Query 007269
Match_columns 610
No_of_seqs 198 out of 290
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 21:17:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06045 Rhamnogal_lyase: Rham 100.0 3.3E-47 7.1E-52 372.2 13.2 150 15-167 54-203 (203)
2 PF14683 CBM-like: Polysacchar 100.0 1.3E-46 2.8E-51 362.0 10.2 165 406-596 1-167 (167)
3 PF09284 RhgB_N: Rhamnogalactu 100.0 3.8E-38 8.2E-43 313.0 17.4 190 42-291 53-245 (249)
4 PF14686 fn3_3: Polysaccharide 99.9 3.1E-22 6.7E-27 176.2 8.7 93 298-397 1-95 (95)
5 PF13620 CarboxypepD_reg: Carb 98.8 1.8E-08 3.8E-13 84.8 8.8 81 301-400 1-82 (82)
6 PF13715 DUF4480: Domain of un 98.5 1.8E-06 3.9E-11 73.8 10.8 88 301-413 1-88 (88)
7 cd03863 M14_CPD_II The second 98.0 2.3E-05 5.1E-10 85.1 9.9 79 299-400 296-374 (375)
8 cd03865 M14_CPE_H Peptidase M1 98.0 1.6E-05 3.4E-10 87.1 8.3 99 262-399 303-401 (402)
9 cd03864 M14_CPN Peptidase M14 97.9 3.4E-05 7.3E-10 84.4 9.4 76 300-399 316-391 (392)
10 cd06245 M14_CPD_III The third 97.7 0.00012 2.6E-09 79.3 9.6 77 299-400 286-362 (363)
11 cd03868 M14_CPD_I The first ca 97.7 0.00012 2.6E-09 79.4 8.5 76 299-398 295-371 (372)
12 cd03858 M14_CP_N-E_like Carbox 97.6 0.00024 5.3E-09 77.0 9.4 72 300-394 298-370 (374)
13 cd03867 M14_CPZ Peptidase M14- 97.2 0.00099 2.1E-08 73.1 8.8 72 300-394 318-391 (395)
14 cd03866 M14_CPM Peptidase M14 96.6 0.0089 1.9E-07 65.3 9.3 70 299-389 294-363 (376)
15 PF08400 phage_tail_N: Prophag 95.4 0.083 1.8E-06 49.9 8.7 78 301-390 4-81 (134)
16 PRK15036 hydroxyisourate hydro 95.3 0.041 8.9E-07 52.1 6.4 66 298-374 25-94 (137)
17 PF08308 PEGA: PEGA domain; I 94.4 0.27 5.9E-06 40.4 8.3 45 353-401 25-69 (71)
18 cd00421 intradiol_dioxygenase 93.6 0.16 3.5E-06 48.3 6.2 64 298-367 10-80 (146)
19 PF03422 CBM_6: Carbohydrate b 93.6 0.52 1.1E-05 42.5 9.3 80 504-597 44-124 (125)
20 cd03869 M14_CPX_like Peptidase 93.3 0.2 4.2E-06 55.5 7.2 67 299-389 329-395 (405)
21 KOG1948 Metalloproteinase-rela 92.5 0.33 7.2E-06 57.4 7.7 55 300-373 316-371 (1165)
22 PF09430 DUF2012: Protein of u 92.3 0.62 1.3E-05 43.1 7.9 40 345-387 22-61 (123)
23 cd03463 3,4-PCD_alpha Protocat 91.8 0.35 7.5E-06 48.1 5.9 63 298-366 35-106 (185)
24 cd03459 3,4-PCD Protocatechuat 91.2 0.43 9.4E-06 46.2 5.9 64 298-367 14-87 (158)
25 PF07210 DUF1416: Protein of u 90.5 2.9 6.2E-05 36.6 9.4 62 298-376 6-67 (85)
26 PF05738 Cna_B: Cna protein B- 90.3 0.92 2E-05 36.9 6.3 45 347-392 21-67 (70)
27 TIGR02465 chlorocat_1_2 chloro 89.6 0.7 1.5E-05 48.0 6.0 64 298-367 97-165 (246)
28 COG3485 PcaH Protocatechuate 3 89.3 0.64 1.4E-05 47.6 5.5 65 298-368 71-144 (226)
29 TIGR02423 protocat_alph protoc 89.2 0.77 1.7E-05 46.0 5.8 65 297-367 37-111 (193)
