Query 007268
Match_columns 610
No_of_seqs 500 out of 3047
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 21:30:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.5E-46 1.9E-50 410.2 17.5 312 157-522 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 3.7E-39 1.3E-43 389.8 24.2 309 149-514 119-447 (1249)
3 1vt4_I APAF-1 related killer D 100.0 9.4E-38 3.2E-42 350.1 19.8 279 155-511 129-435 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.4E-36 2.2E-40 333.8 23.3 306 151-514 121-447 (591)
5 2qen_A Walker-type ATPase; unk 99.7 1.6E-15 5.5E-20 156.9 20.6 289 149-512 7-348 (350)
6 2fna_A Conserved hypothetical 99.6 2.8E-15 9.7E-20 155.4 17.5 238 150-412 9-301 (357)
7 1w5s_A Origin recognition comp 99.6 1.3E-14 4.6E-19 153.7 19.1 304 154-508 22-387 (412)
8 3qfl_A MLA10; coiled-coil, (CC 99.5 4.6E-14 1.6E-18 120.5 9.6 78 18-96 4-82 (115)
9 2qby_B CDC6 homolog 3, cell di 99.4 3.8E-12 1.3E-16 133.4 20.0 236 154-412 20-295 (384)
10 2qby_A CDC6 homolog 1, cell di 99.4 5.1E-12 1.7E-16 132.3 19.4 243 154-411 20-296 (386)
11 2v1u_A Cell division control p 99.4 2.2E-11 7.5E-16 127.5 19.6 240 154-411 19-300 (387)
12 1njg_A DNA polymerase III subu 99.4 1.1E-11 3.9E-16 120.5 16.1 199 151-357 20-231 (250)
13 1fnn_A CDC6P, cell division co 99.3 3.8E-11 1.3E-15 125.9 19.9 243 154-412 17-299 (389)
14 2chg_A Replication factor C sm 99.3 1.4E-11 4.9E-16 118.1 14.7 191 151-357 14-207 (226)
15 1hqc_A RUVB; extended AAA-ATPa 99.2 2.3E-10 7.8E-15 116.9 17.1 176 152-357 10-214 (324)
16 1sxj_B Activator 1 37 kDa subu 99.1 3.3E-10 1.1E-14 115.5 12.1 191 151-356 18-212 (323)
17 1iqp_A RFCS; clamp loader, ext 99.0 1.4E-09 4.8E-14 111.0 10.0 189 152-358 23-216 (327)
18 2chq_A Replication factor C sm 98.9 1.7E-08 6E-13 102.4 14.8 186 152-356 15-206 (319)
19 3te6_A Regulatory protein SIR3 98.9 6.7E-08 2.3E-12 97.4 18.2 170 155-324 21-212 (318)
20 1jr3_A DNA polymerase III subu 98.8 3E-08 1E-12 103.1 15.2 195 153-355 15-222 (373)
21 1jbk_A CLPB protein; beta barr 98.7 1.7E-08 5.9E-13 93.9 8.6 154 152-319 20-194 (195)
22 3h4m_A Proteasome-activating n 98.6 4.2E-07 1.4E-11 90.7 14.6 182 150-353 13-230 (285)
23 3bos_A Putative DNA replicatio 98.6 6.6E-08 2.2E-12 93.7 7.2 176 152-355 26-218 (242)
24 2qz4_A Paraplegin; AAA+, SPG7, 98.6 1.4E-06 4.7E-11 85.7 16.8 184 152-355 4-223 (262)
25 1sxj_D Activator 1 41 kDa subu 98.6 1.7E-07 5.7E-12 96.7 10.4 196 151-353 34-234 (353)
26 3pvs_A Replication-associated 98.5 1.4E-06 4.8E-11 92.5 15.8 182 151-357 23-218 (447)
27 1sxj_E Activator 1 40 kDa subu 98.5 5.1E-07 1.7E-11 93.1 11.2 198 152-355 12-238 (354)
28 1xwi_A SKD1 protein; VPS4B, AA 98.5 1.1E-05 3.6E-10 82.1 20.4 184 151-354 9-223 (322)
29 1sxj_A Activator 1 95 kDa subu 98.5 1.4E-06 4.8E-11 94.6 14.4 190 151-354 36-253 (516)
30 1d2n_A N-ethylmaleimide-sensit 98.4 2.2E-06 7.4E-11 85.0 14.1 195 155-374 34-263 (272)
31 3u61_B DNA polymerase accessor 98.4 1.3E-06 4.3E-11 89.0 12.4 179 151-351 23-213 (324)
32 3d8b_A Fidgetin-like protein 1 98.4 6.3E-06 2.1E-10 85.1 17.5 184 152-356 82-297 (357)
33 3pfi_A Holliday junction ATP-d 98.4 2.5E-06 8.5E-11 87.4 13.5 175 152-355 27-228 (338)
34 3eie_A Vacuolar protein sortin 98.4 5.4E-06 1.9E-10 84.3 15.7 184 149-353 13-227 (322)
35 3uk6_A RUVB-like 2; hexameric 98.4 4.9E-06 1.7E-10 86.2 15.4 197 153-354 43-303 (368)
36 1a5t_A Delta prime, HOLB; zinc 98.4 4.5E-06 1.5E-10 85.3 14.6 171 159-353 7-204 (334)
37 3vfd_A Spastin; ATPase, microt 98.3 1.5E-05 5.1E-10 83.3 18.2 184 150-354 111-326 (389)
38 1sxj_C Activator 1 40 kDa subu 98.3 3.4E-06 1.1E-10 86.5 12.8 184 151-350 22-208 (340)
39 2zan_A Vacuolar protein sortin 98.3 2.4E-05 8.1E-10 83.2 18.7 185 150-354 130-345 (444)
40 3b9p_A CG5977-PA, isoform A; A 98.3 3E-05 1E-09 77.6 18.3 184 150-354 17-233 (297)
41 3syl_A Protein CBBX; photosynt 98.3 1.4E-06 4.9E-11 87.9 8.6 152 155-324 32-218 (309)
42 2qp9_X Vacuolar protein sortin 98.2 9E-06 3.1E-10 83.8 13.6 183 151-354 48-261 (355)
43 2p65_A Hypothetical protein PF 98.2 2.1E-06 7.3E-11 79.2 8.0 50 152-201 20-69 (187)
44 3pxg_A Negative regulator of g 98.2 6.8E-06 2.3E-10 88.0 12.9 151 152-324 178-339 (468)
45 2z4s_A Chromosomal replication 98.2 7.5E-06 2.6E-10 86.9 11.3 183 153-353 104-305 (440)
46 3cf0_A Transitional endoplasmi 98.1 4.2E-05 1.5E-09 76.8 16.0 177 151-349 12-223 (301)
47 4b4t_J 26S protease regulatory 98.1 6.4E-05 2.2E-09 77.6 17.4 177 149-347 143-354 (405)
48 1qvr_A CLPB protein; coiled co 98.1 1E-05 3.5E-10 93.3 12.3 158 151-323 167-345 (854)
49 4b4t_L 26S protease subunit RP 98.1 9.5E-05 3.3E-09 77.5 17.6 176 150-347 177-387 (437)
50 1l8q_A Chromosomal replication 98.1 1.4E-05 4.7E-10 81.3 10.8 177 153-350 10-204 (324)
51 4b4t_H 26S protease regulatory 98.1 0.00015 5.3E-09 75.8 18.5 175 151-347 206-415 (467)
52 4b4t_M 26S protease regulatory 98.0 4.8E-05 1.6E-09 79.7 14.2 177 149-347 176-387 (434)
53 1r6b_X CLPA protein; AAA+, N-t 98.0 7.9E-05 2.7E-09 84.9 17.2 158 152-323 184-362 (758)
54 4b4t_I 26S protease regulatory 98.0 0.00019 6.4E-09 74.4 18.0 177 149-347 177-388 (437)
55 1lv7_A FTSH; alpha/beta domain 98.0 7.6E-05 2.6E-09 73.0 14.1 181 151-353 9-224 (257)
56 2gno_A DNA polymerase III, gam 98.0 2.3E-05 7.9E-10 78.7 10.0 146 158-323 1-152 (305)
57 3n70_A Transport activator; si 97.9 3.4E-06 1.1E-10 75.0 3.2 46 155-200 2-49 (145)
58 3pxi_A Negative regulator of g 97.9 3.7E-05 1.3E-09 87.5 12.0 151 152-324 178-339 (758)
59 4b4t_K 26S protease regulatory 97.9 0.00028 9.5E-09 73.8 16.3 176 150-347 168-379 (428)
60 3ec2_A DNA replication protein 97.8 1.6E-05 5.5E-10 73.2 5.7 117 159-292 19-143 (180)
61 3hu3_A Transitional endoplasmi 97.8 0.00034 1.2E-08 74.9 15.2 179 153-353 203-414 (489)
62 2ce7_A Cell division protein F 97.7 0.00045 1.5E-08 73.5 15.7 200 152-373 14-257 (476)
63 4fcw_A Chaperone protein CLPB; 97.7 5.6E-05 1.9E-09 76.1 8.2 105 155-266 18-131 (311)
64 2w58_A DNAI, primosome compone 97.7 3.9E-05 1.3E-09 72.0 6.5 114 161-292 36-159 (202)
65 2r62_A Cell division protease 97.7 2.7E-05 9.2E-10 76.7 5.4 152 153-324 10-197 (268)
66 1ofh_A ATP-dependent HSL prote 97.7 0.00016 5.6E-09 72.4 10.5 47 154-200 15-75 (310)
67 1in4_A RUVB, holliday junction 97.7 0.0018 6.2E-08 65.8 18.3 194 151-373 22-251 (334)
68 2c9o_A RUVB-like 1; hexameric 97.6 0.00038 1.3E-08 74.2 12.9 48 153-200 36-88 (456)
69 3co5_A Putative two-component 97.5 1.8E-05 6.2E-10 70.0 0.5 46 154-199 4-51 (143)
70 1ixz_A ATP-dependent metallopr 97.3 0.005 1.7E-07 59.7 16.1 176 150-347 12-221 (254)
71 3t15_A Ribulose bisphosphate c 97.3 0.0013 4.6E-08 65.5 11.2 27 174-200 35-61 (293)
72 3m6a_A ATP-dependent protease 97.3 0.0013 4.5E-08 71.5 11.7 157 155-323 82-266 (543)
73 3pxi_A Negative regulator of g 97.2 0.00022 7.5E-09 81.1 5.7 149 154-323 491-675 (758)
74 1iy2_A ATP-dependent metallopr 97.2 0.0026 8.9E-08 62.7 12.7 176 150-347 36-245 (278)
75 3cf2_A TER ATPase, transitiona 97.2 0.00086 3E-08 75.5 10.0 173 153-347 203-407 (806)
76 2x8a_A Nuclear valosin-contain 97.2 0.0064 2.2E-07 59.8 15.0 152 152-324 8-192 (274)
77 1ojl_A Transcriptional regulat 97.2 0.00067 2.3E-08 68.0 7.6 46 155-200 3-50 (304)
78 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0009 3.1E-08 76.1 9.2 103 154-266 458-569 (758)
79 2dhr_A FTSH; AAA+ protein, hex 97.1 0.0044 1.5E-07 66.2 13.2 172 151-347 28-236 (499)
80 2r44_A Uncharacterized protein 97.0 0.00073 2.5E-08 68.6 6.7 45 154-200 27-71 (331)
81 3io5_A Recombination and repai 97.0 0.0032 1.1E-07 62.5 10.7 86 176-266 29-123 (333)
82 1n0w_A DNA repair protein RAD5 96.9 0.0055 1.9E-07 58.7 11.4 90 174-264 23-129 (243)
83 3hr8_A Protein RECA; alpha and 96.8 0.0044 1.5E-07 63.2 10.4 85 174-265 60-150 (356)
84 2cvh_A DNA repair and recombin 96.8 0.0076 2.6E-07 56.7 11.3 51 174-230 19-69 (220)
85 1v5w_A DMC1, meiotic recombina 96.8 0.0061 2.1E-07 62.1 11.2 90 174-264 121-229 (343)
86 1qvr_A CLPB protein; coiled co 96.8 0.0015 5.1E-08 75.2 7.0 60 155-216 559-627 (854)
87 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0011 3.9E-08 66.0 4.9 69 175-265 123-193 (331)
88 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0025 8.7E-08 60.6 6.9 47 175-225 23-69 (235)
89 1xp8_A RECA protein, recombina 96.6 0.0072 2.5E-07 61.9 10.0 84 174-264 73-162 (366)
90 1ypw_A Transitional endoplasmi 96.6 0.0044 1.5E-07 70.6 8.9 151 153-324 203-386 (806)
91 2zr9_A Protein RECA, recombina 96.5 0.0074 2.5E-07 61.6 9.7 83 174-264 60-149 (349)
92 2i1q_A DNA repair and recombin 96.5 0.0078 2.7E-07 60.7 9.8 90 174-264 97-214 (322)
93 2z43_A DNA repair and recombin 96.5 0.0078 2.7E-07 60.8 9.5 90 174-264 106-213 (324)
94 2qgz_A Helicase loader, putati 96.5 0.0034 1.2E-07 63.0 6.5 89 159-265 133-225 (308)
95 1jr3_D DNA polymerase III, del 96.5 0.018 6.2E-07 58.5 12.0 159 173-353 16-184 (343)
96 2kjq_A DNAA-related protein; s 96.4 0.0036 1.2E-07 55.4 5.7 40 174-215 35-74 (149)
97 1u94_A RECA protein, recombina 96.4 0.0092 3.1E-07 60.9 9.0 84 174-264 62-151 (356)
98 3lda_A DNA repair protein RAD5 96.3 0.0093 3.2E-07 61.9 9.1 89 175-264 178-283 (400)
99 2px0_A Flagellar biosynthesis 96.2 0.018 6.3E-07 57.2 10.0 87 174-263 104-191 (296)
100 4a74_A DNA repair and recombin 96.0 0.026 9.1E-07 53.3 9.9 91 174-265 24-136 (231)
101 1rz3_A Hypothetical protein rb 96.0 0.0074 2.5E-07 56.3 5.8 44 158-201 2-48 (201)
102 2bjv_A PSP operon transcriptio 96.0 0.006 2E-07 59.6 5.3 61 154-216 6-68 (265)
103 3dm5_A SRP54, signal recogniti 95.8 0.06 2.1E-06 56.2 12.2 29 174-202 99-127 (443)
104 2dr3_A UPF0273 protein PH0284; 95.8 0.038 1.3E-06 52.8 10.0 39 175-215 23-61 (247)
105 3fwy_A Light-independent proto 95.8 0.0077 2.6E-07 60.4 5.1 41 173-215 46-86 (314)
106 3bh0_A DNAB-like replicative h 95.8 0.057 1.9E-06 54.1 11.5 52 174-229 67-118 (315)
107 1g8p_A Magnesium-chelatase 38 95.7 0.0053 1.8E-07 62.5 3.6 50 151-200 21-70 (350)
108 3c8u_A Fructokinase; YP_612366 95.7 0.0098 3.4E-07 55.7 5.2 41 161-201 6-48 (208)
109 1pzn_A RAD51, DNA repair and r 95.6 0.029 1E-06 57.1 8.8 58 174-232 130-191 (349)
110 1qhx_A CPT, protein (chloramph 95.5 0.0073 2.5E-07 54.8 3.6 25 176-200 4-28 (178)
111 2xxa_A Signal recognition part 95.5 0.094 3.2E-06 54.9 12.3 89 174-263 99-192 (433)
112 2ehv_A Hypothetical protein PH 95.5 0.028 9.5E-07 53.9 7.7 39 174-214 29-68 (251)
113 1u0j_A DNA replication protein 95.5 0.023 7.8E-07 55.1 6.9 37 163-199 90-128 (267)
114 3kl4_A SRP54, signal recogniti 95.4 0.073 2.5E-06 55.6 11.1 57 174-232 96-153 (433)
115 3kb2_A SPBC2 prophage-derived 95.4 0.0091 3.1E-07 53.7 3.6 25 176-200 2-26 (173)
116 2b8t_A Thymidine kinase; deoxy 95.4 0.0091 3.1E-07 56.6 3.6 112 174-293 11-127 (223)
117 1g5t_A COB(I)alamin adenosyltr 95.4 0.018 6.1E-07 53.1 5.5 115 176-293 29-164 (196)
118 3ice_A Transcription terminati 95.3 0.025 8.4E-07 57.7 6.8 97 165-265 163-272 (422)
119 3cmu_A Protein RECA, recombina 95.3 0.035 1.2E-06 68.1 9.3 84 174-264 1426-1515(2050)
120 4akg_A Glutathione S-transfera 95.2 0.1 3.5E-06 66.2 13.4 79 176-264 1268-1346(2695)
121 1sky_E F1-ATPase, F1-ATP synth 95.2 0.041 1.4E-06 57.7 8.4 88 176-264 152-255 (473)
122 3lw7_A Adenylate kinase relate 95.2 0.011 3.6E-07 53.3 3.4 22 176-198 2-23 (179)
123 1ly1_A Polynucleotide kinase; 95.2 0.012 4E-07 53.5 3.6 22 176-197 3-24 (181)
124 3vaa_A Shikimate kinase, SK; s 95.2 0.012 4.2E-07 54.6 3.8 27 174-200 24-50 (199)
125 3uie_A Adenylyl-sulfate kinase 95.1 0.014 4.8E-07 54.2 4.1 29 172-200 22-50 (200)
126 3tqc_A Pantothenate kinase; bi 95.1 0.083 2.9E-06 52.9 9.9 42 174-215 91-132 (321)
127 2rhm_A Putative kinase; P-loop 95.1 0.015 5.1E-07 53.4 4.2 27 174-200 4-30 (193)
128 2j37_W Signal recognition part 95.1 0.18 6.2E-06 53.7 13.0 38 174-213 100-137 (504)
129 1zp6_A Hypothetical protein AT 95.1 0.014 4.7E-07 53.7 3.8 25 174-198 8-32 (191)
130 2hf9_A Probable hydrogenase ni 95.1 0.02 6.8E-07 54.1 5.0 39 163-201 26-64 (226)
131 1vma_A Cell division protein F 95.0 0.068 2.3E-06 53.2 9.1 87 174-264 103-196 (306)
132 3trf_A Shikimate kinase, SK; a 95.0 0.014 4.6E-07 53.4 3.7 26 175-200 5-30 (185)
133 2yvu_A Probable adenylyl-sulfa 95.0 0.016 5.6E-07 53.0 4.2 29 173-201 11-39 (186)
134 4eun_A Thermoresistant glucoki 95.0 0.014 4.9E-07 54.2 3.8 27 173-199 27-53 (200)
135 1nks_A Adenylate kinase; therm 94.9 0.016 5.4E-07 53.1 3.8 26 176-201 2-27 (194)
136 1kag_A SKI, shikimate kinase I 94.9 0.013 4.3E-07 52.9 3.0 25 176-200 5-29 (173)
137 3hws_A ATP-dependent CLP prote 94.9 0.025 8.7E-07 57.9 5.6 45 156-200 17-76 (363)
138 3nbx_X ATPase RAVA; AAA+ ATPas 94.9 0.013 4.6E-07 62.5 3.5 45 154-200 22-66 (500)
139 1kgd_A CASK, peripheral plasma 94.8 0.017 5.8E-07 52.7 3.7 26 175-200 5-30 (180)
140 1j8m_F SRP54, signal recogniti 94.8 0.16 5.6E-06 50.2 11.2 88 175-264 98-190 (297)
141 3t61_A Gluconokinase; PSI-biol 94.8 0.015 5.3E-07 54.0 3.5 26 175-200 18-43 (202)
142 1kht_A Adenylate kinase; phosp 94.8 0.018 6E-07 52.8 3.6 26 176-201 4-29 (192)
143 3iij_A Coilin-interacting nucl 94.7 0.016 5.5E-07 52.7 3.2 26 175-200 11-36 (180)
144 1odf_A YGR205W, hypothetical 3 94.7 0.036 1.2E-06 54.9 5.9 55 173-227 29-84 (290)
145 2wsm_A Hydrogenase expression/ 94.7 0.023 7.9E-07 53.4 4.4 41 160-200 15-55 (221)
146 2c95_A Adenylate kinase 1; tra 94.7 0.022 7.5E-07 52.4 4.1 27 174-200 8-34 (196)
147 1gvn_B Zeta; postsegregational 94.6 0.029 1E-06 55.4 5.2 26 174-199 32-57 (287)
148 3tau_A Guanylate kinase, GMP k 94.6 0.02 6.8E-07 53.6 3.7 28 173-200 6-33 (208)
149 1knq_A Gluconate kinase; ALFA/ 94.6 0.024 8.4E-07 51.2 4.2 25 175-199 8-32 (175)
150 1tev_A UMP-CMP kinase; ploop, 94.6 0.021 7.3E-07 52.4 3.9 26 175-200 3-28 (196)
151 2ze6_A Isopentenyl transferase 94.6 0.021 7E-07 55.4 3.8 25 176-200 2-26 (253)
152 2ga8_A Hypothetical 39.9 kDa p 94.6 0.039 1.3E-06 55.8 5.8 43 158-200 3-49 (359)
153 2qor_A Guanylate kinase; phosp 94.6 0.017 5.9E-07 53.8 3.1 27 174-200 11-37 (204)
154 1y63_A LMAJ004144AAA protein; 94.5 0.025 8.5E-07 51.8 4.1 25 174-198 9-33 (184)
155 1ukz_A Uridylate kinase; trans 94.5 0.025 8.5E-07 52.5 4.1 26 174-199 14-39 (203)
156 3tlx_A Adenylate kinase 2; str 94.5 0.042 1.4E-06 52.8 5.8 28 173-200 27-54 (243)
157 1ls1_A Signal recognition part 94.5 0.12 4E-06 51.2 9.2 88 174-263 97-189 (295)
158 1um8_A ATP-dependent CLP prote 94.5 0.035 1.2E-06 57.1 5.6 26 175-200 72-97 (376)
159 1via_A Shikimate kinase; struc 94.5 0.018 6.3E-07 52.1 3.0 25 176-200 5-29 (175)
160 3e70_C DPA, signal recognition 94.5 0.35 1.2E-05 48.5 12.8 58 173-232 127-185 (328)
161 2plr_A DTMP kinase, probable t 94.5 0.025 8.4E-07 52.8 4.0 27 175-201 4-30 (213)
162 2jaq_A Deoxyguanosine kinase; 94.5 0.022 7.6E-07 52.7 3.6 24 177-200 2-25 (205)
163 3tr0_A Guanylate kinase, GMP k 94.4 0.023 8E-07 52.7 3.7 25 175-199 7-31 (205)
164 2bwj_A Adenylate kinase 5; pho 94.4 0.024 8.3E-07 52.2 3.8 26 175-200 12-37 (199)
165 1uf9_A TT1252 protein; P-loop, 94.4 0.026 8.8E-07 52.3 4.0 26 173-198 6-31 (203)
166 1zuh_A Shikimate kinase; alpha 94.4 0.024 8.1E-07 50.9 3.6 26 175-200 7-32 (168)
167 3cm0_A Adenylate kinase; ATP-b 94.4 0.026 9E-07 51.4 3.9 26 175-200 4-29 (186)
168 3umf_A Adenylate kinase; rossm 94.3 0.029 9.9E-07 52.9 4.1 28 173-200 27-54 (217)
169 2j41_A Guanylate kinase; GMP, 94.3 0.026 8.8E-07 52.5 3.7 25 175-199 6-30 (207)
170 3asz_A Uridine kinase; cytidin 94.3 0.03 1E-06 52.3 4.2 27 174-200 5-31 (211)
171 2iyv_A Shikimate kinase, SK; t 94.3 0.02 6.7E-07 52.3 2.8 25 176-200 3-27 (184)
172 2cdn_A Adenylate kinase; phosp 94.3 0.029 1E-06 52.0 4.1 27 174-200 19-45 (201)
173 2vli_A Antibiotic resistance p 94.3 0.018 6.1E-07 52.4 2.5 26 175-200 5-30 (183)
174 1uj2_A Uridine-cytidine kinase 94.3 0.028 9.5E-07 54.3 4.0 28 173-200 20-47 (252)
175 1ex7_A Guanylate kinase; subst 94.3 0.022 7.4E-07 52.4 2.9 25 176-200 2-26 (186)
176 1qf9_A UMP/CMP kinase, protein 94.3 0.03 1E-06 51.3 4.0 26 175-200 6-31 (194)
177 3aez_A Pantothenate kinase; tr 94.3 0.1 3.4E-06 52.2 8.1 43 173-215 88-130 (312)
178 3cf2_A TER ATPase, transitiona 94.2 0.032 1.1E-06 62.8 4.9 173 152-346 475-682 (806)
179 3a4m_A L-seryl-tRNA(SEC) kinas 94.2 0.028 9.6E-07 54.7 3.9 26 175-200 4-29 (260)
180 3a00_A Guanylate kinase, GMP k 94.2 0.022 7.6E-07 52.2 3.0 25 176-200 2-26 (186)
181 4a1f_A DNAB helicase, replicat 94.2 0.18 6E-06 50.9 9.8 51 175-229 46-96 (338)
182 1e6c_A Shikimate kinase; phosp 94.2 0.023 7.9E-07 51.1 3.0 25 176-200 3-27 (173)
183 2bdt_A BH3686; alpha-beta prot 94.2 0.028 9.5E-07 51.5 3.5 22 176-197 3-24 (189)
184 1nn5_A Similar to deoxythymidy 94.2 0.032 1.1E-06 52.1 4.1 28 174-201 8-35 (215)
185 1aky_A Adenylate kinase; ATP:A 94.1 0.03 1E-06 52.7 3.8 27 174-200 3-29 (220)
186 2wwf_A Thymidilate kinase, put 94.1 0.032 1.1E-06 52.1 3.9 32 175-207 10-41 (212)
187 1cke_A CK, MSSA, protein (cyti 94.1 0.029 9.9E-07 53.0 3.7 25 176-200 6-30 (227)
188 2ck3_D ATP synthase subunit be 94.1 0.22 7.6E-06 52.1 10.5 99 165-264 142-263 (482)
189 3ney_A 55 kDa erythrocyte memb 94.1 0.032 1.1E-06 51.7 3.7 27 174-200 18-44 (197)
190 2z0h_A DTMP kinase, thymidylat 94.0 0.081 2.8E-06 48.5 6.5 25 177-201 2-26 (197)
191 1xjc_A MOBB protein homolog; s 94.0 0.043 1.5E-06 49.4 4.4 29 174-202 3-31 (169)
192 2p5t_B PEZT; postsegregational 94.0 0.042 1.4E-06 53.1 4.7 27 174-200 31-57 (253)
193 2bbw_A Adenylate kinase 4, AK4 94.0 0.033 1.1E-06 53.6 3.8 27 174-200 26-52 (246)
194 2if2_A Dephospho-COA kinase; a 94.0 0.031 1.1E-06 51.9 3.5 22 176-197 2-23 (204)
195 1zak_A Adenylate kinase; ATP:A 93.9 0.032 1.1E-06 52.7 3.5 27 174-200 4-30 (222)
196 3jvv_A Twitching mobility prot 93.9 0.015 5E-07 59.4 1.2 111 174-294 122-233 (356)
197 1zd8_A GTP:AMP phosphotransfer 93.9 0.033 1.1E-06 52.8 3.7 26 175-200 7-32 (227)
198 1lvg_A Guanylate kinase, GMP k 93.9 0.026 8.8E-07 52.4 2.8 26 175-200 4-29 (198)
199 2qt1_A Nicotinamide riboside k 93.9 0.036 1.2E-06 51.7 3.8 26 174-199 20-45 (207)
200 2ffh_A Protein (FFH); SRP54, s 93.9 0.18 6.2E-06 52.5 9.4 87 174-263 97-189 (425)
201 2pt5_A Shikimate kinase, SK; a 93.9 0.035 1.2E-06 49.7 3.6 24 177-200 2-25 (168)
202 3cmw_A Protein RECA, recombina 93.9 0.11 3.7E-06 63.1 8.6 84 174-264 1430-1519(1706)
203 3cmw_A Protein RECA, recombina 93.8 0.12 4.2E-06 62.6 9.0 86 174-266 731-822 (1706)
204 2pbr_A DTMP kinase, thymidylat 93.8 0.035 1.2E-06 50.8 3.6 24 177-200 2-25 (195)
205 1ye8_A Protein THEP1, hypothet 93.8 0.036 1.2E-06 50.5 3.6 24 177-200 2-25 (178)
206 4gp7_A Metallophosphoesterase; 93.8 0.03 1E-06 50.5 3.0 22 174-195 8-29 (171)
207 1tue_A Replication protein E1; 93.7 0.06 2.1E-06 49.9 4.8 38 163-200 45-83 (212)
208 1fx0_B ATP synthase beta chain 93.7 0.18 6.2E-06 53.0 9.1 98 166-264 155-276 (498)
209 2q6t_A DNAB replication FORK h 93.7 0.29 9.8E-06 51.5 10.8 51 175-228 200-250 (444)
210 3cmu_A Protein RECA, recombina 93.7 0.13 4.3E-06 63.3 8.9 84 174-264 382-471 (2050)
211 1gtv_A TMK, thymidylate kinase 93.7 0.025 8.6E-07 52.9 2.3 26 176-201 1-26 (214)
212 3end_A Light-independent proto 93.7 0.079 2.7E-06 52.7 6.1 44 172-217 38-81 (307)
213 3l0o_A Transcription terminati 93.7 0.047 1.6E-06 55.6 4.3 51 165-216 164-216 (427)
214 3fb4_A Adenylate kinase; psych 93.6 0.041 1.4E-06 51.6 3.6 24 177-200 2-25 (216)
215 4e22_A Cytidylate kinase; P-lo 93.6 0.044 1.5E-06 53.0 3.9 27 174-200 26-52 (252)
216 3gmt_A Adenylate kinase; ssgci 93.6 0.23 8E-06 46.9 8.8 25 176-200 9-33 (230)
217 3bgw_A DNAB-like replicative h 93.5 0.26 8.8E-06 51.8 10.0 50 175-228 197-246 (444)
218 2v54_A DTMP kinase, thymidylat 93.5 0.04 1.4E-06 51.0 3.4 25 175-199 4-28 (204)
219 1jjv_A Dephospho-COA kinase; P 93.5 0.04 1.4E-06 51.3 3.4 22 176-197 3-24 (206)
220 1m7g_A Adenylylsulfate kinase; 93.5 0.05 1.7E-06 50.9 4.0 28 173-200 23-50 (211)
221 2jeo_A Uridine-cytidine kinase 93.4 0.049 1.7E-06 52.3 3.9 26 174-199 24-49 (245)
222 1q57_A DNA primase/helicase; d 93.4 0.29 9.9E-06 52.4 10.4 57 174-233 241-298 (503)
223 1znw_A Guanylate kinase, GMP k 93.4 0.047 1.6E-06 51.0 3.6 27 174-200 19-45 (207)
224 2yhs_A FTSY, cell division pro 93.4 0.32 1.1E-05 51.4 10.2 42 174-218 292-333 (503)
225 2f1r_A Molybdopterin-guanine d 93.4 0.047 1.6E-06 49.3 3.5 36 176-211 3-38 (171)
226 2zts_A Putative uncharacterize 93.4 0.16 5.4E-06 48.4 7.5 49 175-226 30-78 (251)
227 1z6g_A Guanylate kinase; struc 93.4 0.039 1.3E-06 52.1 3.0 26 174-199 22-47 (218)
228 3k1j_A LON protease, ATP-depen 93.4 0.043 1.5E-06 60.4 3.8 50 150-201 37-86 (604)
229 2grj_A Dephospho-COA kinase; T 93.4 0.048 1.6E-06 50.4 3.5 26 174-199 11-36 (192)
230 3dl0_A Adenylate kinase; phosp 93.3 0.046 1.6E-06 51.3 3.5 24 177-200 2-25 (216)
231 2r6a_A DNAB helicase, replicat 93.3 0.25 8.7E-06 52.1 9.5 50 175-227 203-252 (454)
232 1rj9_A FTSY, signal recognitio 93.3 0.052 1.8E-06 54.1 3.9 28 174-201 101-128 (304)
233 2pez_A Bifunctional 3'-phospho 93.3 0.058 2E-06 48.9 4.0 27 174-200 4-30 (179)
234 1s96_A Guanylate kinase, GMP k 93.3 0.052 1.8E-06 51.3 3.7 27 174-200 15-41 (219)
235 1g41_A Heat shock protein HSLU 93.1 0.057 1.9E-06 56.5 4.1 47 155-201 16-76 (444)
236 1htw_A HI0065; nucleotide-bind 93.1 0.063 2.2E-06 47.8 3.8 27 173-199 31-57 (158)
237 1cr0_A DNA primase/helicase; R 93.0 0.18 6E-06 49.8 7.4 53 174-229 34-86 (296)
238 2f6r_A COA synthase, bifunctio 93.0 0.06 2E-06 53.0 3.9 24 174-197 74-97 (281)
239 1vht_A Dephospho-COA kinase; s 93.0 0.063 2.1E-06 50.4 3.9 23 175-197 4-26 (218)
240 3p32_A Probable GTPase RV1496/ 92.9 0.13 4.6E-06 52.3 6.4 39 163-201 65-105 (355)
241 3io3_A DEHA2D07832P; chaperone 92.8 0.14 4.6E-06 52.0 6.3 48 170-219 13-62 (348)
242 1ak2_A Adenylate kinase isoenz 92.8 0.072 2.5E-06 50.7 4.0 26 175-200 16-41 (233)
243 3ake_A Cytidylate kinase; CMP 92.8 0.066 2.3E-06 49.6 3.6 24 177-200 4-27 (208)
244 3r20_A Cytidylate kinase; stru 92.7 0.068 2.3E-06 50.9 3.7 26 175-200 9-34 (233)
245 1e4v_A Adenylate kinase; trans 92.7 0.069 2.4E-06 50.0 3.7 24 177-200 2-25 (214)
246 3be4_A Adenylate kinase; malar 92.7 0.069 2.4E-06 50.2 3.7 25 176-200 6-30 (217)
247 3d3q_A TRNA delta(2)-isopenten 92.7 0.068 2.3E-06 53.8 3.7 25 176-200 8-32 (340)
248 3nwj_A ATSK2; P loop, shikimat 92.7 0.06 2.1E-06 51.9 3.2 26 175-200 48-73 (250)
249 3sr0_A Adenylate kinase; phosp 92.6 0.072 2.5E-06 49.7 3.6 24 177-200 2-25 (206)
250 3iqw_A Tail-anchored protein t 92.6 0.15 5.1E-06 51.4 6.2 48 171-220 12-59 (334)
251 1np6_A Molybdopterin-guanine d 92.6 0.11 3.9E-06 46.9 4.8 27 175-201 6-32 (174)
252 4eaq_A DTMP kinase, thymidylat 92.6 0.15 5.2E-06 48.3 6.0 28 174-201 25-52 (229)
253 3upu_A ATP-dependent DNA helic 92.6 0.19 6.6E-06 53.1 7.4 44 158-202 29-72 (459)
254 2xb4_A Adenylate kinase; ATP-b 92.6 0.071 2.4E-06 50.4 3.6 24 177-200 2-25 (223)
255 1sq5_A Pantothenate kinase; P- 92.5 0.13 4.6E-06 51.1 5.7 28 173-200 78-105 (308)
256 3exa_A TRNA delta(2)-isopenten 92.5 0.073 2.5E-06 52.8 3.6 25 175-199 3-27 (322)
257 3b9q_A Chloroplast SRP recepto 92.4 0.079 2.7E-06 52.7 3.9 28 174-201 99-126 (302)
258 1zu4_A FTSY; GTPase, signal re 92.4 0.13 4.3E-06 51.7 5.4 39 174-214 104-142 (320)
259 3lv8_A DTMP kinase, thymidylat 92.4 0.21 7.3E-06 47.6 6.7 37 175-212 27-63 (236)
260 3foz_A TRNA delta(2)-isopenten 92.4 0.09 3.1E-06 52.1 4.1 26 174-199 9-34 (316)
261 3crm_A TRNA delta(2)-isopenten 92.4 0.075 2.6E-06 53.1 3.6 26 175-200 5-30 (323)
262 3lnc_A Guanylate kinase, GMP k 92.3 0.052 1.8E-06 51.6 2.3 25 175-199 27-52 (231)
263 3a8t_A Adenylate isopentenyltr 92.3 0.068 2.3E-06 53.7 3.2 26 174-199 39-64 (339)
264 2c61_A A-type ATP synthase non 92.2 0.14 4.7E-06 53.7 5.4 99 166-264 142-259 (469)
265 4edh_A DTMP kinase, thymidylat 92.2 0.26 9E-06 46.1 6.9 32 175-207 6-37 (213)
266 2i3b_A HCR-ntpase, human cance 92.1 0.071 2.4E-06 49.0 2.9 25 176-200 2-26 (189)
267 1ltq_A Polynucleotide kinase; 92.1 0.085 2.9E-06 52.2 3.6 23 176-198 3-25 (301)
268 4gzl_A RAS-related C3 botulinu 92.1 0.094 3.2E-06 48.6 3.7 37 163-199 18-54 (204)
269 4tmk_A Protein (thymidylate ki 92.0 0.27 9.2E-06 46.0 6.8 53 175-228 3-55 (213)
270 1a7j_A Phosphoribulokinase; tr 92.0 0.05 1.7E-06 53.8 1.8 42 174-217 4-45 (290)
271 1yrb_A ATP(GTP)binding protein 92.0 0.14 4.6E-06 49.5 4.9 27 174-200 13-39 (262)
272 2onk_A Molybdate/tungstate ABC 91.9 0.089 3E-06 50.4 3.4 24 176-199 25-48 (240)
273 3zvl_A Bifunctional polynucleo 91.8 0.075 2.5E-06 55.5 2.9 27 173-199 256-282 (416)
274 3tif_A Uncharacterized ABC tra 91.8 0.082 2.8E-06 50.5 3.0 26 174-199 30-55 (235)
275 1cp2_A CP2, nitrogenase iron p 91.8 0.19 6.6E-06 48.6 5.8 39 176-216 2-40 (269)
276 3ld9_A DTMP kinase, thymidylat 91.8 0.19 6.6E-06 47.4 5.5 56 172-228 18-74 (223)
277 3vr4_D V-type sodium ATPase su 91.7 0.33 1.1E-05 50.6 7.6 99 166-264 141-258 (465)
278 2og2_A Putative signal recogni 91.7 0.11 3.7E-06 53.0 3.9 28 174-201 156-183 (359)
279 2r8r_A Sensor protein; KDPD, P 91.7 0.25 8.5E-06 46.5 6.1 41 176-218 7-47 (228)
280 1g8f_A Sulfate adenylyltransfe 91.7 0.17 5.8E-06 53.9 5.5 46 156-201 374-421 (511)
281 2ocp_A DGK, deoxyguanosine kin 91.6 0.12 4E-06 49.4 3.9 26 175-200 2-27 (241)
282 1oix_A RAS-related protein RAB 91.6 0.11 3.6E-06 47.6 3.5 25 175-199 29-53 (191)
283 2ged_A SR-beta, signal recogni 91.6 0.2 6.9E-06 45.5 5.3 26 174-199 47-72 (193)
284 2pcj_A ABC transporter, lipopr 91.5 0.086 2.9E-06 49.9 2.8 25 175-199 30-54 (224)
285 2afh_E Nitrogenase iron protei 91.5 0.22 7.6E-06 48.9 5.9 40 175-216 2-41 (289)
286 3gqb_B V-type ATP synthase bet 91.4 0.35 1.2E-05 50.3 7.4 99 166-264 137-261 (464)
287 1q3t_A Cytidylate kinase; nucl 91.3 0.13 4.5E-06 48.9 4.0 27 174-200 15-41 (236)
288 2cbz_A Multidrug resistance-as 91.3 0.098 3.4E-06 50.0 3.0 27 174-200 30-56 (237)
289 2v9p_A Replication protein E1; 91.3 0.12 4.1E-06 51.3 3.6 27 173-199 124-150 (305)
290 2eyu_A Twitching motility prot 91.2 0.13 4.5E-06 49.9 3.8 110 173-294 23-135 (261)
291 2qmh_A HPR kinase/phosphorylas 91.2 0.091 3.1E-06 48.4 2.4 25 175-199 34-58 (205)
292 1b0u_A Histidine permease; ABC 91.2 0.1 3.5E-06 50.7 3.0 26 174-199 31-56 (262)
293 1tf7_A KAIC; homohexamer, hexa 91.1 0.38 1.3E-05 51.8 7.8 39 174-214 280-318 (525)
294 2dyk_A GTP-binding protein; GT 91.1 0.14 4.7E-06 44.8 3.6 24 176-199 2-25 (161)
295 3b85_A Phosphate starvation-in 91.1 0.083 2.8E-06 49.4 2.2 24 175-198 22-45 (208)
