (610)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~-~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivT--TR~~~--va~~~~~ 300 (610)
+.+....+.+. .+++.+|+||+++.. ..++.+...+ ..|+.++++ |.+.. +......
T Consensus 95 -------------~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 95 -------------AEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred -------------HHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhc
Confidence 11112212221 145689999999754 3444444322 234545543 33321 1111223
Q ss_pred ccceecCCCCCHHHHHHHHHHHhCC------CCCCchHHHHHHHHHHHcCCchH
Q 007268 301 SRKNFPVGFLKEEEAWSLFKKMAGD------YVEGSELEEVARNVVEECAGLPV 348 (610)
Q Consensus 301 ~~~~~~l~~L~~~ea~~Lf~~~~~~------~~~~~~~~~~~~~I~~~c~GlPL 348 (610)
....+.+++|+.++...++.+.+.. .....-..+....|++.+.|..-
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 3567999999999999999887641 11111224566788888888754
No 51
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=3e-06 Score=92.20 Aligned_cols=184 Identities=12% Similarity=0.159 Sum_probs=111.9
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCce-EEEEEecCCchHHHHHHHHHHHhccCCC-------------------CCeEEE
Q 007268 151 KDYEAFESRASILNEIMDALKNPNVN-MLLIYGMGGIGKTTLAKKVARKAESDKL-------------------FDQVVL 210 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------f~~~~w 210 (610)
....+++|-+..++.|.+++..++.. .+.++|+.|+||||+|+.+++..-.... |..++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 34567899999999999999876654 5789999999999999999987643211 112333
Q ss_pred EEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEE
Q 007268 211 SEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFT 288 (610)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivT 288 (610)
++.+....+.++ ++++..+...+ ..++.-++|+|+++.. ...+.+...+......+++|++
T Consensus 93 idaas~~~v~~i-R~l~~~~~~~p----------------~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 93 VDAASRTKVEDT-RELLDNIPYAP----------------TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred EcccccCCHHHH-HHHHHHHhhcc----------------ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 333322222221 22332221110 1245668999999864 3344443333333345666655
Q ss_pred ecc-cccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHH
Q 007268 289 ARS-EEVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVT 352 (610)
Q Consensus 289 TR~-~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 352 (610)
|.+ ..+..........+++++++.++....+.+.+......- ..+....|++.++|.+.-+..
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHH
Confidence 543 333322234456799999999998888877764322111 134567899999998854433
No 52
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=2.7e-06 Score=93.59 Aligned_cols=181 Identities=11% Similarity=0.165 Sum_probs=110.5
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCC-------------------CeEEE
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLF-------------------DQVVL 210 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f-------------------~~~~w 210 (610)
.....++|.+..+..|..++..++. +.+.++|+.|+||||+|+.+++........ ..++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 3457899999999999999987664 568999999999999999998875432111 11122
Q ss_pred EEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeE
Q 007268 211 SEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCK 284 (610)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~ 284 (610)
++......+ +.+..+.+... .+++-++|+|+++... ....+...+-.....++
T Consensus 93 idaAs~~gV---------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 93 IDAASNTGI---------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred EeccccCCH---------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 222221111 12222222211 2456799999997653 23333333322233456
Q ss_pred EEEEeccc-ccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 285 VLFTARSE-EVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 285 IivTTR~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
+|++|.+. .+.....+....+.+.+++.++....+.+.+......- ..+....|++.++|.+.-+..+
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHHHHH
Confidence 66666443 33222233446788999999999999998875322111 2356788999999998544433
No 53
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.46 E-value=4.6e-06 Score=79.10 Aligned_cols=159 Identities=19% Similarity=0.185 Sum_probs=94.5
Q ss_pred HHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccC--------------------CCCCeEEEEEeCC-CCChHHH
Q 007268 165 EIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESD--------------------KLFDQVVLSEVSE-SRDVRKI 222 (610)
Q Consensus 165 ~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~f~~~~wv~vs~-~~~~~~~ 222 (610)
.|.+.+..++. ..+.++|+.|+|||++|+.+.+..... .+.+. .++.... .... +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence 34555555554 679999999999999999998886542 11121 2222111 1111 11
Q ss_pred HHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEeccc-ccccccC
Q 007268 223 QGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARSE-EVLSGEM 299 (610)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~~-~va~~~~ 299 (610)
.+++...+...+ ..+.+-++|+|+++... .++.+...+......+.+|++|++. .+.....
T Consensus 81 i~~i~~~~~~~~----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 81 VRELVEFLSRTP----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHHHHHHHccCc----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 222222221110 01456789999997542 3445544444334456677666543 2222223
Q ss_pred CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchH
Q 007268 300 ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPV 348 (610)
Q Consensus 300 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 348 (610)
.....+.+.+++.++..+.+.+. + .. .+.+..|++.++|.|.
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~-g--i~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ-G--IS----EEAAELLLALAGGSPG 186 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc-C--CC----HHHHHHHHHHcCCCcc
Confidence 34568999999999999999886 2 11 3568899999999885
No 54
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=2.7e-06 Score=90.31 Aligned_cols=200 Identities=14% Similarity=0.154 Sum_probs=115.0
Q ss_pred CCcCccccHHHHHHHHHHhcCCCce-EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEE-eCCCCChHHHHHHHHHh
Q 007268 152 DYEAFESRASILNEIMDALKNPNVN-MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSE-VSESRDVRKIQGEIADK 229 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~~ 229 (610)
....++|.+..++.|..++.+++.+ .+.++|+.|+||||+|+.+++.......++...|.. ...+...-...+.+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 3567889999999999999876654 588999999999999999998875432111111110 00111111111222211
Q ss_pred hCCC-----CCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEe-cccccccc
Q 007268 230 LGLK-----FDVESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTA-RSEEVLSG 297 (610)
Q Consensus 230 l~~~-----~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTT-R~~~va~~ 297 (610)
...+ .......+.+..+.+.+. .+.+-++|+|+++... .++.+...+....+.+.+|++| +...+...
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 1111 001111233334444442 2456689999997553 4555554444444456666555 43333322
Q ss_pred cCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHH
Q 007268 298 EMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVT 352 (610)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 352 (610)
.......+++.+++.++..+.+...+..... .-..+.+..|++.++|.+--+..
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2233467999999999999888887742211 11236678899999998854433
No 55
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=5.1e-06 Score=89.14 Aligned_cols=182 Identities=12% Similarity=0.126 Sum_probs=112.3
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCce-EEEEEecCCchHHHHHHHHHHHhccCC-------------------CCCeEEE
Q 007268 151 KDYEAFESRASILNEIMDALKNPNVN-MLLIYGMGGIGKTTLAKKVARKAESDK-------------------LFDQVVL 210 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~f~~~~w 210 (610)
....+++|.+..++.|.+.+..++.. .+.++|+.|+||||+|+.+++..-... .+..++.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 34577899999999998888766654 799999999999999999987542110 1122344
Q ss_pred EEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEE
Q 007268 211 SEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFT 288 (610)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivT 288 (610)
++.+....+.+ .+++.+.....+ ..+++-++|+|+++... ..+.+...+-.-.+.+.+|++
T Consensus 90 idaas~~~vdd-IR~Iie~~~~~P----------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 90 IDAASNTSVDD-IKVILENSCYLP----------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred EecccCCCHHH-HHHHHHHHHhcc----------------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 44433333322 122222211000 01456689999997543 344444443333345666665
Q ss_pred e-cccccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHH
Q 007268 289 A-RSEEVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSI 350 (610)
Q Consensus 289 T-R~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (610)
| ....+..........+.+.+++.++..+.+.+.+......- ..+....|++.++|.+-.+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 5 33444332334567899999999999999998875332211 1356678999999988543
No 56
>PF14516 AAA_35: AAA-like domain
Probab=98.40 E-value=3.5e-05 Score=79.72 Aligned_cols=201 Identities=12% Similarity=0.174 Sum_probs=121.2
Q ss_pred CCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-----CChHHHHHHH
Q 007268 152 DYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-----RDVRKIQGEI 226 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~~~i 226 (610)
+.+-.+.|...-+++.+.+.++ ...+.|.|+-.+|||+|...+.+..... .+ .++++++... .+...+++.+
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHH
Confidence 4456778987777777777653 4689999999999999999999888764 23 4557776642 2455455444
Q ss_pred ----HHhhCCCCCC--------CChhHHHHHHHHHHh--CCCeEEEEEeCCCCccc---c-hhh----cCCCC----CCC
Q 007268 227 ----ADKLGLKFDV--------ESESGRARILYDRLK--KEERILVILDNIWENLD---L-LDV----GIPHG----DDH 280 (610)
Q Consensus 227 ----~~~l~~~~~~--------~~~~~~~~~l~~~L~--~~kr~LLVLDdv~~~~~---~-~~l----~~~l~----~~~ 280 (610)
.++++.+... .+.......+.+.+. .+++.+|+||+++..-. + +.+ +.-.. ...
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 4555544211 111122233334332 25899999999975422 1 111 10000 000
Q ss_pred CCe-EEE-EEecccccc----cccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHH
Q 007268 281 KGC-KVL-FTARSEEVL----SGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVA 354 (610)
Q Consensus 281 ~gs-~Ii-vTTR~~~va----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~ 354 (610)
... +++ +.+...... .........+.|++++.+|+..|+.++-... . ....+.|...+||+|.-+..++
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--~---~~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--S---QEQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC--C---HHHHHHHHHHHCCCHHHHHHHH
Confidence 111 222 222111111 1112334579999999999999988863221 1 1337899999999999999999
Q ss_pred HHHhcC
Q 007268 355 RALRNK 360 (610)
Q Consensus 355 ~~L~~~ 360 (610)
..+...
T Consensus 241 ~~l~~~ 246 (331)
T PF14516_consen 241 YLLVEE 246 (331)
T ss_pred HHHHHc
Confidence 999754
No 57
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=4.6e-06 Score=90.87 Aligned_cols=197 Identities=13% Similarity=0.158 Sum_probs=111.1
Q ss_pred CCCcCccccHHHHHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++|++..++.|.+++..++ .+.+.++|+.|+||||+|+.+++...... |... ..+......+.+...
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINTN 85 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHcC
Confidence 345678999999999999987654 45788999999999999999998865322 1110 011111112222111
Q ss_pred hCCCC---C--CCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEe-cccccccc
Q 007268 230 LGLKF---D--VESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTA-RSEEVLSG 297 (610)
Q Consensus 230 l~~~~---~--~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~va~~ 297 (610)
...+. + .....+.++.+.+.+. .+++-++|+|+++.. ..+..+...+......+.+|++| ....+...
T Consensus 86 ~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 86 QSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 11100 0 0011122233332222 123447999999754 34444443333223345555444 43333322
Q ss_pred cCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchH-HHHHHHH
Q 007268 298 EMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPV-SIVTVAR 355 (610)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~i~~ 355 (610)
.......+++.+++.++....+...+......- ..+.+..+++.++|.+- |+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I-s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKI-EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 234456899999999999999988774222111 13557789999999764 5444443
No 58
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=5.5e-06 Score=90.70 Aligned_cols=181 Identities=14% Similarity=0.187 Sum_probs=110.6
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCC-------------------CCeEEE
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKL-------------------FDQVVL 210 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------f~~~~w 210 (610)
.....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++....... |..+++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 3456789999999999999987665 45689999999999999999887643211 111222
Q ss_pred EEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeE
Q 007268 211 SEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCK 284 (610)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~ 284 (610)
+..+..... +.+..+.+... .+++-++|+|+++... ..+.+...+-.....+.
T Consensus 93 i~~~~~~~v---------------------d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 93 VDAASNTQV---------------------DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred eeccccCCH---------------------HHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 322211111 12222222221 2466799999998653 34444433333334555
Q ss_pred EEEEecc-cccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchH-HHHHH
Q 007268 285 VLFTARS-EEVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPV-SIVTV 353 (610)
Q Consensus 285 IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~i 353 (610)
+|++|.+ ..+..........+++.+++.++..+.+.+.+...... ...+....|++.++|.+- |+..+
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6655543 33332223345689999999999999888877422211 123556789999999875 44444
No 59
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.39 E-value=1.2e-05 Score=84.64 Aligned_cols=176 Identities=19% Similarity=0.276 Sum_probs=103.2
Q ss_pred CCCCcCccccHHHHHHHHHHhc----C---------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 150 NKDYEAFESRASILNEIMDALK----N---------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~----~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
......+.|+++.+++|.+.+. . ..++-+.|+|++|+|||++|+.+++..... | +.+.
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~-- 188 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVV-- 188 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecc--
Confidence 3345678899999999887763 1 234669999999999999999999876532 2 2221
Q ss_pred CChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc----------------cchhhcCCCC--C
Q 007268 217 RDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL----------------DLLDVGIPHG--D 278 (610)
Q Consensus 217 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~----------------~~~~l~~~l~--~ 278 (610)
..++.... ++ .....+..+.+......+.+|+||+++... .+..+...+. .
T Consensus 189 --~~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 189 --GSELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred --hHHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 11111111 11 111223334443344567899999987531 0111211111 1
Q ss_pred CCCCeEEEEEeccccccc-ccC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 279 DHKGCKVLFTARSEEVLS-GEM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 279 ~~~gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
...+..||.||....... ... .-...+.+...+.++..++|..++......++. ....+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 234677888887643221 111 224578999999999999999887543322211 1356777887764
No 60
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.36 E-value=1.2e-05 Score=79.83 Aligned_cols=193 Identities=19% Similarity=0.185 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhc---CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCC----eEEEEEeCCCCChHHHHHHHHHhhCC
Q 007268 160 ASILNEIMDALK---NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFD----QVVLSEVSESRDVRKIQGEIADKLGL 232 (610)
Q Consensus 160 ~~~~~~L~~~L~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~----~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (610)
.+.++.|.+.+. ..+.+.+.|+|.+|.|||++++.+...+.....-+ .++.|.+...++...++..|+..++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 345566666665 34567899999999999999999998765431111 47888999999999999999999999
Q ss_pred CCCCCCh-hHHHHHHHHHHhCCCeEEEEEeCCCCccc---------chhhcCCCCCCCCCeEEEEEecccccccc----c
Q 007268 233 KFDVESE-SGRARILYDRLKKEERILVILDNIWENLD---------LLDVGIPHGDDHKGCKVLFTARSEEVLSG----E 298 (610)
Q Consensus 233 ~~~~~~~-~~~~~~l~~~L~~~kr~LLVLDdv~~~~~---------~~~l~~~l~~~~~gs~IivTTR~~~va~~----~ 298 (610)
+...... ......+.+.+..-+--+||+|.+.+... ++.+ ..+.+.-.=+-|.+-|+...-+-. .
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 8754433 33344445555554567999999976411 1111 122222223345566655432210 1
Q ss_pred CCccceecCCCCCH-HHHHHHHHHHhC----CCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 299 MESRKNFPVGFLKE-EEAWSLFKKMAG----DYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 299 ~~~~~~~~l~~L~~-~ea~~Lf~~~~~----~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
.+....+.+..... ++...|+...-. .....-...++++.|...++|+.--+..+
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 12234566665544 344555544331 22222334678999999999987555444
No 61
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.36 E-value=1e-06 Score=86.58 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=63.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC--CChHHHHHHH-----HHhhCCCCCCC-Ch-hHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES--RDVRKIQGEI-----ADKLGLKFDVE-SE-SGRAR 244 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i-----~~~l~~~~~~~-~~-~~~~~ 244 (610)
....++|.|++|+|||||++.+++..... +|+.++|+.+... .++.++++.+ +..++.+.... .. .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999988765 8999999997766 7899999998 33333311000 00 01112
Q ss_pred HHHHHHhCCCeEEEEEeCCCCc
Q 007268 245 ILYDRLKKEERILVILDNIWEN 266 (610)
Q Consensus 245 ~l~~~L~~~kr~LLVLDdv~~~ 266 (610)
........+++.+|++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2222223589999999999643
No 62
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.5e-05 Score=83.96 Aligned_cols=181 Identities=13% Similarity=0.171 Sum_probs=106.0
Q ss_pred CCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccC------CCCCe-EEEEEeCCCCChHHHH
Q 007268 152 DYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESD------KLFDQ-VVLSEVSESRDVRKIQ 223 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~------~~f~~-~~wv~vs~~~~~~~~~ 223 (610)
....++|.+..++.+.+++..+.. +.+.++|++|+|||++|+.+++..... ..|.. ++-+......... ..
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~i 93 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD-DI 93 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH-HH
Confidence 456789999999999999986554 588899999999999999998876431 11211 1111111111111 12
Q ss_pred HHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEe-cccccccccCC
Q 007268 224 GEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTA-RSEEVLSGEME 300 (610)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTT-R~~~va~~~~~ 300 (610)
++++..+...+ . .+++-++++|+++... .+..+...+......+.+|++| ....+......
T Consensus 94 ~~l~~~~~~~p---------------~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 94 RNLIDQVRIPP---------------Q-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHHHhhcc---------------c-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 22222211100 0 1345689999987542 3444433332223345555555 33333222233
Q ss_pred ccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHH
Q 007268 301 SRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSI 350 (610)
Q Consensus 301 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (610)
....+++.+++.++....+...+....-. -..+.+..|+..++|.+-.+
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHHH
Confidence 44579999999999999998877432211 11367778899999976533
No 63
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.34 E-value=5.2e-06 Score=81.55 Aligned_cols=174 Identities=13% Similarity=0.076 Sum_probs=102.9
Q ss_pred cCcc-c-cHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhC
Q 007268 154 EAFE-S-RASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLG 231 (610)
Q Consensus 154 ~~~v-G-R~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (610)
..|+ | -...+..+.++......+.+.|+|++|+|||+|++.+++..... -..+.++++.....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW------------- 86 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-------------
Confidence 3444 4 33445556665545555789999999999999999999876643 33566766643110
Q ss_pred CCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc---ccchhh----cCCCCCCCCCeEEEEEeccccccc--------
Q 007268 232 LKFDVESESGRARILYDRLKKEERILVILDNIWEN---LDLLDV----GIPHGDDHKGCKVLFTARSEEVLS-------- 296 (610)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~---~~~~~l----~~~l~~~~~gs~IivTTR~~~va~-------- 296 (610)
....+.+.+. +--+|++||+... ..|+.. ...... ..+.++|+||+.....-
T Consensus 87 ----------~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~ 153 (235)
T PRK08084 87 ----------FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLA 153 (235)
T ss_pred ----------hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHH
Confidence 0111222222 1248899999653 334322 111111 12236899988653220
Q ss_pred ccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHH
Q 007268 297 GEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARA 356 (610)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~ 356 (610)
.-.....++.+++++.++-.+++.+.+.... -.-.+++..-|++.+.|..-.+..+-..
T Consensus 154 SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 154 SRLDWGQIYKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHhCCceeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 0123346899999999999999988664221 1122467778888888776655544433
No 64
>PRK08727 hypothetical protein; Validated
Probab=98.33 E-value=8.3e-06 Score=80.02 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=100.5
Q ss_pred CcCccccH-HHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhC
Q 007268 153 YEAFESRA-SILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLG 231 (610)
Q Consensus 153 ~~~~vGR~-~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (610)
...|++.. ..+..+...........+.|+|.+|+|||+|++.+++....+ ...+.|+++.+ ....
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~------ 83 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGR------ 83 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhh------
Confidence 45565443 344444444333344579999999999999999999886654 23556665432 1111
Q ss_pred CCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc---cchhhcCCCCC--CCCCeEEEEEecccccc-----ccc---
Q 007268 232 LKFDVESESGRARILYDRLKKEERILVILDNIWENL---DLLDVGIPHGD--DHKGCKVLFTARSEEVL-----SGE--- 298 (610)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~---~~~~l~~~l~~--~~~gs~IivTTR~~~va-----~~~--- 298 (610)
.....+.+. +.-+||+||+.... .|......+.+ ...|..||+|++...-. ...
T Consensus 84 -----------~~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SR 150 (233)
T PRK08727 84 -----------LRDALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSR 150 (233)
T ss_pred -----------HHHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHH
Confidence 112223332 34699999997442 23222111111 12355699999864321 000
Q ss_pred CCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHH
Q 007268 299 MESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIV 351 (610)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 351 (610)
......+++++++.++-.+++.+++....- .-.++...-|++.++|..-.+.
T Consensus 151 l~~~~~~~l~~~~~e~~~~iL~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~l 202 (233)
T PRK08727 151 LAQCIRIGLPVLDDVARAAVLRERAQRRGL-ALDEAAIDWLLTHGERELAGLV 202 (233)
T ss_pred HhcCceEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHHH
Confidence 122458999999999999999987742211 1123667788888887665553
No 65
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=1e-05 Score=89.28 Aligned_cols=199 Identities=11% Similarity=0.156 Sum_probs=115.3
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCC--eEEEEEeCCCCChHHHHHHHH
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFD--QVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~--~~~wv~vs~~~~~~~~~~~i~ 227 (610)
.....++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++......... ...+- .+......+.|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHHh
Confidence 3456789999999999999986664 4789999999999999999998764321110 00000 001111112222
Q ss_pred HhhCCCC-----CCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEe-cccccc
Q 007268 228 DKLGLKF-----DVESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTA-RSEEVL 295 (610)
Q Consensus 228 ~~l~~~~-----~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTT-R~~~va 295 (610)
..-..+. ......+.+..+.+.+. .+++-++|+|+++... ..+.+...+-.-..++.+|++| ....+.
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 2111110 00111223333433332 1355689999997553 3444444333333456665554 444443
Q ss_pred cccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHH
Q 007268 296 SGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVA 354 (610)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~ 354 (610)
.........+.+.+++.++....+.+.+......- ..+....|++.++|.+.-+....
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 32334457899999999999999998874322111 12567789999999986554443
No 66
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=9.5e-06 Score=92.63 Aligned_cols=177 Identities=15% Similarity=0.158 Sum_probs=109.6
Q ss_pred CCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCC---------------------eEE
Q 007268 152 DYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFD---------------------QVV 209 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~---------------------~~~ 209 (610)
....++|.+..++.|..++..++. +.+.++|+.|+||||+|+.+++......... .++
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 356789999999999999987665 4578999999999999999998875321110 112
Q ss_pred EEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCe
Q 007268 210 LSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGC 283 (610)
Q Consensus 210 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs 283 (610)
+++...... .+.+..+.+.+. .++.-++|||+++.. ..++.|...+..-...+
T Consensus 93 eidaas~~~---------------------Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~ 151 (824)
T PRK07764 93 EIDAASHGG---------------------VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHL 151 (824)
T ss_pred EecccccCC---------------------HHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCe
Confidence 222111111 122222322221 245568899999865 34444444443333455
Q ss_pred EEEEEe-cccccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHH
Q 007268 284 KVLFTA-RSEEVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSI 350 (610)
Q Consensus 284 ~IivTT-R~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (610)
.+|++| ....+..........|++.+++.++..+.+.+.+......- ..+....|++.++|.+..+
T Consensus 152 ~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 152 KFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 555555 44444332344567899999999999999988764222111 1345678899999988433
No 67
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=9.9e-06 Score=88.80 Aligned_cols=199 Identities=13% Similarity=0.125 Sum_probs=113.8
Q ss_pred CCcCccccHHHHHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhh
Q 007268 152 DYEAFESRASILNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKL 230 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (610)
....++|.+..+..|.+++..++ ...+.++|+.|+||||+|+.+++..-.....+. ..++.....+.|....
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~ 86 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGM 86 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCC
Confidence 35678899998888888887665 477889999999999999999987653211100 0011111111111111
Q ss_pred CCCC-----CCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEecc-ccccccc
Q 007268 231 GLKF-----DVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARS-EEVLSGE 298 (610)
Q Consensus 231 ~~~~-----~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~va~~~ 298 (610)
..+. ......+.+..+.+.+. .+++-++|+|+++.. ..++.+...+........+|++|.. ..+....
T Consensus 87 hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 87 HVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 0000 00001112222222221 246679999999765 3344444443322334555555544 4443222
Q ss_pred CCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch-HHHHHHHHHHh
Q 007268 299 MESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP-VSIVTVARALR 358 (610)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~i~~~L~ 358 (610)
......+++++++.++....+...+...... -..+.+..|++.++|.+ .|+..+..++.
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3345689999999999999998876432111 11356778999999965 67777765543
No 68
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.30 E-value=5.9e-06 Score=95.37 Aligned_cols=182 Identities=15% Similarity=0.150 Sum_probs=104.1
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCC----CCeEEE-EEeCCCCChHHHHHH
Q 007268 151 KDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKL----FDQVVL-SEVSESRDVRKIQGE 225 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----f~~~~w-v~vs~~~~~~~~~~~ 225 (610)
....+++||+.++.++++.|.......+.++|++|+|||++|+.++++...... .+..+| ++++.-..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------- 256 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------- 256 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-------
Confidence 345689999999999999998777777889999999999999999998753311 122332 33322100
Q ss_pred HHHhhCCCCCCCChhHHHHHHHHHHh-CCCeEEEEEeCCCCcc-------cch--hhcCCCCCCCCCeEEEEEecccccc
Q 007268 226 IADKLGLKFDVESESGRARILYDRLK-KEERILVILDNIWENL-------DLL--DVGIPHGDDHKGCKVLFTARSEEVL 295 (610)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~L~-~~kr~LLVLDdv~~~~-------~~~--~l~~~l~~~~~gs~IivTTR~~~va 295 (610)
+.. ....-...+..+.+.+. .+++.+|++|+++... .-+ .+..+.... ..-++|-||......
T Consensus 257 -----g~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 257 -----GAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATTWAEYK 329 (852)
T ss_pred -----ccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecCHHHHh
Confidence 000 00011123333444443 2468999999986431 111 122222222 234566665543210
Q ss_pred ------cccCCccceecCCCCCHHHHHHHHHHHhC---CCCCCchHHHHHHHHHHHcCCc
Q 007268 296 ------SGEMESRKNFPVGFLKEEEAWSLFKKMAG---DYVEGSELEEVARNVVEECAGL 346 (610)
Q Consensus 296 ------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~I~~~c~Gl 346 (610)
.........+.+++++.++..+++..... ....-.-..+....+++.+.+.
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 11223446899999999999999755442 1111111235556677776544
No 69
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.5e-05 Score=87.54 Aligned_cols=197 Identities=17% Similarity=0.163 Sum_probs=111.8
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCce-EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPNVN-MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+++.....+..+. .+++.-...+.|...
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-------~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA-------TPCGVCESCVALAPN 82 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC-------CcccccHHHHHhhcc
Confidence 34567899999999999999876654 4689999999999999999987543211110 000000111111100
Q ss_pred hC-------CCCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEE-Eecccccc
Q 007268 230 LG-------LKFDVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLF-TARSEEVL 295 (610)
Q Consensus 230 l~-------~~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TTR~~~va 295 (610)
-+ .+.......+.+..+.+.+. .+++-++|+|+++.. ...+.+...+..-...+.+|+ ||....+.
T Consensus 83 ~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 83 GPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 00 00000011222233333321 245568999999754 344444444433334555554 54444443
Q ss_pred cccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchH-HHHHHHH
Q 007268 296 SGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPV-SIVTVAR 355 (610)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~i~~ 355 (610)
.........+++.+++.++..+.+.+.+......- ..+....|++.++|.+- ++..+-.
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 32334467899999999999999888764322111 13556778889999874 4444433
No 70
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.23 E-value=1.4e-05 Score=78.21 Aligned_cols=173 Identities=12% Similarity=0.115 Sum_probs=97.8
Q ss_pred CcCcc-ccH-HHHHHHHHHhc-CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 153 YEAFE-SRA-SILNEIMDALK-NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 153 ~~~~v-GR~-~~~~~L~~~L~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
..+|+ |+. ..+..+.++.. ....+.+.|+|..|+|||+||+.+++..... -....+++...... .
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~--~~~~~~i~~~~~~~------~---- 84 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG--GRNARYLDAASPLL------A---- 84 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEehHHhHH------H----
Confidence 34455 443 33444555443 2345688999999999999999999876432 12445555433210 0
Q ss_pred hCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcccch--hhcCCCCC-CCCCe-EEEEEecccccccc-------c
Q 007268 230 LGLKFDVESESGRARILYDRLKKEERILVILDNIWENLDLL--DVGIPHGD-DHKGC-KVLFTARSEEVLSG-------E 298 (610)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~~~--~l~~~l~~-~~~gs-~IivTTR~~~va~~-------~ 298 (610)
+ ... ...-+||+||++....+. .+...+.. ...+. .+|+|++....... .
T Consensus 85 ~-----------------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr 145 (227)
T PRK08903 85 F-----------------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTR 145 (227)
T ss_pred H-----------------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHH
Confidence 0 011 133478999997543221 22111111 11233 36666664332111 1
Q ss_pred CCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007268 299 MESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARAL 357 (610)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L 357 (610)
......+.+.++++++-..++.+.+..... .-.++....|++.+.|++..+..+...+
T Consensus 146 ~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v-~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 146 LGWGLVYELKPLSDADKIAALKAAAAERGL-QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HhcCeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 112368899999998877777765432111 1123677788889999998887776655
No 71
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=4.5e-05 Score=82.70 Aligned_cols=181 Identities=15% Similarity=0.173 Sum_probs=110.0
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCce-EEEEEecCCchHHHHHHHHHHHhccCCCCC-------------------eEEE
Q 007268 151 KDYEAFESRASILNEIMDALKNPNVN-MLLIYGMGGIGKTTLAKKVARKAESDKLFD-------------------QVVL 210 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~-------------------~~~w 210 (610)
.....++|-+...+.|..++..++.. .+.++|+.|+||||+|+.+++..-.....+ .++.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 34567899999999999998866654 568999999999999999988763211110 1222
Q ss_pred EEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeE
Q 007268 211 SEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCK 284 (610)
Q Consensus 211 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~ 284 (610)
+.......+. .+..+.+... .+++-++|+|+++... ..+.+...+-.....+.
T Consensus 91 ldaas~~gId---------------------~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~ 149 (535)
T PRK08451 91 MDAASNRGID---------------------DIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVK 149 (535)
T ss_pred eccccccCHH---------------------HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceE
Confidence 2221111111 1222222111 1456689999997653 33444333333334566
Q ss_pred EEEEeccc-ccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 285 VLFTARSE-EVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 285 IivTTR~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
+|++|.+. .+..........+++.+++.++....+.+.+......- ..+.+..|++.++|.+.-+..+
T Consensus 150 FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 150 FILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence 66666543 23222334457899999999999999988774322111 2356778999999998544443
No 72
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=3.6e-05 Score=85.72 Aligned_cols=197 Identities=12% Similarity=0.137 Sum_probs=114.9
Q ss_pred CCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhh
Q 007268 152 DYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKL 230 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (610)
....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++......... ....++.....+.|....
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCC
Confidence 356789999999999998876554 5678999999999999999998764321100 001112222333333322
Q ss_pred CCCC---C--CCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEecc-ccccccc
Q 007268 231 GLKF---D--VESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARS-EEVLSGE 298 (610)
Q Consensus 231 ~~~~---~--~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~va~~~ 298 (610)
+.+. + .....+.+..+.+.+. .+++-++|+|+++.. ...+.+...+......+.+|++|.+ ..+....
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 2210 0 1111222333333332 145679999999754 3344444333333345556665543 3332222
Q ss_pred CCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHH
Q 007268 299 MESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVAR 355 (610)
Q Consensus 299 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~ 355 (610)
......+.+.+++..+....+...+......- ..+.+..|++.++|.+..+.....
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINL-EPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 23346788999999999998888774322111 135677899999999865544433
No 73
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.21 E-value=4.6e-06 Score=85.65 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=66.7
Q ss_pred HHHHhc-CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC--ChHHHHHHHHHhhCCCCCCCChhHH
Q 007268 166 IMDALK-NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR--DVRKIQGEIADKLGLKFDVESESGR 242 (610)
Q Consensus 166 L~~~L~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~ 242 (610)
+++.+. =+......|+|++|+||||||+.+++....+ +|+..+||.+.+.. .+.++++.|...+-......+....
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~ 237 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERH 237 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHH
Confidence 444444 1344678899999999999999999998875 89999999998877 7777888876322111111111111
Q ss_pred ------HHHHHHHH-hCCCeEEEEEeCCCCc
Q 007268 243 ------ARILYDRL-KKEERILVILDNIWEN 266 (610)
Q Consensus 243 ------~~~l~~~L-~~~kr~LLVLDdv~~~ 266 (610)
+-...+++ ..++++||++|++...
T Consensus 238 ~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 238 VQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 11222222 3579999999999643
No 74
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.9e-05 Score=86.01 Aligned_cols=202 Identities=13% Similarity=0.155 Sum_probs=113.4
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEE-eCCCCChHHHHHHHHH
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSE-VSESRDVRKIQGEIAD 228 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~ 228 (610)
.....++|.+..+..|.+++..++. ..+.++|+.|+||||+|+.+++..-.....+...|.. +..........+.+..
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 3456789999999999998887665 4588999999999999999998865432111111110 0011111111222211
Q ss_pred hhCCC-----CCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEe-ccccccc
Q 007268 229 KLGLK-----FDVESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTA-RSEEVLS 296 (610)
Q Consensus 229 ~l~~~-----~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTT-R~~~va~ 296 (610)
.-..+ .......+.+..+.+.+. .+.+-++|+|+++... ..+.+...+-.-...+.+|++| +...+..
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 11111 001111233334444442 2455688999997653 3444444333333345555444 4444432
Q ss_pred ccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchH-HHHHH
Q 007268 297 GEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPV-SIVTV 353 (610)
Q Consensus 297 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~i 353 (610)
........+++.+++.++....+.+.+...... -..+.+..|++.++|..- ++..+
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 233456789999999999988888766422111 113567789999999664 44433
No 75
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.20 E-value=9.5e-06 Score=92.89 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=94.1
Q ss_pred CCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCC---C-CeEEEE-EeCCCCChHHHHHHH
Q 007268 152 DYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKL---F-DQVVLS-EVSESRDVRKIQGEI 226 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~---f-~~~~wv-~vs~~~~~~~~~~~i 226 (610)
...+++||+++++++++.|......-+.++|++|+|||++|+.+++....... + +..+|. +++ .+
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~----------~l 249 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG----------SL 249 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH----------HH
Confidence 34679999999999999998766677889999999999999999998744321 1 333442 211 11
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc----------cchhhcCCCCCCCCCeEEEEEeccccc--
Q 007268 227 ADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL----------DLLDVGIPHGDDHKGCKVLFTARSEEV-- 294 (610)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~----------~~~~l~~~l~~~~~gs~IivTTR~~~v-- 294 (610)
.... . -.......+..+.+.+...++.+|++|+++... +...+..+....+ .-++|-+|.....
T Consensus 250 ~a~~--~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 250 LAGT--K-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYEEYKN 325 (731)
T ss_pred hhhc--c-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHHHHHH
Confidence 1000 0 001122344555555544468999999987331 1112222221222 2345554443221
Q ss_pred --c--cccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 295 --L--SGEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 295 --a--~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
. .........+.+++++.++..+++....
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 0 1111234579999999999999999655
No 76
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=3.8e-05 Score=82.57 Aligned_cols=180 Identities=14% Similarity=0.164 Sum_probs=108.3
Q ss_pred CCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCC---------------------CCCeEE
Q 007268 152 DYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDK---------------------LFDQVV 209 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~---------------------~f~~~~ 209 (610)
....++|.+..+..|.+++..++. +.+.++|+.|+||||+|+.+++..-... +++ .+
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 456789999999999999986654 6688999999999999999988764321 111 11
Q ss_pred EEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCe
Q 007268 210 LSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGC 283 (610)
Q Consensus 210 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs 283 (610)
++........ +.+..+.+.+. .+.+-++|+|+++... ..+.+...+.....++
T Consensus 94 ~i~g~~~~gi---------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 94 EIDGASHRGI---------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred EeeccccCCH---------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 1111111111 11222222221 2456789999987542 3333433333333355
Q ss_pred EEEEEec-ccccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchH-HHHHHH
Q 007268 284 KVLFTAR-SEEVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPV-SIVTVA 354 (610)
Q Consensus 284 ~IivTTR-~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~i~ 354 (610)
.+|++|. ...+..........+++.+++.++....+.+.+...... -..+.+..|++.++|.+- |+..+-
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5666553 333322223445689999999999999888876422111 123567889999999764 444443
No 77
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.20 E-value=2.1e-05 Score=83.17 Aligned_cols=174 Identities=18% Similarity=0.279 Sum_probs=100.9
Q ss_pred CCcCccccHHHHHHHHHHhc----C---------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 152 DYEAFESRASILNEIMDALK----N---------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~----~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
....+.|+++.+++|.+.+. . ..++-|.|+|++|+|||++|+.+++..... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh---
Confidence 34568899999998887653 1 345679999999999999999999876532 222211
Q ss_pred hHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc------------c----chhhcCCCC--CCC
Q 007268 219 VRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL------------D----LLDVGIPHG--DDH 280 (610)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~------------~----~~~l~~~l~--~~~ 280 (610)
.++.... .+ .....+..+.+......+.+|+||+++... . +..+...+. ...
T Consensus 199 -~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 -SELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred -HHHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1111110 01 112233344444444567899999997531 0 111111111 122
Q ss_pred CCeEEEEEecccccccc-cC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 281 KGCKVLFTARSEEVLSG-EM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 281 ~gs~IivTTR~~~va~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
.+..||.||........ .. .-...+.+++.+.++-.++|..++........ .....+++.+.|.-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~--~~~~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD--VDLEELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc--CCHHHHHHHcCCCC
Confidence 35678878876443211 11 12357999999999999999988754322221 11345677776653
No 78
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=4.7e-05 Score=84.74 Aligned_cols=182 Identities=11% Similarity=0.168 Sum_probs=110.7
Q ss_pred CCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccC---------------------CCCCeEE
Q 007268 152 DYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESD---------------------KLFDQVV 209 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------~~f~~~~ 209 (610)
....++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.++...... .+|+ +.
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IH 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eE
Confidence 356789999999999999987665 458899999999999999998875421 1232 22
Q ss_pred EEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEE
Q 007268 210 LSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLF 287 (610)
Q Consensus 210 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~Iiv 287 (610)
.++........+ .+.++.++...+ ..+++-++|+|+++... .++.+...+..-..++.+|+
T Consensus 94 ~ld~~~~~~vd~-Ir~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 94 ELDAASNNSVDD-IRNLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred EecccccCCHHH-HHHHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 222222222211 112222211110 01345688999997653 34445444333334555555
Q ss_pred -EecccccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHH
Q 007268 288 -TARSEEVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVT 352 (610)
Q Consensus 288 -TTR~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 352 (610)
||....+..........+++.+++.++....+.+.+....-.. ..+.+..|++.++|..--+..
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i-~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA-EPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 4444444433345567899999999999999988774322111 125677899999997754433
No 79
>PRK09087 hypothetical protein; Validated
Probab=98.19 E-value=2.2e-05 Score=76.40 Aligned_cols=144 Identities=17% Similarity=0.148 Sum_probs=86.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEE 254 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~k 254 (610)
.+.+.|+|++|+|||+|++.++..... .+++.. .+...++ ..+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~--------------------~~~~~-- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAA--------------------NAAAE-- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHH--------------------Hhhhc--
Confidence 467999999999999999988876432 233321 1111111 11111
Q ss_pred eEEEEEeCCCCcc----cchhhcCCCCCCCCCeEEEEEecccccc--------cccCCccceecCCCCCHHHHHHHHHHH
Q 007268 255 RILVILDNIWENL----DLLDVGIPHGDDHKGCKVLFTARSEEVL--------SGEMESRKNFPVGFLKEEEAWSLFKKM 322 (610)
Q Consensus 255 r~LLVLDdv~~~~----~~~~l~~~l~~~~~gs~IivTTR~~~va--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (610)
-+|++||++... .+-.+...+ ...|..||+|++...-. ..-.....++++++++.++-.+++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 378889996432 121221111 12356788888753321 111234578999999999999999998
Q ss_pred hCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007268 323 AGDYVEGSELEEVARNVVEECAGLPVSIVTVARAL 357 (610)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L 357 (610)
+....- .-.+++..-|++.+.|..-++..+...|
T Consensus 166 ~~~~~~-~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 166 FADRQL-YVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHcCC-CCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 853211 1124677788888888877666543333
No 80
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=3.2e-05 Score=86.17 Aligned_cols=182 Identities=14% Similarity=0.175 Sum_probs=109.8
Q ss_pred CCCcCccccHHHHHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHhccCCCCC----------------eEEEEEe
Q 007268 151 KDYEAFESRASILNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKAESDKLFD----------------QVVLSEV 213 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~----------------~~~wv~v 213 (610)
.....++|.+..++.|..++..++ .+.+.++|+.|+||||+|+.+++..-.....+ .++++..
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieida 94 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDA 94 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEec
Confidence 345678899999999999998665 45678999999999999999987754321100 0111111
Q ss_pred CCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeE-EE
Q 007268 214 SESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCK-VL 286 (610)
Q Consensus 214 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~-Ii 286 (610)
... ...+.++.+.+.+. .+++-++|+|+++.. ..+..+...+-.....+. |+
T Consensus 95 asn---------------------~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 95 ASN---------------------NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred ccc---------------------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEE
Confidence 000 11222334444333 246679999999754 344444433332233444 44
Q ss_pred EEecccccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchH-HHHHHH
Q 007268 287 FTARSEEVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPV-SIVTVA 354 (610)
Q Consensus 287 vTTR~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~i~ 354 (610)
+||....+..........+.+.+++.++....+...+....... ..+.+..|++.++|.+- |+..+-
T Consensus 154 aTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 154 ATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred EcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 55555544332334457899999999999999888663221111 12557789999999774 444433
No 81
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=0.00018 Score=73.56 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=113.0
Q ss_pred cCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCC-------------CCCeEEEEEeCCCCCh
Q 007268 154 EAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDK-------------LFDQVVLSEVSESRDV 219 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------~f~~~~wv~vs~~~~~ 219 (610)
..++|.+..++.|...+..++. +...++|+.|+||+++|..+++..-... ......|+.-.....-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4678999999999999987764 8899999999999999999988753321 1112233321100000
Q ss_pred HHHHHHHHHhhCC--CCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEecc
Q 007268 220 RKIQGEIADKLGL--KFDVESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARS 291 (610)
Q Consensus 220 ~~~~~~i~~~l~~--~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~ 291 (610)
..+-..-+...+. .....-..+.+..+.+.+. .+++-++|+|+++... ..+.+...+-.-.+..-|++|+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~ 163 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSP 163 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 0000011111110 0011111233455555553 2566799999987553 233332222111223344455554
Q ss_pred cccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHH
Q 007268 292 EEVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVA 354 (610)
Q Consensus 292 ~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~ 354 (610)
..+.....+....+++.+++.++..+.+.+........ .....++..++|.|..+..+.