30 cd03462 1,2-CCD chlorocatechol 89.0 1.1 2.4E-05 46.5 7.0 64 297-366 97-165 (247)
31 PF00775 Dioxygenase_C: Dioxyg 88.9 0.87 1.9E-05 45.2 6.0 64 298-367 28-98 (183)
32 PF07495 Y_Y_Y: Y_Y_Y domain; 88.3 0.65 1.4E-05 37.3 3.8 28 346-373 21-49 (66)
33 cd03464 3,4-PCD_beta Protocate 87.8 1.3 2.8E-05 45.3 6.4 65 297-367 63-137 (220)
34 PF03170 BcsB: Bacterial cellu 87.6 1.4 3.1E-05 51.0 7.5 78 490-582 29-111 (605)
35 TIGR02422 protocat_beta protoc 87.6 1.3 2.8E-05 45.3 6.3 67 295-367 56-132 (220)
36 cd03458 Catechol_intradiol_dio 86.5 2.5 5.3E-05 44.2 7.8 65 297-367 102-171 (256)
37 smart00606 CBD_IV Cellulose Bi 84.8 11 0.00024 34.2 10.5 89 490-596 39-129 (129)
38 cd03460 1,2-CTD Catechol 1,2 d 84.6 1.8 3.8E-05 45.9 5.7 65 297-367 122-191 (282)
39 TIGR02438 catachol_actin catec 84.4 1.5 3.3E-05 46.4 5.1 65 297-367 130-199 (281)
40 TIGR02439 catechol_proteo cate 83.9 2.1 4.5E-05 45.4 5.9 65 297-367 126-195 (285)
41 KOG1948 Metalloproteinase-rela 83.5 2.6 5.7E-05 50.2 7.0 57 301-373 120-176 (1165)
42 cd03461 1,2-HQD Hydroxyquinol 82.4 2.6 5.6E-05 44.5 5.9 65 297-367 118-187 (277)
43 PF14900 DUF4493: Domain of un 82.2 35 0.00076 34.6 13.9 54 343-400 47-107 (235)
44 TIGR02962 hdxy_isourate hydrox 79.9 4.2 9E-05 37.4 5.6 50 317-372 13-67 (112)
45 PRK11114 cellulose synthase re 78.9 3.1 6.8E-05 49.7 5.8 75 493-581 84-163 (756)
46 KOG2649 Zinc carboxypeptidase 78.7 7.6 0.00016 43.8 8.2 77 300-401 378-455 (500)
47 PF10670 DUF4198: Domain of un 78.6 5.7 0.00012 38.9 6.6 62 299-371 150-211 (215)
48 PF02837 Glyco_hydro_2_N: Glyc 77.9 5.4 0.00012 37.7 6.0 69 492-582 72-140 (167)
49 PF13364 BetaGal_dom4_5: Beta- 76.1 11 0.00023 34.3 7.1 56 507-580 50-106 (111)
50 PF00576 Transthyretin: HIUase 76.0 2.6 5.7E-05 38.7 3.2 51 317-372 13-68 (112)
51 cd05469 Transthyretin_like Tra 74.6 5.6 0.00012 36.7 4.9 51 317-372 13-67 (113)
52 cd05821 TLP_Transthyretin Tran 73.4 8.4 0.00018 36.0 5.8 64 299-372 6-73 (121)
53 PF03170 BcsB: Bacterial cellu 67.5 10 0.00022 44.0 6.2 79 489-581 323-409 (605)
54 cd05822 TLP_HIUase HIUase (5-h 65.6 14 0.00031 33.9 5.5 50 317-372 13-67 (112)
55 COG2351 Transthyretin-like pro 65.1 23 0.00049 33.1 6.6 66 300-380 9-79 (124)
56 cd03457 intradiol_dioxygenase_ 61.3 20 0.00043 35.9 6.1 62 300-366 27-100 (188)
57 PF02369 Big_1: Bacterial Ig-l 58.3 50 0.0011 29.2 7.5 69 298-374 21-91 (100)
58 smart00095 TR_THY Transthyreti 58.2 26 0.00056 32.8 5.9 62 300-371 4-69 (121)
59 PLN03059 beta-galactosidase; P 58.2 12 0.00025 45.3 4.5 84 491-582 622-715 (840)
60 PF01060 DUF290: Transthyretin 58.1 20 0.00043 30.5 4.8 39 317-360 8-46 (80)