296 2wji_A Ferrous iron transport 91.1 0.13 4.6E-06 45.6 3.5 23 176-198 4-26 (165)
297 3kjh_A CO dehydrogenase/acetyl 91.1 0.27 9.3E-06 46.8 5.9 41 178-220 3-43 (254)
298 1nlf_A Regulatory protein REPA 91.0 0.11 3.9E-06 50.8 3.2 27 174-200 29-55 (279)
299 3hjn_A DTMP kinase, thymidylat 91.0 0.37 1.3E-05 44.5 6.5 50 177-228 2-51 (197)
300 2fz4_A DNA repair protein RAD2 91.0 0.92 3.1E-05 43.0 9.5 39 158-199 94-132 (237)
301 2f9l_A RAB11B, member RAS onco 91.0 0.12 4E-06 47.6 3.1 24 176-199 6-29 (199)
302 2zu0_C Probable ATP-dependent 90.9 0.13 4.5E-06 50.1 3.5 25 174-198 45-69 (267)
303 3eph_A TRNA isopentenyltransfe 90.9 0.15 5.2E-06 52.4 4.1 25 176-200 3-27 (409)
304 1mv5_A LMRA, multidrug resista 90.9 0.12 4.1E-06 49.6 3.2 26 174-199 27-52 (243)
305 2olj_A Amino acid ABC transpor 90.9 0.12 3.9E-06 50.3 3.0 26 174-199 49-74 (263)
306 2d2e_A SUFC protein; ABC-ATPas 90.9 0.12 4.2E-06 49.7 3.2 24 175-198 29-52 (250)
307 3cr8_A Sulfate adenylyltranfer 90.9 0.25 8.4E-06 53.4 5.9 45 157-201 349-395 (552)
308 3bfv_A CAPA1, CAPB2, membrane 90.8 0.36 1.2E-05 47.0 6.6 52 161-214 64-120 (271)
309 3gfo_A Cobalt import ATP-bindi 90.8 0.1 3.6E-06 51.0 2.7 25 175-199 34-58 (275)
310 3f9v_A Minichromosome maintena 90.8 0.077 2.6E-06 58.1 1.9 45 155-199 296-351 (595)
311 3mfy_A V-type ATP synthase alp 90.8 1 3.4E-05 48.0 10.2 96 165-264 216-334 (588)
312 2orw_A Thymidine kinase; TMTK, 90.7 0.31 1.1E-05 44.4 5.7 26 176-201 4-29 (184)
313 1svm_A Large T antigen; AAA+ f 90.7 0.14 4.9E-06 52.4 3.7 27 173-199 167-193 (377)
314 2ce2_X GTPase HRAS; signaling 90.7 0.14 4.8E-06 44.9 3.2 23 177-199 5-27 (166)
315 3cio_A ETK, tyrosine-protein k 90.7 0.37 1.3E-05 47.7 6.6 42 172-215 101-143 (299)
316 1moz_A ARL1, ADP-ribosylation 90.7 0.19 6.4E-06 45.2 4.1 34 164-197 6-40 (183)
317 2zej_A Dardarin, leucine-rich 90.6 0.12 4.1E-06 46.9 2.7 21 177-197 4-24 (184)
318 1zj6_A ADP-ribosylation factor 90.6 0.26 9E-06 44.5 5.1 34 164-198 6-39 (187)
319 1ji0_A ABC transporter; ATP bi 90.6 0.11 3.9E-06 49.6 2.7 26 174-199 31-56 (240)
320 2ghi_A Transport protein; mult 90.6 0.13 4.3E-06 50.0 3.0 26 174-199 45-70 (260)
321 4g1u_C Hemin import ATP-bindin 90.6 0.11 3.8E-06 50.5 2.7 27 174-200 36-62 (266)
322 1vpl_A ABC transporter, ATP-bi 90.6 0.13 4.4E-06 49.8 3.0 26 174-199 40-65 (256)
323 1g6h_A High-affinity branched- 90.6 0.11 3.9E-06 50.2 2.7 26 174-199 32-57 (257)
324 2pze_A Cystic fibrosis transme 90.5 0.12 4E-06 49.2 2.7 27 174-200 33-59 (229)
325 2ixe_A Antigen peptide transpo 90.5 0.13 4.5E-06 50.2 3.0 26 174-199 44-69 (271)
326 3vr4_A V-type sodium ATPase ca 90.5 0.87 3E-05 48.6 9.4 95 166-264 222-339 (600)
327 2ff7_A Alpha-hemolysin translo 90.4 0.12 4.1E-06 49.7 2.7 25 175-199 35-59 (247)
328 4dzz_A Plasmid partitioning pr 90.4 0.28 9.6E-06 45.1 5.2 43 176-220 2-45 (206)
329 1sgw_A Putative ABC transporte 90.4 0.1 3.5E-06 49.0 2.1 25 175-199 35-59 (214)
330 1z2a_A RAS-related protein RAB 90.3 0.15 5.2E-06 44.9 3.1 25 175-199 5-29 (168)
331 1fzq_A ADP-ribosylation factor 90.2 0.23 7.8E-06 44.8 4.3 26 173-198 14-39 (181)
332 2yz2_A Putative ABC transporte 90.2 0.14 4.8E-06 49.8 3.0 26 174-199 32-57 (266)
333 2wjg_A FEOB, ferrous iron tran 90.2 0.18 6E-06 45.7 3.5 24 175-198 7-30 (188)
334 3sop_A Neuronal-specific septi 90.1 0.17 5.7E-06 49.4 3.5 24 177-200 4-27 (270)
335 2ck3_A ATP synthase subunit al 90.1 0.44 1.5E-05 50.3 6.8 99 166-264 152-272 (510)
336 3zq6_A Putative arsenical pump 90.1 0.37 1.3E-05 48.3 6.1 45 175-221 14-58 (324)
337 2r9v_A ATP synthase subunit al 90.1 0.38 1.3E-05 50.7 6.2 95 166-264 165-277 (515)
338 2qe7_A ATP synthase subunit al 90.0 0.68 2.3E-05 48.7 8.1 95 166-264 152-264 (502)
339 2qi9_C Vitamin B12 import ATP- 90.0 0.14 4.7E-06 49.4 2.7 26 175-200 26-51 (249)
340 2woj_A ATPase GET3; tail-ancho 89.9 0.51 1.8E-05 47.9 7.0 48 172-221 15-64 (354)
341 2lkc_A Translation initiation 89.9 0.19 6.3E-06 44.9 3.4 26 173-198 6-31 (178)
342 2axn_A 6-phosphofructo-2-kinas 89.9 0.2 6.8E-06 53.8 4.1 29 173-201 33-61 (520)
343 1nrj_B SR-beta, signal recogni 89.9 0.2 6.9E-06 46.6 3.7 27 173-199 10-36 (218)
344 3con_A GTPase NRAS; structural 89.9 0.17 5.8E-06 45.9 3.1 24 176-199 22-45 (190)
345 1r8s_A ADP-ribosylation factor 89.9 0.19 6.3E-06 44.2 3.3 23 177-199 2-24 (164)
346 2vp4_A Deoxynucleoside kinase; 89.9 0.13 4.3E-06 48.9 2.3 25 174-198 19-43 (230)
347 2nq2_C Hypothetical ABC transp 89.9 0.14 4.9E-06 49.4 2.7 25 175-199 31-55 (253)
348 1m8p_A Sulfate adenylyltransfe 89.8 0.34 1.2E-05 52.6 5.9 29 173-201 394-422 (573)
349 3la6_A Tyrosine-protein kinase 89.8 0.53 1.8E-05 46.2 6.8 53 161-215 74-131 (286)
350 2ihy_A ABC transporter, ATP-bi 89.8 0.14 4.9E-06 50.1 2.7 27 174-200 46-72 (279)
351 1u8z_A RAS-related protein RAL 89.8 0.18 6.1E-06 44.3 3.1 24 176-199 5-28 (168)
352 2www_A Methylmalonic aciduria 89.8 0.34 1.2E-05 49.1 5.6 27 174-200 73-99 (349)
353 1nij_A Hypothetical protein YJ 89.7 0.16 5.6E-06 50.8 3.1 26 174-199 3-28 (318)
354 3fkq_A NTRC-like two-domain pr 89.7 0.35 1.2E-05 49.6 5.6 61 156-218 112-185 (373)
355 3oaa_A ATP synthase subunit al 89.7 1.3 4.6E-05 46.5 10.0 95 166-264 152-264 (513)
356 2v3c_C SRP54, signal recogniti 89.7 0.12 4.2E-06 54.0 2.2 38 175-214 99-136 (432)
357 1kao_A RAP2A; GTP-binding prot 89.7 0.18 6.3E-06 44.2 3.1 24 176-199 4-27 (167)
358 1m7b_A RND3/RHOE small GTP-bin 89.6 0.19 6.5E-06 45.4 3.2 25 175-199 7-31 (184)
359 3nh6_A ATP-binding cassette SU 89.6 0.15 5.1E-06 50.7 2.7 26 174-199 79-104 (306)
360 1c1y_A RAS-related protein RAP 89.6 0.19 6.5E-06 44.2 3.1 23 177-199 5-27 (167)
361 1f6b_A SAR1; gtpases, N-termin 89.6 0.29 1E-05 44.9 4.5 25 173-197 23-47 (198)
362 2h92_A Cytidylate kinase; ross 89.5 0.18 6.1E-06 47.2 3.1 25 176-200 4-28 (219)
363 1z08_A RAS-related protein RAB 89.5 0.19 6.6E-06 44.4 3.1 24 176-199 7-30 (170)
364 3fdi_A Uncharacterized protein 89.5 0.23 7.8E-06 46.1 3.7 26 176-201 7-32 (201)
365 3cwq_A Para family chromosome 89.5 0.45 1.6E-05 44.2 5.8 43 177-222 2-45 (209)
366 1ek0_A Protein (GTP-binding pr 89.4 0.2 6.7E-06 44.2 3.1 23 177-199 5-27 (170)
367 3kta_A Chromosome segregation 89.4 0.22 7.4E-06 45.0 3.5 25 176-200 27-51 (182)
368 3q72_A GTP-binding protein RAD 89.4 0.18 6.3E-06 44.3 2.9 21 177-197 4-24 (166)
369 2woo_A ATPase GET3; tail-ancho 89.4 0.47 1.6E-05 47.7 6.2 44 172-217 16-59 (329)
370 3tmk_A Thymidylate kinase; pho 89.4 0.62 2.1E-05 43.6 6.6 27 175-201 5-31 (216)
371 3v9p_A DTMP kinase, thymidylat 89.4 0.37 1.3E-05 45.6 5.1 28 174-201 24-51 (227)
372 2nzj_A GTP-binding protein REM 89.4 0.24 8.1E-06 44.0 3.6 24 175-198 4-27 (175)
373 3ihw_A Centg3; RAS, centaurin, 89.4 0.2 6.7E-06 45.5 3.1 25 175-199 20-44 (184)
374 2gj8_A MNME, tRNA modification 89.3 0.2 6.7E-06 44.9 3.1 23 176-198 5-27 (172)
375 1z0j_A RAB-22, RAS-related pro 89.3 0.2 6.9E-06 44.2 3.1 24 176-199 7-30 (170)
376 1g16_A RAS-related protein SEC 89.3 0.21 7.3E-06 44.0 3.2 24 176-199 4-27 (170)
377 3q85_A GTP-binding protein REM 89.3 0.19 6.6E-06 44.3 3.0 21 177-197 4-24 (169)
378 1tq4_A IIGP1, interferon-induc 89.3 0.25 8.4E-06 51.3 4.1 25 174-198 68-92 (413)
379 2fn4_A P23, RAS-related protei 89.2 0.27 9.3E-06 43.8 3.9 26 174-199 8-33 (181)
380 1svi_A GTP-binding protein YSX 89.2 0.25 8.6E-06 44.9 3.7 25 174-198 22-46 (195)
381 1p5z_B DCK, deoxycytidine kina 89.2 0.11 3.7E-06 50.4 1.3 26 174-199 23-48 (263)
382 3fvq_A Fe(3+) IONS import ATP- 89.2 0.22 7.7E-06 50.5 3.6 26 174-199 29-54 (359)
383 2yv5_A YJEQ protein; hydrolase 89.2 0.31 1.1E-05 48.3 4.6 33 163-199 156-188 (302)
384 1wms_A RAB-9, RAB9, RAS-relate 89.1 0.21 7.3E-06 44.5 3.1 25 175-199 7-31 (177)
385 2bbs_A Cystic fibrosis transme 89.1 0.2 6.8E-06 49.4 3.1 26 174-199 63-88 (290)
386 2erx_A GTP-binding protein DI- 89.0 0.21 7E-06 44.2 3.0 23 176-198 4-26 (172)
387 2iwr_A Centaurin gamma 1; ANK 89.0 0.18 6.2E-06 45.1 2.6 24 176-199 8-31 (178)
388 1m2o_B GTP-binding protein SAR 89.0 0.22 7.6E-06 45.4 3.2 25 174-198 22-46 (190)
389 2cjw_A GTP-binding protein GEM 89.0 0.23 7.8E-06 45.4 3.3 23 176-198 7-29 (192)
390 3c5c_A RAS-like protein 12; GD 89.0 0.22 7.4E-06 45.3 3.1 26 174-199 20-45 (187)
391 1r2q_A RAS-related protein RAB 88.9 0.22 7.7E-06 43.8 3.1 24 176-199 7-30 (170)
392 2pjz_A Hypothetical protein ST 88.9 0.18 6.3E-06 48.9 2.7 25 175-199 30-54 (263)
393 1ky3_A GTP-binding protein YPT 88.9 0.27 9.2E-06 43.9 3.7 26 174-199 7-32 (182)
394 4hlc_A DTMP kinase, thymidylat 88.9 0.69 2.4E-05 42.9 6.5 25 176-200 3-27 (205)
395 3geh_A MNME, tRNA modification 88.9 3.6 0.00012 43.2 12.8 88 67-199 161-248 (462)
396 3ug7_A Arsenical pump-driving 88.9 0.52 1.8E-05 47.7 6.2 42 173-216 24-65 (349)
397 2qtf_A Protein HFLX, GTP-bindi 88.8 0.52 1.8E-05 48.1 6.1 25 174-198 178-202 (364)
398 3pqc_A Probable GTP-binding pr 88.8 0.28 9.6E-06 44.4 3.8 25 175-199 23-47 (195)
399 2hxs_A RAB-26, RAS-related pro 88.7 0.21 7E-06 44.6 2.7 24 175-198 6-29 (178)
400 1lw7_A Transcriptional regulat 88.7 0.26 9E-06 50.3 3.8 26 175-200 170-195 (365)
401 1z0f_A RAB14, member RAS oncog 88.7 0.24 8.2E-06 44.1 3.1 25 175-199 15-39 (179)
402 3tui_C Methionine import ATP-b 88.6 0.25 8.5E-06 50.2 3.5 26 174-199 53-78 (366)
403 3tqf_A HPR(Ser) kinase; transf 88.6 0.29 9.8E-06 44.0 3.5 24 175-198 16-39 (181)
404 4b3f_X DNA-binding protein smu 88.6 0.57 2E-05 51.8 6.8 62 161-227 193-254 (646)
405 2bme_A RAB4A, RAS-related prot 88.6 0.25 8.6E-06 44.4 3.2 25 175-199 10-34 (186)
406 2y8e_A RAB-protein 6, GH09086P 88.5 0.25 8.7E-06 43.9 3.2 24 176-199 15-38 (179)
407 3dz8_A RAS-related protein RAB 88.5 0.27 9.1E-06 44.7 3.4 24 176-199 24-47 (191)
408 1bif_A 6-phosphofructo-2-kinas 88.5 0.28 9.5E-06 52.0 4.0 28 174-201 38-65 (469)
409 2cxx_A Probable GTP-binding pr 88.5 0.24 8.1E-06 44.7 3.0 22 177-198 3-24 (190)
410 4dsu_A GTPase KRAS, isoform 2B 88.5 0.25 8.5E-06 44.5 3.1 24 176-199 5-28 (189)
411 3bc1_A RAS-related protein RAB 88.4 0.25 8.5E-06 44.6 3.1 25 175-199 11-35 (195)
412 1upt_A ARL1, ADP-ribosylation 88.4 0.32 1.1E-05 42.9 3.8 25 175-199 7-31 (171)
413 3kkq_A RAS-related protein M-R 88.4 0.26 8.8E-06 44.3 3.1 25 175-199 18-42 (183)
414 2b6h_A ADP-ribosylation factor 88.3 0.25 8.6E-06 45.1 3.1 26 172-197 26-51 (192)
415 3d31_A Sulfate/molybdate ABC t 88.3 0.25 8.6E-06 50.0 3.3 26 174-199 25-50 (348)
416 1mh1_A RAC1; GTP-binding, GTPa 88.3 0.26 8.9E-06 44.2 3.1 24 176-199 6-29 (186)
417 3t5g_A GTP-binding protein RHE 88.3 0.27 9.3E-06 44.0 3.2 25 175-199 6-30 (181)
418 2yyz_A Sugar ABC transporter, 88.3 0.27 9.3E-06 49.9 3.5 26 174-199 28-53 (359)
419 3cbq_A GTP-binding protein REM 88.2 0.2 6.7E-06 46.0 2.3 23 174-196 22-44 (195)
420 2oil_A CATX-8, RAS-related pro 88.2 0.26 8.8E-06 44.8 3.1 25 175-199 25-49 (193)
421 2p67_A LAO/AO transport system 88.2 0.5 1.7E-05 47.7 5.5 29 172-200 53-81 (341)
422 2gks_A Bifunctional SAT/APS ki 88.2 0.55 1.9E-05 50.6 6.1 45 157-201 352-398 (546)
423 1z47_A CYSA, putative ABC-tran 88.2 0.25 8.6E-06 50.1 3.2 26 174-199 40-65 (355)
424 3t1o_A Gliding protein MGLA; G 88.2 0.26 9E-06 44.7 3.1 24 176-199 15-38 (198)
425 2it1_A 362AA long hypothetical 88.2 0.28 9.5E-06 49.9 3.5 26 174-199 28-53 (362)
426 2ewv_A Twitching motility prot 88.2 0.38 1.3E-05 49.3 4.6 28 173-200 134-161 (372)
427 3bwd_D RAC-like GTP-binding pr 88.2 0.27 9.2E-06 44.0 3.1 24 175-198 8-31 (182)
428 3rlf_A Maltose/maltodextrin im 88.1 0.28 9.5E-06 50.2 3.5 27 174-200 28-54 (381)
429 1ihu_A Arsenical pump-driving 88.1 0.57 2E-05 51.1 6.3 41 173-215 6-46 (589)
430 2atv_A RERG, RAS-like estrogen 88.1 0.33 1.1E-05 44.3 3.7 27 173-199 26-52 (196)
431 2a9k_A RAS-related protein RAL 88.1 0.27 9.3E-06 44.1 3.1 25 175-199 18-42 (187)
432 2qm8_A GTPase/ATPase; G protei 88.1 0.3 1E-05 49.3 3.7 29 172-200 52-80 (337)
433 1fx0_A ATP synthase alpha chai 88.0 0.37 1.3E-05 50.8 4.4 87 174-264 162-265 (507)
434 2efe_B Small GTP-binding prote 88.0 0.27 9.4E-06 43.9 3.1 24 176-199 13-36 (181)
435 2ew1_A RAS-related protein RAB 88.0 0.28 9.6E-06 45.3 3.2 25 175-199 26-50 (201)
436 1gwn_A RHO-related GTP-binding 88.0 0.28 9.6E-06 45.4 3.2 26 174-199 27-52 (205)
437 2g6b_A RAS-related protein RAB 88.0 0.28 9.6E-06 43.8 3.1 25 175-199 10-34 (180)
438 1pui_A ENGB, probable GTP-bind 87.9 0.19 6.6E-06 46.4 2.0 26 173-198 24-49 (210)
439 3oes_A GTPase rhebl1; small GT 87.9 0.29 9.9E-06 44.9 3.2 26 174-199 23-48 (201)
440 2bov_A RAla, RAS-related prote 87.9 0.28 9.6E-06 45.0 3.1 26 174-199 13-38 (206)
441 1p9r_A General secretion pathw 87.8 0.71 2.4E-05 47.9 6.4 35 165-200 158-192 (418)
442 1v43_A Sugar-binding transport 87.8 0.3 1E-05 49.9 3.5 26 174-199 36-61 (372)
443 4dkx_A RAS-related protein RAB 87.8 0.26 8.7E-06 46.3 2.8 22 177-198 15-36 (216)
444 3tw8_B RAS-related protein RAB 87.8 0.26 8.8E-06 44.0 2.8 24 175-198 9-32 (181)
445 1vg8_A RAS-related protein RAB 87.8 0.29 9.8E-06 45.0 3.1 26 174-199 7-32 (207)
446 2fg5_A RAB-22B, RAS-related pr 87.7 0.3 1E-05 44.4 3.2 25 175-199 23-47 (192)
447 1oxx_K GLCV, glucose, ABC tran 87.7 0.24 8.1E-06 50.3 2.7 26 174-199 30-55 (353)
448 1zd9_A ADP-ribosylation factor 87.7 0.3 1E-05 44.3 3.1 25 175-199 22-46 (188)
449 3clv_A RAB5 protein, putative; 87.6 0.29 1E-05 44.5 3.1 25 175-199 7-31 (208)
450 1x6v_B Bifunctional 3'-phospho 87.6 0.34 1.2E-05 52.9 4.0 27 174-200 51-77 (630)
451 2fh5_B SR-beta, signal recogni 87.6 0.32 1.1E-05 45.0 3.4 26 174-199 6-31 (214)
452 1g29_1 MALK, maltose transport 87.5 0.29 9.8E-06 50.1 3.2 25 175-199 29-53 (372)
453 3reg_A RHO-like small GTPase; 87.5 0.31 1E-05 44.4 3.1 25 175-199 23-47 (194)
454 3ch4_B Pmkase, phosphomevalona 87.5 0.48 1.7E-05 43.7 4.4 27 173-199 9-35 (202)
455 2g3y_A GTP-binding protein GEM 87.4 0.29 9.9E-06 45.7 3.0 23 175-197 37-59 (211)
456 2gf9_A RAS-related protein RAB 87.4 0.31 1.1E-05 44.1 3.1 25 175-199 22-46 (189)
457 1ksh_A ARF-like protein 2; sma 87.4 0.35 1.2E-05 43.6 3.4 27 173-199 16-42 (186)
458 3k9g_A PF-32 protein; ssgcid, 87.3 1.4 4.8E-05 42.4 8.0 46 173-221 25-71 (267)
459 2a5j_A RAS-related protein RAB 87.3 0.32 1.1E-05 44.2 3.1 24 176-199 22-45 (191)
460 1z06_A RAS-related protein RAB 87.2 0.33 1.1E-05 44.0 3.1 26 174-199 19-44 (189)
461 1u0l_A Probable GTPase ENGC; p 87.2 0.46 1.6E-05 47.1 4.4 35 163-200 160-194 (301)
462 3ea0_A ATPase, para family; al 87.2 0.5 1.7E-05 44.8 4.5 42 174-216 3-45 (245)
463 1ypw_A Transitional endoplasmi 87.1 0.21 7.2E-06 56.7 2.1 153 152-324 475-662 (806)
464 1wcv_1 SOJ, segregation protei 87.1 0.49 1.7E-05 45.5 4.5 42 173-216 4-46 (257)
465 3tkl_A RAS-related protein RAB 87.1 0.33 1.1E-05 44.0 3.1 25 175-199 16-40 (196)
466 2bcg_Y Protein YP2, GTP-bindin 87.1 0.34 1.2E-05 44.5 3.2 25 175-199 8-32 (206)
467 2qnr_A Septin-2, protein NEDD5 87.1 0.29 9.8E-06 48.6 2.8 21 177-197 20-40 (301)
468 3gd7_A Fusion complex of cysti 86.9 0.37 1.3E-05 49.5 3.6 25 174-198 46-70 (390)
469 2gf0_A GTP-binding protein DI- 86.9 0.48 1.6E-05 43.0 4.1 26 174-199 7-32 (199)
470 2p5s_A RAS and EF-hand domain 86.9 0.34 1.2E-05 44.4 3.1 26 174-199 27-52 (199)
471 1x3s_A RAS-related protein RAB 86.9 0.35 1.2E-05 43.8 3.1 24 176-199 16-39 (195)
472 3igf_A ALL4481 protein; two-do 86.9 0.5 1.7E-05 48.3 4.5 42 176-220 3-44 (374)
473 3llu_A RAS-related GTP-binding 86.8 0.29 9.9E-06 44.8 2.5 24 175-198 20-43 (196)
474 2qu8_A Putative nucleolar GTP- 86.8 0.41 1.4E-05 45.0 3.7 25 174-198 28-52 (228)
475 1zbd_A Rabphilin-3A; G protein 86.7 0.34 1.2E-05 44.4 3.0 24 176-199 9-32 (203)
476 2fv8_A H6, RHO-related GTP-bin 86.7 0.37 1.3E-05 44.5 3.2 25 175-199 25-49 (207)
477 2atx_A Small GTP binding prote 86.7 0.37 1.3E-05 43.7 3.2 24 176-199 19-42 (194)
478 2ph1_A Nucleotide-binding prot 86.7 0.87 3E-05 43.9 6.0 39 175-215 18-57 (262)
479 3gqb_A V-type ATP synthase alp 86.7 0.74 2.5E-05 49.0 5.7 57 165-225 210-268 (578)
480 4bas_A ADP-ribosylation factor 86.7 0.38 1.3E-05 43.7 3.3 25 174-198 16-40 (199)
481 2j0v_A RAC-like GTP-binding pr 86.6 0.37 1.3E-05 44.5 3.2 25 175-199 9-33 (212)
482 3hdt_A Putative kinase; struct 86.6 0.5 1.7E-05 44.5 4.1 46 174-233 13-58 (223)
483 1ega_A Protein (GTP-binding pr 86.6 0.33 1.1E-05 48.1 3.0 25 174-198 7-31 (301)
484 3lxx_A GTPase IMAP family memb 86.5 0.4 1.4E-05 45.5 3.5 26 174-199 28-53 (239)
485 2h17_A ADP-ribosylation factor 86.5 0.29 9.9E-06 44.0 2.3 24 175-198 21-44 (181)
486 2hup_A RAS-related protein RAB 86.5 0.39 1.3E-05 44.2 3.2 26 174-199 28-53 (201)
487 2o52_A RAS-related protein RAB 86.5 0.37 1.3E-05 44.2 3.1 25 174-198 24-48 (200)
488 2q3h_A RAS homolog gene family 86.4 0.36 1.2E-05 44.1 3.0 24 175-198 20-43 (201)
489 2obl_A ESCN; ATPase, hydrolase 86.4 0.44 1.5E-05 48.3 3.8 28 173-200 69-96 (347)
490 3iev_A GTP-binding protein ERA 86.4 0.38 1.3E-05 47.8 3.3 25 174-198 9-33 (308)
491 2gco_A H9, RHO-related GTP-bin 86.4 0.4 1.4E-05 44.0 3.2 25 175-199 25-49 (201)
492 2gza_A Type IV secretion syste 86.3 0.33 1.1E-05 49.5 2.9 26 175-200 175-200 (361)
493 2j1l_A RHO-related GTP-binding 86.2 0.38 1.3E-05 44.7 3.1 24 175-198 34-57 (214)
494 3k53_A Ferrous iron transport 86.2 0.45 1.5E-05 46.2 3.7 24 175-198 3-26 (271)
495 2fu5_C RAS-related protein RAB 86.1 0.23 7.9E-06 44.6 1.4 24 175-198 8-31 (183)
496 3cph_A RAS-related protein SEC 86.1 0.4 1.4E-05 44.2 3.1 25 175-199 20-44 (213)
497 3q3j_B RHO-related GTP-binding 86.0 0.41 1.4E-05 44.6 3.1 24 176-199 28-51 (214)
498 2aka_B Dynamin-1; fusion prote 86.0 0.79 2.7E-05 44.9 5.4 37 163-199 8-50 (299)
499 1c9k_A COBU, adenosylcobinamid 85.7 0.39 1.3E-05 43.5 2.7 34 178-217 2-35 (180)
500 3ez2_A Plasmid partition prote 85.7 1.3 4.6E-05 45.5 7.2 56 162-217 88-155 (398)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.5e-46 Score=410.15 Aligned_cols=312 Identities=14% Similarity=0.119 Sum_probs=238.5
Q ss_pred cccHHHHHHHHHHhcCC---CceEEEEEecCCchHHHHHHHHHH--HhccCCCCCeEEEEEeCCCC--ChHHHHHHHHHh
Q 007268 157 ESRASILNEIMDALKNP---NVNMLLIYGMGGIGKTTLAKKVAR--KAESDKLFDQVVLSEVSESR--DVRKIQGEIADK 229 (610)
Q Consensus 157 vGR~~~~~~L~~~L~~~---~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~ 229 (610)
+||++++++|.++|... ..++|+|+||||+||||||+++|+ +...+.+|++++||++++.. ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999733 679999999999999999999998 56677889999999999885 789999999999
Q ss_pred hCCCCC---C-----CChhHHHHHHHHHHhCCCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEecccccccccCCc
Q 007268 230 LGLKFD---V-----ESESGRARILYDRLKKEERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEVLSGEMES 301 (610)
Q Consensus 230 l~~~~~---~-----~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~ 301 (610)
++.... . .+.......+.+.|...|||||||||||+...+ .+. ..+||+||||||+..++......
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCC
Confidence 986522 1 122334667777777434999999999998754 221 12699999999999987533224
Q ss_pred cceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCCCC
Q 007268 302 RKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALRNKGIREWKDALEQ-LRRPSSSNF 380 (610)
Q Consensus 302 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~~~~~~~w~~~l~~-l~~~~~~~~ 380 (610)
...|+|++|+.++||+||.+.++....++.+.+++++|+++|+|+||||+++|+.|+.++. +|...+.. +....
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~---- 359 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRG---- 359 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHC----
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhccc----
Confidence 4679999999999999999998765545778889999999999999999999999987643 33333332 11101
Q ss_pred CCchhHHHHHHHhhHccCCchhHHHHHH-----------HhccCC-CCChHHHHHhhcCC--CCcchhhccccccccccc
Q 007268 381 KDVQPAAFKAIELSYNKLGRDDLKNIFL-----------LIGYTA-IASIDDLLINQSPD--ILKPELLYHGKENKKSIG 446 (610)
Q Consensus 381 ~~~~~~i~~~l~~Sy~~L~~~~~k~cfl-----------~ls~FP-~i~~~~Li~~W~ae--g~~~~~~~~~~~~~~~~~ 446 (610)
...+..+|.+||+.||++ +|.||+ |||+|| +.+.. +++|+|+ ||+.....
T Consensus 360 ---~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~---------- 423 (549)
T 2a5y_B 360 ---LVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEE---------- 423 (549)
T ss_dssp ---SSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-----------------
T ss_pred ---HHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCC----------
Confidence 234677889999999998 999999 999999 44443 8999999 99863210
Q ss_pred hhhHHHHHHhhcCCcceecCCCCCCCCCCchhhhhhhhhhhhhhccccccccccccceeehhhhhhhhcccccccc
Q 007268 447 NSEAVQLFDDCTGKLDCVTPGNSAREDNPGAADYFENKINLRKICRIEQSEEVAGCDWVSLVSDAVLNSKLSIVEN 522 (610)
Q Consensus 447 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~f~eLi~r~~i~~v~~~~~~~~~~vH~lv~~~i~s~~~~~~~~ 522 (610)
....+++++ ||++|+++|++++...+ ....|+|||+||+++++ .+..++
T Consensus 424 -----------------------~~~~~~~~~-~l~~L~~rsLl~~~~~~-~~~~~~mHdlv~~~a~~--~~~~~~ 472 (549)
T 2a5y_B 424 -----------------------EQLDDEVAD-RLKRLSKRGALLSGKRM-PVLTFKIDHIIHMFLKH--VVDAQT 472 (549)
T ss_dssp -----------------------CCCTHHHHH-HHHHTTTBSSCSEEECS-SSCEEECCHHHHHHHHT--TSCTHH
T ss_pred -----------------------CCCHHHHHH-HHHHHHHcCCeeEecCC-CceEEEeChHHHHHHHH--HHHHHH
Confidence 011145677 99999999999987643 56789999999999976 555443
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.7e-39 Score=389.82 Aligned_cols=309 Identities=19% Similarity=0.253 Sum_probs=244.9
Q ss_pred CCCCCcCccccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhcc-CC-CCCeEEEEEeCCCCC--hHHH
Q 007268 149 PNKDYEAFESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAES-DK-LFDQVVLSEVSESRD--VRKI 222 (610)
Q Consensus 149 ~~~~~~~~vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~-~f~~~~wv~vs~~~~--~~~~ 222 (610)
+|.....|+||++++++|.++|. +++.++|+|+||||+||||||+++|++... .. .|+.++|+++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 34556789999999999999995 467899999999999999999999987543 23 457899999998543 4445
Q ss_pred HHHHHHhhCCCCC-----CCChhHHHHHHHHHHhC-CCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEeccccccc
Q 007268 223 QGEIADKLGLKFD-----VESESGRARILYDRLKK-EERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEVLS 296 (610)
Q Consensus 223 ~~~i~~~l~~~~~-----~~~~~~~~~~l~~~L~~-~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~ 296 (610)
+..++..++.... ..........+...+.. ++||||||||||+...|..+ .+||+||||||++.++.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 6677777765432 12334445555555542 34999999999998877654 46899999999999875
Q ss_pred ccCCccceecCCC-CCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCHHHHHHHHHHhcCC
Q 007268 297 GEMESRKNFPVGF-LKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALRNKGIREWKDALEQLRRP 375 (610)
Q Consensus 297 ~~~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~~~~~~~w~~~l~~l~~~ 375 (610)
........+.+.+ |+.++|++||...++.. .+...+.+++|+++|+|+||||+++|++|+.++ .+|...++.+...
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNK 348 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSC
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhh
Confidence 4456677899996 99999999999988533 233446789999999999999999999999775 5798889888655
Q ss_pred CCCCC----CCchhHHHHHHHhhHccCCchhHHHHHHHhccCC-C--CChHHHHHhhcCCCCcchhhccccccccccchh
Q 007268 376 SSSNF----KDVQPAAFKAIELSYNKLGRDDLKNIFLLIGYTA-I--ASIDDLLINQSPDILKPELLYHGKENKKSIGNS 448 (610)
Q Consensus 376 ~~~~~----~~~~~~i~~~l~~Sy~~L~~~~~k~cfl~ls~FP-~--i~~~~Li~~W~aeg~~~~~~~~~~~~~~~~~~~ 448 (610)
..... ......+..+|.+||+.||++ +|.||+|||+|| + |+.+.++.+|.+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------------- 408 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------------- 408 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH-------------------
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH-------------------
Confidence 43322 122467999999999999999 999999999999 4 99999999997653
Q ss_pred hHHHHHHhhcCCcceecCCCCCCCCCCchhhhhhhhhhhhhhccccccccccccceeehhhhhhhh
Q 007268 449 EAVQLFDDCTGKLDCVTPGNSAREDNPGAADYFENKINLRKICRIEQSEEVAGCDWVSLVSDAVLN 514 (610)
Q Consensus 449 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~f~eLi~r~~i~~v~~~~~~~~~~vH~lv~~~i~s 514 (610)
+.++.+|++|+++++++.. .++...+|+||++|+++++.
T Consensus 409 --------------------------~~~~~~l~~L~~~sl~~~~-~~~~~~~~~~h~l~~~~~~~ 447 (1249)
T 3sfz_A 409 --------------------------EEVEDILQEFVNKSLLFCN-RNGKSFCYYLHDLQVDFLTE 447 (1249)
T ss_dssp --------------------------HHHHHHHHHHHHTTSCEEE-ESSSSEEEECCHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHhccceEEe-cCCCceEEEecHHHHHHHHh
Confidence 2678999999999999854 35666789999999999877
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.4e-38 Score=350.07 Aligned_cols=279 Identities=17% Similarity=0.123 Sum_probs=219.8
Q ss_pred CccccHHHHHHHHHHhcC-CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCe-EEEEEeCCCCChHHHHHHHHHhhCC
Q 007268 155 AFESRASILNEIMDALKN-PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQ-VVLSEVSESRDVRKIQGEIADKLGL 232 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (610)
..+||++++++|.++|.. ++.++|+|+||||+||||||+++|++.+.+.+|+. ++|+++++.++...++..|+..++.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 349999999999999974 55799999999999999999999987666666985 9999999999988888887775421
Q ss_pred ---CCC--CC---Ch----hHHHHHHHHHHh--CCCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEeccccccccc
Q 007268 233 ---KFD--VE---SE----SGRARILYDRLK--KEERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEVLSGE 298 (610)
Q Consensus 233 ---~~~--~~---~~----~~~~~~l~~~L~--~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 298 (610)
... .. .. ......+.+.|. .++|+||||||||+...|+.+. +||+||||||+..++..
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~- 280 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF- 280 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH-
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh-
Confidence 111 00 11 122344555441 3689999999999988887752 68999999999988631
Q ss_pred CCccceecCC------CCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHhcC--CHHHHHHHHH
Q 007268 299 MESRKNFPVG------FLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALRNK--GIREWKDALE 370 (610)
Q Consensus 299 ~~~~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~~~--~~~~w~~~l~ 370 (610)
......+.++ +|+.+||++||.+.++.. .. ++..+ .|+|+||||+++|+.|+.+ +..+|...
