BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007269
(610 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE
PE=1 SV=1
Length = 578
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 138/577 (23%), Positives = 225/577 (38%), Gaps = 99/577 (17%)
Query: 35 GTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFYTYAI 94
G ++ VI + +QV +++ ++ Q L ++ IM SG Y+Y +
Sbjct: 89 GGVNEFVPERLEVIKQTPDQVHLAY-------IDDQNGKLRLEYHLIMTRDVSGLYSYVV 141
Query: 95 FEHLGEWPAFNIDNIRMAFKLNKDKFH--FMSIADNRQRLVPLPDDRLPGRGQVLAYPEA 152
+ G P + +R ++ + + F SI RG L Y E
Sbjct: 142 AANTGSAP-VTVSELRNVYRFDATRLDTLFNSIR----------------RGTPLLYDEL 184
Query: 153 VLLVNPVEPEFK---GEVDDKYLYSCKSQDIRVHGWICADPPVGFWQITPSIESRSAGPL 209
L + ++ G V KY ++ ++ R W G W + S E S L
Sbjct: 185 EQLPKVQDETWRLPDGSVYSKYDFAGYQRESRY--WGVMGNGYGAWMVPASGEYYSGDAL 242
Query: 210 KQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSLSNEDDPLLLW 269
KQ L H L H+ D++ + G ++K++GP +Y+N ++ + L
Sbjct: 243 KQELLVHQDAIILNYLTGSHFGTPDMVAQPG----FEKLYGPWLLYINQGNDRE----LV 294
Query: 270 EDAKQQMIFEVQSWPYDFPASKDFPQSDQRGTLHGRLLVEDRYINMDYIAANGAYVGLAP 329
D ++ E SWPY + +P+ QR T+ GRL E + +
Sbjct: 295 ADVSRRAEHERASWPYRWLDDARYPR--QRATVSGRLRTE------------APHATVVL 340
Query: 330 PGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEG 389
+A ++ + GY F AR N DG F + ++ G Y L A+ G +EG
Sbjct: 341 NSSAENFDIQTTGYLFSARTNRDGRFSLSNVPPGEYRLSAYADGGTQIGLLAQQTVRVEG 400
Query: 390 SYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWE 449
+G + + P P W IG DR A EF D+ RQY
Sbjct: 401 KKTRLGQIDARQP--APLAWAIGQADRRADEF---------------RFGDKPRQY---- 439
Query: 450 RYAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDNQTYEGTTWQIKFELDNVNESAVYKL 509
R+ P DL + + +S RKDW++AQ + +W I F + Y L
Sbjct: 440 RWQTEVP-ADLTFEIGKSRERKDWYYAQT---------QPGSWHILFNTRTPEQP--YTL 487
Query: 510 RLALASAHVSVLQVRINDP----STEPPLFSTGQIGKENTIARHGIY-GLYWLFNVDVP- 563
+A+A+A + + + P L +T + + +I R + G Y ++ +P
Sbjct: 488 NIAIAAASNNGMTTPASSPQLAVKLNGQLLTTLKYDNDKSIYRGAMQSGRYHEAHIPLPA 547
Query: 564 GALFVKGNNNTIYLTQALSGSPFRGVMYDYIRLEGPP 600
GAL GN T+ L + VMYD I L P
Sbjct: 548 GALQQGGNRITLELLGGM-------VMYDAITLTETP 577
>sp|Q5AZ85|RGLB_EMENI Rhamnogalacturonate lyase B OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglB
PE=2 SV=2
Length = 660
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 131/568 (23%), Positives = 220/568 (38%), Gaps = 82/568 (14%)
Query: 80 FIMLHGSSGFYTYAIFEHLGEWPAF--NIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPD 137
+ + G +GF+ ++ + E F N+ +R F+ N D + ++ +D + PLP