61 PF13754 Big_3_4: Bacterial Ig 50.7 36 0.00078 26.9 4.8 31 343-373 2-34 (54)
62 PF03944 Endotoxin_C: delta en 48.5 56 0.0012 30.8 6.6 96 493-597 41-140 (143)
63 PRK10340 ebgA cryptic beta-D-g 43.4 34 0.00073 42.5 5.4 67 492-581 113-179 (1021)
64 PF08531 Bac_rhamnosid_N: Alph 43.3 23 0.0005 34.4 3.3 60 506-582 5-66 (172)
65 PF01190 Pollen_Ole_e_I: Polle 39.5 53 0.0011 28.7 4.6 37 317-358 18-54 (97)
66 PF11008 DUF2846: Protein of u 38.6 38 0.00081 30.8 3.7 44 351-394 56-99 (117)
67 PRK10150 beta-D-glucuronidase; 36.3 86 0.0019 36.4 7.0 66 493-580 70-135 (604)
68 PF09912 DUF2141: Uncharacteri 32.5 97 0.0021 28.2 5.3 22 351-372 41-62 (112)
69 PF11797 DUF3324: Protein of u 31.3 54 0.0012 30.9 3.6 30 359-388 102-131 (140)
70 PRK09525 lacZ beta-D-galactosi 29.2 1.4E+02 0.003 37.3 7.5 67 492-581 124-191 (1027)
71 PF07550 DUF1533: Protein of u 28.6 52 0.0011 27.0 2.6 19 560-579 36-55 (65)
72 PF12866 DUF3823: Protein of u 28.0 2.4E+02 0.0053 28.9 7.9 90 299-400 21-112 (222)
73 PF13954 PapC_N: PapC N-termin 24.3 1E+02 0.0022 29.1 4.1 26 359-387 26-51 (146)
74 PRK13211 N-acetylglucosamine-b 23.9 3.4E+02 0.0073 31.2 8.7 67 291-372 320-388 (478)
75 smart00634 BID_1 Bacterial Ig- 23.2 3.9E+02 0.0084 22.9 7.2 65 300-375 20-86 (92)
76 cd06470 ACD_IbpA-B_like Alpha- 21.9 2.3E+02 0.005 24.4 5.5 26 505-530 11-36 (90)
77 PF14200 RicinB_lectin_2: Rici 21.5 1.2E+02 0.0026 26.4 3.8 37 319-363 35-72 (105)
78 PF10794 DUF2606: Protein of u 21.2 2.4E+02 0.0051 26.6 5.6 55 315-372 51-107 (131)
79 PF04571 Lipin_N: lipin, N-ter 20.0 1.1E+02 0.0024 28.2 3.2 38 482-531 35-72 (110)
No 1
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=100.00 E-value=3.3e-47 Score=372.16 Aligned_cols=150 Identities=65% Similarity=1.219 Sum_probs=147.1
Q ss_pred eeCcceEEEeecCCCcCCCCCceeeeccceEEEEEecCCEEEEEEEeeecCCCCCCccccceeEEEEEecCCceEEEEEE
Q 007269 15 LSTYSYWDLVWSKPGKKGTKGTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFYTYAI 94 (610)
Q Consensus 15 ~~~~gywd~~w~~~g~~~~~~~~~~~~gt~~~vi~~~~~~i~Vs~~~~~~~~~~g~~~~l~l~~~~v~r~G~sgiY~y~~ 94 (610)
+.+|||||++|+.||+ +++|++++||+|+||++++++|||||+++|+||++++.+||+||+||||++|+||||+|+|
T Consensus 54 e~nrGYwD~~W~~~G~---~~~~~~~~gt~f~Vi~~te~qVevSF~r~w~~s~~~~~~plnIDkryVm~rG~SGfY~YAI 130 (203)
T PF06045_consen 54 ENNRGYWDLVWNEPGS---KGKFDRIKGTEFSVIEQTEEQVEVSFSRTWDPSLDGKSVPLNIDKRYVMLRGSSGFYSYAI 130 (203)
T ss_pred ccCCceEEEecccCCc---cccccccCCcEEEEEEcCCCeEEEEEEcccCcCCCCCcceeEeeEEEEEecCCceEEEEEE
Confidence 4789999999999998 7799999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCccceEEEEEcCCCCcccceeccccccccCCCCCCCCCCCceeeecceEEeeCCCCCCCCcEE