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~e---eL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~-- 350 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--PQ---DLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV-- 350 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--TT---THHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC--
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC--HH---HHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC--
Confidence 2222356666 999999999999986532 11 22333 3999999999999999977 78888652
Q ss_pred HhcCCCCCCCCCchhHHHHHHHhhHccCCchhH-HHHHHHhccCC-C--CChHHHHHhhcCCCCcchhhccccccccccc
Q 007268 371 QLRRPSSSNFKDVQPAAFKAIELSYNKLGRDDL-KNIFLLIGYTA-I--ASIDDLLINQSPDILKPELLYHGKENKKSIG 446 (610)
Q Consensus 371 ~l~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~-k~cfl~ls~FP-~--i~~~~Li~~W~aeg~~~~~~~~~~~~~~~~~ 446 (610)
....+..+|.+||+.||++ . |.||+|||+|| + |+.+.++.+|+++|.
T Consensus 351 ------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe---------------- 401 (1221)
T 1vt4_I 351 ------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK---------------- 401 (1221)
T ss_dssp ------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS----------------
T ss_pred ------------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH----------------
Confidence 1468999999999999999 8 99999999999 4 899999999998872
Q ss_pred hhhHHHHHHhhcCCcceecCCCCCCCCCCchhhhhhhhhhhhhhccccccccccccceeehhhhh
Q 007268 447 NSEAVQLFDDCTGKLDCVTPGNSAREDNPGAADYFENKINLRKICRIEQSEEVAGCDWVSLVSDA 511 (610)
Q Consensus 447 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~f~eLi~r~~i~~v~~~~~~~~~~vH~lv~~~ 511 (610)
+.++.+|++|+++|+|+. ++....|+||++++++
T Consensus 402 ----------------------------edAe~~L~eLvdRSLLq~---d~~~~rYrMHDLllEL 435 (1221)
T 1vt4_I 402 ----------------------------SDVMVVVNKLHKYSLVEK---QPKESTISIPSIYLEL 435 (1221)
T ss_dssp ----------------------------HHHHHHHHHHHTSSSSSB---CSSSSEEBCCCHHHHH
T ss_pred ----------------------------HHHHHHHHHHHhhCCEEE---eCCCCEEEehHHHHHH
Confidence 146899999999999987 2456789999999984
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.4e-36 Score=333.81 Aligned_cols=306 Identities=20% Similarity=0.252 Sum_probs=231.1
Q ss_pred CCCcCccccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhcc-CCCC-CeEEEEEeCCCCChHHHHHH-
Q 007268 151 KDYEAFESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAES-DKLF-DQVVLSEVSESRDVRKIQGE- 225 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~f-~~~~wv~vs~~~~~~~~~~~- 225 (610)
.....|+||+.++++|.++|. .++.++|+|+|+||+||||||.+++++... ..+| ++++|++++.. +...++..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 345679999999999999997 356789999999999999999999987643 4458 58999999876 33333333
Q ss_pred --HHHhhCCC-----CCCCChhHHHHHHHHHHhC-CCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEecccccccc
Q 007268 226 --IADKLGLK-----FDVESESGRARILYDRLKK-EERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEVLSG 297 (610)
Q Consensus 226 --i~~~l~~~-----~~~~~~~~~~~~l~~~L~~-~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 297 (610)
++..++.. ............+...+.. .+++||||||+|+...+..+ .+|++||||||+..++..
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHh
Confidence 34455531 1123334455666666653 37899999999987665543 458899999999987643
Q ss_pred cCCccce-ecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCHHHHHHHHHHhcCCC
Q 007268 298 EMESRKN-FPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALRNKGIREWKDALEQLRRPS 376 (610)
Q Consensus 298 ~~~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~~~~~~~w~~~l~~l~~~~ 376 (610)
..+.... ..+++|+.+++++||...++.. .....+.+.+|+++|+|+||||.++|+.++... .+|..+++.+....
T Consensus 273 ~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~ 349 (591)
T 1z6t_A 273 VMGPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQ 349 (591)
T ss_dssp CCSCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCC
T ss_pred cCCCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhH
Confidence 2222222 2236999999999999998742 222235788999999999999999999999763 36888888886543
Q ss_pred CCCC----CCchhHHHHHHHhhHccCCchhHHHHHHHhccCC-C--CChHHHHHhhcCCCCcchhhccccccccccchhh
Q 007268 377 SSNF----KDVQPAAFKAIELSYNKLGRDDLKNIFLLIGYTA-I--ASIDDLLINQSPDILKPELLYHGKENKKSIGNSE 449 (610)
Q Consensus 377 ~~~~----~~~~~~i~~~l~~Sy~~L~~~~~k~cfl~ls~FP-~--i~~~~Li~~W~aeg~~~~~~~~~~~~~~~~~~~~ 449 (610)
.... ......+..+|.+||+.||++ .|.||++||+|| + |+.+.|...|.+++
T Consensus 350 ~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~-------------------- 408 (591)
T 1z6t_A 350 FKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET-------------------- 408 (591)
T ss_dssp CCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------------------
T ss_pred HHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH--------------------
Confidence 2221 122468999999999999999 999999999998 4 99999999996542
Q ss_pred HHHHHHhhcCCcceecCCCCCCCCCCchhhhhhhhhhhhhhccccccccccccceeehhhhhhhh
Q 007268 450 AVQLFDDCTGKLDCVTPGNSAREDNPGAADYFENKINLRKICRIEQSEEVAGCDWVSLVSDAVLN 514 (610)
Q Consensus 450 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~f~eLi~r~~i~~v~~~~~~~~~~vH~lv~~~i~s 514 (610)
+.++.++++|+++++|+.. .++....|+||++|+++++.
T Consensus 409 -------------------------~~~~~~l~~L~~~~Ll~~~-~~~~~~~~~~H~lv~~~~~~ 447 (591)
T 1z6t_A 409 -------------------------EEVEDILQEFVNKSLLFCD-RNGKSFRYYLHDLQVDFLTE 447 (591)
T ss_dssp -------------------------HHHHHHHHHHHHTTSSEEE-EETTEEEEECCHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHhCcCeEEe-cCCCccEEEEcHHHHHHHHh
Confidence 1467899999999999843 34566789999999999876
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.68 E-value=1.6e-15 Score=156.95 Aligned_cols=289 Identities=15% Similarity=0.108 Sum_probs=174.5
Q ss_pred CCCCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC------ChHHH
Q 007268 149 PNKDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR------DVRKI 222 (610)
Q Consensus 149 ~~~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~------~~~~~ 222 (610)
|+.....|+||+++++.|.+++..+ +++.|+|++|+|||+|++++++... ++|+++.... +...+
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHH
Confidence 3445578999999999999988653 7999999999999999999998741 6788775432 56666
Q ss_pred HHHHHHhhCC-----------------CCC--CCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc---------chhhcC
Q 007268 223 QGEIADKLGL-----------------KFD--VESESGRARILYDRLKKEERILVILDNIWENLD---------LLDVGI 274 (610)
Q Consensus 223 ~~~i~~~l~~-----------------~~~--~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~---------~~~l~~ 274 (610)
+..+...+.. ..+ ..........+.+.....++++|||||++.... +..+.
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~- 156 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFA- 156 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH-
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHH-
Confidence 6666665532 000 112222333343333322389999999976432 12121
Q ss_pred CCCCCCCCeEEEEEeccccccc----------ccC-CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHc
Q 007268 275 PHGDDHKGCKVLFTARSEEVLS----------GEM-ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEEC 343 (610)
Q Consensus 275 ~l~~~~~gs~IivTTR~~~va~----------~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c 343 (610)
.+....++.++|+|++...... ... .....+.+.+|+.+++.+++...+....... ..+.+..|++.|
T Consensus 157 ~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~~~i~~~t 235 (350)
T 2qen_A 157 YAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEEAVELL 235 (350)
T ss_dssp HHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHh
Confidence 1111124778999987653211 011 1124799999999999999988653211111 135678999999
Q ss_pred CCchHHHHHHHHHHhc-CCHHHHH-HHHHHhcCCCCCCCCCchhHHHHHHHhhHccC---CchhHHHHHHHhccCCCCCh
Q 007268 344 AGLPVSIVTVARALRN-KGIREWK-DALEQLRRPSSSNFKDVQPAAFKAIELSYNKL---GRDDLKNIFLLIGYTAIASI 418 (610)
Q Consensus 344 ~GlPLai~~i~~~L~~-~~~~~w~-~~l~~l~~~~~~~~~~~~~~i~~~l~~Sy~~L---~~~~~k~cfl~ls~FP~i~~ 418 (610)
+|+|+++..++..+.. .+...+. ...+. +...+.-.+..+ ++. .+..+..+|. ..++.
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~l~~~~~~-~~~~l~~la~-g~~~~ 298 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMKRTLEV---------------AKGLIMGELEELRRRSPR-YVDILRAIAL-GYNRW 298 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHCHH-HHHHHHHHHT-TCCSH
T ss_pred CCCHHHHHHHHHHHhccccHhHHHHHHHHH---------------HHHHHHHHHHHHHhCChh-HHHHHHHHHh-CCCCH
Confidence 9999999999876542 3333221 11111 111111112222 666 8888888887 22554
Q ss_pred HHHHHhhcC-C-CCcchhhccccccccccchhhHHHHHHhhcCCcceecCCCCCCCCCCchhhhhhhhhhhhhhcccccc
Q 007268 419 DDLLINQSP-D-ILKPELLYHGKENKKSIGNSEAVQLFDDCTGKLDCVTPGNSAREDNPGAADYFENKINLRKICRIEQS 496 (610)
Q Consensus 419 ~~Li~~W~a-e-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~f~eLi~r~~i~~v~~~ 496 (610)
..+...... . |.. ......|++.|++.+++....
T Consensus 299 ~~l~~~~~~~~~~~~------------------------------------------~~~~~~~l~~L~~~gli~~~~-- 334 (350)
T 2qen_A 299 SLIRDYLAVKGTKIP------------------------------------------EPRLYALLENLKKMNWIVEED-- 334 (350)
T ss_dssp HHHHHHHHHTTCCCC------------------------------------------HHHHHHHHHHHHHTTSEEEET--
T ss_pred HHHHHHHHHHhCCCC------------------------------------------HHHHHHHHHHHHhCCCEEecC--
Confidence 555443311 1 110 114568899999999886541
Q ss_pred ccccccce-eehhhhhh
Q 007268 497 EEVAGCDW-VSLVSDAV 512 (610)
Q Consensus 497 ~~~~~~~v-H~lv~~~i 512 (610)
..|++ |.++++++
T Consensus 335 ---~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 335 ---NTYKIADPVVATVL 348 (350)
T ss_dssp ---TEEEESSHHHHHHH
T ss_pred ---CEEEEecHHHHHHH
Confidence 23554 66777665
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.64 E-value=2.8e-15 Score=155.45 Aligned_cols=238 Identities=14% Similarity=0.178 Sum_probs=143.7
Q ss_pred CCCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-----CChHHHHH
Q 007268 150 NKDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-----RDVRKIQG 224 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~~ 224 (610)
......|+||+++++.|.+ +.. +++.|+|++|+|||+|++++++.... ..+|+++... .+...++.
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHH
Confidence 3445689999999999999 765 69999999999999999999988642 2578887643 34444544
Q ss_pred HHHHhhC------------------CCCCCCC--------hhHHHHHHHHHHhC-C-CeEEEEEeCCCCcc-----cchh
Q 007268 225 EIADKLG------------------LKFDVES--------ESGRARILYDRLKK-E-ERILVILDNIWENL-----DLLD 271 (610)
Q Consensus 225 ~i~~~l~------------------~~~~~~~--------~~~~~~~l~~~L~~-~-kr~LLVLDdv~~~~-----~~~~ 271 (610)
.+...+. .+.+... .......+.+.+.. . ++++|||||++... .+..
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 4443321 0000000 01123344444442 1 48999999996532 2222
Q ss_pred hcCCCCCCCCCeEEEEEeccccccc----------ccCCc-cceecCCCCCHHHHHHHHHHHhCC-CCCCchHHHHHHHH
Q 007268 272 VGIPHGDDHKGCKVLFTARSEEVLS----------GEMES-RKNFPVGFLKEEEAWSLFKKMAGD-YVEGSELEEVARNV 339 (610)
Q Consensus 272 l~~~l~~~~~gs~IivTTR~~~va~----------~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~I 339 (610)
+...+.....+.++|+|++...... ...+. ...+.+.+|+.+++.+++...+.. ....+.. ..|
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i 235 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EVV 235 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHH
Confidence 2121111224678999998754211 01111 257999999999999999886531 1111121 689
Q ss_pred HHHcCCchHHHHHHHHHHhc-CCHHHHHH-HHHHhcCCCCCCCCCchhHHHHHHH-hhH--ccCCchhHHHHHHHhcc
Q 007268 340 VEECAGLPVSIVTVARALRN-KGIREWKD-ALEQLRRPSSSNFKDVQPAAFKAIE-LSY--NKLGRDDLKNIFLLIGY 412 (610)
Q Consensus 340 ~~~c~GlPLai~~i~~~L~~-~~~~~w~~-~l~~l~~~~~~~~~~~~~~i~~~l~-~Sy--~~L~~~~~k~cfl~ls~ 412 (610)
++.|+|+|+++..++..+.. .+...|.. +.+.. ...+..-+. +.+ ..||+. .+..+..+|.
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~ 301 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-----------KKLILKEFENFLHGREIARKR-YLNIMRTLSK 301 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-----------HHHHHHHHHHHhhccccccHH-HHHHHHHHHc
Confidence 99999999999999887653 34444422 11110 111122222 111 167777 8888888887
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=1.3e-14 Score=153.71 Aligned_cols=304 Identities=15% Similarity=0.095 Sum_probs=183.5
Q ss_pred cCccccHHHHHHHHHHh-c----C--CCceEEEE--EecCCchHHHHHHHHHHHhccC---CCCC-eEEEEEeCCCCChH
Q 007268 154 EAFESRASILNEIMDAL-K----N--PNVNMLLI--YGMGGIGKTTLAKKVARKAESD---KLFD-QVVLSEVSESRDVR 220 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L-~----~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~---~~f~-~~~wv~vs~~~~~~ 220 (610)
..|+||+++++.|.+++ . . ...+.+.| +|++|+|||+||+.+++..... ..+. .++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999888 4 2 34567777 9999999999999999876542 1123 46788887778889
Q ss_pred HHHHHHHHhhCCCCCC--CChhHHHHHHHHHHh-CCCeEEEEEeCCCCcc--------cchhhcCCC---CCCC--CCeE
Q 007268 221 KIQGEIADKLGLKFDV--ESESGRARILYDRLK-KEERILVILDNIWENL--------DLLDVGIPH---GDDH--KGCK 284 (610)
Q Consensus 221 ~~~~~i~~~l~~~~~~--~~~~~~~~~l~~~L~-~~kr~LLVLDdv~~~~--------~~~~l~~~l---~~~~--~gs~ 284 (610)
.++..++..++..... .+.......+.+.+. .+++++|||||++... .+..+...+ +..+ ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999999765432 223344555666654 3579999999997532 222221111 1112 3456
Q ss_pred EEEEecccccccc-------c-CCccceecCCCCCHHHHHHHHHHHhC---CCCCCchHHHHHHHHHHHcC------Cch
Q 007268 285 VLFTARSEEVLSG-------E-MESRKNFPVGFLKEEEAWSLFKKMAG---DYVEGSELEEVARNVVEECA------GLP 347 (610)
Q Consensus 285 IivTTR~~~va~~-------~-~~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~I~~~c~------GlP 347 (610)
+|+||+...+... . ......+.+.+|+.++++++|...+. ... .-..+....|++.|+ |+|
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCcH
Confidence 8888876542100 0 01112399999999999999987652 211 112366788999999 999
Q ss_pred HHHHHHHHHHh------cC---CHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhHccCCchhHHHHHHHhccCC----
Q 007268 348 VSIVTVARALR------NK---GIREWKDALEQLRRPSSSNFKDVQPAAFKAIELSYNKLGRDDLKNIFLLIGYTA---- 414 (610)
Q Consensus 348 Lai~~i~~~L~------~~---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~k~cfl~ls~FP---- 414 (610)
..+..+..... +. +...+...+..... ...+.-++..||++ .+.++..++.+.
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGM 325 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCC
Confidence 76655543321 11 33444444433110 12344467889988 899988888642
Q ss_pred C-CChHHHHHhhcCCCCcchhhccccccccccchhhHHHHHHhhcCCcce-ecCCCCCCCCCCchhhhhhhhhhhhhhcc
Q 007268 415 I-ASIDDLLINQSPDILKPELLYHGKENKKSIGNSEAVQLFDDCTGKLDC-VTPGNSAREDNPGAADYFENKINLRKICR 492 (610)
Q Consensus 415 ~-i~~~~Li~~W~aeg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~e~~~~~~f~eLi~r~~i~~ 492 (610)
. ++...+...+.. + | ...+..... ......++++|+..+++..
T Consensus 326 ~~~~~~~~~~~~~~-------------------------~---------~~~~~~~~~~~-~~~~~~~l~~L~~~gli~~ 370 (412)
T 1w5s_A 326 EWINAGLLRQRYED-------------------------A---------SLTMYNVKPRG-YTQYHIYLKHLTSLGLVDA 370 (412)
T ss_dssp SSBCHHHHHHHHHH-------------------------H---------HHHHSCCCCCC-HHHHHHHHHHHHHTTSEEE
T ss_pred CCccHHHHHHHHHH-------------------------H---------HHhhcCCCCCC-HHHHHHHHHHHHhCCCEEe
Confidence 2 555555443310 0 0 000000000 1134678999999999876
Q ss_pred cccc-ccccccceeehh
Q 007268 493 IEQS-EEVAGCDWVSLV 508 (610)
Q Consensus 493 v~~~-~~~~~~~vH~lv 508 (610)
...+ |+...|++|++.
T Consensus 371 ~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 371 KPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp ECC-------CCEEEEC
T ss_pred ecccCCCCCceeEEEeC
Confidence 5432 555668888887
No 8
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.51 E-value=4.6e-14 Score=120.45 Aligned_cols=78 Identities=9% Similarity=0.173 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHhHhhHHHHhhc
Q 007268 18 PPAYREISYLRESKYTTNLQNLKAEVDNLKSERDSLLRQVDEAERNG-EEIEENVRSWLEAANKVIEEADKFTEDEAAAN 96 (610)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~i~~~l~~a~~~~-~~~~~~v~~Wl~~lr~layd~ed~ld~~~~~~ 96 (610)
+++++++..++.+++. .+.|+++++++|+++|++|++||.+++++. ...+++++.|+++||++|||+|||||+|.+..
T Consensus 4 ~~ll~KL~~ll~~E~~-l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 4 SNLIPKLGELLTEEFK-LHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp CSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555444433 455999999999999999999999999874 34689999999999999999999999997643
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=3.8e-12 Score=133.44 Aligned_cols=236 Identities=15% Similarity=0.098 Sum_probs=155.4
Q ss_pred cCccccHHHHHHHHHHhc----CCCceEEEEEecCCchHHHHHHHHHHHhccC-----CC-CCeEEEEEeCCCC-ChHHH
Q 007268 154 EAFESRASILNEIMDALK----NPNVNMLLIYGMGGIGKTTLAKKVARKAESD-----KL-FDQVVLSEVSESR-DVRKI 222 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----~~-f~~~~wv~vs~~~-~~~~~ 222 (610)
..|+||+++++++.+++. ....+.+.|+|++|+|||+||+.+++..... .. ...++|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 679999999999887765 4456799999999999999999999876332 11 3467888887777 88888
Q ss_pred HHHHHHhh-CCCCC--CCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc-------chhhcCCCCCCCCCeEEEEEeccc
Q 007268 223 QGEIADKL-GLKFD--VESESGRARILYDRLKKEERILVILDNIWENLD-------LLDVGIPHGDDHKGCKVLFTARSE 292 (610)
Q Consensus 223 ~~~i~~~l-~~~~~--~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~-------~~~l~~~l~~~~~gs~IivTTR~~ 292 (610)
+..++..+ +.... ..........+.+.+... +.+||||+++.... +..+.... .+..+|+||+..
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~ 174 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSST
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCC
Confidence 88988887 33222 223345566777777643 44999999975421 22222221 577899999876
Q ss_pred ccc----cccC-CccceecCCCCCHHHHHHHHHHHhC---C-CCCCchHHHHHHHHHHHcC---CchH-HHHHHHHHHh-
Q 007268 293 EVL----SGEM-ESRKNFPVGFLKEEEAWSLFKKMAG---D-YVEGSELEEVARNVVEECA---GLPV-SIVTVARALR- 358 (610)
Q Consensus 293 ~va----~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~---~-~~~~~~~~~~~~~I~~~c~---GlPL-ai~~i~~~L~- 358 (610)
... .... .....+.+++++.++..++|...+. . ...+ .+..+.|++.++ |.|. ++..+-....
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 321 1000 1123899999999999999998763 1 1122 245667888887 9887 4444333321
Q ss_pred ----cC-CHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhHccCCchhHHHHHHHhcc
Q 007268 359 ----NK-GIREWKDALEQLRRPSSSNFKDVQPAAFKAIELSYNKLGRDDLKNIFLLIGY 412 (610)
Q Consensus 359 ----~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~k~cfl~ls~ 412 (610)
.. +.+.+..+++... ...+.-++..|+++ .+..+..++.
T Consensus 252 a~~~~~i~~~~v~~~~~~~~--------------~~~~~~~~~~l~~~-~~~~l~al~~ 295 (384)
T 2qby_B 252 ASGGGIIRKEHVDKAIVDYE--------------QERLIEAVKALPFH-YKLALRSLIE 295 (384)
T ss_dssp TTSSSCCCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHT
T ss_pred hcCCCccCHHHHHHHHHHHh--------------cchHHHHHHcCCHH-HHHHHHHHHH
Confidence 12 6677776666531 23466677889877 6655555544
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=5.1e-12 Score=132.28 Aligned_cols=243 Identities=16% Similarity=0.151 Sum_probs=154.1
Q ss_pred cCccccHHHHHHHHHHhc----CCCceEEEEEecCCchHHHHHHHHHHHhccCCC-CCeEEEEEeCCCCChHHHHHHHHH
Q 007268 154 EAFESRASILNEIMDALK----NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKL-FDQVVLSEVSESRDVRKIQGEIAD 228 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-f~~~~wv~vs~~~~~~~~~~~i~~ 228 (610)
..|+||+++++.|.+++. ....+.+.|+|++|+||||||+.+++....... -..++|+++....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999887 445678999999999999999999988754311 235778888777788888888888
Q ss_pred hhCCCCCC--CChhHHHHHHHHHHhC-CCeEEEEEeCCCCcc------cchhhcCCCCC-CCCCeEEEEEeccccccccc
Q 007268 229 KLGLKFDV--ESESGRARILYDRLKK-EERILVILDNIWENL------DLLDVGIPHGD-DHKGCKVLFTARSEEVLSGE 298 (610)
Q Consensus 229 ~l~~~~~~--~~~~~~~~~l~~~L~~-~kr~LLVLDdv~~~~------~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~ 298 (610)
.++..... .........+.+.+.. +++.+||||+++... .+..+...+.. ...+..+|+||+........
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 88765332 2234445666666654 458999999996532 22222111100 23356678888765432111
Q ss_pred C----C--ccceecCCCCCHHHHHHHHHHHhCC-CCCCchHHHHHHHHHHHcC---CchHHHHHHHHHHh------c--C
Q 007268 299 M----E--SRKNFPVGFLKEEEAWSLFKKMAGD-YVEGSELEEVARNVVEECA---GLPVSIVTVARALR------N--K 360 (610)
Q Consensus 299 ~----~--~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~I~~~c~---GlPLai~~i~~~L~------~--~ 360 (610)
. . ....+.+++++.++..+++...+.. .....-..+....+++.++ |.|..+..+..... + .
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~ 259 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTK 259 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 0 1 1257999999999999999986531 1011112355667777777 99984443332221 1 1
Q ss_pred -CHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhHccCCchhHHHHHHHhc
Q 007268 361 -GIREWKDALEQLRRPSSSNFKDVQPAAFKAIELSYNKLGRDDLKNIFLLIG 411 (610)
Q Consensus 361 -~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~k~cfl~ls 411 (610)
+.+.+..++... ....+.-++..||.+ .+..+..++
T Consensus 260 i~~~~v~~a~~~~--------------~~~~~~~~~~~l~~~-~~~il~ai~ 296 (386)
T 2qby_A 260 VKEEYVYMAKEEI--------------ERDRVRDIILTLPFH-SKLVLMAVV 296 (386)
T ss_dssp CCHHHHHHHHHHH--------------HHHHHHHHHHTSCHH-HHHHHHHHH
T ss_pred cCHHHHHHHHHHH--------------hhchHHHHHHcCCHH-HHHHHHHHH
Confidence 555555555442 123455667788877 666555554
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.36 E-value=2.2e-11 Score=127.53 Aligned_cols=240 Identities=15% Similarity=0.129 Sum_probs=155.2
Q ss_pred cCccccHHHHHHHHHHhc----CCCceEEEEEecCCchHHHHHHHHHHHhccC----CCCCeEEEEEeCCCCChHHHHHH
Q 007268 154 EAFESRASILNEIMDALK----NPNVNMLLIYGMGGIGKTTLAKKVARKAESD----KLFDQVVLSEVSESRDVRKIQGE 225 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~~ 225 (610)
..|+||+++++.+..++. ....+.+.|+|++|+|||+||+.+++..... ..-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 679999999999999884 3456789999999999999999999876432 11235778888888889999999
Q ss_pred HHHhhCCCCCC--CChhHHHHHHHHHHhC-CCeEEEEEeCCCCcccc----hhh---cCCCCCC--CCCeEEEEEecccc
Q 007268 226 IADKLGLKFDV--ESESGRARILYDRLKK-EERILVILDNIWENLDL----LDV---GIPHGDD--HKGCKVLFTARSEE 293 (610)
Q Consensus 226 i~~~l~~~~~~--~~~~~~~~~l~~~L~~-~kr~LLVLDdv~~~~~~----~~l---~~~l~~~--~~gs~IivTTR~~~ 293 (610)
++..++..... .........+.+.+.. +++.+||||+++..... +.+ ....... ..+..+|+||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 99999765432 2234456666767643 56899999999864321 111 1111111 34556788887653
Q ss_pred ccc----ccCC--ccceecCCCCCHHHHHHHHHHHhCC----CCCCchHHHHHHHHHHHcC---CchHH-HHHHHHHHh-
Q 007268 294 VLS----GEME--SRKNFPVGFLKEEEAWSLFKKMAGD----YVEGSELEEVARNVVEECA---GLPVS-IVTVARALR- 358 (610)
Q Consensus 294 va~----~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~----~~~~~~~~~~~~~I~~~c~---GlPLa-i~~i~~~L~- 358 (610)
... .... ....+.+++++.++..+++...+.. ...++ +..+.+++.++ |.|.. +..+.....
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 211 0111 1247999999999999999987631 11222 45667888888 99943 333322221
Q ss_pred ----c--C-CHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhHccCCchhHHHHHHHhc
Q 007268 359 ----N--K-GIREWKDALEQLRRPSSSNFKDVQPAAFKAIELSYNKLGRDDLKNIFLLIG 411 (610)
Q Consensus 359 ----~--~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~k~cfl~ls 411 (610)
+ . +.+.+..++.... ...+.-++..||.+ .+..+..++
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~~l~a~~ 300 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPLH-AKLVLLSIM 300 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHH
Confidence 1 1 5666666665531 22455677889987 666555554
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.36 E-value=1.1e-11 Score=120.49 Aligned_cols=199 Identities=12% Similarity=0.142 Sum_probs=118.8
Q ss_pred CCCcCccccHHHHHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++||+.+++.|..++..+. .+.+.|+|++|+||||||+.+++.......+.. ........ ...+...
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~ 92 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQG 92 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHTT
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhcc
Confidence 345679999999999999987443 458999999999999999999987754321100 00000000 0001000
Q ss_pred hC-----CCCCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEecccccc-cc
Q 007268 230 LG-----LKFDVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARSEEVL-SG 297 (610)
Q Consensus 230 l~-----~~~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~va-~~ 297 (610)
.. ..............+.+.+. .+++.+|||||++.. ..+..+...+.....+..+|+||+..... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 00 00000011111222222221 246799999999753 34444433333334577888888765422 11
Q ss_pred cCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007268 298 EMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARAL 357 (610)
Q Consensus 298 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L 357 (610)
.......+.+.+++.++..+++...+....... ..+....|++.|+|+|..+..+...+
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122346899999999999999998874221111 13567789999999999988776554
No 13
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.34 E-value=3.8e-11 Score=125.87 Aligned_cols=243 Identities=16% Similarity=0.153 Sum_probs=154.2
Q ss_pred cCccccHHHHHHHHHHhcC----CCce--EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHH
Q 007268 154 EAFESRASILNEIMDALKN----PNVN--MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~----~~~~--vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
..++||+.+++.|..++.. .... .+.|+|++|+||||||+.+++...... -..++|++++...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 5799999999999888863 3334 899999999999999999998876431 13577888888888889999999
Q ss_pred HhhCCCCCC--CChhHHHHHHHHHHh-CCCeEEEEEeCCCCc--ccchhhcCCCCCC-C---CCeEEEEEeccccccccc
Q 007268 228 DKLGLKFDV--ESESGRARILYDRLK-KEERILVILDNIWEN--LDLLDVGIPHGDD-H---KGCKVLFTARSEEVLSGE 298 (610)
Q Consensus 228 ~~l~~~~~~--~~~~~~~~~l~~~L~-~~kr~LLVLDdv~~~--~~~~~l~~~l~~~-~---~gs~IivTTR~~~va~~~ 298 (610)
..++..... .........+...+. .+++.+||||+++.. ..+..+...+... . .+..||++|+........
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 988765432 233444555555554 356899999999764 2233332222111 1 366788888776432111
Q ss_pred C----C--ccceecCCCCCHHHHHHHHHHHhCC-CCCCchHHHHHHHHHHHc---------CCchHHHHHHHHHHh----
Q 007268 299 M----E--SRKNFPVGFLKEEEAWSLFKKMAGD-YVEGSELEEVARNVVEEC---------AGLPVSIVTVARALR---- 358 (610)
Q Consensus 299 ~----~--~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~I~~~c---------~GlPLai~~i~~~L~---- 358 (610)
. . ....+.+.+++.++..+++...+.. .....-..+....|++.+ +|.|..+..+.....
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 1 0 1236999999999999999887632 001112236678899999 798865544433221
Q ss_pred --cC---CHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhHccCCchhHHHHHHHhcc
Q 007268 359 --NK---GIREWKDALEQLRRPSSSNFKDVQPAAFKAIELSYNKLGRDDLKNIFLLIGY 412 (610)
Q Consensus 359 --~~---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~k~cfl~ls~ 412 (610)
+. +.+............ .+.-.+..||.+ .+.++..++.
T Consensus 256 ~~~~~~i~~~~v~~~~~~~~~~--------------~~~~~l~~l~~~-~~~~L~~l~~ 299 (389)
T 1fnn_A 256 QNGRKHIAPEDVRKSSKEVLFG--------------ISEEVLIGLPLH-EKLFLLAIVR 299 (389)
T ss_dssp HTTCSSCCHHHHHHHHHHHSCC--------------CCHHHHHHSCHH-HHHHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHHHHhhh--------------hHHHHHHcCCHH-HHHHHHHHHH
Confidence 11 344444444443211 112235668877 7776666654
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.33 E-value=1.4e-11 Score=118.09 Aligned_cols=191 Identities=12% Similarity=0.107 Sum_probs=120.4
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhh
Q 007268 151 KDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKL 230 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (610)
.....++||++.++.+.+++.....+.+.|+|++|+|||++|+.+++.......-...+.+..+.......+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 34567899999999999999876666699999999999999999998764321112344555544444333222222111
Q ss_pred CCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEecccccc-cccCCccceecC
Q 007268 231 GLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARSEEVL-SGEMESRKNFPV 307 (610)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~~~va-~~~~~~~~~~~l 307 (610)
.... ...+++.+|||||++... .+..+...+.....++++|+||+..... .........+.+
T Consensus 94 ~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 94 RTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp TSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 1100 012468999999997642 2333332222234567888888765422 111122348999
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007268 308 GFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARAL 357 (610)
Q Consensus 308 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L 357 (610)
.+++.++..+++.+.+...... -..+....|++.++|.|..+..+...+
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999877421111 113567788999999998665554433
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.21 E-value=2.3e-10 Score=116.92 Aligned_cols=176 Identities=14% Similarity=0.114 Sum_probs=109.8
Q ss_pred CCcCccccHHHHHHHHHHhc-----CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHH
Q 007268 152 DYEAFESRASILNEIMDALK-----NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEI 226 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~-----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 226 (610)
....|+|++..+..+..++. ......+.|+|++|+|||++|+.+++.... ..++++.+......++..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~-- 82 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAA-- 82 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHH--
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHH--
Confidence 45679999999988887775 234467899999999999999999987642 234554443333222221
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHhC--CCeEEEEEeCCCCcc--cchhhcCCCC--------C----------CCCCeE
Q 007268 227 ADKLGLKFDVESESGRARILYDRLKK--EERILVILDNIWENL--DLLDVGIPHG--------D----------DHKGCK 284 (610)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~~--~kr~LLVLDdv~~~~--~~~~l~~~l~--------~----------~~~gs~ 284 (610)
.+.. .++.+|+||+++... ....+...+. . ..++..
T Consensus 83 ----------------------~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 83 ----------------------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ----------------------HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ----------------------HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 1111 356788999997642 1111110000 0 012345
Q ss_pred EEEEecccccc-cccCCcc-ceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007268 285 VLFTARSEEVL-SGEMESR-KNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARAL 357 (610)
Q Consensus 285 IivTTR~~~va-~~~~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L 357 (610)
+|.||...... ....... ..+.+.+++.++..+++...+...... -..+....|++.++|.|..+..+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 77666654322 1112222 579999999999999998887432211 113567889999999998887776554
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=3.3e-10 Score=115.53 Aligned_cols=191 Identities=14% Similarity=0.099 Sum_probs=117.5
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhh
Q 007268 151 KDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKL 230 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (610)
.....++|++..++.|.+++..+..+.+.|+|++|+|||++|+.+++..........+++++.+....... .++++..+
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~ 96 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-VRNQIKHF 96 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-HHTHHHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-HHHHHHHH
Confidence 34567999999999999999876655599999999999999999998864321112345555444333222 22222211
Q ss_pred CCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEecccccc-cccCCccceecC
Q 007268 231 GLKFDVESESGRARILYDRLKKEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARSEEVL-SGEMESRKNFPV 307 (610)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~va-~~~~~~~~~~~l 307 (610)
..... .+..+++.++|+||++.. ..++.+...+.....++.+|+||+...-. .........+.+
T Consensus 97 ~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~ 163 (323)
T 1sxj_B 97 AQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRY 163 (323)
T ss_dssp HHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred Hhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEee
Confidence 10000 000245899999999764 23333332222234567888888664321 111233458999
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchH-HHHHHHHH
Q 007268 308 GFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPV-SIVTVARA 356 (610)
Q Consensus 308 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~i~~~ 356 (610)
.+++.++..+++...+...... -..+....|++.|+|.|. ++..+...
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 164 SKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999876421111 113567789999999995 45555443
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=1.4e-09 Score=110.97 Aligned_cols=189 Identities=14% Similarity=0.111 Sum_probs=116.1
Q ss_pred CCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhC
Q 007268 152 DYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLG 231 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (610)
....++|++..++.|..++..+..+.+.|+|++|+|||++|+.+++.......-...+.+..+.......+ ...+.
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--- 98 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REKVK--- 98 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHHHH---
T ss_pred CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHHHH---
Confidence 35679999999999999998766666999999999999999999988643210112334443322111111 01000
Q ss_pred CCCCCCChhHHHHHHHHH--HhCCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEecccccc-cccCCccceec
Q 007268 232 LKFDVESESGRARILYDR--LKKEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARSEEVL-SGEMESRKNFP 306 (610)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~--L~~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~va-~~~~~~~~~~~ 306 (610)
..... +..+++.++|+|+++.. ..+..+...+.....++++|+||...... .........+.
T Consensus 99 -------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 99 -------------EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp -------------HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred -------------HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 00000 11146789999999754 23333333222234567888888765321 11112234789
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHHh
Q 007268 307 VGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARALR 358 (610)
Q Consensus 307 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L~ 358 (610)
+.+++.++..+++...+...... -..+....|++.++|.|..+..+...+.
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999877432211 1235677899999999986655544443
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.89 E-value=1.7e-08 Score=102.39 Aligned_cols=186 Identities=13% Similarity=0.116 Sum_probs=115.7
Q ss_pred CCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh---HHHHHHHHH
Q 007268 152 DYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV---RKIQGEIAD 228 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~---~~~~~~i~~ 228 (610)
....++|++..++.|.+++..+..+.+.|+|++|+|||++|+.+++.......-...+.++.+..... .+....+..
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHh
Confidence 35678999999999999998766656999999999999999999987532210012333444432111 111111110
Q ss_pred hhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEeccccc-ccccCCcccee
Q 007268 229 KLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARSEEV-LSGEMESRKNF 305 (610)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v-a~~~~~~~~~~ 305 (610)
... +..+++.++|+|+++.. .....+...+.....++.+|+||....- ..........+
T Consensus 95 ~~~------------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i 156 (319)
T 2chq_A 95 TAP------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (319)
T ss_dssp SCC------------------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEE
T ss_pred cCC------------------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEE
Confidence 000 01246789999999754 2334444444334456778888765432 11112334589
Q ss_pred cCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHH
Q 007268 306 PVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARA 356 (610)
Q Consensus 306 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~ 356 (610)
.+.+++.++..+++...+......- ..+....|++.++|.|..+......
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~i-~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 157 RFKPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCCCB-CHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999998774322211 1356678889999999865544433
No 19
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.87 E-value=6.7e-08 Score=97.35 Aligned_cols=170 Identities=8% Similarity=0.032 Sum_probs=108.6
Q ss_pred CccccHHHHHHHHHHhc----CCCceEEEEEecCCchHHHHHHHHHHHhccCCC---C-C-eEEEEEeCCCCChHHHHHH
Q 007268 155 AFESRASILNEIMDALK----NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKL---F-D-QVVLSEVSESRDVRKIQGE 225 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~---f-~-~~~wv~vs~~~~~~~~~~~ 225 (610)
.+.||++++++|...|. .+..+.+.|+|++|+|||++++.+++....... . . ..+++++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 37799999999887765 567789999999999999999999998754211 1 1 4667777788888899999
Q ss_pred HHHhhCCCC-CCCChhHHHHHHHHHH--hCCCeEEEEEeCCCCcccchhhcCCC--C-CCCCCeEEEEEeccccccccc-
Q 007268 226 IADKLGLKF-DVESESGRARILYDRL--KKEERILVILDNIWENLDLLDVGIPH--G-DDHKGCKVLFTARSEEVLSGE- 298 (610)
Q Consensus 226 i~~~l~~~~-~~~~~~~~~~~l~~~L--~~~kr~LLVLDdv~~~~~~~~l~~~l--~-~~~~gs~IivTTR~~~va~~~- 298 (610)
|++++.... ........+..+...+ ..+++++++||+++....-+.+...+ + ......-||.++.........