Sbjct: 123 WFLRDGETGFHMFSRLAYYNETTPFLRNLQELRTLFRPNTDLWTHLTSSD--LQTAPLPS 180
Query: 138 DRLPGRGQVLAYPEAVLLVNPVEPEFK--GEVDDKYLYSCKSQDIRVHGWICADPPV--- 192
D V+ L P + ++ E KY +S +D VHG + AD
Sbjct: 181 DEAIAEQIVVQDATWRLNNTPDDAYYQQFSEYFTKYTFSNHWRDNDVHG-LYADGSTSDG 239
Query: 193 ---GFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVF 249
G W + + ++ GPL L G + + H G I + + + F
Sbjct: 240 TTYGAWLVMNTKDTYYGGPLHSDLTVD-GIIYNYIVSNHHGEGTPNI-----TNGFDRTF 293
Query: 250 GPIFIYLNSLSNEDDPLLLWEDAKQQMIFEVQSWPYDFPASK-----DFPQSDQRGTLHG 304
GP F N + L E + SW DF S + S QRG++ G
Sbjct: 294 GPQFYLFNGGGSSS----LEELRDEARSLASPSWNADFYDSIAKHVIGYVPSSQRGSVKG 349
Query: 305 RL-LVEDRYINMDYIAANGAYV--GLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIR 361
+ L ++ + + +G Y A P + +Q+WA + +G F ID +
Sbjct: 350 TIKLPKNAKSPIAVLTVDGHYFQDNSAVPSS----------HQYWADIDKNGRFSIDRVV 399
Query: 362 TGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEF 421
G Y L + G GD+ D I + I + +KP G +W +G PD+ + EF
Sbjct: 400 AGKYRLTVYADGIFGDFTRD-GIVVKARKSTSIKE-TWKPESAGTEIWRLGTPDKSSGEF 457
Query: 422 -YVPDPDPKYINKLYVNHTDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKDW---FFAQ 477
+ DP + H Y Y + +P + Y++ +SD D+ +A
Sbjct: 458 RHGAARDPT-----HPRHPPEYLIYWGAYDWQSDFPG-GIDYMIGESDPATDFNTVHWAV 511
Query: 478 VTRKKDNQTYEGTT---WQIKFELD----NVNESAVYKLRLALASAHVSVLQV-RINDPS 529
DN E T W+I+F+L + ++A ++LA A A V ++P
Sbjct: 512 FGPTPDNPVAESNTTHDWRIRFDLSAKQLHARKTATLTIQLAGAKAASGNTDVYNASEPY 571
Query: 530 TEPPLFS---------TGQIG---KENTIARHGIYGLYWLFNVDVPGALFVKGNNNTIYL 577
PL S T IG + I R + + P A ++K +N + L
Sbjct: 572 ANLPLRSYINEQEEPLTMVIGYDQSSSCIVRSAVSCYQVREKWEFP-ASWLKEGSNLLRL 630
Query: 578 TQALSGSPFRG--------VMYDYIRLE 597
+ +G+ + V YD +RLE
Sbjct: 631 SLPTNGTNYESAVLPTSVYVQYDALRLE 658
>sp|B8N5T6|RGLB_ASPFN Probable rhamnogalacturonate lyase B OS=Aspergillus flavus (strain
ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC
167) GN=rglB PE=3 SV=1
Length = 663
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 124/569 (21%), Positives = 212/569 (37%), Gaps = 82/569 (14%)
Query: 80 FIMLHGSSGFYTYAIFEHLGEWPAF--NIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPD 137
+ + G +G +T++ + E F N+ R F+ N + + ++ ++ + PLP
Sbjct: 124 WFLRDGETGLHTFSRLAYYNETTPFLRNLQEFRTLFRPNTELWTHLTSSE--AQTAPLPS 181
Query: 138 DRLPGRGQVLAYPEAVLLVNPVEPEFK--GEVDDKYLYSCKSQDIRVHGWICAD------ 189
V+ P + + E KY +S +D VHG + AD
Sbjct: 182 KEAIANEVVVQDATWRFNNTPNDAYYTQFSEYFTKYTFSNLWRDNSVHG-LYADGTNSNG 240
Query: 190 PPVGFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVF 249
G W + + ++ GPL L G L + H G I + + + F