Q 007269 95 FEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPDDRLPGRGQVLAYPEAVLLVNPVEPEFKGEV 167 (610)
Q Consensus 95 ~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~~~d~r~~~mP~p~d~~~~~g~~l~~~ea~~l~~~~~~~~~G~~ 167 (610)
++|+++||+++|+|+|+||||++++|++|+++|+|||.||+|+||++++|++|+||||++|++|+||+++|||
T Consensus 131 ~e~~~~~Pa~~l~q~R~vfKl~~d~F~ymai~d~rqr~mP~~~D~~~~~~~~l~y~eav~l~~p~~~~~~gev 203 (203)
T PF06045_consen 131 FEHPAGWPAFDLGQTRIVFKLNKDKFHYMAISDDRQRIMPSPDDRDPARGQPLAYPEAVLLVNPINPQFRGEV 203 (203)
T ss_pred EecCCCCCCcccceeEEEEECCccccceEEecccccccCCChHHccccCCCcccCchhhhcCCCCCccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=100.00 E-value=1.3e-46 Score=361.95 Aligned_cols=165 Identities=49% Similarity=0.797 Sum_probs=115.4
Q ss_pred CCeeEEeecCCCccceecCCCCccccccccccCcchhhhchhhhhhcccCCCCCeEEEeeecCCCCCeeeEEEeecCCCC
Q 007269 406 PTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDNQ 485 (610)
Q Consensus 406 ~~LweIGipDrta~eF~~~d~~~~~~n~l~~~hp~~~R~yglW~~y~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~~ 485 (610)
++|||||+|||+|.||+++| |+++|||| |++|+++||++|++||||+| +++||||||+++
T Consensus 1 ~~iW~IG~~Drta~eF~~~~-------------~~~~r~~~-~~d~~~~~p~~~~~ytVG~S-~~~Dw~y~~~~~----- 60 (167)
T PF14683_consen 1 PTIWQIGTPDRTAAEFRNGD-------------PDKYRQYG-WSDYSRDFPWEDLTYTVGSS-PAKDWPYAQWGR----- 60 (167)
T ss_dssp SEEEEEE-SSSS-TTSBTHH--------------HHTTS---TT--TTS----S-EEETTTS--GGGSBSEEETT-----
T ss_pred CcceEeCCCCCCchhhccCC-------------hhhhhhcC-cccchhhCCCCCCEEEEccC-cccCCcEEEEec-----
Confidence 58999999999999999873 25799998 99999999998999999999 889999999987
Q ss_pred cCCCceEEEEEEecCCCCcceEEEEEeeecc-CCceeEEEEcCCCCCCCCcccccccCCCeeeeeeEe-eeeEEEEEEee
Q 007269 486 TYEGTTWQIKFELDNVNESAVYKLRLALASA-HVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIY-GLYWLFNVDVP 563 (610)
Q Consensus 486 ~~~~~~w~I~F~L~~~~~~~~~tLriala~a-~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~-G~~~~~~~~ip 563 (610)
.+++|+|+|+|++++..+.+||||+||+| ++++++|+|||+.... ....+++|++++|||+| |+|++++|+||
T Consensus 61 --~~~~w~I~F~l~~~~~~~~~tL~i~la~a~~~~~~~V~vNg~~~~~---~~~~~~~d~~~~r~g~~~G~~~~~~~~ip 135 (167)
T PF14683_consen 61 --VNGTWTIKFDLDAVQLAGTYTLRIALAGASAGGRLQVSVNGWSGPF---PSAPFGNDNAIYRSGIHRGNYRLYEFDIP 135 (167)
T ss_dssp --TS--EEEEEEE-GGG-S--EEEEEEEEEEETT-EEEEEETTEE--------------S--GGGT---S---EEEEEE-
T ss_pred --cCCCEEEEEECCCCccCCcEEEEEEeccccCCCCEEEEEcCccCCc---cccccCCCCceeeCceecccEEEEEEEEc
Confidence 35999999999999976799999999999 8999999999965542 23567899999999998 99999999999
Q ss_pred cCceecCCceEEEEEEeccCCCCceEEEEEEEE
Q 007269 564 GALFVKGNNNTIYLTQALSGSPFRGVMYDYIRL 596 (610)
Q Consensus 564 a~~L~~G~~NtI~lt~~~g~s~f~gvmyD~IrL 596 (610)