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 999985432 1222234455555544 23578999999998653211111110 1 011122344445443221100
Q ss_pred ----C--CccceecCCCCCHHHHHHHHHHHhC
Q 007268 299 ----M--ESRKNFPVGFLKEEEAWSLFKKMAG 324 (610)
Q Consensus 299 ----~--~~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (610)
. -....+.+.|++.++-.+++.+++.
T Consensus 181 ~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 181 NIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 0 1125799999999999999998873
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.84 E-value=3e-08 Score=103.11 Aligned_cols=195 Identities=12% Similarity=0.138 Sum_probs=112.9
Q ss_pred CcCccccHHHHHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhC
Q 007268 153 YEAFESRASILNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLG 231 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (610)
...++||+..++.|..++..++ .+.+.|+|++|+|||++|+.+++.......+.. ...........+.....
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHTSCC
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhccCC
Confidence 4569999999999999887543 467899999999999999999987754321110 00000001111111000
Q ss_pred CC-----CCCCChhHHHHHHHHHHh----CCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEecccc-cccccC
Q 007268 232 LK-----FDVESESGRARILYDRLK----KEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARSEE-VLSGEM 299 (610)
Q Consensus 232 ~~-----~~~~~~~~~~~~l~~~L~----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-va~~~~ 299 (610)
.. .......+.+..+.+.+. .+++.+||+|+++.. ..++.+...+.....+..+|++|.... +.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 00 000001112233333332 246789999999754 233333322222334567777776443 221122
Q ss_pred CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHH
Q 007268 300 ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVAR 355 (610)
Q Consensus 300 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~ 355 (610)
.....+.+.+++.++..+++...+....... ..+....|++.++|.|..+..+..
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~-~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3346899999999999999988763211111 135567899999999987766543
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.75 E-value=1.7e-08 Score=93.92 Aligned_cols=154 Identities=14% Similarity=0.181 Sum_probs=88.3
Q ss_pred CCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCC-----CCeEEEEEeCCCCChHHHHHHH
Q 007268 152 DYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKL-----FDQVVLSEVSESRDVRKIQGEI 226 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----f~~~~wv~vs~~~~~~~~~~~i 226 (610)
....++||+++++.+.+++.....+.+.|+|++|+|||+||+.+++....... ....++++++..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 89 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL---------- 89 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH----------
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH----------
Confidence 34678999999999999998776778999999999999999999988643211 124455543211
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHH-hCCCeEEEEEeCCCCcc---------cchhhcCCCCCCCCCeEEEEEecccccc-
Q 007268 227 ADKLGLKFDVESESGRARILYDRL-KKEERILVILDNIWENL---------DLLDVGIPHGDDHKGCKVLFTARSEEVL- 295 (610)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L-~~~kr~LLVLDdv~~~~---------~~~~l~~~l~~~~~gs~IivTTR~~~va- 295 (610)
.. +.. ........+..+.+.+ ..+++.+|||||++... .+..+...+.. ..+..+|+||......
T Consensus 90 ~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~ 165 (195)
T 1jbk_A 90 VA--GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQ 165 (195)
T ss_dssp HT--TTC-SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHHH
T ss_pred hc--cCC-ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHHH
Confidence 00 000 0000111222333333 23568899999997541 11111111111 1234577776654311
Q ss_pred -----cccCCccceecCCCCCHHHHHHHH
Q 007268 296 -----SGEMESRKNFPVGFLKEEEAWSLF 319 (610)
Q Consensus 296 -----~~~~~~~~~~~l~~L~~~ea~~Lf 319 (610)
.........+.+.+++.++..+++
T Consensus 166 ~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 166 YIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 111122336889999888876553
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.61 E-value=4.2e-07 Score=90.70 Aligned_cols=182 Identities=18% Similarity=0.236 Sum_probs=107.3
Q ss_pred CCCCcCccccHHHHHHHHHHhcC-------------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 150 NKDYEAFESRASILNEIMDALKN-------------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~~-------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
......++|.++.++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.... ..+.+..+.-
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~ 87 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSEL 87 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGG
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHH
Confidence 34456789999999998877642 34567999999999999999999987642 2333333221
Q ss_pred CChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc----------------cchhhcCCCC--C
Q 007268 217 RDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL----------------DLLDVGIPHG--D 278 (610)
Q Consensus 217 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~----------------~~~~l~~~l~--~ 278 (610)
.. .. ..........+.......++.+|+||+++... .+..+...+. .
T Consensus 88 ~~--------------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 88 VK--------------KF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp CC--------------CS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred HH--------------hc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 11 00 00112223344444444567899999996431 1111111110 1
Q ss_pred CCCCeEEEEEecccccccc-cC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCC-chHHHHHH
Q 007268 279 DHKGCKVLFTARSEEVLSG-EM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAG-LPVSIVTV 353 (610)
Q Consensus 279 ~~~gs~IivTTR~~~va~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~i 353 (610)
...+..||.||........ .. .-...+.+.+.+.++..+++...+........ .....|+..+.| .|-.|..+
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHHH
Confidence 2345677888875543211 11 12347999999999999999988853322111 123567778777 45455544
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.57 E-value=6.6e-08 Score=93.69 Aligned_cols=176 Identities=11% Similarity=0.106 Sum_probs=105.3
Q ss_pred CCcCcccc---HHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHH
Q 007268 152 DYEAFESR---ASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIAD 228 (610)
Q Consensus 152 ~~~~~vGR---~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (610)
....|+|+ +..++.+..+...+..+.+.|+|++|+|||+||+.+++..... ...+.|++++..... +..
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~~ 97 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------STA 97 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CGG
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HHH
Confidence 34567763 4667777777766567889999999999999999999887654 345667766542110 000
Q ss_pred hhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc----chhhcCCCCC-CCCC-eEEEEEecccccc-----cc
Q 007268 229 KLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD----LLDVGIPHGD-DHKG-CKVLFTARSEEVL-----SG 297 (610)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~----~~~l~~~l~~-~~~g-s~IivTTR~~~va-----~~ 297 (610)
. ...+ .++.+|||||++.... ...+...+.. ...+ .++|+||+...-. ..
T Consensus 98 ~-----------------~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 98 L-----------------LEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp G-----------------GTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred H-----------------HHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 0 0011 2467999999975421 1222111100 0112 2477777654310 00
Q ss_pred cC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHH
Q 007268 298 EM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVAR 355 (610)
Q Consensus 298 ~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~ 355 (610)
.. .....+.+.+++.++..+++...+..... .-..+....|++.++|.+-.+..+..
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 01 11267999999999999999987742111 11135677889999999876665543
No 24
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.57 E-value=1.4e-06 Score=85.68 Aligned_cols=184 Identities=17% Similarity=0.195 Sum_probs=102.6
Q ss_pred CCcCccccHHHHHHHHHHhc---C---------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh
Q 007268 152 DYEAFESRASILNEIMDALK---N---------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV 219 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~---~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~ 219 (610)
....++|.+..++.|.+++. . ...+.+.|+|++|+|||++|+.+++.... ..+.++.+.-.+.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~~ 78 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFVEV 78 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHHhh
Confidence 34578898888777755442 1 23466889999999999999999987642 2344444432110
Q ss_pred HHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc-------------c----chhhcCCCC--CCC
Q 007268 220 RKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL-------------D----LLDVGIPHG--DDH 280 (610)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~-------------~----~~~l~~~l~--~~~ 280 (610)
.. .........+........+.+|+||+++... . +..+...+. ...
T Consensus 79 --------------~~-~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 79 --------------IG-GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp --------------ST-THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred --------------cc-ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 00 0011223333444433467999999997541 0 111111111 112
Q ss_pred CCeEEEEEeccccccc-ccC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchH-HHHHHHH
Q 007268 281 KGCKVLFTARSEEVLS-GEM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPV-SIVTVAR 355 (610)
Q Consensus 281 ~gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~i~~ 355 (610)
.+..||.||....... ... .-...+.+.+.+.++-.+++...+...............+++.+.|.+- .|..+..
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 3556777776544221 111 1235788999999999999988874322222222334678888888754 4544433
No 25
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=1.7e-07 Score=96.67 Aligned_cols=196 Identities=14% Similarity=0.150 Sum_probs=112.6
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCC-CeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLF-DQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++|+++.++.|..++..+..+.+.|+|++|+||||+|+.+++.......+ ..++.++.+.......+ .+....
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 112 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKN 112 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHH
Confidence 3456789999999999999987655559999999999999999999875421001 12334444443333222 221111
Q ss_pred hC-CCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEecccc-cccccCCcccee
Q 007268 230 LG-LKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARSEE-VLSGEMESRKNF 305 (610)
Q Consensus 230 l~-~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~~~-va~~~~~~~~~~ 305 (610)
+. ........ . .......+++-+|++|+++... ....+...+.......++|++|.... +..........+
T Consensus 113 ~~~~~~~~~~~-~----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 113 FARLTVSKPSK-H----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HHHSCCCCCCT-T----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred Hhhhcccccch-h----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 10 00000000 0 0000112355799999986542 22223222222234567777775443 211112223478
Q ss_pred cCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 306 PVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 306 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
.+.+++.++....+...+...... -..+....|++.++|.|..+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVK-CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999999877422111 11356788999999999865444
No 26
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.51 E-value=1.4e-06 Score=92.48 Aligned_cols=182 Identities=15% Similarity=0.178 Sum_probs=109.0
Q ss_pred CCCcCccccHHHH---HHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHH
Q 007268 151 KDYEAFESRASIL---NEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 151 ~~~~~~vGR~~~~---~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
.....++|.+..+ ..|...+..+....+.|+|++|+||||||+.+++..... | ..++... ....+ ++.++
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~--f---~~l~a~~-~~~~~-ir~~~ 95 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD--V---ERISAVT-SGVKE-IREAI 95 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE--E---EEEETTT-CCHHH-HHHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC--e---EEEEecc-CCHHH-HHHHH
Confidence 4457799999988 678888877777889999999999999999999876432 2 2222211 12221 11111
Q ss_pred HhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEE-Eecccc--cccccCCcc
Q 007268 228 DKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLF-TARSEE--VLSGEMESR 302 (610)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~Iiv-TTR~~~--va~~~~~~~ 302 (610)
.........+++.+|+||+++... ..+.+...+.. + ...+|. ||.+.. +........
T Consensus 96 ----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~ 157 (447)
T 3pvs_A 96 ----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRA 157 (447)
T ss_dssp ----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTE
T ss_pred ----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCce
Confidence 111222223578999999997652 23333222221 1 233444 444432 111222344
Q ss_pred ceecCCCCCHHHHHHHHHHHhCCC------CCCchHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007268 303 KNFPVGFLKEEEAWSLFKKMAGDY------VEGSELEEVARNVVEECAGLPVSIVTVARAL 357 (610)
Q Consensus 303 ~~~~l~~L~~~ea~~Lf~~~~~~~------~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L 357 (610)
.++.+.+++.++...++.+.+... ....-..+....|++.++|.+-.+..+...+
T Consensus 158 ~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a 218 (447)
T 3pvs_A 158 RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMM 218 (447)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 588999999999999999887421 1111224567788899999987655544433
No 27
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=5.1e-07 Score=93.12 Aligned_cols=198 Identities=12% Similarity=0.107 Sum_probs=107.0
Q ss_pred CCcCccccHHHHHHHHHHh-cCCCceEEEEEecCCchHHHHHHHHHHHhccCCC----CCe-------------------
Q 007268 152 DYEAFESRASILNEIMDAL-KNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKL----FDQ------------------- 207 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----f~~------------------- 207 (610)
....++|++..++.+..++ ..++.+.+.|+|+.|+||||+|+.++........ +++
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 3567899999999999998 6555444999999999999999999985422110 010
Q ss_pred -EEEEEeCCCC-ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCe
Q 007268 208 -VVLSEVSESR-DVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGC 283 (610)
Q Consensus 208 -~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs 283 (610)
.+.+..+... ......++++..+........ .. .+ ..+. +++-++|||++.... ....+...+.....++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~-~l-s~l~-~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF---QD-SK-DGLA-HRYKCVIINEANSLTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTE
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhccccc---cc-cc-cccC-CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCC
Confidence 1111111100 000012222222211100000 00 00 0011 356799999997642 1222222111122457
Q ss_pred EEEEEecccc-cccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHH
Q 007268 284 KVLFTARSEE-VLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVAR 355 (610)
Q Consensus 284 ~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~ 355 (610)
.+|++|.... +..........+.+.+++.++..+.+...+......-...+....|++.++|.+-.+..+..
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7888776643 22222233468999999999999999987732111100024567889999999876555443
No 28
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.46 E-value=1.1e-05 Score=82.06 Aligned_cols=184 Identities=17% Similarity=0.175 Sum_probs=107.3
Q ss_pred CCCcCccccHHHHHHHHHHhc------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 151 KDYEAFESRASILNEIMDALK------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
.....+.|-++.++.|.+.+. ....+-|.|+|++|+|||+||+.+++.... ...+.++.+.-.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHHh
Confidence 345678898888888776652 123478999999999999999999987621 1233444432211
Q ss_pred hHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc-------------chhhc---CCCCCCCCC
Q 007268 219 VRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD-------------LLDVG---IPHGDDHKG 282 (610)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~-------------~~~l~---~~l~~~~~g 282 (610)
... ......+..+.......++.+|+||+++.... ...+. ..+.....+
T Consensus 85 --------------~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 --------------KWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp --------------SSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred --------------hhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 001 11223344454444445789999999975410 01111 111112345
Q ss_pred eEEEEEeccccccc-ccC-CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCc-hHHHHHHH
Q 007268 283 CKVLFTARSEEVLS-GEM-ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGL-PVSIVTVA 354 (610)
Q Consensus 283 s~IivTTR~~~va~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~i~ 354 (610)
..||.||....... ... .-...+.+...+.++-.+++..++....... .......|++.+.|. +-.|..+.
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56666775543221 011 2235688899999999999998875432211 124567788888886 44455444
No 29
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.45 E-value=1.4e-06 Score=94.61 Aligned_cols=190 Identities=13% Similarity=0.118 Sum_probs=109.4
Q ss_pred CCCcCccccHHHHHHHHHHhcC-----------------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEe
Q 007268 151 KDYEAFESRASILNEIMDALKN-----------------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEV 213 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~-----------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~v 213 (610)
.....++|++..++.|.+|+.. +..+.+.|+|++|+|||++|+.+++... + .++.+++
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~ 110 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNA 110 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeC
Confidence 3456799999999999999864 1347899999999999999999998873 2 3455565
Q ss_pred CCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHH-hCCCeEEEEEeCCCCccc-----chhhcCCCCCCCCCeEEEE
Q 007268 214 SESRDVRKIQGEIADKLGLKFDVESESGRARILYDRL-KKEERILVILDNIWENLD-----LLDVGIPHGDDHKGCKVLF 287 (610)
Q Consensus 214 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L-~~~kr~LLVLDdv~~~~~-----~~~l~~~l~~~~~gs~Iiv 287 (610)
+...... +....+.......... .........+ ..+++.+|+||+++.... +..+...+.. .+..||+
T Consensus 111 s~~~~~~-~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIl 184 (516)
T 1sxj_A 111 SDVRSKT-LLNAGVKNALDNMSVV---GYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLIL 184 (516)
T ss_dssp TSCCCHH-HHHHTGGGGTTBCCST---TTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEE
T ss_pred CCcchHH-HHHHHHHHHhccccHH---HHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEE
Confidence 5544433 2232222211100000 0000000000 125789999999975421 1222111111 2334666
Q ss_pred Eeccccc--ccccCCccceecCCCCCHHHHHHHHHHHhCC--CCCCchHHHHHHHHHHHcCCch-HHHHHHH
Q 007268 288 TARSEEV--LSGEMESRKNFPVGFLKEEEAWSLFKKMAGD--YVEGSELEEVARNVVEECAGLP-VSIVTVA 354 (610)
Q Consensus 288 TTR~~~v--a~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~I~~~c~GlP-Lai~~i~ 354 (610)
++..... ..........+.+.+++.++..+++...+.. ...++ +....|++.++|.+ -++..+.
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 5554321 1112233457999999999999999887631 11222 34668889999955 4555543
No 30
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.43 E-value=2.2e-06 Score=84.97 Aligned_cols=195 Identities=14% Similarity=0.177 Sum_probs=101.9
Q ss_pred CccccHHHHHHHHH-------Hhc---CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHH
Q 007268 155 AFESRASILNEIMD-------ALK---NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQG 224 (610)
Q Consensus 155 ~~vGR~~~~~~L~~-------~L~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (610)
.++|....+++++. .+. ....+.+.|+|++|+|||+||+.+++.... . .+.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~----~-~~~i~~~~~~------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF----P-FIKICSPDKM------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC----S-EEEEECGGGC-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC----C-EEEEeCHHHh-------
Confidence 46676666555544 332 455678999999999999999999987532 2 2223322210
Q ss_pred HHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc-----------cc-chhh---cCCCCCCCCCeEEEEEe
Q 007268 225 EIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN-----------LD-LLDV---GIPHGDDHKGCKVLFTA 289 (610)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~-----------~~-~~~l---~~~l~~~~~gs~IivTT 289 (610)
.+. ........+..+.......++.+|+||+++.. .. ...+ ............||.||
T Consensus 102 -----~g~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 102 -----IGF--SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp -----TTC--CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred -----cCC--chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 010 00000112233333333356899999998642 11 1112 11111122344566677
Q ss_pred cccccccc--cCCc-cceecCCCCCH-HHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCC------chHHHHHHHHHHhc
Q 007268 290 RSEEVLSG--EMES-RKNFPVGFLKE-EEAWSLFKKMAGDYVEGSELEEVARNVVEECAG------LPVSIVTVARALRN 359 (610)
Q Consensus 290 R~~~va~~--~~~~-~~~~~l~~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~G------lPLai~~i~~~L~~ 359 (610)
........ .... ...+.+++++. ++...++.+.. . .+ .+....|++.+.| .+-++..+-.....
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~--~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-N--FK---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-C--SC---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-C--CC---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh
Confidence 66533211 1122 45688999988 66666666532 1 11 3456778888877 33444333333222
Q ss_pred CCHHHHHHHHHHhcC
Q 007268 360 KGIREWKDALEQLRR 374 (610)
Q Consensus 360 ~~~~~w~~~l~~l~~ 374 (610)
.....+..+++.+..
T Consensus 249 ~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 249 DPEYRVRKFLALLRE 263 (272)
T ss_dssp CGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 244556666655543
No 31
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.42 E-value=1.3e-06 Score=89.00 Aligned_cols=179 Identities=11% Similarity=0.075 Sum_probs=102.5
Q ss_pred CCCcCccccHHHHHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 151 KDYEAFESRASILNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
.....++|++..++.|.+++..+. ..++.+.|++|+|||++|+.+++.... .++.++.+.. ... .++.++..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~-~~~-~i~~~~~~ 95 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDC-KID-FVRGPLTN 95 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTC-CHH-HHHTHHHH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEccccc-CHH-HHHHHHHH
Confidence 445789999999999999998554 367788888999999999999987632 3455554432 222 22221111
Q ss_pred hCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc---cchhhcCCCCCCCCCeEEEEEecccccc-cccCCcccee
Q 007268 230 LGLKFDVESESGRARILYDRLKKEERILVILDNIWENL---DLLDVGIPHGDDHKGCKVLFTARSEEVL-SGEMESRKNF 305 (610)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~---~~~~l~~~l~~~~~gs~IivTTR~~~va-~~~~~~~~~~ 305 (610)
...... ..+++.+|++|+++... ....+...+.....++++|+||....-. .........+
T Consensus 96 ~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i 160 (324)
T 3u61_B 96 FASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVI 160 (324)
T ss_dssp HHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEE
T ss_pred HHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEE
Confidence 100000 01368899999998654 2222222111112356788877664421 1112233579
Q ss_pred cCCCCCHHHHHHHHHH-------HhCCCCCCchHHHHHHHHHHHcCCchHHHH
Q 007268 306 PVGFLKEEEAWSLFKK-------MAGDYVEGSELEEVARNVVEECAGLPVSIV 351 (610)
Q Consensus 306 ~l~~L~~~ea~~Lf~~-------~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 351 (610)
.+.+++.++-.+++.. .+......-...+....|++.++|.+-.+.
T Consensus 161 ~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 161 TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHH
Confidence 9999998885443322 221111111002556778888888775433
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.41 E-value=6.3e-06 Score=85.08 Aligned_cols=184 Identities=12% Similarity=0.122 Sum_probs=106.9
Q ss_pred CCcCccccHHHHHHHHHHhc------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh
Q 007268 152 DYEAFESRASILNEIMDALK------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV 219 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~ 219 (610)
....++|.+..++.|.+.+. ....+.|.|+|++|+|||+||+.+++.... ..+.++.+.-...
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTSK 156 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCCS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhcc
Confidence 34678999999998887763 134578999999999999999999987532 3345554432110
Q ss_pred HHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc-------------cchhhcCCC----CCCCCC
Q 007268 220 RKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL-------------DLLDVGIPH----GDDHKG 282 (610)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~-------------~~~~l~~~l----~~~~~g 282 (610)
.. .........+.......++.+|+||+++... ....+...+ .....+
T Consensus 157 --------------~~-g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 157 --------------WV-GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp --------------ST-THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred --------------cc-chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00 0011223333333333567999999985320 011111111 111234
Q ss_pred eEEEEEecccccc-cccC-CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCC-chHHHHHHHHH
Q 007268 283 CKVLFTARSEEVL-SGEM-ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAG-LPVSIVTVARA 356 (610)
Q Consensus 283 s~IivTTR~~~va-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~i~~~ 356 (610)
..||.||...... .... .....+.+...+.++..+++...+...... -..+....|++.+.| .+-.|..+...
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5566677554321 1111 223467889999999999998877432111 113566788899988 55666665543
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.38 E-value=2.5e-06 Score=87.36 Aligned_cols=175 Identities=15% Similarity=0.170 Sum_probs=104.4
Q ss_pred CCcCccccHHHHHHHHHHhc-----CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHH
Q 007268 152 DYEAFESRASILNEIMDALK-----NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEI 226 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~-----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 226 (610)
....++|++..++.+..++. ......|.|+|++|+|||+||+.+++..... .+.++.+.......
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~----- 96 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGD----- 96 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchhH-----
Confidence 45679999999999888876 2345678999999999999999998875422 23333332221111
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCC------------------CCCCCCeEEE
Q 007268 227 ADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPH------------------GDDHKGCKVL 286 (610)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l------------------~~~~~gs~Ii 286 (610)
....... ..+..+|+||+++... ....+...+ ....++..+|
T Consensus 97 ----------------~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 97 ----------------LAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp ----------------HHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred ----------------HHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1111111 1356789999987542 111111000 0011235566
Q ss_pred EEecccccc-cccCC-ccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHH
Q 007268 287 FTARSEEVL-SGEME-SRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVAR 355 (610)
Q Consensus 287 vTTR~~~va-~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~ 355 (610)
.+|...... ..... ....+.+.+++.++...++.+.+..... .-..+....|++.+.|.|-.+..+..
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 666654321 11111 2367999999999999999987742221 11235677888899999965554443
No 34
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.37 E-value=5.4e-06 Score=84.27 Aligned_cols=184 Identities=19% Similarity=0.219 Sum_probs=108.1
Q ss_pred CCCCCcCccccHHHHHHHHHHhc------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 149 PNKDYEAFESRASILNEIMDALK------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 149 ~~~~~~~~vGR~~~~~~L~~~L~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
|......++|.+..++.|.+.+. ....+-+.|+|++|+|||+||+.+++.... ..+.++.+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~v~~~~- 86 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSSD- 86 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC-----EEEEEEHHH-
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC-----CEEEEchHH-
Confidence 34446778999999999988772 123467999999999999999999987642 223333321
Q ss_pred CChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc-------------chhhc---CCCCCCC
Q 007268 217 RDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD-------------LLDVG---IPHGDDH 280 (610)
Q Consensus 217 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~-------------~~~l~---~~l~~~~ 280 (610)
+ .... .......+..+.......++.+|+||+++.... ...+. ..+....
T Consensus 87 -----l----~~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 87 -----L----VSKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp -----H----HTTT-----GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred -----H----hhcc-----cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 1 1100 011123344444444445779999999974311 11111 1111233
Q ss_pred CCeEEEEEeccccccccc--CCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCc-hHHHHHH
Q 007268 281 KGCKVLFTARSEEVLSGE--MESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGL-PVSIVTV 353 (610)
Q Consensus 281 ~gs~IivTTR~~~va~~~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~i 353 (610)
.+..||.||......... ..-...+.+...+.++-.+++...+........ ......|++.+.|. +-.|..+
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT-KEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-HHHHHHHHHTTTTCCHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 456666677654322100 012356788889999999999998864332211 24556788888774 4444444
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.36 E-value=4.9e-06 Score=86.18 Aligned_cols=197 Identities=10% Similarity=0.057 Sum_probs=104.0
Q ss_pred CcCccccHHHHHH---HHHHhcCCC--ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeC----CCCChHHHH
Q 007268 153 YEAFESRASILNE---IMDALKNPN--VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVS----ESRDVRKIQ 223 (610)
Q Consensus 153 ~~~~vGR~~~~~~---L~~~L~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs----~~~~~~~~~ 223 (610)
...|+|++..++. +...+..+. .+.+.|+|++|+|||++|+.+++.......| +.+... ......+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 5679999988766 445554433 3589999999999999999999987643222 222222 222333344
Q ss_pred HHHHHhh-CC--------------------CC--------C--CCChhH---HHHHHHHHH-hCCC----eEEEEEeCCC
Q 007268 224 GEIADKL-GL--------------------KF--------D--VESESG---RARILYDRL-KKEE----RILVILDNIW 264 (610)
Q Consensus 224 ~~i~~~l-~~--------------------~~--------~--~~~~~~---~~~~l~~~L-~~~k----r~LLVLDdv~ 264 (610)
.+.+... +. .. . ...... .+....... ..++ +.+|+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 3333221 10 00 0 000111 111112211 1233 4599999997
Q ss_pred Ccc--cchhhcCCCCCCCCCeEEEEEeccc-------------ccccccCCccceecCCCCCHHHHHHHHHHHhCCCCCC
Q 007268 265 ENL--DLLDVGIPHGDDHKGCKVLFTARSE-------------EVLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEG 329 (610)
Q Consensus 265 ~~~--~~~~l~~~l~~~~~gs~IivTTR~~-------------~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 329 (610)
... ....+...+...... .++++|... .+..........+.+.+++.++..+++...+......
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 542 222232222222222 344444311 1111112233458999999999999999887422111
Q ss_pred chHHHHHHHHHHHcC-CchHHHHHHH
Q 007268 330 SELEEVARNVVEECA-GLPVSIVTVA 354 (610)
Q Consensus 330 ~~~~~~~~~I~~~c~-GlPLai~~i~ 354 (610)
-..+....|++.+. |.|-.+..+.
T Consensus 279 -~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 279 -MSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp -BCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred -CCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 12356778888887 7776554443
No 36
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.35 E-value=4.5e-06 Score=85.32 Aligned_cols=171 Identities=12% Similarity=0.082 Sum_probs=103.2
Q ss_pred cHHHHHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHhccCC--------------------CCCeEEEEEeC---
Q 007268 159 RASILNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKAESDK--------------------LFDQVVLSEVS--- 214 (610)
Q Consensus 159 R~~~~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~f~~~~wv~vs--- 214 (610)
.++..+.|...+..++ .+.+.++|+.|+|||++|+.+++...... +++ ..++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 3556677777777655 46799999999999999999998764321 122 2233221
Q ss_pred CCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEeccc
Q 007268 215 ESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARSE 292 (610)
Q Consensus 215 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~~ 292 (610)
......+ .+++.+.+...+. .+++-++|+|+++... ..+.+...+.....++.+|++|.+.
T Consensus 86 ~~~~i~~-ir~l~~~~~~~~~----------------~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 86 NTLGVDA-VREVTEKLNEHAR----------------LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SSBCHHH-HHHHHHHTTSCCT----------------TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCCHHH-HHHHHHHHhhccc----------------cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 1112211 2223222221110 1467899999997542 2333332232233456777776654
Q ss_pred c-cccccCCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 293 E-VLSGEMESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 293 ~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
. +..........+.+.+++.++..+.+..... . + .+.+..+++.++|.|..+..+
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--~-~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT--M-S---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC--C-C---HHHHHHHHHHTTTCHHHHHHT
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC--C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 3 3322234456899999999999999988751 1 1 245678999999999766443
No 37
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.33 E-value=1.5e-05 Score=83.30 Aligned_cols=184 Identities=15% Similarity=0.162 Sum_probs=105.5
Q ss_pred CCCCcCccccHHHHHHHHHHhc------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 150 NKDYEAFESRASILNEIMDALK------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
+.....++|.+..++.|.+++. ....+.|.|+|++|+|||+||+.+++.... ..+.++.+.-.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhh
Confidence 3445679999999999988773 123468999999999999999999887532 23444443321
Q ss_pred ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--------c-----chhhcCCC---C-CCC
Q 007268 218 DVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--------D-----LLDVGIPH---G-DDH 280 (610)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--------~-----~~~l~~~l---~-~~~ 280 (610)
.. . . ......+..+........+.+|+||+++... . ...+...+ . ...
T Consensus 186 ~~--~------------~-g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 186 SK--Y------------V-GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc--c------------c-chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 10 0 0 0111223344444443467899999996430 0 01111100 0 112
Q ss_pred CCeEEEEEecccccc-cccC-CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchH-HHHHHH
Q 007268 281 KGCKVLFTARSEEVL-SGEM-ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPV-SIVTVA 354 (610)
Q Consensus 281 ~gs~IivTTR~~~va-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~i~ 354 (610)
....||.||...... .... .....+.+...+.++-.+++...+......- ..+....|++.+.|..- +|..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l-~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL-TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345566666553322 1111 1224688999999999999998875432211 12456788889888544 555554
No 38
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=3.4e-06 Score=86.52 Aligned_cols=184 Identities=13% Similarity=0.113 Sum_probs=104.5
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhh
Q 007268 151 KDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKL 230 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (610)
.....++|.+..++.|..++..++.+.+.++|++|+||||+|+.+++.......-..+..++.+.......+. +++..+
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir-~~i~~~ 100 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVR-NQIKDF 100 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHH-THHHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHH-HHHHHH
Confidence 3445678999999999988887765559999999999999999999886432100122333333322222111 111111
Q ss_pred CCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCCCCCCeEEEEEecccc-cccccCCccceecC
Q 007268 231 GLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGDDHKGCKVLFTARSEE-VLSGEMESRKNFPV 307 (610)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l 307 (610)
..... ...+.+-++|+|+++... ..+.+...+......+.+|++|.... +..........+.+
T Consensus 101 ~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~ 166 (340)
T 1sxj_C 101 ASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRF 166 (340)
T ss_dssp HHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred Hhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEec
Confidence 00000 001246789999986432 22222221111224566777765432 21111223457899
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHH
Q 007268 308 GFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSI 350 (610)
Q Consensus 308 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (610)
.+++.++..+.+...+......- ..+..+.|++.++|.+--+
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~i-~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 167 QPLPQEAIERRIANVLVHEKLKL-SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCCB-CHHHHHHHHHHHTTCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 99999999998887763211111 1345677888889887643
No 39
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.28 E-value=2.4e-05 Score=83.17 Aligned_cols=185 Identities=17% Similarity=0.182 Sum_probs=105.6
Q ss_pred CCCCcCccccHHHHHHHHHHhc------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 150 NKDYEAFESRASILNEIMDALK------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
......++|.+..++.|.+.+. ....+.|.|+|++|+|||+||+.+++.... ...+.++.+.-.
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~v~~~~l~ 205 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLV 205 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEEECCC---
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEEEeHHHHH
Confidence 3345678999999988887762 123478999999999999999999987621 122333332211
Q ss_pred ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc-------------cchhhcCCCCC---CCC
Q 007268 218 DVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL-------------DLLDVGIPHGD---DHK 281 (610)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~-------------~~~~l~~~l~~---~~~ 281 (610)
... .+. ....+..+.......++.+|+||+++... ....+...+.. ...
T Consensus 206 ------~~~---~g~------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 206 ------SKW---LGE------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ---------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred ------hhh---cch------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 110 110 01123334444444578999999997541 01122222211 234
Q ss_pred CeEEEEEeccccccc-ccC-CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCc-hHHHHHHH
Q 007268 282 GCKVLFTARSEEVLS-GEM-ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGL-PVSIVTVA 354 (610)
Q Consensus 282 gs~IivTTR~~~va~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~i~ 354 (610)
+..||.||....... ... .....+.+...+.++-..+|..++....... .......|++.+.|. +-.|..+.
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 566676776543221 111 2234778888899999999998875432211 124556788888884 44454443
No 40
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.27 E-value=3e-05 Score=77.64 Aligned_cols=184 Identities=16% Similarity=0.181 Sum_probs=105.1
Q ss_pred CCCCcCccccHHHHHHHHHHhcC------------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 150 NKDYEAFESRASILNEIMDALKN------------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~~------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
+.....++|.+..++.|.+++.. ...+.+.|+|++|+|||++|+.+++.... ..+.++.+.-.
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~ 91 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLT 91 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHh
Confidence 33456789999999998887631 23578999999999999999999987632 23344443321
Q ss_pred ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc-------------chhhc---CCCCC--C
Q 007268 218 DVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD-------------LLDVG---IPHGD--D 279 (610)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~-------------~~~l~---~~l~~--~ 279 (610)
. .. ..........+.......++.+|+||+++.... ...+. ..++. .
T Consensus 92 ~--------------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 92 S--------------KY-VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp S--------------SS-CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred h--------------cc-cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 1 00 011222333344444345679999999964311 00110 11111 1
Q ss_pred CCCeEEEEEeccccccc-ccC-CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchH-HHHHHH
Q 007268 280 HKGCKVLFTARSEEVLS-GEM-ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPV-SIVTVA 354 (610)
Q Consensus 280 ~~gs~IivTTR~~~va~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~i~ 354 (610)
+.+..||.||....... ... .....+.+...+.++...++...+......- ..+....|++.+.|.+- ++..+.
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL-DTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23456666776543211 001 1224677888888888888887764321111 12456778888988775 554443
No 41
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.27 E-value=1.4e-06 Score=87.87 Aligned_cols=152 Identities=12% Similarity=0.093 Sum_probs=86.4
Q ss_pred CccccHHHHHHHHHHhc---------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCC--eEEEEEeCCCC
Q 007268 155 AFESRASILNEIMDALK---------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFD--QVVLSEVSESR 217 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~---------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~--~~~wv~vs~~~ 217 (610)
.++|.+..++.|.+++. ......+.|+|++|+|||++|+.+++......... ..+.++.+.-
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l- 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL- 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh-
Confidence 47788888877765543 23445799999999999999999988775432222 2333332211
Q ss_pred ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc-----------ccchhhcCCCCCCCCCeEEE
Q 007268 218 DVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN-----------LDLLDVGIPHGDDHKGCKVL 286 (610)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~-----------~~~~~l~~~l~~~~~gs~Ii 286 (610)
..... .........+.... +..+|+||+++.. .....+...+.....+..||
T Consensus 111 -------------~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 111 -------------VGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp -------------CCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred -------------hhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 00000 01111222222222 3469999999733 12223322222234456778
Q ss_pred EEecccccc------cccC-CccceecCCCCCHHHHHHHHHHHhC
Q 007268 287 FTARSEEVL------SGEM-ESRKNFPVGFLKEEEAWSLFKKMAG 324 (610)
Q Consensus 287 vTTR~~~va------~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (610)
+||...... .... .....+.+++++.++-.+++...+.
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 887543210 0011 1126799999999999999988764
No 42
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.23 E-value=9e-06 Score=83.80 Aligned_cols=183 Identities=18% Similarity=0.200 Sum_probs=104.8
Q ss_pred CCCcCccccHHHHHHHHHHhc------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 151 KDYEAFESRASILNEIMDALK------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
.....++|.+..++.|.+.+. ....+-|.|+|++|+|||+||+.+++.... ..+.++.+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-----~~~~v~~~---- 118 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSS---- 118 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-----EEEEEEHH----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEeeHH----
Confidence 345678899988888887762 122356889999999999999999998742 22333322
Q ss_pred hHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc-------------chhhcCC---CCCCCCC
Q 007268 219 VRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD-------------LLDVGIP---HGDDHKG 282 (610)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~-------------~~~l~~~---l~~~~~g 282 (610)
++ .... . ......+..+.......++.+|+||+++.... ...+... +.....+
T Consensus 119 --~l----~~~~----~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 --DL----VSKW----M-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp --HH----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred --HH----hhhh----c-chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 11 1110 0 11123344444444445789999999974321 1111111 1112335
Q ss_pred eEEEEEeccccccc-ccC-CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCc-hHHHHHHH
Q 007268 283 CKVLFTARSEEVLS-GEM-ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGL-PVSIVTVA 354 (610)
Q Consensus 283 s~IivTTR~~~va~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~i~ 354 (610)
..||.||....... ... .-...+.+...+.++-.+++..++....... .......|++.+.|. +-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56666776543211 011 2235678899999999999998886432211 124566788888874 44454443
No 43
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.23 E-value=2.1e-06 Score=79.18 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=43.8
Q ss_pred CCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 152 DYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
....++||+.+++.+.+++.....+.+.|+|++|+|||+||+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34678999999999999998776778899999999999999999988643
No 44
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.22 E-value=6.8e-06 Score=87.99 Aligned_cols=151 Identities=13% Similarity=0.174 Sum_probs=88.0
Q ss_pred CCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCC----C-eEEEEEeCCCCChHHHHHHH
Q 007268 152 DYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLF----D-QVVLSEVSESRDVRKIQGEI 226 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f----~-~~~wv~vs~~~~~~~~~~~i 226 (610)
...+++||+.++..+...+......-+.|+|++|+|||++|+.+++........ + .++.++++..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~---------- 247 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTK---------- 247 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCcc----------
Confidence 345799999999999999986666678899999999999999999986432111 1 1222332200
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEecccc------cccccCC
Q 007268 227 ADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEE------VLSGEME 300 (610)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~------va~~~~~ 300 (610)
. .+ ........+...+...++.+|++| ........+...+. ....++|.+|.... .......
T Consensus 248 ---~----~g-~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 248 ---Y----RG-EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred ---c----cc-hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 0 00 001223344455554567899999 22222222333322 22345666665543 1111112
Q ss_pred ccceecCCCCCHHHHHHHHHHHhC
Q 007268 301 SRKNFPVGFLKEEEAWSLFKKMAG 324 (610)
Q Consensus 301 ~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (610)
....+.+++.+.++..+++...+.