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~----~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN----INFPELLALAQGSPGAAIANI 222 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch----hHHHHHHHHcCCCHHHHHHHH
Confidence 55544445567899999999999999999875321111 113578999999997655443
No 82
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=6.5e-05 Score=81.37 Aligned_cols=181 Identities=13% Similarity=0.145 Sum_probs=107.9
Q ss_pred CCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCC-------------------CCCeEEEE
Q 007268 152 DYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDK-------------------LFDQVVLS 211 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~f~~~~wv 211 (610)
....++|.+..+..|..++..++. +.+.++|+.|+||||+|+.++....... .+...+++
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 456788999999999999986554 4567899999999999999988754210 01112222
Q ss_pred EeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEE
Q 007268 212 EVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCKV 285 (610)
Q Consensus 212 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~I 285 (610)
+.+.... .+.+..+.+... .+++-++|+|+++... ..+.+...+....+.+.+
T Consensus 94 daas~~g---------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 94 DAASNRG---------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred eCccCCC---------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 2211111 112223333222 2466799999997542 334443333333334445
Q ss_pred EEEe-cccccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHH
Q 007268 286 LFTA-RSEEVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVA 354 (610)
Q Consensus 286 ivTT-R~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~ 354 (610)
|++| +...+..........+.+.+++.++....+...+...... -..+.+..|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5444 4333322222334679999999999999888877422211 123566788899999876554443
No 83
>PRK05642 DNA replication initiation factor; Validated
Probab=98.14 E-value=3.4e-05 Score=75.73 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=91.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCe
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEER 255 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr 255 (610)
..+.|+|..|+|||.|++.+++....+ -..++|++..+ +... ...+.+.+.+ -
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~-~- 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLEQ-Y- 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhhh-C-
Confidence 578999999999999999998876543 24567776532 1111 1223334432 2
Q ss_pred EEEEEeCCCCc---ccchh-hcCCCCC-CCCCeEEEEEeccccccccc--------CCccceecCCCCCHHHHHHHHHHH
Q 007268 256 ILVILDNIWEN---LDLLD-VGIPHGD-DHKGCKVLFTARSEEVLSGE--------MESRKNFPVGFLKEEEAWSLFKKM 322 (610)
Q Consensus 256 ~LLVLDdv~~~---~~~~~-l~~~l~~-~~~gs~IivTTR~~~va~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (610)
=+||+||+... ..|.. +...+.. ...|..+|+|++.....-.. .....++++++++.++-.+++..+
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 37889999633 34433 2111111 12356788888764421101 122357899999999999999966
Q ss_pred hCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007268 323 AGDYVEGSELEEVARNVVEECAGLPVSIVTVARAL 357 (610)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L 357 (610)
+....- .-.+++..-|++.+.|..-.+..+-..|
T Consensus 179 a~~~~~-~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 179 ASRRGL-HLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 642211 1114677788888888766555444433
No 84
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.14 E-value=1.4e-05 Score=82.44 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=86.2
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++|.+...+.+..++..+.. .++.++|++|+|||++|+.+++.... ....++.+. .... ..+..+..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~-~i~~~l~~ 90 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRID-FVRNRLTR 90 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHH-HHHHHHHH
Confidence 4456789999999999999886554 56667999999999999999887532 223444443 2211 11111111
Q ss_pred hCCCCCCCChhHHHHHHHHHHh-CCCeEEEEEeCCCCc--cc-chhhcCCCCCCCCCeEEEEEecccccc-cccCCccce
Q 007268 230 LGLKFDVESESGRARILYDRLK-KEERILVILDNIWEN--LD-LLDVGIPHGDDHKGCKVLFTARSEEVL-SGEMESRKN 304 (610)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~L~-~~kr~LLVLDdv~~~--~~-~~~l~~~l~~~~~gs~IivTTR~~~va-~~~~~~~~~ 304 (610)
...... .+.+-+||+|+++.. .. ...+...+.....++++|+||...... .........
T Consensus 91 ----------------~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 91 ----------------FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred ----------------HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 001110 124568999999755 11 122222122234567888888654321 111223346
Q ss_pred ecCCCCCHHHHHHHHHH
Q 007268 305 FPVGFLKEEEAWSLFKK 321 (610)
Q Consensus 305 ~~l~~L~~~ea~~Lf~~ 321 (610)
+.+...+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 77777788877766654
No 85
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.13 E-value=2.2e-05 Score=91.02 Aligned_cols=158 Identities=16% Similarity=0.282 Sum_probs=93.8
Q ss_pred CcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCC----CeEEEEEeCCCCChHHHHHHHHH
Q 007268 153 YEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLF----DQVVLSEVSESRDVRKIQGEIAD 228 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f----~~~~wv~vs~~~~~~~~~~~i~~ 228 (610)
..+++||++++++++++|......-+.++|++|+|||++|+.++......... +..+|. + +.. .++.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~----~l~a 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIG----LLLA 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHH----HHhc
Confidence 35789999999999999987666677899999999999999999886532111 234442 1 111 1111
Q ss_pred hhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc---------cchhhcCCCCCCCCCeEEEEEecccccc----
Q 007268 229 KLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL---------DLLDVGIPHGDDHKGCKVLFTARSEEVL---- 295 (610)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~---------~~~~l~~~l~~~~~gs~IivTTR~~~va---- 295 (610)
+.... ..-.+.+..+.+.+.+.++.+|++|+++... +...+..+....+ .-++|.+|......
T Consensus 249 --g~~~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 249 --GTKYR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIE 324 (821)
T ss_pred --cCCCc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHh
Confidence 11111 1123345555555555578999999996321 1112222222222 23555555544321
Q ss_pred --cccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 296 --SGEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 296 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
.........+.+...+.++...++....
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 1112334578889999999888887543
No 86
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.10 E-value=6.1e-05 Score=81.22 Aligned_cols=163 Identities=18% Similarity=0.232 Sum_probs=93.0
Q ss_pred CCCCcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCC---CCeEEEEEe
Q 007268 150 NKDYEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKL---FDQVVLSEV 213 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~---f~~~~wv~v 213 (610)
......+.|.+..+++|.+.+. -..++-+.|+|++|+|||++|+.+++....... .....|+.+
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 3445667789998888877653 123566899999999999999999998754311 123444444
Q ss_pred CCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHH----HhCCCeEEEEEeCCCCcc---------c-----chhhcCC
Q 007268 214 SESRDVRKIQGEIADKLGLKFDVESESGRARILYDR----LKKEERILVILDNIWENL---------D-----LLDVGIP 275 (610)
Q Consensus 214 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~----L~~~kr~LLVLDdv~~~~---------~-----~~~l~~~ 275 (610)
.... ++... .. .....+..+.+. ...+++++|+||+++... + ...+...
T Consensus 258 ~~~e----Ll~ky--------vG-ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 258 KGPE----LLNKY--------VG-ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred cchh----hcccc--------cc-hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 3321 11100 00 011122222222 223578999999997431 1 1122221
Q ss_pred CCC--CCCCeEEEEEeccccccc-ccC---CccceecCCCCCHHHHHHHHHHHhCC
Q 007268 276 HGD--DHKGCKVLFTARSEEVLS-GEM---ESRKNFPVGFLKEEEAWSLFKKMAGD 325 (610)
Q Consensus 276 l~~--~~~gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~ 325 (610)
+.. ...+..||.||....... ... .-...|+++..+.++..++|..++..
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 111 123455666665544321 111 22346999999999999999998754
No 87
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.09 E-value=3e-05 Score=75.96 Aligned_cols=185 Identities=17% Similarity=0.211 Sum_probs=117.6
Q ss_pred CCCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEE-EEEeCCCCChHHHHHHH--
Q 007268 150 NKDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVV-LSEVSESRDVRKIQGEI-- 226 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~-wv~vs~~~~~~~~~~~i-- 226 (610)
|.....++|.+..+.-|.+.+.....+....+|++|.|||+-|+.++...-..+.|.+.+ =.++|......-+-..+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~ 111 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN 111 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC
Confidence 344678899999999999999887788999999999999999999998876655666543 34554433222111111
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHh-CCCe-EEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEecccc-cccccCCc
Q 007268 227 ADKLGLKFDVESESGRARILYDRLK-KEER-ILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARSEE-VLSGEMES 301 (610)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~-~~kr-~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-va~~~~~~ 301 (610)
..++..... .... .-++ -++|||+++.. +.|..+...+-+....++.|+.+..-. +.......
T Consensus 112 fakl~~~~~------------~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 112 FAKLTVLLK------------RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred HHHHhhccc------------cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 000000000 0000 0133 47889999865 578887666555455666655554433 32222344
Q ss_pred cceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 302 RKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 302 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
...+..++|..++...-+...+..+.-.-+ .+..+.|++.++|.-
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDL 224 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcH
Confidence 567999999999999999988853322222 356778999998854
No 88
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=5.7e-05 Score=83.79 Aligned_cols=197 Identities=15% Similarity=0.172 Sum_probs=110.7
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++|.+..+..|.+++..++. +.+.++|+.|+||||+|+.+++..-..+..+. .+++.......|...
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g 85 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEG 85 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcC
Confidence 3456889999999999999887665 56789999999999999999887543211100 000001111111110
Q ss_pred hCCC-----CCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEE-Eecccccccc
Q 007268 230 LGLK-----FDVESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLF-TARSEEVLSG 297 (610)
Q Consensus 230 l~~~-----~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~Iiv-TTR~~~va~~ 297 (610)
-..+ .......+.+..+.+.+. .+++-++|+|+++... ..+.+...+-.-...+.+|+ ||....+...
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 0000 000011122333333332 2355689999997553 34444333322233455554 5444544433
Q ss_pred cCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch-HHHHHHHH
Q 007268 298 EMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP-VSIVTVAR 355 (610)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~i~~ 355 (610)
.......+++.+++.++....+...+......- ..+.+..|++.++|.. .|+..+-.
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-SDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344556899999999999988887664222111 1356678889999866 45555433
No 89
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=0.0001 Score=81.07 Aligned_cols=194 Identities=14% Similarity=0.176 Sum_probs=111.2
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++|-+..+..|..++..++. +.+.++|+.|+||||+|+.+++..-....... ..+... ...+.|...
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C----~~C~~i~~~ 85 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGEC----SSCKSIDND 85 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccc----hHHHHHHcC
Confidence 3456789999999999999986554 46889999999999999999987643211100 000000 011111111
Q ss_pred hCCC---CCC--CChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEecc-cccccc
Q 007268 230 LGLK---FDV--ESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARS-EEVLSG 297 (610)
Q Consensus 230 l~~~---~~~--~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~-~~va~~ 297 (610)
-..+ .+. ....+.+..+.+.+. .+++-++|+|+++... .++.+...+......+.+|++|.. ..+...
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 0000 000 011122223332221 2456689999997553 455555544443445556655533 333222
Q ss_pred cCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHH
Q 007268 298 EMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVT 352 (610)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 352 (610)
.......+++.+++.++..+.+.+.+...... -..+.+..|++.++|.+-.+..
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi~-id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 23345678999999999999988877422211 1236677899999998854433
No 90
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00014 Score=81.12 Aligned_cols=197 Identities=14% Similarity=0.123 Sum_probs=113.2
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++|.+..+..|..++..++. +.+.++|+.|+||||+|+.+++..-....... . ...+......+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHHHhcC
Confidence 3456788999999999999886553 67889999999999999999988654211100 0 0111112233333322
Q ss_pred hCCCC-----CCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEecc-cccccc
Q 007268 230 LGLKF-----DVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARS-EEVLSG 297 (610)
Q Consensus 230 l~~~~-----~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~va~~ 297 (610)
...+. ......+.++.+.+.+. .+++-++|+|+++.. ..++.+...+-.-...+.+|++|.+ ..+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 22110 01111223334433332 145568999999855 3444454443332334545544443 333322
Q ss_pred cCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 298 EMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
.......+.+.+++.++....+...+......- ..+.+..|++.++|.+..+...
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 234456788899999998888887664321111 1255778999999988644433
No 91
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.00042 Score=71.87 Aligned_cols=206 Identities=11% Similarity=0.068 Sum_probs=126.8
Q ss_pred CCcCccccHHHHHHHHHHhc----CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHH
Q 007268 152 DYEAFESRASILNEIMDALK----NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
.+..++||+.++..+.+|+. .+..+.+-|.|-+|.|||.+...++.+......--++++++.-.-.....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 34678999999999988886 45678899999999999999999998876542223567887776666777777777
Q ss_pred Hhh-CCCCCCCChhHHHHHHHHHHhCCC-eEEEEEeCCCCccc--chhh--cCCCCCCCCCeEEEEEecccc--------
Q 007268 228 DKL-GLKFDVESESGRARILYDRLKKEE-RILVILDNIWENLD--LLDV--GIPHGDDHKGCKVLFTARSEE-------- 293 (610)
Q Consensus 228 ~~l-~~~~~~~~~~~~~~~l~~~L~~~k-r~LLVLDdv~~~~~--~~~l--~~~l~~~~~gs~IivTTR~~~-------- 293 (610)
..+ ..........+....+..+..+.+ .+|+|+|..+.... -..+ ...++ .-+++++|+.---..
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp-~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP-KLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc-cCCcceeeeeeehhhhhHHHHHh
Confidence 766 111111122344555555555434 78999999874321 1111 11122 223455544321111
Q ss_pred -cccc-cCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHh
Q 007268 294 -VLSG-EMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALR 358 (610)
Q Consensus 294 -va~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~ 358 (610)
-... ..-....+...|.+.++-.++|..++.............+-++++|.|.---+..+....+
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 1110 1123457888999999999999999865444444444555566666655444444444443
No 92
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.05 E-value=3.7e-05 Score=76.89 Aligned_cols=154 Identities=17% Similarity=0.200 Sum_probs=80.0
Q ss_pred CccccHHHHHHHH---HHhc------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh
Q 007268 155 AFESRASILNEIM---DALK------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV 219 (610)
Q Consensus 155 ~~vGR~~~~~~L~---~~L~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~ 219 (610)
.++|.+..+++|. .+.. .+....+.++|++|+||||+|+.+++.......-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 4677776665553 3321 134567889999999999999999887532211111122222211
Q ss_pred HHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc----------cchhhcCCCCCCCCCeEEEEEe
Q 007268 220 RKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL----------DLLDVGIPHGDDHKGCKVLFTA 289 (610)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~----------~~~~l~~~l~~~~~gs~IivTT 289 (610)
++.... .+ .. ...+.+.+......+|++|+++... ..+.+...+........+|+++
T Consensus 84 -~l~~~~---~g-----~~----~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLVGEY---IG-----HT----AQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhhhhh---cc-----ch----HHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111110 00 00 1112222222223589999997521 2233333333333344555655
Q ss_pred cccccc------cccCCc-cceecCCCCCHHHHHHHHHHHhC
Q 007268 290 RSEEVL------SGEMES-RKNFPVGFLKEEEAWSLFKKMAG 324 (610)
Q Consensus 290 R~~~va------~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~ 324 (610)
...... +..... ...+.+++++.++-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 433220 011111 24688999999999999988774
No 93
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00018 Score=79.49 Aligned_cols=192 Identities=15% Similarity=0.138 Sum_probs=110.5
Q ss_pred CCCcCccccHHHHHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++|.+...+.|.+++..++ .+.+.++|+.|+|||++|+.+++..-..+..+ ..+++.....+.|...
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNG 85 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcC
Confidence 345789999999999999998654 45677899999999999999988754321110 0111111122222211
Q ss_pred hCCCC-----CCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEE-Eecccccccc
Q 007268 230 LGLKF-----DVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLF-TARSEEVLSG 297 (610)
Q Consensus 230 l~~~~-----~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TTR~~~va~~ 297 (610)
...+. ......+.+..+.+... .++.-++|+|+++.. ..+..+...+......+.+|+ ||....+...
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 11110 00111223334444332 245678899999855 334444433332233444444 5444444332
Q ss_pred cCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHH
Q 007268 298 EMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSI 350 (610)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (610)
.......+.+.+++.++....+...+......- ..+.+..|++.++|.+..+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i-~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEY-EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 334456788999999999999888774322111 1356678888998887543
No 94
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=0.00015 Score=78.08 Aligned_cols=168 Identities=17% Similarity=0.111 Sum_probs=103.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCe
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEER 255 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr 255 (610)
.-+.|+|..|+|||+|++.+++.......-..+++++. .++...+...++.. .+......+.+. ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~------~~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKT------HKEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHh------hhHHHHHHHHhc--cC
Confidence 46899999999999999999987654322234555543 45666666655421 022334444443 34
Q ss_pred EEEEEeCCCCcc---cc-hhhcCCCCC-CCCCeEEEEEecccccc-c-------ccCCccceecCCCCCHHHHHHHHHHH
Q 007268 256 ILVILDNIWENL---DL-LDVGIPHGD-DHKGCKVLFTARSEEVL-S-------GEMESRKNFPVGFLKEEEAWSLFKKM 322 (610)
Q Consensus 256 ~LLVLDdv~~~~---~~-~~l~~~l~~-~~~gs~IivTTR~~~va-~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (610)
-+||+||+.... .+ +.+...+.. ...|..||+|+...... . .-....-++.+++++.++-.+++.+.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 589999996432 22 222111111 12244688887654311 1 01223457889999999999999998
Q ss_pred hCCCCC-CchHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007268 323 AGDYVE-GSELEEVARNVVEECAGLPVSIVTVARAL 357 (610)
Q Consensus 323 ~~~~~~-~~~~~~~~~~I~~~c~GlPLai~~i~~~L 357 (610)
+..... ..-.+++..-|++.++|.|-.+.-+...+
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 853221 12335788899999999998776665443
No 95
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.03 E-value=2.7e-05 Score=80.48 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=64.1
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC--CChHHHHHHHHHhhCCCCCCCChh---HH---H-
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES--RDVRKIQGEIADKLGLKFDVESES---GR---A- 243 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~---~~---~- 243 (610)
+....++|+|++|+|||||++.+++....+ +|+..+|+.+.+. .++.++++.+...+-...-+.+.. .. +
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 345689999999999999999999988765 8998899988865 688999999844321111111111 11 1
Q ss_pred HHHHHHHhCCCeEEEEEeCCCCc
Q 007268 244 RILYDRLKKEERILVILDNIWEN 266 (610)
Q Consensus 244 ~~l~~~L~~~kr~LLVLDdv~~~ 266 (610)
........++++.+|++|.+...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 12222223589999999999644
No 96
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.99 E-value=9.1e-05 Score=69.69 Aligned_cols=100 Identities=21% Similarity=0.196 Sum_probs=68.3
Q ss_pred CcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCC
Q 007268 153 YEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGL 232 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (610)
..+.||-++.++++.-...+++.+-+.|.||+|+||||-+..+++..-...+-+++.-.++|+...+.-+-..|-...
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FA-- 103 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFA-- 103 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHH--
Confidence 467899999999988888888899999999999999999999988876544445566666665554443333221100
Q ss_pred CCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc
Q 007268 233 KFDVESESGRARILYDRLKKEERILVILDNIWEN 266 (610)
Q Consensus 233 ~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~ 266 (610)
+-+-.|..++.-++|||.+++.
T Consensus 104 ------------Q~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 104 ------------QKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred ------------HhhccCCCCceeEEEeeccchh
Confidence 0000111255668899999875
No 97
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.96 E-value=0.00011 Score=74.37 Aligned_cols=132 Identities=13% Similarity=0.060 Sum_probs=71.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeE
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERI 256 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~ 256 (610)
-+.++|++|+|||++|+.+++...........-|+.++. .++ +..+-. ... .....+.+. -..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g----~~~-~~~~~~~~~---a~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIG----HTA-PKTKEILKR---AMGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcc----cch-HHHHHHHHH---ccCc
Confidence 688999999999999988887765432222112443332 122 211111 111 112222222 2346
Q ss_pred EEEEeCCCCc-----------ccchhhcCCCCCCCCCeEEEEEecccccccc------c-CCccceecCCCCCHHHHHHH
Q 007268 257 LVILDNIWEN-----------LDLLDVGIPHGDDHKGCKVLFTARSEEVLSG------E-MESRKNFPVGFLKEEEAWSL 318 (610)
Q Consensus 257 LLVLDdv~~~-----------~~~~~l~~~l~~~~~gs~IivTTR~~~va~~------~-~~~~~~~~l~~L~~~ea~~L 318 (610)
+|+||++... ..+..+...+.....+.+||+++.....-.. . ......+.+++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 9999999632 1123333333334456677777654321100 0 01135789999999999999
Q ss_pred HHHHhC
Q 007268 319 FKKMAG 324 (610)
Q Consensus 319 f~~~~~ 324 (610)
+...+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988774
No 98
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.95 E-value=3.1e-05 Score=75.11 Aligned_cols=163 Identities=21% Similarity=0.198 Sum_probs=93.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEE 254 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~k 254 (610)
...+.|+|..|+|||.|.+.+++.......-..+++++. .++...+...+.. .....+.+.+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~--------~~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRD--------GEIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHT--------TSHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHc--------ccchhhhhhhh--c
Confidence 356899999999999999999998765433335667643 4455555554432 12344555554 3
Q ss_pred eEEEEEeCCCCcc---cchhhcCCCCC--CCCCeEEEEEecccccc-cc-------cCCccceecCCCCCHHHHHHHHHH
Q 007268 255 RILVILDNIWENL---DLLDVGIPHGD--DHKGCKVLFTARSEEVL-SG-------EMESRKNFPVGFLKEEEAWSLFKK 321 (610)
Q Consensus 255 r~LLVLDdv~~~~---~~~~l~~~l~~--~~~gs~IivTTR~~~va-~~-------~~~~~~~~~l~~L~~~ea~~Lf~~ 321 (610)
-=+|++||++... .|......+-+ ...|-+||+|+...... .. -....-.+++++++.++-.+++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 5689999997542 23221111100 12355799999665421 10 113345799999999999999999
Q ss_pred HhCCCCCCchHHHHHHHHHHHcCCchHHHHHHH
Q 007268 322 MAGDYVEGSELEEVARNVVEECAGLPVSIVTVA 354 (610)
Q Consensus 322 ~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~ 354 (610)
.+....-. -.++++.-|++.+.+..-.+..+-
T Consensus 178 ~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 178 KAKERGIE-LPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHHH
Confidence 88522111 223666777777766655554443
No 99
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.95 E-value=7.8e-05 Score=86.75 Aligned_cols=158 Identities=14% Similarity=0.214 Sum_probs=92.9
Q ss_pred CCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCC----CeEEE-EEeCCCCChHHHHHHH
Q 007268 152 DYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLF----DQVVL-SEVSESRDVRKIQGEI 226 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f----~~~~w-v~vs~~~~~~~~~~~i 226 (610)
...+++||+.++.+++..|.......+.++|++|+|||++|..++++......+ ...+| ++++. +
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~----------l 240 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA----------L 240 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH----------H
Confidence 346799999999999999987666778899999999999999999886442111 22222 22211 1
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHh-CCCeEEEEEeCCCCcc---------cchhhcCCCCCCCCCeEEEEEecccccc-
Q 007268 227 ADKLGLKFDVESESGRARILYDRLK-KEERILVILDNIWENL---------DLLDVGIPHGDDHKGCKVLFTARSEEVL- 295 (610)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~-~~kr~LLVLDdv~~~~---------~~~~l~~~l~~~~~gs~IivTTR~~~va- 295 (610)
+. +.... ......+..+.+.+. .+++.+|++|+++... +...+..+....+ .-++|-+|.....-
T Consensus 241 ~a--~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 241 IA--GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEYRK 316 (852)
T ss_pred hh--cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHHHH
Confidence 10 00000 112223444555553 2468999999997432 1112223322222 23455554443320
Q ss_pred -----cccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 296 -----SGEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 296 -----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
.........+.++..+.++...++....
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1112234568899999999999988764
No 100
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.94 E-value=0.00043 Score=66.82 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=41.3
Q ss_pred CCCcCccccHHHHHHHHHHh----cCCCceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 151 KDYEAFESRASILNEIMDAL----KNPNVNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
.....++|-+...+.|++-. ......-+.+||..|+|||++++.+.+....+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 34567899888888776543 34556778899999999999999999988765
No 101
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.93 E-value=6.2e-05 Score=87.28 Aligned_cols=158 Identities=13% Similarity=0.195 Sum_probs=91.6
Q ss_pred CCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCC----C-eEEEEEeCCCCChHHHHHHH
Q 007268 152 DYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLF----D-QVVLSEVSESRDVRKIQGEI 226 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f----~-~~~wv~vs~~~~~~~~~~~i 226 (610)
...+++||+.++.++++.|.......+.++|++|+|||++|+.++......... . .+++++++.-..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a-------- 247 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA-------- 247 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh--------
Confidence 356799999999999999987666778899999999999999999987532111 2 233333332110
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHh-CCCeEEEEEeCCCCcc---------cchhhcCCCCCCCCCeEEEEEecccccc-
Q 007268 227 ADKLGLKFDVESESGRARILYDRLK-KEERILVILDNIWENL---------DLLDVGIPHGDDHKGCKVLFTARSEEVL- 295 (610)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~-~~kr~LLVLDdv~~~~---------~~~~l~~~l~~~~~gs~IivTTR~~~va- 295 (610)
+.... ......+..+.+.+. .+++.+|++|+++... +...+..+....+ .-++|-+|......
T Consensus 248 ----g~~~~-g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 248 ----GAKYR-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYRQ 321 (857)
T ss_pred ----ccchh-hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHHH
Confidence 00000 111223344444432 2568999999997442 1122323332222 33555555443320
Q ss_pred -----cccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 296 -----SGEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 296 -----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
.........+.+...+.++...+++...
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1111223356677778899988887654
No 102
>CHL00181 cbbX CbbX; Provisional
Probab=97.92 E-value=0.00016 Score=72.98 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=71.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCe
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEER 255 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr 255 (610)
..+.++|++|+|||++|+.+++.......-...-|+.++. .++.... .+. .. .....+.+. ...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~-----~~-~~~~~~l~~---a~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGH-----TA-PKTKEVLKK---AMG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hcc-----ch-HHHHHHHHH---ccC
Confidence 4588999999999999999988754322111112444431 1222111 111 01 111222222 123
Q ss_pred EEEEEeCCCCc-----------ccchhhcCCCCCCCCCeEEEEEeccccccc------c-cCCccceecCCCCCHHHHHH
Q 007268 256 ILVILDNIWEN-----------LDLLDVGIPHGDDHKGCKVLFTARSEEVLS------G-EMESRKNFPVGFLKEEEAWS 317 (610)
Q Consensus 256 ~LLVLDdv~~~-----------~~~~~l~~~l~~~~~gs~IivTTR~~~va~------~-~~~~~~~~~l~~L~~~ea~~ 317 (610)
-+|+||++... +....+...+.....+.+||+++....... . .......+.+++++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 59999999642 112223233333345567777765433210 0 01123579999999999999
Q ss_pred HHHHHhC
Q 007268 318 LFKKMAG 324 (610)
Q Consensus 318 Lf~~~~~ 324 (610)
++...+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9888874
No 103
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00019 Score=73.75 Aligned_cols=167 Identities=13% Similarity=0.073 Sum_probs=91.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCC-----CC---CCChhHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLK-----FD---VESESGRARIL 246 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~~---~~~~~~~~~~l 246 (610)
...+.++|+.|+|||++|..+++..--...... .+...-...+.+...-..+ +. ..-..+.+..+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l 94 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVREL 94 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHH
Confidence 467889999999999999999987643211100 0000000111111100000 00 00112233334
Q ss_pred HHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEecccc-cccccCCccceecCCCCCHHHHHHHH
Q 007268 247 YDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARSEE-VLSGEMESRKNFPVGFLKEEEAWSLF 319 (610)
Q Consensus 247 ~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf 319 (610)
.+.+. .+++-++|+|+++.. ...+.+...+-.-..++.+|+||.+.. +.....+....+.+.+++.+++.+.+
T Consensus 95 ~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L 174 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWL 174 (328)
T ss_pred HHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 44332 134455678999854 334444333322234566777766653 43333455678999999999999999
Q ss_pred HHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 320 KKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
....... ..+.+..++..++|.|+....+
T Consensus 175 ~~~~~~~-----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 175 QQALPES-----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHhcccC-----ChHHHHHHHHHcCCCHHHHHHH
Confidence 8764211 1234567889999999755444
No 104
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.90 E-value=0.00056 Score=69.22 Aligned_cols=164 Identities=17% Similarity=0.139 Sum_probs=105.4
Q ss_pred cCccccHHHHHHHHHHhcCCC---ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhh
Q 007268 154 EAFESRASILNEIMDALKNPN---VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKL 230 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~~~---~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (610)
+.|.+|+..+..|...+.... +..|.|+|.+|.|||.+.+++.+.... ..+|+++-..++...++..|+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 467799999999999887433 345689999999999999999988732 468999999999999999999998
Q ss_pred C-CCCCCCChh---HHHHHHHHHHh-------CCCeEEEEEeCCCCcccchhhcCCC------CCCCCCeEEEEEecccc
Q 007268 231 G-LKFDVESES---GRARILYDRLK-------KEERILVILDNIWENLDLLDVGIPH------GDDHKGCKVLFTARSEE 293 (610)
Q Consensus 231 ~-~~~~~~~~~---~~~~~l~~~L~-------~~kr~LLVLDdv~~~~~~~~l~~~l------~~~~~gs~IivTTR~~~ 293 (610)
+ .+.++.... +.+......+. .++.++|||||++...+.+.+..+. ....+.. +|+++-...
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecccc
Confidence 6 332222111 22222222221 2468999999998765544321100 0112233 333333221
Q ss_pred --ccc--ccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 294 --VLS--GEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 294 --va~--~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
... .......++....-+.++...++.+.-
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 111 122233467788889999999988753
No 105
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.89 E-value=0.00041 Score=74.12 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=103.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCe
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEER 255 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr 255 (610)
..+.|+|..|+|||+|++.+++....+..-..+++++. .++...+...+... ....+.+.+. +.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYR--SV 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHH--hC
Confidence 56899999999999999999998765422235666653 33444454444321 1233444443 23
Q ss_pred EEEEEeCCCCccc---c-hhhcCCCCC-CCCCeEEEEEecccccc-c-------ccCCccceecCCCCCHHHHHHHHHHH
Q 007268 256 ILVILDNIWENLD---L-LDVGIPHGD-DHKGCKVLFTARSEEVL-S-------GEMESRKNFPVGFLKEEEAWSLFKKM 322 (610)
Q Consensus 256 ~LLVLDdv~~~~~---~-~~l~~~l~~-~~~gs~IivTTR~~~va-~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (610)
-+|||||++.... + +.+...+.. ...+..+|+|+....-. . .-......+.+++.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4899999975321 1 112111110 11345688887653211 0 11122357899999999999999998
Q ss_pred hCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHh------cC--CHHHHHHHHHHh
Q 007268 323 AGDYVEGSELEEVARNVVEECAGLPVSIVTVARALR------NK--GIREWKDALEQL 372 (610)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~------~~--~~~~w~~~l~~l 372 (610)
+...... -.+++...|++.+.|.+-.+.-+-..|. ++ +......++...
T Consensus 281 ~~~~~~~-l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 281 AEEEGLE-LPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHcCCC-CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 8532211 1246778888998887765443322221 12 555666666554
No 106
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.89 E-value=0.00011 Score=77.86 Aligned_cols=138 Identities=22% Similarity=0.181 Sum_probs=88.7
Q ss_pred ccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCC
Q 007268 158 SRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVE 237 (610)
Q Consensus 158 GR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 237 (610)
.|...+.++.+.+..... ++.|.|+-++||||+++.+....... .+++...+......-+.+
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d------------ 82 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLD------------ 82 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHH------------
Confidence 344556667776654433 99999999999999996666654432 555544332211111011
Q ss_pred ChhHHHHHHHHHHhCCCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEecccccc-----cccCCccceecCCCCCH
Q 007268 238 SESGRARILYDRLKKEERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEVL-----SGEMESRKNFPVGFLKE 312 (610)
Q Consensus 238 ~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va-----~~~~~~~~~~~l~~L~~ 312 (610)
......+.-. .++.+++||.|.....|......+.+.++. +|++|+-+.... ....+....+.+-||+.
T Consensus 83 ----~~~~~~~~~~-~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF 156 (398)
T COG1373 83 ----LLRAYIELKE-REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSF 156 (398)
T ss_pred ----HHHHHHHhhc-cCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCH
Confidence 1111111111 267899999999999999887777776666 888888776653 22234567899999999
Q ss_pred HHHHHHH
Q 007268 313 EEAWSLF 319 (610)
Q Consensus 313 ~ea~~Lf 319 (610)
.|-..+.
T Consensus 157 ~Efl~~~ 163 (398)
T COG1373 157 REFLKLK 163 (398)
T ss_pred HHHHhhc
Confidence 9987653
No 107
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.87 E-value=0.00032 Score=74.02 Aligned_cols=177 Identities=18% Similarity=0.262 Sum_probs=100.6
Q ss_pred CCCCCcCccccHHHHHHHHHHhc----C---------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 149 PNKDYEAFESRASILNEIMDALK----N---------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 149 ~~~~~~~~vGR~~~~~~L~~~L~----~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
|.....++.|-+..+++|.+.+. . ..++-+.++|++|+|||+||+.+++..... | +.+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f---i~i~~-- 212 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F---IRVVG-- 212 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEeh--
Confidence 33445677888888887776553 1 245779999999999999999999875432 2 22211
Q ss_pred CCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc------------c----chhhcCCCC--
Q 007268 216 SRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL------------D----LLDVGIPHG-- 277 (610)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~------------~----~~~l~~~l~-- 277 (610)
..+... .++ .....+..+........+.+|+||+++... . +..+...+.
T Consensus 213 ----s~l~~k---~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 ----SEFVQK---YLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred ----HHHHHH---hcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 111111 111 112234444444445678999999986421 0 111111111
Q ss_pred CCCCCeEEEEEeccccccc-ccC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 278 DDHKGCKVLFTARSEEVLS-GEM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 278 ~~~~gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
....+..||+||....... ... .-...+.++..+.++..++|..+.......++ -....+++.+.|..
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d--vd~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE--VDLEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc--cCHHHHHHHcCCCC
Confidence 1234567888887654331 111 22356889999999988888877653322221 11345666666653
No 108
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.85 E-value=4e-05 Score=86.92 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=93.9
Q ss_pred CcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCC-C---CCeEEEEEeCCCCChHHHHHHHHH
Q 007268 153 YEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDK-L---FDQVVLSEVSESRDVRKIQGEIAD 228 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~---f~~~~wv~vs~~~~~~~~~~~i~~ 228 (610)
..+++||++++.++++.|.......+.++|++|+|||++|+.+++...... + .++.+|.. ++. .++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~lla 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----SLLA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----HHhc
Confidence 357899999999999999876556778999999999999999998753321 1 13444421 111 1110
Q ss_pred hhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc----------ccchhhcCCCCCCCCCeEEEEEecccccc---
Q 007268 229 KLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN----------LDLLDVGIPHGDDHKGCKVLFTARSEEVL--- 295 (610)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~----------~~~~~l~~~l~~~~~gs~IivTTR~~~va--- 295 (610)
+... .......+..+.+.+.+.++.+|++|+++.. .+...+..++... ..-++|-+|......
T Consensus 256 --G~~~-~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 256 --GTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIF 331 (758)
T ss_pred --ccch-hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHHh
Confidence 1110 1112234445555555456789999999732 1111122222222 234555555443321
Q ss_pred ---cccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 296 ---SGEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 296 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
.........+.+++++.++..+++....
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1111234579999999999999998754
No 109
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.83 E-value=5.5e-05 Score=79.53 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=72.9
Q ss_pred cCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCC
Q 007268 154 EAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLK 233 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (610)
..+++.++.++.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||.+++..+..+++..+.-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 45677888999999988743 578889999999999999999988766678889999999888766654422100 000
Q ss_pred CCCCChhHHHHHHHHHHh-C-CCeEEEEEeCCCCc
Q 007268 234 FDVESESGRARILYDRLK-K-EERILVILDNIWEN 266 (610)
Q Consensus 234 ~~~~~~~~~~~~l~~~L~-~-~kr~LLVLDdv~~~ 266 (610)
. .-....+..+..... . +++++||+|++...
T Consensus 252 y--~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 F--RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred e--EecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 001112222222222 1 46899999999754
No 110
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.82 E-value=0.00019 Score=76.42 Aligned_cols=177 Identities=20% Similarity=0.257 Sum_probs=99.8
Q ss_pred CCCCCcCccccHHHHHHHHHHhc----C---------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 149 PNKDYEAFESRASILNEIMDALK----N---------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 149 ~~~~~~~~vGR~~~~~~L~~~L~----~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
|.....++.|.+..+++|.+.+. . ..++-+.|+|++|+|||++|+.+++..... | +.+..+.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f---i~V~~se 252 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F---LRVVGSE 252 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E---EEEecch
Confidence 33445667888888888877663 1 235678899999999999999999976532 3 2221111
Q ss_pred CCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc----------------chhhcCCCC--
Q 007268 216 SRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD----------------LLDVGIPHG-- 277 (610)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~----------------~~~l~~~l~-- 277 (610)
+.... ++ .....+..+.+....+.+.+|+||+++.... +..+...+.
T Consensus 253 ------L~~k~---~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 253 ------LIQKY---LG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred ------hhhhh---cc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 11110 01 0112233444444445789999999753210 011111110
Q ss_pred CCCCCeEEEEEeccccccccc-C---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 278 DDHKGCKVLFTARSEEVLSGE-M---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 278 ~~~~gs~IivTTR~~~va~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
....+..||.||......... . .-...+.+...+.++..++|..++......++ -....++..+.|+-
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d--vdl~~la~~t~g~s 389 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED--VDLEEFIMAKDELS 389 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC--cCHHHHHHhcCCCC
Confidence 123356788888765443211 1 22457899999999999999988753322211 11234555665543
No 111
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.81 E-value=7e-05 Score=66.11 Aligned_cols=69 Identities=25% Similarity=0.291 Sum_probs=42.2
Q ss_pred EEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCC-eE
Q 007268 178 LLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEE-RI 256 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~k-r~ 256 (610)
|.|+|++|+|||++|+.+++.... ..+.++.+...+. ........+..+.+...... +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc---------------cccccccccccccccccccccce
Confidence 579999999999999999999752 2445544432110 01111223333334433333 89
Q ss_pred EEEEeCCCCc
Q 007268 257 LVILDNIWEN 266 (610)
Q Consensus 257 LLVLDdv~~~ 266 (610)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999999744
No 112
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.81 E-value=0.0005 Score=74.43 Aligned_cols=180 Identities=17% Similarity=0.156 Sum_probs=105.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCe
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEER 255 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr 255 (610)
..+.|+|++|+|||+|++.+++.......-..+++++.. ++...+...+... ....+.+.+. +.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 212 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--SV 212 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--cC
Confidence 568999999999999999999987754222345666543 3334444443211 1233444444 34
Q ss_pred EEEEEeCCCCccc---c-hhhcCCCCC-CCCCeEEEEEecccccc--------cccCCccceecCCCCCHHHHHHHHHHH
Q 007268 256 ILVILDNIWENLD---L-LDVGIPHGD-DHKGCKVLFTARSEEVL--------SGEMESRKNFPVGFLKEEEAWSLFKKM 322 (610)
Q Consensus 256 ~LLVLDdv~~~~~---~-~~l~~~l~~-~~~gs~IivTTR~~~va--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (610)
-+|||||++.... + +.+...+.. ...|..||+||....-. ..-......+.+++.+.++-..++.+.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 5899999964311 1 122111100 11244588887654211 111223457999999999999999998
Q ss_pred hCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHh------cC--CHHHHHHHHHHh
Q 007268 323 AGDYVEGSELEEVARNVVEECAGLPVSIVTVARALR------NK--GIREWKDALEQL 372 (610)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~------~~--~~~~w~~~l~~l 372 (610)
+..... .-.+++..-|++.++|..-.+.-+-..|. ++ +......++..+
T Consensus 293 ~~~~~~-~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 293 AEEEGI-DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHcCC-CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 853211 11236788899999988765443322221 22 566666666654
No 113
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.79 E-value=0.00011 Score=65.25 Aligned_cols=91 Identities=29% Similarity=0.215 Sum_probs=53.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEE 254 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~k 254 (610)
...+.|+|++|+||||+++.++....... ..++++..+........... ...................+.......+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 35789999999999999999998876542 34666655544322211111 1111111122222333444555554434
Q ss_pred eEEEEEeCCCCccc
Q 007268 255 RILVILDNIWENLD 268 (610)
Q Consensus 255 r~LLVLDdv~~~~~ 268 (610)
..+|++|+++....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 59999999987643
No 114
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.0012 Score=71.00 Aligned_cols=182 Identities=16% Similarity=0.163 Sum_probs=105.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEE 254 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~k 254 (610)
...+.|+|.+|+|||+|++.+++.......-..++|++. .++...+...+... ......+.+. .+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~-~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYR-KK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHH-hc
Confidence 346999999999999999999998765322235677754 34555665554321 1223333333 24
Q ss_pred eEEEEEeCCCCcc---cc-hhhcCCCCC-CCCCeEEEEEecccc-cc----cc---cCCccceecCCCCCHHHHHHHHHH
Q 007268 255 RILVILDNIWENL---DL-LDVGIPHGD-DHKGCKVLFTARSEE-VL----SG---EMESRKNFPVGFLKEEEAWSLFKK 321 (610)
Q Consensus 255 r~LLVLDdv~~~~---~~-~~l~~~l~~-~~~gs~IivTTR~~~-va----~~---~~~~~~~~~l~~L~~~ea~~Lf~~ 321 (610)
.-+|++||++... .+ ..+...+.. ...|..||+||.... -. .. -......+.+++.+.++-..++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 5689999997431 11 112111110 112346888875332 11 10 112345789999999999999998
Q ss_pred HhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHH------hcC--CHHHHHHHHHHh
Q 007268 322 MAGDYVEGSELEEVARNVVEECAGLPVSIVTVARAL------RNK--GIREWKDALEQL 372 (610)
Q Consensus 322 ~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L------~~~--~~~~w~~~l~~l 372 (610)
.+..... .-.+++..-|++.+.|..-.+.-+-..| .++ +......++..+
T Consensus 275 ~~~~~~~-~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 275 MLEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHhcCC-CCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 8753211 1124677888888887655444332222 122 666666666654
No 115
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.76 E-value=0.00037 Score=76.41 Aligned_cols=201 Identities=19% Similarity=0.274 Sum_probs=108.3
Q ss_pred CCCCcCccccHHHHHHHHHHhc---C---------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 150 NKDYEAFESRASILNEIMDALK---N---------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~---~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
.....++.|-++..+++.+++. . ..++-+.++|++|+|||+||+.+++..... | +.++.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--~-----~~i~~-- 121 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISG-- 121 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC--e-----eeccH--
Confidence 3445677887776665544332 1 234568999999999999999999875432 2 22221
Q ss_pred ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc------------cc----hhhcCCCC--CC
Q 007268 218 DVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL------------DL----LDVGIPHG--DD 279 (610)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~------------~~----~~l~~~l~--~~ 279 (610)
.++.... .+ .....+..+.+......+++|+||+++... .+ ..+...+. ..