+++|++|+ |+|+|++++|++.+.|||||||||
T Consensus 136 a~~L~~G~-Nti~lt~~~gs~~~~gvmyD~I~L 167 (167)
T PF14683_consen 136 ASLLKAGE-NTITLTVPSGSGLSPGVMYDYIRL 167 (167)
T ss_dssp TTSS-SEE-EEEEEEEE-S-GGSSEEEEEEEEE
T ss_pred HHHEEecc-EEEEEEEccCCCccCeEEEEEEEC
Confidence 99999999 999999999976677999999998
No 3
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding []. ; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=100.00 E-value=3.8e-38 Score=313.05 Aligned_cols=190 Identities=17% Similarity=0.219 Sum_probs=121.8
Q ss_pred cceEEEEEecCCEEEEEEEeeecCCCCCCccccceeEEEEEecCCceEEEEEEeeccCCCCCCCccceEEEEEcCCCCcc
Q 007269 42 ATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFH 121 (610)
Q Consensus 42 gt~~~vi~~~~~~i~Vs~~~~~~~~~~g~~~~l~l~~~~v~r~G~sgiY~y~~~~~~~~~p~~~lge~R~v~Rl~~~~f~ 121 (610)
|+...-+++..++|+|+|+.. +|+||||+|+|++.|||++..+. +.+|+|||+|.||++++||
T Consensus 53 GsatVs~~~~~~~IkVt~~~~------------tLthyyv~r~g~~~IYmaT~~~~-----e~~igelRfIaRL~~~~lp 115 (249)
T PF09284_consen 53 GSATVSITTSGDYIKVTCKTG------------TLTHYYVARPGENNIYMATYITA-----EPSIGELRFIARLNRSILP 115 (249)
T ss_dssp SS-EEEEEEETTEEEEEEE-S------------SEEEEEEEETT--EEEEEEEESS-------TTS-EEEEEEE-TTTS-
T ss_pred CccEEEEEeeCCEEEEEEEcC------------CeEEEEEEecCCceEEEEeccCC-----CCCccceEEEEEcccccCC
Confidence 455555666677999999984 79999999999999999999866 5589999999999999999
Q ss_pred cceeccccccccCCCCCCCCCCCceeeecceEEeeCCCCCCCCcEEeeeeeecccccccceEEEEeCCCCeEEEEEcCCC
Q 007269 122 FMSIADNRQRLVPLPDDRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDDKYLYSCKSQDIRVHGWICADPPVGFWQITPSI 201 (610)
Q Consensus 122 ~~~~~d~r~~~mP~p~d~~~~~g~~l~~~ea~~l~~~~~~~~~G~~~sKY~ys~~~~D~~vhG~~s~g~~vG~W~I~ps~ 201 (610)
+-.. ... ..+ ..|...++.+.|++.. +|+++||||++.+++|+++|||. |+++|+|||++++
T Consensus 116 n~~~----~~~---~~~---~~g~taIEgsDVf~~~------~G~TrSKfYSs~r~IDd~~hgv~--g~~vgv~mi~~~~ 177 (249)
T PF09284_consen 116 NEYP----YGD---VST---TDGGTAIEGSDVFLVS------DGQTRSKFYSSQRFIDDDVHGVS--GSAVGVYMIMSNY 177 (249)
T ss_dssp EEET----TGG---GG-----TT-EEEETTTEEEE-------TTEEEEGGGG--BGGG-SEEEEE---SS-EEEEE----
T ss_pred CCCC----ccc---ccc---cCCceEEeeccEEEec------CceEeeeeccccceeccceEEEe--cCCeEEEEEeCCc
Confidence 9210 111 111 1344445666676663 69999999999999999999998 7889999999999
Q ss_pred ccccCCCceecccccCCCc---EEEEEeeceecccceeeecCCCCCcceeeeeEEEEEeCCCCCCCcchhHHHHHHHHHh
Q 007269 202 ESRSAGPLKQYLASHVGPT---SLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSLSNEDDPLLLWEDAKQQMIF 278 (610)
Q Consensus 202 E~~sGGPlkqdL~~h~g~~---~l~y~~s~Hy~g~~~~~~~~~Ge~w~kv~GP~~~y~N~g~~~~~~~~l~~DA~~~~~~ 278 (610)
|.+|||||+|||++|.++. ||+||+|+|.++|++|+ ++||||+|+|++|++|+.