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHH
Confidence 334799999999999999998764
No 45
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.16 E-value=7.5e-06 Score=86.91 Aligned_cols=183 Identities=15% Similarity=0.177 Sum_probs=105.1
Q ss_pred CcCcc-ccH--HHHHHHHHHhcCCC-ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHH
Q 007268 153 YEAFE-SRA--SILNEIMDALKNPN-VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIAD 228 (610)
Q Consensus 153 ~~~~v-GR~--~~~~~L~~~L~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (610)
...|+ |.. .....+......++ ...+.|+|++|+||||||+.+++.......-..+++++... +...+..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHH
Confidence 34566 533 33344444444433 67899999999999999999998875431122455665432 3334443
Q ss_pred hhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc----chhhcCCCCC-CCCCeEEEEEecccccc-----ccc
Q 007268 229 KLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD----LLDVGIPHGD-DHKGCKVLFTARSEEVL-----SGE 298 (610)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~----~~~l~~~l~~-~~~gs~IivTTR~~~va-----~~~ 298 (610)
.+... ....+...+. .++-+|+|||++.... .+.+...+.. ...|..||+||...... ...
T Consensus 178 ~~~~~--------~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 178 SMKEG--------KLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHHTT--------CHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHHcc--------cHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 33211 1122333332 2567999999965421 1222111110 13456788888764321 000
Q ss_pred ---CCccceecCCCCCHHHHHHHHHHHhC--CCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 299 ---MESRKNFPVGFLKEEEAWSLFKKMAG--DYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 299 ---~~~~~~~~l~~L~~~ea~~Lf~~~~~--~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
......+.+++++.++-.+++.+.+. +..-++ +....|++.++|.+-.+.-+
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHH
Confidence 11235789999999999999988873 111122 34667888999988655444
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.14 E-value=4.2e-05 Score=76.80 Aligned_cols=177 Identities=12% Similarity=0.184 Sum_probs=101.8
Q ss_pred CCCcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 151 KDYEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
.....++|.+..++.|.+++. -...+.+.|+|++|+|||+||+.+++.... ..+.++
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~----- 81 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIK----- 81 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEEC-----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEE-----
Confidence 345678899988888776653 134568999999999999999999987642 223332
Q ss_pred ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc----------------chhhcCCCC--CC
Q 007268 218 DVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD----------------LLDVGIPHG--DD 279 (610)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~----------------~~~l~~~l~--~~ 279 (610)
..++..... +.. ...+..+........+.+|+||+++.... ...+...+. ..
T Consensus 82 -~~~l~~~~~---g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 82 -GPELLTMWF---GES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp -HHHHHHHHH---TTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred -hHHHHhhhc---Cch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 223332221 211 12233444444435689999999974210 111111110 12
Q ss_pred CCCeEEEEEecccccc-cccC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHH
Q 007268 280 HKGCKVLFTARSEEVL-SGEM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVS 349 (610)
Q Consensus 280 ~~gs~IivTTR~~~va-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 349 (610)
..+..||.||...... .... .-...+.+...+.++-.+++...+......... ....++..+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 3356777777665322 1111 123578999999999999998887532211111 123566667777654
No 47
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=6.4e-05 Score=77.58 Aligned_cols=177 Identities=16% Similarity=0.224 Sum_probs=105.8
Q ss_pred CCCCCcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 149 PNKDYEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 149 ~~~~~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
|.....++.|-++.+++|.+.+. -..++=|.++|++|+|||.||+.+++..... .+.++.+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~ 217 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAE 217 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHH
Confidence 34445677788888877766543 1345678999999999999999999987642 34444443
Q ss_pred CCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc----------c------chhhcCCCC--
Q 007268 216 SRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL----------D------LLDVGIPHG-- 277 (610)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~----------~------~~~l~~~l~-- 277 (610)
-.+. .. ......+..+........+++|++|+++... . ...+...+.
T Consensus 218 l~sk--------------~v-Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 218 LVQK--------------YI-GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp GSCS--------------ST-THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred hhcc--------------cc-chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 2210 00 0112234444444444679999999997431 0 111111111
Q ss_pred CCCCCeEEEEEecccccccc-c---CCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 278 DDHKGCKVLFTARSEEVLSG-E---MESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 278 ~~~~gs~IivTTR~~~va~~-~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
....+..||.||........ . ..-...+.++..+.++-.++|+.++......++. ....|++.+.|.-
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI--NLRKVAEKMNGCS 354 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC--CHHHHHHHCCSCC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHCCCCC
Confidence 22345567777776654311 1 1234688999999999999998887543222211 1346778888754
No 48
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.11 E-value=1e-05 Score=93.25 Aligned_cols=158 Identities=12% Similarity=0.175 Sum_probs=90.1
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCC-----CCeEEEEEeCCCCChHHHHHH
Q 007268 151 KDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKL-----FDQVVLSEVSESRDVRKIQGE 225 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----f~~~~wv~vs~~~~~~~~~~~ 225 (610)
....+++||++++..+++.|.....+.+.|+|++|+|||++|+.+++....... -..+++++++.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 345679999999999999998766667899999999999999999988643211 12344444432110
Q ss_pred HHHhhCCCCCCCChhHHHHHHHHHHhC-CCeEEEEEeCCCCccc-------chh---hcCCCCCCCCCeEEEEEeccccc
Q 007268 226 IADKLGLKFDVESESGRARILYDRLKK-EERILVILDNIWENLD-------LLD---VGIPHGDDHKGCKVLFTARSEEV 294 (610)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~L~~-~kr~LLVLDdv~~~~~-------~~~---l~~~l~~~~~gs~IivTTR~~~v 294 (610)
+... .......+..+...+.. +++.+|++|+++.... ++. +...+ . ..+..+|.+|.....
T Consensus 240 -----g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~-~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 -----GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-A-RGELRLIGATTLDEY 311 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-H-TTCCCEEEEECHHHH
T ss_pred -----cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-h-CCCeEEEEecCchHH
Confidence 0000 01122334445555543 3689999999975420 111 11111 1 123445655543321
Q ss_pred -----ccccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 295 -----LSGEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 295 -----a~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
..........+.+++++.++..+++....
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 12122333468999999999999997554
No 49
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=9.5e-05 Score=77.47 Aligned_cols=176 Identities=17% Similarity=0.253 Sum_probs=103.3
Q ss_pred CCCCcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 150 NKDYEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
.....++.|-++.+++|.+.+. -..++=|.++|++|+|||+||+.+++..... .+.++.+.-
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l 251 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGI 251 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGT
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhh
Confidence 3345667788888777766543 1345789999999999999999999987632 344544432
Q ss_pred CChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--------c--------chhhcCCC--CC
Q 007268 217 RDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--------D--------LLDVGIPH--GD 278 (610)
Q Consensus 217 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--------~--------~~~l~~~l--~~ 278 (610)
.+. .. ......+..+........+++|++|+++... . +..+...+ ..
T Consensus 252 ~sk--------------~~-Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 252 VDK--------------YI-GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp CCS--------------SS-SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred ccc--------------cc-hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 210 00 0111233344444444679999999997431 0 11111111 11
Q ss_pred CCCCeEEEEEeccccccc-ccCC---ccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 279 DHKGCKVLFTARSEEVLS-GEME---SRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 279 ~~~gs~IivTTR~~~va~-~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
...+..||.||....... .... -...+.++..+.++-.++|..++......++. ....|++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~--dl~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF--DFEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC--CHHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhCCCCC
Confidence 233556777887655432 1222 24578898889999999998877432221111 1346777887754
No 50
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.06 E-value=1.4e-05 Score=81.26 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=97.6
Q ss_pred CcCcc-c--cHHHHHHHHHHhcCC--CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHH
Q 007268 153 YEAFE-S--RASILNEIMDALKNP--NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 153 ~~~~v-G--R~~~~~~L~~~L~~~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
...|+ | .......+..++..+ ....+.|+|++|+||||||+.+++..... -..+++++.. .+...+.
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~~ 81 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMV 81 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHHH
Confidence 34554 4 233344455555443 34679999999999999999999887543 1234555543 2333333
Q ss_pred HhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc---c-hhhcCCCCC-CCCCeEEEEEecccccc-----cc
Q 007268 228 DKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD---L-LDVGIPHGD-DHKGCKVLFTARSEEVL-----SG 297 (610)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~---~-~~l~~~l~~-~~~gs~IivTTR~~~va-----~~ 297 (610)
..+... ........+. ++.+|+||+++.... + ..+...+.. ...+..||+||...... ..
T Consensus 82 ~~~~~~--------~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~ 151 (324)
T 1l8q_A 82 EHLKKG--------TINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDR 151 (324)
T ss_dssp HHHHHT--------CHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHH
T ss_pred HHHHcC--------cHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhH
Confidence 332110 1122233333 367999999975431 1 122111100 12345688887654221 00
Q ss_pred c---CCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHH
Q 007268 298 E---MESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSI 350 (610)
Q Consensus 298 ~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 350 (610)
. ......+.+.+ +.++..+++...+...... -..+....|++.+ |.+-.+
T Consensus 152 L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~-l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 152 LVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE-LRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHC-SSHHHH
T ss_pred hhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHhC-CCHHHH
Confidence 0 11225689999 9999999999887421111 1135567788888 776543
No 51
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00015 Score=75.80 Aligned_cols=175 Identities=15% Similarity=0.201 Sum_probs=103.7
Q ss_pred CCCcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 151 KDYEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
....++.|-++.+++|.+.+. -..++-|.++|++|+|||.||+.+++.... ..+.++.+.-.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~-----~fi~vs~s~L~ 280 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA-----TFIRVIGSELV 280 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGGC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC-----CeEEEEhHHhh
Confidence 344567888888888776542 235678999999999999999999998764 23444443221
Q ss_pred ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc----------------chhhcCCC--CCC
Q 007268 218 DVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD----------------LLDVGIPH--GDD 279 (610)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~----------------~~~l~~~l--~~~ 279 (610)
+ ... ......+..+........+++|++|+++.... ...+...+ ...
T Consensus 281 s--------------k~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 281 Q--------------KYV-GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp C--------------CSS-SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred c--------------ccC-CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 1 000 01122334444444446799999999974310 00111111 112
Q ss_pred CCCeEEEEEeccccccc-cc---CCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 280 HKGCKVLFTARSEEVLS-GE---MESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 280 ~~gs~IivTTR~~~va~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
..+..||.||....... .. ..-...+.+...+.++-.++|+.++.......+. ....|++.|.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI--RWELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHCCCCC
Confidence 33556677776654431 11 1234678999999999999999887643222211 1346778888753
No 52
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=4.8e-05 Score=79.69 Aligned_cols=177 Identities=14% Similarity=0.201 Sum_probs=102.4
Q ss_pred CCCCCcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 149 PNKDYEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 149 ~~~~~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
|.....++.|-++.+++|.+.+. -..++-|.++|++|+|||.||+.+++.... ..+.++.+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~-----~f~~v~~s~ 250 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA-----TFLKLAAPQ 250 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----EEEEEEGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC-----CEEEEehhh
Confidence 44456778898888888876543 234678999999999999999999998754 234444433
Q ss_pred CCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc-------cc---------chhhcCCCC--
Q 007268 216 SRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN-------LD---------LLDVGIPHG-- 277 (610)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~-------~~---------~~~l~~~l~-- 277 (610)
-.+ ... ......+..+........+++|++|+++.. .. ...+...+.
T Consensus 251 l~~--------------~~v-Gese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 251 LVQ--------------MYI-GEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp GCS--------------SCS-SHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred hhh--------------ccc-chHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 211 000 011123334444333347899999998632 00 011111111
Q ss_pred CCCCCeEEEEEecccccccc-cC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 278 DDHKGCKVLFTARSEEVLSG-EM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 278 ~~~~gs~IivTTR~~~va~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
....+..||.||........ .. .-...+.++..+.++-.++|..++......++. ....|++.+.|.-
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv--dl~~lA~~t~G~s 387 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI--NWQELARSTDEFN 387 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC--CHHHHHHHCSSCC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCC
Confidence 12234556667776654321 11 223578899889999899998776422211111 1346777887753
No 53
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.03 E-value=7.9e-05 Score=84.85 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=95.0
Q ss_pred CCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCC----CCeEEE-EEeCCCCChHHHHHHH
Q 007268 152 DYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKL----FDQVVL-SEVSESRDVRKIQGEI 226 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----f~~~~w-v~vs~~~~~~~~~~~i 226 (610)
....++||+.++.++.+.|......-+.|+|++|+|||++|+.+++....... ....+| ++.+.-.
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~--------- 254 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL--------- 254 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh---------
Confidence 34678999999999999998767778899999999999999999987643211 133332 2221110
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--------c--chhhcCCCCCCCCCeEEEEEecccccc-
Q 007268 227 ADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--------D--LLDVGIPHGDDHKGCKVLFTARSEEVL- 295 (610)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--------~--~~~l~~~l~~~~~gs~IivTTR~~~va- 295 (610)
............+..+.+.+...++.+|++|+++... . ...+..++... .+..+|.+|......
T Consensus 255 ----~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~~~~~~ 329 (758)
T 1r6b_X 255 ----AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSN 329 (758)
T ss_dssp ----CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHHHHHC
T ss_pred ----ccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCchHHhh
Confidence 0000111223344555555555567999999997541 1 11222233222 344566666543211
Q ss_pred -----cccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 296 -----SGEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 296 -----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
.........+.+.+.+.++..+++....
T Consensus 330 ~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1111223468999999999999887654
No 54
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=0.00019 Score=74.43 Aligned_cols=177 Identities=18% Similarity=0.202 Sum_probs=103.6
Q ss_pred CCCCCcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 149 PNKDYEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 149 ~~~~~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
|.....++.|-++.+++|.+.+. -..++=|.++|++|+|||.||+.+++..... .+.++.+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~ 251 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSE 251 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGG
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHH
Confidence 34455677788888877766543 1345789999999999999999999987642 33344332
Q ss_pred CCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc----------------chhhcCCC--C
Q 007268 216 SRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD----------------LLDVGIPH--G 277 (610)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~----------------~~~l~~~l--~ 277 (610)
-.+ ... ......+..+........+++|++|+++.... ...+...+ .
T Consensus 252 l~s--------------k~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 252 LIQ--------------KYL-GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp GCC--------------SSS-SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred hhh--------------ccC-chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 211 000 11122344444444446789999999874310 01111111 0
Q ss_pred CCCCCeEEEEEeccccccc-ccCC---ccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 278 DDHKGCKVLFTARSEEVLS-GEME---SRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 278 ~~~~gs~IivTTR~~~va~-~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
....+..||.||....... .... -...+.++.-+.++-.++|..++......++. ....|++.+.|.-
T Consensus 317 ~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~GfS 388 (437)
T 4b4t_I 317 DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDLS 388 (437)
T ss_dssp CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSCC
T ss_pred CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCC
Confidence 2234556777887665432 1222 23468888889999999998887543222211 1346777887753
No 55
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.99 E-value=7.6e-05 Score=72.98 Aligned_cols=181 Identities=17% Similarity=0.204 Sum_probs=98.0
Q ss_pred CCCcCccccHHHHHHHHHHh---cC---------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 151 KDYEAFESRASILNEIMDAL---KN---------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L---~~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
.....++|.+..++++.+.+ .. ...+-+.|+|++|+||||||+.+++..... .+.++.+.-..
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHHHHH
Confidence 34567889888777665443 21 123468899999999999999999876421 23343322111
Q ss_pred hHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc----------------cchhhcCCCC--CCC
Q 007268 219 VRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL----------------DLLDVGIPHG--DDH 280 (610)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~----------------~~~~l~~~l~--~~~ 280 (610)
. ... .....+..+.+......+.++++|+++... ....+...+. ...
T Consensus 84 ~--------------~~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 M--------------FVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp S--------------CCC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred H--------------hhh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0 001 112233444444444567899999984211 0011111110 123
Q ss_pred CCeEEEEEecccccc-cccC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCC-chHHHHHH
Q 007268 281 KGCKVLFTARSEEVL-SGEM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAG-LPVSIVTV 353 (610)
Q Consensus 281 ~gs~IivTTR~~~va-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~i 353 (610)
.+..||.||...... .... .-...+.+...+.++-.+++...+......++ .....++..+.| .+--|..+
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~--~~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD--IDAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHcCCCCHHHHHHH
Confidence 345677777665422 1111 12346788888888888888877643221111 112356677777 66544433
No 56
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=2.3e-05 Score=78.74 Aligned_cols=146 Identities=15% Similarity=0.051 Sum_probs=88.9
Q ss_pred ccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccC--CCCCeEEEEEeCC-CCChHHHHHHHHHhhCCCC
Q 007268 158 SRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESD--KLFDQVVLSEVSE-SRDVRKIQGEIADKLGLKF 234 (610)
Q Consensus 158 GR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 234 (610)
|-++.++.|...+..++.+...++|++|+|||++|+.+++..... .+. ...++..+. ...+.+ .+++.+.+...+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~-d~~~l~~~~~~~~id~-ir~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKAS-DVLEIDPEGENIGIDD-IRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTT-TEEEECCSSSCBCHHH-HHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCC-CEEEEcCCcCCCCHHH-HHHHHHHHhhcc
Confidence 344566777777776667899999999999999999998753211 123 345555443 233332 233444433221
Q ss_pred CCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEeccc-ccccccCCccceecCCCCC
Q 007268 235 DVESESGRARILYDRLKKEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARSE-EVLSGEMESRKNFPVGFLK 311 (610)
Q Consensus 235 ~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~va~~~~~~~~~~~l~~L~ 311 (610)
. .+++-++|+|+++.. ...+.+...+-...+.+.+|++|.+. .+.... ... .+++.+++
T Consensus 79 ~----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI-~SR-~~~f~~l~ 140 (305)
T 2gno_A 79 E----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTI-KSR-VFRVVVNV 140 (305)
T ss_dssp S----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHH-HTT-SEEEECCC
T ss_pred c----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHH-Hce-eEeCCCCC
Confidence 1 145679999999754 23344433332333466777766544 333222 223 89999999
Q ss_pred HHHHHHHHHHHh
Q 007268 312 EEEAWSLFKKMA 323 (610)
Q Consensus 312 ~~ea~~Lf~~~~ 323 (610)
.++..+.+.+.+
T Consensus 141 ~~~i~~~L~~~~ 152 (305)
T 2gno_A 141 PKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 57
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.95 E-value=3.4e-06 Score=75.03 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=35.5
Q ss_pred CccccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 155 AFESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.++|+...+.++.+.+. .....-|.|+|.+|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 47899888888887764 23334578999999999999999988653
No 58
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.92 E-value=3.7e-05 Score=87.52 Aligned_cols=151 Identities=14% Similarity=0.202 Sum_probs=88.2
Q ss_pred CCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCC-CC---Ce-EEEEEeCCCCChHHHHHHH
Q 007268 152 DYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDK-LF---DQ-VVLSEVSESRDVRKIQGEI 226 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~f---~~-~~wv~vs~~~~~~~~~~~i 226 (610)
....++||+++++.+...|......-+.|+|++|+|||++|+.+++...... .+ ++ .+.++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 3467999999999999999876667789999999999999999998863321 11 11 122222
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEeccccc------ccccCC
Q 007268 227 ADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEV------LSGEME 300 (610)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v------a~~~~~ 300 (610)
+....+ .....+..+.......++.+|++|. .......+...+. ....++|.||..... ......
T Consensus 245 ----g~~~~G-~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 245 ----GTKYRG-EFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred ----cccccc-hHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 101000 0112234444555545788999992 2222222322222 224566666655441 111112
Q ss_pred ccceecCCCCCHHHHHHHHHHHhC
Q 007268 301 SRKNFPVGFLKEEEAWSLFKKMAG 324 (610)
Q Consensus 301 ~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (610)
....+.+++.+.++..+++.....
T Consensus 316 Rf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHH
Confidence 235799999999999999997654
No 59
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00028 Score=73.82 Aligned_cols=176 Identities=17% Similarity=0.234 Sum_probs=97.8
Q ss_pred CCCCcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 150 NKDYEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
.....++.|-++.+++|.+.+. -..++=|.++|++|+|||+||+.+++.... ..+.++.+.-
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~-----~~~~v~~~~l 242 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA-----AFIRVNGSEF 242 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC-----EEEEEEGGGT
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEecchh
Confidence 3445677888888887766553 134567999999999999999999998753 2344554432
Q ss_pred CChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--------c--------chhhcCCCC--C
Q 007268 217 RDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--------D--------LLDVGIPHG--D 278 (610)
Q Consensus 217 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--------~--------~~~l~~~l~--~ 278 (610)
.+. . .......+..+........+++|++|+++... . ...+...+. .
T Consensus 243 ~~~--------------~-~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 243 VHK--------------Y-LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp CCS--------------S-CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred hcc--------------c-cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 210 0 01112234444444444578999999986220 0 111111110 1
Q ss_pred CCCCeEEEEEeccccccc-ccC---CccceecCCCC-CHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 279 DHKGCKVLFTARSEEVLS-GEM---ESRKNFPVGFL-KEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 279 ~~~gs~IivTTR~~~va~-~~~---~~~~~~~l~~L-~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
...+..||.||....... ... .-...+.+.++ +.++-..+|..++......++. ....|++.+.|.-
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~--dl~~lA~~t~G~s 379 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA--DLDSLIIRNDSLS 379 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC--CHHHHHHHTTTCC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHHCCCCC
Confidence 234556777887655331 111 12346778655 5555566776666432211111 1346777777753
No 60
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.83 E-value=1.6e-05 Score=73.25 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHhcC---CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC
Q 007268 159 RASILNEIMDALKN---PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFD 235 (610)
Q Consensus 159 R~~~~~~L~~~L~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 235 (610)
+...++.+.+++.+ +....+.|+|++|+||||||+.+++.......+ .+++++ ..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCchH
Confidence 44555555555542 345789999999999999999999887522112 223333 34444444433321111
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEeCCCC--cccchh--hcCCCCC-CCCCeEEEEEeccc
Q 007268 236 VESESGRARILYDRLKKEERILVILDNIWE--NLDLLD--VGIPHGD-DHKGCKVLFTARSE 292 (610)
Q Consensus 236 ~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~--~~~~~~--l~~~l~~-~~~gs~IivTTR~~ 292 (610)
. .+.+.+. ++-+||||+++. ...|.. +...+.. ...|..+|+||...
T Consensus 92 ----~----~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 ----T----KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ----S----HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ----H----HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 0 2333343 467999999973 233321 1111100 12456788888754
No 61
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.75 E-value=0.00034 Score=74.90 Aligned_cols=179 Identities=15% Similarity=0.205 Sum_probs=101.7
Q ss_pred CcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh
Q 007268 153 YEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV 219 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~ 219 (610)
...++|.+..+++|.+++. ....+-|.|+|++|+|||++|+.+++.... ..+.++++.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~~---- 273 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE---- 273 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHHH----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEchH----
Confidence 4568999999998877764 234567999999999999999999887531 234444321
Q ss_pred HHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc-------------cchhhcCCCC--CCCCCeE
Q 007268 220 RKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL-------------DLLDVGIPHG--DDHKGCK 284 (610)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~-------------~~~~l~~~l~--~~~~gs~ 284 (610)
+...+ . .........+......+++.+|+||+++... ....+...+. ....+..
T Consensus 274 ------l~~~~----~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 274 ------IMSKL----A-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp ------HHTSC----T-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred ------hhhhh----c-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 11110 0 0111223333444444678999999984211 0111111110 1233556
Q ss_pred EEEEecccccc-cccC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCc-hHHHHHH
Q 007268 285 VLFTARSEEVL-SGEM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGL-PVSIVTV 353 (610)
Q Consensus 285 IivTTR~~~va-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~i 353 (610)
||.||...... .... .-...+.+...+.++-.++|..++........ .....+++.+.|. +-.|..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHHH
Confidence 66677655322 1111 22346899999999999999988753322111 1124566777764 5444444
No 62
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.74 E-value=0.00045 Score=73.46 Aligned_cols=200 Identities=17% Similarity=0.241 Sum_probs=109.4
Q ss_pred CCcCccccHHHHHHHHHHhc---CC---------CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh
Q 007268 152 DYEAFESRASILNEIMDALK---NP---------NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV 219 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~---~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~ 219 (610)
....++|.++.++++.+... .+ .++-|.|+|++|+|||+||+.++...... .+.++.+.-...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH
Confidence 34578898887766655432 21 23458899999999999999999876432 234444332211
Q ss_pred HHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc----------------cchhhcCCCC--CCCC
Q 007268 220 RKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL----------------DLLDVGIPHG--DDHK 281 (610)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~----------------~~~~l~~~l~--~~~~ 281 (610)
... .....+..+........+.+|+||+++... ....+...+. ....
T Consensus 89 --------------~~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 --------------FVG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp --------------CTT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred --------------Hhc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 000 011223334444444578999999996421 1112211110 1123
Q ss_pred CeEEEEEeccccccc-ccCC---ccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchH-HHHHH---
Q 007268 282 GCKVLFTARSEEVLS-GEME---SRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPV-SIVTV--- 353 (610)
Q Consensus 282 gs~IivTTR~~~va~-~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~i--- 353 (610)
+..||.||....... .... -...+.+...+.++-.+++..++......++. ....|++.+.|..- -|..+
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~sgadL~~lv~~ 231 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFVGADLENLVNE 231 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCcHHHHHHHHHH
Confidence 566777777654331 1111 23478888888888888888777533221111 13457788888762 23222
Q ss_pred HHHHh---cC---CHHHHHHHHHHhc
Q 007268 354 ARALR---NK---GIREWKDALEQLR 373 (610)
Q Consensus 354 ~~~L~---~~---~~~~w~~~l~~l~ 373 (610)
+..+. +. +...+...++...
T Consensus 232 Aal~A~~~~~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 232 AALLAAREGRDKITMKDFEEAIDRVI 257 (476)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCeecHHHHHHHHHHHh
Confidence 11111 11 5666777666653
No 63
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.72 E-value=5.6e-05 Score=76.07 Aligned_cols=105 Identities=16% Similarity=0.276 Sum_probs=61.3
Q ss_pred CccccHHHHHHHHHHhcCC---------CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHH
Q 007268 155 AFESRASILNEIMDALKNP---------NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGE 225 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (610)
.++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..... -...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeecccccccc-cHHH
Confidence 4678888888877766521 13589999999999999999999886432 1235566665433221 1122
Q ss_pred HHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc
Q 007268 226 IADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN 266 (610)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~ 266 (610)
+ ++......... ....+...+......+|+||+++..
T Consensus 95 l---~g~~~~~~~~~-~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 95 L---IGAPPGYVGYE-EGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp H---HCCCTTSTTTT-TCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred h---cCCCCcccccc-ccchHHHHHHhCCCeEEEEeChhhc
Confidence 2 22221111100 0012333443344579999999754
No 64
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.72 E-value=3.9e-05 Score=72.01 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCC----CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCC
Q 007268 161 SILNEIMDALKNP----NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDV 236 (610)
Q Consensus 161 ~~~~~L~~~L~~~----~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 236 (610)
..++.+.+++... ..+.+.|+|++|+|||+||+.+++..... ...++|++++ ++...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~---- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD---- 103 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc----
Confidence 3455566665522 12789999999999999999999887643 3356666543 344444433221
Q ss_pred CChhHHHHHHHHHHhCCCeEEEEEeCCCCc--ccchh--hcC-CCCCC-CCCeEEEEEeccc
Q 007268 237 ESESGRARILYDRLKKEERILVILDNIWEN--LDLLD--VGI-PHGDD-HKGCKVLFTARSE 292 (610)
Q Consensus 237 ~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~--~~~~~--l~~-~l~~~-~~gs~IivTTR~~ 292 (610)
... ..+...+.+ .-+|||||++.. ..|.. +.. .+... ..+.++|+||...
T Consensus 104 ~~~----~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 QTM----NEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp CCC----HHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred chH----HHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 111 223333432 239999999643 33322 111 11111 2345688888754
No 65
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.70 E-value=2.7e-05 Score=76.71 Aligned_cols=152 Identities=20% Similarity=0.210 Sum_probs=80.6
Q ss_pred CcCccccHHHHHHHHHHhc---C---------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChH
Q 007268 153 YEAFESRASILNEIMDALK---N---------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVR 220 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~---~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 220 (610)
...++|.+..++.|.+.+. . ...+-+.|+|++|+|||+||+.+++..... | +.+..+.-.+.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~---~~v~~~~~~~~- 83 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP--F---FSMGGSSFIEM- 83 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC--C---CCCCSCTTTTS-
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEechHHHHHh-
Confidence 4567887776666655443 1 223447899999999999999999876532 2 11111111000
Q ss_pred HHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc-----------------cchhhcCCCCC---CC
Q 007268 221 KIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL-----------------DLLDVGIPHGD---DH 280 (610)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~-----------------~~~~l~~~l~~---~~ 280 (610)
..+.. ... ...+.......++.+|+||+++... ....+...+.. ..
T Consensus 84 --------~~~~~--~~~----~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 84 --------FVGLG--ASR----VRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp --------CSSSC--SSS----SSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred --------hcchH--HHH----HHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 00100 001 1112222222357899999996431 12222222211 11
Q ss_pred CCeEEEEEeccccccc-ccC---CccceecCCCCCHHHHHHHHHHHhC
Q 007268 281 KGCKVLFTARSEEVLS-GEM---ESRKNFPVGFLKEEEAWSLFKKMAG 324 (610)
Q Consensus 281 ~gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (610)
....||.||....... ... .-...+.+.+.+.++-.+++...+.
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 2345666776554221 111 1234688888888888888887764
No 66
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.66 E-value=0.00016 Score=72.45 Aligned_cols=47 Identities=28% Similarity=0.432 Sum_probs=37.9
Q ss_pred cCccccHHHHHHHHHHhcC--------------CCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 154 EAFESRASILNEIMDALKN--------------PNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~--------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..++|++..++.+...+.. .....+.|+|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999988888776642 2356788999999999999999998773
No 67
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.65 E-value=0.0018 Score=65.79 Aligned_cols=194 Identities=16% Similarity=0.158 Sum_probs=103.2
Q ss_pred CCCcCccccHHHHHHHHHHhcC-----CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHH
Q 007268 151 KDYEAFESRASILNEIMDALKN-----PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGE 225 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~-----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (610)
.....++|.+..++.+...+.. .....+.|+|++|+||||||+.++...... | ...+.+-.....+
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~---~~~sg~~~~~~~~---- 92 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--I---HVTSGPVLVKQGD---- 92 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--E---EEEETTTCCSHHH----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEechHhcCHHH----
Confidence 3456788988887777665542 234679999999999999999999987432 1 1111111111111
Q ss_pred HHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCCCCC--------CC----------CCeEE
Q 007268 226 IADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIPHGD--------DH----------KGCKV 285 (610)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~l~~--------~~----------~gs~I 285 (610)
+..+...+ .++.++++|++.... ..+.+...+.. .+ +...+
T Consensus 93 -----------------l~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 93 -----------------MAAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp -----------------HHHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred -----------------HHHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 11111111 234577788875431 11111100000 00 11122
Q ss_pred E-EEecccccccccC-CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCchHHHHHHHHHH------
Q 007268 286 L-FTARSEEVLSGEM-ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLPVSIVTVARAL------ 357 (610)
Q Consensus 286 i-vTTR~~~va~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i~~~L------ 357 (610)
+ .|++...+..... .....+.+++.+.++-.+++.+.+..... .-..+.+..|++.+.|.|-.+..+...+
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTV 232 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2 3444333211111 11235889999999999999987642111 1223668889999999997554443322
Q ss_pred hc--C-CHHHHHHHHHHhc
Q 007268 358 RN--K-GIREWKDALEQLR 373 (610)
Q Consensus 358 ~~--~-~~~~w~~~l~~l~ 373 (610)
.+ . +.+....+++.+.
T Consensus 233 ~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 233 VKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HTCSSBCHHHHHHHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHhC
Confidence 11 1 5555666666653
No 68
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.61 E-value=0.00038 Score=74.17 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=37.2
Q ss_pred CcCccccHHHHHHHHHHh---cCC--CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 153 YEAFESRASILNEIMDAL---KNP--NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L---~~~--~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...++|.++.++.+..++ ..+ ..+-+.++|++|+|||+||+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 467899998877654443 332 336789999999999999999998875
No 69
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.49 E-value=1.8e-05 Score=70.03 Aligned_cols=46 Identities=11% Similarity=0.147 Sum_probs=32.6
Q ss_pred cCccccHHHHHHHHHHhcC--CCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 154 EAFESRASILNEIMDALKN--PNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..++|++..+.++.+.+.. ....-|.|+|.+|+|||++|+.+.+..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3578888888887777651 233457899999999999999887653
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.34 E-value=0.005 Score=59.71 Aligned_cols=176 Identities=16% Similarity=0.204 Sum_probs=90.2
Q ss_pred CCCCcCccccHHHHHHHHHH---hcC---------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 150 NKDYEAFESRASILNEIMDA---LKN---------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~---L~~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
......++|.++.+.++.+. +.. .-.+-+.|+|++|+||||||+.++..... ..+.++..
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~--- 83 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS--- 83 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH---
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHH---
Confidence 33456678877665555433 211 11223899999999999999999987642 23333321
Q ss_pred ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc------------c----chhhcCCCCCC--
Q 007268 218 DVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL------------D----LLDVGIPHGDD-- 279 (610)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~------------~----~~~l~~~l~~~-- 279 (610)
. +.... .......+..+.+......+.++++|+++... . ...+...+..+
T Consensus 84 ---~----~~~~~-----~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 ---D----FVEMF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp ---H----HHHSC-----TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred ---H----HHHHH-----hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 1 11100 00011223334444433357899999984221 0 11121111111
Q ss_pred CCCeEEEEEecccccccc-cC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 280 HKGCKVLFTARSEEVLSG-EM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 280 ~~gs~IivTTR~~~va~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
....-++.||........ .. .-...+.+...+.++-.+++...+......++ .....|++.+.|.-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcc--cCHHHHHHHcCCCC
Confidence 122344456665544311 11 22347888989998888888877643221111 11235666776653
No 71
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.27 E-value=0.0013 Score=65.46 Aligned_cols=27 Identities=33% Similarity=0.304 Sum_probs=24.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.++.+.|+|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456888999999999999999999875
No 72
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.25 E-value=0.0013 Score=71.50 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=77.3
Q ss_pred CccccHHHHHHHHHHhc------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHH
Q 007268 155 AFESRASILNEIMDALK------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIAD 228 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (610)
.++|-++....+.+.+. ......+.|+|++|+||||||+.++...... ...+.++...+...+......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-----~~~i~~~~~~~~~~~~g~~~~ 156 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK-----FVRISLGGVRDESEIRGHRRT 156 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE-----EEEECCCC-------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-----eEEEEecccchhhhhhhHHHH
Confidence 46777776666544332 2345689999999999999999999887421 223333332222211111111
Q ss_pred hhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc------chhhcCCCCC--------C-------CCCeEEEE
Q 007268 229 KLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD------LLDVGIPHGD--------D-------HKGCKVLF 287 (610)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~------~~~l~~~l~~--------~-------~~gs~Iiv 287 (610)
..+.. ............. ..-+|+||+++.... ...+...+.. . .....||.
T Consensus 157 ~ig~~------~~~~~~~~~~a~~-~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ 229 (543)
T 3m6a_A 157 YVGAM------PGRIIQGMKKAGK-LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIA 229 (543)
T ss_dssp -------------CHHHHHHTTCS-SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEE
T ss_pred HhccC------chHHHHHHHHhhc-cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEe
Confidence 11110 0011111111111 334888999875421 1222111110 0 03345666
Q ss_pred Eecccccc-cccCCccceecCCCCCHHHHHHHHHHHh
Q 007268 288 TARSEEVL-SGEMESRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 288 TTR~~~va-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
||...... .........+.+.+++.++-.+++..++
T Consensus 230 ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 230 TANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp ECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred ccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 66654322 1112223578999999999888887764
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.24 E-value=0.00022 Score=81.15 Aligned_cols=149 Identities=15% Similarity=0.192 Sum_probs=82.3
Q ss_pred cCccccHHHHHHHHHHhcC---------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHH
Q 007268 154 EAFESRASILNEIMDALKN---------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQG 224 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (610)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..... -...+.++++........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~~-- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHST-- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccccc--
Confidence 4578999988888777651 112379999999999999999999886432 234556666543211000
Q ss_pred HHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--cchhhcCC-----CCC------CCCCeEEEEEecc
Q 007268 225 EIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--DLLDVGIP-----HGD------DHKGCKVLFTARS 291 (610)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--~~~~l~~~-----l~~------~~~gs~IivTTR~ 291 (610)
. ...+...+......+|+||+++... ....+... +.. ...+.+||+||..
T Consensus 567 -------------~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 567 -------------S----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -------------C-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -------------c----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 0111122222344589999997542 12221110 100 1235678888873
Q ss_pred ccc-------------ccccCC-ccceecCCCCCHHHHHHHHHHHh
Q 007268 292 EEV-------------LSGEME-SRKNFPVGFLKEEEAWSLFKKMA 323 (610)
Q Consensus 292 ~~v-------------a~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~ 323 (610)
..- ...... -..++.+.+|+.++..+++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 210 000011 12478888998888877776653
No 74
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.23 E-value=0.0026 Score=62.74 Aligned_cols=176 Identities=15% Similarity=0.177 Sum_probs=91.9
Q ss_pred CCCCcCccccHHHHHHHHHHhc---C---------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 150 NKDYEAFESRASILNEIMDALK---N---------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~---~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
......++|.++.+.++.+... . .-.+-+.|+|++|+||||||+.++..... ..+.+...
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~--- 107 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS--- 107 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH---
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHH---
Confidence 3445678888877665544332 1 01123899999999999999999987642 23333321
Q ss_pred ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc------------c----chhhcCCCCCC--
Q 007268 218 DVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL------------D----LLDVGIPHGDD-- 279 (610)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~------------~----~~~l~~~l~~~-- 279 (610)
. +..... ......+..+.+......+.++++|+++... . ...+...+..+
T Consensus 108 ---~----~~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 ---D----FVEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp ---H----HHHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred ---H----HHHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 1 111000 0011223334444433457899999985210 0 11121111111
Q ss_pred CCCeEEEEEeccccccccc----CCccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 280 HKGCKVLFTARSEEVLSGE----MESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 280 ~~gs~IivTTR~~~va~~~----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
.....++.||......... ..-...+.+...+.++-.+++...+......++ .....++..+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc--cCHHHHHHHcCCCC
Confidence 1223444566655443111 122357888988999888888877643221111 11335667777754
No 75
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.21 E-value=0.00086 Score=75.49 Aligned_cols=173 Identities=14% Similarity=0.216 Sum_probs=96.7
Q ss_pred CcCccccHHHHHHHHHHhc----C---------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh
Q 007268 153 YEAFESRASILNEIMDALK----N---------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV 219 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~----~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~ 219 (610)
..++.|-++.+++|.+.+. . ..++-|.++|++|+|||+||+.+++.... ..+.++.+.