T Consensus 122 --~~~~~~~---~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 122 --SDFVEMF---VG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred --HHHHHHH---hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 1111110 01 011233444444444568999999996431 01 11111111 12
Q ss_pred CCCeEEEEEeccccccc-ccC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCc-hHHHHHHH
Q 007268 280 HKGCKVLFTARSEEVLS-GEM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGL-PVSIVTVA 354 (610)
Q Consensus 280 ~~gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~i~ 354 (610)
..+..||.||....... ... .-...+.++..+.++-.++|..++......+. .....+++.+.|. +--|..+.
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCCHHHHHHHH
Confidence 23455666776543221 111 23457889999999999999988754322221 2244788888774 34444433
Q ss_pred H---HH--h-cC---CHHHHHHHHHHh
Q 007268 355 R---AL--R-NK---GIREWKDALEQL 372 (610)
Q Consensus 355 ~---~L--~-~~---~~~~w~~~l~~l 372 (610)
. .. + ++ +...+...++..
T Consensus 269 ~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 269 NEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 2 11 1 22 556666666654
No 116
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.0011 Score=67.81 Aligned_cols=178 Identities=15% Similarity=0.118 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCe-----EEEEEeCCCCChHHHHHHHHHhhCCCC
Q 007268 161 SILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQ-----VVLSEVSESRDVRKIQGEIADKLGLKF 234 (610)
Q Consensus 161 ~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~-----~~wv~vs~~~~~~~~~~~i~~~l~~~~ 234 (610)
...+.|...+..++. ..+.++|+.|+||+++|..+++..-......+ +-|+..+..+++.. +...+
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~--------i~~~p 82 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL--------VSFIP 82 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE--------EecCC
Confidence 445667777766554 56889999999999999999877543221110 00010011111000 00000
Q ss_pred CC-------CChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEecc-cccccccCC
Q 007268 235 DV-------ESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARS-EEVLSGEME 300 (610)
Q Consensus 235 ~~-------~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~-~~va~~~~~ 300 (610)
+. .-..+.+..+.+.+. .+++-++|+|+++... .-+.+...+-.-..++.+|++|.+ ..+.....+
T Consensus 83 ~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 83 NRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS 162 (319)
T ss_pred CcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh
Confidence 00 011223344444442 2456799999997552 222222222222335556666654 444443445
Q ss_pred ccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 301 SRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 301 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
....+.+.+++.+++.+.+... + .+ ...+..++..++|.|+....+
T Consensus 163 RCq~i~~~~~~~~~~~~~L~~~-~---~~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 163 RCQRLEFKLPPAHEALAWLLAQ-G---VS---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hheEeeCCCcCHHHHHHHHHHc-C---CC---hHHHHHHHHHcCCCHHHHHHH
Confidence 5678999999999999888763 1 11 133567899999999866443
No 117
>CHL00176 ftsH cell division protein; Validated
Probab=97.69 E-value=0.00096 Score=74.54 Aligned_cols=171 Identities=20% Similarity=0.269 Sum_probs=96.3
Q ss_pred CcCccccHHHHHHHH---HHhcCC---------CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChH
Q 007268 153 YEAFESRASILNEIM---DALKNP---------NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVR 220 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~---~~L~~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 220 (610)
..++.|.++..+++. +.+..+ .++-|.++|++|+|||+||+.++...... |+.++. .
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~----s 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISG----S 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccH----H
Confidence 345677766555544 444321 24568999999999999999998875421 222221 1
Q ss_pred HHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc------------c----chhhcCCCC--CCCCC
Q 007268 221 KIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL------------D----LLDVGIPHG--DDHKG 282 (610)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~------------~----~~~l~~~l~--~~~~g 282 (610)
++.... .+ .....+..+.+......+++|+||+++... . +..+...+. ....+
T Consensus 251 ~f~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFVEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111100 01 011233444444455678999999996431 1 122221111 12345
Q ss_pred eEEEEEeccccccc-ccC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCC
Q 007268 283 CKVLFTARSEEVLS-GEM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAG 345 (610)
Q Consensus 283 s~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~G 345 (610)
..||.||....... ... .-...+.+...+.++-.++++.++......+ ......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCC
Confidence 56777776643321 111 1235788899999999999998885422222 2345678888877
No 118
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0019 Score=66.13 Aligned_cols=176 Identities=10% Similarity=0.050 Sum_probs=99.1
Q ss_pred HHHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCC-----C-
Q 007268 162 ILNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLK-----F- 234 (610)
Q Consensus 162 ~~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~- 234 (610)
..+.|...+..++ .....++|+.|+||+++|..++...--...... .....-...+.+...-..+ +
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 3456666666555 467789999999999999999887643221100 0001111111111110000 0
Q ss_pred C-CCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEeccc-ccccccCCccceec
Q 007268 235 D-VESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARSE-EVLSGEMESRKNFP 306 (610)
Q Consensus 235 ~-~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~~-~va~~~~~~~~~~~ 306 (610)
. ..-..+.++.+.+.+. .+++=++|+|+++... ..+.+...+-.-..++.+|++|.+. .+.....+....+.
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 0 0112233444444443 2566688899997552 3444433333334455666666554 44433445567899
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHH
Q 007268 307 VGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSI 350 (610)
Q Consensus 307 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (610)
+.+++.+++.+.+...... + ...+...+..++|.|+..
T Consensus 163 ~~~~~~~~~~~~L~~~~~~----~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 163 IHPPEEQQALDWLQAQSSA----E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCCHHHHHHHHHHHhcc----C--hHHHHHHHHHcCCCHHHH
Confidence 9999999999998876421 1 123556788999999633
No 119
>PRK06620 hypothetical protein; Validated
Probab=97.68 E-value=0.00022 Score=68.85 Aligned_cols=137 Identities=16% Similarity=0.054 Sum_probs=78.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCe
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEER 255 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr 255 (610)
+.+.|+|++|+|||+|++.+++.... .++. ..... . +.+. ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~~--------------------~-------~~~~--~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFFN--------------------E-------EILE--KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhhc--------------------h-------hHHh--cC
Confidence 67999999999999999987765431 1111 00000 0 0111 23
Q ss_pred EEEEEeCCCCccc--chhhcCCCCCCCCCeEEEEEecccccccc------cCCccceecCCCCCHHHHHHHHHHHhCCCC
Q 007268 256 ILVILDNIWENLD--LLDVGIPHGDDHKGCKVLFTARSEEVLSG------EMESRKNFPVGFLKEEEAWSLFKKMAGDYV 327 (610)
Q Consensus 256 ~LLVLDdv~~~~~--~~~l~~~l~~~~~gs~IivTTR~~~va~~------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 327 (610)
-+|++||++...+ +-.+...+ ...|..||+|++.....-. -.....++++++++.++-..++.+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNII--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHH--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 5788899974321 11111111 1345678998876543210 112234799999999998888888774221
Q ss_pred CCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 328 EGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 328 ~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
- .-.+++..-|++.+.|.--.+.-+
T Consensus 165 l-~l~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 165 V-TISRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred C-CCCHHHHHHHHHHccCCHHHHHHH
Confidence 1 112366777888877765544433
No 120
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.0068 Score=59.25 Aligned_cols=180 Identities=18% Similarity=0.176 Sum_probs=105.3
Q ss_pred CCCCcCccccHHHHHHHHHHhc-----CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHH
Q 007268 150 NKDYEAFESRASILNEIMDALK-----NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQG 224 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~-----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (610)
|.....|+|.++..+.|.=.+. ...+--|.++|++|.||||||.-+++...+. + -++.+....-.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~leK~---- 91 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALEKP---- 91 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----EecccccccCh----
Confidence 3456789999998888765554 4556789999999999999999999998765 1 11111111101
Q ss_pred HHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc-c--------chhhcCCC-CCCC-----------CCe
Q 007268 225 EIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL-D--------LLDVGIPH-GDDH-----------KGC 283 (610)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~-~--------~~~l~~~l-~~~~-----------~gs 283 (610)
..+..+...|. ..=+|.+|.++... . .+++..-. ...+ +-+
T Consensus 92 ----------------gDlaaiLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 92 ----------------GDLAAILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ----------------hhHHHHHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 11112222222 33456667665331 0 11110000 0011 123
Q ss_pred EEEEEecccccccccC-CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHh
Q 007268 284 KVLFTARSEEVLSGEM-ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALR 358 (610)
Q Consensus 284 ~IivTTR~~~va~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~ 358 (610)
-|=.|||.-.+..... .-..+.+++-.+.+|-.++..+.+..-.- +-.++.+.+|++...|-|--..-+.+..+
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3556888776542111 22357888899999999999988742111 11135678999999999976555555444
No 121
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.66 E-value=0.0024 Score=73.77 Aligned_cols=158 Identities=23% Similarity=0.234 Sum_probs=84.1
Q ss_pred cCccccHHHHHHHHHHhc------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHH
Q 007268 154 EAFESRASILNEIMDALK------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
..++|.++.++.|.+++. ..+.+++.++|++|+|||++|+.+++..... | +-++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~--~---~~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK--F---VRFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC--e---EEEeCCCcccHHHHcCC--
Confidence 357788888888887664 2244689999999999999999999987532 3 22223332222222110
Q ss_pred HhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc---------chhhcC-----CCCCC-------CCCeEEE
Q 007268 228 DKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD---------LLDVGI-----PHGDD-------HKGCKVL 286 (610)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~---------~~~l~~-----~l~~~-------~~gs~Ii 286 (610)
...............+. ... .++-+|+||.++.... +-.+.. .+.+. ..+.-+|
T Consensus 393 ---~~~~~g~~~g~i~~~l~-~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ---RRTYVGAMPGRIIQGLK-KAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ---CCceeCCCCchHHHHHH-HhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 00001111111122222 112 2334789999875421 111111 11111 1234445
Q ss_pred EEecccc-cccccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 287 FTARSEE-VLSGEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 287 vTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
.||.... +..........+.+.+++.++-.+++.++.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5554432 222223444689999999999888887754
No 122
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.66 E-value=0.00022 Score=79.04 Aligned_cols=201 Identities=12% Similarity=0.097 Sum_probs=104.5
Q ss_pred CCCCcCccccHHHHHHHHHHhcC-----CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC---CCChHH
Q 007268 150 NKDYEAFESRASILNEIMDALKN-----PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE---SRDVRK 221 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~~-----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~---~~~~~~ 221 (610)
|.....++|.++.++++..|+.. ...+++.|+|++|+||||+++.++..... +..-|++... ..+...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~----~~~Ew~npv~~~~~~~~~~ 155 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI----QVQEWSNPTLPDFQKNDHK 155 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh----HHHHHhhhhhhcccccccc
Confidence 44567899999999999998873 23467999999999999999999987542 2222321100 000000
Q ss_pred HHHHHHHhhCCCCCCCChhHHHHHHHHHHh----------CCCeEEEEEeCCCCcc-----cchhhcC-CCCCCCCCeEE
Q 007268 222 IQGEIADKLGLKFDVESESGRARILYDRLK----------KEERILVILDNIWENL-----DLLDVGI-PHGDDHKGCKV 285 (610)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----------~~kr~LLVLDdv~~~~-----~~~~l~~-~l~~~~~gs~I 285 (610)
+...+..++... .+..+....+..... .+++.+|+||++.+.. .+..+.. .+...+.-.-|
T Consensus 156 ~~~s~~~~~~~~---~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI 232 (637)
T TIGR00602 156 VTLSLESCFSNF---QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLV 232 (637)
T ss_pred cchhhhhccccc---cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEE
Confidence 111111221111 011111111111111 2467799999995432 2333333 22222222335
Q ss_pred EEEecccc---------cc------cccC--CccceecCCCCCHHHHHHHHHHHhCCCCC---Cc---hHHHHHHHHHHH
Q 007268 286 LFTARSEE---------VL------SGEM--ESRKNFPVGFLKEEEAWSLFKKMAGDYVE---GS---ELEEVARNVVEE 342 (610)
Q Consensus 286 ivTTR~~~---------va------~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~---~~---~~~~~~~~I~~~ 342 (610)
++||-+.. .. .... .....|.+.|++...-.+.+.+.+..... .. ...+....|+..
T Consensus 233 ~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~ 312 (637)
T TIGR00602 233 FIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQG 312 (637)
T ss_pred EEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHh
Confidence 55553211 10 0111 12346899999999988888777642110 11 013566778888
Q ss_pred cCCchHHHHHHHHHH
Q 007268 343 CAGLPVSIVTVARAL 357 (610)
Q Consensus 343 c~GlPLai~~i~~~L 357 (610)
++|---.+.....++
T Consensus 313 s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 313 CSGDIRSAINSLQFS 327 (637)
T ss_pred CCChHHHHHHHHHHH
Confidence 888765444444443
No 123
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.001 Score=68.70 Aligned_cols=161 Identities=10% Similarity=0.073 Sum_probs=88.3
Q ss_pred Cccc-cHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCC
Q 007268 155 AFES-RASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGL 232 (610)
Q Consensus 155 ~~vG-R~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (610)
.++| -+..++.|...+..++. +...++|+.|+|||++|..+++..-........ ........+.+...-..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~hp 78 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNHP 78 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCCC
Confidence 3455 66677788888776654 566999999999999999998875432211000 00000000111000000
Q ss_pred C-----CC-CCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEeccc-ccccccC
Q 007268 233 K-----FD-VESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARSE-EVLSGEM 299 (610)
Q Consensus 233 ~-----~~-~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~~-~va~~~~ 299 (610)
+ .+ .....+.+..+.+.+. .+.+=++|+|+++... ..+.+...+-.-..++.+|++|.+. .+.....
T Consensus 79 D~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 79 DVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred CEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 0 00 0011123333343332 2455689999987542 3334443333334466666666553 3433344
Q ss_pred CccceecCCCCCHHHHHHHHHHH
Q 007268 300 ESRKNFPVGFLKEEEAWSLFKKM 322 (610)
Q Consensus 300 ~~~~~~~l~~L~~~ea~~Lf~~~ 322 (610)
+....+++.+++.++..+.+...
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHHc
Confidence 55678999999999998888753
No 124
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0048 Score=62.21 Aligned_cols=203 Identities=19% Similarity=0.291 Sum_probs=121.4
Q ss_pred cCCCCCcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeC
Q 007268 148 IPNKDYEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVS 214 (610)
Q Consensus 148 ~~~~~~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs 214 (610)
.|...+..+-|-++.+++|.+... =..++=|.++|++|.|||-||++++++.... | +.+.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--F-----Irvv 217 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--F-----IRVV 217 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--E-----EEec
Confidence 344455667788888988888765 1356779999999999999999999986643 3 2222
Q ss_pred CCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc----------------chhhcCCCC-
Q 007268 215 ESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD----------------LLDVGIPHG- 277 (610)
Q Consensus 215 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~----------------~~~l~~~l~- 277 (610)
. .++.+.. +| .-...+..+.+.-+...+++|.+|.++.... .-.+...+.
T Consensus 218 g----SElVqKY---iG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 218 G----SELVQKY---IG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred c----HHHHHHH---hc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 1 1222221 12 1123455566666667899999999874310 111222221
Q ss_pred -CCCCCeEEEEEecccccc-cccC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch----H
Q 007268 278 -DDHKGCKVLFTARSEEVL-SGEM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP----V 348 (610)
Q Consensus 278 -~~~~gs~IivTTR~~~va-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP----L 348 (610)
+.....|||..|...... +... .-.+.++++.-+.+.-.++|+-+.......++. -.+.|++.|.|.- .
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dv--d~e~la~~~~g~sGAdlk 362 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDV--DLELLARLTEGFSGADLK 362 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCc--CHHHHHHhcCCCchHHHH
Confidence 123467999988877664 1122 224578888667777778888777533322211 1335667777664 4
Q ss_pred HHHHHHHHHh---cC---CHHHHHHHHHHh
Q 007268 349 SIVTVARALR---NK---GIREWKDALEQL 372 (610)
Q Consensus 349 ai~~i~~~L~---~~---~~~~w~~~l~~l 372 (610)
||.+=|++++ .+ +.+.+.+..+..
T Consensus 363 aictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 363 AICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 5556666665 22 555666555554
No 125
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.0041 Score=63.47 Aligned_cols=175 Identities=10% Similarity=0.073 Sum_probs=97.2
Q ss_pred HHHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCC-----CC
Q 007268 162 ILNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLK-----FD 235 (610)
Q Consensus 162 ~~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~~ 235 (610)
..+.|...+..++ ...+.++|+.|+||+++|..++...--.+.-+. ....-...+.+...-..+ +.
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~--------~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE--------ACGFCHSCELMQSGNHPDLHVIKPE 82 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC--------CCCCCHHHHHHHcCCCCCEEEEecC
Confidence 3456666665554 467889999999999999999876543211000 000000111111110000 00
Q ss_pred ---CCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEecc-cccccccCCcccee
Q 007268 236 ---VESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARS-EEVLSGEMESRKNF 305 (610)
Q Consensus 236 ---~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~va~~~~~~~~~~ 305 (610)
..-..+.+..+.+.+. .++.=++|+|+++.. ...+.+...+-.-..++.+|++|.+ ..+.+...+....+
T Consensus 83 ~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~ 162 (319)
T PRK06090 83 KEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162 (319)
T ss_pred cCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeE
Confidence 0011223333433332 245568899999754 3344443333333345555555554 45554455666789
Q ss_pred cCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 306 PVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 306 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
.+.+++.+++.+.+.... .. ....+++.++|.|+....+
T Consensus 163 ~~~~~~~~~~~~~L~~~~---~~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 163 VVTPPSTAQAMQWLKGQG---IT------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eCCCCCHHHHHHHHHHcC---Cc------hHHHHHHHcCCCHHHHHHH
Confidence 999999999999887641 11 1346789999999866544
No 126
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.0024 Score=70.12 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=93.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCe
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEER 255 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr 255 (610)
..+.|+|..|+|||.|++.+++.......-..++|++. .++..++...+.. .....+.+.+. +.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~--------~~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRD--------GKGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHh--------ccHHHHHHHhh--cC
Confidence 45899999999999999999998764322234566653 3344444433321 11223334443 34
Q ss_pred EEEEEeCCCCc---ccchh-hcCCCCC-CCCCeEEEEEecccccc--------cccCCccceecCCCCCHHHHHHHHHHH
Q 007268 256 ILVILDNIWEN---LDLLD-VGIPHGD-DHKGCKVLFTARSEEVL--------SGEMESRKNFPVGFLKEEEAWSLFKKM 322 (610)
Q Consensus 256 ~LLVLDdv~~~---~~~~~-l~~~l~~-~~~gs~IivTTR~~~va--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (610)
=+|||||+... ..|.. +...+.. ...|..|||||+...-. ..-....-++.|.+.+.+.-..++.+.
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 58999999754 22221 1111111 12245688888764211 111234567999999999999999998
Q ss_pred hCCCCCCchHHHHHHHHHHHcCCchHHHH
Q 007268 323 AGDYVEGSELEEVARNVVEECAGLPVSIV 351 (610)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 351 (610)
+....-. --++++.-|++.+.+..-.+.
T Consensus 459 a~~r~l~-l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 459 AVQEQLN-APPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHhcCCC-CCHHHHHHHHHhccCCHHHHH
Confidence 8532211 123667777777776644433
No 127
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.60 E-value=0.0053 Score=59.22 Aligned_cols=181 Identities=16% Similarity=0.127 Sum_probs=105.7
Q ss_pred CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHH----HHHH
Q 007268 172 NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRA----RILY 247 (610)
Q Consensus 172 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~----~~l~ 247 (610)
..+.+++.++|.-|+|||.+.+......... ....-+.-.+..+...+...++..+..++. ......+ ..+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d---~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~-~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED---QVAVVVIDKPTLSDATLLEAIVADLESQPK-VNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC---ceEEEEecCcchhHHHHHHHHHHHhccCcc-chhHHHHHHHHHHHH
Confidence 4556799999999999999999555444322 122222233456777888888888877332 2222222 2333
Q ss_pred HHHhCCCe-EEEEEeCCCCc--ccchhhcC--CCC-CCCCCeEEEEEeccccc-------ccccCCccce-ecCCCCCHH
Q 007268 248 DRLKKEER-ILVILDNIWEN--LDLLDVGI--PHG-DDHKGCKVLFTARSEEV-------LSGEMESRKN-FPVGFLKEE 313 (610)
Q Consensus 248 ~~L~~~kr-~LLVLDdv~~~--~~~~~l~~--~l~-~~~~gs~IivTTR~~~v-------a~~~~~~~~~-~~l~~L~~~ 313 (610)
....++++ ..+++|+.... ..++.+.. .+. +...--+|+..-..+-- .......... |.+.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 44445677 99999998754 23332211 111 11111223333222110 0111112233 999999999
Q ss_pred HHHHHHHHHhCCCCCCc--hHHHHHHHHHHHcCCchHHHHHHHHH
Q 007268 314 EAWSLFKKMAGDYVEGS--ELEEVARNVVEECAGLPVSIVTVARA 356 (610)
Q Consensus 314 ea~~Lf~~~~~~~~~~~--~~~~~~~~I~~~c~GlPLai~~i~~~ 356 (610)
+...++..++.....++ -..+....|.....|.|.+|..++..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999999885332222 22456778999999999999888654
No 128
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.56 E-value=0.0054 Score=63.89 Aligned_cols=199 Identities=15% Similarity=0.194 Sum_probs=122.7
Q ss_pred cHHHHHHHHHHhcCCCceEEEEEecCCchHHHHH-HHHHHHhccCCCCCeEEEEEeCCC---CChHHHHHHHHHhhCCCC
Q 007268 159 RASILNEIMDALKNPNVNMLLIYGMGGIGKTTLA-KKVARKAESDKLFDQVVLSEVSES---RDVRKIQGEIADKLGLKF 234 (610)
Q Consensus 159 R~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~f~~~~wv~vs~~---~~~~~~~~~i~~~l~~~~ 234 (610)
|.+.+++|..||.+..-..|.|.||-|+||+.|+ .++..+.+ .+..+++.+- .+-..++..++.++|.-+
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999888889999999999999999 77766533 3677766542 234455566666655321
Q ss_pred -----------------------CC--CChhHHHHHHHH----HHh-------------------------CCCeEEEEE
Q 007268 235 -----------------------DV--ESESGRARILYD----RLK-------------------------KEERILVIL 260 (610)
Q Consensus 235 -----------------------~~--~~~~~~~~~l~~----~L~-------------------------~~kr~LLVL 260 (610)
.+ .+.+..+..+.+ .|+ ..++-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 00 111111111111 110 023679999
Q ss_pred eCCCCccc-----chhh---cCCCCCCCCCeEEEEEeccccccc---ccC--CccceecCCCCCHHHHHHHHHHHhCCCC
Q 007268 261 DNIWENLD-----LLDV---GIPHGDDHKGCKVLFTARSEEVLS---GEM--ESRKNFPVGFLKEEEAWSLFKKMAGDYV 327 (610)
Q Consensus 261 Ddv~~~~~-----~~~l---~~~l~~~~~gs~IivTTR~~~va~---~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 327 (610)
||...... |+.+ ...+. ..+-.+||++|-+..... ... ...+.+.|...+.+.|.++...++....
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~ 233 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDT 233 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccc
Confidence 99854311 1221 11111 123346888887765431 112 3346899999999999999999986331
Q ss_pred CC-------------------chHHHHHHHHHHHcCCchHHHHHHHHHHhcC-CHHH
Q 007268 328 EG-------------------SELEEVARNVVEECAGLPVSIVTVARALRNK-GIRE 364 (610)
Q Consensus 328 ~~-------------------~~~~~~~~~I~~~c~GlPLai~~i~~~L~~~-~~~~ 364 (610)
.. ..........+..+||=-.-+..+++.++.. ++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~ 290 (431)
T PF10443_consen 234 EDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE 290 (431)
T ss_pred cccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH
Confidence 10 1233455678888999988999998888843 5443
No 129
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.54 E-value=0.00072 Score=73.11 Aligned_cols=175 Identities=16% Similarity=0.119 Sum_probs=93.9
Q ss_pred CcCccccHHHHHHHHHHhc----------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHH
Q 007268 153 YEAFESRASILNEIMDALK----------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKI 222 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~ 222 (610)
...+.|.+..++.+.+... -..++-|.++|++|+|||.+|+.+++..... | +-++.+.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH-------
Confidence 3456677666655543211 1345678999999999999999999986532 2 2222211
Q ss_pred HHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc--------------chhhcCCCCCCCCCeEEEEE
Q 007268 223 QGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD--------------LLDVGIPHGDDHKGCKVLFT 288 (610)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~--------------~~~l~~~l~~~~~gs~IivT 288 (610)
+.. ...+. ....+..+.+......+++|++|+++.... ...+...+.....+.-||.|
T Consensus 295 ---l~~----~~vGe-se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 ---LFG----GIVGE-SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred ---hcc----cccCh-HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 110 00011 122334444444445789999999974210 00111111112334456667
Q ss_pred eccccccccc----CCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 289 ARSEEVLSGE----MESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 289 TR~~~va~~~----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
|......... ..-...+.++.-+.++-.++|..++...............+++.+.|.-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 7655432111 1224578888889999999999887543221100122346666766653
No 130
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00084 Score=73.22 Aligned_cols=156 Identities=22% Similarity=0.294 Sum_probs=92.8
Q ss_pred cCccccHHHHHHHHHHhc------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHH
Q 007268 154 EAFESRASILNEIMDALK------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
.+.+|-++..++|++.|. .-+.++++++|++|+|||+|++.+++....+ | +-++++.-.+..++--.=-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhccccc
Confidence 456799999999999886 3345799999999999999999999988754 3 3445555444443321111
Q ss_pred HhhCCCCCCCChhHHHHHHHHHHh--CCCeEEEEEeCCCCcc-c--------chhhcCC-----CCCC----C-CCeEE-
Q 007268 228 DKLGLKFDVESESGRARILYDRLK--KEERILVILDNIWENL-D--------LLDVGIP-----HGDD----H-KGCKV- 285 (610)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~--~~kr~LLVLDdv~~~~-~--------~~~l~~~-----l~~~----~-~gs~I- 285 (610)
..+| .... ++.+.+. ..++-|++||.++... + +-.+..| |.+. . .=|.|
T Consensus 398 TYIG------amPG---rIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 398 TYIG------AMPG---KIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccc------cCCh---HHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 1111 1111 2233332 2467899999987431 0 1111111 1000 0 01233
Q ss_pred EEEe-cccc-cccccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 286 LFTA-RSEE-VLSGEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 286 ivTT-R~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
.||| .+-. +.........+|++.+.+++|=.++-++++
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3344 3333 333345667899999999999999888876
No 131
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.51 E-value=0.0049 Score=70.80 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=90.4
Q ss_pred cCccccHHHHHHHHHHhc------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHH
Q 007268 154 EAFESRASILNEIMDALK------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
...+|-++.+++|+++|. .....++.++|++|+||||+|+.++...... | +-++++...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--Y---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E---EEEEcCCCCCHHHhccchh
Confidence 457899999999998876 2345689999999999999999999876532 2 2233444333332221111
Q ss_pred HhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc------chhhcCCCC---------------CCCCCeEEE
Q 007268 228 DKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD------LLDVGIPHG---------------DDHKGCKVL 286 (610)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~------~~~l~~~l~---------------~~~~gs~Ii 286 (610)
...+. ........+.. .. ...-+++||.++.... ...+...+. -.-.+.-+|
T Consensus 397 ~~~g~-----~~G~~~~~l~~-~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIGS-----MPGKLIQKMAK-VG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCCC-----CCcHHHHHHHh-cC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 11111 11111222221 11 1345788999864321 111111111 111344455
Q ss_pred EEecccccccccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 287 FTARSEEVLSGEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 287 vTTR~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
.|+....+.....+...++.+.+++.++-.++..+++
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 6665554443344556789999999999998888776
No 132
>PRK08181 transposase; Validated
Probab=97.49 E-value=0.0013 Score=65.46 Aligned_cols=78 Identities=19% Similarity=0.170 Sum_probs=48.7
Q ss_pred HHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHH
Q 007268 168 DALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILY 247 (610)
Q Consensus 168 ~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 247 (610)
+|+. ....+.|+|++|+|||.||..+.+....+ ...++|+++ .+++..+..... . .......
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~----~----~~~~~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR----E----LQLESAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh----C----CcHHHHH
Confidence 5654 33569999999999999999999876543 234555543 445555533211 0 1122344
Q ss_pred HHHhCCCeEEEEEeCCCC
Q 007268 248 DRLKKEERILVILDNIWE 265 (610)
Q Consensus 248 ~~L~~~kr~LLVLDdv~~ 265 (610)
+.+. +.=||||||+..
T Consensus 163 ~~l~--~~dLLIIDDlg~ 178 (269)
T PRK08181 163 AKLD--KFDLLILDDLAY 178 (269)
T ss_pred HHHh--cCCEEEEecccc
Confidence 4443 456999999953
No 133
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0037 Score=64.52 Aligned_cols=176 Identities=10% Similarity=0.032 Sum_probs=97.9
Q ss_pred HHHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCC-----CC
Q 007268 162 ILNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLK-----FD 235 (610)
Q Consensus 162 ~~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~~ 235 (610)
.-++|...+.+++ ...+.++|+.|+||+++|..++...--.+..+.. .++ .-...+.+...-..+ +.
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg----~C~sC~~~~~g~HPD~~~i~p~ 82 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK---SCG----HCRGCQLMQAGTHPDYYTLTPE 82 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCC----CCHHHHHHHcCCCCCEEEEecc
Confidence 4566777776544 4678899999999999999998876332111000 000 000111111000000 00
Q ss_pred ---CCChhHHHHHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEecc-cccccccCCcccee
Q 007268 236 ---VESESGRARILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARS-EEVLSGEMESRKNF 305 (610)
Q Consensus 236 ---~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~-~~va~~~~~~~~~~ 305 (610)
..-..+.++.+.+.+. .+++=++|+|+++... .-+.+...+-.-..++.+|++|.+ ..+.....+....+
T Consensus 83 ~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~ 162 (334)
T PRK07993 83 KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLH 162 (334)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccc
Confidence 0011233444444443 2566799999997542 333333333333345556666655 44544344556789
Q ss_pred cCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHH
Q 007268 306 PVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSI 350 (610)
Q Consensus 306 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (610)
.+.+++.+++.+.+....+ .+ .+.+..++..++|.|...
T Consensus 163 ~~~~~~~~~~~~~L~~~~~---~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 163 YLAPPPEQYALTWLSREVT---MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred cCCCCCHHHHHHHHHHccC---CC---HHHHHHHHHHcCCCHHHH
Confidence 9999999999988876432 11 233667899999999644
No 134
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.0011 Score=71.19 Aligned_cols=190 Identities=15% Similarity=0.177 Sum_probs=116.3
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
....+++|-+.....|...+..++. .-....|+-|+||||+|+.++...--.+. ....+++.-...+.|...
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEG 85 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcC
Confidence 3456789999999999998876543 55678999999999999999887543311 111122222222333222
Q ss_pred hCCC-----CCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeE-EEEEecccccccc
Q 007268 230 LGLK-----FDVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCK-VLFTARSEEVLSG 297 (610)
Q Consensus 230 l~~~-----~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~-IivTTR~~~va~~ 297 (610)
-..+ .......+.++.+.+... .++.=+.|+|.|+-. ..|..+...+-.--.... |+.||-...+...
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 0010 011122234555555553 245568999999744 567766555543334444 4456666666655
Q ss_pred cCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchH
Q 007268 298 EMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPV 348 (610)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 348 (610)
..+....|.++.++.++-...+...+....-.-+ .+...-|++..+|..-
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCChh
Confidence 5677789999999999999999988853322211 2455667777777544
No 135
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0046 Score=67.46 Aligned_cols=157 Identities=22% Similarity=0.269 Sum_probs=93.4
Q ss_pred CcCccccHHHHHHHHHHhc------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHH
Q 007268 153 YEAFESRASILNEIMDALK------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEI 226 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 226 (610)
..+.+|-++..++|++++. +-+.++++.+|++|+|||++|+.++.....+ | +-++++.-.+..++--.=
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccc
Confidence 3567899999999999885 4467899999999999999999999987654 3 345666655555432211
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHhC--CCeEEEEEeCCCCcc---------cchhhcCC-----CCC-----CCCCeEE
Q 007268 227 ADKLGLKFDVESESGRARILYDRLKK--EERILVILDNIWENL---------DLLDVGIP-----HGD-----DHKGCKV 285 (610)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~~--~kr~LLVLDdv~~~~---------~~~~l~~~-----l~~-----~~~gs~I 285 (610)
-..+| ... .++.+.|++ -.+-|+.||.|+... .+-.+..| |.+ --.=|+|
T Consensus 485 RTYVG------AMP---GkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 485 RTYVG------AMP---GKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred eeeec------cCC---hHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 11111 111 234444432 345788899887431 11111111 000 0012455
Q ss_pred EEE-eccc--ccccccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 286 LFT-ARSE--EVLSGEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 286 ivT-TR~~--~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
++. |-+. .+.......-..|++.+...+|-.++-.+++
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 543 3221 1222234455789999999999888877765
No 136
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.42 E-value=0.0034 Score=62.74 Aligned_cols=56 Identities=29% Similarity=0.342 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHH
Q 007268 161 SILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQ 223 (610)
Q Consensus 161 ~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 223 (610)
+.++++..++..+ +-|.|.|++|+|||+||+.+++... ...+++++....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 3455566666543 3567999999999999999987542 134556666555544443
No 137
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.41 E-value=0.00086 Score=61.74 Aligned_cols=137 Identities=16% Similarity=0.166 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCC------------------CeEEEEEeCCC--
Q 007268 158 SRASILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLF------------------DQVVLSEVSES-- 216 (610)
Q Consensus 158 GR~~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f------------------~~~~wv~vs~~-- 216 (610)
|-++..+.|.+.+..++. ..+.++|+.|+||+++|..+++..-..... ....|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 556777888888876665 568999999999999999998876443222 22333333222
Q ss_pred -CChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEecccc
Q 007268 217 -RDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARSEE 293 (610)
Q Consensus 217 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~ 293 (610)
....++ +++...+..... .++.=++|+|+++.. .....+...+-.-..++.+|++|.+..
T Consensus 81 ~i~i~~i-r~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQI-REIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHH-HHHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHH-HHHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 222222 233333322211 135678999999865 344444433333445788888887765
Q ss_pred -cccccCCccceecCCCCC
Q 007268 294 -VLSGEMESRKNFPVGFLK 311 (610)
Q Consensus 294 -va~~~~~~~~~~~l~~L~ 311 (610)
+.....+....+.+.+|+
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 333233444566666653
No 138
>PRK10536 hypothetical protein; Provisional
Probab=97.40 E-value=0.0017 Score=63.42 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=42.0
Q ss_pred CCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEE
Q 007268 152 DYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVL 210 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~w 210 (610)
+...+.+|......++.++.+. .+|.+.|++|+|||+||..++.+.-..+.|+.++.
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 3455677888888888888764 49999999999999999999886432233554443
No 139
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.37 E-value=0.0018 Score=69.44 Aligned_cols=152 Identities=12% Similarity=0.117 Sum_probs=86.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCe
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEER 255 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr 255 (610)
.-+.|+|+.|+|||+|++.+++..... ...+++++. ..+...+...+... ........+. ..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~--------~~~~f~~~~~--~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG--------EMQRFRQFYR--NV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc--------hHHHHHHHcc--cC
Confidence 568899999999999999999987643 234556543 33444554444311 1222333332 35
Q ss_pred EEEEEeCCCCccc--c--hhhcCCCCC-CCCCeEEEEEeccccc-c-------cccCCccceecCCCCCHHHHHHHHHHH
Q 007268 256 ILVILDNIWENLD--L--LDVGIPHGD-DHKGCKVLFTARSEEV-L-------SGEMESRKNFPVGFLKEEEAWSLFKKM 322 (610)
Q Consensus 256 ~LLVLDdv~~~~~--~--~~l~~~l~~-~~~gs~IivTTR~~~v-a-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (610)
-+|++||+..... + +.+...+.. ...|..||+||....- . ..-......+.+.+++.++-..++.+.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 6899999865421 1 112111110 0124568888855321 1 111223468899999999999999988
Q ss_pred hCCCCCCchHHHHHHHHHHHcCCc
Q 007268 323 AGDYVEGSELEEVARNVVEECAGL 346 (610)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~Gl 346 (610)
+..... .-.+++..-|+..+.|.
T Consensus 284 ~~~~~~-~l~~evl~~la~~~~~d 306 (445)
T PRK12422 284 AEALSI-RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCC
Confidence 753211 11135555666666644
No 140
>PRK08116 hypothetical protein; Validated
Probab=97.35 E-value=0.00075 Score=67.55 Aligned_cols=102 Identities=21% Similarity=0.177 Sum_probs=59.4
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCe
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEER 255 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr 255 (610)
.-+.|+|.+|+|||.||..+++....+ ...+++++ ..+++..+........ ......+.+.+.+ -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~--~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVN--A 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhcC--C
Confidence 458899999999999999999998654 34456665 3445555554433211 1112334455543 2
Q ss_pred EEEEEeCCC--Ccccchh--hcCCCCC-CCCCeEEEEEeccc
Q 007268 256 ILVILDNIW--ENLDLLD--VGIPHGD-DHKGCKVLFTARSE 292 (610)
Q Consensus 256 ~LLVLDdv~--~~~~~~~--l~~~l~~-~~~gs~IivTTR~~ 292 (610)
=||||||+. ....|.. +...+.. -..+..+|+||...
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 389999994 3334432 1111110 12345689998654
No 141
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0032 Score=70.12 Aligned_cols=176 Identities=21% Similarity=0.215 Sum_probs=108.1
Q ss_pred cCccccHH---HHHHHHHHhcCC---------CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHH
Q 007268 154 EAFESRAS---ILNEIMDALKNP---------NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRK 221 (610)
Q Consensus 154 ~~~vGR~~---~~~~L~~~L~~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (610)
.++.|-++ |+.++++.|.++ -++=+.|+|++|+|||-||+.++-...+- |++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH-----
Confidence 45566554 556667777643 25668899999999999999999877653 3444332
Q ss_pred HHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc-----------------chhhcCCCCCC--CCC
Q 007268 222 IQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD-----------------LLDVGIPHGDD--HKG 282 (610)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~-----------------~~~l~~~l~~~--~~g 282 (610)
+.++.+.. .....+..+....+...++++.+|+++.... ++++...+... ..+
T Consensus 379 ---EFvE~~~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ---EFVEMFVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ---HHHHHhcc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 11111111 0134556666666667889999998864311 22222222111 123
Q ss_pred eEEEEEeccccccccc-C---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHH
Q 007268 283 CKVLFTARSEEVLSGE-M---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSI 350 (610)
Q Consensus 283 s~IivTTR~~~va~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (610)
.-+|-+|+...+.+.. . .-.+.+.++.-+...-.++|.-++.......+..++.+ |+...-|.+=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 3344566666654211 1 23467888888889999999999865444445556676 888888888654
No 142
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.34 E-value=0.0016 Score=75.53 Aligned_cols=106 Identities=19% Similarity=0.313 Sum_probs=60.5
Q ss_pred cCccccHHHHHHHHHHhc-------CC--CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHH
Q 007268 154 EAFESRASILNEIMDALK-------NP--NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQG 224 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~-------~~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (610)
..++|.+..++.+.+.+. .+ ...++.++|++|+|||.||+.++...-.. ....+-++++..... .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhh----h
Confidence 467899988888877764 11 23578999999999999999998876432 222333333322111 1
Q ss_pred HHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc
Q 007268 225 EIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN 266 (610)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~ 266 (610)
.+..-+|.++..... +.-..+.+.+.+....+|+||+++..
T Consensus 640 ~~~~l~g~~~gyvg~-~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPPGYVGY-GEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCCCcccc-cccchHHHHHHhCCCcEEEEechhhc
Confidence 111222322211111 11122445555455679999999744
No 143
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.32 E-value=0.002 Score=66.39 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=67.9
Q ss_pred HHHHHHHhcC-CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCe-EEEEEeCCC-CChHHHHHHHHHhhCCCCCCCCh
Q 007268 163 LNEIMDALKN-PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQ-VVLSEVSES-RDVRKIQGEIADKLGLKFDVESE 239 (610)
Q Consensus 163 ~~~L~~~L~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~ 239 (610)
..++++.+.. +....+.|+|.+|+|||||++.+++..... +.+. ++|+.+.+. ..+.++.+.+...+.....+.+.
