BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007269
         (610 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1E8X|A Chain A, Structural Insights Into Phoshoinositide 3-Kinase
           Enzymatic Mechanism And Signalling
 pdb|1E90|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
           Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
           And Staurosporine
 pdb|1E7V|A Chain A, Structure Determinants Of Phosphoinositide 3-kinase
           Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
           And Staurosporine
 pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
           Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
           And Staurosporine
          Length = 961

 Score = 30.4 bits (67), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 16/102 (15%)

Query: 74  LNIDKRFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIA---DN-- 128
           L ID RF++ HG    + + +     +  +FN D +  A   N DK + MSI+   DN  
Sbjct: 326 LLIDHRFLLRHGEYVLHMWQLSGKGEDQGSFNADKLTSA--TNPDKENSMSISILLDNYC 383

Query: 129 ------RQRLVPLPD-DRLPGR--GQVLAYPEAVLLVNPVEP 161
                 + R  P P+ DR+      Q+    EA++  +P+ P
Sbjct: 384 HPIALPKHRPTPDPEGDRVRAEMPNQLRKQLEAIIATDPLNP 425


>pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
           Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
           And Staurosporine
          Length = 961

 Score = 30.4 bits (67), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 16/102 (15%)

Query: 74  LNIDKRFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIA---DN-- 128
           L ID RF++ HG    + + +     +  +FN D +  A   N DK + MSI+   DN  
Sbjct: 326 LLIDHRFLLRHGEYVLHMWQLSGKGEDQGSFNADKLTSA--TNPDKENSMSISILLDNYC 383

Query: 129 ------RQRLVPLPD-DRLPGR--GQVLAYPEAVLLVNPVEP 161
                 + R  P P+ DR+      Q+    EA++  +P+ P
Sbjct: 384 HPIALPKHRPTPDPEGDRVRAEMPNQLRKQLEAIIATDPLNP 425


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.140    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,096,407
Number of Sequences: 62578
Number of extensions: 947694
Number of successful extensions: 1674
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1672
Number of HSP's gapped (non-prelim): 6
length of query: 610
length of database: 14,973,337
effective HSP length: 105
effective length of query: 505
effective length of database: 8,402,647
effective search space: 4243336735
effective search space used: 4243336735
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)