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-----~~~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-----EEEEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----eEEEEEhHH----
Confidence 3445666666655555432 1 24578999999999999999999987643 234444321
Q ss_pred HHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--------c-----chhhcCCCC--CCCCCeE
Q 007268 220 RKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--------D-----LLDVGIPHG--DDHKGCK 284 (610)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--------~-----~~~l~~~l~--~~~~gs~ 284 (610)
+... . .......+..+.+......+++|+||+++... . ...+...+. ....+..
T Consensus 274 ------l~sk----~-~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 ------IMSK----L-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ------HHSS----C-TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ------hhcc----c-chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 1110 0 01112234444555555678999999986431 0 011111110 1123445
Q ss_pred EEEEeccccccc-ccC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 285 VLFTARSEEVLS-GEM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 285 IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
||.||....... ... .-...+.+...+.++-.++|..+........+ .....|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d--vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT--CCHHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc--cCHHHHHHhcCCCC
Confidence 666666544321 111 22457899999999999999887753222111 11346788888764
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.19 E-value=0.0064 Score=59.83 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=82.9
Q ss_pred CCcCccccHHHHHHHHHHhc--------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 152 DYEAFESRASILNEIMDALK--------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~--------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
...++.|-++.+++|.+.+. ..... +.|+|++|+||||||+.++..... ..+++....-.
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~ 81 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELL 81 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHH
Confidence 34566777777777665432 11223 999999999999999999987542 34455433221
Q ss_pred ChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc---------c----hhhcCCCCC--CCCC
Q 007268 218 DVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD---------L----LDVGIPHGD--DHKG 282 (610)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~---------~----~~l~~~l~~--~~~g 282 (610)
+.. .......+..+.+......++++++|+++.... . ..+...+.. ....
T Consensus 82 ~~~---------------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 82 NMY---------------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp SST---------------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred hhh---------------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 100 000011233344433234679999999975311 0 111111111 1223
Q ss_pred eEEEEEeccccccccc-C---CccceecCCCCCHHHHHHHHHHHhC
Q 007268 283 CKVLFTARSEEVLSGE-M---ESRKNFPVGFLKEEEAWSLFKKMAG 324 (610)
Q Consensus 283 s~IivTTR~~~va~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (610)
.-++.+|....+.... . .-...+.++..+.++-.++|.....
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 4455667666543111 1 2345788999999999999988764
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.15 E-value=0.00067 Score=68.04 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=36.8
Q ss_pred CccccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 155 AFESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.++|+...+.++.+.+. ......|.|+|.+|+|||++|+.+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 57888888888877665 23445688999999999999999998654
No 78
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.12 E-value=0.0009 Score=76.10 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=59.5
Q ss_pred cCccccHHHHHHHHHHhcC---------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHH
Q 007268 154 EAFESRASILNEIMDALKN---------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQG 224 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (610)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++++......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~---- 528 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERH---- 528 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSS----
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchh----
Confidence 3578888888887776641 1234799999999999999999998773 234556655432210
Q ss_pred HHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCc
Q 007268 225 EIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWEN 266 (610)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~ 266 (610)
.+...+|.+.. -...+....+...+......+|+||+++..
T Consensus 529 ~~~~l~g~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 529 TVSRLIGAPPG-YVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp CCSSSCCCCSC-SHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred hHhhhcCCCCC-CcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 00011122111 000011122334444345689999999754
No 79
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.06 E-value=0.0044 Score=66.19 Aligned_cols=172 Identities=15% Similarity=0.174 Sum_probs=92.5
Q ss_pred CCCcCccccHHHHHHHHHHh---cCC---------CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 151 KDYEAFESRASILNEIMDAL---KNP---------NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L---~~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
.....++|.++.+.++.+.. ..+ -.+-+.|+|++|+|||+||+.++..... ..+.++.+.-..
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~ 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVE 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHH
Confidence 34567889888776665443 221 1234899999999999999999987642 234454432111
Q ss_pred hHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhC---CCeEEEEEeCCCCcc------------c----chhhcCCCCC-
Q 007268 219 VRKIQGEIADKLGLKFDVESESGRARILYDRLKK---EERILVILDNIWENL------------D----LLDVGIPHGD- 278 (610)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~---~kr~LLVLDdv~~~~------------~----~~~l~~~l~~- 278 (610)
. ........+...+.. ..+.++++|+++... . ...+...+..
T Consensus 103 ~------------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 M------------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp S------------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred h------------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 0 000111112222221 245899999995321 0 1122111111
Q ss_pred -CCCCeEEEEEeccccccc-ccC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCch
Q 007268 279 -DHKGCKVLFTARSEEVLS-GEM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGLP 347 (610)
Q Consensus 279 -~~~gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (610)
...+..++.||....... ... .-...+.+...+.++-.+++..++......++ .....|+..+.|+.
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS--STTHHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH--HHHHHHHHhcCCCC
Confidence 122344555666655432 111 12347889989999888999877643221111 11345777777765
No 80
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.04 E-value=0.00073 Score=68.56 Aligned_cols=45 Identities=16% Similarity=0.332 Sum_probs=37.7
Q ss_pred cCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 154 EAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..++|+++.+..+...+..+ .-+.|+|++|+|||+||+.+++...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 46789999998888777643 3688999999999999999998764
No 81
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.01 E-value=0.0032 Score=62.51 Aligned_cols=86 Identities=9% Similarity=0.099 Sum_probs=58.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCC-----CChhHHH-HHHHHH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDV-----ESESGRA-RILYDR 249 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~l~~~ 249 (610)
.++.|.|++|+|||||+.+++.....+..-..++|++....++.. .+++++.+.+. ....+.+ ..+.+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 378999999999999999988776543112478999988887753 36778776432 1222222 334444
Q ss_pred H---hCCCeEEEEEeCCCCc
Q 007268 250 L---KKEERILVILDNIWEN 266 (610)
Q Consensus 250 L---~~~kr~LLVLDdv~~~ 266 (610)
+ .+++.-|||+|-+...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 4 4567889999998543
No 82
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.90 E-value=0.0055 Score=58.70 Aligned_cols=90 Identities=12% Similarity=0.094 Sum_probs=55.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCC----CCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC----------CCCh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDK----LFDQVVLSEVSESRDVRKIQGEIADKLGLKFD----------VESE 239 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------~~~~ 239 (610)
...++.|+|++|+|||||+..++....... .-..++|++....+....+ ..++..++.... ....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346999999999999999999998643211 1357889988776555443 344555554320 1111
Q ss_pred hH---HHHHHHHHHhCCCeEEEEEeCCC
Q 007268 240 SG---RARILYDRLKKEERILVILDNIW 264 (610)
Q Consensus 240 ~~---~~~~l~~~L~~~kr~LLVLDdv~ 264 (610)
.+ .+..+.+.+...+.-+||+|.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 11 12334444444567899999874
No 83
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.85 E-value=0.0044 Score=63.19 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=56.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC------CCChhHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFD------VESESGRARILY 247 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 247 (610)
...++.|.|++|+||||||.+++...... -..++|++....++.. .++.++...+ ..+..+.+..+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 34799999999999999999999876543 2357888887766654 4556665432 122333333444
Q ss_pred HHHhCCCeEEEEEeCCCC
Q 007268 248 DRLKKEERILVILDNIWE 265 (610)
Q Consensus 248 ~~L~~~kr~LLVLDdv~~ 265 (610)
..+...+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 334445566899998854
No 84
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.80 E-value=0.0076 Score=56.70 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=36.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKL 230 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (610)
...++.|+|.+|+|||||+..++. .. -..++|++.....+...+. .+...+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~-~~~~~~ 69 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLV-QMAETR 69 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHH-HHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHH-HHHHhc
Confidence 346999999999999999999988 21 3478888887755555443 344433
No 85
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.79 E-value=0.0061 Score=62.09 Aligned_cols=90 Identities=16% Similarity=0.249 Sum_probs=56.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCC----CCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC----------CCCh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDK----LFDQVVLSEVSESRDVRKIQGEIADKLGLKFD----------VESE 239 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------~~~~ 239 (610)
...++.|+|.+|+|||+||.+++....... .-..++|++....++...+. .++..++.+.. ..+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 457999999999999999999988743211 13478999998877766554 34555555321 0111
Q ss_pred h---HHHHHHHHHHhC--CCeEEEEEeCCC
Q 007268 240 S---GRARILYDRLKK--EERILVILDNIW 264 (610)
Q Consensus 240 ~---~~~~~l~~~L~~--~kr~LLVLDdv~ 264 (610)
. ..+..+...+.+ .+.-+||+|.+.
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 1 222333344433 456688888773
No 86
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.76 E-value=0.0015 Score=75.21 Aligned_cols=60 Identities=23% Similarity=0.409 Sum_probs=42.6
Q ss_pred CccccHHHHHHHHHHhcC-------C--CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 155 AFESRASILNEIMDALKN-------P--NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~~-------~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
.++|.+..+..+...+.. + ....+.|+|++|+|||++|+.+++..... -...+.++++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~--~~~~i~i~~~~~ 627 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEY 627 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECTTTC
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhc
Confidence 478999988888776641 1 12589999999999999999999876432 123455555543
No 87
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.73 E-value=0.0011 Score=66.01 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=44.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEe--CCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEV--SESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
.+++.|+|++|+|||+||.+++.... ..++|+++ ....+. ........+..+.+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhh
Confidence 35788999999999999999988621 13456666 222111 002334445556666664
Q ss_pred CCeEEEEEeCCCC
Q 007268 253 EERILVILDNIWE 265 (610)
Q Consensus 253 ~kr~LLVLDdv~~ 265 (610)
.+ +||+|++..
T Consensus 183 -~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 -HR-VIVIDSLKN 193 (331)
T ss_dssp -CS-EEEEECCTT
T ss_pred -CC-EEEEecccc
Confidence 34 999999854
No 88
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.67 E-value=0.0025 Score=60.57 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=32.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGE 225 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (610)
..+++|.|++|+|||||++.++...... -..++|+.... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHH
Confidence 4689999999999999999998665432 23566666543 34444333
No 89
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.59 E-value=0.0072 Score=61.94 Aligned_cols=84 Identities=21% Similarity=0.232 Sum_probs=54.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC------CCChhHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFD------VESESGRARILY 247 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 247 (610)
...++.|.|.+|+||||||.+++...... -..++|++....++.. .+..++.+.+ ..+..+....+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 34689999999999999999998776543 2478999998766543 2455655422 122233333333
Q ss_pred HHHhCCCeEEEEEeCCC
Q 007268 248 DRLKKEERILVILDNIW 264 (610)
Q Consensus 248 ~~L~~~kr~LLVLDdv~ 264 (610)
........-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 33333455699999884
No 90
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.56 E-value=0.0044 Score=70.60 Aligned_cols=151 Identities=15% Similarity=0.222 Sum_probs=85.4
Q ss_pred CcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh
Q 007268 153 YEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV 219 (610)
Q Consensus 153 ~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~ 219 (610)
...++|.+..+++|.+++. -.....|.|+|++|+||||||+.++..... ..+.++.+....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~-----~~i~v~~~~l~~- 276 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPEIMS- 276 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC-----EEEEEEHHHHSS-
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-----cEEEEEchHhhh-
Confidence 4568888888877777653 134567999999999999999999886532 223443221100
Q ss_pred HHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCccc----------------chhhcCCCCCCCCCe
Q 007268 220 RKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENLD----------------LLDVGIPHGDDHKGC 283 (610)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~~----------------~~~l~~~l~~~~~gs 283 (610)
.. .......+..+.+......+.++++|+++.... +..+...+. ...+.
T Consensus 277 -------------~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v 341 (806)
T 1ypw_A 277 -------------KL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHV 341 (806)
T ss_dssp -------------SS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCC
T ss_pred -------------hh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccE
Confidence 00 001112233344443334679999999853210 111111111 12344
Q ss_pred EEEEEecccccccccC----CccceecCCCCCHHHHHHHHHHHhC
Q 007268 284 KVLFTARSEEVLSGEM----ESRKNFPVGFLKEEEAWSLFKKMAG 324 (610)
Q Consensus 284 ~IivTTR~~~va~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (610)
.+|.||.......... .-...+.+...+.++-.+++...+.
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 5666665543221111 1224678888899999999988764
No 91
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.55 E-value=0.0074 Score=61.56 Aligned_cols=83 Identities=22% Similarity=0.294 Sum_probs=54.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCC------CChhHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDV------ESESGRARILY 247 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 247 (610)
...++.|+|.+|+||||||.+++...... -..++|++....++.. .+..++...+. .+..+.. .+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l-~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQAL-EIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHH-HHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHH-HHH
Confidence 34789999999999999999998776543 2468899988766543 35556654321 1222223 233
Q ss_pred HHH-hCCCeEEEEEeCCC
Q 007268 248 DRL-KKEERILVILDNIW 264 (610)
Q Consensus 248 ~~L-~~~kr~LLVLDdv~ 264 (610)
..+ .+.+.-+||+|.+.
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 333 33456799999874
No 92
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.54 E-value=0.0078 Score=60.68 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=56.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCC---------CC-----CeEEEEEeCCCCChHHHHHHHHHhhCCCCC----
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDK---------LF-----DQVVLSEVSESRDVRKIQGEIADKLGLKFD---- 235 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---------~f-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---- 235 (610)
...++.|+|.+|+|||+||.+++....... .. ..++|++....++...+.. ++..++.+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 347999999999999999999987632110 01 4789999888877766553 4556665421
Q ss_pred ------CCChh---HHHHHHHHHHhC-CCeEEEEEeCCC
Q 007268 236 ------VESES---GRARILYDRLKK-EERILVILDNIW 264 (610)
Q Consensus 236 ------~~~~~---~~~~~l~~~L~~-~kr~LLVLDdv~ 264 (610)
..+.. +.+..+...+.+ .+.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 01111 123344444444 456688888874
No 93
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.50 E-value=0.0078 Score=60.77 Aligned_cols=90 Identities=21% Similarity=0.295 Sum_probs=57.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCC----CCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC----------CCCh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDK----LFDQVVLSEVSESRDVRKIQGEIADKLGLKFD----------VESE 239 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------~~~~ 239 (610)
...++.|+|.+|+|||+||.+++....... .-..++|++....++...+. .++..++.+.. ..+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 346999999999999999999987753221 02478999988877766554 44566655421 1111
Q ss_pred h---HHHHHHHHHHhC-CCeEEEEEeCCC
Q 007268 240 S---GRARILYDRLKK-EERILVILDNIW 264 (610)
Q Consensus 240 ~---~~~~~l~~~L~~-~kr~LLVLDdv~ 264 (610)
. ..+..+...+.+ .+.-+||+|.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 1 123344444443 467788888874
No 94
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.48 E-value=0.0034 Score=62.98 Aligned_cols=89 Identities=22% Similarity=0.283 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHhcCC---CceEEEEEecCCchHHHHHHHHHHHhc-cCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCC
Q 007268 159 RASILNEIMDALKNP---NVNMLLIYGMGGIGKTTLAKKVARKAE-SDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKF 234 (610)
Q Consensus 159 R~~~~~~L~~~L~~~---~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 234 (610)
+...+..+.+++... ....+.|+|++|+|||+||..+++... .. -..+.+++++ +++..+.......
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~~~------~l~~~l~~~~~~~- 203 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLHFP------SFAIDVKNAISNG- 203 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEEHH------HHHHHHHCCCC---
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEHH------HHHHHHHHHhccc-
Confidence 444555555666531 247889999999999999999999876 43 2245555543 3444443322110
Q ss_pred CCCChhHHHHHHHHHHhCCCeEEEEEeCCCC
Q 007268 235 DVESESGRARILYDRLKKEERILVILDNIWE 265 (610)
Q Consensus 235 ~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~ 265 (610)
. .......+. +.-||||||+..
T Consensus 204 ---~----~~~~~~~~~--~~~lLiiDdig~ 225 (308)
T 2qgz_A 204 ---S----VKEEIDAVK--NVPVLILDDIGA 225 (308)
T ss_dssp ---------CCTTHHHH--TSSEEEEETCCC
T ss_pred ---h----HHHHHHHhc--CCCEEEEcCCCC
Confidence 0 111223333 234899999953
No 95
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.46 E-value=0.018 Score=58.49 Aligned_cols=159 Identities=9% Similarity=-0.062 Sum_probs=96.4
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
.-.++..++|+.|.||++.+..+....... .|+....+.+....++.++...+.. ..+ -
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~pl-f 74 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA-------------------MSL-F 74 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH-------------------HHH-C
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC-------------------cCC-c
Confidence 345799999999999999999998875432 2433222233333444443332211 011 2
Q ss_pred CCeEEEEEeCCCC-c--ccchhhcCCCCCCCCCeEEEEEeccc-------ccccccCCccceecCCCCCHHHHHHHHHHH
Q 007268 253 EERILVILDNIWE-N--LDLLDVGIPHGDDHKGCKVLFTARSE-------EVLSGEMESRKNFPVGFLKEEEAWSLFKKM 322 (610)
Q Consensus 253 ~kr~LLVLDdv~~-~--~~~~~l~~~l~~~~~gs~IivTTR~~-------~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 322 (610)
+++-++|+|+++. . ..++.+...+....+++.+|++|... .+..........+...+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 4677889999865 3 34444443333334567777666431 222222344578999999999999888887
Q ss_pred hCCCCCCchHHHHHHHHHHHcCCchHHHHHH
Q 007268 323 AGDYVEGSELEEVARNVVEECAGLPVSIVTV 353 (610)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~GlPLai~~i 353 (610)
+....-. -..+.+..|++.++|.+..+...
T Consensus 155 ~~~~g~~-i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNLE-LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTCE-ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCCC-CCHHHHHHHHHHhchHHHHHHHH
Confidence 7422211 11356778999999988877654
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.43 E-value=0.0036 Score=55.44 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=30.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
....+.|+|+.|+|||||++.++...... .+ .++++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 55789999999999999999999887542 11 256666543
No 97
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.36 E-value=0.0092 Score=60.94 Aligned_cols=84 Identities=24% Similarity=0.305 Sum_probs=53.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCC-----CChhHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDV-----ESESGRARILYD 248 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~ 248 (610)
...++.|.|.+|+||||||.+++...... -..++|++....++.. .+..++.+.+. ....+.+..+.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 34689999999999999999998876543 2368899988776643 24555554221 111222223333
Q ss_pred HH-hCCCeEEEEEeCCC
Q 007268 249 RL-KKEERILVILDNIW 264 (610)
Q Consensus 249 ~L-~~~kr~LLVLDdv~ 264 (610)
.+ ...+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 33 23455689999873
No 98
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.35 E-value=0.0093 Score=61.86 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=54.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCC----CCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC----------CCCh-
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDK----LFDQVVLSEVSESRDVRKIQGEIADKLGLKFD----------VESE- 239 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------~~~~- 239 (610)
..++.|+|++|+|||||+..++-...... .-..++|++....+....+ ..+++.++.... ....
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 46999999999999999998764432211 2346889988776655443 446666665421 0111
Q ss_pred --hHHHHHHHHHHhCCCeEEEEEeCCC
Q 007268 240 --SGRARILYDRLKKEERILVILDNIW 264 (610)
Q Consensus 240 --~~~~~~l~~~L~~~kr~LLVLDdv~ 264 (610)
...+..+...+...+.-+||+|.+.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchh
Confidence 1222333444444567888899763
No 99
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.20 E-value=0.018 Score=57.16 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=49.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC-CCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE-SRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
+..+++|+|.+|+||||++..++........ ..+..+.... .....+.+.......+.+.........+......+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--
Confidence 4579999999999999999999887764211 2455555433 22333444445555554432222222222223333
Q ss_pred CCeEEEEEeCC
Q 007268 253 EERILVILDNI 263 (610)
Q Consensus 253 ~kr~LLVLDdv 263 (610)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 23458888944
No 100
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.03 E-value=0.026 Score=53.30 Aligned_cols=91 Identities=23% Similarity=0.244 Sum_probs=53.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccC---C-CCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC----------CCCh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESD---K-LFDQVVLSEVSESRDVRKIQGEIADKLGLKFD----------VESE 239 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~-~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------~~~~ 239 (610)
...+++|+|++|+|||||++.++...... . ....++|+.......... +..+.+..+.... ....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 102 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence 34799999999999999999998754321 0 134688887665444332 3344444443211 0011
Q ss_pred ---hHHHHHHHHHHh-----CCCeEEEEEeCCCC
Q 007268 240 ---SGRARILYDRLK-----KEERILVILDNIWE 265 (610)
Q Consensus 240 ---~~~~~~l~~~L~-----~~kr~LLVLDdv~~ 265 (610)
......+...+. ..++-+||||....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 111233444444 45788999998754
No 101
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.02 E-value=0.0074 Score=56.27 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=34.7
Q ss_pred ccHHHHHHHHHHhcC---CCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 158 SRASILNEIMDALKN---PNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 158 GR~~~~~~L~~~L~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.|++.++.|.+.+.. ....+|+|.|..|+||||+++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356677777777653 45679999999999999999999887643
No 102
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.00 E-value=0.006 Score=59.56 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=40.2
Q ss_pred cCccccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 154 EAFESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
..++|++..+.++.+.+. ......|.|+|.+|+|||++|+.+++..... -...+.++++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~ 68 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence 457898888887776554 2233568899999999999999999875432 123455666543
No 103
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.82 E-value=0.06 Score=56.24 Aligned_cols=29 Identities=38% Similarity=0.537 Sum_probs=25.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
++.+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999998877653
No 104
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.80 E-value=0.038 Score=52.79 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=30.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
..++.|.|.+|+||||||.+++...... -..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 4689999999999999999887765432 24677877654
No 105
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.79 E-value=0.0077 Score=60.44 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=30.6
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
++.++|+|.|-|||||||.+..++.-.... -..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~--GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 467999999999999999999888776653 12355555553
No 106
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.77 E-value=0.057 Score=54.11 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=39.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
...++.|.|.+|+||||||.+++.....+. ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 346899999999999999999988766542 578888766 4566677666654
No 107
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.70 E-value=0.0053 Score=62.48 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=37.4
Q ss_pred CCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 151 KDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 151 ~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.....++|.+..+..+...+..+...-+.|+|++|+|||+||+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34567899988766655444333344599999999999999999998764
No 108
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.70 E-value=0.0098 Score=55.73 Aligned_cols=41 Identities=22% Similarity=0.460 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcC--CCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 161 SILNEIMDALKN--PNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 161 ~~~~~L~~~L~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
+.+++|.+.+.. +...+|+|+|+.|+|||||++.+......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456666666652 45689999999999999999999887653
No 109
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.63 E-value=0.029 Score=57.13 Aligned_cols=58 Identities=24% Similarity=0.266 Sum_probs=38.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCC----CeEEEEEeCCCCChHHHHHHHHHhhCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLF----DQVVLSEVSESRDVRKIQGEIADKLGL 232 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f----~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (610)
...++.|+|++|+|||||+..++......... ..++|++....+.... +..+++.++.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~ 191 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 191 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCC
Confidence 45799999999999999999998875321001 2458888766544333 3345554443
No 110
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.54 E-value=0.0073 Score=54.82 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=22.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999998764
No 111
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.51 E-value=0.094 Score=54.92 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=49.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCCCCC----CCChhHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGLKFD----VESESGRARILYD 248 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~ 248 (610)
++++|.++|.+|+||||++..++.....+... .+..+++... ....+.+.......+.+.- ..+....+.....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 46899999999999999999999887654122 4555555432 2333333334444444311 1122333344444
Q ss_pred HHhCCCeEEEEEeCC
Q 007268 249 RLKKEERILVILDNI 263 (610)
Q Consensus 249 ~L~~~kr~LLVLDdv 263 (610)
.+....-=++|+|-.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 444222236677875
No 112
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.48 E-value=0.028 Score=53.92 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=27.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc-cCCCCCeEEEEEeC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE-SDKLFDQVVLSEVS 214 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~f~~~~wv~vs 214 (610)
...+++|+|+.|+|||||++.++.... .. -...+++...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEcc
Confidence 346999999999999999999884322 11 2345555543
No 113
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.48 E-value=0.023 Score=55.14 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=29.2
Q ss_pred HHHHHHHhcCC--CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 163 LNEIMDALKNP--NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 163 ~~~L~~~L~~~--~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+..||... ....+.|+|++|+|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 44567777643 34579999999999999999999863
No 114
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.45 E-value=0.073 Score=55.58 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=35.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGL 232 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~ 232 (610)
.+.+|.++|++|+||||++..++.....+. ..+..++.... ....+.+.......+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D~~r~~a~eqL~~~~~~~gv 153 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAADVYRPAAYDQLLQLGNQIGV 153 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecCccchhHHHHHHHHHHhcCC
Confidence 468999999999999999999988776532 23444444321 1222333444444444
No 115
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.39 E-value=0.0091 Score=53.73 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+|+|.|++|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 116
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.36 E-value=0.0091 Score=56.60 Aligned_cols=112 Identities=13% Similarity=0.014 Sum_probs=60.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCC---CChhHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDV---ESESGRARILYDRL 250 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~L 250 (610)
...++.|+|..|+||||++..++.+.... -..++.+....... ....++..++..... ....+....+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 45789999999999999999999887654 22344443332211 222455556654322 11222222222222
Q ss_pred hCCCeEEEEEeCCCCc--ccchhhcCCCCCCCCCeEEEEEecccc
Q 007268 251 KKEERILVILDNIWEN--LDLLDVGIPHGDDHKGCKVLFTARSEE 293 (610)
Q Consensus 251 ~~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~ 293 (610)
..++.-+||+|.+... +.++.+. .+.+ .|..||+|-+...
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 2234559999998642 2222221 1111 2567888887543
No 117
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.36 E-value=0.018 Score=53.12 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=60.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCC---------CCCCCC-------h
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGL---------KFDVES-------E 239 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~---------~~~~~~-------~ 239 (610)
..|.|++-.|.||||+|.-.+-+.... =-.+.++..-+.. ...--..++..++. ...... .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~--G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH--GKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT--TCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 466777777799999999998887653 2244555443321 11112233444421 111111 0
Q ss_pred hHHHHHHHHHHhCCCeEEEEEeCCCCc-----ccchhhcCCCCCCCCCeEEEEEecccc
Q 007268 240 SGRARILYDRLKKEERILVILDNIWEN-----LDLLDVGIPHGDDHKGCKVLFTARSEE 293 (610)
Q Consensus 240 ~~~~~~l~~~L~~~kr~LLVLDdv~~~-----~~~~~l~~~l~~~~~gs~IivTTR~~~ 293 (610)
........+.+..++-=|||||++... ...+.+...+........||+|+|...
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 112334444554455569999998422 122222222222334557999999875
No 118
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.33 E-value=0.025 Score=57.70 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=53.6
Q ss_pred HHHHHhc-CCCceEEEEEecCCchHHHHHHHHHHHhccCC-CCCeEEEEEeCCCCChHHHHHHHHHhhCC----CCCCCC
Q 007268 165 EIMDALK-NPNVNMLLIYGMGGIGKTTLAKKVARKAESDK-LFDQVVLSEVSESRDVRKIQGEIADKLGL----KFDVES 238 (610)
Q Consensus 165 ~L~~~L~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~f~~~~wv~vs~~~~~~~~~~~i~~~l~~----~~~~~~ 238 (610)
+.++.+. -.+...++|+|.+|+|||||++.+.+....++ .+. ++++-+++..... .++.+.+.. ....++
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev---~~~~~~~~~~vV~atadep 238 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEV---TEMQRLVKGEVVASTFDEP 238 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHH---HHHHTTCSSEEEEECTTSC
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHH---HHHHHHhCeEEEEeCCCCC
Confidence 3455544 23456899999999999999999887654321 132 4456666554221 122232211 011111
Q ss_pred hhHH------HHHHHHHHh-CCCeEEEEEeCCCC
Q 007268 239 ESGR------ARILYDRLK-KEERILVILDNIWE 265 (610)
Q Consensus 239 ~~~~------~~~l~~~L~-~~kr~LLVLDdv~~ 265 (610)
.... .-.+.+++. +++.+||++||+..
T Consensus 239 ~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 239 ASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 1111 112233333 58999999999853
No 119
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.30 E-value=0.035 Score=68.05 Aligned_cols=84 Identities=21% Similarity=0.255 Sum_probs=57.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC------CCChhHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFD------VESESGRARILY 247 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 247 (610)
..+.|.|+|++|+|||+||.+++.....+ =..++|+++...++... ++.++.+.+ ..+.......+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 46799999999999999999998876543 34678888888776654 455564321 122233344444
Q ss_pred HHHhCCCeEEEEEeCCC
Q 007268 248 DRLKKEERILVILDNIW 264 (610)
Q Consensus 248 ~~L~~~kr~LLVLDdv~ 264 (610)
....+.+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 44445678899999984
No 120
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.24 E-value=0.1 Score=66.16 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=49.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCe
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFDVESESGRARILYDRLKKEER 255 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr 255 (610)
+-|.++|++|+|||++|+.+..... .+ ..+.++.+...+...+...+-..+.......... ..--..+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 5788999999999999988776532 12 4566788877777776666655543211000000 000002578
Q ss_pred EEEEEeCCC
Q 007268 256 ILVILDNIW 264 (610)
Q Consensus 256 ~LLVLDdv~ 264 (610)
++|.+||++
T Consensus 1338 ~VlFiDEin 1346 (2695)
T 4akg_A 1338 LVLFCDEIN 1346 (2695)
T ss_dssp EEEEEETTT
T ss_pred EEEEecccc
Confidence 999999975
No 121
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.22 E-value=0.041 Score=57.74 Aligned_cols=88 Identities=19% Similarity=0.303 Sum_probs=52.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCC-------CCCCCChhHH-----
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGL-------KFDVESESGR----- 242 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~----- 242 (610)
..++|+|.+|+|||||+..+......+. ...++++.+++.. ...+++.++...-.. ....++....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 4689999999999999999988765432 2345666666554 344555555432100 0011111111
Q ss_pred -HHHHHHHHh--CCCeEEEEEeCCC
Q 007268 243 -ARILYDRLK--KEERILVILDNIW 264 (610)
Q Consensus 243 -~~~l~~~L~--~~kr~LLVLDdv~ 264 (610)
.-.+.+++. ++++.||++||+.
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHH
Confidence 123444443 4899999999994
No 122
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.19 E-value=0.011 Score=53.26 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=19.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
.+|+|.|++|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47999999999999999999 44
No 123
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.16 E-value=0.012 Score=53.45 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.7
Q ss_pred eEEEEEecCCchHHHHHHHHHH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~ 197 (610)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 124
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.16 E-value=0.012 Score=54.64 Aligned_cols=27 Identities=41% Similarity=0.544 Sum_probs=23.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+|.|+|++|+||||+++.++....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998764
No 125
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.11 E-value=0.014 Score=54.24 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=25.6
Q ss_pred CCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 172 NPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 172 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.....+|+|+|++|+||||+++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999998875
No 126
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.10 E-value=0.083 Score=52.87 Aligned_cols=42 Identities=14% Similarity=0.051 Sum_probs=29.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
.+.+|+|.|+.|+|||||++.+.........-..+..+....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 456999999999999999999987765311112345555544
No 127
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.09 E-value=0.015 Score=53.41 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999988763
No 128
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.08 E-value=0.18 Score=53.72 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=27.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEe
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEV 213 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~v 213 (610)
+.++|+|+|.+|+||||++..++.....+. ..+..|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G--~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG--WKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEec
Confidence 467999999999999999999998776431 23444544
No 129
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.06 E-value=0.014 Score=53.68 Aligned_cols=25 Identities=40% Similarity=0.574 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999865
No 130
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.06 E-value=0.02 Score=54.11 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 163 LNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 163 ~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.+.+...+.......|+|+|.+|+|||||+..+......
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 344445444456789999999999999999999987543
No 131
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.04 E-value=0.068 Score=53.21 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=48.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCCh--HHHHHHHHHhhCCCCC----CCChhHH-HHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDV--RKIQGEIADKLGLKFD----VESESGR-ARIL 246 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~----~~~~~~~-~~~l 246 (610)
...++.|+|++|+||||++..++...... -..+.++... .+.. .+-+...++.++.+.- ....... ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45799999999999999999999887643 2245555543 2222 2223344555554321 1111111 1233
Q ss_pred HHHHhCCCeEEEEEeCCC
Q 007268 247 YDRLKKEERILVILDNIW 264 (610)
Q Consensus 247 ~~~L~~~kr~LLVLDdv~ 264 (610)
...+.. ..-++|+|-.-
T Consensus 180 ~~a~~~-~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALAR-NKDVVIIDTAG 196 (306)
T ss_dssp HHHHHT-TCSEEEEEECC
T ss_pred HHHHhc-CCCEEEEECCC
Confidence 333443 44578888664
No 132
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.04 E-value=0.014 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.526 Sum_probs=23.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+.|.|+|++|+||||+|+.++....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998764
No 133
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.02 E-value=0.016 Score=53.00 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.3
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
....+|.|.|++|+||||+++.++.....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34578999999999999999999988764
No 134
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.01 E-value=0.014 Score=54.20 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
....+|+|+|+.|+|||||++.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998876
No 135
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.92 E-value=0.016 Score=53.14 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=23.3
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.+|.|.|++|+||||+|+.+......
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999988763
No 136
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.89 E-value=0.013 Score=52.92 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=22.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+|+|+|+.|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998754
No 137
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.87 E-value=0.025 Score=57.89 Aligned_cols=45 Identities=24% Similarity=0.269 Sum_probs=36.0
Q ss_pred ccccHHHHHHHHHHhc-------------C--CCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 156 FESRASILNEIMDALK-------------N--PNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 156 ~vGR~~~~~~L~~~L~-------------~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
++|.+..++.+...+. . ...+.+.|+|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788888888877662 1 1346789999999999999999998863
No 138
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.86 E-value=0.013 Score=62.51 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=37.4
Q ss_pred cCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 154 EAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 154 ~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..++|+++.++.+...+..+ .-|.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 35789999998888777644 4788999999999999999998764
No 139
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.85 E-value=0.017 Score=52.74 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=22.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999988653
No 140
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.84 E-value=0.16 Score=50.20 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=51.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHHHhhCCCCC----CCChhHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIADKLGLKFD----VESESGRARILYDR 249 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~ 249 (610)
..+++++|.+|+||||++..++...... -..+.++..... ....+.+.......+.+.- ..+....+....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5799999999999999999998877643 234566655432 2233334445555555421 12233333445555
Q ss_pred HhCCCeEEEEEeCCC
Q 007268 250 LKKEERILVILDNIW 264 (610)
Q Consensus 250 L~~~kr~LLVLDdv~ 264 (610)
+.....=++++|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 542233378888753
No 141
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.82 E-value=0.015 Score=53.99 Aligned_cols=26 Identities=19% Similarity=0.503 Sum_probs=23.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+|+|.|+.|+||||+|+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988763
No 142
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.75 E-value=0.018 Score=52.79 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=23.3
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.+|.|.|++|+||||+++.+......
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987653
No 143
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.72 E-value=0.016 Score=52.73 Aligned_cols=26 Identities=42% Similarity=0.663 Sum_probs=22.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.++|.|+|++|+||||+++.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 144
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.71 E-value=0.036 Score=54.87 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=35.1
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCC-CCCeEEEEEeCCCCChHHHHHHHH
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDK-LFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
.+..+|+|+|..|+||||||+.+........ ....+..|+...-.-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 4567999999999999999999887765321 022344445554333334444443
No 145
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.68 E-value=0.023 Score=53.42 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 160 ASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 160 ~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+..+.+...+...+.++|+|+|.+|+|||||+..+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33444555554445678999999999999999999988764
No 146
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.66 E-value=0.022 Score=52.42 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=23.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+..+|+|.|++|+||||+|+.+.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998764
No 147
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.64 E-value=0.029 Score=55.41 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 148
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.62 E-value=0.02 Score=53.61 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=24.3
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
....+++|+|+.|+|||||++.+.....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3457999999999999999999988754
No 149
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.62 E-value=0.024 Score=51.16 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=22.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..+++|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 150
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.62 E-value=0.021 Score=52.37 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+|+|.|++|+||||+|+.+.....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987753
No 151
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.58 E-value=0.021 Score=55.40 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
++|.|.|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 152
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.56 E-value=0.039 Score=55.79 Aligned_cols=43 Identities=16% Similarity=0.380 Sum_probs=31.4
Q ss_pred ccHHHHHHHHHHhc----CCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 158 SRASILNEIMDALK----NPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 158 GR~~~~~~L~~~L~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+-+...+.+++.+. .+....|.|+|++|+||||+++.++....
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 33444555555543 45566799999999999999999988765
No 153
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.55 E-value=0.017 Score=53.84 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=23.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..++|+|+|++|+|||||++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999988763
No 154
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.54 E-value=0.025 Score=51.77 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
....|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999886
No 155
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.53 E-value=0.025 Score=52.54 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+..+|+|.|+.|+||||+|+.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998765
No 156
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.52 E-value=0.042 Score=52.80 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=24.4
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+..|+|.|++|+||||+|+.+.+...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999987753
No 157
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.51 E-value=0.12 Score=51.24 Aligned_cols=88 Identities=25% Similarity=0.324 Sum_probs=49.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC-hHHHHHHHHHhhCCCCC----CCChhHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD-VRKIQGEIADKLGLKFD----VESESGRARILYD 248 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~ 248 (610)
...+++|+|.+|+||||++..++...... -..+.++....... ....+..+....+.+.- ..+..+.......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999999999887643 23455555432221 11223344555554321 1122233333444
Q ss_pred HHhCCCeEEEEEeCC
Q 007268 249 RLKKEERILVILDNI 263 (610)
Q Consensus 249 ~L~~~kr~LLVLDdv 263 (610)
.+.....=++|+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 442123457888976
No 158
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.50 E-value=0.035 Score=57.14 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+.|+|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999998763
No 159
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.48 E-value=0.018 Score=52.07 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=22.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+.|.|.|++|+||||+|+.++....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 160
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.48 E-value=0.35 Score=48.49 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=37.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC-CCChHHHHHHHHHhhCC
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE-SRDVRKIQGEIADKLGL 232 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~ 232 (610)
++..+++|+|+.|+||||+++.++...... -..+.++...- .....+.+......++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEeecccccchHHHHHHHHHHcCc
Confidence 456899999999999999999998876643 12344443322 12333444455555553
No 161
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.48 E-value=0.025 Score=52.75 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=24.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
..+|+|.|++|+||||+|+.+......