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3457777662 344577999999999999999999887654 2343 467666654 46788888888877654422222
Q ss_pred hH------HHHHHHHHH-hCCCeEEEEEeCCCC
Q 007268 240 SG------RARILYDRL-KKEERILVILDNIWE 265 (610)
Q Consensus 240 ~~------~~~~l~~~L-~~~kr~LLVLDdv~~ 265 (610)
.. .+..+.+++ .++++.+||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 21 122333333 358999999999853
No 144
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.28 E-value=0.0022 Score=61.56 Aligned_cols=172 Identities=20% Similarity=0.329 Sum_probs=101.1
Q ss_pred CcCccccHHHHHH---HHHHhcCC------CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHH
Q 007268 153 YEAFESRASILNE---IMDALKNP------NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQ 223 (610)
Q Consensus 153 ~~~~vGR~~~~~~---L~~~L~~~------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 223 (610)
..+++|.++...+ |++.|.++ .++.|..+|++|.|||.+|+.+++...+- | +.+. ..++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vk----at~l- 187 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVK----ATEL- 187 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEec----hHHH-
Confidence 3567888776554 56677643 47899999999999999999999987653 2 1111 1111
Q ss_pred HHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--------------cchhhcCCCC--CCCCCeEEEE
Q 007268 224 GEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--------------DLLDVGIPHG--DDHKGCKVLF 287 (610)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--------------~~~~l~~~l~--~~~~gs~Iiv 287 (610)
|-+..| +....+..+.++-.+--+|++.+|.++... ..+.+...+. ..+.|...|.
T Consensus 188 --iGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 188 --IGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred --HHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 112221 223456667777666689999999886431 1122222221 1344665666
Q ss_pred EecccccccccCCc--cceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCc
Q 007268 288 TARSEEVLSGEMES--RKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGL 346 (610)
Q Consensus 288 TTR~~~va~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 346 (610)
.|.+.........+ ...|+..--+++|-.+++..++.....+-+ ...+.++.+.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCC
Confidence 66666554222222 235666777889999999988843222111 1144566666664
No 145
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.25 E-value=0.0043 Score=64.85 Aligned_cols=180 Identities=18% Similarity=0.171 Sum_probs=99.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEE 254 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~k 254 (610)
...+.|+|..|.|||.|++.+.+.......-..+++++ .+.....++..+.. +.....++.. +
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~--------~~~~~Fk~~y-~-- 175 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD--------NEMEKFKEKY-S-- 175 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh--------hhHHHHHHhh-c--
Confidence 67899999999999999999999987652223455543 23344444433321 2233444443 2
Q ss_pred eEEEEEeCCCCcc---cchh-h---cCCCCCCCCCeEEEEEecccccc-c-------ccCCccceecCCCCCHHHHHHHH
Q 007268 255 RILVILDNIWENL---DLLD-V---GIPHGDDHKGCKVLFTARSEEVL-S-------GEMESRKNFPVGFLKEEEAWSLF 319 (610)
Q Consensus 255 r~LLVLDdv~~~~---~~~~-l---~~~l~~~~~gs~IivTTR~~~va-~-------~~~~~~~~~~l~~L~~~ea~~Lf 319 (610)
-=++++||++-.. .|+. + ...+.. .|-.||+|++...-. . .-....-++.+.+.+.+....++
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 2388999997532 2221 1 222222 233799998765422 1 11233468999999999999999
Q ss_pred HHHhCCCCCCchHHHHHHHHHHHcCC----chHHHHHHHHHHh--cC--CHHHHHHHHHHhcC
Q 007268 320 KKMAGDYVEGSELEEVARNVVEECAG----LPVSIVTVARALR--NK--GIREWKDALEQLRR 374 (610)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~I~~~c~G----lPLai~~i~~~L~--~~--~~~~w~~~l~~l~~ 374 (610)
.+.+......-. .++..-|++.... +.-|+..+..+-. ++ +...-..++..+..
T Consensus 254 ~kka~~~~~~i~-~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 254 RKKAEDRGIEIP-DEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLR 315 (408)
T ss_pred HHHHHhcCCCCC-HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhc
Confidence 997742211110 1333344444333 3344444333332 11 55555666665433
No 146
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.044 Score=57.24 Aligned_cols=153 Identities=17% Similarity=0.175 Sum_probs=83.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCe
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEER 255 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr 255 (610)
|=-.++||+|.|||+++.++++... |+..- +..+...+-.+ ++.++.. ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~n~d-Lr~LL~~----------------------t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKLDSD-LRHLLLA----------------------TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccCcHH-HHHHHHh----------------------CCCC
Confidence 4568999999999999999999876 54322 22222222222 2333222 2356
Q ss_pred EEEEEeCCCCcccc-----------h---------hhcCCC--CCCCC-CeEE-EEEecccccc-cccCC---ccceecC
Q 007268 256 ILVILDNIWENLDL-----------L---------DVGIPH--GDDHK-GCKV-LFTARSEEVL-SGEME---SRKNFPV 307 (610)
Q Consensus 256 ~LLVLDdv~~~~~~-----------~---------~l~~~l--~~~~~-gs~I-ivTTR~~~va-~~~~~---~~~~~~l 307 (610)
-+||+.|++..-+. . -+...+ .+..+ +=|| |.||...+-. +..+. -...+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 77888887643110 0 011111 01122 2255 4577665543 11222 2347889
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHH-HhcC
Q 007268 308 GFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARA-LRNK 360 (610)
Q Consensus 308 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~-L~~~ 360 (610)
.--+.+....|+.++++...++ .++.+|.+...|.-+.=..++.. |.++
T Consensus 368 gyCtf~~fK~La~nYL~~~~~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEEDH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCCc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 9999999999999998754322 34445555555554444444444 4444
No 147
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.25 E-value=0.0032 Score=72.51 Aligned_cols=173 Identities=16% Similarity=0.216 Sum_probs=97.2
Q ss_pred CcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh
Q 007268 153 YEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV 219 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~ 219 (610)
...+.|.+...+.|.+.+. -..++-+.++|++|+|||++|+.+++..... | +.+..+
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f---i~v~~~----- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F---IAVRGP----- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEehH-----
Confidence 3456677777766665543 1234568899999999999999999986532 2 222211
Q ss_pred HHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc---------c-----chhhcCCCCC--CCCCe
Q 007268 220 RKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL---------D-----LLDVGIPHGD--DHKGC 283 (610)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~---------~-----~~~l~~~l~~--~~~gs 283 (610)
++ +.. ..+ .....+..+........+++|+||+++... . ...+...+.. ...+.
T Consensus 522 -~l----~~~----~vG-ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 -EI----LSK----WVG-ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred -HH----hhc----ccC-cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11 111 011 112344555555555678999999986421 0 1112111111 12345
Q ss_pred EEEEEeccccccc-ccC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 284 KVLFTARSEEVLS-GEM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 284 ~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
-||.||....... ... .-...+.++..+.++-.++|..+.......+. .....+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~--~~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED--VDLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc--CCHHHHHHHcCCCC
Confidence 5666776554331 111 23457889999999999999877653322221 11345777777654
No 148
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.014 Score=62.99 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=51.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKE 253 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~ 253 (610)
..+++|+|++|+||||++..++.....++....+..++.... ....+.+......++...........+....+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--
Confidence 479999999999999999998877654322334555655322 12233344444555554333333333444444443
Q ss_pred CeEEEEEeCCC
Q 007268 254 ERILVILDNIW 264 (610)
Q Consensus 254 kr~LLVLDdv~ 264 (610)
..-+|++|..-
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 34588888774
No 149
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.013 Score=60.43 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=63.1
Q ss_pred HHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEe-cccccccccCCccceecCCCCCHH
Q 007268 241 GRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTA-RSEEVLSGEMESRKNFPVGFLKEE 313 (610)
Q Consensus 241 ~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~va~~~~~~~~~~~l~~L~~~ 313 (610)
+.+..+.+.+. .+++-++|+|+++.. ...+.+...+-.-.+++.+|++| +...+.....+....+.+.+++.+
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~ 194 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPE 194 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHH
Confidence 34444555443 245568889999755 34444444443334455555554 445554444455678999999999
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 314 EAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 314 ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
+..+.+... + .. + ...++..++|.|+....+
T Consensus 195 ~~~~~L~~~-~--~~-~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 195 AAAAWLAAQ-G--VA-D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred HHHHHHHHc-C--CC-h-----HHHHHHHcCCCHHHHHHH
Confidence 999998875 1 11 1 123577899999755433
No 150
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.23 E-value=0.0026 Score=73.06 Aligned_cols=103 Identities=20% Similarity=0.325 Sum_probs=60.1
Q ss_pred cCccccHHHHHHHHHHhcC-------C--CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHH
Q 007268 154 EAFESRASILNEIMDALKN-------P--NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQG 224 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~-------~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (610)
..++|.+..++.+.+.+.. + ...++.++|++|+|||+||+.++.... ...+.++.+......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----
Confidence 3467878778877776651 1 234688999999999999999998763 234555555432211
Q ss_pred HHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc
Q 007268 225 EIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN 266 (610)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~ 266 (610)
.+...++.+..... .+....+.+.+......+|+||+++..
T Consensus 525 ~~~~lig~~~gyvg-~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 525 TVSRLIGAPPGYVG-FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred cHHHHhcCCCCCcc-cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 11122222211111 111223445554444569999999754
No 151
>PRK08118 topology modulation protein; Reviewed
Probab=97.23 E-value=0.0002 Score=66.28 Aligned_cols=35 Identities=29% Similarity=0.549 Sum_probs=28.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccC-CCCCeEEE
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESD-KLFDQVVL 210 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~f~~~~w 210 (610)
+.|.|+|++|+||||||+.+++..... .+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987654 44677776
No 152
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.17 E-value=0.0019 Score=62.14 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=37.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQG 224 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (610)
...++.|+|++|+|||+++.+++...... ...++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH
Confidence 35799999999999999999998776543 46889999876 55554433
No 153
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.17 E-value=0.0029 Score=72.87 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=93.8
Q ss_pred CCcCccccHHHHHHHHHHhcC-------------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 152 DYEAFESRASILNEIMDALKN-------------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~-------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
...++.|.+..+++|.+.+.- ...+-+.|+|++|+|||+||+.+++..... .+.++.+.
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~-----~i~i~~~~--- 247 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY-----FISINGPE--- 247 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----EEEEecHH---
Confidence 345578999998888776531 234678899999999999999999876421 22232211
Q ss_pred hHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--------c-----chhhcCCCCC-CCCCeE
Q 007268 219 VRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--------D-----LLDVGIPHGD-DHKGCK 284 (610)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--------~-----~~~l~~~l~~-~~~gs~ 284 (610)
+... . . ......+..+.+......+.+|+||+++... . ...+...+.. ...+..
T Consensus 248 ---i~~~----~----~-g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 248 ---IMSK----Y----Y-GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred ---Hhcc----c----c-cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 1100 0 0 0112234444444444567899999986421 0 1112111111 112223
Q ss_pred EEE-Eecccccc-cccC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 285 VLF-TARSEEVL-SGEM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 285 Iiv-TTR~~~va-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
++| ||....-. .... .-...+.+...+.++-.+++..........++ .....+++.+.|..
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~ 381 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFV 381 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCC
Confidence 444 55433211 1111 12346778888999888888876543221111 22456777887764
No 154
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.16 E-value=0.006 Score=62.45 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=80.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-----ChHHHHHHHHHhhCCCCCCCChhHHHHHHH
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-----DVRKIQGEIADKLGLKFDVESESGRARILY 247 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 247 (610)
..+..+.|||++|+|||.+|+.+++..... | +-++.++-. ..+..++++... ..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~--~---i~vsa~eL~sk~vGEsEk~IR~~F~~----------------A~ 204 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE--P---IVMSAGELESENAGEPGKLIRQRYRE----------------AA 204 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC--e---EEEEHHHhhcCcCCcHHHHHHHHHHH----------------HH
Confidence 456889999999999999999999997653 2 333322211 112222222111 11
Q ss_pred HHH-hCCCeEEEEEeCCCCccc--------c------hhhc---CC-----C------CCCCCCeEEEEEecccccc-cc
Q 007268 248 DRL-KKEERILVILDNIWENLD--------L------LDVG---IP-----H------GDDHKGCKVLFTARSEEVL-SG 297 (610)
Q Consensus 248 ~~L-~~~kr~LLVLDdv~~~~~--------~------~~l~---~~-----l------~~~~~gs~IivTTR~~~va-~~ 297 (610)
+.. .++++++|++|+++.... . ..+. .. + .....+..||+||...... +.
T Consensus 205 ~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpA 284 (413)
T PLN00020 205 DIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAP 284 (413)
T ss_pred HHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHh
Confidence 111 136899999999873310 0 0111 00 1 1224456788888766543 11
Q ss_pred cCCc---cceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchH
Q 007268 298 EMES---RKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPV 348 (610)
Q Consensus 298 ~~~~---~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 348 (610)
.... ...| ..-+.++-.++++.+......+ .....+|+....|-|+
T Consensus 285 LlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 285 LIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred HcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC---HHHHHHHHHcCCCCCc
Confidence 1111 1223 3346677777777766543322 2345567777777664
No 155
>PHA00729 NTP-binding motif containing protein
Probab=97.12 E-value=0.0022 Score=61.58 Aligned_cols=36 Identities=42% Similarity=0.505 Sum_probs=29.0
Q ss_pred HHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 165 EIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 165 ~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+++.+...+...|.|+|.+|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555556667899999999999999999998753
No 156
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.12 E-value=0.0046 Score=63.83 Aligned_cols=140 Identities=15% Similarity=0.126 Sum_probs=82.2
Q ss_pred ccccHHHHHHHHHHhc-CCCce-EEEEEecCCchHHHHHHHHHHHhccCCC-------------------CCeEEEEEeC
Q 007268 156 FESRASILNEIMDALK-NPNVN-MLLIYGMGGIGKTTLAKKVARKAESDKL-------------------FDQVVLSEVS 214 (610)
Q Consensus 156 ~vGR~~~~~~L~~~L~-~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------f~~~~wv~vs 214 (610)
++|-+....++..+.. .++.+ .+.++|++|+||||+|..+++....... ...+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566677777777776 34344 4999999999999999999998764321 2334444444
Q ss_pred CCCC---hHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEe
Q 007268 215 ESRD---VRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTA 289 (610)
Q Consensus 215 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTT 289 (610)
.... ..+..+++......... .++.-++++|+++... .-..+...+......+.+|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 4433 23334444443332211 2467799999998653 2333333333334566788777
Q ss_pred ccc-ccccccCCccceecCCCCC
Q 007268 290 RSE-EVLSGEMESRKNFPVGFLK 311 (610)
Q Consensus 290 R~~-~va~~~~~~~~~~~l~~L~ 311 (610)
... .+.....+....+++.+.+
T Consensus 147 n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred CChhhccchhhhcceeeecCCch
Confidence 743 3333233445667777733
No 157
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0013 Score=73.60 Aligned_cols=158 Identities=13% Similarity=0.183 Sum_probs=94.2
Q ss_pred CcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCC----e-EEEEEeCCCCChHHHHHHHH
Q 007268 153 YEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFD----Q-VVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~----~-~~wv~vs~~~~~~~~~~~i~ 227 (610)
..+.+||++|+.++++.|....-.--.++|.+|+|||++|.-++.+....+-.. . ++-++++ .+.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g----------~Lv 238 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG----------SLV 238 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH----------HHh
Confidence 467899999999999999854434456789999999999999998876542221 1 1111111 000
Q ss_pred HhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--------cch--hhcCCCCCCCCCeEEEEEecccccc--
Q 007268 228 DKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--------DLL--DVGIPHGDDHKGCKVLFTARSEEVL-- 295 (610)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--------~~~--~l~~~l~~~~~gs~IivTTR~~~va-- 295 (610)
. |... ...-++.+..+.+.+.+.++.+|.+|.++..- ..+ .+..|....+.--.|-.||-++.--
T Consensus 239 A--Gaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~i 315 (786)
T COG0542 239 A--GAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYI 315 (786)
T ss_pred c--cccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHh
Confidence 0 1111 12234456666777765568999999986431 111 1222222222222355677554320
Q ss_pred ---cccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 296 ---SGEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 296 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
.........+.+...+.+++..+++...
T Consensus 316 EKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 316 EKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 1122345678899999999999987654
No 158
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.10 E-value=0.0013 Score=63.99 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=30.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEe
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEV 213 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~v 213 (610)
-.++|+|..|+|||+|+..+....... |.++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEec
Confidence 467899999999999999999887654 888877754
No 159
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.09 E-value=0.0023 Score=70.48 Aligned_cols=47 Identities=30% Similarity=0.504 Sum_probs=40.0
Q ss_pred CcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 153 YEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...++|.+..++.+...+..+...-+.|+|++|+|||++|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999888776666778999999999999999998754
No 160
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.09 E-value=0.0033 Score=61.75 Aligned_cols=90 Identities=21% Similarity=0.210 Sum_probs=56.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCC----CCeEEEEEeCCCCChHHHHHHHHHhhCCCCCC----------CC-
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKL----FDQVVLSEVSESRDVRKIQGEIADKLGLKFDV----------ES- 238 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------~~- 238 (610)
...++.|+|.+|+|||+|+.+++........ ...++|++....++...+ .++++..+..... .+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence 3579999999999999999999865432211 257999998887765443 3344444332110 11
Q ss_pred --hhHHHHHHHHHHhCC-CeEEEEEeCCC
Q 007268 239 --ESGRARILYDRLKKE-ERILVILDNIW 264 (610)
Q Consensus 239 --~~~~~~~l~~~L~~~-kr~LLVLDdv~ 264 (610)
....+..+...+.+. +.-|||+|.+.
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 112234444455544 67788999874
No 161
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.09 E-value=0.0031 Score=59.97 Aligned_cols=87 Identities=23% Similarity=0.284 Sum_probs=56.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCCCCC----CCChhHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGLKFD----VESESGRARILYDR 249 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~ 249 (610)
++++.++|+.|+||||.+..++.....+ -..+..++.... ....+-++..++.++.+.. ..+..+.+....+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4799999999999999999998887765 446677776533 3456677888888887632 12233344444444
Q ss_pred HhCCCeEEEEEeCC
Q 007268 250 LKKEERILVILDNI 263 (610)
Q Consensus 250 L~~~kr~LLVLDdv 263 (610)
+...+.=++++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 44333347777765
No 162
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.025 Score=63.69 Aligned_cols=105 Identities=19% Similarity=0.311 Sum_probs=63.8
Q ss_pred cCccccHHHHHHHHHHhc-------C--CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHH
Q 007268 154 EAFESRASILNEIMDALK-------N--PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQG 224 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~-------~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (610)
..++|.++.+..+.+.+. + ....+....|+.|+|||.||+.++...-.. -+..+-++.|.... -.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~E----kH 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYME----KH 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHHH----HH
Confidence 347788888888887775 1 234677889999999999999999876432 13455555443321 11
Q ss_pred HHHHhhCCCCCCCChhHHHHHHHHHHhCCCeE-EEEEeCCCCc
Q 007268 225 EIADKLGLKFDVESESGRARILYDRLKKEERI-LVILDNIWEN 266 (610)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~-LLVLDdv~~~ 266 (610)
.+.+-+|.++.--.-.+ -..+-+..++ ++| +|.||.+...
T Consensus 565 sVSrLIGaPPGYVGyee-GG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 565 SVSRLIGAPPGYVGYEE-GGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHhCCCCCCceecc-ccchhHhhhc-CCCeEEEechhhhc
Confidence 23333454433221111 2344455553 666 8888999754
No 163
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.016 Score=62.24 Aligned_cols=172 Identities=16% Similarity=0.203 Sum_probs=96.5
Q ss_pred CcCccccHHHHHHHHHHhc---C---------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChH
Q 007268 153 YEAFESRASILNEIMDALK---N---------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVR 220 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~---~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 220 (610)
...+-|-+..+.+|.+.+. . ..++=|.++|++|.|||.||+.+++...+- | +.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecch----
Confidence 4566788888888777654 1 245678999999999999999999988753 2 222221
Q ss_pred HHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc---cc----------hhhc---CCCC---CCCC
Q 007268 221 KIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL---DL----------LDVG---IPHG---DDHK 281 (610)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~---~~----------~~l~---~~l~---~~~~ 281 (610)
+|+.... ...+..+..+.+.-.+.-+|++++|+++-.. +| ..+. ..+. ..+.
T Consensus 258 ----eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 258 ----EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ----hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 1222211 1223456666666666789999999997431 11 1111 1111 1123
Q ss_pred CeEEEEE-eccccccc---ccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCc
Q 007268 282 GCKVLFT-ARSEEVLS---GEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGL 346 (610)
Q Consensus 282 gs~IivT-TR~~~va~---~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 346 (610)
+.-||-+ +|...+-. ....-.+.|.|.--++..-.+++...+.+-..+..+ ..++|++..-|.
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~--d~~qlA~lTPGf 395 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDF--DFKQLAKLTPGF 395 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc--CHHHHHhcCCCc
Confidence 3333333 44433321 112234567777777777777777766422222211 134566666655
No 164
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.05 E-value=0.0026 Score=64.82 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=55.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCC------CCCChhHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKF------DVESESGRARILY 247 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~ 247 (610)
..+++.|+|++|+||||||.+++...... -..++|++....++.. .++.++.+. ......+.+..+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45799999999999999999988776543 3567899887766553 355555532 1223333344443
Q ss_pred HHHhCCCeEEEEEeCCC
Q 007268 248 DRLKKEERILVILDNIW 264 (610)
Q Consensus 248 ~~L~~~kr~LLVLDdv~ 264 (610)
..+.++..-++|+|.+-
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 33444567799999985
No 165
>PRK04132 replication factor C small subunit; Provisional
Probab=97.01 E-value=0.015 Score=66.59 Aligned_cols=155 Identities=11% Similarity=0.037 Sum_probs=94.8
Q ss_pred cCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeC
Q 007268 183 MGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDN 262 (610)
Q Consensus 183 ~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDd 262 (610)
|.++||||+|..+++..-....-..++-+++++..+... .++++..+....+ +...+.-++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~--------------~~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINV-IREKVKEFARTKP--------------IGGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC--------------cCCCCCEEEEEEC
Confidence 789999999999999863322123567778887655543 3333332211000 0012457999999
Q ss_pred CCCcc--cchhhcCCCCCCCCCeEEEEEecccc-cccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 007268 263 IWENL--DLLDVGIPHGDDHKGCKVLFTARSEE-VLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNV 339 (610)
Q Consensus 263 v~~~~--~~~~l~~~l~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I 339 (610)
++... ....+...+-.-...+++|++|.+.. +.....+....+.+.+++.++....+...+....-. -..+....|
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~~e~L~~I 717 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAI 717 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHH
Confidence 98663 44444433333234566666665543 333334556789999999999998888776422111 113567899
Q ss_pred HHHcCCchHHHHHH
Q 007268 340 VEECAGLPVSIVTV 353 (610)
Q Consensus 340 ~~~c~GlPLai~~i 353 (610)
++.++|.+..+..+
T Consensus 718 a~~s~GDlR~AIn~ 731 (846)
T PRK04132 718 LYIAEGDMRRAINI 731 (846)
T ss_pred HHHcCCCHHHHHHH
Confidence 99999988544433
No 166
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0082 Score=58.88 Aligned_cols=171 Identities=23% Similarity=0.261 Sum_probs=91.5
Q ss_pred cCccccHHHHHHHHHHhc------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHH
Q 007268 154 EAFESRASILNEIMDALK------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRK 221 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (610)
.++-|-+...+.|.+... ...-+-|.++|++|.||+.||+.|+..... -|.++|...-+.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFSvSSSDLvS- 204 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSSDLVS- 204 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceEEeehHHHHH-
Confidence 344566666666655542 123577999999999999999999987652 233444332111
Q ss_pred HHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc---------cchhh-------cCCCCCCCCCeEE
Q 007268 222 IQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL---------DLLDV-------GIPHGDDHKGCKV 285 (610)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~---------~~~~l-------~~~l~~~~~gs~I 285 (610)
..+| ....++..+.+--++.|+-+|.+|.++... .-..| ..-......|.-|
T Consensus 205 ------KWmG------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 205 ------KWMG------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred ------HHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 1122 122345556666666799999999997431 11111 1222233445556
Q ss_pred EEEecccccccccCC--ccceecCCCCCHHHHH-HHHHHHhCCCCCCchHHHHHHHHHHHcCCc
Q 007268 286 LFTARSEEVLSGEME--SRKNFPVGFLKEEEAW-SLFKKMAGDYVEGSELEEVARNVVEECAGL 346 (610)
Q Consensus 286 ivTTR~~~va~~~~~--~~~~~~l~~L~~~ea~-~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 346 (610)
+-.|...-+...... -...|.+ ||.+..|. .+|.-++++... .-.+...+.+.++..|.
T Consensus 273 LgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~-~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPH-VLTEQDFKELARKTEGY 334 (439)
T ss_pred EecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCcc-ccchhhHHHHHhhcCCC
Confidence 666766655421111 1122333 44444444 456666654322 22234456677777764
No 167
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.98 E-value=0.0031 Score=64.24 Aligned_cols=84 Identities=23% Similarity=0.278 Sum_probs=55.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCC------CCCChhHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKF------DVESESGRARILY 247 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~ 247 (610)
..+++-|+|++|+||||||.+++...... -..++|++....+++. .+..++.+. ...+..+....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 45789999999999999999988776543 4568899887776653 345555432 1122333333333
Q ss_pred HHHhCCCeEEEEEeCCC
Q 007268 248 DRLKKEERILVILDNIW 264 (610)
Q Consensus 248 ~~L~~~kr~LLVLDdv~ 264 (610)
..+.++..-++|+|.+-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 33344567799999874
No 168
>PRK06526 transposase; Provisional
Probab=96.98 E-value=0.0009 Score=66.28 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=44.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKE 253 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~ 253 (610)
+...+.|+|++|+|||+||..+........ + .+.|+ +..+++..+..... . .........+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~----~----~~~~~~l~~l~-- 158 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHH----A----GRLQAELVKLG-- 158 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHh----c----CcHHHHHHHhc--
Confidence 345789999999999999999988765431 2 23332 33444454433211 0 11122223332
Q ss_pred CeEEEEEeCCCCc
Q 007268 254 ERILVILDNIWEN 266 (610)
Q Consensus 254 kr~LLVLDdv~~~ 266 (610)
+.-|||+||+...
T Consensus 159 ~~dlLIIDD~g~~ 171 (254)
T PRK06526 159 RYPLLIVDEVGYI 171 (254)
T ss_pred cCCEEEEcccccC
Confidence 4569999999643
No 169
>PRK09354 recA recombinase A; Provisional
Probab=96.97 E-value=0.0036 Score=64.30 Aligned_cols=84 Identities=21% Similarity=0.268 Sum_probs=57.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCC------CCCChhHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKF------DVESESGRARILY 247 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~ 247 (610)
..+++-|+|++|+||||||.+++...... -..++|++....++.. .++.++.+. ......+.+..+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45799999999999999999988776543 4578899988877652 455555542 1223333333333
Q ss_pred HHHhCCCeEEEEEeCCC
Q 007268 248 DRLKKEERILVILDNIW 264 (610)
Q Consensus 248 ~~L~~~kr~LLVLDdv~ 264 (610)
..+.++..-+||+|.|-
T Consensus 132 ~li~s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHhhcCCCCEEEEeChh
Confidence 33445567799999985
No 170
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.97 E-value=0.015 Score=52.19 Aligned_cols=110 Identities=16% Similarity=0.210 Sum_probs=76.6
Q ss_pred hhHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Q 007268 2 AEIILT-IVVEVVKCLAPPAYREISYLRESKYTTNLQNLKAEVDNLKSERDSLLRQVDEAERNGEEIEENVRSWLEAANK 80 (610)
Q Consensus 2 ae~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~i~~~l~~a~~~~~~~~~~v~~Wl~~lr~ 80 (610)
||+++| +++.+++.+...+.+...... ..+.-++.|...+++|..++.+.+......+..-+.-++++.+
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~---------~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~ 73 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSL---------SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKE 73 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHH
Confidence 566654 556667777777776666666 4455556666666666777776666554445555778889999
Q ss_pred HHHHHhHhhHHHHhhccccccccCcchhhhhhHHHHHHHHHHHHHHH
Q 007268 81 VIEEADKFTEDEAAANKRCFKELCPNLKTHRRLSKEAERQKEAVVKV 127 (610)
Q Consensus 81 layd~ed~ld~~~~~~~~~~~~~~~~~~~r~~ia~~i~~l~~rl~~i 127 (610)
...++++++..|..-+ ++++...++.+++|+++...+...
T Consensus 74 ~L~~g~~LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 74 LLEKGKELVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHHHHHHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 9999999998875433 345666777888888888777765
No 171
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.95 E-value=0.042 Score=60.23 Aligned_cols=198 Identities=17% Similarity=0.117 Sum_probs=115.6
Q ss_pred cCccccHHHHHHHHHHhc----C-CCceEEEEEecCCchHHHHHHHHHHHhcc---C---CCCCeEEEEEeCCCCChHHH
Q 007268 154 EAFESRASILNEIMDALK----N-PNVNMLLIYGMGGIGKTTLAKKVARKAES---D---KLFDQVVLSEVSESRDVRKI 222 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~----~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~---~~f~~~~wv~vs~~~~~~~~ 222 (610)
..+-+|+.+..+|-..+. . .....+-|.|-+|+|||..+..|.+.... + ..| ..+.|+.-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecCHHHH
Confidence 456689999988877765 3 33458899999999999999999986541 1 123 3445555566679999
Q ss_pred HHHHHHhhCCCCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCccc--chhhcCCCCC-CCCCeEEEEEec--ccc
Q 007268 223 QGEIADKLGLKFDVESESGRARILYDRLK----KEERILVILDNIWENLD--LLDVGIPHGD-DHKGCKVLFTAR--SEE 293 (610)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~~~--~~~l~~~l~~-~~~gs~IivTTR--~~~ 293 (610)
+..|...+..... .....+..+..++. ..+.++|++|+++..-. -+.+-..|.| ..++||++|.+= ...
T Consensus 475 Y~~I~~~lsg~~~--~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 475 YEKIWEALSGERV--TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHHHHhcccCcc--cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccccc
Confidence 9999999875432 12223444444443 24678999999864421 1111111111 345666655432 122
Q ss_pred cccc-------cCCccceecCCCCCHHHHHHHHHHHhCCC--CCCchHHHHHHHHHHHcCCchHHHHHHH
Q 007268 294 VLSG-------EMESRKNFPVGFLKEEEAWSLFKKMAGDY--VEGSELEEVARNVVEECAGLPVSIVTVA 354 (610)
Q Consensus 294 va~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~--~~~~~~~~~~~~I~~~c~GlPLai~~i~ 354 (610)
.... ..-+...+...|.++++-.++...++.+. ..+...+-++++|+...|-.-.|+...-
T Consensus 553 lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 1110 11223467778888888888877776432 2222333344555555554444444443
No 172
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.93 E-value=0.003 Score=73.69 Aligned_cols=106 Identities=23% Similarity=0.327 Sum_probs=62.1
Q ss_pred cCccccHHHHHHHHHHhcC-------C--CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHH
Q 007268 154 EAFESRASILNEIMDALKN-------P--NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQG 224 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~-------~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (610)
..++|.+..++.+...+.. + ...++.++|++|+|||++|+.+....... ....+.++++.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch---
Confidence 4578999999888887752 1 13578899999999999999999876432 23445555554322111
Q ss_pred HHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc
Q 007268 225 EIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN 266 (610)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~ 266 (610)
+...+|.++..... +....+.+.+......+|+||+++..
T Consensus 640 -~~~l~g~~~g~~g~-~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 640 -VARLIGAPPGYVGY-EEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred -HHHhcCCCCCccCc-ccccHHHHHHHcCCCcEEEEeccccC
Confidence 11122322211111 11123444444334459999999754
No 173
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.92 E-value=0.0028 Score=64.53 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=68.7
Q ss_pred ccHHHHHHHHHHhcC----CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCC
Q 007268 158 SRASILNEIMDALKN----PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLK 233 (610)
Q Consensus 158 GR~~~~~~L~~~L~~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (610)
+|........+++.. ...+-+.|+|..|+|||.||..+++....+ .+ .+.+++++ +++..+....+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~-~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GV-SSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CC-CEEEEEHH------HHHHHHHHHHhcC
Confidence 455555555555542 234679999999999999999999998743 23 34555543 4555555444211
Q ss_pred CCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc--ccchh--hcCCCCC-C-CCCeEEEEEeccc
Q 007268 234 FDVESESGRARILYDRLKKEERILVILDNIWEN--LDLLD--VGIPHGD-D-HKGCKVLFTARSE 292 (610)
Q Consensus 234 ~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~--~~~~~--l~~~l~~-~-~~gs~IivTTR~~ 292 (610)
......+.+. +-=||||||+... ..|.. +...+.. . ..+-.+|+||.-.
T Consensus 207 --------~~~~~l~~l~--~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 207 --------SVKEKIDAVK--EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred --------cHHHHHHHhc--CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 1233444443 5679999999533 45543 3222211 1 1334588888643
No 174
>PRK07261 topology modulation protein; Provisional
Probab=96.92 E-value=0.0028 Score=58.98 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=25.6
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccC-CCCCeEEE
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESD-KLFDQVVL 210 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~-~~f~~~~w 210 (610)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998775432 12455555
No 175
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.005 Score=67.09 Aligned_cols=159 Identities=14% Similarity=0.082 Sum_probs=88.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC--ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR--DVRKIQGEIADKLGLKFDVESESGRARILYDRLK 251 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~ 251 (610)
...-|.|.|+.|+|||+||+.+++... +...-.+.+++++.-. .++.+.+.+-.- ..+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v----------------fse~~~ 492 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV----------------FSEALW 492 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHH----------------HHHHHh
Confidence 346789999999999999999999987 4455567777776432 233222222111 112222
Q ss_pred CCCeEEEEEeCCCCcc--------cchh-----------hcCCCCCCCCCeEEEEEeccccccccc----CCccceecCC
Q 007268 252 KEERILVILDNIWENL--------DLLD-----------VGIPHGDDHKGCKVLFTARSEEVLSGE----MESRKNFPVG 308 (610)
Q Consensus 252 ~~kr~LLVLDdv~~~~--------~~~~-----------l~~~l~~~~~gs~IivTTR~~~va~~~----~~~~~~~~l~ 308 (610)
-.+-++||||++... +|.. +...+...++.-++|.|.....-.... .--..++.|.
T Consensus 493 -~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 493 -YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred -hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 368999999996331 2211 111111122222445554443322111 1223478899
Q ss_pred CCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCc-hHHHH
Q 007268 309 FLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGL-PVSIV 351 (610)
Q Consensus 309 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~ 351 (610)
++...+-.++++.......... ..+...-+..+|+|. |.-+.
T Consensus 572 ap~~~~R~~IL~~~~s~~~~~~-~~~dLd~ls~~TEGy~~~DL~ 614 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLSDI-TMDDLDFLSVKTEGYLATDLV 614 (952)
T ss_pred CcchhHHHHHHHHHHHhhhhhh-hhHHHHHHHHhcCCccchhHH
Confidence 9998888888887764333211 223333488888875 34333
No 176
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0034 Score=66.12 Aligned_cols=93 Identities=28% Similarity=0.338 Sum_probs=61.0
Q ss_pred cCcccc---HHHHHHHHHHhcCC---------CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHH
Q 007268 154 EAFESR---ASILNEIMDALKNP---------NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRK 221 (610)
Q Consensus 154 ~~~vGR---~~~~~~L~~~L~~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (610)
.++-|- ..|++++++.|.++ =++=|.++|++|.|||-||+.++-...+- +|...+..|+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP------FF~~sGSEFd--- 374 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP------FFYASGSEFD--- 374 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC------eEeccccchh---
Confidence 344454 45678888988754 25678999999999999999999876653 2333333332
Q ss_pred HHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc
Q 007268 222 IQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN 266 (610)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~ 266 (610)
+++-.. -...+..+...-+..-+|+|.+|.++..
T Consensus 375 ---Em~VGv--------GArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 375 ---EMFVGV--------GARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred ---hhhhcc--------cHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 111111 1234556666666668999999998754
No 177
>PRK12377 putative replication protein; Provisional
Probab=96.89 E-value=0.0047 Score=60.81 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=48.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKE 253 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~ 253 (610)
....+.|+|.+|+|||+||..+++....+ ...++++++. +++..+-...... .....+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~-------~~~~~~l~~l~-- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG-------QSGEKFLQELC-- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc-------chHHHHHHHhc--
Confidence 34679999999999999999999988754 3345666543 3444444333210 11223444443
Q ss_pred CeEEEEEeCCC
Q 007268 254 ERILVILDNIW 264 (610)
Q Consensus 254 kr~LLVLDdv~ 264 (610)
+.-||||||+.
T Consensus 163 ~~dLLiIDDlg 173 (248)
T PRK12377 163 KVDLLVLDEIG 173 (248)
T ss_pred CCCEEEEcCCC
Confidence 56799999994
No 178
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.88 E-value=0.0022 Score=69.95 Aligned_cols=76 Identities=26% Similarity=0.440 Sum_probs=56.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
+..+++.++|++|.||||||+-++++.. | .++=|++|..-+...+-..|...+........ .
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a-------------d 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA-------------D 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------C
Confidence 3468999999999999999999998865 3 47778899888887777777665533211100 1
Q ss_pred CCeEEEEEeCCCCc
Q 007268 253 EERILVILDNIWEN 266 (610)
Q Consensus 253 ~kr~LLVLDdv~~~ 266 (610)
+++.-||+|.++-.
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 57888999998754
No 179
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.85 E-value=0.0063 Score=69.41 Aligned_cols=102 Identities=18% Similarity=0.281 Sum_probs=59.2
Q ss_pred CccccHHHHHHHHHHhc-------C-C-CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHH
Q 007268 155 AFESRASILNEIMDALK-------N-P-NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGE 225 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~-------~-~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (610)
.++|.++.++.|.+.+. + + ....+.++|++|+|||++|+.++..... ..+.++++...... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----c
Confidence 46788888888877765 1 1 2357899999999999999999887732 23444544332211 1
Q ss_pred HHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc
Q 007268 226 IADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN 266 (610)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~ 266 (610)
+..-+|.++.... .+....+.+.+......+|+||+++..
T Consensus 530 ~~~LiG~~~gyvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 2222333221111 011122334444444579999999855
No 180
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.84 E-value=0.0084 Score=58.32 Aligned_cols=229 Identities=14% Similarity=0.150 Sum_probs=124.5
Q ss_pred cCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCC----CCCeEEEEEeCCC----------C--
Q 007268 154 EAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDK----LFDQVVLSEVSES----------R-- 217 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~f~~~~wv~vs~~----------~-- 217 (610)
..+.++++.-..|......+..+-..++|++|.||-|.+..+.+..-.-+ .-+..-|.+-+.. .
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 34667777777777776667788999999999999998888877653311 1233445444332 1
Q ss_pred ---------ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeE-EEEEeCCCCc--ccchhhcCCCCCCCCCeEE
Q 007268 218 ---------DVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERI-LVILDNIWEN--LDLLDVGIPHGDDHKGCKV 285 (610)
Q Consensus 218 ---------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~-LLVLDdv~~~--~~~~~l~~~l~~~~~gs~I 285 (610)
.-.-+.+++++.++...+.+. ...+.| ++|+-.+++. +.-..+....-.-.+.+|+
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie~------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~Rl 160 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIET------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRL 160 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchhh------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceE
Confidence 112233333333221111000 012445 5555555543 1111221111112346677
Q ss_pred EEEeccccc-ccccCCccceecCCCCCHHHHHHHHHHHhCCCC-CCchHHHHHHHHHHHcCCchHHHHHHHHHHh--cC-
Q 007268 286 LFTARSEEV-LSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYV-EGSELEEVARNVVEECAGLPVSIVTVARALR--NK- 360 (610)
Q Consensus 286 ivTTR~~~v-a~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~--~~- 360 (610)
|+...+..- ........-.+++...+++|....+.+.+.... .-| .+++++|+++++|+---...+...++ +.
T Consensus 161 Il~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~ 238 (351)
T KOG2035|consen 161 ILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEP 238 (351)
T ss_pred EEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcccc
Confidence 775444321 111223345789999999999999999885332 222 57899999999987644434433333 11
Q ss_pred --------CHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhHccC
Q 007268 361 --------GIREWKDALEQLRRPSSSNFKDVQPAAFKAIELSYNKL 398 (610)
Q Consensus 361 --------~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~Sy~~L 398 (610)
..-+|+-+..+.......+. .+..+.++-..=|+-|
T Consensus 239 ~~a~~~~i~~~dWe~~i~e~a~~i~~eQ--s~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 239 FTANSQVIPKPDWEIYIQEIARVILKEQ--SPAKLLEVRGRLYELL 282 (351)
T ss_pred ccccCCCCCCccHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHH
Confidence 34579888776543222211 2455555555445544
No 181
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0058 Score=60.58 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=52.0
Q ss_pred HHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHH
Q 007268 166 IMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARI 245 (610)
Q Consensus 166 L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 245 (610)
+.+++. +..-+.++|.+|+|||.||..+.+... +..+ .+.+++ ..+++.++...... ......
T Consensus 98 ~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~-------~~~~~~ 160 (254)
T COG1484 98 LVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDE-------GRLEEK 160 (254)
T ss_pred HHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhc-------CchHHH
Confidence 344444 667899999999999999999999988 3223 445553 44566666554432 112223
Q ss_pred HHHHHhCCCeEEEEEeCCCC
Q 007268 246 LYDRLKKEERILVILDNIWE 265 (610)
Q Consensus 246 l~~~L~~~kr~LLVLDdv~~ 265 (610)
+.+.+. +-=||||||+-.