Sbjct: 241 TTYGAWLVMNTKDTYYGGPLHSDLTVD-GIVYNYLVSNHHGEGTPNI-----TNGFDRTF 294
Query: 250 GPIFIYLNSLSNEDDPLLLWEDAKQQM-IFEVQSWPYDFPASK-----DFPQSDQRGTLH 303
GP + N L ED + + W DF S + S +RG++
Sbjct: 295 GPQYYLFNGGKGSKSSL---EDLRSEAETLADPGWNADFYDSIAKHVIGYAPSSKRGSVQ 351
Query: 304 GRL-LVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRT 362
G++ L + + + +G Y E +Q+WA DG F +DH++
Sbjct: 352 GQVKLPKGSTRPIAILTVDGQYFQ--------DNSVEASSHQYWAEMGQDGTFQLDHVKE 403
Query: 363 GNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFY 422
G Y L F G GD+ +D + + G + + ++ G +W +G PD+ + EF
Sbjct: 404 GKYRLTVFADGIFGDFVHD-GVEVQAGKVTKVQE-TWEQESAGVEVWRLGTPDKSSGEFL 461
Query: 423 VPD-PDPKYINKLYVNHTDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKD-----WFFA 476
D PDP + ++ + +G ++ + + +P+ + Y + SD D W
Sbjct: 462 HGDAPDPTHP----LHPPQHFIYWGAYD-WQQDFPN-GVNYTIGSSDPAVDFNTVHWSVY 515
Query: 477 QVTRKKDNQTYEGT-TWQIKFELD--NVNESAVYKLRLALASAHVS-------------- 519
T + Y+ T W I F LD + + L + LA A +
Sbjct: 516 GPTPANPDVEYDTTHDWTINFSLDKKQLQQRKTATLTIQLAGAKTAAGNTDVYNATEPYA 575
Query: 520 --VLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGN------ 571
L+ IN+ EP G + I R + ++ P GN
Sbjct: 576 NLALESYINE-QKEPLTLLVGFNQSSSCIVRSAVSCYQVRSRMEFPADWLNVGNNVLTLH 634
Query: 572 ---NNTIYLTQALSGSPFRGVMYDYIRLE 597
N T Y T L G+ + V YD +RLE
Sbjct: 635 LPRNATDYETAVLPGTVY--VQYDALRLE 661
>sp|A5ABH4|RGLB_ASPNC Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=rglB PE=3 SV=1
Length = 706
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 115/531 (21%), Positives = 190/531 (35%), Gaps = 73/531 (13%)
Query: 85 GSSGFYTYAIFEHLGEWPAF--NIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPDDRLPG 142
G +G +T++ + E + N+ R F+ N + + +S ++ + PLP +
Sbjct: 129 GETGLHTFSRLAYYNETTPYLRNLQEFRTLFRPNTELWTHLSSSE--VQTAPLPSKKAVE 186
Query: 143 RGQVLAYPEAVLLVNPVEPEFKGEVD--DKYLYSCKSQDIRVHGWICADPPV------GF 194
V+ P + + D KY +S +D VHG + AD G
Sbjct: 187 EEVVVQDATWTFNNTPTDEYYVQFADYFTKYTFSNAWRDNSVHG-MYADGSTSNGSTFGA 245
Query: 195 WQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFI 254
W + + ++ GPL L V S H+ + +G + + FGP +
Sbjct: 246 WLVMNTKDTYYGGPLHSDLT--VDGIVYNYLVSNHHGEGTPNITYG----FDRTFGPQYY 299
Query: 255 YLNSLSNEDDPLLLWEDAKQQMIFEVQSWPYDFPAS-----KDFPQSDQRGTLHGRL-LV 308
+ N + L E SW DF S + S QRG++ G++ L
Sbjct: 300 HFNG--GKGSTASLQELKSDAETLADPSWNVDFYDSIAKHVVGYTPSSQRGSVQGKIKLP 357
Query: 309 EDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLY 368
+ + + +G Y YQ+WA + G+F +DH++ G Y L
Sbjct: 358 KGATRPIAVLTVDGQYFQ--------DNSVNSSSYQYWAEIDDSGHFSVDHVKEGPYRLT 409