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 368999999999999999999988764
No 162
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.46 E-value=0.022 Score=52.70 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=22.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 163
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.44 E-value=0.023 Score=52.69 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=22.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 164
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.43 E-value=0.024 Score=52.24 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+|+|.|++|+||||+|+.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998764
No 165
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.43 E-value=0.026 Score=52.25 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=23.3
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHH
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
++..+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999875
No 166
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.42 E-value=0.024 Score=50.92 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=23.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+|+|.|+.|+||||+|+.+.....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998765
No 167
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.39 E-value=0.026 Score=51.44 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...|+|.|++|+||||+++.+.....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999987653
No 168
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.33 E-value=0.029 Score=52.89 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=25.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+.++|.|.|++|+||||.|+.++..+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3568999999999999999999998864
No 169
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.33 E-value=0.026 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..+++|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 170
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.32 E-value=0.03 Score=52.34 Aligned_cols=27 Identities=37% Similarity=0.343 Sum_probs=23.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988754
No 171
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.30 E-value=0.02 Score=52.29 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=22.3
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 172
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.30 E-value=0.029 Score=51.98 Aligned_cols=27 Identities=37% Similarity=0.388 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+|.|.|++|+||||+|+.+.....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999998764
No 173
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.28 E-value=0.018 Score=52.43 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=19.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+|.|.|++|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988754
No 174
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.28 E-value=0.028 Score=54.35 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=24.1
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
....+|+|.|++|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567899999999999999999988654
No 175
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.26 E-value=0.022 Score=52.37 Aligned_cols=25 Identities=36% Similarity=0.475 Sum_probs=21.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
|.|.|+|++|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4588999999999999999987754
No 176
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.26 E-value=0.03 Score=51.27 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+|+|.|++|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988754
No 177
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.26 E-value=0.1 Score=52.18 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=30.4
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
....+|+|.|+.|+|||||++.+.........-..+.++.-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 4567999999999999999999988765321112355555443
No 178
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.23 E-value=0.032 Score=62.77 Aligned_cols=173 Identities=14% Similarity=0.224 Sum_probs=83.2
Q ss_pred CCcCccccHHHHHHHHHHhc-------------CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 152 DYEAFESRASILNEIMDALK-------------NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
....+.|-++.+++|.+.+. -...+-|.++|++|+|||.||+.+++..... ++.++
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~---- 543 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK---- 543 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECC----
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEec----
Confidence 34556677887777766553 1234568899999999999999999886532 22222
Q ss_pred hHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc--------c--------chhhcCCCC--CCC
Q 007268 219 VRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL--------D--------LLDVGIPHG--DDH 280 (610)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~--------~--------~~~l~~~l~--~~~ 280 (610)
.. +++.. .-..+ ...+..+.+..+...+++|+||+++... . ...+...+. ...
T Consensus 544 ~~----~l~s~----~vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 544 GP----ELLTM----WFGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp HH----HHHTT----TCSSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred cc----hhhcc----ccchH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 11 11111 11122 3456666666666689999999986431 0 111111110 122
Q ss_pred CCeEEEEEeccccccc-ccC---CccceecCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHcCCc
Q 007268 281 KGCKVLFTARSEEVLS-GEM---ESRKNFPVGFLKEEEAWSLFKKMAGDYVEGSELEEVARNVVEECAGL 346 (610)
Q Consensus 281 ~gs~IivTTR~~~va~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 346 (610)
.+.-||.||....... ... .-...+.+..-+.++-.++|+.++......++. ....|++.+.|.
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~--dl~~la~~t~g~ 682 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGF 682 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHhCCCC
Confidence 3333444665544321 111 224567777777777778887776533222211 123455666554
No 179
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.23 E-value=0.028 Score=54.66 Aligned_cols=26 Identities=27% Similarity=0.672 Sum_probs=23.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 180
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.21 E-value=0.022 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.475 Sum_probs=22.6
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998765
No 181
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.20 E-value=0.18 Score=50.87 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=37.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
..++.|.|.+|+||||||..++...... -..++|++.. .+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCC--CCHHHHHHHHHHH
Confidence 3689999999999999999998887652 2467777664 4566666666543
No 182
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.19 E-value=0.023 Score=51.10 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=22.4
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 183
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.16 E-value=0.028 Score=51.54 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=20.3
Q ss_pred eEEEEEecCCchHHHHHHHHHH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~ 197 (610)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 184
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.15 E-value=0.032 Score=52.09 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=24.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
+..+|+|.|+.|+||||+|+.+......
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999988754
No 185
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.14 E-value=0.03 Score=52.74 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+...|.|.|++|+||||+|+.++....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998764
No 186
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.12 E-value=0.032 Score=52.07 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=26.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCe
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQ 207 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~ 207 (610)
..+|+|.|+.|+||||+++.+....... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999876543 3444
No 187
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.12 E-value=0.029 Score=53.03 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=22.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+|+|+|+.|+||||+++.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988653
No 188
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.09 E-value=0.22 Score=52.14 Aligned_cols=99 Identities=17% Similarity=0.280 Sum_probs=62.5
Q ss_pred HHHHHhcC-CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCC---------
Q 007268 165 EIMDALKN-PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLK--------- 233 (610)
Q Consensus 165 ~L~~~L~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~--------- 233 (610)
+.++.|.. .+...++|.|.+|+|||+|+.++.+..... +-+.++++-+++.. ...++.+++...-...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 34555542 344679999999999999999999876432 34667777777654 4566777776542221
Q ss_pred ----CCCCChhH------HHHHHHHHHh--CCCeEEEEEeCCC
Q 007268 234 ----FDVESESG------RARILYDRLK--KEERILVILDNIW 264 (610)
Q Consensus 234 ----~~~~~~~~------~~~~l~~~L~--~~kr~LLVLDdv~ 264 (610)
....+... ..-.+.+++. +++.+||++||+-
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 01111111 1223445554 4899999999984
No 189
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.05 E-value=0.032 Score=51.65 Aligned_cols=27 Identities=15% Similarity=0.457 Sum_probs=23.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987654
No 190
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.03 E-value=0.081 Score=48.50 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHhcc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988743
No 191
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.03 E-value=0.043 Score=49.43 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=24.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
..+++.|.|..|+|||||+..+......+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 45789999999999999999999876643
No 192
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.02 E-value=0.042 Score=53.12 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+.+|.|.|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999988754
No 193
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.02 E-value=0.033 Score=53.61 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+..+|+|+|+.|+|||||++.++....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999997764
No 194
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.97 E-value=0.031 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.4
Q ss_pred eEEEEEecCCchHHHHHHHHHH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~ 197 (610)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 195
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.93 E-value=0.032 Score=52.70 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
....|.|.|++|+||||+|+.++....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999998765
No 196
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.93 E-value=0.015 Score=59.41 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=59.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHH-HHHHHHHhhCCCCCCCChhHHHHHHHHHHhC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRK-IQGEIADKLGLKFDVESESGRARILYDRLKK 252 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (610)
...+++|+|+.|+|||||.+.+....... ....+ +++.++..... -...++.+... ..........+...|.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i-~t~ed~~e~~~~~~~~~v~q~~~---~~~~~~~~~~La~aL~- 194 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHI-LTIEDPIEFVHESKKCLVNQREV---HRDTLGFSEALRSALR- 194 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEE-EEEESSCCSCCCCSSSEEEEEEB---TTTBSCHHHHHHHHTT-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEE-EEccCcHHhhhhccccceeeeee---ccccCCHHHHHHHHhh-
Confidence 34599999999999999999987765432 11222 22222211100 00000000000 0111123335555665
Q ss_pred CCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEeccccc
Q 007268 253 EERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEV 294 (610)
Q Consensus 253 ~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 294 (610)
..+=+|++|...+.+.+..+... ...|..||+||.....
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSA 233 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSH
T ss_pred hCcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChH
Confidence 46789999999876655543322 1235568888877654
No 197
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.93 E-value=0.033 Score=52.80 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...|.|.|++|+||||+|+.++....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998653
No 198
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.92 E-value=0.026 Score=52.44 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+.++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36799999999999999999987653
No 199
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.92 E-value=0.036 Score=51.66 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+|+|+|++|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998653
No 200
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.91 E-value=0.18 Score=52.48 Aligned_cols=87 Identities=23% Similarity=0.295 Sum_probs=49.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChH--HHHHHHHHhhCCCCC----CCChhHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVR--KIQGEIADKLGLKFD----VESESGRARILY 247 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~----~~~~~~~~~~l~ 247 (610)
...++.|+|.+|+||||++..++...... -..+..+... ..... +.+.......+.+.- ..+..+.+....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeecc-ccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 35789999999999999999999887653 2345555543 33322 223444555555321 112223334444
Q ss_pred HHHhCCCeEEEEEeCC
Q 007268 248 DRLKKEERILVILDNI 263 (610)
Q Consensus 248 ~~L~~~kr~LLVLDdv 263 (610)
+.+....-=++|+|-.
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 4443222236777855
No 201
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.89 E-value=0.035 Score=49.66 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 202
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.88 E-value=0.11 Score=63.06 Aligned_cols=84 Identities=21% Similarity=0.255 Sum_probs=62.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC------CCChhHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFD------VESESGRARILY 247 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 247 (610)
+-++|-|+|+.|+||||||.++....... =...+|+++.+..++.- ++.+|.+.+ ++..++.+..+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 45899999999999999999998765543 45788999988877653 778887653 233344455555
Q ss_pred HHHhCCCeEEEEEeCCC
Q 007268 248 DRLKKEERILVILDNIW 264 (610)
Q Consensus 248 ~~L~~~kr~LLVLDdv~ 264 (610)
..++.+..-++|+|-|.
T Consensus 1503 ~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHcCCCCEEEEccHH
Confidence 55566777899999884
No 203
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.85 E-value=0.12 Score=62.60 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=56.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC------CCChhHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFD------VESESGRARILY 247 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 247 (610)
...++.|.|.+|+||||||.+++...... -..++|++........ .++.++.+.+ ..+..+....+.
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~ 803 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 803 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHH
Confidence 34689999999999999999998887643 2367888877766542 2566665421 223333333343
Q ss_pred HHHhCCCeEEEEEeCCCCc
Q 007268 248 DRLKKEERILVILDNIWEN 266 (610)
Q Consensus 248 ~~L~~~kr~LLVLDdv~~~ 266 (610)
......+.-+||+|.+...
T Consensus 804 ~lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 804 ALARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHccCCCEEEEechhhh
Confidence 3333356779999998643
No 204
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.84 E-value=0.035 Score=50.84 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=22.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 205
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.83 E-value=0.036 Score=50.48 Aligned_cols=24 Identities=42% Similarity=0.675 Sum_probs=21.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988765
No 206
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.80 E-value=0.03 Score=50.54 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=19.3
Q ss_pred CceEEEEEecCCchHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKV 195 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v 195 (610)
...+++|+|+.|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999963
No 207
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.74 E-value=0.06 Score=49.90 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=28.7
Q ss_pred HHHHHHHhcC-CCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 163 LNEIMDALKN-PNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 163 ~~~L~~~L~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+..|..++.. ++...+.|+|++|+|||++|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4555555543 2335799999999999999999998764
No 208
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.74 E-value=0.18 Score=53.03 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=63.2
Q ss_pred HHHHhc-CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHHhhCCC----------
Q 007268 166 IMDALK-NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIADKLGLK---------- 233 (610)
Q Consensus 166 L~~~L~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~---------- 233 (610)
.++.|. =.+...++|.|.+|+|||+|+.++.+..... +-+.++++-+++.. ...++++++...=...
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 344444 2344579999999999999999999886432 34677888887665 4666777776542221
Q ss_pred ----CCCCChh------HHHHHHHHHHhC--CCeEEEEEeCCC
Q 007268 234 ----FDVESES------GRARILYDRLKK--EERILVILDNIW 264 (610)
Q Consensus 234 ----~~~~~~~------~~~~~l~~~L~~--~kr~LLVLDdv~ 264 (610)
...++.. ...-.+.+++.. ++.+||++||+-
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0011111 123345566653 799999999984
No 209
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.72 E-value=0.29 Score=51.51 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=37.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIAD 228 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (610)
..++.|.|.+|+|||+||..++....... -..++|++.. .+..++...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHH
Confidence 46899999999999999999998766431 2357777665 345666666654
No 210
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.72 E-value=0.13 Score=63.32 Aligned_cols=84 Identities=21% Similarity=0.260 Sum_probs=56.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCCCC------CCChhHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLKFD------VESESGRARILY 247 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 247 (610)
...++.|+|++|+||||||.+++...... -..++|++.....+.. .++.++.+.+ ..+..+....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 45799999999999999999998887643 2468899888877653 2566666432 223333333333
Q ss_pred HHHhCCCeEEEEEeCCC
Q 007268 248 DRLKKEERILVILDNIW 264 (610)
Q Consensus 248 ~~L~~~kr~LLVLDdv~ 264 (610)
....+.+.-+||+|.+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 33334566799999875
No 211
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.71 E-value=0.025 Score=52.88 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.+|+|.|+.|+||||+++.+......
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999987653
No 212
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.69 E-value=0.079 Score=52.70 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=32.9
Q ss_pred CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 172 NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 172 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
....++|+|+|-||+||||+|..++...... -..++-|++....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence 4567899999999999999999998887654 2256677766433
No 213
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.66 E-value=0.047 Score=55.55 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=35.1
Q ss_pred HHHHHhcC-CCceEEEEEecCCchHHHHHHHHHHHhccCCCCC-eEEEEEeCCC
Q 007268 165 EIMDALKN-PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFD-QVVLSEVSES 216 (610)
Q Consensus 165 ~L~~~L~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~-~~~wv~vs~~ 216 (610)
+.++.+.. .+...++|+|.+|+|||+|+.++++..... +-+ .++++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccC
Confidence 45666652 345688999999999999999998876542 122 2355666654
No 214
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.60 E-value=0.041 Score=51.55 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.|+|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 215
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.59 E-value=0.044 Score=52.98 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+|+|.|+.|+||||+++.++....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 446999999999999999999997754
No 216
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.58 E-value=0.23 Score=46.93 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.4
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..++|.|++|+||||+|+.+.....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 217
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.55 E-value=0.26 Score=51.82 Aligned_cols=50 Identities=24% Similarity=0.242 Sum_probs=36.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIAD 228 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (610)
..++.|.|.+|+||||+|.+++.....+ -..++|++... +..++...++.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 4689999999999999999999887654 23677776654 33445555543
No 218
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.53 E-value=0.04 Score=51.04 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 219
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.52 E-value=0.04 Score=51.27 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=20.2
Q ss_pred eEEEEEecCCchHHHHHHHHHH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~ 197 (610)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.48 E-value=0.05 Score=50.88 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=24.6
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4557999999999999999999988765
No 221
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.42 E-value=0.049 Score=52.33 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998865
No 222
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.40 E-value=0.29 Score=52.39 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=40.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHH-hhCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIAD-KLGLK 233 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~-~l~~~ 233 (610)
...++.|.|.+|+|||+||.+++.....+. -..++|++... +..++...++. ..+.+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGLHNRVR 298 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHHHcCCC
Confidence 346899999999999999999998876431 23577777654 45667766653 33443
No 223
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.39 E-value=0.047 Score=50.97 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=23.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+++|+|+.|+|||||++.+.....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346999999999999999999987753
No 224
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.38 E-value=0.32 Score=51.43 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=30.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
...+++|+|..|+|||||++.++...... .+.+++.....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 46799999999999999999998876542 3444554444443
No 225
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.38 E-value=0.047 Score=49.34 Aligned_cols=36 Identities=31% Similarity=0.260 Sum_probs=27.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEE
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLS 211 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv 211 (610)
++++|+|..|+|||||++.+.........-.+.+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 589999999999999999998876653222344444
No 226
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.37 E-value=0.16 Score=48.41 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=32.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEI 226 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 226 (610)
..++.|.|.+|+|||++|.+++.....+ .-..+++++... +..++...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC--CHHHHHHHH
Confidence 4689999999999999999977553221 123566666553 344554443
No 227
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.37 E-value=0.039 Score=52.08 Aligned_cols=26 Identities=42% Similarity=0.607 Sum_probs=22.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998765
No 228
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.36 E-value=0.043 Score=60.36 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=41.0
Q ss_pred CCCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 150 NKDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 150 ~~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
+.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.....
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 344567899999988888777655 58999999999999999999987653
No 229
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.35 E-value=0.048 Score=50.36 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+|+|+|+.|+||||+++.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998864
No 230
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.34 E-value=0.046 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.|+|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 231
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.28 E-value=0.25 Score=52.07 Aligned_cols=50 Identities=12% Similarity=0.297 Sum_probs=36.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
..++.|.|.+|+||||||..++....... -..++|++... +..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 46899999999999999999998765421 12577776553 4456666654
No 232
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.28 E-value=0.052 Score=54.08 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=24.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
+..+++|+|++|+||||+++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999887664
No 233
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.27 E-value=0.058 Score=48.89 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+..+|+|.|+.|+||||+++.+.....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988764
No 234
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.27 E-value=0.052 Score=51.29 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=23.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 456999999999999999999988754
No 235
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.12 E-value=0.057 Score=56.51 Aligned_cols=47 Identities=28% Similarity=0.427 Sum_probs=35.7
Q ss_pred CccccHHHHHHHHHHhcC--------------CCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 155 AFESRASILNEIMDALKN--------------PNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~~--------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.++|.++.++.|..++.. ...+-+.++|++|+|||++|+.++.....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 567888877777555521 13466999999999999999999988753
No 236
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.09 E-value=0.063 Score=47.81 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
....+++|.|+.|+|||||++.++...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345799999999999999999999876
No 237
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.04 E-value=0.18 Score=49.84 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=35.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADK 229 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (610)
...+++|.|.+|+|||||++.++....... -..++|+.... +..++...+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHHHH
Confidence 346999999999999999999988766431 11466665543 344555444443
No 238
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.03 E-value=0.06 Score=52.97 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=21.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~ 197 (610)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 239
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.00 E-value=0.063 Score=50.41 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=21.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~ 197 (610)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 240
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.88 E-value=0.13 Score=52.32 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=29.8
Q ss_pred HHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 163 LNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 163 ~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
...+.+.+. .++..+|+|+|.+|+|||||+..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334444443 456789999999999999999999877643
No 241
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.83 E-value=0.14 Score=52.04 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=35.6
Q ss_pred hcCCCceEEEEEecCCchHHHHHHHHHHHhc--cCCCCCeEEEEEeCCCCCh
Q 007268 170 LKNPNVNMLLIYGMGGIGKTTLAKKVARKAE--SDKLFDQVVLSEVSESRDV 219 (610)
Q Consensus 170 L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~~~f~~~~wv~vs~~~~~ 219 (610)
+..+..+++.+.|.||+||||+|..++.... .. -..+.-|+.....++
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~~l 62 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAHNL 62 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCCh
Confidence 3355678999999999999999999988876 43 335667777654433
No 242
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.78 E-value=0.072 Score=50.68 Aligned_cols=26 Identities=31% Similarity=0.278 Sum_probs=23.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...|.|.|+.|+||||+|+.++....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998864
No 243
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.75 E-value=0.066 Score=49.60 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=22.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+|+|.|+.|+||||+|+.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988764
No 244
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.74 E-value=0.068 Score=50.88 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+|+|.|++|+||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988764
No 245
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.70 E-value=0.069 Score=50.01 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998763
No 246
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.69 E-value=0.069 Score=50.18 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.4
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..|.|.|++|+||||+|+.++....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998764
No 247
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.66 E-value=0.068 Score=53.80 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+|+|.|+.|+||||||..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 248
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.65 E-value=0.06 Score=51.94 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=23.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+|+|+|+.|+||||+++.++....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998764
No 249
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.62 E-value=0.072 Score=49.74 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+|.|.|++|+||+|.|+.++..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998864
No 250
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.62 E-value=0.15 Score=51.45 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=36.1
Q ss_pred cCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChH
Q 007268 171 KNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVR 220 (610)
Q Consensus 171 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 220 (610)
.+...+++.+.|-||+||||+|..++...... -..++-|+.....++.
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLS 59 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHH
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChh
Confidence 34556888999999999999999999887754 3457777776554433
No 251
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.61 E-value=0.11 Score=46.94 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=23.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.++++|+|..|+|||||+..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999887653
No 252
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.60 E-value=0.15 Score=48.35 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=25.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
....|+|.|+.|+||||+++.+......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998764
No 253
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.57 E-value=0.19 Score=53.09 Aligned_cols=44 Identities=30% Similarity=0.396 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccC
Q 007268 158 SRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESD 202 (610)
Q Consensus 158 GR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 202 (610)
+..+.+..+..++.++. +.+.|.|.+|+|||+++..+.......
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 34455666666665543 489999999999999999998887654
No 254
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.57 E-value=0.071 Score=50.40 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988763
No 255
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.50 E-value=0.13 Score=51.14 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=24.4
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
....+|+|.|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4557999999999999999999988754
No 256
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.48 E-value=0.073 Score=52.80 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.++|+|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 257
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.43 E-value=0.079 Score=52.66 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=24.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
...+++|+|+.|+||||+++.++.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999887654
No 258
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.43 E-value=0.13 Score=51.66 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=29.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVS 214 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs 214 (610)
...+++|+|.+|+||||++..++...... -..+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 45799999999999999999998877643 2345555443
No 259
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.41 E-value=0.21 Score=47.56 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=28.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEE
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSE 212 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~ 212 (610)
...|.|.|+.|+||||+++.+....... .+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeec
Confidence 4689999999999999999999988754 355344443
No 260
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.40 E-value=0.09 Score=52.07 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..++|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45789999999999999999999874
No 261
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.39 E-value=0.075 Score=53.12 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.++|.|+|+.|+||||||..++....
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999998753
No 262
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.30 E-value=0.052 Score=51.58 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=16.5
Q ss_pred ceEEEEEecCCchHHHHHHHHH-HHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVA-RKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~-~~~ 199 (610)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 263
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.29 E-value=0.068 Score=53.66 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=22.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..++|.|+|+.|+||||||..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999764
No 264
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.16 E-value=0.14 Score=53.68 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=60.1
Q ss_pred HHHHhcC-CCceEEEEEecCCchHHHHHHHHHHHhccCCC--CCeEEEEEeCCCC-ChHHHHHHHHHhhCCC-------C
Q 007268 166 IMDALKN-PNVNMLLIYGMGGIGKTTLAKKVARKAESDKL--FDQVVLSEVSESR-DVRKIQGEIADKLGLK-------F 234 (610)
Q Consensus 166 L~~~L~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~ 234 (610)
.++.|.. .+...++|.|.+|+|||+|+.++++.....+. -+.++++-+++.. ...++.+++...=... .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 4555541 23456788899999999999999998765321 1356677666554 4566666665432111 1
Q ss_pred CCCChhH------HHHHHHHHHh--CCCeEEEEEeCCC
Q 007268 235 DVESESG------RARILYDRLK--KEERILVILDNIW 264 (610)
Q Consensus 235 ~~~~~~~------~~~~l~~~L~--~~kr~LLVLDdv~ 264 (610)
..++... ....+.+++. +++.+||++||+-
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 1111111 1234555555 4899999999973
No 265
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.16 E-value=0.26 Score=46.11 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=26.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCe
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQ 207 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~ 207 (610)
...|+|.|+.|+||||+++.+....... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 4689999999999999999999888654 2444
No 266
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.13 E-value=0.071 Score=49.03 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999988764
No 267
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.06 E-value=0.085 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 268
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.05 E-value=0.094 Score=48.56 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 163 LNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 163 ~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.+.+.+.....+.--|+|+|.+|+|||||...+....
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3344444444455678999999999999999988654
No 269
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.04 E-value=0.27 Score=46.04 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=35.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIAD 228 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (610)
...|+|.|..|+||||+++.+........ +..+.+..-+....+.+.+++++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLG-IRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-CCcceeeeCCCCCHHHHHHHHHHh
Confidence 35899999999999999999999887643 423333333333334455555554
No 270
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.01 E-value=0.05 Score=53.83 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=26.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
+..+|+|.|..|+||||+|+.+....... .+ .+..++...-.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~-~~-~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRRE-GV-KAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHH-TC-CEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhc-CC-CeeEeecchhh
Confidence 45689999999999999999998865421 12 23445554433
No 271
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.00 E-value=0.14 Score=49.49 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=23.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...++.+.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999988776
No 272
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.91 E-value=0.089 Score=50.41 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.+++|+|+.|+|||||.+.++.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 799999999999999999988654
No 273
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.81 E-value=0.075 Score=55.51 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=23.8
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+...+|.|+|++|+||||+|+.++...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999988754
No 274
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.80 E-value=0.082 Score=50.46 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||.+.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 275
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.78 E-value=0.19 Score=48.64 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=30.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
++|+|.|-||+||||+|..++...... -..+..|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCCCC
Confidence 578889999999999999999887753 235666766543
No 276
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.78 E-value=0.19 Score=47.40 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=35.3
Q ss_pred CCCceEEEEEecCCchHHHHHHHHHHHhcc-CCCCCeEEEEEeCCCCChHHHHHHHHH
Q 007268 172 NPNVNMLLIYGMGGIGKTTLAKKVARKAES-DKLFDQVVLSEVSESRDVRKIQGEIAD 228 (610)
Q Consensus 172 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (610)
......|.|.|+.|+||||+++.+.+.... . .+..+....-+....+.+.+++++.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~-g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIY-GVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcc-CceeeEeeeCCCCChHHHHHHHHHh
Confidence 345679999999999999999999988765 3 2333331222222233444555554
No 277
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.71 E-value=0.33 Score=50.55 Aligned_cols=99 Identities=19% Similarity=0.245 Sum_probs=58.8
Q ss_pred HHHHhcC-CCceEEEEEecCCchHHHHHHHHHHHhccC-CCCC-eEEEEEeCCCC-ChHHHHHHHHHhhCC-------CC
Q 007268 166 IMDALKN-PNVNMLLIYGMGGIGKTTLAKKVARKAESD-KLFD-QVVLSEVSESR-DVRKIQGEIADKLGL-------KF 234 (610)
Q Consensus 166 L~~~L~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~ 234 (610)
.++.|.. .+-..++|.|.+|+|||+|+.++++..... ++-+ .++++-+++.. ...++.+++...=.. ..
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~at 220 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNL 220 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEEC
Confidence 4444441 233457899999999999999999886642 1112 56677776544 455666665442111 11
Q ss_pred CCCChhHH------HHHHHHHHh--CCCeEEEEEeCCC
Q 007268 235 DVESESGR------ARILYDRLK--KEERILVILDNIW 264 (610)
Q Consensus 235 ~~~~~~~~------~~~l~~~L~--~~kr~LLVLDdv~ 264 (610)
..++.... ...+.+++. +++.+||++||+-
T Consensus 221 sd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 221 ANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11222111 234566665 3899999999984
No 278
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.70 E-value=0.11 Score=52.96 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=24.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
...+++|+|+.|+||||+++.++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 4579999999999999999999887654
No 279
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.67 E-value=0.25 Score=46.53 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=29.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
-.|.+.|.||+||||+|..++.....+. + .+.++.+....+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G-~-~V~v~d~D~q~~ 47 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG-V-RVMAGVVETHGR 47 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT-C-CEEEEECCCTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-C-CEEEEEeCCCCC
Confidence 3478899999999999999988876542 3 344555554333
No 280
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.65 E-value=0.17 Score=53.94 Aligned_cols=46 Identities=4% Similarity=-0.016 Sum_probs=34.7
Q ss_pred ccccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 156 FESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 156 ~vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
-..|.+..+.+.+... ..+..+|.+.|++|+||||+|+.++.....
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3456555566666552 234578999999999999999999999864
No 281
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.60 E-value=0.12 Score=49.43 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+..|+|.|..|+||||+++.++....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 282
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.59 E-value=0.11 Score=47.65 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998764
No 283
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.57 E-value=0.2 Score=45.51 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998753
No 284
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.49 E-value=0.086 Score=49.92 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..+++|+|+.|+|||||.+.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987544
No 285
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.48 E-value=0.22 Score=48.90 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=30.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
.++|+|.|-||+||||+|..++...... -..+..|+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 3688889999999999999999887654 225666666543
No 286
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.41 E-value=0.35 Score=50.30 Aligned_cols=99 Identities=19% Similarity=0.239 Sum_probs=58.7
Q ss_pred HHHHhcC-CCceEEEEEecCCchHHHHHHHHHHHhccC--------CCCC-eEEEEEeCCCC-ChHHHHHHHHHhhCC--
Q 007268 166 IMDALKN-PNVNMLLIYGMGGIGKTTLAKKVARKAESD--------KLFD-QVVLSEVSESR-DVRKIQGEIADKLGL-- 232 (610)
Q Consensus 166 L~~~L~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~-- 232 (610)
.++.|.. .+...++|.|.+|+|||+|+.++++..... ++-+ .++++-+++.. ...++.+++...=..
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 4444441 233467899999999999999998886541 1222 56677776554 455566655432101
Q ss_pred -----CCCCCChhH------HHHHHHHHHh--CCCeEEEEEeCCC
Q 007268 233 -----KFDVESESG------RARILYDRLK--KEERILVILDNIW 264 (610)
Q Consensus 233 -----~~~~~~~~~------~~~~l~~~L~--~~kr~LLVLDdv~ 264 (610)
....++... ....+.+++. +++.+||++||+-
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 111112111 1234566665 3899999999984
No 287
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.35 E-value=0.13 Score=48.89 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999988654
No 288
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.34 E-value=0.098 Score=49.99 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=23.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+++|+|+.|+|||||++.++.-..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999986543
No 289
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.29 E-value=0.12 Score=51.32 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+...+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445799999999999999999998776
No 290
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.24 E-value=0.13 Score=49.88 Aligned_cols=110 Identities=13% Similarity=0.138 Sum_probs=55.6
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC-CChHHHHHHHH--HhhCCCCCCCChhHHHHHHHHH
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES-RDVRKIQGEIA--DKLGLKFDVESESGRARILYDR 249 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~--~~l~~~~~~~~~~~~~~~l~~~ 249 (610)
....+++|+|+.|+|||||++.+....... +.+.+++.-... .-.... ..++ ..++.. .......+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~-----~~~l~~~la~a 94 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGED-----TKSFADALRAA 94 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTTT-----BSCHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCCC-----HHHHHHHHHHH
Confidence 345799999999999999999988765432 123333221110 000000 0000 011111 11223445555
Q ss_pred HhCCCeEEEEEeCCCCcccchhhcCCCCCCCCCeEEEEEeccccc
Q 007268 250 LKKEERILVILDNIWENLDLLDVGIPHGDDHKGCKVLFTARSEEV 294 (610)
Q Consensus 250 L~~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 294 (610)
|.. .+=+|++|...+.+....+... ...|..|++||.....
T Consensus 95 L~~-~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 95 LRE-DPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHH-CCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred Hhh-CCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcchH
Confidence 554 5668888988654433222211 1235568888876543
No 291
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.17 E-value=0.091 Score=48.44 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.+.|.|.|++|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998764
No 292
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.16 E-value=0.1 Score=50.66 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 293
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.14 E-value=0.38 Score=51.76 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=28.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVS 214 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs 214 (610)
...+++|.|.+|+|||||++.++...... -..++++...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEe
Confidence 34689999999999999999998776532 1234555443
No 294
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.10 E-value=0.14 Score=44.85 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+.|+|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998653
No 295
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.09 E-value=0.083 Score=49.40 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
..+++|+|+.|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999876
No 296
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.09 E-value=0.13 Score=45.60 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999753
No 297
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.05 E-value=0.27 Score=46.77 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=31.4
Q ss_pred EEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChH
Q 007268 178 LLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVR 220 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 220 (610)
|+|.|-||+||||+|..++....... ..++-|+.....+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChH
Confidence 66699999999999999999887642 457777776555443
No 298
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.03 E-value=0.11 Score=50.75 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...++.|+|++|+|||||+..++....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 346999999999999999999987554
No 299
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.03 E-value=0.37 Score=44.48 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=33.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHH
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIAD 228 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (610)
.|+|-|.-|+||||.++.+++....+. ..+++..-+......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g--~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG--KKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCCcHHHHHHHHhh
Confidence 478899999999999999999887652 23444443434444555555543
No 300
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=90.96 E-value=0.92 Score=43.05 Aligned_cols=39 Identities=21% Similarity=0.044 Sum_probs=27.2
Q ss_pred ccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 158 SRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 158 GR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
-|....+.+..++.. + -+.|+|+.|.|||.+|..+....
T Consensus 94 l~~~Q~~ai~~~~~~-~--~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 94 LRDYQEKALERWLVD-K--RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCHHHHHHHHHHTTT-S--EEEEEESSSTTHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHhC-C--CEEEEeCCCCCHHHHHHHHHHHc
Confidence 344444445455533 2 37889999999999999888765
No 301
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.96 E-value=0.12 Score=47.60 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
-.|+|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 302
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.93 E-value=0.13 Score=50.06 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
...+++|+|+.|+|||||.+.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999875
No 303
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.92 E-value=0.15 Score=52.38 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=22.6
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998754
No 304
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.90 E-value=0.12 Score=49.56 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||.+.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987653
No 305
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.86 E-value=0.12 Score=50.34 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||.+.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44689999999999999999987654
No 306
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.86 E-value=0.12 Score=49.74 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
..+++|+|+.|+|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 307
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.85 E-value=0.25 Score=53.39 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=31.6
Q ss_pred cccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 157 ESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 157 vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
+.+.+....+..... -.+..+++|+|+.|+|||||++.++.....
T Consensus 349 f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 349 YSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp TSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 344444444444431 124578999999999999999999988753
No 308
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.85 E-value=0.36 Score=47.03 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=35.2
Q ss_pred HHHHHHHHHhc----CCCceEEEEEec-CCchHHHHHHHHHHHhccCCCCCeEEEEEeC
Q 007268 161 SILNEIMDALK----NPNVNMLLIYGM-GGIGKTTLAKKVARKAESDKLFDQVVLSEVS 214 (610)
Q Consensus 161 ~~~~~L~~~L~----~~~~~vv~I~G~-gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs 214 (610)
+.+..|...|. +.+.++|.|+|. ||+||||+|..++...... -..++.|+..
T Consensus 64 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~--G~rVLLID~D 120 (271)
T 3bfv_A 64 EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQA--GYKTLIVDGD 120 (271)
T ss_dssp HHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred HHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhC--CCeEEEEeCC
Confidence 34445544443 355689999875 8999999999998877643 2345666654
No 309
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.83 E-value=0.1 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..+++|+|+.|+|||||++.+..-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999987643
No 310
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.83 E-value=0.077 Score=58.10 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=31.9
Q ss_pred CccccHHHHHHHHHHhcCCCce-----------EEEEEecCCchHHHHHHHHHHHh
Q 007268 155 AFESRASILNEIMDALKNPNVN-----------MLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 155 ~~vGR~~~~~~L~~~L~~~~~~-----------vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.++|.+.....+.-.+..+..+ -|.++|++|+|||+||+.+++..
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 4667776665555444433212 58999999999999999988654
No 311
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.79 E-value=1 Score=48.00 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=58.2
Q ss_pred HHHHHhcC-CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC-hHHHHHHHHH----hhCC------
Q 007268 165 EIMDALKN-PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD-VRKIQGEIAD----KLGL------ 232 (610)
Q Consensus 165 ~L~~~L~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~----~l~~------ 232 (610)
+.++.|.. .+...++|.|..|+|||+|+.++++... -+.++++-+++..+ ..++++++-+ .++.
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rt 291 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERT 291 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGE
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHHhcccccccccccce
Confidence 34555542 3446899999999999999999887633 45788888887664 4455555422 1110
Q ss_pred ----CCCCCChhHH------HHHHHHHHh-CCCeEEEEEeCCC
Q 007268 233 ----KFDVESESGR------ARILYDRLK-KEERILVILDNIW 264 (610)
Q Consensus 233 ----~~~~~~~~~~------~~~l~~~L~-~~kr~LLVLDdv~ 264 (610)
.....+.... .-.+.+++. +++.+||++||+.
T Consensus 292 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~Dslt 334 (588)
T 3mfy_A 292 VLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTS 334 (588)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTT
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchH
Confidence 1111121111 122344443 4799999999995
No 312
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.74 E-value=0.31 Score=44.45 Aligned_cols=26 Identities=23% Similarity=0.070 Sum_probs=22.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.++.|+|+.|+||||++..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999888777644
No 313
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.72 E-value=0.14 Score=52.42 Aligned_cols=27 Identities=33% Similarity=0.332 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+...+++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455799999999999999999999754
No 314
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.69 E-value=0.14 Score=44.85 Aligned_cols=23 Identities=30% Similarity=0.681 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998764
No 315
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.69 E-value=0.37 Score=47.71 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=30.7
Q ss_pred CCCceEEEEEec-CCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 172 NPNVNMLLIYGM-GGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 172 ~~~~~vv~I~G~-gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
+.+.++|.|+|. ||+||||+|..++...... -..++.|+...
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~--G~rVLLID~D~ 143 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAVIAQS--DQKVLFIDADL 143 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHHHHhC--CCcEEEEECCC
Confidence 456689999986 8999999999998877643 23455565543
No 316
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.65 E-value=0.19 Score=45.18 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=25.3
Q ss_pred HHHHHHhcC-CCceEEEEEecCCchHHHHHHHHHH
Q 007268 164 NEIMDALKN-PNVNMLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 164 ~~L~~~L~~-~~~~vv~I~G~gGiGKTtLA~~v~~ 197 (610)
.++.+.+.. .....|+|+|.+|+|||||...+..
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 334444444 4567889999999999999988764
No 317
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.63 E-value=0.12 Score=46.90 Aligned_cols=21 Identities=43% Similarity=0.648 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHHH
Q 007268 177 MLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~ 197 (610)
-|+|+|.+|+|||||+..+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999876
No 318
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.63 E-value=0.26 Score=44.53 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHH
Q 007268 164 NEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 164 ~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
..+.+ +...+...|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33455678899999999999999999854
No 319
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.61 E-value=0.11 Score=49.65 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999987654
No 320
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.61 E-value=0.13 Score=50.01 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||.+.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999997653
No 321
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.59 E-value=0.11 Score=50.53 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=22.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+++|+|+.|+|||||++.++.-..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 346899999999999999999886543
No 322
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.56 E-value=0.13 Score=49.81 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 323
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.55 E-value=0.11 Score=50.18 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999987654
No 324
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.54 E-value=0.12 Score=49.17 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=23.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+++|+|+.|+|||||.+.++.-..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 346899999999999999999986543
No 325
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.48 E-value=0.13 Score=50.22 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987654
No 326
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.45 E-value=0.87 Score=48.65 Aligned_cols=95 Identities=16% Similarity=0.232 Sum_probs=57.4
Q ss_pred HHHHhc-CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHHHHH----hhCCC------
Q 007268 166 IMDALK-NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGEIAD----KLGLK------ 233 (610)
Q Consensus 166 L~~~L~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~----~l~~~------ 233 (610)
.++.|. =.+...++|.|..|+|||+|+.++++... -+.++++-+++.. ...++++++-+ .++..
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtv 297 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTV 297 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEE
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceE
Confidence 455554 23456899999999999999999988743 3577888777653 34445444322 11210
Q ss_pred ----CCCCChhHH------HHHHHHHHh-CCCeEEEEEeCCC
Q 007268 234 ----FDVESESGR------ARILYDRLK-KEERILVILDNIW 264 (610)
Q Consensus 234 ----~~~~~~~~~------~~~l~~~L~-~~kr~LLVLDdv~ 264 (610)
....+.... .-.+.+++. .++.+||++|++.