T Consensus 161 l~~~l~--~~dlLIiDDlG~ 178 (254)
T COG1484 161 LLRELK--KVDLLIIDDIGY 178 (254)
T ss_pred HHHHhh--cCCEEEEecccC
Confidence 333343 456999999854
No 182
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.01 Score=64.47 Aligned_cols=154 Identities=17% Similarity=0.221 Sum_probs=86.3
Q ss_pred CcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh
Q 007268 153 YEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV 219 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~ 219 (610)
..++-|-++...+|.+... -..++=|.++|++|.|||++|+.+++..... | +.++.+
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp--- 502 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP--- 502 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH---
Confidence 3445556666666554443 2467889999999999999999999987654 3 222211
Q ss_pred HHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc-------------chhhcCCCCCCC--CCeE
Q 007268 220 RKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD-------------LLDVGIPHGDDH--KGCK 284 (610)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~-------------~~~l~~~l~~~~--~gs~ 284 (610)
+++... -+ ..+..+..+.+.-++--+++|.||.++.... +..+...+.... .+.-
T Consensus 503 -EL~sk~--------vG-eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 503 -ELFSKY--------VG-ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred -HHHHHh--------cC-chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 111111 01 1122344455544445679999998864311 112222221111 2233
Q ss_pred EEEEecccccc-cccCC---ccceecCCCCCHHHHHHHHHHHhCCC
Q 007268 285 VLFTARSEEVL-SGEME---SRKNFPVGFLKEEEAWSLFKKMAGDY 326 (610)
Q Consensus 285 IivTTR~~~va-~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~ 326 (610)
||-.|...... ...+. -...+.+++-+.+.-.++|+.++...
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 33334333322 22333 34678888888899999999998643
No 183
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.81 E-value=0.0017 Score=66.66 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=41.1
Q ss_pred CccccHHHHHHHHHHhc------CCCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 155 AFESRASILNEIMDALK------NPNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.++|-++.++++++++. ..+.+++.|+|++|+||||||..+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 68899999999999886 234688999999999999999999988765
No 184
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.027 Score=60.58 Aligned_cols=131 Identities=21% Similarity=0.338 Sum_probs=83.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKE 253 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~ 253 (610)
.+.=|.+||++|+|||-||+.+++..... | +++..+ +++..-+ | ..+..+..+.++-+..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~N--F-----isVKGP----ELlNkYV---G------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGAN--F-----ISVKGP----ELLNKYV---G------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCc--e-----EeecCH----HHHHHHh---h------hHHHHHHHHHHHhhcC
Confidence 35568899999999999999999987754 3 444332 2222211 1 1233566777777777
Q ss_pred CeEEEEEeCCCCcc-------c------chhhcCCCC--CCCCCeEEEEEecccccc-cccCC---ccceecCCCCCHHH
Q 007268 254 ERILVILDNIWENL-------D------LLDVGIPHG--DDHKGCKVLFTARSEEVL-SGEME---SRKNFPVGFLKEEE 314 (610)
Q Consensus 254 kr~LLVLDdv~~~~-------~------~~~l~~~l~--~~~~gs~IivTTR~~~va-~~~~~---~~~~~~l~~L~~~e 314 (610)
-+|+|.||.++... . ...+...+. ....|.-||-.|....+. ..... -...+.++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 89999999997431 1 122322221 123466677777666543 11122 23567788888999
Q ss_pred HHHHHHHHhC
Q 007268 315 AWSLFKKMAG 324 (610)
Q Consensus 315 a~~Lf~~~~~ 324 (610)
-.++++....
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 9999998886
No 185
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.81 E-value=0.0045 Score=72.06 Aligned_cols=106 Identities=18% Similarity=0.301 Sum_probs=59.9
Q ss_pred cCccccHHHHHHHHHHhcC-------C-C-ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHH
Q 007268 154 EAFESRASILNEIMDALKN-------P-N-VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQG 224 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~-------~-~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (610)
..++|.+..++.+...+.. + + ..++.++|+.|+|||+||+.+++..... -...+.++++.... ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-hh---
Confidence 3578998888887777651 1 1 2478899999999999999999765422 22345555543221 11
Q ss_pred HHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc
Q 007268 225 EIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN 266 (610)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~ 266 (610)
.+..-+|.++..... +....+.+.+.....-+|+||++...
T Consensus 642 ~~~~LiG~~pgy~g~-~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 SVSRLVGAPPGYVGY-EEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred hHHHHhCCCCccccc-chhHHHHHHHHhCCCCeEEEeehhhC
Confidence 111223332221111 11122344444333469999999744
No 186
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.025 Score=59.79 Aligned_cols=160 Identities=20% Similarity=0.279 Sum_probs=87.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHH--
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRL-- 250 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L-- 250 (610)
.+...+.+.|++|+|||+||..++.... |..+--++...-..+ ++......+.+.+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~miG~------------------sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMIGL------------------SESAKCAHIKKIFED 593 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHccCc------------------cHHHHHHHHHHHHHH
Confidence 3567788999999999999999987643 765544433222211 1222222222222
Q ss_pred -hCCCeEEEEEeCCCCcccchhhcCCCC---------------CCCCCeEEEEEecccccccc-cC-C-ccceecCCCCC
Q 007268 251 -KKEERILVILDNIWENLDLLDVGIPHG---------------DDHKGCKVLFTARSEEVLSG-EM-E-SRKNFPVGFLK 311 (610)
Q Consensus 251 -~~~kr~LLVLDdv~~~~~~~~l~~~l~---------------~~~~gs~IivTTR~~~va~~-~~-~-~~~~~~l~~L~ 311 (610)
.+..--.||+||+...-+|-.++..+. ..+..--|+-||....+... .+ . -...|.++.++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 223456899999988877766544332 22223334446655555521 11 1 23478888887
Q ss_pred H-HHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHh
Q 007268 312 E-EEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALR 358 (610)
Q Consensus 312 ~-~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~ 358 (610)
. ++..+.+...- ...+...+.++.+...+| +-..|+.+..++.
T Consensus 674 ~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~--~~vgIKklL~lie 717 (744)
T KOG0741|consen 674 TGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLIE 717 (744)
T ss_pred chHHHHHHHHHcc--CCCcchhHHHHHHHhccc--cchhHHHHHHHHH
Confidence 6 67777766642 112233344555555555 3334555444443
No 187
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.79 E-value=0.0012 Score=57.41 Aligned_cols=24 Identities=42% Similarity=0.648 Sum_probs=22.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+|.|.|++|+||||+|+.+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999999863
No 188
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.0056 Score=63.68 Aligned_cols=89 Identities=19% Similarity=0.254 Sum_probs=56.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
+..++.++|+.|+||||++..++.....+.....+..++.... ....+-++...+.++.+................+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~- 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR- 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-
Confidence 3469999999999999999999987643311235666654432 34556667777777776543333323334444443
Q ss_pred CCeEEEEEeCCC
Q 007268 253 EERILVILDNIW 264 (610)
Q Consensus 253 ~kr~LLVLDdv~ 264 (610)
++-++++|..-
T Consensus 215 -~~DlVLIDTaG 225 (374)
T PRK14722 215 -NKHMVLIDTIG 225 (374)
T ss_pred -CCCEEEEcCCC
Confidence 34667799884
No 189
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.79 E-value=0.0061 Score=70.93 Aligned_cols=106 Identities=20% Similarity=0.287 Sum_probs=60.5
Q ss_pred cCccccHHHHHHHHHHhc-------CC--CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHH
Q 007268 154 EAFESRASILNEIMDALK-------NP--NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQG 224 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~-------~~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (610)
..++|.+..++.+...+. ++ ...++.++|+.|+|||+||+.+++..-.. -...+-++.+.-.....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhcccccc---
Confidence 457888888888877764 11 12457799999999999999999876322 12344455544322111
Q ss_pred HHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc
Q 007268 225 EIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN 266 (610)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~ 266 (610)
+...+|.++.-.. .+....+.+.+......+++||+++..
T Consensus 584 -~~~l~g~~~gyvg-~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 584 -VSKLIGSPPGYVG-YNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred -HHHhcCCCCcccC-cCccchHHHHHHhCCCeEEEECChhhC
Confidence 1111232211111 111223445555433468999999754
No 190
>PRK09183 transposase/IS protein; Provisional
Probab=96.78 E-value=0.0016 Score=64.81 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=22.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
...+.|+|++|+|||+||..++.....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999877543
No 191
>PTZ00494 tuzin-like protein; Provisional
Probab=96.78 E-value=0.093 Score=54.81 Aligned_cols=164 Identities=11% Similarity=0.122 Sum_probs=100.8
Q ss_pred CCCCcCccccHHHHHHHHHHhc---CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHH
Q 007268 150 NKDYEAFESRASILNEIMDALK---NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEI 226 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 226 (610)
+.....++.|+.+-..+.+.|. ...++++++.|.-|.||++|.+........ ..++|++....+ -++.|
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~ED---tLrsV 438 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTED---TLRSV 438 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCcc---hHHHH
Confidence 3445678899888776666665 456899999999999999999998877653 467788876544 56889
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHH------hCCCeEEEEEeCCCCcccchhh---cCCCCCCCCCeEEEEEecccccc--
Q 007268 227 ADKLGLKFDVESESGRARILYDRL------KKEERILVILDNIWENLDLLDV---GIPHGDDHKGCKVLFTARSEEVL-- 295 (610)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L------~~~kr~LLVLDdv~~~~~~~~l---~~~l~~~~~gs~IivTTR~~~va-- 295 (610)
++.|+.+.-+. -.+.++.+-+.. .+++.-+||+-== +...+..+ ...+.....-|.|++----+.+.
T Consensus 439 VKALgV~nve~-CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~ 516 (664)
T PTZ00494 439 VRALGVSNVEV-CGDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPL 516 (664)
T ss_pred HHHhCCCChhh-hccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCCcHHHHHHHHHHHHccchhheeeeechHhhhchh
Confidence 99998874321 112233322222 1355556665311 11111111 01222233456676654333321
Q ss_pred cccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 296 SGEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
....+.-..|.+++++.++|.++..+..
T Consensus 517 n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 517 NVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hccCccceeEecCCcCHHHHHHHHhccc
Confidence 2233455689999999999999887764
No 192
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.76 E-value=0.0083 Score=59.61 Aligned_cols=89 Identities=25% Similarity=0.288 Sum_probs=55.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccC----CCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC----------CCChh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESD----KLFDQVVLSEVSESRDVRKIQGEIADKLGLKFD----------VESES 240 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------~~~~~ 240 (610)
..+.-|+|.+|+|||+|+.+++-..... ..-..++|++....++...+. +|++..+.+.+ ..+..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4688999999999999999987654321 122479999999999887664 56766554311 00111
Q ss_pred ---HHHHHHHHHHhCCCeEEEEEeCCC
Q 007268 241 ---GRARILYDRLKKEERILVILDNIW 264 (610)
Q Consensus 241 ---~~~~~l~~~L~~~kr~LLVLDdv~ 264 (610)
..+..+...+.+.+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 122333333434456688888873
No 193
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.74 E-value=0.0073 Score=60.98 Aligned_cols=88 Identities=24% Similarity=0.323 Sum_probs=52.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
+.++++|+|++|+||||++..++.....+..-..+..++..... ...+.+....+.++.+.........+....+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 45799999999999999999998877543111345666654322 2333444455556655433333333444444443
Q ss_pred CCeEEEEEeCC
Q 007268 253 EERILVILDNI 263 (610)
Q Consensus 253 ~kr~LLVLDdv 263 (610)
..=+|++|..
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 2357777753
No 194
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.013 Score=60.36 Aligned_cols=166 Identities=16% Similarity=0.131 Sum_probs=78.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCC-C---Ce-----EEEEEeCCCCChHHHHHHHH-HhhCCCCCCCChhHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKL-F---DQ-----VVLSEVSESRDVRKIQGEIA-DKLGLKFDVESESGRA 243 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-f---~~-----~~wv~vs~~~~~~~~~~~i~-~~l~~~~~~~~~~~~~ 243 (610)
-...+.++|+.|+|||++|..++...--... . .| +.++..+..+++..+...=. ..-+ .....-..+.+
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g-~~~~~I~id~i 98 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENG-RKLLQIKIDAV 98 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccccccc-ccCCCcCHHHH
Confidence 3467889999999999999999887532110 0 00 00000011111000000000 0000 00000112333
Q ss_pred HHHHHHHh----CCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEecccc-cccccCCccceecCCCCCHHHHH
Q 007268 244 RILYDRLK----KEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARSEE-VLSGEMESRKNFPVGFLKEEEAW 316 (610)
Q Consensus 244 ~~l~~~L~----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~ 316 (610)
..+.+.+. .+++-++|+|+++..+ .-..+...+.....++.+|++|.+.. +..........+.+.+++.+++.
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~ 178 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEAL 178 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHH
Confidence 44444443 1344455668876542 22222111111113455666666643 43333445678999999999999
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHcCCchHH
Q 007268 317 SLFKKMAGDYVEGSELEEVARNVVEECAGLPVS 349 (610)
Q Consensus 317 ~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 349 (610)
+.+... + . ... . ..+..++|.|+.
T Consensus 179 ~~L~~~-~--~-~~~--~---~~l~~~~g~p~~ 202 (325)
T PRK08699 179 AYLRER-G--V-AEP--E---ERLAFHSGAPLF 202 (325)
T ss_pred HHHHhc-C--C-CcH--H---HHHHHhCCChhh
Confidence 888764 1 1 111 1 123568899964
No 195
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.72 E-value=0.0077 Score=58.71 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=38.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCC----CCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDK----LFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
...++.|+|.+|+|||+||.+++....... .-..++|++....++...+ ..+...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~ 76 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVR 76 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH-HHHHHH
Confidence 357999999999999999999987654321 1157889998877665443 333333
No 196
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.70 E-value=0.0076 Score=61.61 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=57.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccC----CCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCC----------CCh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESD----KLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDV----------ESE 239 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------~~~ 239 (610)
...++-|+|++|+|||+|+.+++-..... ..-..++||+....++++.+. ++++.++.+.+. .+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCH
Confidence 34788999999999999999887543211 112478999999988888764 466777654321 011
Q ss_pred h---HHHHHHHHHHhCCCeEEEEEeCCC
Q 007268 240 S---GRARILYDRLKKEERILVILDNIW 264 (610)
Q Consensus 240 ~---~~~~~l~~~L~~~kr~LLVLDdv~ 264 (610)
. +.+..+...+.+++.-|||+|.+.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 1 122333333444455578888774
No 197
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.69 E-value=0.0075 Score=56.41 Aligned_cols=75 Identities=29% Similarity=0.323 Sum_probs=45.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKE 253 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~ 253 (610)
...-+.|+|.+|+|||.||..+.+....+ -..+.|++ ..+++..+-.. .... ....+.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~------~~~L~~~l~~~----~~~~----~~~~~~~~l~-- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFIT------ASDLLDELKQS----RSDG----SYEELLKRLK-- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEE------HHHHHHHHHCC----HCCT----THCHHHHHHH--
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEee------cCceecccccc----cccc----chhhhcCccc--
Confidence 34679999999999999999999887653 22455664 34455544322 1111 1233455555
Q ss_pred CeEEEEEeCCCCc
Q 007268 254 ERILVILDNIWEN 266 (610)
Q Consensus 254 kr~LLVLDdv~~~ 266 (610)
+.=||||||+-..
T Consensus 108 ~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 RVDLLILDDLGYE 120 (178)
T ss_dssp TSSCEEEETCTSS
T ss_pred cccEeccccccee
Confidence 3468899999643
No 198
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.68 E-value=0.013 Score=53.49 Aligned_cols=40 Identities=33% Similarity=0.522 Sum_probs=31.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
++.|+|.+|+|||+++..++...... -..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcchH
Confidence 36899999999999999998887542 45678887765543
No 199
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.67 E-value=0.0083 Score=58.49 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=35.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRK 221 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (610)
...++.|+|.+|+|||++|.+++...... -..++|++.. .++...
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHH
Confidence 35799999999999999999998876543 4678999887 555443
No 200
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.65 E-value=0.029 Score=56.23 Aligned_cols=169 Identities=18% Similarity=0.189 Sum_probs=101.7
Q ss_pred cCccccHHHHHHHHHHhc----CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh-HHHHHHHHH
Q 007268 154 EAFESRASILNEIMDALK----NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV-RKIQGEIAD 228 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~-~~~~~~i~~ 228 (610)
..++|-.++-.++-.|+. .+....|.|+|+.|.|||+|......+.+. .-...+-|......-. .-.++.|..
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~--~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE--NGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh--cCCeEEEEEECccchhhHHHHHHHHH
Confidence 467888888888888876 345568899999999999999888777222 1234444555443322 224445555
Q ss_pred hhCCCC-----CCCChhHHHHHHHHHHhC-----CCeEEEEEeCCCCccc-------chhhcCCCCCCCCCeEEEEEecc
Q 007268 229 KLGLKF-----DVESESGRARILYDRLKK-----EERILVILDNIWENLD-------LLDVGIPHGDDHKGCKVLFTARS 291 (610)
Q Consensus 229 ~l~~~~-----~~~~~~~~~~~l~~~L~~-----~kr~LLVLDdv~~~~~-------~~~l~~~l~~~~~gs~IivTTR~ 291 (610)
++.... ...+-.+.+..+...|.+ +.++++|+|.++-... +.-+...-....+-|-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 543221 123344556777777763 3458889988864321 11111122224556677889987
Q ss_pred cccc------cccCCccceecCCCCCHHHHHHHHHHHhC
Q 007268 292 EEVL------SGEMESRKNFPVGFLKEEEAWSLFKKMAG 324 (610)
Q Consensus 292 ~~va------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (610)
.-.- ..-.....++-+++++.++-..++++...
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 6432 11122333666778888899999888773
No 201
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.65 E-value=0.015 Score=55.56 Aligned_cols=116 Identities=14% Similarity=0.209 Sum_probs=68.2
Q ss_pred CCCcCccccHHHHHHHHHH----hcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHH
Q 007268 151 KDYEAFESRASILNEIMDA----LKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEI 226 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~----L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 226 (610)
.+...++|-+...+.|++- +..-...-|.+||--|+|||+|++.+.+....+ .-. -|.+.+.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k~---------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDKE---------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcHH----------
Confidence 3445678877776666543 334455679999999999999999999988765 222 2222211
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHh-CCCeEEEEEeCCCC---cccchhhcCCCCC---CCCCeEEEEEeccc
Q 007268 227 ADKLGLKFDVESESGRARILYDRLK-KEERILVILDNIWE---NLDLLDVGIPHGD---DHKGCKVLFTARSE 292 (610)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~-~~kr~LLVLDdv~~---~~~~~~l~~~l~~---~~~gs~IivTTR~~ 292 (610)
+...+..+.+.|+ ...||+|..||+.= ......+...+-. ..+..-++..|.++
T Consensus 123 ------------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ------------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ------------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1112334444444 26789999999852 2345555444322 22333344444443
No 202
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.62 E-value=0.013 Score=57.53 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=35.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGE 225 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (610)
...++.|.|.+|+|||++|.++......+ -..++|++... ++.++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHH
Confidence 45799999999999999999987665432 45788888765 44455554
No 203
>PRK06696 uridine kinase; Validated
Probab=96.61 E-value=0.003 Score=61.49 Aligned_cols=44 Identities=25% Similarity=0.365 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHHhc---CCCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 158 SRASILNEIMDALK---NPNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 158 GR~~~~~~L~~~L~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.|.+.+++|.+.+. .+++.+|+|.|.+|+||||||+.+......
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46777778877774 456789999999999999999999988754
No 204
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.61 E-value=0.014 Score=57.31 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=53.6
Q ss_pred HHHHHHHHhcC--CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCCh
Q 007268 162 ILNEIMDALKN--PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESE 239 (610)
Q Consensus 162 ~~~~L~~~L~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 239 (610)
.+..+.++... .+...+.++|.+|+|||+||..+++....+ -..+++++ ..+++..+-.... . ..
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~-~-~~--- 150 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFS-N-SE--- 150 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHh-h-cc---
Confidence 44445544432 233578999999999999999999987654 23556664 3445555444332 1 11
Q ss_pred hHHHHHHHHHHhCCCeEEEEEeCCCCc
Q 007268 240 SGRARILYDRLKKEERILVILDNIWEN 266 (610)
Q Consensus 240 ~~~~~~l~~~L~~~kr~LLVLDdv~~~ 266 (610)
.....+.+.+. +.=||||||+...
T Consensus 151 -~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 151 -TSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred -ccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 11223444554 3458999999643
No 205
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.60 E-value=0.083 Score=56.45 Aligned_cols=87 Identities=24% Similarity=0.324 Sum_probs=52.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCCCCCCC----ChhHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGLKFDVE----SESGRARILYD 248 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~ 248 (610)
.+.+|.++|.+|+||||+|..++....... + .+..+++... +...+.+..++..++.+.... +....+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 467999999999999999999998876542 2 4444544322 223455666777777653221 11222333333
Q ss_pred HHhCCCeEEEEEeCCC
Q 007268 249 RLKKEERILVILDNIW 264 (610)
Q Consensus 249 ~L~~~kr~LLVLDdv~ 264 (610)
.+.. . -++|+|..-
T Consensus 172 ~~~~-~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKK-A-DVIIVDTAG 185 (437)
T ss_pred Hhhc-C-CEEEEECCC
Confidence 3332 2 567778763
No 206
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.035 Score=60.99 Aligned_cols=152 Identities=22% Similarity=0.217 Sum_probs=83.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKE 253 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~ 253 (610)
..+.+.++|++|.|||.||+.+++..... |-.+.+ . .++.. .-. .....+..+...-.+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--fi~v~~-----~--------~l~sk----~vG-esek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--FISVKG-----S--------ELLSK----WVG-ESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--EEEeeC-----H--------HHhcc----ccc-hHHHHHHHHHHHHHcC
Confidence 45689999999999999999999965432 322221 1 01100 000 1122334444444446
Q ss_pred CeEEEEEeCCCCcccch-------------hhcCCCC--CCCCCeEEEEEeccccccccc-C---CccceecCCCCCHHH
Q 007268 254 ERILVILDNIWENLDLL-------------DVGIPHG--DDHKGCKVLFTARSEEVLSGE-M---ESRKNFPVGFLKEEE 314 (610)
Q Consensus 254 kr~LLVLDdv~~~~~~~-------------~l~~~l~--~~~~gs~IivTTR~~~va~~~-~---~~~~~~~l~~L~~~e 314 (610)
.++.|.+|.++....+. .+...+. ....+..||-||......... . .-...+.+.+-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 89999999997542211 1222221 123344455566554433111 1 224588999999999
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHcCC
Q 007268 315 AWSLFKKMAGDYVEGSELEEVARNVVEECAG 345 (610)
Q Consensus 315 a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~G 345 (610)
..+.|..+.......-...-....+++...|
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 9999999986433221111223445555544
No 207
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.56 E-value=0.0064 Score=56.79 Aligned_cols=36 Identities=31% Similarity=0.503 Sum_probs=29.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEE
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLS 211 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv 211 (610)
+..+|.|.|+.|+||||+|+.++...... +..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 45699999999999999999999988643 5555555
No 208
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.097 Score=58.00 Aligned_cols=99 Identities=23% Similarity=0.408 Sum_probs=65.9
Q ss_pred cCCCCCcCccccHHHHHHHHHHhc---------CCC---ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 148 IPNKDYEAFESRASILNEIMDALK---------NPN---VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 148 ~~~~~~~~~vGR~~~~~~L~~~L~---------~~~---~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
.|...-.++-|-++.+.+|.+-+. ..+ ..=|.++|++|.|||-||++|+....- -|++|..
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKG 738 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKG 738 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecC
Confidence 334444566678888888877664 122 345889999999999999999987543 2444443
Q ss_pred CCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc
Q 007268 216 SRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN 266 (610)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~ 266 (610)
+ +++..-+ | ..++-++.+.++-++.++|+|.||.+++.
T Consensus 739 P----ELLNMYV---G------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 739 P----ELLNMYV---G------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred H----HHHHHHh---c------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 3 1222211 1 12345677777777789999999999865
No 209
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.024 Score=58.96 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=51.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
++++|+|+|++|+||||++..++.....+ -..+..++..... ...+-+...++.++.+.........+......+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 45799999999999999999998876543 1234455554321 23333444555566554322233333344444432
Q ss_pred -CCeEEEEEeCCC
Q 007268 253 -EERILVILDNIW 264 (610)
Q Consensus 253 -~kr~LLVLDdv~ 264 (610)
.+.=++++|-.-
T Consensus 318 ~~~~DvVLIDTaG 330 (436)
T PRK11889 318 EARVDYILIDTAG 330 (436)
T ss_pred ccCCCEEEEeCcc
Confidence 123467777663
No 210
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.50 E-value=0.021 Score=64.60 Aligned_cols=149 Identities=20% Similarity=0.272 Sum_probs=80.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCe
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEER 255 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr 255 (610)
+-|.|+|++|+|||++|+.++...... | +.++.+. +.. +. .+ .....+..+........+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~------~~~-~~--~g------~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD------FVE-MF--VG------VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH------hHH-hh--hc------ccHHHHHHHHHHHHhcCC
Confidence 459999999999999999998876532 2 2222221 111 00 00 011223333334444578
Q ss_pred EEEEEeCCCCcc------------c----chhhcCCCC--CCCCCeEEEEEecccccccc-cC---CccceecCCCCCHH
Q 007268 256 ILVILDNIWENL------------D----LLDVGIPHG--DDHKGCKVLFTARSEEVLSG-EM---ESRKNFPVGFLKEE 313 (610)
Q Consensus 256 ~LLVLDdv~~~~------------~----~~~l~~~l~--~~~~gs~IivTTR~~~va~~-~~---~~~~~~~l~~L~~~ 313 (610)
++|++|+++... . ...+...+. ....+.-+|.||........ .. .-.+.+.+...+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 999999986531 0 111211111 12234455567766553311 11 22467888888988
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCc
Q 007268 314 EAWSLFKKMAGDYVEGSELEEVARNVVEECAGL 346 (610)
Q Consensus 314 ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 346 (610)
+-.+++..++......+.. ....+++.+.|.
T Consensus 326 ~R~~Il~~~~~~~~l~~~~--d~~~la~~t~G~ 356 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDI--DAAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHhhcCCCCCcC--CHHHHHhhCCCC
Confidence 8889998887543222211 123466666663
No 211
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.49 E-value=0.015 Score=59.91 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=43.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhcc----CCCCCeEEEEEeCCCCChHHHHHHHHHhhCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAES----DKLFDQVVLSEVSESRDVRKIQGEIADKLGLK 233 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~----~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (610)
...++-|+|.+|+|||+|+.+++-.... ...-..++||+....+++..+.+ +++.++.+
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 3478889999999999999998754322 11124789999999998887644 66777664
No 212
>PRK04296 thymidine kinase; Provisional
Probab=96.46 E-value=0.0044 Score=58.73 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=63.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCC---CChhHHHHHHHHHHhC
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDV---ESESGRARILYDRLKK 252 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~L~~ 252 (610)
.++.|+|+.|.||||+|..++.+.... -..++.+. ..++.......++.+++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 478899999999999999999887643 23333332 1112222244566666654332 122233333333 33
Q ss_pred CCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEeccccc
Q 007268 253 EERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARSEEV 294 (610)
Q Consensus 253 ~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v 294 (610)
++.-+||+|.+.-. ++...+...+ ...|..||+|.++...
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 34568999998543 2222222211 2346789999988554
No 213
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.41 E-value=0.021 Score=58.60 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=43.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCC----CCCeEEEEEeCCCCChHHHHHHHHHhhCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDK----LFDQVVLSEVSESRDVRKIQGEIADKLGLK 233 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (610)
...++-|+|.+|+|||+++.+++....... .-..++||+....++...+. ++++.++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~ 156 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLD 156 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCC
Confidence 357889999999999999999987754211 11379999999888877654 455555543
No 214
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.39 E-value=0.14 Score=52.03 Aligned_cols=167 Identities=11% Similarity=0.038 Sum_probs=94.1
Q ss_pred HHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHh--------ccCCCCCeEEEEEe-CCCCChHHHHHHHHHhhCC
Q 007268 163 LNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKA--------ESDKLFDQVVLSEV-SESRDVRKIQGEIADKLGL 232 (610)
Q Consensus 163 ~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~--------~~~~~f~~~~wv~v-s~~~~~~~~~~~i~~~l~~ 232 (610)
++.+.+.+..++ .++..++|..|.||+++|..+.+.. ....|.+.+.++.. +......++ +++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhcc
Confidence 344555555543 4677799999999999999999886 22222323344432 222233322 233433332
Q ss_pred CCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEec-ccccccccCCccceecCCC
Q 007268 233 KFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTAR-SEEVLSGEMESRKNFPVGF 309 (610)
Q Consensus 233 ~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR-~~~va~~~~~~~~~~~l~~ 309 (610)
.+- ..+.+=++|+|+++... ....+...+-.-..++.+|++|. ...+..........+++.+
T Consensus 84 ~~~---------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~ 148 (299)
T PRK07132 84 SSF---------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKE 148 (299)
T ss_pred CCc---------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCC
Confidence 210 01467788899986553 23344333333344566665554 4444333345578899999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHH
Q 007268 310 LKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVT 352 (610)
Q Consensus 310 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 352 (610)
++.++..+.+... + .+ .+.+..++...+|.=-|+..
T Consensus 149 l~~~~l~~~l~~~-~---~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 149 PDQQKILAKLLSK-N---KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCHHHHHHHHHHc-C---CC---hhHHHHHHHHcCCHHHHHHH
Confidence 9999998887764 1 11 13455566666662244444
No 215
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.39 E-value=0.23 Score=52.69 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=28.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEe
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEV 213 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~v 213 (610)
.+.+|.++|+.|+||||++..++.....+. + .+..|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcC
Confidence 468999999999999999999987765432 2 3444444
No 216
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.38 E-value=0.028 Score=54.95 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=26.6
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
++..+++|.|+.|+|||||++.+.......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567899999999999999999999887653
No 217
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.36 E-value=0.03 Score=56.97 Aligned_cols=86 Identities=22% Similarity=0.273 Sum_probs=53.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC------CCChhHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFD------VESESGRARILY 247 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 247 (610)
..+++-|+|+.|+||||||.++....... -..++|++....+++. .+..+|.+.+ ++..++.+..+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 35799999999999999999998876543 4578999998876653 4555666532 223333444343
Q ss_pred HHHhCCCeEEEEEeCCCCc
Q 007268 248 DRLKKEERILVILDNIWEN 266 (610)
Q Consensus 248 ~~L~~~kr~LLVLDdv~~~ 266 (610)
..++.+..-++|+|-|-..
T Consensus 125 ~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHTTSESEEEEE-CTT-
T ss_pred HHhhcccccEEEEecCccc
Confidence 3445556668999988644
No 218
>PRK06921 hypothetical protein; Provisional
Probab=96.33 E-value=0.017 Score=57.75 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=45.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKE 253 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~ 253 (610)
....+.++|..|+|||+||..+++....+. ...++|++. .+++..+...+ +......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~~-- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRMK-- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHhc--
Confidence 456799999999999999999999876431 234566654 23333332221 11222333443
Q ss_pred CeEEEEEeCC
Q 007268 254 ERILVILDNI 263 (610)
Q Consensus 254 kr~LLVLDdv 263 (610)
+-=||||||+
T Consensus 177 ~~dlLiIDDl 186 (266)
T PRK06921 177 KVEVLFIDDL 186 (266)
T ss_pred CCCEEEEecc
Confidence 4569999999
No 219
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.32 E-value=0.034 Score=57.66 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=62.0
Q ss_pred HHHHHHHhcCC----CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCCCCCCC
Q 007268 163 LNEIMDALKNP----NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGLKFDVE 237 (610)
Q Consensus 163 ~~~L~~~L~~~----~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~ 237 (610)
...+..++.++ +.++|+++|+.|+||||-...++.+..-...-..+..|+.... ....+-++.-++-++.+....
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv 266 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVV 266 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEe
Confidence 34445555444 4799999999999998655555554441112345677766543 245566777788888887665
Q ss_pred ChhHHHHHHHHHHhCCCeEEEEEeCCC
Q 007268 238 SESGRARILYDRLKKEERILVILDNIW 264 (610)
Q Consensus 238 ~~~~~~~~l~~~L~~~kr~LLVLDdv~ 264 (610)
.....+......+.. .=+|.+|-+-
T Consensus 267 ~~~~el~~ai~~l~~--~d~ILVDTaG 291 (407)
T COG1419 267 YSPKELAEAIEALRD--CDVILVDTAG 291 (407)
T ss_pred cCHHHHHHHHHHhhc--CCEEEEeCCC
Confidence 555555555666653 2455567653
No 220
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.32 E-value=0.024 Score=58.38 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=42.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCC----CCeEEEEEeCCCCChHHHHHHHHHhhCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKL----FDQVVLSEVSESRDVRKIQGEIADKLGL 232 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (610)
...++-|+|++|+|||+++.+++........ -..++||+....+++..+. ++++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 4578999999999999999999876543211 1479999999888876654 44555554
No 221
>PRK04328 hypothetical protein; Provisional
Probab=96.30 E-value=0.019 Score=56.91 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=32.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
...++.|.|.+|+|||+|+.++......+ -..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 45799999999999999999987764333 456788887664
No 222
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.30 E-value=0.018 Score=55.73 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=33.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
...++.|.|.+|+||||+|.+++...... -..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 45789999999999999999998876533 34678887665543
No 223
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.27 E-value=0.031 Score=58.70 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=55.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccC--CCCCeEEEEEeCCC-CChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESD--KLFDQVVLSEVSES-RDVRKIQGEIADKLGLKFDVESESGRARILYDRL 250 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L 250 (610)
.+++|.++|+.|+||||.+..++...... ..-..+..+++... ....+.++..++.++.+.........+......+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 45799999999999999999998776532 11235666666542 2233446667777777654333333333333333
Q ss_pred hCCCeEEEEEeCCC
Q 007268 251 KKEERILVILDNIW 264 (610)
Q Consensus 251 ~~~kr~LLVLDdv~ 264 (610)
.+.-++++|.+-
T Consensus 253 --~~~DlVLIDTaG 264 (388)
T PRK12723 253 --KDFDLVLVDTIG 264 (388)
T ss_pred --CCCCEEEEcCCC
Confidence 245688889874
No 224
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.26 E-value=0.015 Score=52.21 Aligned_cols=45 Identities=29% Similarity=0.454 Sum_probs=35.9
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCC
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKF 234 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 234 (610)
+|.|.|++|+||||+|+.+++...-. | .+.-.++++|++..|.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCCH
Confidence 68999999999999999999987643 1 123357899999888763
No 225
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.25 E-value=0.015 Score=58.77 Aligned_cols=134 Identities=17% Similarity=0.263 Sum_probs=74.9
Q ss_pred CccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHH-HhccCCCCCeEEE----EEeCCCC---------ChH
Q 007268 155 AFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVAR-KAESDKLFDQVVL----SEVSESR---------DVR 220 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~-~~~~~~~f~~~~w----v~vs~~~---------~~~ 220 (610)
++-+|..+-.--+++|.++....|.+.|.+|+|||-||....- +.-.+..|..++- +.++++. .+.
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~ 304 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMG 304 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhcc
Confidence 3455666666678888999999999999999999999977643 3333444554332 2333321 112
Q ss_pred HHHHHHHHhhCCC--CCCCChhHHHHHHHHH--Hh-------CC---CeEEEEEeCCCCcc--cchhhcCCCCCCCCCeE
Q 007268 221 KIQGEIADKLGLK--FDVESESGRARILYDR--LK-------KE---ERILVILDNIWENL--DLLDVGIPHGDDHKGCK 284 (610)
Q Consensus 221 ~~~~~i~~~l~~~--~~~~~~~~~~~~l~~~--L~-------~~---kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~ 284 (610)
-.++.|...|..- ..... ...+..+... ++ +| ..-++|+|.+.+.. +...+.. ..+.|||
T Consensus 305 PWmq~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTilt---R~G~GsK 380 (436)
T COG1875 305 PWMQAIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILT---RAGEGSK 380 (436)
T ss_pred chHHHHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHH---hccCCCE
Confidence 2233333322110 01111 2222222111 00 12 24689999998763 4555533 4678999
Q ss_pred EEEEeccc
Q 007268 285 VLFTARSE 292 (610)
Q Consensus 285 IivTTR~~ 292 (610)
|+.|--..
T Consensus 381 IVl~gd~a 388 (436)
T COG1875 381 IVLTGDPA 388 (436)
T ss_pred EEEcCCHH
Confidence 99887543
No 226
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.23 E-value=0.022 Score=58.46 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=41.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccC----CCCCeEEEEEeCCCCChHHHHHHHHHhhCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESD----KLFDQVVLSEVSESRDVRKIQGEIADKLGLK 233 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (610)
...++.|+|.+|+|||+|+..++...... ..-..++|++....++... +.++++.++..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence 35789999999999999999987643211 0123679999988877765 44456665543
No 227
>PTZ00035 Rad51 protein; Provisional
Probab=96.22 E-value=0.03 Score=57.94 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=41.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhcc---C-CCCCeEEEEEeCCCCChHHHHHHHHHhhCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAES---D-KLFDQVVLSEVSESRDVRKIQGEIADKLGLK 233 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~-~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (610)
...++.|+|.+|+|||+|+..++-.... . ..-..++|++....+++.. +.++++.++..
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~ 179 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLD 179 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCC
Confidence 3578999999999999999998755431 0 1123677999888777766 44556666543
No 228
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.20 E-value=0.029 Score=54.83 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=35.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGL 232 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (610)
...++.|.|.+|+||||+|.+++.....+ -..+++++... +..++++.+ ..++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e~--~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQL--TTTEFIKQM-MSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCCC--CHHHHHHHH-HHhCC
Confidence 34699999999999999998776655332 13456666433 445666665 34443
No 229
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.034 Score=55.43 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=55.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh-hCCC-CCCCChhHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK-LGLK-FDVESESGRARILYDRLK 251 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~~~~l~~~L~ 251 (610)
..+++=|+|+.|+||||+|.+++-..... -..++|++....++++.+.. ++.. +..- .......+....+.+.+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 45788999999999999999987766543 44899999999998876543 3333 2211 111122222223333332
Q ss_pred -CC--CeEEEEEeCCC
Q 007268 252 -KE--ERILVILDNIW 264 (610)
Q Consensus 252 -~~--kr~LLVLDdv~ 264 (610)
.. +--|+|+|.+-
T Consensus 136 ~~~~~~i~LvVVDSva 151 (279)
T COG0468 136 RSGAEKIDLLVVDSVA 151 (279)
T ss_pred HhccCCCCEEEEecCc
Confidence 11 35688999874
No 230
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.38 Score=53.04 Aligned_cols=152 Identities=16% Similarity=0.255 Sum_probs=87.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCe
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEER 255 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr 255 (610)
.=|.++|++|.|||.||..++.....+ +|++..+ +++.+ .+|. .++.++.+..+-+.-++
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~K---yIGa------SEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLSK---YIGA------SEQNVRDLFERAQSAKP 761 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHHH---Hhcc------cHHHHHHHHHHhhccCC
Confidence 448899999999999999998775432 4555443 22222 2221 23456777777777899
Q ss_pred EEEEEeCCCCccc-------------chhhcCCCC--CCCCCeEEEE-EecccccccccCCc---cceecCCCCCHHHHH
Q 007268 256 ILVILDNIWENLD-------------LLDVGIPHG--DDHKGCKVLF-TARSEEVLSGEMES---RKNFPVGFLKEEEAW 316 (610)
Q Consensus 256 ~LLVLDdv~~~~~-------------~~~l~~~l~--~~~~gs~Iiv-TTR~~~va~~~~~~---~~~~~l~~L~~~ea~ 316 (610)
|+|.||.+++... ...+...+. .+-.|.-|+. |||..-+-.....+ .+.+.-+.-++.+-.
T Consensus 762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl 841 (952)
T KOG0735|consen 762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL 841 (952)
T ss_pred eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence 9999999976421 223322221 1234555554 55655432222222 233444455667777
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHcCCchHH
Q 007268 317 SLFKKMAGDYVEGSELEEVARNVVEECAGLPVS 349 (610)
Q Consensus 317 ~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 349 (610)
++|.........+. .-..+.++.+..|..-|
T Consensus 842 ~il~~ls~s~~~~~--~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 842 EILQVLSNSLLKDT--DVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHhhccCCcc--ccchHHHhhhcCCCchh
Confidence 78777664211111 12345677777776544
No 231
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.18 E-value=0.043 Score=54.57 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=57.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCC-------CCCCChhH----
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLK-------FDVESESG---- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 241 (610)
+...++|.|.+|+|||+|+..+++....+ +-+.++++-+++.. ...++.+++...-..+ ...++...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 44678999999999999999999988754 12456677776654 4556666665432111 11111111
Q ss_pred --HHHHHHHHHh-C-CCeEEEEEeCCCC
Q 007268 242 --RARILYDRLK-K-EERILVILDNIWE 265 (610)
Q Consensus 242 --~~~~l~~~L~-~-~kr~LLVLDdv~~ 265 (610)
..-.+.+++. + ++.+||++||+-.
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1223455553 3 7999999999853
No 232
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.033 Score=57.68 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=57.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
+.++++|+|+.|+||||++..++.....+ -..+.++++.... ...+-++..++.++.+.........+....+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 45799999999999999999998776443 2356677765432 23456666777777654333333334444444431
Q ss_pred -CCeEEEEEeCCCC
Q 007268 253 -EERILVILDNIWE 265 (610)
Q Consensus 253 -~kr~LLVLDdv~~ 265 (610)
+..=++++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 2346788887743
No 233
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.026 Score=58.17 Aligned_cols=96 Identities=28% Similarity=0.316 Sum_probs=63.4
Q ss_pred HHHHHHhcCC--CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCC--Ch
Q 007268 164 NEIMDALKNP--NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVE--SE 239 (610)
Q Consensus 164 ~~L~~~L~~~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~ 239 (610)
.++-..|..+ ...+|.|-|-+|+|||||..+++.+...+. .+.||+-.+. ..+ .+--+.+|+.+.+.- -.