Query: 369 AFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEF---YVPD 425
+ G GD+ D + + G I + ++ G +W +G PD+ + EF D
Sbjct: 410 VYADGIFGDFVRD-GVQVKAGKKTTIQE-TWEAESAGTEIWRLGTPDKSSGEFRHGVARD 467
Query: 426 PDPKYINKLYVNHTDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKD-----WFFAQVTR 480
P + H Y Y + +PD + Y + SD D W T
Sbjct: 468 P-------THPLHPPEYLIYWGAYDWQSDFPD-GINYTIGTSDPATDLNTVHWSVFGPTP 519
Query: 481 KKDNQTYEGT-TWQIKFEL--DNVNESAVYKLRLALASAHVS----------------VL 521
Y+ T W I F L D++ E + L + LA A + L
Sbjct: 520 NDPRVEYDTTHDWTINFPLSEDDLAERSKATLTIQLAGAKAASGNTDVYNASEPYTNLAL 579
Query: 522 QVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGNN 572
+ IND EP G + I R + ++ P GNN
Sbjct: 580 ESYIND-QAEPLTLLIGFNQSSSCIVRSAVSCYQVRSRMEFPADWLKVGNN 629
>sp|Q0C7K7|RGLB_ASPTN Probable rhamnogalacturonate lyase B OS=Aspergillus terreus (strain
NIH 2624 / FGSC A1156) GN=rglB PE=3 SV=1
Length = 660
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 139/358 (38%), Gaps = 39/358 (10%)
Query: 80 FIMLHGSSGFYTYAIFEHLGEWPAF--NIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPD 137
+ + G +G + ++ + E F N+ R F+ N D + ++ ++ + PLP
Sbjct: 123 WFLRDGETGLHMFSRLAYYNETTPFLRNLQEFRTLFRPNTDLWTHLTSSE--LQTAPLPS 180
Query: 138 DRLPGRGQVLAYPEAVLLVNPVEPEFK--GEVDDKYLYSCKSQDIRVHGWICADPPV--- 192
D G+ V+ P + + E KY +S +D VHG + AD
Sbjct: 181 DEAVGKQVVVQDATWRFNNTPNDAYYTQFSEYFTKYTFSNAWRDNNVHG-LYADGSTSNG 239
Query: 193 ---GFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVF 249
G W + + ++ GPL L G + + H G I + + + F
Sbjct: 240 TTFGAWLVMNTKDTYYGGPLHSDLTVD-GIVYNYIVSNHHGEGTPNI-----TNGFDRTF 293
Query: 250 GPIFIYLNSLSNEDDPLLLWEDAKQQMIFEVQSWPYDFPAS-----KDFPQSDQRGTLHG 304
GP F N + L E + SW +F S + S +RG++ G
Sbjct: 294 GPQFYLFNGGGSSS----LNELRSEAESLADPSWNVEFYDSIAKHVVGYVPSSKRGSVQG 349
Query: 305 RL-LVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTG 363
++ L + + +G Y + + YQ+W +A+G F +DH+ G
Sbjct: 350 QIKLPRGATRPIAILTVDGQYFQ--------DNSVDPRSYQYWVEMDANGKFQLDHVVEG 401
Query: 364 NYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEF 421
Y L + G GDY D + + I D ++P G +W +G PD+ + EF
Sbjct: 402 KYRLTVYADGIFGDYVRD-GVQVRGRKTTRIND-SWQPESAGVEVWRLGTPDKSSGEF 457
>sp|A1D144|RGLB_NEOFI Probable rhamnogalacturonate lyase B OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=rglB PE=3 SV=1
Length = 658
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 133/363 (36%), Gaps = 52/363 (14%)
Query: 80 FIMLHGSSGFYTYAIFEHLGEWPAF--NIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPD 137
+ + G +G + ++ + E F N+ R F+ N + ++ ++ + PLP
Sbjct: 124 WFLRDGETGLHMFSRLAYYNETTPFLRNLQEFRTLFRPNTQLWTHLTSSE--LQTAPLPS 181