T Consensus 178 E~SSGGPFfRDI~~~~~~~~~~Ly~ymnSgH~qTE~~R~---------GLhGPYaL~FT~g~~Ps~-------------- 234 (249)
T PF09284_consen 178 EKSSGGPFFRDINTNNGGDGNELYNYMNSGHTQTEPYRM---------GLHGPYALAFTDGGAPSA-------------- 234 (249)
T ss_dssp TT-SS-TT-B---EEE-SS-EEEEEEEE-STT--S-------------EEEEEEEEEEESS----S--------------
T ss_pred cccCCCCchhhhhhccCCccceeeeeEecCcccCchhcc---------ccCCceEEEEcCCCCCCC--------------
Confidence 9999999999999998764 99999999999998865 699999999999999853
Q ss_pred hccCCCCCCCCCC
Q 007269 279 EVQSWPYDFPASK 291 (610)
Q Consensus 279 E~~~Wpysf~~s~ 291 (610)
.+-+++|+++-
T Consensus 235 --~~~D~sff~~L 245 (249)
T PF09284_consen 235 --SDLDTSFFDDL 245 (249)
T ss_dssp -------GGGGGT
T ss_pred --ccccccchhhc
Confidence 23478999863
No 4
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=99.87 E-value=3.1e-22 Score=176.24 Aligned_cols=93 Identities=48% Similarity=0.887 Sum_probs=53.9
Q ss_pred CCeEEEEEEEecccccccccccc-CccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEEEEcceec
Q 007269 298 QRGTLHGRLLVEDRYINMDYIAA-NGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIG 376 (610)
Q Consensus 298 qRGtVsG~l~~~d~~~~~~~~pA-~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G 376 (610)
+||+|+|+|+++|++. ..++ ..++|+|+.+++. + ++++||||++||++|+|+|+|||||+|+|+||++|++|
T Consensus 1 ~RG~VsG~l~l~dg~~---~~~~~~~~~Vgl~~~~d~---~-q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g~~g 73 (95)
T PF14686_consen 1 QRGSVSGRLTLSDGVT---NPPAGANAVVGLAPPGDF---Q-QNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADGIFG 73 (95)
T ss_dssp G-BEEEEEEE---SS-----TT--S-EEEEEE------------SS-EEEEE--TTSEEE---B-SEEEEEEEEE----T
T ss_pred CCCEEEEEEEEccCcc---cCccceeEEEEeeecccc---c-cCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEecccC
Confidence 5999999999999542 1344 6789999988874 4 59999999999999999999999999999999999999
Q ss_pred eeee-eeeEEEeCCceeeecce
Q 007269 377 DYKY-DFNITIIEGSYIDIGDL 397 (610)
Q Consensus 377 ~~~~-~~~VtV~aG~t~~lg~l 397 (610)
|+.. +.+|+|++|++++|++|
T Consensus 74 ~~~~~~~~ItV~~g~~~~lg~~ 95 (95)
T PF14686_consen 74 DYKVASDSITVSGGTTTDLGDL 95 (95)
T ss_dssp TEEEEEEEEEE-T-EEE-----
T ss_pred ceEEecceEEEcCCcEeccccC
Confidence 9986 78899999999988764
No 5
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.82 E-value=1.8e-08 Score=84.79 Aligned_cols=81 Identities=23% Similarity=0.416 Sum_probs=60.1
Q ss_pred EEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEEEEcceeceeee
Q 007269 301 TLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKY 380 (610)
Q Consensus 301 tVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~ 380 (610)
+|+|+|...+ +.|..+|.|.|..... +..+-+.||++|.|.|++++||+|+|.+...|+. ..
T Consensus 1 tI~G~V~d~~------g~pv~~a~V~l~~~~~---------~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~---~~ 62 (82)
T PF13620_consen 1 TISGTVTDAT------GQPVPGATVTLTDQDG---------GTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQ---PQ 62 (82)
T ss_dssp -EEEEEEETT------SCBHTT-EEEET--TT---------TECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE----E
T ss_pred CEEEEEEcCC------CCCcCCEEEEEEEeeC---------CCEEEEEECCCceEEEEccCCEeEEEEEEECCcc---eE
Confidence 6899999877 8999999999974332 3567899999999999999999999999999765 33
Q ss_pred ee-eEEEeCCceeeecceEEe
Q 007269 381 DF-NITIIEGSYIDIGDLVYK 400 (610)
Q Consensus 381 ~~-~VtV~aG~t~~lg~l~~~ 400 (610)
.. .|+|.+|++..+ +|+++
T Consensus 63 ~~~~v~v~~~~~~~~-~i~L~ 82 (82)
T PF13620_consen 63 TQENVTVTAGQTTTV-DITLE 82 (82)
T ss_dssp EEEEEEESSSSEEE---EEEE
T ss_pred EEEEEEEeCCCEEEE-EEEEC
Confidence 33 599999999887 57763
No 6
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=98.46 E-value=1.8e-06 Score=73.85 Aligned_cols=88 Identities=20% Similarity=0.309 Sum_probs=68.7
Q ss_pred EEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEEEEcceeceeee
Q 007269 301 TLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKY 380 (610)
Q Consensus 301 tVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~ 380 (610)
+|+|+|...+ .+.|..+|.|.+.... ..+.||++|.|+|. +++|+|+|.+...|+. ..