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l~a 153 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYLLA 153 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HHH-HHHHHHHhCCCccceEEeh
Confidence 3444444431 346899999999999999999999988653 6777765543 222 233456677544321 11
Q ss_pred hHHHHHHHHHHhCCCeEEEEEeCCCC
Q 007268 240 SGRARILYDRLKKEERILVILDNIWE 265 (610)
Q Consensus 240 ~~~~~~l~~~L~~~kr~LLVLDdv~~ 265 (610)
+..++.+.+.+.+.++-|+|+|-+..
T Consensus 154 Et~~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 154 ETNLEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred hcCHHHHHHHHHhcCCCEEEEeccce
Confidence 22356677777767899999998853
No 234
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.17 E-value=0.021 Score=59.77 Aligned_cols=85 Identities=28% Similarity=0.300 Sum_probs=54.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCC--ChhHHHHHHHHHHhC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVE--SESGRARILYDRLKK 252 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~L~~ 252 (610)
..++.|.|.+|+|||||+.+++...... -..++|++.... ..++ ..-+..++...+.. .....+..+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4689999999999999999999876643 346788876543 3332 22345565443211 011124455555554
Q ss_pred CCeEEEEEeCCC
Q 007268 253 EERILVILDNIW 264 (610)
Q Consensus 253 ~kr~LLVLDdv~ 264 (610)
.+.-+||+|.+.
T Consensus 157 ~~~~lVVIDSIq 168 (372)
T cd01121 157 LKPDLVIIDSIQ 168 (372)
T ss_pred cCCcEEEEcchH
Confidence 567789999874
No 235
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.16 E-value=0.094 Score=58.20 Aligned_cols=64 Identities=14% Similarity=0.234 Sum_probs=45.1
Q ss_pred CCCcCccccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 151 KDYEAFESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
.....++|....+.++.+.+. ......|.|+|..|+|||++|+.+.+..... -...+.+++...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~--~~pfv~i~c~~~ 258 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA--KRPFVKVNCAAL 258 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeecCCC
Confidence 345678999998888887765 2334567899999999999999998865422 123445555543
No 236
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.16 E-value=0.022 Score=58.89 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=43.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccC----CCCCeEEEEEeCCCCChHHHHHHHHHhhCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESD----KLFDQVVLSEVSESRDVRKIQGEIADKLGLK 233 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (610)
...++-|+|.+|+|||+|+..++-..... ..-..++|++....++++.+ .+|++.++.+
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 35788899999999999999887543311 11237999999999888765 5667777654
No 237
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.13 E-value=0.019 Score=53.99 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=31.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHH
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGE 225 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (610)
++.|.|++|+|||+||.+++...... -..++|++.... ..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC--HHHHHHH
Confidence 36799999999999999988776532 245778876543 4444333
No 238
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.12 E-value=0.038 Score=54.20 Aligned_cols=86 Identities=14% Similarity=0.249 Sum_probs=54.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC------------------
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFD------------------ 235 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------------ 235 (610)
...++.|+|.+|+|||+|+.++......+ -..++|++.... +.++.+++ .+++....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 45799999999999999999997654322 357888888654 34555543 33433211
Q ss_pred ---CCChhHHHHHHHHHHhCCCeEEEEEeCCC
Q 007268 236 ---VESESGRARILYDRLKKEERILVILDNIW 264 (610)
Q Consensus 236 ---~~~~~~~~~~l~~~L~~~kr~LLVLDdv~ 264 (610)
.......+..+.+.+.+.+.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 01113344555555554456689999875
No 239
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.11 E-value=0.024 Score=52.33 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=24.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
....+.|+|++|.|||||.+.+|...+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 4468999999999999999999987654
No 240
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.10 E-value=0.063 Score=57.21 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=35.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGLK 233 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 233 (610)
++.++.++|++|+||||+|..++.....+..+ .+..|++... +...+.+.......+.+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp 157 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVP 157 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCc
Confidence 46799999999999999999988775422112 3444444321 11233344445555443
No 241
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.07 E-value=0.0098 Score=63.48 Aligned_cols=51 Identities=16% Similarity=0.297 Sum_probs=41.6
Q ss_pred cCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCC
Q 007268 154 EAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFD 206 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~ 206 (610)
..++||++.++.+...+..+ ..|.|.|++|+|||+||+.+.........|.
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 46889999999998888654 4688999999999999999998765443443
No 242
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.07 E-value=0.038 Score=55.67 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=23.8
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+.+|+|.|..|+||||+|+.+.....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999988766554
No 243
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.06 E-value=0.033 Score=51.72 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=46.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCCCCC----CCChhHHHHHHHHHHh
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGLKFD----VESESGRARILYDRLK 251 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~L~ 251 (610)
++.++|++|+||||++..++...... -..++.++.... ....+.+...+...+.+.. ..+.............
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999876643 123444554322 1233334444444443311 1122222323333333
Q ss_pred CCCeEEEEEeCCCC
Q 007268 252 KEERILVILDNIWE 265 (610)
Q Consensus 252 ~~kr~LLVLDdv~~ 265 (610)
.+..-++|+|..-.
T Consensus 80 ~~~~d~viiDt~g~ 93 (173)
T cd03115 80 EENFDVVIVDTAGR 93 (173)
T ss_pred hCCCCEEEEECccc
Confidence 22333566887643
No 244
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.06 E-value=0.0025 Score=56.93 Aligned_cols=45 Identities=22% Similarity=0.357 Sum_probs=30.8
Q ss_pred cccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 157 ESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 157 vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
+|+...++++.+.+. ......|.|+|..|+||+++|+.+......
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 355556666665554 234457899999999999999988876553
No 245
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.15 Score=48.94 Aligned_cols=132 Identities=20% Similarity=0.271 Sum_probs=75.1
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
.+++=+.++|++|.|||-||+.+++.. ++.|+.+|.. ++.+..+.. ....+..+.--.+.
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs----elvqk~ige---------gsrmvrelfvmare 238 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS----ELVQKYIGE---------GSRMVRELFVMARE 238 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----HHHHHHhhh---------hHHHHHHHHHHHHh
Confidence 467789999999999999999998753 4456666643 222222110 01122223222233
Q ss_pred CCeEEEEEeCCCCccc----------------chhhcCCCC--CCCCCeEEEEEeccccccc-ccC---CccceecCCCC
Q 007268 253 EERILVILDNIWENLD----------------LLDVGIPHG--DDHKGCKVLFTARSEEVLS-GEM---ESRKNFPVGFL 310 (610)
Q Consensus 253 ~kr~LLVLDdv~~~~~----------------~~~l~~~l~--~~~~gs~IivTTR~~~va~-~~~---~~~~~~~l~~L 310 (610)
.-+-+|..|.+++... .-.+...+. ...++-+||..|..-.+.. ... ...+.++..+-
T Consensus 239 hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p 318 (404)
T KOG0728|consen 239 HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPP 318 (404)
T ss_pred cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCC
Confidence 4577888888764311 011111111 1234668888776655541 112 23456888888
Q ss_pred CHHHHHHHHHHHhC
Q 007268 311 KEEEAWSLFKKMAG 324 (610)
Q Consensus 311 ~~~ea~~Lf~~~~~ 324 (610)
+++.-.++++-+..
T Consensus 319 ~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 319 NEEARLDILKIHSR 332 (404)
T ss_pred CHHHHHHHHHHhhh
Confidence 88877788776653
No 246
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.04 E-value=0.76 Score=48.17 Aligned_cols=59 Identities=25% Similarity=0.385 Sum_probs=41.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeC-CCCChHHHHHHHHHhhCCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVS-ESRDVRKIQGEIADKLGLKF 234 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~ 234 (610)
.+.+|..+|.-|.||||.|-.+++..+.+. + .+.-|++. ..+..-+-++.+..+.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~-~-kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKG-K-KVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcC-C-ceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 467899999999999999999998887631 2 23333332 22344566777888887653
No 247
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.04 E-value=0.0088 Score=64.76 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=42.3
Q ss_pred CcCccccHHHHHHHHHHhc------CCCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 153 YEAFESRASILNEIMDALK------NPNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
..+++|-++.+++|++.|. +.+.+++.++|++|+||||||+.+++-.+.
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3468899999999999883 556689999999999999999999987764
No 248
>PRK10867 signal recognition particle protein; Provisional
Probab=96.03 E-value=0.055 Score=57.68 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=24.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.+.+|.++|++|+||||++..++.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4689999999999999998888876654
No 249
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.02 E-value=0.36 Score=49.36 Aligned_cols=47 Identities=26% Similarity=0.184 Sum_probs=33.6
Q ss_pred eecCCCCCHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHcCCchHHH
Q 007268 304 NFPVGFLKEEEAWSLFKKMAGDYVEG--SELEEVARNVVEECAGLPVSI 350 (610)
Q Consensus 304 ~~~l~~L~~~ea~~Lf~~~~~~~~~~--~~~~~~~~~I~~~c~GlPLai 350 (610)
.+++++++.+|+..++..+....... ...+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999999887422211 223345666777779999644
No 250
>PRK06547 hypothetical protein; Provisional
Probab=96.01 E-value=0.01 Score=55.18 Aligned_cols=35 Identities=37% Similarity=0.419 Sum_probs=28.5
Q ss_pred HHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 166 IMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 166 L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+...+......+|+|.|++|+||||+|+.+.....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33445567788999999999999999999998754
No 251
>PRK14974 cell division protein FtsY; Provisional
Probab=96.01 E-value=0.068 Score=55.07 Aligned_cols=90 Identities=22% Similarity=0.229 Sum_probs=51.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCCCCCC----CChhHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGLKFDV----ESESGRARILYD 248 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~ 248 (610)
++.++.++|++|+||||++..++...... .+ .++.+..... ....+.+...+..++.+... .+....+....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 46899999999999999999888776543 23 3444443211 12334456677777765321 111122222222
Q ss_pred HHhCCCeEEEEEeCCCC
Q 007268 249 RLKKEERILVILDNIWE 265 (610)
Q Consensus 249 ~L~~~kr~LLVLDdv~~ 265 (610)
.......-++++|..-.
T Consensus 217 ~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 217 HAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHhCCCCEEEEECCCc
Confidence 22222233889998753
No 252
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.00 E-value=0.037 Score=55.23 Aligned_cols=116 Identities=22% Similarity=0.153 Sum_probs=65.0
Q ss_pred CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCC-C-------CCCCChhHHH
Q 007268 172 NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGL-K-------FDVESESGRA 243 (610)
Q Consensus 172 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~-~-------~~~~~~~~~~ 243 (610)
......++|.|+.|+|||||.+.++..... ..+.+++.-..-... +-..++...... + .+..+.....
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchHH
Confidence 344578999999999999999999977653 234444321111100 111233222211 1 1111111223
Q ss_pred HHHHHHHhCCCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEeccccc
Q 007268 244 RILYDRLKKEERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEV 294 (610)
Q Consensus 244 ~~l~~~L~~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 294 (610)
..+...+....+-++++|.+-..+.+..+...+ ..|..+|+||.+..+
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 334444444578899999987766665554443 246679999987554
No 253
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.99 E-value=0.018 Score=51.40 Aligned_cols=42 Identities=31% Similarity=0.420 Sum_probs=32.1
Q ss_pred EEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHH
Q 007268 178 LLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQG 224 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (610)
|.|+|++|+|||+||+.+++... ....-+.++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEecccccccccee
Confidence 67999999999999999999873 2345567777777766543
No 254
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.023 Score=59.78 Aligned_cols=85 Identities=21% Similarity=0.215 Sum_probs=48.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKE 253 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~ 253 (610)
..++.++|++|+||||++..++........+ .+..++.... ....+.+...++.++.+.... .....+.+.+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~---~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV---KDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeeh---HHHHHHHHHHHhC
Confidence 4689999999999999999998765322112 3444443321 123344555556666543221 1233444444433
Q ss_pred CeEEEEEeCC
Q 007268 254 ERILVILDNI 263 (610)
Q Consensus 254 kr~LLVLDdv 263 (610)
..=++|+|-.
T Consensus 299 ~~D~VLIDTa 308 (432)
T PRK12724 299 GSELILIDTA 308 (432)
T ss_pred CCCEEEEeCC
Confidence 3356888843
No 255
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.98 E-value=0.036 Score=53.72 Aligned_cols=41 Identities=20% Similarity=0.085 Sum_probs=28.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
+|+|.|.+|+||||+|+.+.........-..+..++...-.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 58999999999999999999887531111234555555443
No 256
>PRK07667 uridine kinase; Provisional
Probab=95.97 E-value=0.017 Score=54.81 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=29.5
Q ss_pred HHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 164 NEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 164 ~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
+.|.+.+. .++..+|+|.|.+|+||||+|..+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444 345579999999999999999999988754
No 257
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.93 E-value=0.032 Score=55.02 Aligned_cols=77 Identities=10% Similarity=0.151 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHHHHHhHhhHHHHh
Q 007268 16 LAPPAYREISYLRESKYTTNLQNLKAEVDNLKSERDSLLRQVDEAERN-GEEIEENVRSWLEAANKVIEEADKFTEDEAA 94 (610)
Q Consensus 16 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~i~~~l~~a~~~-~~~~~~~v~~Wl~~lr~layd~ed~ld~~~~ 94 (610)
.++.+.+.+..+. ..|...+..++.+++-++.+++++|.||++..+. .+.++. ...+..++-+.||++|.++|-+-.
T Consensus 297 yVdFlL~NLkdfq-~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~-~ed~a~~ii~kAyevEYVVDaCi~ 374 (402)
T PF12061_consen 297 YVDFLLKNLKDFQ-GRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDT-NEDCATQIIRKAYEVEYVVDACIS 374 (402)
T ss_pred HHHHHHhhHHHHh-ccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhh-hhhHHHHHHHHHhheeeeeehhhc
Confidence 3456666666665 4566677889999999999999999999987444 444444 999999999999999999997543
No 258
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.90 E-value=0.0098 Score=53.27 Aligned_cols=29 Identities=38% Similarity=0.510 Sum_probs=25.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDK 203 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~ 203 (610)
..-|.|.|++|+||||+++.+.+..+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 35689999999999999999999887754
No 259
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.89 E-value=0.007 Score=52.90 Aligned_cols=22 Identities=45% Similarity=0.656 Sum_probs=20.5
Q ss_pred EEEEecCCchHHHHHHHHHHHh
Q 007268 178 LLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~ 199 (610)
|.|.|.+|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 260
>PTZ00301 uridine kinase; Provisional
Probab=95.87 E-value=0.022 Score=54.64 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=23.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+|+|.|.+|+||||||+.+.....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999987764
No 261
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.87 E-value=0.036 Score=62.81 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=58.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC------CCChhHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFD------VESESGRARILY 247 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 247 (610)
..+++-|+|.+|+|||||+.+++...... -..++|++....++. ..++++|.+.+ ..+.+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 45789999999999999999877655433 356799988887774 36777777532 223333344444
Q ss_pred HHHhCCCeEEEEEeCCC
Q 007268 248 DRLKKEERILVILDNIW 264 (610)
Q Consensus 248 ~~L~~~kr~LLVLDdv~ 264 (610)
..+.+++.-|||+|.+.
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 44455677899999975
No 262
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.85 E-value=0.021 Score=53.60 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+|.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999998764
No 263
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.054 Score=52.38 Aligned_cols=95 Identities=19% Similarity=0.331 Sum_probs=59.9
Q ss_pred CCCcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 151 KDYEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
..+.++-|-.+.+++|.+... -+.++=|.++|++|.|||-+|+.++++.... | +.|-.
T Consensus 174 vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--f-----irvig-- 244 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--F-----IRVIG-- 244 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--E-----Eeehh--
Confidence 345566788888888877654 1356778999999999999999999876432 2 21111
Q ss_pred ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCC
Q 007268 218 DVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWE 265 (610)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~ 265 (610)
.++.+.-+ | .....+..+.+-.+..|-|+|.||.++.
T Consensus 245 --selvqkyv---g------egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 245 --SELVQKYV---G------EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred --HHHHHHHh---h------hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 11111111 1 1122344555555567889999998863
No 264
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.31 Score=47.15 Aligned_cols=55 Identities=24% Similarity=0.399 Sum_probs=43.2
Q ss_pred cccCCCCCcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 146 RLIPNKDYEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 146 ~~~~~~~~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+..|...+.++-|-+..+++|++.+. -..++=|..+|++|.|||-+|+..+.+..
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 44555667778889999999988764 12456788999999999999999887654
No 265
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.84 E-value=0.038 Score=55.11 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=31.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
...++.|.|.+|+|||++|.+++.....+ -..+++++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC
Confidence 45789999999999999999987765433 346788888643
No 266
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.83 E-value=0.067 Score=53.63 Aligned_cols=89 Identities=25% Similarity=0.266 Sum_probs=49.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCCCC----CCChhHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLKFD----VESESGRARILYD 248 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~ 248 (610)
+.+++.++|++|+||||++..++...... -..+.+++..... ...+-+....+..+.+.- ..+..........
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 46799999999999999999998877543 2356666654321 122334444555554321 1111122212222
Q ss_pred HHhCCCeEEEEEeCCC
Q 007268 249 RLKKEERILVILDNIW 264 (610)
Q Consensus 249 ~L~~~kr~LLVLDdv~ 264 (610)
.+..+..=++++|-.-
T Consensus 149 ~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 149 KAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHCCCCEEEEeCCC
Confidence 2222334578888764
No 267
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.82 E-value=0.053 Score=57.96 Aligned_cols=86 Identities=19% Similarity=0.240 Sum_probs=49.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc-cCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE-SDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
.+++.++|++|+||||++..++.... .. .-..+..|+..... ...+.+....+.++.+.........+......+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-
Confidence 46899999999999999999887665 21 13456677664421 1223344445556655433222222333333332
Q ss_pred CCeEEEEEeCC
Q 007268 253 EERILVILDNI 263 (610)
Q Consensus 253 ~kr~LLVLDdv 263 (610)
..=+|++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3468888966
No 268
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.77 E-value=0.06 Score=55.62 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=36.9
Q ss_pred cccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 157 ESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 157 vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
+|+...+.++.+.+. .....-|.|+|..|+||+++|+.+....... -...+-|++..
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~--~~pfv~vnc~~ 60 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRW--QGPLVKLNCAA 60 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCcc--CCCeEEEeCCC
Confidence 566666666665554 2334568999999999999999987654422 12334455543
No 269
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.75 E-value=0.0092 Score=53.39 Aligned_cols=24 Identities=38% Similarity=0.719 Sum_probs=21.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987654
No 270
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.74 E-value=0.019 Score=56.77 Aligned_cols=60 Identities=27% Similarity=0.312 Sum_probs=45.4
Q ss_pred HHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHH
Q 007268 165 EIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQG 224 (610)
Q Consensus 165 ~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (610)
+|+..+. .++..+|+|.|.||+|||||.-.+......+.+--.++=|+-|++++--.++-
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 4555444 56778999999999999999999999987776555677777777776444433
No 271
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.73 E-value=0.017 Score=55.14 Aligned_cols=109 Identities=11% Similarity=0.157 Sum_probs=57.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChH-HHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCC
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVR-KIQGEIADKLGLKFDVESESGRARILYDRLKKEE 254 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~k 254 (610)
.+|.|+|+.|+||||++..+....... ....++. +..+.... .-...+..+-.. ..........+...+.. .
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t-~e~~~E~~~~~~~~~i~q~~v---g~~~~~~~~~i~~aLr~-~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILT-IEDPIEFVHESKRSLINQREV---GLDTLSFENALKAALRQ-D 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEE-EcCCccccccCccceeeeccc---CCCccCHHHHHHHHhcC-C
Confidence 478999999999999999887766432 2333332 22211100 000011111000 01112233445555654 5
Q ss_pred eEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEeccccc
Q 007268 255 RILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEV 294 (610)
Q Consensus 255 r~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 294 (610)
+=++++|.+.+.+.+....... ..|..++.|+....+
T Consensus 75 pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 6799999998766554432221 234557777766544
No 272
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.71 E-value=0.017 Score=52.29 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=28.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEE
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSE 212 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~ 212 (610)
..+|.|+|.+|+||||||+.+....... -..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 4689999999999999999999998765 34555554
No 273
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.68 E-value=0.0099 Score=56.49 Aligned_cols=26 Identities=42% Similarity=0.543 Sum_probs=23.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccC
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
+|+|.|.+|+||||+|+.+.......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988753
No 274
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.67 E-value=0.051 Score=53.30 Aligned_cols=118 Identities=25% Similarity=0.285 Sum_probs=65.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC-----CCChHHHHHHHHHhhCCCCC-------CCChhH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE-----SRDVRKIQGEIADKLGLKFD-------VESESG 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~-------~~~~~~ 241 (610)
+..+++|+|.+|+||||+++.+..-... -.+.+++.-.+ .....+-..+++..++.+.. .-+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 4578999999999999999999987653 23444443221 22233445666677665421 111122
Q ss_pred HHHH-HHHHHhCCCeEEEEEeCCCCcccc------hhhcCCCCCCCCCeEEEEEeccccccc
Q 007268 242 RARI-LYDRLKKEERILVILDNIWENLDL------LDVGIPHGDDHKGCKVLFTARSEEVLS 296 (610)
Q Consensus 242 ~~~~-l~~~L~~~kr~LLVLDdv~~~~~~------~~l~~~l~~~~~gs~IivTTR~~~va~ 296 (610)
.... +...|. -++-++|.|..-+..+. ..+...+. ...|...++.|.+-.++.
T Consensus 115 rQRi~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 115 RQRIGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVR 174 (268)
T ss_pred hhhHHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhh
Confidence 2222 333343 57899999987544221 11111111 122445777777776654
No 275
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.65 E-value=0.07 Score=50.41 Aligned_cols=41 Identities=34% Similarity=0.483 Sum_probs=29.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCC--------CeEEEEEeCCC
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLF--------DQVVLSEVSES 216 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f--------~~~~wv~vs~~ 216 (610)
.++.|.|++|+|||+++.+++........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 589999999999999999998877653222 36888877766
No 276
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.076 Score=56.30 Aligned_cols=88 Identities=19% Similarity=0.270 Sum_probs=49.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC-CCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE-SRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
+..+++++|+.|+||||++..++...........+.++.... .....+-+....+.++.+................+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~- 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR- 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc-
Confidence 347999999999999999998887643222233444444332 223344455566666665443222222333333333
Q ss_pred CCeEEEEEeCC
Q 007268 253 EERILVILDNI 263 (610)
Q Consensus 253 ~kr~LLVLDdv 263 (610)
..-++++|-.
T Consensus 269 -~~d~VLIDTa 278 (420)
T PRK14721 269 -GKHMVLIDTV 278 (420)
T ss_pred -CCCEEEecCC
Confidence 2345666654
No 277
>PRK08233 hypothetical protein; Provisional
Probab=95.64 E-value=0.01 Score=55.60 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+|+|.|.+|+||||||..++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 278
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.63 E-value=0.044 Score=49.88 Aligned_cols=116 Identities=22% Similarity=0.249 Sum_probs=61.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC---CCChHHHHHHHH----HhhCCC--CCCCChhH-----
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE---SRDVRKIQGEIA----DKLGLK--FDVESESG----- 241 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~i~----~~l~~~--~~~~~~~~----- 241 (610)
..|-|++..|.||||+|...+-+..... + .+.++..-+ ......++..+- .+.+.. ....+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-Y-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 4788888899999999999888776542 2 334432222 233333333330 000111 00011111
Q ss_pred --HHHHHHHHHhCCCeEEEEEeCCCCc-----ccchhhcCCCCCCCCCeEEEEEecccc
Q 007268 242 --RARILYDRLKKEERILVILDNIWEN-----LDLLDVGIPHGDDHKGCKVLFTARSEE 293 (610)
Q Consensus 242 --~~~~l~~~L~~~kr~LLVLDdv~~~-----~~~~~l~~~l~~~~~gs~IivTTR~~~ 293 (610)
......+.+..+.-=|||||++-.. -..+.+...+.....+.-||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2233344444455569999998543 123333333333444667999999865
No 279
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.60 E-value=0.26 Score=49.54 Aligned_cols=129 Identities=8% Similarity=0.024 Sum_probs=70.0
Q ss_pred HHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHhccC------------CCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 163 LNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKAESD------------KLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 163 ~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~------------~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
-+.|...+..++ .....++|+.|+||+++|..++...-.. .|.|..+........
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~------------ 73 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGR------------ 73 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCC------------
Confidence 456667666554 4677799999999999999998775432 123322111111100
Q ss_pred hCCCCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEecc-cccccccCCcc
Q 007268 230 LGLKFDVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARS-EEVLSGEMESR 302 (610)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~va~~~~~~~ 302 (610)
.-..+.+..+.+.+. .++.-++|+|+++.. +.+..+...+-.-..++.+|++|.+ ..+.+...+..
T Consensus 74 -------~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRc 146 (290)
T PRK05917 74 -------LHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS 146 (290)
T ss_pred -------cCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcc
Confidence 001222333333332 245568899999754 3455554444333345555555555 44443334445
Q ss_pred ceecCCCC
Q 007268 303 KNFPVGFL 310 (610)
Q Consensus 303 ~~~~l~~L 310 (610)
..+.+.++
T Consensus 147 q~~~~~~~ 154 (290)
T PRK05917 147 LSIHIPME 154 (290)
T ss_pred eEEEccch
Confidence 56777665
No 280
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.59 E-value=0.027 Score=54.90 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=37.1
Q ss_pred HHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh
Q 007268 164 NEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV 219 (610)
Q Consensus 164 ~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~ 219 (610)
.++++.+. ..+..+|+|.|++|+|||||...+......+.+--.++=|+-|++++-
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 34444443 456789999999999999999999988876544445666666666653
No 281
>PRK05439 pantothenate kinase; Provisional
Probab=95.58 E-value=0.1 Score=52.98 Aligned_cols=81 Identities=14% Similarity=0.055 Sum_probs=44.4
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHH--HHHhhCCCCCCCChhHHHHHHHHHH
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGE--IADKLGLKFDVESESGRARILYDRL 250 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~~l~~~L 250 (610)
..+-+|+|.|.+|+||||+|+.+............+.-++...-......+.. +...-|. +..-+.+.+......+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~--Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGF--PESYDMRALLRFLSDV 161 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCC--cccccHHHHHHHHHHH
Confidence 45679999999999999999998886643211123444555443333222221 1111111 2222334555666666
Q ss_pred hCCCe
Q 007268 251 KKEER 255 (610)
Q Consensus 251 ~~~kr 255 (610)
+.++.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 66554
No 282
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.58 E-value=0.053 Score=59.23 Aligned_cols=95 Identities=17% Similarity=0.244 Sum_probs=59.5
Q ss_pred HHHHHhcC--CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC-------
Q 007268 165 EIMDALKN--PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFD------- 235 (610)
Q Consensus 165 ~L~~~L~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------- 235 (610)
.|-+.|.. ....++.|.|++|+|||||+.+++.....+ -..+++++..+. ..++...+ +.++.+..
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~ 325 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGL 325 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCc
Confidence 34444432 345799999999999999999999887543 345677765543 44454443 45554321
Q ss_pred ---------CCChhHHHHHHHHHHhCCCeEEEEEeCCC
Q 007268 236 ---------VESESGRARILYDRLKKEERILVILDNIW 264 (610)
Q Consensus 236 ---------~~~~~~~~~~l~~~L~~~kr~LLVLDdv~ 264 (610)
.....+.+..+.+.+.+.+.-++|+|.+.
T Consensus 326 l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 326 LKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred EEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 11224456666666655556678888774
No 283
>PRK06762 hypothetical protein; Provisional
Probab=95.57 E-value=0.012 Score=54.41 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=22.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+.+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 284
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.56 E-value=0.013 Score=56.45 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=24.6
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.+..+|+|.|.+|+|||||++.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999999876
No 285
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.54 E-value=0.081 Score=54.47 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=29.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEe
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEV 213 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~v 213 (610)
...+.++|..|+|||+||..+++....+ -..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEH
Confidence 3779999999999999999999987654 235666654
No 286
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.54 E-value=0.026 Score=63.09 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=59.8
Q ss_pred CCCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 150 NKDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
+.....++|.++.++.|...+... +.+.|+|++|+||||+|+.+++.... .+++..+|+.- ...+...+++.++..
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHh
Confidence 344567899999988888777654 47999999999999999999987643 34577788655 444677778888776
Q ss_pred hCC
Q 007268 230 LGL 232 (610)
Q Consensus 230 l~~ 232 (610)
+|.
T Consensus 103 ~G~ 105 (637)
T PRK13765 103 KGK 105 (637)
T ss_pred cCH
Confidence 654
No 287
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.54 E-value=0.024 Score=52.90 Aligned_cols=25 Identities=52% Similarity=0.668 Sum_probs=22.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHhcc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.|.|.|.+|+||||+|+.+.+....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999543
No 288
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.05 Score=54.25 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=25.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
.++|.++|++|.|||+|.+.+++....+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4789999999999999999999997663
No 289
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.48 E-value=0.034 Score=57.48 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=41.4
Q ss_pred cCccccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 154 EAFESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
..++|+...+.++.+.+. .....-|.|+|..|+||+++|+.+....... -...+.+++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~--~~pfv~v~c~~ 67 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAA 67 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCcc--CCCeEEEeCCC
Confidence 457888888888777665 2334568899999999999999887543321 12344555554
No 290
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.47 E-value=0.041 Score=59.26 Aligned_cols=85 Identities=29% Similarity=0.342 Sum_probs=53.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCC--ChhHHHHHHHHHHhC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVE--SESGRARILYDRLKK 252 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~L~~ 252 (610)
..++.|.|.+|+|||||+.+++...... -..++|++.... ..++.. -++.++.+.+.. .....+..+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4689999999999999999998876532 346788876543 333332 255565532210 001123455555554
Q ss_pred CCeEEEEEeCCC
Q 007268 253 EERILVILDNIW 264 (610)
Q Consensus 253 ~kr~LLVLDdv~ 264 (610)
.+.-++|+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 566799999975
No 291
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.47 E-value=0.016 Score=56.00 Aligned_cols=26 Identities=35% Similarity=0.666 Sum_probs=22.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
++|+|.|-||+||||++..++.....
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 47899999999999999988877664
No 292
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.07 Score=49.27 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..++.|.|++|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999876
No 293
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.47 E-value=0.024 Score=55.21 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=51.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCC----------------C--
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKF----------------D-- 235 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----------------~-- 235 (610)
...++.|.|.+|+|||+|+.+++.....+. =..++|++...++ .++.+.+. .++.+. .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 457999999999999999999876543220 1367888876543 44444432 443321 0
Q ss_pred ---CCChhHHHHHHHHHHhCCCeEEEEEeCCC
Q 007268 236 ---VESESGRARILYDRLKKEERILVILDNIW 264 (610)
Q Consensus 236 ---~~~~~~~~~~l~~~L~~~kr~LLVLDdv~ 264 (610)
..+.......+.+.+...+.-.+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 12333445555555554455799999864
No 294
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.46 E-value=0.012 Score=45.45 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+|.|.|.+|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 295
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.46 E-value=0.072 Score=57.40 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=49.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC-CCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE-SRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKE 253 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~ 253 (610)
.++++++|+.|+||||++..++.....+.....+..++... .....+-+....+.++.+................+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~-- 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR-- 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc--
Confidence 47999999999999999999998764332222455555443 123344555556666655432211111111222332
Q ss_pred CeEEEEEeCCC
Q 007268 254 ERILVILDNIW 264 (610)
Q Consensus 254 kr~LLVLDdv~ 264 (610)
....+++|..-
T Consensus 334 d~d~VLIDTaG 344 (484)
T PRK06995 334 NKHIVLIDTIG 344 (484)
T ss_pred CCCeEEeCCCC
Confidence 23466777654
No 296
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.46 E-value=0.056 Score=52.02 Aligned_cols=86 Identities=26% Similarity=0.414 Sum_probs=54.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCC-------CCCCCChhHH----
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGL-------KFDVESESGR---- 242 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~~---- 242 (610)
...+.|.|.+|+|||+|+.++.+... -+.++++.+++. ....++.+++...-.. ....++....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 35789999999999999999999875 345688888755 4556666666443111 1111121111
Q ss_pred --HHHHHHHHh-CCCeEEEEEeCCC
Q 007268 243 --ARILYDRLK-KEERILVILDNIW 264 (610)
Q Consensus 243 --~~~l~~~L~-~~kr~LLVLDdv~ 264 (610)
.-.+.+++. +++..|+++||+-
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred ccchhhhHHHhhcCCceeehhhhhH
Confidence 122333343 4899999999984
No 297
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.11 Score=58.70 Aligned_cols=59 Identities=24% Similarity=0.233 Sum_probs=36.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCCC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGLK 233 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 233 (610)
.++++++|+.|+||||++..++...........+..++.... ....+.++...+.++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvp 244 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVP 244 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCC
Confidence 479999999999999999999877643211234555554321 12334455555555544
No 298
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.44 E-value=0.064 Score=49.63 Aligned_cols=80 Identities=21% Similarity=0.194 Sum_probs=47.5
Q ss_pred EEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCC-CeE
Q 007268 178 LLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKE-ERI 256 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~-kr~ 256 (610)
+.|.|.+|+|||++|.++.... ...++++.-....+.+ +...|...-...+..-...+....+.+.+.+. +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6789999999999999998651 2356777666666543 44554443222222222223333444444321 234
Q ss_pred EEEEeCC
Q 007268 257 LVILDNI 263 (610)
Q Consensus 257 LLVLDdv 263 (610)
.+++|.+
T Consensus 76 ~VLIDcl 82 (169)
T cd00544 76 VVLIDCL 82 (169)
T ss_pred EEEEEcH
Confidence 7999986
No 299
>PRK14527 adenylate kinase; Provisional
Probab=95.43 E-value=0.061 Score=50.92 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=25.1
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
....+|.|+|++|+||||+|+.++.....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35679999999999999999999887653
No 300
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.41 E-value=0.015 Score=55.86 Aligned_cols=28 Identities=36% Similarity=0.444 Sum_probs=24.6
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+...+|+|+|++|+|||||++.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567999999999999999999998754
No 301
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.36 E-value=0.054 Score=62.02 Aligned_cols=61 Identities=15% Similarity=0.310 Sum_probs=43.1
Q ss_pred CcCccccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 153 YEAFESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
...++|+...+..+.+.+. ......|.|+|..|+|||++|+.+.+..... -...+.+++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~ 437 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAA 437 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEeccc
Confidence 3468899888888766554 2334578999999999999999998765422 22445555554
No 302
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.32 E-value=0.063 Score=57.95 Aligned_cols=87 Identities=25% Similarity=0.260 Sum_probs=53.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCC--ChhHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVE--SESGRARILYDRLK 251 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~L~ 251 (610)
...++.|.|.+|+|||||+.+++...... -..++|++.... ..++.. -+..++...+.. -.......+.+.+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 45789999999999999999998776543 235788876543 333322 234454432110 00112345555555
Q ss_pred CCCeEEEEEeCCCC
Q 007268 252 KEERILVILDNIWE 265 (610)
Q Consensus 252 ~~kr~LLVLDdv~~ 265 (610)
..+.-++|+|.+..
T Consensus 168 ~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 168 EENPQACVIDSIQT 181 (454)
T ss_pred hcCCcEEEEecchh
Confidence 55677899998853
No 303
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.31 E-value=0.14 Score=49.87 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=31.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
...++.|.|.+|+|||+||.+++.....+ -..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 45799999999999999999987654332 357788877543
No 304
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.19 Score=55.26 Aligned_cols=200 Identities=22% Similarity=0.304 Sum_probs=102.2
Q ss_pred CCcCccccHHHHH---HHHHHhcCCC---------ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh
Q 007268 152 DYEAFESRASILN---EIMDALKNPN---------VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV 219 (610)
Q Consensus 152 ~~~~~vGR~~~~~---~L~~~L~~~~---------~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~ 219 (610)
...+.-|.++..+ ++++.|.++. ++=|.++|++|.|||.||+.++....+- | .+.|... +
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~-F 219 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSD-F 219 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchh-h
Confidence 3456678776555 4566666442 4668899999999999999999887764 2 1111110 0
Q ss_pred HHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc------------c----chhhcCCCCC--CCC
Q 007268 220 RKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL------------D----LLDVGIPHGD--DHK 281 (610)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~------------~----~~~l~~~l~~--~~~ 281 (610)
. ++.-.. ....++.+...-++.-+|++++|.++... . +..+...... .+.
T Consensus 220 V----emfVGv--------GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 220 V----EMFVGV--------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred h----hhhcCC--------CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 0 011001 11234455555544568999999886431 1 2222222111 123
Q ss_pred CeEEEEEecccccc-cccC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHH--HHHH--
Q 007268 282 GCKVLFTARSEEVL-SGEM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVS--IVTV-- 353 (610)
Q Consensus 282 gs~IivTTR~~~va-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa--i~~i-- 353 (610)
|.-|+..|....|. .... .-.+.+.++.-+-..-.+.++-++......+.. + .+.|++.+-|.-.| .+.+
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V-d-l~~iAr~tpGfsGAdL~nl~NE 365 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDV-D-LKKIARGTPGFSGADLANLLNE 365 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcC-C-HHHHhhhCCCcccchHhhhHHH
Confidence 44444445555554 1111 223456666666666666776555422222111 1 12377777776443 1222
Q ss_pred HHHHh---cC---CHHHHHHHHHHhc
Q 007268 354 ARALR---NK---GIREWKDALEQLR 373 (610)
Q Consensus 354 ~~~L~---~~---~~~~w~~~l~~l~ 373 (610)
|+++. ++ +..+.....+++-
T Consensus 366 Aal~aar~n~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 366 AALLAARRNKKEITMRDIEEAIDRVI 391 (596)
T ss_pred HHHHHHHhcCeeEeccchHHHHHHHh
Confidence 34443 22 4455555566543
No 305
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.28 E-value=0.12 Score=51.86 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=53.9
Q ss_pred HHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCC-------CC
Q 007268 166 IMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDV-------ES 238 (610)
Q Consensus 166 L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~ 238 (610)
..+++...+..+|.|.|.+|+|||||+..+.+..... . .++.+ .....+..+ ...+...+.+.-. ..
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~-~~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl 168 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--V-PCAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHL 168 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--C-CEEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcC
Confidence 4455556788999999999999999999999987643 2 22222 222222222 2223444433111 11
Q ss_pred hhHHHHHHHHHHhCCCeEEEEEeCCCC
Q 007268 239 ESGRARILYDRLKKEERILVILDNIWE 265 (610)
Q Consensus 239 ~~~~~~~l~~~L~~~kr~LLVLDdv~~ 265 (610)
....+......|.....-+||++++-+
T Consensus 169 ~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 169 DAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred cHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 223344445555433446788999864
No 306
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.23 E-value=0.018 Score=53.46 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=24.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
....|.|+|++|+||||+|+.++....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999999874
No 307
>PRK03839 putative kinase; Provisional
Probab=95.21 E-value=0.017 Score=54.16 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=22.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.|.|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999875
No 308
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.19 E-value=0.11 Score=47.80 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=63.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCe-EE-EEEeCCCCChHHHHHHHH---HhhCCC--CCCCCh-------h
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQ-VV-LSEVSESRDVRKIQGEIA---DKLGLK--FDVESE-------S 240 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~-~~-wv~vs~~~~~~~~~~~i~---~~l~~~--~~~~~~-------~ 240 (610)
...|-|++..|.||||.|...+.+..... +.. ++ |+.-.........+..+. .+++.. ....+. .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-KKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 35788888899999999999988876542 222 11 333222233333443320 001111 111111 1
Q ss_pred HHHHHHHHHHhCCCeEEEEEeCCCCcc-----cchhhcCCCCCCCCCeEEEEEecccc
Q 007268 241 GRARILYDRLKKEERILVILDNIWENL-----DLLDVGIPHGDDHKGCKVLFTARSEE 293 (610)
Q Consensus 241 ~~~~~l~~~L~~~kr~LLVLDdv~~~~-----~~~~l~~~l~~~~~gs~IivTTR~~~ 293 (610)
+......+.+..+.-=|||||.+-..- ..+.+...+.....+.-||+|-|+..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 123344555555555699999985331 22333333333445668999999864
No 309
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.19 E-value=0.039 Score=52.65 Aligned_cols=51 Identities=25% Similarity=0.406 Sum_probs=37.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFD 235 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 235 (610)
.|+|+|-||+||||+|..++.....++. ..+.-|+...++++. .+||...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~-~~VLvVDaDpd~nL~-------~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGG-YNVLVVDADPDSNLP-------EALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCChH-------HhcCCCCC
Confidence 5899999999999999997777665543 346667777666543 45666654
No 310
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.18 E-value=0.026 Score=57.47 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=32.7
Q ss_pred CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 172 NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 172 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
+.+.+++++.|-||+||||+|..++.-.... =..+.-++.....
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~--G~rVLliD~D~q~ 46 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEM--GQRILIVGCDPKA 46 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHC--CCcEEEEEccCCC
Confidence 4567999999999999999999988877654 2245555555444
No 311
>PF13245 AAA_19: Part of AAA domain
Probab=95.14 E-value=0.049 Score=43.01 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=18.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
+.+++.|.|++|.|||+++......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568889999999999555554443
No 312
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.13 E-value=0.019 Score=54.04 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+.++|.|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 313
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.11 E-value=0.18 Score=50.14 Aligned_cols=93 Identities=19% Similarity=0.242 Sum_probs=59.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc--cCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCCC-------CCCChhH--
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE--SDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLKF-------DVESESG-- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~-- 241 (610)
+-..++|.|-+|+|||+|+..+.++.. .+..-+.++++-+++.. ...++..++...=..+. ..++...
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 345789999999999999999888764 12224678888887665 45666666655422211 1111111
Q ss_pred ----HHHHHHHHHh-C-CCeEEEEEeCCCCc
Q 007268 242 ----RARILYDRLK-K-EERILVILDNIWEN 266 (610)
Q Consensus 242 ----~~~~l~~~L~-~-~kr~LLVLDdv~~~ 266 (610)
....+.+++. + ++++|+++||+-..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1234555654 2 68999999998543
No 314
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.10 E-value=0.15 Score=62.43 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=24.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.++=|.++|++|+|||.||++++....+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 3567889999999999999999998654
No 315
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.08 E-value=0.024 Score=57.07 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=30.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
++|+|.|-||+||||++..++.-....+ + .+.-|+.....+
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G-~-rVLlID~Dpq~~ 42 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMG-K-KVMVVGCDPKAD 42 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCC-C-cEEEEecCCccc
Confidence 5788889999999999999888776531 2 455566655443
No 316
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.06 E-value=0.024 Score=57.04 Aligned_cols=39 Identities=26% Similarity=0.472 Sum_probs=27.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
++|+|+|-||+||||++..++.-.... =..+.-++....