Query: 138 DRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDD---KYLYSCKSQDIRVHGWI-----CAD 189
+ QV+ N + + + + KY +S + +D VHG
Sbjct: 182 KNAVSK-QVVVQDATWRFNNTPDDAYYTQFSEYFTKYTFSNQWRDNDVHGLYGDGTNSNG 240
Query: 190 PPVGFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVF 249
G W + + GPL L G + + H G I + + + F
Sbjct: 241 STYGAWLVM-----NTKGPLHSDLTVD-GIVYNYIVSNHHGEGTPNI-----TNGFDRTF 289
Query: 250 GPIFIYLNSLSNEDDPL--LLWEDAKQQMIFEVQSWPYDFPAS-----KDFPQSDQRGTL 302
GP F N L L E AK SW +F S + S +RG++
Sbjct: 290 GPQFYLFNGGKGSTSSLQDLRSEAAK----LADPSWNAEFYDSIAKHVVGYVPSSKRGSV 345
Query: 303 HGRLLVEDRYIN-MDYIAANGAYV---GLAPPGNAGSWQRECKGYQFWARANADGYFYID 358
GR+ + N + + +G Y + P YQ+W + G F ID
Sbjct: 346 DGRVKLPKGATNPIAILTVDGQYFQDNSVVP-----------SSYQYWTDIDTSGKFRID 394
Query: 359 HIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYA 418
+ G Y L + G GD+ D +T+ G + + + G +W +G PD+ +
Sbjct: 395 RVVEGKYRLTVYADGIFGDFVRD-GVTVKAGKTTTVKE-KWDAESAGKEVWRLGTPDKSS 452
Query: 419 AEF 421
EF
Sbjct: 453 GEF 455
>sp|Q4WR79|RGLB_ASPFU Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=rglB PE=3 SV=1
Length = 658
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 133/363 (36%), Gaps = 52/363 (14%)
Query: 80 FIMLHGSSGFYTYAIFEHLGEWPAF--NIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPD 137
+ + G +G + ++ + E F N+ R F+ N + ++ ++ + PLP
Sbjct: 124 WFLRDGETGLHMFSRLAYYNETTPFLRNLQEFRTLFRPNTQLWTHLTSSE--LQTAPLPS 181
Query: 138 DRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDD---KYLYSCKSQDIRVHGWI-----CAD 189
+ QV+ N + + + + KY +S + +D VHG
Sbjct: 182 KNAVSK-QVVVQDATWRFNNTPDDAYYTQFSEYFTKYTFSNQWRDNDVHGLYGDGTNSNG 240
Query: 190 PPVGFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVF 249
G W + + GPL L G + + H G I + + + F
Sbjct: 241 STYGAWLVM-----NTKGPLHSDLTVD-GIVYNYIVSNHHGEGTPNI-----TNGFDRTF 289
Query: 250 GPIFIYLNSLSNEDDPL--LLWEDAKQQMIFEVQSWPYDFPAS-----KDFPQSDQRGTL 302
GP F N L L E AK SW +F S + S +RG++
Sbjct: 290 GPQFYLFNGGKGSTSSLQDLRSEAAK----LADPSWNAEFYDSIAKHVVGYVPSSKRGSV 345
Query: 303 HGRLLVEDRYIN-MDYIAANGAYV---GLAPPGNAGSWQRECKGYQFWARANADGYFYID 358
GR+ + N + + +G Y + P YQ+W + G F ID
Sbjct: 346 DGRIKLPKGASNPIAILTVDGQYFQDNSVVP-----------SSYQYWTDIDTSGRFRID 394
Query: 359 HIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYA 418
+ G Y L + G GD+ D +T+ G + + + G +W +G PD+ +
Sbjct: 395 RVVEGKYRLTVYADGIFGDFVRD-GVTVRAGKTTTVKE-KWDAESAGKEIWRLGTPDKSS 452
Query: 419 AEF 421
EF
Sbjct: 453 GEF 455
>sp|B0XPA2|RGLB_ASPFC Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata
(strain CEA10 / CBS 144.89 / FGSC A1163) GN=rglB PE=3
SV=1
Length = 658
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 133/363 (36%), Gaps = 52/363 (14%)
Query: 80 FIMLHGSSGFYTYAIFEHLGEWPAF--NIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPD 137
+ + G +G + ++ + E F N+ R F+ N + ++ ++ + PLP
Sbjct: 124 WFLRDGETGLHMFSRLAYYNETTPFLRNLQEFRTLFRPNTQLWTHLTSSE--LQTAPLPS 181
Query: 138 DRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDD---KYLYSCKSQDIRVHGWI-----CAD 189
+ QV+ N + + + + KY +S + +D VHG
Sbjct: 182 KNAVSK-QVVVQDATWRFNNTPDDAYYTQFSEYFTKYTFSNQWRDNDVHGLYGDGTNSNG 240
Query: 190 PPVGFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVF 249
G W + + GPL L G + + H G I + + + F
Sbjct: 241 STYGAWLVM-----NTKGPLHSDLTVD-GIVYNYIVSNHHGEGTPNI-----TNGFDRTF 289
Query: 250 GPIFIYLNSLSNEDDPL--LLWEDAKQQMIFEVQSWPYDFPAS-----KDFPQSDQRGTL 302
GP F N L L E AK SW +F S + S +RG++
Sbjct: 290 GPQFYLFNGGKGSTSSLQDLRSEAAK----LADPSWNAEFYDSIAKHVVGYVPSSKRGSV 345
Query: 303 HGRLLVEDRYIN-MDYIAANGAYV---GLAPPGNAGSWQRECKGYQFWARANADGYFYID 358
GR+ + N + + +G Y + P YQ+W + G F ID
Sbjct: 346 DGRIKLPKGASNPIAILTVDGQYFQDNSVVP-----------SSYQYWTDIDTSGRFRID 394
Query: 359 HIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYA 418
+ G Y L + G GD+ D +T+ G + + + G +W +G PD+ +
Sbjct: 395 RVVEGKYRLTVYADGIFGDFVRD-GVTVRAGKTTTVKE-KWDAESAGKEIWRLGTPDKSS 452
Query: 419 AEF 421
EF
Sbjct: 453 GEF 455
>sp|Q5B5P1|RGLC_EMENI Probable rhamnogalacturonate lyase C OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rglC PE=3 SV=1
Length = 1041
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 33/187 (17%)
Query: 344 QFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPR 403
Q+WA + G F I + G Y + + G + D N+ +I GS + +K
Sbjct: 382 QYWAEIDGSGAFTIPRVVKGTYRVTIYADEIFGWFIKD-NVKVI-GS--NAHTFTWKEET 437
Query: 404 NGPTLWEIGIPDRYAAEF---YVPDPDPKYINKLYVNHTDRYRQYGLWERYAELYPD--- 457
G +W IG+PD+ + EF Y PD ++YR Y W +Y YP
Sbjct: 438 AGKEIWRIGVPDKSSGEFLHGYAPDTSKPL-------QPEQYRIY--WGKYD--YPSDFP 486
Query: 458 EDLIYIVNQSDYRKD-----WFF--AQVTRKKDNQTYEGT-TWQIKFELDNV----NESA 505
E + Y V +SD KD W F +Q ++ Y+ W I F+L ++A
Sbjct: 487 EGVNYHVGKSDPAKDLNYIHWSFFPSQGNHLRNEPYYQNVNNWTITFDLTASQLRNTKTA 546
Query: 506 VYKLRLA 512
+ ++LA
Sbjct: 547 TFTVQLA 553
>sp|Q2U5P7|RGLC_ASPOR Probable rhamnogalacturonate lyase C OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=rglC PE=3 SV=1
Length = 695
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 128/346 (36%), Gaps = 46/346 (13%)
Query: 193 GFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPI 252
G W + ++E+ GPL L V S H+ L G W GP