T Consensus 1 ti~G~V~d~~-----t~~pl~~a~V~~~~~~-------------~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~---~~ 58 (88)
T PF13715_consen 1 TISGKVVDSD-----TGEPLPGATVYLKNTK-------------KGTVTDENGRFSIK-LPEGDYTLKISYIGYE---TK 58 (88)
T ss_pred CEEEEEEECC-----CCCCccCeEEEEeCCc-------------ceEEECCCeEEEEE-EcCCCeEEEEEEeCEE---EE
Confidence 5899998765 3789999999997443 37889999999999 9999999999999765 55
Q ss_pred eeeEEEeCCceeeecceEEeCCCCCCCeeEEee
Q 007269 381 DFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGI 413 (610)
Q Consensus 381 ~~~VtV~aG~t~~lg~l~~~~~~~g~~LweIGi 413 (610)
...|.+..++...+ ++.+.+ +..+|-||.+
T Consensus 59 ~~~i~~~~~~~~~~-~i~L~~--~~~~L~eVvV 88 (88)
T PF13715_consen 59 TITISVNSNKNTNL-NIYLEP--KSNQLDEVVV 88 (88)
T ss_pred EEEEEecCCCEEEE-EEEEee--CcccCCeEEC
Confidence 55677777665566 577764 3667877753
No 7
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=98.01 E-value=2.3e-05 Score=85.13 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=64.7
Q ss_pred CeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEEEEcceecee
Q 007269 299 RGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDY 378 (610)
Q Consensus 299 RGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~ 378 (610)
...|+|+|.... .+.|..+|.|.+.... ..+.||.+|.|.+ .|+||+|+|+|+..|+.
T Consensus 296 ~~gI~G~V~D~~-----~g~pl~~AtV~V~g~~-------------~~~~Td~~G~f~~-~l~pG~ytl~vs~~GY~--- 353 (375)
T cd03863 296 HRGVRGFVLDAT-----DGRGILNATISVADIN-------------HPVTTYKDGDYWR-LLVPGTYKVTASARGYD--- 353 (375)
T ss_pred cCeEEEEEEeCC-----CCCCCCCeEEEEecCc-------------CceEECCCccEEE-ccCCeeEEEEEEEcCcc---
Confidence 579999998753 2789999999997433 2678999999999 69999999999999875
Q ss_pred eeeeeEEEeCCceeeecceEEe
Q 007269 379 KYDFNITIIEGSYIDIGDLVYK 400 (610)
Q Consensus 379 ~~~~~VtV~aG~t~~lg~l~~~ 400 (610)
..+.+|+|.+|+++.+ ++.++
T Consensus 354 ~~~~~v~V~~~~~~~~-~~~L~ 374 (375)
T cd03863 354 PVTKTVEVDSKGAVQV-NFTLS 374 (375)
T ss_pred cEEEEEEEcCCCcEEE-EEEec
Confidence 5556799999999887 57764
No 8
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=97.99 E-value=1.6e-05 Score=87.05 Aligned_cols=99 Identities=19% Similarity=0.320 Sum_probs=75.3
Q ss_pred CCCcchhHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccc
Q 007269 262 EDDPLLLWEDAKQQMIFEVQSWPYDFPASKDFPQSDQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECK 341 (610)
Q Consensus 262 ~~~~~~l~~DA~~~~~~E~~~Wpysf~~s~~y~~~~qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~k 341 (610)
.+....+|++-|.-+.+ |.....|| |+|+|+... +.|..+|.|.+....
T Consensus 303 ~~~L~~~W~~n~~all~--------------~~~q~~~g-I~G~V~D~~------g~pI~~AtV~V~g~~---------- 351 (402)
T cd03865 303 EETLKQYWEDNKNSLVN--------------YIEQVHRG-VKGFVKDLQ------GNPIANATISVEGID---------- 351 (402)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHhccc-eEEEEECCC------CCcCCCeEEEEEcCc----------
Confidence 34466788888765532 22223477 999998765 788999999997433
Q ss_pred cceeEEEECCccceEeCCccCCceEEEEEEcceeceeeeeeeEEEeCCceeeecceEE
Q 007269 342 GYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVY 399 (610)
Q Consensus 342 gyQywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~lg~l~~ 399 (610)
..+.||.+|.|.+ .++||+|+|+|.+.|+. .....|+|.+|+++.+ ++++
T Consensus 352 ---~~~~T~~~G~Y~~-~L~pG~Ytv~vsa~Gy~---~~~~~V~V~~~~~~~v-df~L 401 (402)
T cd03865 352 ---HDITSAKDGDYWR-LLAPGNYKLTASAPGYL---AVVKKVAVPYSPAVRV-DFEL 401 (402)
T ss_pred ---cccEECCCeeEEE-CCCCEEEEEEEEecCcc---cEEEEEEEcCCCcEEE-eEEe
Confidence 2567999999998 89999999999999876 5557799999998877 4665
No 9
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=97.93 E-value=3.4e-05 Score=84.35 Aligned_cols=76 Identities=13% Similarity=0.200 Sum_probs=63.2
Q ss_pred eEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEEEEcceeceee
Q 007269 300 GTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYK 379 (610)
Q Consensus 300 GtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~ 379 (610)
..|+|+|+..+ +.|..+|.|.+.... .-+.||++|.| +.+++||+|+|.|+..|+. .