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~--G~rVllvD~Dpq 40 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTM--GNKILLVGCDPK 40 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhh--CCCeEEEecccc
Confidence 578888999999999999988877643 123444544433
No 317
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.03 E-value=0.058 Score=60.38 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=53.4
Q ss_pred CCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhC
Q 007268 152 DYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLG 231 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (610)
-...++|.++.++.+...+... +.+.++|++|+|||++|+.+++..... .|...+++. ....+..++++.++..++
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~-n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYP-NPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEe-CCCCCchHHHHHHHHhhc
Confidence 3467889998888877777654 366699999999999999999877543 333344332 233345556777777665
Q ss_pred C
Q 007268 232 L 232 (610)
Q Consensus 232 ~ 232 (610)
.
T Consensus 92 ~ 92 (608)
T TIGR00764 92 R 92 (608)
T ss_pred h
Confidence 4
No 318
>PRK04040 adenylate kinase; Provisional
Probab=95.03 E-value=0.022 Score=53.74 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=23.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+|+|+|++|+||||+++.+.....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998874
No 319
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.03 E-value=0.031 Score=55.75 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=42.1
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCC
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLK 233 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (610)
+..+++.|+|.+|+|||+++.++....... ...++||+....+ .++.+...+ ++..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~--~~l~~~~~~-~g~d 76 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESP--EELLENARS-FGWD 76 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCH--HHHHHHHHH-cCCC
Confidence 456899999999999999999999887765 7889999887653 334333333 5443
No 320
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.02 E-value=0.017 Score=49.02 Aligned_cols=24 Identities=50% Similarity=0.767 Sum_probs=20.8
Q ss_pred EEEEecCCchHHHHHHHHHHHhcc
Q 007268 178 LLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
|-|+|.+|+|||+||..++.....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999998887654
No 321
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.02 E-value=0.041 Score=53.43 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=22.8
Q ss_pred HHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 164 NEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 164 ~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+.+...+..+. +..|+|++|.|||+++..+....
T Consensus 8 ~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 8 EAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 34444443332 78999999999998887777766
No 322
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.00 E-value=0.11 Score=53.42 Aligned_cols=38 Identities=29% Similarity=0.416 Sum_probs=29.8
Q ss_pred HHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 165 EIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 165 ~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
+|.+.+. .++..+|+|.|.+|+|||||+..+.......
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4444443 3567899999999999999999988887654
No 323
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.97 E-value=0.022 Score=57.06 Aligned_cols=86 Identities=20% Similarity=0.320 Sum_probs=46.9
Q ss_pred HHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh-hCCCCCC-CChhHH
Q 007268 165 EIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK-LGLKFDV-ESESGR 242 (610)
Q Consensus 165 ~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~-l~~~~~~-~~~~~~ 242 (610)
.+++.+... .+-+.++|+.|+|||++++.+........ | ...-++.+...+...+ +.+++. +...... -..
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~~~~~gP--- 96 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQL-QKIIESKLEKRRGRVYGP--- 96 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHH-HHCCCTTECECTTEEEEE---
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHH-HHHHhhcEEcCCCCCCCC---
Confidence 445544444 35679999999999999999887644321 1 2344555554444333 222221 1110000 000
Q ss_pred HHHHHHHHhCCCeEEEEEeCCCC
Q 007268 243 ARILYDRLKKEERILVILDNIWE 265 (610)
Q Consensus 243 ~~~l~~~L~~~kr~LLVLDdv~~ 265 (610)
..+|+.++.+||+.-
T Consensus 97 --------~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 97 --------PGGKKLVLFIDDLNM 111 (272)
T ss_dssp --------ESSSEEEEEEETTT-
T ss_pred --------CCCcEEEEEecccCC
Confidence 126889999999963
No 324
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.96 E-value=0.026 Score=54.48 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 489999999999999999998743
No 325
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.95 E-value=0.023 Score=53.45 Aligned_cols=27 Identities=37% Similarity=0.486 Sum_probs=24.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
..+|+|-||-|+||||||+.++++...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 468999999999999999999999874
No 326
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.95 E-value=0.036 Score=60.53 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=41.5
Q ss_pred cCccccHHHHHHHHHHhc-----CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEE
Q 007268 154 EAFESRASILNEIMDALK-----NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSE 212 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~-----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~ 212 (610)
.++.--.+.++++..||. ....+++.+.|++|+||||.++.+++... |+.+=|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 344444566778888886 23357999999999999999999998875 66666763
No 327
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.94 E-value=0.096 Score=53.46 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=25.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
....+|+|.|++|+|||||+..+.......
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999998876543
No 328
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.92 E-value=0.15 Score=54.63 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=59.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCC-------CCCCChhH----
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLK-------FDVESESG---- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 241 (610)
+...++|.|.+|+|||+|+.++++....+ +-+.++++-+++.. ...++..++...-... ....+...
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 44679999999999999999998887654 46777787776554 4566666665432221 11111111
Q ss_pred --HHHHHHHHHh-C-CCeEEEEEeCCCC
Q 007268 242 --RARILYDRLK-K-EERILVILDNIWE 265 (610)
Q Consensus 242 --~~~~l~~~L~-~-~kr~LLVLDdv~~ 265 (610)
....+.+++. + ++++||++|++-.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1234555554 2 7999999999943
No 329
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.92 E-value=0.08 Score=49.44 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+++|.|..|+|||||++.++....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999987654
No 330
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.91 E-value=0.026 Score=53.77 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=25.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
++.+|+|.|.+|+||||+|+.++......
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 45799999999999999999999987743
No 331
>PRK00625 shikimate kinase; Provisional
Probab=94.87 E-value=0.023 Score=52.84 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=21.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.|.|+|++|+||||+++.+++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998865
No 332
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.86 E-value=0.03 Score=53.28 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEE
Q 007268 161 SILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLS 211 (610)
Q Consensus 161 ~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv 211 (610)
.+-...++.|. ...++.+.|++|+|||.||...+-+.-....|+.++++
T Consensus 7 ~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 7 EEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp HHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred HHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 33444555555 44699999999999999999998776555778888876
No 333
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.86 E-value=0.14 Score=50.36 Aligned_cols=87 Identities=18% Similarity=0.168 Sum_probs=48.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccCCC----------CCeEEEEEeCCCC-ChHHHHHHHHHhhCCCCC----------
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESDKL----------FDQVVLSEVSESR-DVRKIQGEIADKLGLKFD---------- 235 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~~~----------f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~---------- 235 (610)
+..|+|++|+|||+||..++........ -..+++++...+. .+.+-+..+...++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 5678999999999999999876543211 1235566655443 233333444443321100
Q ss_pred -------C---CChhHHHHHHHHHHhCCCeEEEEEeCC
Q 007268 236 -------V---ESESGRARILYDRLKKEERILVILDNI 263 (610)
Q Consensus 236 -------~---~~~~~~~~~l~~~L~~~kr~LLVLDdv 263 (610)
. ......+..+.+.+...+.-+||+|.+
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl 120 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPL 120 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECCh
Confidence 0 012234455555554346779999965
No 334
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.84 E-value=0.035 Score=52.16 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=30.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVS 214 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs 214 (610)
.+++.|+|+.|+|||||+..+....... |..+++.+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeeccc
Confidence 4789999999999999999999987644 7555555544
No 335
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.83 E-value=0.079 Score=58.35 Aligned_cols=62 Identities=13% Similarity=0.217 Sum_probs=45.4
Q ss_pred CcCccccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 153 YEAFESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
...++|+...+.++.+.+. .....-|.|+|..|+|||++|+.+.+..... -...+.|++...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccC
Confidence 4568899888888877765 3345678999999999999999998875432 224455666554
No 336
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.83 E-value=0.077 Score=53.03 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=21.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
+.|.|+|.+|+||||+|+++......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 47899999999999999999988765
No 337
>PRK13768 GTPase; Provisional
Probab=94.80 E-value=0.14 Score=50.75 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=27.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEe
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEV 213 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~v 213 (610)
.++.|.|++|+||||++..+....... -..++.++.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~--g~~v~~i~~ 38 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ--GYDVAIVNL 38 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc--CCceEEEEC
Confidence 578999999999999999988777643 224445444
No 338
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.2 Score=48.22 Aligned_cols=74 Identities=27% Similarity=0.339 Sum_probs=45.3
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
+.++=|.++|++|.|||.||+.+++..... | +.+-. .++.+ +.||.. ...+..+..--+.
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~--f-----irvvg----sefvq---kylgeg------prmvrdvfrlake 246 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAA--F-----IRVVG----SEFVQ---KYLGEG------PRMVRDVFRLAKE 246 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchh--e-----eeecc----HHHHH---HHhccC------cHHHHHHHHHHhc
Confidence 456788999999999999999999876543 3 22111 11111 222221 1234444444445
Q ss_pred CCeEEEEEeCCCCc
Q 007268 253 EERILVILDNIWEN 266 (610)
Q Consensus 253 ~kr~LLVLDdv~~~ 266 (610)
+.+-++.+|.++..
T Consensus 247 napsiifideidai 260 (408)
T KOG0727|consen 247 NAPSIIFIDEIDAI 260 (408)
T ss_pred cCCcEEEeehhhhH
Confidence 67888889988643
No 339
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.79 E-value=0.22 Score=49.90 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=37.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
..++.|.|.+|+|||+++.+++...... +-..++|+++... ..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEcccC--HHHHHHHHHHH
Confidence 4588999999999999999998776432 1246888887653 45555555443
No 340
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.79 E-value=0.035 Score=56.03 Aligned_cols=42 Identities=26% Similarity=0.409 Sum_probs=31.6
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV 219 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~ 219 (610)
++|+|+|-||+||||+|..++...... -..+.-|+.....+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~--G~rVLliD~Dpq~n~ 43 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAES--GKKVLVVGCDPKADC 43 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhC--CCEEEEEeeCCcccc
Confidence 578899999999999999998887654 224666666655443
No 341
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.78 E-value=0.027 Score=52.56 Aligned_cols=25 Identities=16% Similarity=0.424 Sum_probs=22.6
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988754
No 342
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.77 E-value=0.021 Score=49.56 Aligned_cols=25 Identities=48% Similarity=0.688 Sum_probs=18.4
Q ss_pred EEEEecCCchHHHHHHHHHHHhccC
Q 007268 178 LLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
|.|+|.+|+|||++|+.++......
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 6799999999999999999987654
No 343
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.75 E-value=0.031 Score=50.01 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=28.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
++|.|+|..|+|||||++.+.+....+ .+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 489999999999999999999998754 355555666554
No 344
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.75 E-value=0.033 Score=51.92 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
...+|.|.|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999988754
No 345
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.73 E-value=0.073 Score=55.14 Aligned_cols=64 Identities=22% Similarity=0.246 Sum_probs=48.0
Q ss_pred CccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHH
Q 007268 155 AFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGE 225 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (610)
.++|+++.+..+...+..+ +-+.+.|++|+|||+||+.++..... ..++|.+.......++.-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGL-----PFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecCCCCCHHHhcCc
Confidence 3778888888877666544 46889999999999999999998763 3466667766666655443
No 346
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.73 E-value=0.11 Score=50.81 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...++|+|+.|.|||||.+.+..-.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3789999999999999999998743
No 347
>PHA02774 E1; Provisional
Probab=94.71 E-value=0.078 Score=57.67 Aligned_cols=50 Identities=24% Similarity=0.372 Sum_probs=36.5
Q ss_pred HHHHHHHHhcC-CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 162 ILNEIMDALKN-PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 162 ~~~~L~~~L~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
.+..|..+|.. ++...+.|+|++|+|||.+|..+.+-.. ...+.|++...
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~s 470 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSKS 470 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECcc
Confidence 45666666653 3346899999999999999999998764 23456676543
No 348
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.70 E-value=0.11 Score=48.73 Aligned_cols=117 Identities=21% Similarity=0.214 Sum_probs=60.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC--CCChHHH------HHHHHHhhCCCCC------CCCh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE--SRDVRKI------QGEIADKLGLKFD------VESE 239 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~--~~~~~~~------~~~i~~~l~~~~~------~~~~ 239 (610)
+..+++|.|..|.|||||++.++..... ..+.+++.-.+ ..+.... ..++++.++.... .-+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3468999999999999999999876432 34444442111 1112111 1124555554311 1111
Q ss_pred hH-HHHHHHHHHhCCCeEEEEEeCCCCccc---chhhcCCCCCC-CC-CeEEEEEeccccc
Q 007268 240 SG-RARILYDRLKKEERILVILDNIWENLD---LLDVGIPHGDD-HK-GCKVLFTARSEEV 294 (610)
Q Consensus 240 ~~-~~~~l~~~L~~~kr~LLVLDdv~~~~~---~~~l~~~l~~~-~~-gs~IivTTR~~~v 294 (610)
.+ ..-.+...+. ..+-++++|+.-..-+ ...+...+... .. +..||++|.+...
T Consensus 101 G~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 101 GERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 11 1223444454 3688999998754322 12221111111 11 5568888877554
No 349
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.70 E-value=0.088 Score=55.29 Aligned_cols=48 Identities=25% Similarity=0.406 Sum_probs=35.7
Q ss_pred cCccccHHHHHHHHHHhcC--------------CCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 154 EAFESRASILNEIMDALKN--------------PNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~--------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
..++|.++.+..+...+.. ..++.|.++|++|+|||++|+.++.....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467877777766544431 12468999999999999999999998754
No 350
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.68 E-value=0.24 Score=52.77 Aligned_cols=88 Identities=19% Similarity=0.285 Sum_probs=54.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCC-------CCCCChhH----
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLK-------FDVESESG---- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 241 (610)
+...++|.|..|+|||||++.+++... .+.++++-++... ...++..+.+..-+.. ..+.+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 456889999999999999999887654 3455566666544 3445555554433322 11111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCCC
Q 007268 242 --RARILYDRLK-KEERILVILDNIWE 265 (610)
Q Consensus 242 --~~~~l~~~L~-~~kr~LLVLDdv~~ 265 (610)
....+.+++. +++.+||++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1223455553 48999999999853
No 351
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.67 E-value=0.038 Score=53.73 Aligned_cols=29 Identities=28% Similarity=0.539 Sum_probs=25.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
++.+|.++||+|+||||..+.++.+...+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 46688899999999999999999887765
No 352
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.67 E-value=0.075 Score=56.45 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=34.4
Q ss_pred CccccHHHHHHHHHHhc-------CC---------CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 155 AFESRASILNEIMDALK-------NP---------NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~-------~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.++|.+..++.|...+. .. ....+.++|++|+|||+||+.++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 47898888877654431 10 235689999999999999999987654
No 353
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.67 E-value=0.056 Score=47.61 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=24.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
...+|.+.|.-|+||||+++.+++....
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3468999999999999999999998654
No 354
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.67 E-value=0.17 Score=53.76 Aligned_cols=88 Identities=19% Similarity=0.277 Sum_probs=54.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCC-------CCCCChhH----
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLK-------FDVESESG---- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 241 (610)
....++|.|..|+|||||++.++.... .+.++..-+++.. ...++..+++..-+.. ..+++...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 446799999999999999999886432 3566666666554 3455666655443222 11111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCCC
Q 007268 242 --RARILYDRLK-KEERILVILDNIWE 265 (610)
Q Consensus 242 --~~~~l~~~L~-~~kr~LLVLDdv~~ 265 (610)
....+.+++. +++++||++||+-.
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1223455553 48999999999854
No 355
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.66 E-value=0.2 Score=53.48 Aligned_cols=91 Identities=16% Similarity=0.273 Sum_probs=59.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCC-------CCCCChhH----
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLK-------FDVESESG---- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 241 (610)
+...++|.|.+|+|||+|+.++....... +-+.++++-++... ...++..++...-... ....+...
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 44679999999999999999998876532 34678888887655 4556666665432221 11111111
Q ss_pred --HHHHHHHHHh--CCCeEEEEEeCCCC
Q 007268 242 --RARILYDRLK--KEERILVILDNIWE 265 (610)
Q Consensus 242 --~~~~l~~~L~--~~kr~LLVLDdv~~ 265 (610)
....+.+++. +++++||++||+-.
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 1334566665 47999999999854
No 356
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.65 E-value=0.03 Score=64.35 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=22.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
+.++++|+|+.|.||||+.+.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 4579999999999999999998765
No 357
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.65 E-value=0.063 Score=54.85 Aligned_cols=49 Identities=24% Similarity=0.410 Sum_probs=38.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGE 225 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (610)
.+++.+.|.||+||||+|...+-.....+ ..++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999887776653 44777887777776666554
No 358
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.63 E-value=0.043 Score=50.48 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=57.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC--ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR--DVRKIQGEIADKLGLKFDVESESGRARILYDRLK 251 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~ 251 (610)
...+++|.|..|.|||||.+.++.... +..+.+++.-.... +..+.. ...++.-.+-..-....-.+...+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDAR---RAGIAMVYQLSVGERQMVEIARALA 98 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHH---hcCeEEEEecCHHHHHHHHHHHHHh
Confidence 346899999999999999999986643 24455555322111 111111 1112111111111112223444444
Q ss_pred CCCeEEEEEeCCCCccc---chhhcCCCCC-CCCCeEEEEEeccccc
Q 007268 252 KEERILVILDNIWENLD---LLDVGIPHGD-DHKGCKVLFTARSEEV 294 (610)
Q Consensus 252 ~~kr~LLVLDdv~~~~~---~~~l~~~l~~-~~~gs~IivTTR~~~v 294 (610)
.++-++++|+.-..-+ ...+...+.. ...|..||++|.+...
T Consensus 99 -~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 99 -RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred -cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 3678999998754322 1111111111 1235568888887653
No 359
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.62 E-value=0.076 Score=45.99 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=31.6
Q ss_pred CccccHHHHH----HHHHHhc---CCCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 155 AFESRASILN----EIMDALK---NPNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 155 ~~vGR~~~~~----~L~~~L~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.++|..-..+ .|...+. .+++-|++.+|.+|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3455544444 4444444 3456788999999999999999998873
No 360
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.58 E-value=1.2 Score=44.89 Aligned_cols=151 Identities=9% Similarity=0.018 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCCc-eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCC-----C
Q 007268 161 SILNEIMDALKNPNV-NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLK-----F 234 (610)
Q Consensus 161 ~~~~~L~~~L~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~ 234 (610)
..++.+...+..++. ....++| |+||+++|..++...--.+..+. .+...-...+.+...-..+ +
T Consensus 9 ~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~-------~~Cg~C~~C~~i~~~~HPD~~~i~p 79 (290)
T PRK07276 9 KVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGV-------LPCGHCRSCRLIEQGEFSDVTVIEP 79 (290)
T ss_pred HHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCeeeecC
Confidence 345566666665554 5667777 58999999999876532211100 0000000111111100000 0
Q ss_pred CC-CChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEecc-cccccccCCccceec
Q 007268 235 DV-ESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARS-EEVLSGEMESRKNFP 306 (610)
Q Consensus 235 ~~-~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~va~~~~~~~~~~~ 306 (610)
.+ .-..+.+..+.+.+. .+++-++|+|+++.. ...+.+...+-.-..++.+|++|.+ ..+.+...+....+.
T Consensus 80 ~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~ 159 (290)
T PRK07276 80 QGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFH 159 (290)
T ss_pred CCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeee
Confidence 00 011233334444432 245679999999865 3455554444333445556666654 445544455567788
Q ss_pred CCCCCHHHHHHHHHH
Q 007268 307 VGFLKEEEAWSLFKK 321 (610)
Q Consensus 307 l~~L~~~ea~~Lf~~ 321 (610)
+.+ +.++..+.+..
T Consensus 160 f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 160 FPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCC-cHHHHHHHHHH
Confidence 876 66666666653
No 361
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.57 E-value=0.16 Score=55.46 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=53.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC------------------
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFD------------------ 235 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------------ 235 (610)
..+++.|.|.+|+|||+||.+++.....+ .=..++||+..+ +..++.+. +..++.+..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE--~~~~l~~~-~~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEE--SPQDIIKN-ARSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEec--CHHHHHHH-HHHcCCCHHHHhhcCceEEEecCchhc
Confidence 45899999999999999999997654322 014678888764 33444333 333333211
Q ss_pred ------CCChhHHHHHHHHHHhCCCeEEEEEeCC
Q 007268 236 ------VESESGRARILYDRLKKEERILVILDNI 263 (610)
Q Consensus 236 ------~~~~~~~~~~l~~~L~~~kr~LLVLDdv 263 (610)
..+.......+...+..+++-.+|+|.+
T Consensus 96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred cccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 0122344556666666666778999954
No 362
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.57 E-value=0.038 Score=53.81 Aligned_cols=24 Identities=29% Similarity=0.688 Sum_probs=21.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.|.|.|++|+||||+|+.+++...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 363
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.57 E-value=0.053 Score=55.57 Aligned_cols=53 Identities=28% Similarity=0.397 Sum_probs=37.9
Q ss_pred CcCccccHHHHHH---HHHHhcCCC--ceEEEEEecCCchHHHHHHHHHHHhccCCCC
Q 007268 153 YEAFESRASILNE---IMDALKNPN--VNMLLIYGMGGIGKTTLAKKVARKAESDKLF 205 (610)
Q Consensus 153 ~~~~vGR~~~~~~---L~~~L~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f 205 (610)
..++||..+..+. ++++..+.+ .+.+.|.|++|.|||+||..+++....+-+|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 4689998776554 455555544 5899999999999999999999998866444
No 364
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.56 E-value=0.14 Score=52.15 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=43.1
Q ss_pred cCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHH
Q 007268 154 EAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRK 221 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (610)
+.++=..+....++.++..+ +.|.|.|++|+||||+|+.++...... .+.|.++...+..+
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~D 105 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRID 105 (327)
T ss_pred CCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhh
Confidence 45555666667777777543 469999999999999999999987632 33555555554433
No 365
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.56 E-value=0.03 Score=52.31 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+++|.|++|+|||||++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 366
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.55 E-value=0.2 Score=55.31 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=54.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCC----------------CCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKF----------------DVE 237 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----------------~~~ 237 (610)
...++.|.|.+|+|||+||.+++...... -..++|++.... ..++.+.+ ..++.+. ...
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 346 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESY 346 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccC
Confidence 35788999999999999999998776543 457888877654 44444433 4444321 111
Q ss_pred ChhHHHHHHHHHHhCCCeEEEEEeCCC
Q 007268 238 SESGRARILYDRLKKEERILVILDNIW 264 (610)
Q Consensus 238 ~~~~~~~~l~~~L~~~kr~LLVLDdv~ 264 (610)
...+.+..+...+...+.-++|+|.+.
T Consensus 347 ~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 347 GLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 123344455555544455578888874
No 367
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.55 E-value=0.059 Score=54.99 Aligned_cols=45 Identities=24% Similarity=0.436 Sum_probs=32.4
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKI 222 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~ 222 (610)
+++.+.|-||+||||+|...+-....+. ..+.-++.....++.++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHH
Confidence 6899999999999999998887776542 34666666555544443
No 368
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.55 E-value=0.088 Score=55.31 Aligned_cols=99 Identities=21% Similarity=0.314 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHH--HHHHHHhhCCCCCCCCh
Q 007268 162 ILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKI--QGEIADKLGLKFDVESE 239 (610)
Q Consensus 162 ~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~--~~~i~~~l~~~~~~~~~ 239 (610)
.++.+++.+.......+.|.|.||+|||+|.+.+.+..+.. - ..+-+.++.......+ -..+-..++++......
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~--~-~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~ 85 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR--G-KKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEK 85 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc--c-ceEEEecchHHHHHhccCCcchHHhcCcccccccc
Confidence 34555666665667889999999999999999999887653 1 2233333332222111 12233334443322211
Q ss_pred h----HHHHHHHHHHhCCCeEEEEEeCCCC
Q 007268 240 S----GRARILYDRLKKEERILVILDNIWE 265 (610)
Q Consensus 240 ~----~~~~~l~~~L~~~kr~LLVLDdv~~ 265 (610)
. .....+.+.+. +--+||+|.+.-
T Consensus 86 ~~~~~~~~~~~~~~l~--~~~~lIiDEism 113 (364)
T PF05970_consen 86 SQCKISKNSRLRERLR--KADVLIIDEISM 113 (364)
T ss_pred ccccccccchhhhhhh--hheeeecccccc
Confidence 1 11223344443 335899999863
No 369
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=94.53 E-value=0.041 Score=55.42 Aligned_cols=43 Identities=28% Similarity=0.371 Sum_probs=30.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV 219 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~ 219 (610)
++|+|.|-||+||||+|..++.....+..+ .+.-|+.....+.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~-rvLliD~Dpq~~~ 45 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDK-KVFIHGCDPKADS 45 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCC-eEEEeccCcCcCh
Confidence 688888999999999999988877642112 3566666655544
No 370
>PRK14529 adenylate kinase; Provisional
Probab=94.49 E-value=0.15 Score=49.40 Aligned_cols=84 Identities=21% Similarity=0.314 Sum_probs=47.4
Q ss_pred EEEEecCCchHHHHHHHHHHHhccCCCCC-e-EEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCe
Q 007268 178 LLIYGMGGIGKTTLAKKVARKAESDKLFD-Q-VVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEER 255 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~~~~~~f~-~-~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr 255 (610)
|.|.|++|+||||+|+.++...... +.+ + .+.-.+..........+.++..- ...++.-....+.+++.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G----~lvpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRG----DLVPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhcc----CcchHHHHHHHHHHHHhccCC
Confidence 7889999999999999999887643 222 1 11112222223333344444321 122333345556666654224
Q ss_pred EEEEEeCCCCc
Q 007268 256 ILVILDNIWEN 266 (610)
Q Consensus 256 ~LLVLDdv~~~ 266 (610)
.=+|||+.-..
T Consensus 78 ~g~iLDGfPRt 88 (223)
T PRK14529 78 NGWLLDGFPRN 88 (223)
T ss_pred CcEEEeCCCCC
Confidence 55899998543
No 371
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.48 E-value=0.027 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.702 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 372
>PRK06217 hypothetical protein; Validated
Probab=94.48 E-value=0.03 Score=52.66 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=26.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccCCCC--CeEEEE
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESDKLF--DQVVLS 211 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f--~~~~wv 211 (610)
.|.|.|.+|+||||+|+.+....... ++ |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 58999999999999999999887532 23 345553
No 373
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.46 E-value=0.08 Score=53.57 Aligned_cols=55 Identities=27% Similarity=0.297 Sum_probs=42.7
Q ss_pred CCcCccccHHHHHH---HHHHhcCC--CceEEEEEecCCchHHHHHHHHHHHhccCCCCC
Q 007268 152 DYEAFESRASILNE---IMDALKNP--NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFD 206 (610)
Q Consensus 152 ~~~~~vGR~~~~~~---L~~~L~~~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~ 206 (610)
...+|||..+..+. ++++..++ ..+.|.|+|++|.|||+||..+.+.....-+|.
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 34689998765543 45555543 358899999999999999999999998776774
No 374
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.46 E-value=0.061 Score=55.51 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=39.8
Q ss_pred CcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 153 YEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...++|.++.+..|+-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34678999999888777777777778899999999999999998765
No 375
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.46 E-value=0.19 Score=46.41 Aligned_cols=27 Identities=33% Similarity=0.381 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+++|+|..|.|||||++.+.....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999987654
No 376
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.43 E-value=0.03 Score=50.22 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=21.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+|.|.|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 377
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.42 E-value=0.11 Score=51.83 Aligned_cols=58 Identities=24% Similarity=0.412 Sum_probs=39.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHhcc-CCCC-------CeEEEEEeCCC-CChHHHHHHHHHhhCCCC
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAES-DKLF-------DQVVLSEVSES-RDVRKIQGEIADKLGLKF 234 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~-~~~f-------~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~ 234 (610)
++.|+|.||+|||||+...+-.... ++.| ..+++|++... .++.+=++.+..++++++
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 4556799999999999887654332 3333 35778877643 355566677788887764
No 378
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.41 E-value=0.28 Score=52.51 Aligned_cols=91 Identities=18% Similarity=0.296 Sum_probs=58.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCC-------CCCCChhH----
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLK-------FDVESESG---- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 241 (610)
....++|.|.+|+|||||+.+++....... -+.++++-+++.. .+.+++.++...-... ....+...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 446799999999999999999887766432 2467777776554 4566777666542221 11111111
Q ss_pred --HHHHHHHHHh--CCCeEEEEEeCCCC
Q 007268 242 --RARILYDRLK--KEERILVILDNIWE 265 (610)
Q Consensus 242 --~~~~l~~~L~--~~kr~LLVLDdv~~ 265 (610)
....+.+++. +++++||++|++-.
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1223555552 58999999999853
No 379
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.41 E-value=0.028 Score=53.59 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 380
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.39 E-value=0.047 Score=50.50 Aligned_cols=29 Identities=34% Similarity=0.387 Sum_probs=25.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
...+++|+|..|+|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999887643
No 381
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.38 E-value=0.34 Score=49.76 Aligned_cols=38 Identities=32% Similarity=0.459 Sum_probs=29.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEe
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEV 213 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~v 213 (610)
+..+++++|++|+||||++..++...... -..+..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEec
Confidence 56899999999999999999999887643 224444544
No 382
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.38 E-value=0.053 Score=55.88 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=38.3
Q ss_pred CcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 153 YEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...++|.++.+..+.-.+...+..-+.+.|.+|+||||+|+.+..-.
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 56788999998887755544455679999999999999999998775
No 383
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.38 E-value=0.19 Score=48.89 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=32.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
...++.|.|.+|+|||++|.+++.....+ -..++|++....
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~ 55 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEER 55 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCC
Confidence 35789999999999999999998765433 346788887663
No 384
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.34 E-value=0.031 Score=52.55 Aligned_cols=23 Identities=43% Similarity=0.479 Sum_probs=21.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 385
>PRK14528 adenylate kinase; Provisional
Probab=94.34 E-value=0.15 Score=48.12 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+.|.|.|++|+||||+|+.++....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999987764
No 386
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.34 E-value=0.045 Score=51.27 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=22.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHhcc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
+|+|.|.+|+||||||..+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988753
No 387
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.28 E-value=0.14 Score=50.45 Aligned_cols=76 Identities=12% Similarity=0.115 Sum_probs=42.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC--hHHHHHHHHHh----hCCCC--CCCChhHHHHHHHH
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD--VRKIQGEIADK----LGLKF--DVESESGRARILYD 248 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~----l~~~~--~~~~~~~~~~~l~~ 248 (610)
+|+|.|.+|+||||+++.+........ ..+..++...-.. -.+.-..+... .+.+. +...+.+.+....+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999999998775431 1234444332222 12222222221 22222 33445556666666
Q ss_pred HHhCCC
Q 007268 249 RLKKEE 254 (610)
Q Consensus 249 ~L~~~k 254 (610)
.|.+++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 666543
No 388
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.28 E-value=0.4 Score=54.54 Aligned_cols=62 Identities=13% Similarity=0.251 Sum_probs=41.3
Q ss_pred CcCccccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 153 YEAFESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
...++|....+.++.+.+. .....-|.|+|..|+||+++|+.+.+..... -...+.|++...
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~--~~pfv~vnc~~~ 387 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERA--AGPYIAVNCQLY 387 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCcc--CCCeEEEECCCC
Confidence 4567888887777766654 1223457899999999999999998764321 123344555443
No 389
>PRK13947 shikimate kinase; Provisional
Probab=94.25 E-value=0.038 Score=51.20 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=22.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHhcc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.|.|+|++|+||||+|+.+++....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999988753
No 390
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.24 E-value=0.065 Score=51.05 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=25.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
++..+|.|+|++|+||||||+.+......
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 56789999999999999999999987643
No 391
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.1 Score=48.38 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=23.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+++|.|+.|.|||||.+.++....
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 346899999999999999999987654
No 392
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.23 E-value=0.22 Score=53.01 Aligned_cols=89 Identities=21% Similarity=0.250 Sum_probs=50.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhh-----CCCC-CCCChhH------
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKL-----GLKF-DVESESG------ 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l-----~~~~-~~~~~~~------ 241 (610)
....++|+|..|+|||||++.+...... ..++++..-....++.++....+... +.-. ..++...
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 3458999999999999999888754432 23455544334445555444443322 1111 1111111
Q ss_pred HHHHHHHHHh-CCCeEEEEEeCCCC
Q 007268 242 RARILYDRLK-KEERILVILDNIWE 265 (610)
Q Consensus 242 ~~~~l~~~L~-~~kr~LLVLDdv~~ 265 (610)
....+.+++. +++.+||++||+-.
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHH
Confidence 1223444443 47999999999853
No 393
>PRK08149 ATP synthase SpaL; Validated
Probab=94.22 E-value=0.25 Score=52.45 Aligned_cols=88 Identities=18% Similarity=0.267 Sum_probs=53.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC-CCChHHHHHHHHHhhCCC-------CCCCChhH----
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE-SRDVRKIQGEIADKLGLK-------FDVESESG---- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 241 (610)
+...++|+|.+|+|||||+..++.... .+.++...+.. ..++.++..+........ ..+.+...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 446899999999999999998887543 33444444443 334556666666543221 11111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCCC
Q 007268 242 --RARILYDRLK-KEERILVILDNIWE 265 (610)
Q Consensus 242 --~~~~l~~~L~-~~kr~LLVLDdv~~ 265 (610)
....+.+++. +++++||++||+-.
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 2233445553 48999999999854
No 394
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=94.22 E-value=0.061 Score=54.74 Aligned_cols=43 Identities=21% Similarity=0.392 Sum_probs=30.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
+.++|+|.|-||+||||++..++......+ + .+.-|+.....+
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g-~-kVLliD~D~q~~ 45 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMG-Q-KILIVGCDPKAD 45 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCC-C-eEEEEecccccc
Confidence 347888889999999999998877766531 2 466665554433
No 395
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.21 E-value=0.064 Score=55.44 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=41.9
Q ss_pred CcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 153 YEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...++|-++.+..|...+.+++..-|.|.|..|+||||+|+.+++-..
T Consensus 16 f~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred HHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999988888888888888999999999999999977654
No 396
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.18 E-value=0.054 Score=52.03 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=27.9
Q ss_pred HHhcCCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 168 DALKNPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 168 ~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+.+...++++|+++|+.|+|||||...+.+...
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 334467899999999999999999999988754
No 397
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.17 E-value=0.17 Score=48.64 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=20.6
Q ss_pred EEEEecCCchHHHHHHHHHHHhc
Q 007268 178 LLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
|.|.|++|+||||+|+.++....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999987654
No 398
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.29 Score=48.17 Aligned_cols=96 Identities=27% Similarity=0.404 Sum_probs=60.7
Q ss_pred cCCCCCcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeC
Q 007268 148 IPNKDYEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVS 214 (610)
Q Consensus 148 ~~~~~~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs 214 (610)
.|...+.+.-|-+..+++|.+... -..++=|.++|.+|.|||-||+.|+|..... |-.+
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlRv------ 250 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLRV------ 250 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhhh------
Confidence 344455667788888888887765 1245678899999999999999999986543 3111
Q ss_pred CCCChHHHHHHHH-HhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCC
Q 007268 215 ESRDVRKIQGEIA-DKLGLKFDVESESGRARILYDRLKKEERILVILDNIW 264 (610)
Q Consensus 215 ~~~~~~~~~~~i~-~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~ 264 (610)
+-.+++ +.+|- -...+.++.+.....-+-++.+|.++
T Consensus 251 -------vGseLiQkylGd------GpklvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 251 -------VGSELIQKYLGD------GPKLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred -------hhHHHHHHHhcc------chHHHHHHHHHHHhcCCceEEeehhh
Confidence 111111 22321 12345555555544567788888775
No 399
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.15 E-value=0.17 Score=50.53 Aligned_cols=77 Identities=22% Similarity=0.401 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHH---HHHHhhCCCCCCCCh
Q 007268 163 LNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQG---EIADKLGLKFDVESE 239 (610)
Q Consensus 163 ~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~---~i~~~l~~~~~~~~~ 239 (610)
+-+|...|..++ +-..++|.||+||+|+++.++.-..- .++-+.+++..+..++.. .++...|.
T Consensus 20 i~ri~RvL~~~~-Gh~LLvG~~GsGr~sl~rLaa~i~~~-----~~~~i~~~~~y~~~~f~~dLk~~~~~ag~------- 86 (268)
T PF12780_consen 20 IARISRVLSQPR-GHALLVGVGGSGRQSLARLAAFICGY-----EVFQIEITKGYSIKDFKEDLKKALQKAGI------- 86 (268)
T ss_dssp HHHHHHHHCSTT-EEEEEECTTTSCHHHHHHHHHHHTTE-----EEE-TTTSTTTHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHcCCC-CCeEEecCCCccHHHHHHHHHHHhcc-----ceEEEEeeCCcCHHHHHHHHHHHHHHHhc-------
Confidence 344555665554 55669999999999999988765432 123334445554444322 22222222
Q ss_pred hHHHHHHHHHHhCCCeEEEEEeCCC
Q 007268 240 SGRARILYDRLKKEERILVILDNIW 264 (610)
Q Consensus 240 ~~~~~~l~~~L~~~kr~LLVLDdv~ 264 (610)
++++..+++.|-+
T Consensus 87 ------------~~~~~vfll~d~q 99 (268)
T PF12780_consen 87 ------------KGKPTVFLLTDSQ 99 (268)
T ss_dssp ------------S-S-EEEEEECCC
T ss_pred ------------cCCCeEEEecCcc
Confidence 3688888888864
No 400
>COG4240 Predicted kinase [General function prediction only]
Probab=94.15 E-value=0.35 Score=46.02 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=52.9
Q ss_pred CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCC-----CCCCCChhHHHHHH
Q 007268 172 NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGL-----KFDVESESGRARIL 246 (610)
Q Consensus 172 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~l 246 (610)
.+++-+++|.|+-|+||||++..+++....+.. ..+...+..+-.-...-...++++... ..++..+......+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 456789999999999999999999999887643 356665555444333333444555321 12333444556667
Q ss_pred HHHHhCCC
Q 007268 247 YDRLKKEE 254 (610)
Q Consensus 247 ~~~L~~~k 254 (610)
.+.+.+++
T Consensus 126 Lnai~~g~ 133 (300)
T COG4240 126 LNAIARGG 133 (300)
T ss_pred HHHHhcCC
Confidence 77776655
No 401
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.11 E-value=0.13 Score=48.68 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=22.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHhcc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
+|+|.|+.|+||||+++.+++....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988753
No 402
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.10 E-value=0.3 Score=48.71 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=51.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
+..+++++|.+|+||||++..+......+ -..+.+++..... ....-+......++.+.........+......+.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~--~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 44799999999999999999988776432 1345566554322 22223334444455443322233333444444442
Q ss_pred -CCeEEEEEeCCC
Q 007268 253 -EERILVILDNIW 264 (610)
Q Consensus 253 -~kr~LLVLDdv~ 264 (610)
.+.=++++|..-
T Consensus 152 ~~~~D~ViIDt~G 164 (270)
T PRK06731 152 EARVDYILIDTAG 164 (270)
T ss_pred cCCCCEEEEECCC
Confidence 245678888774
No 403
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.09 E-value=0.11 Score=51.85 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhH
Q 007268 162 ILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESG 241 (610)
Q Consensus 162 ~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 241 (610)
..+.|..++ .....+|.|.|..|+||||++..+....... -..++.+.-+....... ..++... ......
T Consensus 68 ~~~~l~~~~-~~~~GlilisG~tGSGKTT~l~all~~i~~~--~~~iitiEdp~E~~~~~-----~~q~~v~--~~~~~~ 137 (264)
T cd01129 68 NLEIFRKLL-EKPHGIILVTGPTGSGKTTTLYSALSELNTP--EKNIITVEDPVEYQIPG-----INQVQVN--EKAGLT 137 (264)
T ss_pred HHHHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHhhhCCC--CCeEEEECCCceecCCC-----ceEEEeC--CcCCcC
Confidence 344444444 3345689999999999999999887765321 11233332111111110 0111111 111112
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCCCcccchh
Q 007268 242 RARILYDRLKKEERILVILDNIWENLDLLD 271 (610)
Q Consensus 242 ~~~~l~~~L~~~kr~LLVLDdv~~~~~~~~ 271 (610)
....+...|+ ..+=.|+++++.+.+....
T Consensus 138 ~~~~l~~~lR-~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 138 FARGLRAILR-QDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred HHHHHHHHhc-cCCCEEEeccCCCHHHHHH
Confidence 3334444454 4678999999988765443
No 404
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.08 E-value=0.087 Score=48.10 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=28.0
Q ss_pred hcCCCceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 170 LKNPNVNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 170 L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
+...+..+|-+.|++|+||||+|..+.......
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 334567899999999999999999999987654
No 405
>PRK13949 shikimate kinase; Provisional
Probab=94.08 E-value=0.045 Score=50.68 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=22.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.|.|+|++|+||||+++.++....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998875
No 406
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.04 E-value=0.14 Score=48.47 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=24.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
..|+|.|..|+||||+++.+.+.....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999887653
No 407
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.03 E-value=0.047 Score=52.23 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+|+|+|++|+|||||++.++....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456899999999999999999998753
No 408
>PRK14530 adenylate kinase; Provisional
Probab=94.02 E-value=0.046 Score=52.85 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 409
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.44 Score=48.70 Aligned_cols=29 Identities=41% Similarity=0.642 Sum_probs=25.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
.++-|.++|++|.|||-||+.++.+....