Sbjct: 244 GAWLVHNTVETYYGGPLHSDLV--VDGIVYNYLVSGHHGAPTPNLTHGFDRTW----GPQ 297
Query: 253 FIYLNSLSNEDDPLLLWEDAKQQMIFEVQSWPYDFPASK--DFPQSDQRGTLHGRLLVED 310
F Y N +E L DA + E + YD A +F S R T G++ +
Sbjct: 298 FYYFNRGDSETTLADLRADAAKYADPEWNAEFYDSIADHIPNFTPSTGRTTFKGKVSLPK 357
Query: 311 RYINMDYIAANGAYVGLAPPGNAGSWQR-ECKGYQFWARANADGYFYIDHIRTGNYSLYA 369
A + L+ G + Q+WA + G F I + G Y +
Sbjct: 358 --------GAKRPIIVLSEDGQDFQLNVFNTESLQYWAEIDKSGSFSIPRVVEGTYRITI 409
Query: 370 FVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEF---YVPDP 426
+ G + D ++ +++ D +K G +W IGIPD+ + E+ Y PD
Sbjct: 410 YADEIFGWFIQD-HVKVLKSQSKDY-SFTWKEESAGKEIWRIGIPDKSSGEYLHGYAPDT 467
Query: 427 DPKYINKLYVNHTDRYRQYGLWERYAELYPD---EDLIYIVNQSDYRKD-----WFF--A 476
+++R Y W +Y YP E + + V +SD +D W F +
Sbjct: 468 SKPL-------QPEQHRIY--WGKYD--YPADFPEGINFHVGKSDPSQDLNYIHWAFFPS 516
Query: 477 QVTRKKDNQTYEGT-TWQIKFEL--DNVNESAVYKLRLALASAHVS 519
Q + Y+ W + F+L D ++ + + +A A +
Sbjct: 517 QGNHLRTEPYYDNVNNWTVTFDLTADQLHNTNTATFTVQIAGAKTA 562
>sp|Q9JHG7|PK3CG_MOUSE Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit
gamma isoform OS=Mus musculus GN=Pik3cg PE=1 SV=2
Length = 1102
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 74 LNIDKRFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIA---DN-- 128
L ID RF++ HG + + I E +FN D + A N DK + MSI+ DN
Sbjct: 467 LLIDHRFLLRHGDYVLHMWQISGKAEEQGSFNADKLTSA--TNPDKENSMSISILLDNYC 524
Query: 129 ------RQRLVPLPD-DRLPGR--GQVLAYPEAVLLVNPVEP 161
+ R P P+ DR+ Q+ EA++ +P+ P
Sbjct: 525 HPIALPKHRPTPDPEGDRVRAEMPNQLRKQLEAIIATDPLNP 566
>sp|A6VQY7|NAPA_ACTSZ Periplasmic nitrate reductase OS=Actinobacillus succinogenes
(strain ATCC 55618 / 130Z) GN=napA PE=3 SV=1
Length = 826
Score = 33.5 bits (75), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 397 LVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWERYA 452
L KP G TL+E+ + +F VP P YIN +H Y Q GL+E YA
Sbjct: 578 LAQKPEYRGKTLYEVLYKNGEVDKFQVPTNIPGYIND-EADHFGFYLQKGLFEEYA 632
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.140 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 257,536,128
Number of Sequences: 539616
Number of extensions: 11953745
Number of successful extensions: 22967
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 22944
Number of HSP's gapped (non-prelim): 16
length of query: 610
length of database: 191,569,459
effective HSP length: 123
effective length of query: 487
effective length of database: 125,196,691
effective search space: 60970788517
effective search space used: 60970788517
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)