T Consensus 298 vV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 298 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 011111111 123444554 4789999999984
No 327
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.44 E-value=0.12 Score=49.73 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..+++|+|+.|+|||||.+.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987654
No 328
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.44 E-value=0.28 Score=45.13 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=31.8
Q ss_pred eEEEEE-ecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChH
Q 007268 176 NMLLIY-GMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVR 220 (610)
Q Consensus 176 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 220 (610)
++|+|+ +-||+||||+|..++...... -..++.++.....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~--g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS--GYNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEECCCCCCHH
Confidence 577777 789999999999999887754 2357777776554443
No 329
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.37 E-value=0.1 Score=48.98 Aligned_cols=25 Identities=40% Similarity=0.487 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..+++|+|+.|+|||||.+.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987654
No 330
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.32 E-value=0.15 Score=44.89 Aligned_cols=25 Identities=16% Similarity=0.485 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||+..+....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998753
No 331
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.24 E-value=0.23 Score=44.84 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.1
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHH
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
.....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998754
No 332
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.22 E-value=0.14 Score=49.81 Aligned_cols=26 Identities=38% Similarity=0.418 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987653
No 333
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.18 E-value=0.18 Score=45.65 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999864
No 334
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.14 E-value=0.17 Score=49.41 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=21.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHhc
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.++|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987654
No 335
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.09 E-value=0.44 Score=50.29 Aligned_cols=99 Identities=17% Similarity=0.231 Sum_probs=57.3
Q ss_pred HHHHhc-CCCceEEEEEecCCchHHHHHH-HHHHHhcc----CCCCC-eEEEEEeCCCC-ChHHHHHHHHHhhCCC----
Q 007268 166 IMDALK-NPNVNMLLIYGMGGIGKTTLAK-KVARKAES----DKLFD-QVVLSEVSESR-DVRKIQGEIADKLGLK---- 233 (610)
Q Consensus 166 L~~~L~-~~~~~vv~I~G~gGiGKTtLA~-~v~~~~~~----~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~---- 233 (610)
.++.|. =.+...++|.|.+|+|||+||. .+.+.... .++.+ .++++-+++.. ...++.+++...=...
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 444444 2344578999999999999954 55555542 12234 46777777655 4556666665432111
Q ss_pred ---CCCCChhHH------HHHHHHHHh-CCCeEEEEEeCCC
Q 007268 234 ---FDVESESGR------ARILYDRLK-KEERILVILDNIW 264 (610)
Q Consensus 234 ---~~~~~~~~~------~~~l~~~L~-~~kr~LLVLDdv~ 264 (610)
...++.... ...+.+++. +++..||++||+-
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 111111111 223444454 4799999999984
No 336
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.08 E-value=0.37 Score=48.33 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=33.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRK 221 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (610)
..++...|-||+||||+|..++...... -..+.-|+.....++..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D~~~~l~~ 58 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS--GKKTLVISTDPAHSLSD 58 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEECCSSCCHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEeCCCCcCHHH
Confidence 3577778999999999999998887654 33566777666555443
No 337
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.05 E-value=0.38 Score=50.72 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=55.6
Q ss_pred HHHHhcC-CCceEEEEEecCCchHHHHHH-HHHHHhccCCCCC-eEEEEEeCCCC-ChHHHHHHHHHhhCCC-------C
Q 007268 166 IMDALKN-PNVNMLLIYGMGGIGKTTLAK-KVARKAESDKLFD-QVVLSEVSESR-DVRKIQGEIADKLGLK-------F 234 (610)
Q Consensus 166 L~~~L~~-~~~~vv~I~G~gGiGKTtLA~-~v~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~ 234 (610)
.++.|.. .+...++|.|.+|+|||+||. .+.+... .+ .++++-+++.. ...++.+++...=... .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 4444441 234578999999999999965 5555442 45 35777777654 4556666665421111 1
Q ss_pred CCCChhHH------HHHHHHHHh-CCCeEEEEEeCCC
Q 007268 235 DVESESGR------ARILYDRLK-KEERILVILDNIW 264 (610)
Q Consensus 235 ~~~~~~~~------~~~l~~~L~-~~kr~LLVLDdv~ 264 (610)
..++.... ...+.+++. +++..||++||+-
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 11121111 223444554 4799999999984
No 338
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.03 E-value=0.68 Score=48.72 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=56.6
Q ss_pred HHHHhc-CCCceEEEEEecCCchHHHHHH-HHHHHhccCCCCC-eEEEEEeCCCC-ChHHHHHHHHHhhCCC-------C
Q 007268 166 IMDALK-NPNVNMLLIYGMGGIGKTTLAK-KVARKAESDKLFD-QVVLSEVSESR-DVRKIQGEIADKLGLK-------F 234 (610)
Q Consensus 166 L~~~L~-~~~~~vv~I~G~gGiGKTtLA~-~v~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~ 234 (610)
.++.|. =.+...++|.|.+|+|||+||. .+.+... .+ .++++-+++.. ...++.+++...=... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 455554 2344578999999999999965 5555542 45 35777777654 4556666666532222 1
Q ss_pred CCCChhHH------HHHHHHHHh-CCCeEEEEEeCCC
Q 007268 235 DVESESGR------ARILYDRLK-KEERILVILDNIW 264 (610)
Q Consensus 235 ~~~~~~~~------~~~l~~~L~-~~kr~LLVLDdv~ 264 (610)
..++.... ...+.+++. +++..||++||+-
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 11221111 123445554 4799999999984
No 339
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.99 E-value=0.14 Score=49.36 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+++|+|+.|+|||||.+.++.-..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45899999999999999999876543
No 340
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=89.93 E-value=0.51 Score=47.90 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=34.2
Q ss_pred CCCceEEEEEecCCchHHHHHHHHHHHhc--cCCCCCeEEEEEeCCCCChHH
Q 007268 172 NPNVNMLLIYGMGGIGKTTLAKKVARKAE--SDKLFDQVVLSEVSESRDVRK 221 (610)
Q Consensus 172 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~~~f~~~~wv~vs~~~~~~~ 221 (610)
.+...++...|-||+||||+|..++.... .. -..+.-|+.....++..
T Consensus 15 ~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~--G~rVLLvD~D~~~~l~~ 64 (354)
T 2woj_A 15 STTHKWIFVGGKGGVGKTTSSCSIAIQMALSQP--NKQFLLISTDPAHNLSD 64 (354)
T ss_dssp CSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCCHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCCHHH
Confidence 34456777789999999999999988876 43 23567777665555443
No 341
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.91 E-value=0.19 Score=44.92 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHH
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
.+...|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568899999999999999998764
No 342
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.90 E-value=0.2 Score=53.82 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=24.8
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
....+|.++|++|+||||+|+.++.....
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34578999999999999999999887653
No 343
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.89 E-value=0.2 Score=46.62 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.....|.|+|.+|+|||||+..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999998764
No 344
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.87 E-value=0.17 Score=45.88 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=21.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
-.|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 345
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.87 E-value=0.19 Score=44.22 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
-|+|+|.+|+|||||...+....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998654
No 346
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.86 E-value=0.13 Score=48.90 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
+..+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998765
No 347
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.86 E-value=0.14 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..+++|+|+.|+|||||.+.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999987654
No 348
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=89.82 E-value=0.34 Score=52.63 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=25.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.+..+|.|.|++|+||||+|+.+......
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 34578999999999999999999988653
No 349
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=89.79 E-value=0.53 Score=46.25 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=35.5
Q ss_pred HHHHHHHHHhc----CCCceEEEEEe-cCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 161 SILNEIMDALK----NPNVNMLLIYG-MGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 161 ~~~~~L~~~L~----~~~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
+.+..|...|. +.+.++|+|+| -||+||||+|..++...... -..++.|++.-
T Consensus 74 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~--G~rVLLID~D~ 131 (286)
T 3la6_A 74 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQT--NKRVLLIDCDM 131 (286)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTT--TCCEEEEECCT
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhC--CCCEEEEeccC
Confidence 33444444332 45668888886 58999999999998887653 23566666654
No 350
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.78 E-value=0.14 Score=50.13 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+++|+|+.|+|||||.+.++.-..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 346899999999999999999876543
No 351
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.78 E-value=0.18 Score=44.30 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=21.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.-|+|+|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999998754
No 352
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.76 E-value=0.34 Score=49.12 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=23.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+|+|+|.+|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 467999999999999999999987654
No 353
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.75 E-value=0.16 Score=50.78 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+.++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998764
No 354
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.70 E-value=0.35 Score=49.57 Aligned_cols=61 Identities=16% Similarity=0.317 Sum_probs=41.8
Q ss_pred ccccHHHHHHHHHHhc------------CCCceEEEEEe-cCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 156 FESRASILNEIMDALK------------NPNVNMLLIYG-MGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 156 ~vGR~~~~~~L~~~L~------------~~~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
+..-+..+.++.+... ..+.++|+|+| -||+||||+|..++...... -..++.+++....+
T Consensus 112 yq~~~~i~~ei~~~~~e~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~--g~rVlliD~D~~~~ 185 (373)
T 3fkq_A 112 YQRVDVIFKQILGVYSDMAANVATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANM--GKKVFYLNIEQCGT 185 (373)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCCCCCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEEECCTTCC
T ss_pred cCCHHHHHHHHHHHHhhcccccccccccCCCceEEEEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEECCCCCC
Confidence 3344666666665541 24578898885 99999999999998877653 23577788774333
No 355
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.70 E-value=1.3 Score=46.46 Aligned_cols=95 Identities=17% Similarity=0.222 Sum_probs=55.1
Q ss_pred HHHHhc-CCCceEEEEEecCCchHHHHHH-HHHHHhccCCCCC-eEEEEEeCCCC-ChHHHHHHHHHhhCCC-------C
Q 007268 166 IMDALK-NPNVNMLLIYGMGGIGKTTLAK-KVARKAESDKLFD-QVVLSEVSESR-DVRKIQGEIADKLGLK-------F 234 (610)
Q Consensus 166 L~~~L~-~~~~~vv~I~G~gGiGKTtLA~-~v~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~ 234 (610)
.++.|. =.+...++|.|..|+|||+||. .+.+. . ..+ .++++-+++.. ...++.+++...=... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~-~---~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQ-R---DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTT-S---SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhh-c---cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 344444 2344578999999999999974 55553 2 233 46788888665 4556666655432221 1
Q ss_pred CCCChhHH------HHHHHHHHh-CCCeEEEEEeCCC
Q 007268 235 DVESESGR------ARILYDRLK-KEERILVILDNIW 264 (610)
Q Consensus 235 ~~~~~~~~------~~~l~~~L~-~~kr~LLVLDdv~ 264 (610)
..++.... ...+-+++. +++..||++||+-
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 11111111 123344443 4899999999984
No 356
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.69 E-value=0.12 Score=54.01 Aligned_cols=38 Identities=34% Similarity=0.395 Sum_probs=28.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeC
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVS 214 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs 214 (610)
+++|+|+|.+|+||||++..++.....+ -..+..++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~--G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR--GLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH--HCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecc
Confidence 4689999999999999999998876543 1234555443
No 357
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.68 E-value=0.18 Score=44.17 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=20.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999988654
No 358
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.64 E-value=0.19 Score=45.42 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||+..+....
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998753
No 359
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.62 E-value=0.15 Score=50.69 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45689999999999999999987654
No 360
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.60 E-value=0.19 Score=44.21 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
-|+|+|.+|+|||||...+....
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
No 361
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.58 E-value=0.29 Score=44.92 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHH
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~ 197 (610)
.+...|+|+|.+|+|||||...+..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445689999999999999998864
No 362
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.54 E-value=0.18 Score=47.19 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+|+|.|+.|+||||+++.+.....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999987653
No 363
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.49 E-value=0.19 Score=44.36 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998653
No 364
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.49 E-value=0.23 Score=46.06 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=23.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
.+|+|.|+.|+||||+++.++.....
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 58999999999999999999998763
No 365
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.48 E-value=0.45 Score=44.22 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=31.9
Q ss_pred EEEE-EecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHH
Q 007268 177 MLLI-YGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKI 222 (610)
Q Consensus 177 vv~I-~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~ 222 (610)
+|+| .+-||+||||+|..++...... - .+..++.....+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~--g-~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQ--G-ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTT--S-CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhc--C-CEEEEECCCCCCHHHH
Confidence 4555 4789999999999999888765 2 6777887766544433
No 366
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.45 E-value=0.2 Score=44.19 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 007268 177 MLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
-|+|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 367
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.43 E-value=0.22 Score=45.04 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=21.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+.+|+|+.|+|||||+..++.-..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4889999999999999999887543
No 368
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.39 E-value=0.18 Score=44.35 Aligned_cols=21 Identities=33% Similarity=0.630 Sum_probs=18.6
Q ss_pred EEEEEecCCchHHHHHHHHHH
Q 007268 177 MLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~ 197 (610)
-|+|+|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998853
No 369
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=89.38 E-value=0.47 Score=47.66 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=32.2
Q ss_pred CCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 172 NPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 172 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
++..+++.+.|-||+||||+|..++...... -..+.-++.....
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~--G~rVllvD~D~~~ 59 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKV--RSSVLLISTDPAH 59 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTS--SSCEEEEECCTTC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCeEEEEECCCCc
Confidence 3445677788999999999999999887754 2346666665443
No 370
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.37 E-value=0.62 Score=43.61 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=24.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
...|.|.|+.|+||||+++.+.+....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999998764
No 371
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.36 E-value=0.37 Score=45.56 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=21.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
+...|+|.|+.|+||||+++.+++....
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999988764
No 372
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.36 E-value=0.24 Score=44.00 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=20.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
.--|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998754
No 373
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.35 E-value=0.2 Score=45.49 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||+..+....
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999887754
No 374
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.34 E-value=0.2 Score=44.92 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHHHH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999865
No 375
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.32 E-value=0.2 Score=44.16 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=21.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999998764
No 376
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.28 E-value=0.21 Score=44.02 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=20.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 458899999999999999998653
No 377
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.28 E-value=0.19 Score=44.34 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.7
Q ss_pred EEEEEecCCchHHHHHHHHHH
Q 007268 177 MLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~ 197 (610)
-|+|+|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999863
No 378
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.26 E-value=0.25 Score=51.27 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
...+++|+|..|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999999999874
No 379
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.20 E-value=0.27 Score=43.81 Aligned_cols=26 Identities=27% Similarity=0.545 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...-|+|+|.+|+|||||...+....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34578999999999999999998763
No 380
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.19 E-value=0.25 Score=44.89 Aligned_cols=25 Identities=12% Similarity=0.391 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
+...|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998764
No 381
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.19 E-value=0.11 Score=50.43 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=23.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+...|+|.|..|+||||+|+.+....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 55799999999999999999988764
No 382
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.18 E-value=0.22 Score=50.49 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|.|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 383
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.16 E-value=0.31 Score=48.34 Aligned_cols=33 Identities=21% Similarity=0.521 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 163 LNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 163 ~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
+++|.+.+. ..+++|+|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 455666653 3589999999999999999998 54
No 384
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.11 E-value=0.21 Score=44.46 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998653
No 385
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.08 E-value=0.2 Score=49.39 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||.+.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999997654
No 386
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.03 E-value=0.21 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.684 Sum_probs=20.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 387
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.02 E-value=0.18 Score=45.10 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||...+....
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 458899999999999999998753
No 388
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.01 E-value=0.22 Score=45.35 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=20.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
+...|+|+|.+|+|||||...+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999864
No 389
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.00 E-value=0.23 Score=45.44 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
--|+|+|.+|+|||||...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998753
No 390
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.98 E-value=0.22 Score=45.26 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=21.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..--|+|+|.+|+|||||+..+....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 34568899999999999999988754
No 391
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.95 E-value=0.22 Score=43.80 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=20.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998753
No 392
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.89 E-value=0.18 Score=48.87 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..+++|+|+.|+|||||.+.++.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999987543
No 393
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.89 E-value=0.27 Score=43.91 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=22.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
....|+|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34578999999999999999988754
No 394
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.88 E-value=0.69 Score=42.90 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhc
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+.|+|-|..|+||||+++.+++...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999999885
No 395
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=88.87 E-value=3.6 Score=43.22 Aligned_cols=88 Identities=13% Similarity=0.229 Sum_probs=55.8
Q ss_pred chHHHHHHHHHHHHHHHHHhHhhHHHHhhccccccccCcchhhhhhHHHHHHHHHHHHHHHHhcCCccccccccCCCccc
Q 007268 67 IEENVRSWLEAANKVIEEADKFTEDEAAANKRCFKELCPNLKTHRRLSKEAERQKEAVVKVLDARRFDRISYRTAPEDIR 146 (610)
Q Consensus 67 ~~~~v~~Wl~~lr~layd~ed~ld~~~~~~~~~~~~~~~~~~~r~~ia~~i~~l~~rl~~i~~~~~~~~~~~~~~~~~~~ 146 (610)
....+..|..++.++.-.+|-.+|--. .. ....+..+..++.++..+++++.....
T Consensus 161 ~~~~~~~~r~~l~~~~a~iEa~iDf~e--d~--------~~~~~~~~~~~i~~l~~~l~~~~~~~~-------------- 216 (462)
T 3geh_A 161 LAHPIRQLRANCLDILAEIEARIDFEE--DL--------PPLDDEAIISDIENIAAEISQLLATKD-------------- 216 (462)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSS--SS--------CCCCTTTHHHHHHHHHHHHHHHTTTHH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc--cC--------ChhhHHHHHHHHHHHHHHHHHHHHHhh--------------
Confidence 356788899999888888887776211 10 111234466677777777766632200
Q ss_pred ccCCCCCcCccccHHHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 147 LIPNKDYEAFESRASILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 147 ~~~~~~~~~~vGR~~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..+... ++. .|+|+|.+|+|||||...+....
T Consensus 217 ----------------~~~~~r----~~~-kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 217 ----------------KGELLR----TGL-KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp ----------------HHHHHH----HCE-EEEEEECTTSSHHHHHHHHHHHH
T ss_pred ----------------hhhhhc----CCC-EEEEEcCCCCCHHHHHHHHhCCC
Confidence 001111 133 48999999999999999998764
No 396
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=88.86 E-value=0.52 Score=47.73 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
+...++.+.|-||+||||+|..++...... -..++-|+....
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D~~ 65 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEK--GLKVVIVSTDPA 65 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHS--SCCEEEEECCTT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence 344566777999999999999998887654 234666665543
No 397
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=88.80 E-value=0.52 Score=48.06 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
+.++|+|+|.+|+|||||...+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 4678999999999999999998754
No 398
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=88.79 E-value=0.28 Score=44.40 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...|+|+|.+|+|||||...+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4578999999999999999998764
No 399
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.71 E-value=0.21 Score=44.62 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346889999999999999998754
No 400
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.68 E-value=0.26 Score=50.29 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...++|+|..|+|||||++.+.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988754
No 401
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.66 E-value=0.24 Score=44.11 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..-|+|+|.+|+|||||...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998764
No 402
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.64 E-value=0.25 Score=50.23 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||.+.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 44689999999999999999987654
No 403
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.63 E-value=0.29 Score=43.96 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
-+-|.|.|.+|+||||||..+..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 356889999999999999999875
No 404
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=88.60 E-value=0.57 Score=51.77 Aligned_cols=62 Identities=24% Similarity=0.266 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHH
Q 007268 161 SILNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIA 227 (610)
Q Consensus 161 ~~~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 227 (610)
...+.+...|... .+..|+||+|+|||+.+.++....-.+ ...+.++...+..+.++...+.
T Consensus 193 ~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 193 SQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHH
Confidence 3445566666433 478899999999998766665554332 2357777777666666666654
No 405
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=88.56 E-value=0.25 Score=44.44 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||...+....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998764
No 406
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.54 E-value=0.25 Score=43.93 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||...+....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998653
No 407
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.50 E-value=0.27 Score=44.71 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||...+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 468899999999999999998764
No 408
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.49 E-value=0.28 Score=52.01 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=24.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
...+|.++|++|+||||+++.+......
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999987653
No 409
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=88.49 E-value=0.24 Score=44.73 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHHHH
Q 007268 177 MLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998765
No 410
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.47 E-value=0.25 Score=44.52 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=21.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||...+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358899999999999999998754
No 411
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.42 E-value=0.25 Score=44.65 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||+..+....
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998753
No 412
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.42 E-value=0.32 Score=42.92 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...|+|+|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999997653
No 413
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.35 E-value=0.26 Score=44.30 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||...+....
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568999999999999999998763
No 414
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.31 E-value=0.25 Score=45.07 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.7
Q ss_pred CCCceEEEEEecCCchHHHHHHHHHH
Q 007268 172 NPNVNMLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 172 ~~~~~vv~I~G~gGiGKTtLA~~v~~ 197 (610)
..+.--|+|+|.+|+|||||+..+..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 34456799999999999999998864
No 415
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.27 E-value=0.25 Score=49.98 Aligned_cols=26 Identities=27% Similarity=0.338 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||.+.++.-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34689999999999999999998654
No 416
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=88.26 E-value=0.26 Score=44.22 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||...+....
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999988653
No 417
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=88.26 E-value=0.27 Score=44.04 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...|+|+|.+|+|||||...+....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998654
No 418
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.25 E-value=0.27 Score=49.93 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|.|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34689999999999999999998654
No 419
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=88.22 E-value=0.2 Score=46.02 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.0
Q ss_pred CceEEEEEecCCchHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVA 196 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~ 196 (610)
..--|+|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999885
No 420
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.21 E-value=0.26 Score=44.81 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998754
No 421
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.20 E-value=0.5 Score=47.69 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=24.9
Q ss_pred CCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 172 NPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 172 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+..+|+|+|.+|+|||||+..+.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999987654
No 422
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=88.20 E-value=0.55 Score=50.64 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=33.0
Q ss_pred cccHHHHHHHHHHhc--CCCceEEEEEecCCchHHHHHHHHHHHhcc
Q 007268 157 ESRASILNEIMDALK--NPNVNMLLIYGMGGIGKTTLAKKVARKAES 201 (610)
Q Consensus 157 vGR~~~~~~L~~~L~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 201 (610)
+.|.+....+.+... .....+|.+.|++|+||||+|+.+......
T Consensus 352 ~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 352 FTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 345555555666552 234578999999999999999999987654
No 423
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.19 E-value=0.25 Score=50.10 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|.|+.|+|||||.+.++.-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 424
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.18 E-value=0.26 Score=44.67 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=19.6
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 468899999999999997665543
No 425
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.16 E-value=0.28 Score=49.94 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 426
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.16 E-value=0.38 Score=49.28 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=24.1
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
....+++|+|+.|+|||||++.+.....
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4557999999999999999999987654
No 427
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=88.15 E-value=0.27 Score=44.01 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998865
No 428
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.15 E-value=0.28 Score=50.20 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
...+++|+|+.|+|||||.+.++.-..
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 346899999999999999999986543
No 429
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=88.14 E-value=0.57 Score=51.14 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=31.4
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
...+++.+.|.||+||||+|..++...... -..+..|+...
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~--G~rVLlvd~D~ 46 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQ--GKRVLLVSTDP 46 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHC--CCcEEEEECCC
Confidence 456788999999999999999998887654 23466666653
No 430
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.13 E-value=0.33 Score=44.32 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...--|+|+|.+|+|||||+..+....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 344578999999999999999998763
No 431
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.08 E-value=0.27 Score=44.09 Aligned_cols=25 Identities=24% Similarity=0.575 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..-|+|+|.+|+|||||+..+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3568899999999999999998754
No 432
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.06 E-value=0.3 Score=49.27 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=24.9
Q ss_pred CCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 172 NPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 172 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
-.+..+++|+|++|+|||||.+.+.....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 34568999999999999999999987654
No 433
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.04 E-value=0.37 Score=50.80 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=50.5
Q ss_pred CceEEEEEecCCchHHHHHH-HHHHHhccCCCCC-eEEEEEeCCCC-ChHHHHHHHHHhhCCC-------CCCCCh----
Q 007268 174 NVNMLLIYGMGGIGKTTLAK-KVARKAESDKLFD-QVVLSEVSESR-DVRKIQGEIADKLGLK-------FDVESE---- 239 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~-~v~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~---- 239 (610)
+...++|.|.+|+|||+||. .+.+... .+ .++++-+++.. ...++.+++...=... ...++.
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 34568999999999999965 5555432 44 45777777654 3445555554321111 011111
Q ss_pred --hHHHHHHHHHHh-CCCeEEEEEeCCC
Q 007268 240 --SGRARILYDRLK-KEERILVILDNIW 264 (610)
Q Consensus 240 --~~~~~~l~~~L~-~~kr~LLVLDdv~ 264 (610)
......+.+++. +++..||++||+-
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 112223444443 4899999999974
No 434
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.03 E-value=0.27 Score=43.90 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||...+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998753
No 435
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.02 E-value=0.28 Score=45.27 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||+..+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568999999999999999988653
No 436
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.00 E-value=0.28 Score=45.40 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..--|+|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999998753
No 437
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.99 E-value=0.28 Score=43.80 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||...+....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998754
No 438
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.92 E-value=0.19 Score=46.39 Aligned_cols=26 Identities=12% Similarity=0.150 Sum_probs=21.6
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHH
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
.....|+|+|..|+|||||.+.+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999887643
No 439
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=87.88 E-value=0.29 Score=44.92 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...-|+|+|.+|+|||||+..+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 44678999999999999999998764
No 440
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=87.86 E-value=0.28 Score=44.96 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=22.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...-|+|+|.+|+|||||...+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578999999999999999988654
No 441
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.83 E-value=0.71 Score=47.95 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=27.4
Q ss_pred HHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 165 EIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 165 ~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+.+.+ .....+++|+|+.|+|||||.+.+.....
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 344443 34557999999999999999999988764
No 442
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=87.83 E-value=0.3 Score=49.90 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|.|+.|+|||||.+.++.-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34689999999999999999998654
No 443
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=87.83 E-value=0.26 Score=46.30 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHHH
Q 007268 177 MLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
-|+|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4788999999999999998764
No 444
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.80 E-value=0.26 Score=43.98 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=20.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
.--|+|+|.+|+|||||+..+...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998654
No 445
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=87.77 E-value=0.29 Score=44.99 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
....|+|+|.+|+|||||...+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34578999999999999999998764
No 446
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=87.74 E-value=0.3 Score=44.43 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||...+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998764
No 447
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.74 E-value=0.24 Score=50.32 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...+++|+|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 448
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=87.66 E-value=0.3 Score=44.28 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||...+....
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998754
No 449
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.64 E-value=0.29 Score=44.50 Aligned_cols=25 Identities=12% Similarity=0.408 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568899999999999999998764
No 450
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=87.63 E-value=0.34 Score=52.94 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
+..+|.|.|++|+||||+|+.+.....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998864
No 451
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=87.55 E-value=0.32 Score=45.02 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=21.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
....|+|+|.+|+|||||...+....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998764
No 452
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=87.53 E-value=0.29 Score=50.07 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..+++|+|+.|+|||||.+.++.-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4689999999999999999998654
No 453
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=87.52 E-value=0.31 Score=44.38 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||...+....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568899999999999999998764
No 454
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=87.47 E-value=0.48 Score=43.71 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
....+|+|+|++|+||+|+|..+.+..
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 345799999999999999999987755
No 455
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=87.45 E-value=0.29 Score=45.71 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~ 197 (610)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999998873
No 456
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.40 E-value=0.31 Score=44.08 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||...+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998764
No 457
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=87.38 E-value=0.35 Score=43.56 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.....|+|+|.+|+|||||...+....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999988654
No 458
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=87.33 E-value=1.4 Score=42.38 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=33.6
Q ss_pred CCceEEEE-EecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHH
Q 007268 173 PNVNMLLI-YGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRK 221 (610)
Q Consensus 173 ~~~~vv~I-~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (610)
...++|+| .|-||+||||+|..++.... + -..+..|++....+...
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~--g~~VlliD~D~~~~~~~ 71 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-K--NNKVLLIDMDTQASITS 71 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-T--TSCEEEEEECTTCHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-C--CCCEEEEECCCCCCHHH
Confidence 45678877 47899999999999998887 4 24677777775544433
No 459
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=87.31 E-value=0.32 Score=44.20 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||...+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998653
No 460
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=87.21 E-value=0.33 Score=43.97 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=22.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...-|+|+|.+|+|||||...+....
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 34578999999999999999988653
No 461
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.21 E-value=0.46 Score=47.07 Aligned_cols=35 Identities=23% Similarity=0.473 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 163 LNEIMDALKNPNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 163 ~~~L~~~L~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
++++.+++. ..+++|+|++|+|||||.+.+.....
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhccccc
Confidence 455666653 35899999999999999999876543
No 462
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=87.18 E-value=0.5 Score=44.82 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=30.2
Q ss_pred CceEEEEE-ecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 174 NVNMLLIY-GMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 174 ~~~vv~I~-G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
..++|+|+ +-||+||||+|..++....... =..++.|+....
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEP-DIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTST-TCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCc-CCCEEEEECCCC
Confidence 45778777 5689999999999998877541 225666766543
No 463
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.14 E-value=0.21 Score=56.72 Aligned_cols=153 Identities=14% Similarity=0.219 Sum_probs=83.2
Q ss_pred CCcCccccHHHHHHHHHHhcC-------------CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCC
Q 007268 152 DYEAFESRASILNEIMDALKN-------------PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRD 218 (610)
Q Consensus 152 ~~~~~vGR~~~~~~L~~~L~~-------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~ 218 (610)
....+.|-++..+.|.+.+.- ...+.+.++|++|+|||+||+.++...... | +.++.+.-.+
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~--~---i~v~~~~l~~ 549 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN--F---ISIKGPELLT 549 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC--C---CCCCCSSSTT
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC--E---EEEechHhhh
Confidence 345567777777777766541 234568899999999999999999987532 2 1111111100
Q ss_pred hHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHhCCCeEEEEEeCCCCcc----------------cchhhcCCCCC--CC
Q 007268 219 VRKIQGEIADKLGLKFDVESESGRARILYDRLKKEERILVILDNIWENL----------------DLLDVGIPHGD--DH 280 (610)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LLVLDdv~~~~----------------~~~~l~~~l~~--~~ 280 (610)
.... .....+..+.+......+++|+||+++... ....+...+.. ..
T Consensus 550 --------------~~~g-~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~ 614 (806)
T 1ypw_A 550 --------------MWFG-ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp --------------CCTT-TSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----
T ss_pred --------------hhcC-ccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc
Confidence 0001 112233444444433356788899875310 11223333221 12
Q ss_pred CCeEEEEEecccccc-cccCC---ccceecCCCCCHHHHHHHHHHHhC
Q 007268 281 KGCKVLFTARSEEVL-SGEME---SRKNFPVGFLKEEEAWSLFKKMAG 324 (610)
Q Consensus 281 ~gs~IivTTR~~~va-~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~ 324 (610)
.+..||.||...... ..... -...+.+...+.++-.+++..++.
T Consensus 615 ~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp -CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhc
Confidence 234466666654322 11121 224677888888888888888764
No 464
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=87.12 E-value=0.49 Score=45.46 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=31.1
Q ss_pred CCceEEEEE-ecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCC
Q 007268 173 PNVNMLLIY-GMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSES 216 (610)
Q Consensus 173 ~~~~vv~I~-G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~ 216 (610)
.+.++|+|+ +-||+||||+|..++...... -..++.|+....
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~ 46 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARL--GKRVLLVDLDPQ 46 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHT--TCCEEEEECCTT
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHC--CCCEEEEECCCC
Confidence 345788887 688999999999999887654 235666776644
No 465
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=87.10 E-value=0.33 Score=44.03 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||...+....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998754
No 466
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=87.09 E-value=0.34 Score=44.54 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..-|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 467
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=87.06 E-value=0.29 Score=48.55 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=18.6
Q ss_pred EEEEEecCCchHHHHHHHHHH
Q 007268 177 MLLIYGMGGIGKTTLAKKVAR 197 (610)
Q Consensus 177 vv~I~G~gGiGKTtLA~~v~~ 197 (610)
-|+|+|..|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999764
No 468
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=86.94 E-value=0.37 Score=49.55 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
...+++|+|+.|+|||||.+.++.-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4468999999999999999999864
No 469
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.94 E-value=0.48 Score=43.05 Aligned_cols=26 Identities=27% Similarity=0.663 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..--|+|+|.+|+|||||...+....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCC
Confidence 34568999999999999999998743
No 470
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=86.92 E-value=0.34 Score=44.36 Aligned_cols=26 Identities=12% Similarity=0.408 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
...-|+|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 45678999999999999999997653
No 471
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=86.88 E-value=0.35 Score=43.79 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||...+....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 472
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=86.86 E-value=0.5 Score=48.27 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=31.6
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChH
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVR 220 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 220 (610)
+++.+.|-||+||||+|..++...... -..+..|+. ...++.
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~--g~~vllvd~-~~~~l~ 44 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQ--GKRVLLAGL-AEPVLP 44 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHT--TCCEEEEEC-SCSHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCeEEEeC-CCCChH
Confidence 578889999999999999998877654 235677777 554443
No 473
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=86.81 E-value=0.29 Score=44.76 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999999876653
No 474
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=86.80 E-value=0.41 Score=44.99 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
....|+|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998765
No 475
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=86.74 E-value=0.34 Score=44.42 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||+..+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999988654
No 476
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.72 E-value=0.37 Score=44.48 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..-|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999988653
No 477
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.71 E-value=0.37 Score=43.75 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||+..+....
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999998763
No 478
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=86.68 E-value=0.87 Score=43.86 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=26.9
Q ss_pred ceEEEEE-ecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCC
Q 007268 175 VNMLLIY-GMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSE 215 (610)
Q Consensus 175 ~~vv~I~-G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~ 215 (610)
.++|+|+ |-||+||||+|..++...... -..++.|+...
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~--G~~VlliD~D~ 57 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQ--GKKVGILDADF 57 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHT--TCCEEEEECCS
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 4566665 788999999999998877653 12355555543
No 479
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=86.68 E-value=0.74 Score=48.97 Aligned_cols=57 Identities=25% Similarity=0.233 Sum_probs=39.1
Q ss_pred HHHHHhcC-CCceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC-ChHHHHHH
Q 007268 165 EIMDALKN-PNVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR-DVRKIQGE 225 (610)
Q Consensus 165 ~L~~~L~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~ 225 (610)
+.++.|.. .+...++|.|..|+|||+|+.++++... -+.++++-+++.. ...+++.+
T Consensus 210 rvID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~ 268 (578)
T 3gqb_A 210 RILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSN----ADVVVYVGSGERGNEMTDVLVE 268 (578)
T ss_dssp HHHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHTT
T ss_pred hhhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHH
Confidence 34555542 2345789999999999999999988743 3577888777653 33444433
No 480
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=86.67 E-value=0.38 Score=43.74 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
....|+|+|.+|+|||||...+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998754
No 481
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=86.63 E-value=0.37 Score=44.50 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
.--|+|+|.+|+|||||+..+....
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999988653
No 482
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=86.61 E-value=0.5 Score=44.53 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=32.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCCChHHHHHHHHHhhCCC
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESRDVRKIQGEIADKLGLK 233 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (610)
...+|+|.|+.|+||||+|+.++...... ++ + .+++..++...+.+
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~-------~~------d-~~~~~~~a~~~g~~ 58 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIH-------FY------D-DDILKLASEKSAVG 58 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCE-------EE------C-HHHHHHHHHCC---
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCc-------EE------c-HHHHHHHHHHcCCC
Confidence 34699999999999999999999887532 11 3 45566666666554
No 483
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=86.61 E-value=0.33 Score=48.11 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
+...|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999864
No 484
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=86.54 E-value=0.4 Score=45.47 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999988653
No 485
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=86.52 E-value=0.29 Score=44.03 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
.-.|+|+|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999864
No 486
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=86.50 E-value=0.39 Score=44.16 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..--|+|+|.+|+|||||+..+....
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC
Confidence 34568999999999999999987653
No 487
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=86.45 E-value=0.37 Score=44.23 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=20.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
..--|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999998754
No 488
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=86.42 E-value=0.36 Score=44.15 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
.--|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998754
No 489
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=86.40 E-value=0.44 Score=48.25 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 173 PNVNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 173 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
.+..+++|+|..|+|||||.+.+.....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3446999999999999999999999865
No 490
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=86.37 E-value=0.38 Score=47.84 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 007268 174 NVNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 174 ~~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
....|+|+|.+|+|||||...+...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578999999999999999998765
No 491
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=86.35 E-value=0.4 Score=44.00 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..-|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3468899999999999999988754
No 492
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.31 E-value=0.33 Score=49.46 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhc
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKAE 200 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 200 (610)
..+++|+|+.|+|||||++.+.....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35899999999999999999987654
No 493
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=86.22 E-value=0.38 Score=44.71 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=20.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
.--|+|+|.+|+|||||...+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998754
No 494
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=86.17 E-value=0.45 Score=46.21 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998765
No 495
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=86.11 E-value=0.23 Score=44.58 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=10.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARK 198 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~ 198 (610)
.--|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999988754
No 496
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.08 E-value=0.4 Score=44.19 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 007268 175 VNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 175 ~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
..-|+|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3578999999999999999998653
No 497
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=86.02 E-value=0.41 Score=44.57 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 007268 176 NMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 176 ~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
--|+|+|.+|+|||||...+....
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998754
No 498
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=85.99 E-value=0.79 Score=44.91 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=27.3
Q ss_pred HHHHHHHhcC------CCceEEEEEecCCchHHHHHHHHHHHh
Q 007268 163 LNEIMDALKN------PNVNMLLIYGMGGIGKTTLAKKVARKA 199 (610)
Q Consensus 163 ~~~L~~~L~~------~~~~vv~I~G~gGiGKTtLA~~v~~~~ 199 (610)
++++.+.|.. .....|+|+|.+|+|||||...+....
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 4455555542 245689999999999999999998653
No 499
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=85.75 E-value=0.39 Score=43.53 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=24.6
Q ss_pred EEEEecCCchHHHHHHHHHHHhccCCCCCeEEEEEeCCCC
Q 007268 178 LLIYGMGGIGKTTLAKKVARKAESDKLFDQVVLSEVSESR 217 (610)
Q Consensus 178 v~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~vs~~~ 217 (610)
+.|+|.+|+|||++|.+++.. . ..++++.....+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~-----~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A-----PQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C-----SSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc-C-----CCeEEEecCCCC
Confidence 689999999999999998854 1 235566554443
No 500
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=85.66 E-value=1.3 Score=45.47 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=36.4
Q ss_pred HHHHHHHHhc-------CCCceEEEEE-ecCCchHHHHHHHHHHHhccC----CCCCeEEEEEeCCCC
Q 007268 162 ILNEIMDALK-------NPNVNMLLIY-GMGGIGKTTLAKKVARKAESD----KLFDQVVLSEVSESR 217 (610)
Q Consensus 162 ~~~~L~~~L~-------~~~~~vv~I~-G~gGiGKTtLA~~v~~~~~~~----~~f~~~~wv~vs~~~ 217 (610)
.+..+...+. ....++|+|+ |-||+||||+|..++...... ..-..++.|++....
T Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~ 155 (398)
T 3ez2_A 88 NIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS 155 (398)
T ss_dssp HHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC
T ss_pred HHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 4455555542 2346788777 889999999999998876531 012356777776543
Done!