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCC
Confidence 45678999999999999999999987754
No 410
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.00 E-value=0.091 Score=53.73 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=60.6
Q ss_pred cCccccHHHHHHHHHHhc------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC----CC---ChH
Q 007268 154 EAFESRASILNEIMDALK------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE----SR---DVR 220 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~----~~---~~~ 220 (610)
..|+|-++.+++|++.+. +..-+++.++|+.|.||||||..+.+-.+. | .+|.-... .+ =+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~---y--~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE---Y--PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe---E--EEEEecCCccccChhhhCCH
Confidence 478999999999999886 456689999999999999999999888764 3 33332221 11 144
Q ss_pred HHHHHHHHhhCCCCCCCChhHHHHHHHHHH
Q 007268 221 KIQGEIADKLGLKFDVESESGRARILYDRL 250 (610)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L 250 (610)
+.-..+.+.++......-.......+.+..
T Consensus 136 ~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y 165 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELCPWCRKRLLEEY 165 (358)
T ss_pred hHHHHHHHHhCcccCCCcCHHHHHHHHHHh
Confidence 555566667776544333333333333333
No 411
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.99 E-value=0.28 Score=52.57 Aligned_cols=92 Identities=20% Similarity=0.202 Sum_probs=58.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCC--CeEEEEEeCCCC-ChHHHHHHHHHhhCCCC-------CCCChhH--
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLF--DQVVLSEVSESR-DVRKIQGEIADKLGLKF-------DVESESG-- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f--~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~-- 241 (610)
....++|.|..|+|||+|+..+.+.......+ ..++++-+++.. .+.+++..+...=.... ...+...
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 34578999999999999999998876532111 156666666544 45666666654322221 1111111
Q ss_pred ----HHHHHHHHHh--CCCeEEEEEeCCCC
Q 007268 242 ----RARILYDRLK--KEERILVILDNIWE 265 (610)
Q Consensus 242 ----~~~~l~~~L~--~~kr~LLVLDdv~~ 265 (610)
....+.+++. +++++||++||+-.
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 2334666776 58999999999854
No 412
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.98 E-value=0.27 Score=48.80 Aligned_cols=95 Identities=12% Similarity=0.180 Sum_probs=54.6
Q ss_pred CceEEEEEecCCchHHHHH-HHHHHHhccCCCCCeE-EEEEeCCCC-ChHHHHHHHHHhhCCC-------CCCCChhH--
Q 007268 174 NVNMLLIYGMGGIGKTTLA-KKVARKAESDKLFDQV-VLSEVSESR-DVRKIQGEIADKLGLK-------FDVESESG-- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~f~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-- 241 (610)
+-..++|.|.+|+|||+|| ..+.+... -+.+ +++-+++.. ...++.+++...-... ...++...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3457899999999999996 44554422 3433 666666554 4566666665432111 11111111
Q ss_pred ----HHHHHHHHHh-CCCeEEEEEeCCCCc-ccchhh
Q 007268 242 ----RARILYDRLK-KEERILVILDNIWEN-LDLLDV 272 (610)
Q Consensus 242 ----~~~~l~~~L~-~~kr~LLVLDdv~~~-~~~~~l 272 (610)
..-.+.+++. +++.+||++||+-.. ..+.++
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 1223444443 478999999999544 344444
No 413
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.96 E-value=0.04 Score=51.47 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=21.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
++++|+|+.|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999854
No 414
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.95 E-value=0.048 Score=49.41 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.0
Q ss_pred EEEEecCCchHHHHHHHHHHHhc
Q 007268 178 LLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
|.|+|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 415
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.95 E-value=0.049 Score=51.31 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+.++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999998764
No 416
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.94 E-value=0.21 Score=46.19 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=39.6
Q ss_pred cccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHH
Q 007268 157 ESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIAD 228 (610)
Q Consensus 157 vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (610)
+|....+.++++.+. .....-|.|+|..|+||+.+|+.+.+..... -...+-|+++.- +.+.+...+..
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~--~~pfi~vnc~~~-~~~~~e~~LFG 72 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRK--NGPFISVNCAAL-PEELLESELFG 72 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTT--TS-EEEEETTTS--HHHHHHHHHE
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcc--cCCeEEEehhhh-hcchhhhhhhc
Confidence 566666666666554 2333567799999999999999998854322 223444555533 33434444443
No 417
>PRK13975 thymidylate kinase; Provisional
Probab=93.94 E-value=0.052 Score=51.53 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=23.6
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
..|+|.|+.|+||||+|+.++.....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998764
No 418
>PRK15453 phosphoribulokinase; Provisional
Probab=93.93 E-value=0.33 Score=48.32 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+..+|+|.|.+|+||||+|+.+.+...
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999987664
No 419
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.93 E-value=0.32 Score=51.78 Aligned_cols=88 Identities=25% Similarity=0.376 Sum_probs=55.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCC-------CCCCChhHH---
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLK-------FDVESESGR--- 242 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 242 (610)
+...++|.|..|+|||||...+++... .+.++++-+++.. .+.++....+..-+.. ..+.+....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 456899999999999999999988754 3567777776554 4455554444332221 111111111
Q ss_pred ---HHHHHHHHh-CCCeEEEEEeCCCC
Q 007268 243 ---ARILYDRLK-KEERILVILDNIWE 265 (610)
Q Consensus 243 ---~~~l~~~L~-~~kr~LLVLDdv~~ 265 (610)
...+.+++. +++++||++|++-.
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 223455553 48999999999854
No 420
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=93.92 E-value=0.068 Score=53.55 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=28.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
+|+|.|-||+||||+|..++.....+ -..++-|+....
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~--G~rvlliD~Dpq 39 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKR--GKKVLQIGCDPK 39 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence 68888999999999999998887654 224555555543
No 421
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.92 E-value=0.52 Score=46.25 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=36.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIAD 228 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (610)
...++.|.|.+|+|||+++.+++.....+. -..++|++... +..++...++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHHH
Confidence 346899999999999999999887765431 23667777655 44556666543
No 422
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.92 E-value=0.055 Score=51.43 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=22.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 423
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.92 E-value=0.43 Score=50.96 Aligned_cols=92 Identities=16% Similarity=0.278 Sum_probs=59.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCC-------CCCCChhH----
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLK-------FDVESESG---- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 241 (610)
+...++|.|.+|+|||+|+.++........ -..++++-+++.. .+.+++.++...-... ....+...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 446799999999999999999987765432 3467777776554 4566777765432221 11122111
Q ss_pred --HHHHHHHHHh--CCCeEEEEEeCCCCc
Q 007268 242 --RARILYDRLK--KEERILVILDNIWEN 266 (610)
Q Consensus 242 --~~~~l~~~L~--~~kr~LLVLDdv~~~ 266 (610)
....+.+++. +++++||++||+-..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 1234556664 378999999999543
No 424
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.91 E-value=0.39 Score=49.21 Aligned_cols=88 Identities=25% Similarity=0.342 Sum_probs=52.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeC-CCCChHHHHHHHHHhhCCC-------CCCCChhH----
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVS-ESRDVRKIQGEIADKLGLK-------FDVESESG---- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 241 (610)
....++|.|..|+|||||.+.+..... .+..+..-+. ....+.++.......-+.. ....+...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 346789999999999999998887654 2333444444 3345566666555543321 11111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCCC
Q 007268 242 --RARILYDRLK-KEERILVILDNIWE 265 (610)
Q Consensus 242 --~~~~l~~~L~-~~kr~LLVLDdv~~ 265 (610)
....+.+++. +++.+||++||+-.
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 1223444443 47999999999853
No 425
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.90 E-value=0.084 Score=48.12 Aligned_cols=34 Identities=26% Similarity=0.549 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 163 LNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 163 ~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+++|.+++.. ++++++|..|+|||||+..+....
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5667777743 799999999999999999988654
No 426
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=93.89 E-value=0.07 Score=53.47 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=28.9
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
+|++.|-||+||||++..++.....+ =..+.-|+.....+
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~--g~rVLliD~D~q~~ 41 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKL--GKRVLQIGCDPKHD 41 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhC--CCeEEEEecCcccc
Confidence 57888999999999999988776643 22456666655443
No 427
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.89 E-value=0.039 Score=50.65 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=19.8
Q ss_pred EEEEecCCchHHHHHHHHHHHh
Q 007268 178 LLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~ 199 (610)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 428
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.87 E-value=0.36 Score=51.41 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=59.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhcc------C-----CCCCeEEEEEeCCCCChHHHHHHHHHhhC-CCC-------
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAES------D-----KLFDQVVLSEVSESRDVRKIQGEIADKLG-LKF------- 234 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~-----~~f~~~~wv~vs~~~~~~~~~~~i~~~l~-~~~------- 234 (610)
+..-++|.|-+|+|||+|+.++.+.... . ..-..+++.-+++.....+.+.+.+..-+ ...
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 3457899999999999999999887651 0 00115677777877666666666666555 221
Q ss_pred CCCChhH------HHHHHHHHHh--CCCeEEEEEeCCCC
Q 007268 235 DVESESG------RARILYDRLK--KEERILVILDNIWE 265 (610)
Q Consensus 235 ~~~~~~~------~~~~l~~~L~--~~kr~LLVLDdv~~ 265 (610)
..++... ....+.+++. +++++||++||+-.
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1111111 1234566666 47999999999853
No 429
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=0.2 Score=47.83 Aligned_cols=115 Identities=26% Similarity=0.293 Sum_probs=65.2
Q ss_pred HHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccC-CCCC--eEEEEEeCCCCChHHHHHHHHHhhCC--------CC
Q 007268 166 IMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESD-KLFD--QVVLSEVSESRDVRKIQGEIADKLGL--------KF 234 (610)
Q Consensus 166 L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~f~--~~~wv~vs~~~~~~~~~~~i~~~l~~--------~~ 234 (610)
++..|-+++.--..|.|++|+|||||.+.+++..... +.|- .+.-|+-++ +|+..+.. ..
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers---------EIag~~~gvpq~~~g~R~ 198 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS---------EIAGCLNGVPQHGRGRRM 198 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc---------hhhccccCCchhhhhhhh
Confidence 4455545555557899999999999999999887653 2343 233333222 22221111 11
Q ss_pred CCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEeccc
Q 007268 235 DVESESGRARILYDRLKKEERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSE 292 (610)
Q Consensus 235 ~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 292 (610)
+..+..-..+-+.....+-.+=++|+|.+-..++-..+..+ .+.|.+++.|..-.
T Consensus 199 dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta---~~~GVkli~TaHG~ 253 (308)
T COG3854 199 DVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTA---LHAGVKLITTAHGN 253 (308)
T ss_pred hhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHH---HhcCcEEEEeeccc
Confidence 11111112233444444456789999999877666555444 35677777776543
No 430
>PRK05973 replicative DNA helicase; Provisional
Probab=93.85 E-value=0.18 Score=49.19 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=34.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEI 226 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 226 (610)
+..++.|.|.+|+|||+++.+++.....+ -..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC--HHHHHHHH
Confidence 34689999999999999999998776543 345677766654 34444443
No 431
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.85 E-value=0.23 Score=53.99 Aligned_cols=99 Identities=19% Similarity=0.150 Sum_probs=54.2
Q ss_pred HHHHhc-CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeE-EEEEeCCCCC-hHHHHHHHHHhhCCCCCCCCh---
Q 007268 166 IMDALK-NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQV-VLSEVSESRD-VRKIQGEIADKLGLKFDVESE--- 239 (610)
Q Consensus 166 L~~~L~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~-~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~--- 239 (610)
+++.|. -.......|+|++|+|||||++.+++..... +-++. +.+-+.+... +.++.+.+-..+-......+.
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~ 484 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDH 484 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHH
Confidence 444444 2344678999999999999999999876542 23333 3445555443 333333321111001111111
Q ss_pred ---hHHHHHHHHHHh-CCCeEEEEEeCCCC
Q 007268 240 ---SGRARILYDRLK-KEERILVILDNIWE 265 (610)
Q Consensus 240 ---~~~~~~l~~~L~-~~kr~LLVLDdv~~ 265 (610)
......+.+++. .++.+||++|++-.
T Consensus 485 ~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 485 TTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 112233444553 58999999999853
No 432
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.83 E-value=0.36 Score=49.57 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=39.8
Q ss_pred HHHHhc-CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHH
Q 007268 166 IMDALK-NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEI 226 (610)
Q Consensus 166 L~~~L~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i 226 (610)
.++.|. -.+...++|.|..|+|||+|+.++++... -+.++++-+++.. .+.+++.++
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHH
Confidence 444443 13345899999999999999999988643 3578888887654 455555554
No 433
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.83 E-value=0.2 Score=53.04 Aligned_cols=47 Identities=26% Similarity=0.243 Sum_probs=35.1
Q ss_pred cCccccHHHHHHHHHHhc-------C----C-------CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 154 EAFESRASILNEIMDALK-------N----P-------NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~-------~----~-------~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..++|.++.++.+...+. . . ....+.++|++|+|||++|+.++....
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 456898888887755441 1 1 125799999999999999999997654
No 434
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.82 E-value=0.17 Score=48.32 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=23.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+....|+|+|.+|+|||||...+....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 345689999999999999999988763
No 435
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.80 E-value=0.057 Score=47.71 Aligned_cols=35 Identities=34% Similarity=0.502 Sum_probs=27.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
+-|.|.|-+|+|||||+.+++.... .-|+++++-.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~v 42 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLV 42 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHH
Confidence 5688999999999999999996544 2366666543
No 436
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.80 E-value=0.054 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=20.2
Q ss_pred EEEEecCCchHHHHHHHHHHHhcc
Q 007268 178 LLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
|.|+|..|+|||||.+.+......
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999876543
No 437
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.79 E-value=0.051 Score=50.25 Aligned_cols=24 Identities=46% Similarity=0.660 Sum_probs=20.6
Q ss_pred EEEEecCCchHHHHHHHHHHHhcc
Q 007268 178 LLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
|.|.|.+|+|||||++.++...+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988753
No 438
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.78 E-value=0.26 Score=52.34 Aligned_cols=89 Identities=24% Similarity=0.300 Sum_probs=51.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCC-------CCCChhH-----
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKF-------DVESESG----- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-------~~~~~~~----- 241 (610)
+...++|.|..|+|||||++.+...... ...++...-.+...+.++....+..-+... ...+...
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 4468999999999999999888865432 223333333334445556555544332221 1111111
Q ss_pred -HHHHHHHHHh-CCCeEEEEEeCCCC
Q 007268 242 -RARILYDRLK-KEERILVILDNIWE 265 (610)
Q Consensus 242 -~~~~l~~~L~-~~kr~LLVLDdv~~ 265 (610)
....+.+++. +++.+||++||+-.
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1223455553 47899999999854
No 439
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.73 E-value=0.16 Score=48.40 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
..+|+|.|+.|+||||+++.+.+.....
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999887543
No 440
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.73 E-value=0.051 Score=49.17 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998875
No 441
>PRK06851 hypothetical protein; Provisional
Probab=93.69 E-value=0.76 Score=47.86 Aligned_cols=45 Identities=31% Similarity=0.341 Sum_probs=33.8
Q ss_pred CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 172 NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 172 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
.+-.+++.|.|.+|+|||||++.++.....+ .++..++-|.+.+.
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dPd 255 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDPD 255 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCCC
Confidence 3445889999999999999999999988654 35555555554443
No 442
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.69 E-value=0.17 Score=52.72 Aligned_cols=111 Identities=12% Similarity=0.138 Sum_probs=58.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHH-HHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRK-IQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
....+.|.|+.|+||||+...+....... ....++. +.++..... -...+..+-.. ..........+...|.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~t-iEdp~E~~~~~~~~~i~q~ev---g~~~~~~~~~l~~~lr- 193 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHIIT-IEDPIEYVHRNKRSLINQREV---GLDTLSFANALRAALR- 193 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEE-EcCChhhhccCccceEEcccc---CCCCcCHHHHHHHhhc-
Confidence 34789999999999999999988765422 3333332 222211100 00000000000 1111123334455555
Q ss_pred CCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEeccccc
Q 007268 253 EERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEV 294 (610)
Q Consensus 253 ~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 294 (610)
..+=.|++|.+.+.+.+...... ...|..|+.|+.....
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSA 232 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCH
Confidence 47889999999877665543222 2335556666655443
No 443
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.37 Score=49.52 Aligned_cols=27 Identities=41% Similarity=0.479 Sum_probs=23.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
-+-|.++|++|.|||-||+.|+.....
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 467899999999999999999987663
No 444
>PRK13948 shikimate kinase; Provisional
Probab=93.66 E-value=0.069 Score=50.02 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=24.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.....|.++|+.|+||||+++.+.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3557899999999999999999998864
No 445
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.65 E-value=0.07 Score=51.35 Aligned_cols=27 Identities=37% Similarity=0.405 Sum_probs=23.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+++|+|.+|+|||||++.++--.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 446899999999999999999976544
No 446
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.63 E-value=0.088 Score=52.99 Aligned_cols=41 Identities=29% Similarity=0.475 Sum_probs=30.6
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
+.|+|+|-||+||||++..++.....+. + .++-|+.....+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D~q~~ 41 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCDPKAD 41 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCCCCC
Confidence 4689999999999999999988877643 2 455566654443
No 447
>PHA02244 ATPase-like protein
Probab=93.62 E-value=0.11 Score=53.63 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 164 NEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 164 ~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+..++..+ .-|.|+|++|+|||+||+.+++...
T Consensus 110 ~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 110 ADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455555433 3477899999999999999998754
No 448
>PRK05922 type III secretion system ATPase; Validated
Probab=93.61 E-value=0.45 Score=50.62 Aligned_cols=89 Identities=19% Similarity=0.302 Sum_probs=52.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC-CCChHHHHHHHHHhhCCCC-------CCCChhH----
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE-SRDVRKIQGEIADKLGLKF-------DVESESG---- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~---- 241 (610)
+...++|.|..|+|||||.+.+..... .+...++.++. .....+.+.+....+.... .+.+...
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 445799999999999999999886543 33334433333 3334455555544433221 1111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCCCc
Q 007268 242 --RARILYDRLK-KEERILVILDNIWEN 266 (610)
Q Consensus 242 --~~~~l~~~L~-~~kr~LLVLDdv~~~ 266 (610)
....+.+++. +++++||++||+-..
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1234555553 489999999999543
No 449
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.61 E-value=0.2 Score=46.43 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=31.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhh
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKL 230 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (610)
++.|.|.+|+|||++|..+...... .++++...... ..+....|....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~-~~e~~~ri~~h~ 50 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPF-DDEMAARIAHHR 50 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCC-hHHHHHHHHHHH
Confidence 6899999999999999999876432 23444443333 334555554433
No 450
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.61 E-value=0.065 Score=49.80 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=22.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...|.|+|+.|+||||+++.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35699999999999999999998754
No 451
>PLN02165 adenylate isopentenyltransferase
Probab=93.59 E-value=0.071 Score=54.45 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=25.6
Q ss_pred cCCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 171 KNPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 171 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
......+++|+|+.|+|||+||..++....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 445567999999999999999999998854
No 452
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.59 E-value=0.2 Score=57.77 Aligned_cols=178 Identities=17% Similarity=0.248 Sum_probs=84.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhc-cC-------------CCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCC
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAE-SD-------------KLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVES 238 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~-------------~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 238 (610)
++.+++.|+|+.+.||||+.+.+.-..- .+ ..|+ .++..++...++..-+..+...+
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~~m-------- 395 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSGHM-------- 395 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHHHH--------
Confidence 3457899999999999999998864311 00 1111 22233333222221111111110
Q ss_pred hhHHHHHHHHHHhCCCeEEEEEeCCCCcccc---hhh----cCCCCCCCCCeEEEEEecccccccccCCccc--eecCCC
Q 007268 239 ESGRARILYDRLKKEERILVILDNIWENLDL---LDV----GIPHGDDHKGCKVLFTARSEEVLSGEMESRK--NFPVGF 309 (610)
Q Consensus 239 ~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~~---~~l----~~~l~~~~~gs~IivTTR~~~va~~~~~~~~--~~~l~~ 309 (610)
.....+...+ ..+-|++||..-...+. ..+ ...+. ..|+.+|+||....+......... ...+.
T Consensus 396 --~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~- 468 (782)
T PRK00409 396 --TNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE- 468 (782)
T ss_pred --HHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-
Confidence 0111222222 36789999998654321 112 12221 246789999998776422111111 11111
Q ss_pred CCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCHHHHHHHHHHh
Q 007268 310 LKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALRNKGIREWKDALEQL 372 (610)
Q Consensus 310 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~~~~~~~w~~~l~~l 372 (610)
++. +......+...+. +. ...|-.|++.+ |+|-.|..-|.-+......++..++..|
T Consensus 469 ~d~-~~l~~~Ykl~~G~-~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l 525 (782)
T PRK00409 469 FDE-ETLRPTYRLLIGI-PG---KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASL 525 (782)
T ss_pred Eec-CcCcEEEEEeeCC-CC---CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 111 1110000111111 11 23466777776 7887777777777655444555555544
No 453
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.56 E-value=0.37 Score=53.16 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=35.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEI 226 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 226 (610)
...++.|.|.+|+|||+||.+++.....+ +-..++|++.... ..++.+.+
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-~ge~~lyis~ee~--~~~i~~~~ 79 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKR-FDEPGVFVTFEES--PEDIIRNV 79 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCEEEEEccCC--HHHHHHHH
Confidence 45799999999999999999987665432 1246788887764 33444443
No 454
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.55 E-value=0.051 Score=48.41 Aligned_cols=24 Identities=29% Similarity=0.663 Sum_probs=21.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.++|+|+.|+|||||++.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998643
No 455
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.54 E-value=0.35 Score=51.68 Aligned_cols=90 Identities=22% Similarity=0.296 Sum_probs=54.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCC-------CCCChhH----
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKF-------DVESESG---- 241 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-------~~~~~~~---- 241 (610)
.+...++|.|..|+|||||++.++...... .++++..-.+...+.++.+.+...-+... .+.+...
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 345689999999999999999998654421 24444443444456666666654432211 1111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCCC
Q 007268 242 --RARILYDRLK-KEERILVILDNIWE 265 (610)
Q Consensus 242 --~~~~l~~~L~-~~kr~LLVLDdv~~ 265 (610)
....+.+++. +++.+||++||+-.
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1223445553 47899999999854
No 456
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.52 E-value=0.055 Score=50.96 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=21.3
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997654
No 457
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.52 E-value=0.2 Score=52.74 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=37.1
Q ss_pred cCccccHHHHHHHHHHhcC--------------CCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 154 EAFESRASILNEIMDALKN--------------PNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~--------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
..++|.++.+..+..++.. ..++.+.++|++|+|||+||+.++.....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4577888888877666631 12468899999999999999999988653
No 458
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.52 E-value=0.15 Score=56.29 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=40.8
Q ss_pred CcCccccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 153 YEAFESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
...++|....+.++++.+. .....-|.|+|..|+||+.+|+.+....... -...+.+++...
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~--~~pfv~inca~~ 266 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRG--KKPFLALNCASI 266 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeccccC
Confidence 4578888887777766554 2223458899999999999999975543221 123355655543
No 459
>PRK13946 shikimate kinase; Provisional
Probab=93.51 E-value=0.067 Score=50.32 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=23.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+.|.++|++|+||||+++.+++...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999999875
No 460
>PLN02200 adenylate kinase family protein
Probab=93.50 E-value=0.072 Score=52.16 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+.+|.|.|++|+||||+|+.++....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987653
No 461
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.93 Score=50.65 Aligned_cols=168 Identities=17% Similarity=0.155 Sum_probs=87.4
Q ss_pred CccccHHHHHHHHHHhcCC---------CceEEEEEecCCchHHHHHHHHHHHhccCCCC--CeEEEEEeCCCCChHHHH
Q 007268 155 AFESRASILNEIMDALKNP---------NVNMLLIYGMGGIGKTTLAKKVARKAESDKLF--DQVVLSEVSESRDVRKIQ 223 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f--~~~~wv~vs~~~~~~~~~ 223 (610)
...+++..+..+.+.+..+ ...++.++|.+|+||||+++.++...... .| +|.=.++-+..
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h-~~evdc~el~~~s~~------- 473 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH-LLEVDCYELVAESAS------- 473 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCc-eEeccHHHHhhcccc-------
Confidence 3456777777788887621 34678999999999999999999886542 11 11111111111
Q ss_pred HHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc-------cc------chhhcC--CCCCCCCCeEEEEE
Q 007268 224 GEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN-------LD------LLDVGI--PHGDDHKGCKVLFT 288 (610)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~-------~~------~~~l~~--~l~~~~~gs~IivT 288 (610)
..+.........-+.-.+.+|.|-|++-. ++ ...+.. -+....++.-++.|
T Consensus 474 --------------~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t 539 (953)
T KOG0736|consen 474 --------------HTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVAT 539 (953)
T ss_pred --------------hhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEe
Confidence 11112222222222234566666555311 11 011111 11112334444444
Q ss_pred ecc-cccccccC-CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCc
Q 007268 289 ARS-EEVLSGEM-ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGL 346 (610)
Q Consensus 289 TR~-~~va~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 346 (610)
|.+ +.+..... ...+.++++.+++++-.++|+-+.....-.. ....+.++++|.|.
T Consensus 540 ~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~--~v~~k~~a~~t~gf 597 (953)
T KOG0736|consen 540 TSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQ--DVNLKQLARKTSGF 597 (953)
T ss_pred ccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccch--HHHHHHHHHhcCCC
Confidence 433 33322111 1235789999999999999998875332221 12345566666654
No 462
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.49 E-value=0.094 Score=51.45 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=23.6
Q ss_pred EEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 180 IYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 180 I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
|+|++|+||||+++.+.+..... -..++-|+..+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~--~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN--GRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc--cCCceEEEcch
Confidence 68999999999999999988765 23455555543
No 463
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.47 E-value=0.073 Score=48.51 Aligned_cols=28 Identities=39% Similarity=0.528 Sum_probs=25.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
.++++|+|..|+|||||...+......+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 4799999999999999999999998875
No 464
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.47 E-value=0.066 Score=51.36 Aligned_cols=26 Identities=19% Similarity=0.469 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHH
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
...+.+.|+|++|+|||||+..+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45688999999999999999998754
No 465
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.38 E-value=0.08 Score=47.84 Aligned_cols=47 Identities=30% Similarity=0.399 Sum_probs=33.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLK 233 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (610)
.++++|+|.+|+||||+.+.+.... .. + . ..+.-.+.-+++...|..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~--~-~--------ivNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VK--H-K--------IVNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hh--c-e--------eeeHhHHHHHHHHHhCCc
Confidence 5799999999999999999888776 11 1 1 124455666777666654
No 466
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.11 Score=51.67 Aligned_cols=29 Identities=41% Similarity=0.535 Sum_probs=25.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
.+..+.|||++|.|||-+|+.++......
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 46789999999999999999999988765
No 467
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.34 E-value=0.062 Score=50.21 Aligned_cols=27 Identities=33% Similarity=0.640 Sum_probs=23.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
+.|.+.|.+|+||||+|+++++..+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 468899999999999999999887754
No 468
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.33 E-value=0.72 Score=49.70 Aligned_cols=92 Identities=14% Similarity=0.167 Sum_probs=55.1
Q ss_pred CceEEEEEecCCchHHHHH-HHHHHHhcc-----CCCCCeEEEEEeCCCCChHHHHHHHHHhhC-CCC-------CCCCh
Q 007268 174 NVNMLLIYGMGGIGKTTLA-KKVARKAES-----DKLFDQVVLSEVSESRDVRKIQGEIADKLG-LKF-------DVESE 239 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA-~~v~~~~~~-----~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~-~~~-------~~~~~ 239 (610)
+...++|.|..|+|||+|| -.+.++... .+.-..++++-+++..+...-+.+.++.-+ ... ..++.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4467899999999999997 555666422 123457888888877654333444444443 211 11111
Q ss_pred hH------HHHHHHHHHh-CCCeEEEEEeCCCC
Q 007268 240 SG------RARILYDRLK-KEERILVILDNIWE 265 (610)
Q Consensus 240 ~~------~~~~l~~~L~-~~kr~LLVLDdv~~ 265 (610)
.. ....+.+++. +++..|+|+||+-.
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11 1223444443 47999999999954
No 469
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=93.32 E-value=0.74 Score=48.69 Aligned_cols=81 Identities=21% Similarity=0.260 Sum_probs=63.9
Q ss_pred ccccHHHHHHHHHHhc---CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-------ChHHHHHH
Q 007268 156 FESRASILNEIMDALK---NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-------DVRKIQGE 225 (610)
Q Consensus 156 ~vGR~~~~~~L~~~L~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-------~~~~~~~~ 225 (610)
-|||+.+++.|.+.|. +++..+-.|.|.=|.|||.+.+.+.+....++ | .+..+.+++.. ....++++
T Consensus 27 ~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~~-f-vvs~v~ls~e~~lh~~~g~~~~~Yr~ 104 (416)
T PF10923_consen 27 AVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEKG-F-VVSEVDLSPERPLHGTGGQLEALYRE 104 (416)
T ss_pred eechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHcC-C-EEEEEecCCCcccccccccHHHHHHH
Confidence 4799999999988776 67778889999999999999999998877652 3 56667676532 45679999
Q ss_pred HHHhhCCCCCCCC
Q 007268 226 IADKLGLKFDVES 238 (610)
Q Consensus 226 i~~~l~~~~~~~~ 238 (610)
|++.|..+..+..
T Consensus 105 l~~nL~t~~~p~G 117 (416)
T PF10923_consen 105 LMRNLSTKTKPEG 117 (416)
T ss_pred HHHhcCCCCCCCc
Confidence 9999987754433
No 470
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.30 E-value=0.062 Score=48.93 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=18.8
Q ss_pred EEEEEecCCchHHHHHHHHH
Q 007268 177 MLLIYGMGGIGKTTLAKKVA 196 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~ 196 (610)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 471
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.30 E-value=0.075 Score=44.83 Aligned_cols=22 Identities=45% Similarity=0.513 Sum_probs=20.0
Q ss_pred ceEEEEEecCCchHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVA 196 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~ 196 (610)
...++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 472
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=93.30 E-value=0.15 Score=51.13 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=32.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVR 220 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 220 (610)
++|+|.|-||+||||++..++...... =..++-|+.....+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~--G~kVlliD~Dpq~n~~ 44 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEM--GKKVMIVGCDPKADST 44 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhC--CCeEEEEEcCCCCCch
Confidence 478888999999999999998887653 2256777776655443
No 473
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.29 E-value=0.062 Score=53.27 Aligned_cols=25 Identities=32% Similarity=0.765 Sum_probs=22.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHhcc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.|.++|++|+||||+|+.+......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999988754
No 474
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.28 E-value=0.072 Score=48.93 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=17.9
Q ss_pred EEEEecCCchHHHHHHHHHHH
Q 007268 178 LLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~ 198 (610)
|+|.|..|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 475
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=93.26 E-value=0.098 Score=53.05 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=29.7
Q ss_pred EEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh
Q 007268 178 LLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV 219 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~ 219 (610)
|+|+|-||+||||++..++...... =..+.-|++....+.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~--G~rVLlID~DpQ~n~ 42 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARR--GKKVLQIGCDPKHDS 42 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEeccCCCcc
Confidence 7899999999999999998887653 123556666555443
No 476
>PRK04182 cytidylate kinase; Provisional
Probab=93.25 E-value=0.076 Score=49.45 Aligned_cols=24 Identities=42% Similarity=0.541 Sum_probs=22.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+|.|.|+.|+||||+|+.++....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998864
No 477
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.22 E-value=0.4 Score=51.00 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=52.8
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCCC-------CCCCChhH---
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGLK-------FDVESESG--- 241 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~--- 241 (610)
.....++|.|..|+|||||++.+.+... .+..++..++.. ..+.+++.+....-... ....+...
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 3456899999999999999998876543 444555555543 34445555543211111 11111111
Q ss_pred ---HHHHHHHHHh-CCCeEEEEEeCCCC
Q 007268 242 ---RARILYDRLK-KEERILVILDNIWE 265 (610)
Q Consensus 242 ---~~~~l~~~L~-~~kr~LLVLDdv~~ 265 (610)
....+.+++. +++++||++||+-.
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 1223455553 47899999999954
No 478
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.19 E-value=0.069 Score=48.65 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=25.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEE
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVL 210 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~w 210 (610)
+++|+|+.|+|||||+..+....+.+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 57899999999999999999987653 3444333
No 479
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.18 E-value=0.055 Score=52.43 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~ 197 (610)
..+++.|.|+.|.||||+.+.+..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446889999999999999999876
No 480
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=93.17 E-value=0.46 Score=51.12 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=58.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCC--CCCeEEEEEeCCCC-ChHHHHHHHHHhhCCC-------CCCCChhH--
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDK--LFDQVVLSEVSESR-DVRKIQGEIADKLGLK-------FDVESESG-- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-- 241 (610)
....++|.|..|+|||+|+..+.+.....+ .--.++++-+++.. .+.+++.++...-... ....+...
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~ 221 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERI 221 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHH
Confidence 345789999999999999999988765321 01156777776554 5666777766542221 11111111
Q ss_pred ----HHHHHHHHHh--CCCeEEEEEeCCCC
Q 007268 242 ----RARILYDRLK--KEERILVILDNIWE 265 (610)
Q Consensus 242 ----~~~~l~~~L~--~~kr~LLVLDdv~~ 265 (610)
....+.+++. +++++||++||+-.
T Consensus 222 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 222 LTPRMALTAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcChHH
Confidence 2334666766 57999999999853
No 481
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.15 E-value=0.34 Score=51.43 Aligned_cols=88 Identities=26% Similarity=0.373 Sum_probs=52.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCCC-------CCCCChhH----
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGLK-------FDVESESG---- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 241 (610)
+...++|.|..|+|||||+..+..... .+..+...+... ..+.++...+...-... ....+...
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 446799999999999999988886543 334444555543 34555555554432221 11111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCCC
Q 007268 242 --RARILYDRLK-KEERILVILDNIWE 265 (610)
Q Consensus 242 --~~~~l~~~L~-~~kr~LLVLDdv~~ 265 (610)
....+.+++. +++++||++||+-.
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 1223455553 47899999999853
No 482
>PRK14532 adenylate kinase; Provisional
Probab=93.10 E-value=0.075 Score=50.10 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEecCCchHHHHHHHHHHHhc
Q 007268 178 LLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
|.|.|++|+||||+|+.++....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999987653
No 483
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=93.07 E-value=0.085 Score=48.69 Aligned_cols=24 Identities=46% Similarity=0.562 Sum_probs=21.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+|.|.|+.|+||||+|+.+.+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988754
No 484
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.07 E-value=0.21 Score=47.42 Aligned_cols=30 Identities=33% Similarity=0.435 Sum_probs=25.4
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
++-+++.|.|++|+||||++..+.......
T Consensus 16 ~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 16 SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 445789999999999999999988877664
No 485
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.84 Score=48.15 Aligned_cols=72 Identities=31% Similarity=0.399 Sum_probs=42.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKE 253 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~ 253 (610)
..+-+.+.|++|.|||.|++.++-..... | +-++.+. |.....+.. ...+..+..--+..
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~at--f---f~iSass--------------LtsK~~Ge~-eK~vralf~vAr~~ 244 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESGAT--F---FNISASS--------------LTSKYVGES-EKLVRALFKVARSL 244 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhcce--E---eeccHHH--------------hhhhccChH-HHHHHHHHHHHHhc
Confidence 45667799999999999999999876643 2 1111111 111111111 22334444444446
Q ss_pred CeEEEEEeCCCC
Q 007268 254 ERILVILDNIWE 265 (610)
Q Consensus 254 kr~LLVLDdv~~ 265 (610)
++.++++|+++.
T Consensus 245 qPsvifidEids 256 (428)
T KOG0740|consen 245 QPSVIFIDEIDS 256 (428)
T ss_pred CCeEEEechhHH
Confidence 789999999864
No 486
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.03 E-value=0.35 Score=51.41 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=54.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCC-------CCCChhH-----
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKF-------DVESESG----- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-------~~~~~~~----- 241 (610)
....++|.|..|+|||||+..++..... ...++...-.+.....+++...+..-+... ...+...
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 4468899999999999999999876542 223443322334566677666655433221 1111111
Q ss_pred -HHHHHHHHHh-CCCeEEEEEeCCCCc
Q 007268 242 -RARILYDRLK-KEERILVILDNIWEN 266 (610)
Q Consensus 242 -~~~~l~~~L~-~~kr~LLVLDdv~~~ 266 (610)
....+.+++. ++++.||++|++-..
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 1223444443 479999999998654
No 487
>PRK06761 hypothetical protein; Provisional
Probab=93.03 E-value=0.17 Score=50.68 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
++|.|.|++|+||||+++.+++....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 58999999999999999999998764
No 488
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.03 E-value=0.043 Score=52.48 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHHH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~ 197 (610)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6999999999999999999984
No 489
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.02 E-value=0.37 Score=47.83 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=32.6
Q ss_pred ccccHHHHHHHHHHhc-------CCCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 156 FESRASILNEIMDALK-------NPNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 156 ~vGR~~~~~~L~~~L~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
++|..-..+.++..+. ..++-+++++|.+|+||...++.+++....
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~ 136 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYR 136 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHh
Confidence 4454444444444443 245678999999999999999999987654
No 490
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.01 E-value=0.33 Score=45.52 Aligned_cols=118 Identities=20% Similarity=0.166 Sum_probs=64.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC---CCChHHHHHHHH--H--hhCCC--CCCCChhH---
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE---SRDVRKIQGEIA--D--KLGLK--FDVESESG--- 241 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~i~--~--~l~~~--~~~~~~~~--- 241 (610)
....|.|+|..|-||||.|.-.+-+..... + .+..+..-. .......+..+- . +.+.. ....+..+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G-~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHG-K-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCC-C-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 346899999999999999999888876542 2 233332221 223333333320 0 01111 11111111
Q ss_pred ----HHHHHHHHHhCCCeEEEEEeCCCCcc-----cchhhcCCCCCCCCCeEEEEEecccc
Q 007268 242 ----RARILYDRLKKEERILVILDNIWENL-----DLLDVGIPHGDDHKGCKVLFTARSEE 293 (610)
Q Consensus 242 ----~~~~l~~~L~~~kr~LLVLDdv~~~~-----~~~~l~~~l~~~~~gs~IivTTR~~~ 293 (610)
......+.+..++-=|||||.+-..- ..+.+...+.....+.-||+|-|+..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 23344555555666699999985332 23333333333445668999999864
No 491
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.99 E-value=0.16 Score=56.39 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=35.4
Q ss_pred CccccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 155 AFESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
..+.|.+..+.|.++.. ..+..+|.|+|++|+||||+|+.++.....
T Consensus 370 ~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 370 EWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred hhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 34456666666666554 234568999999999999999999998764
No 492
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.99 E-value=0.2 Score=55.93 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=34.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCC-CCCeEEEEEeCCCCChHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDK-LFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
.++..|.|.+|+||||++..+........ .-...+.+..+...-...+...+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 46899999999999999999887653321 112456666665554444444443
No 493
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.94 E-value=0.082 Score=49.97 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.7
Q ss_pred EEEEecCCchHHHHHHHHHHHhc
Q 007268 178 LLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
|.|.|++|+||||+|+.++....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998753
No 494
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.93 E-value=0.091 Score=48.64 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..|.|+|++|+||||+|+.+++...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588899999999999999998864
No 495
>PRK13695 putative NTPase; Provisional
Probab=92.92 E-value=0.13 Score=47.79 Aligned_cols=25 Identities=40% Similarity=0.473 Sum_probs=21.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHhcc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.++|+|.+|+|||||++.+++....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999887654
No 496
>PRK14531 adenylate kinase; Provisional
Probab=92.91 E-value=0.095 Score=49.23 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=22.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..|.|.|++|+||||+++.++....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998864
No 497
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.90 E-value=0.17 Score=47.89 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=31.7
Q ss_pred CcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHH
Q 007268 153 YEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
...++|.+..+..|.-.... ..-+.++|++|+|||++|+.+..-
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHh
Confidence 34677888777776555443 468999999999999999998764
No 498
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.89 E-value=0.44 Score=51.26 Aligned_cols=92 Identities=17% Similarity=0.230 Sum_probs=58.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCC--------------CCCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLK--------------FDVES 238 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~--------------~~~~~ 238 (610)
+...++|.|.+|+|||+|+.++....... +-+.++++-+++.. ...+++..+...-... ....+
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 44679999999999999999988774321 12678888887654 4566777666521111 01111
Q ss_pred hh------HHHHHHHHHHhC-C-CeEEEEEeCCCCc
Q 007268 239 ES------GRARILYDRLKK-E-ERILVILDNIWEN 266 (610)
Q Consensus 239 ~~------~~~~~l~~~L~~-~-kr~LLVLDdv~~~ 266 (610)
.. .....+.+++.. + +++||++||+-..
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 11 123346666653 4 4999999999543
No 499
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.89 E-value=1 Score=49.48 Aligned_cols=120 Identities=22% Similarity=0.214 Sum_probs=64.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccC-C-----CCCeEEEEEeCC-----C----------C-C-hHHHHHHHHHhh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESD-K-----LFDQVVLSEVSE-----S----------R-D-VRKIQGEIADKL 230 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~-----~f~~~~wv~vs~-----~----------~-~-~~~~~~~i~~~l 230 (610)
+...|+|+|+.|+|||||.+.+....... . .--.+.|+.-.. . + . ...-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 34679999999999999999997655422 0 001122221111 0 0 1 144555566666
Q ss_pred CCCCCC-------CChhHHHHHHHHHHhCCCeEEEEEeCCCCcccch---hhcCCCCCCCCCeEEEEEecccccc
Q 007268 231 GLKFDV-------ESESGRARILYDRLKKEERILVILDNIWENLDLL---DVGIPHGDDHKGCKVLFTARSEEVL 295 (610)
Q Consensus 231 ~~~~~~-------~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~~~---~l~~~l~~~~~gs~IivTTR~~~va 295 (610)
+.+.+. -+-.+...-....+.-.++-+||||.--+.-+.+ .+...+. .-+|+ ||+.|.++...
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~-~f~Gt-vl~VSHDr~Fl 499 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL-DFEGT-VLLVSHDRYFL 499 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHH-hCCCe-EEEEeCCHHHH
Confidence 655332 1222333333444444578999999876543322 2222221 12354 88888887654
No 500
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.87 E-value=0.096 Score=42.80 Aligned_cols=25 Identities=40% Similarity=0.701 Sum_probs=22.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHhcc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
++.+.|.+|+||||++..++.....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999988765
Done!