T Consensus 316 ~gI~G~V~D~~------g~pi~~A~V~v~g~~-------------~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~---~ 372 (392)
T cd03864 316 QGIKGMVTDEN------NNGIANAVISVSGIS-------------HDVTSGTLGDY-FRLLLPGTYTVTASAPGYQ---P 372 (392)
T ss_pred CeEEEEEECCC------CCccCCeEEEEECCc-------------cceEECCCCcE-EecCCCeeEEEEEEEcCce---e
Confidence 48999998876 789999999996332 36789999999 9999999999999999876 5
Q ss_pred eeeeEEEeCCceeeecceEE
Q 007269 380 YDFNITIIEGSYIDIGDLVY 399 (610)
Q Consensus 380 ~~~~VtV~aG~t~~lg~l~~ 399 (610)
++.+|+|.+++++.+ ++++
T Consensus 373 ~t~~v~V~~~~~~~~-df~L 391 (392)
T cd03864 373 STVTVTVGPAEATLV-NFQL 391 (392)
T ss_pred EEEEEEEcCCCcEEE-eeEe
Confidence 666799999987766 4654
No 10
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=97.73 E-value=0.00012 Score=79.33 Aligned_cols=77 Identities=14% Similarity=0.266 Sum_probs=63.6
Q ss_pred CeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEEEEcceecee
Q 007269 299 RGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDY 378 (610)
Q Consensus 299 RGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~ 378 (610)
.-.|+|+|+..+ |.|..+|.|.+... . .+.||.+|.|.+. ++||+|+|.+...|+.
T Consensus 286 ~~gI~G~V~d~~------g~pi~~A~V~v~g~-------------~-~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~--- 341 (363)
T cd06245 286 HKGVHGVVTDKA------GKPISGATIVLNGG-------------H-RVYTKEGGYFHVL-LAPGQHNINVIAEGYQ--- 341 (363)
T ss_pred CcEEEEEEEcCC------CCCccceEEEEeCC-------------C-ceEeCCCcEEEEe-cCCceEEEEEEEeCce---
Confidence 357999998765 78999999999632 1 5679999999997 9999999999999776
Q ss_pred eeeeeEEEeCCceeeecceEEe
Q 007269 379 KYDFNITIIEGSYIDIGDLVYK 400 (610)
Q Consensus 379 ~~~~~VtV~aG~t~~lg~l~~~ 400 (610)
..+.+|+|.+++++.+ ++++.
T Consensus 342 ~~~~~V~v~~~~~~~~-~f~L~ 362 (363)
T cd06245 342 QEHLPVVVSHDEASSV-KIVLD 362 (363)
T ss_pred eEEEEEEEcCCCeEEE-EEEec
Confidence 5667799999988777 57764
No 11
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=97.67 E-value=0.00012 Score=79.43 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=61.0
Q ss_pred CeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEEEEcceecee
Q 007269 299 RGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDY 378 (610)
Q Consensus 299 RGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~ 378 (610)
.+.|+|+|+..+ +.|..+|.|.+.... ..+.||++|.|.+ +++||+|+|.+...|+.
T Consensus 295 ~~~i~G~V~d~~------g~pv~~A~V~v~~~~-------------~~~~td~~G~y~~-~l~~G~Y~l~vs~~Gf~--- 351 (372)
T cd03868 295 HIGVKGFVRDAS------GNPIEDATIMVAGID-------------HNVTTAKFGDYWR-LLLPGTYTITAVAPGYE--- 351 (372)
T ss_pred CCceEEEEEcCC------CCcCCCcEEEEEecc-------------cceEeCCCceEEe-cCCCEEEEEEEEecCCC---
Confidence 478999998876 789999999997433 3689999999984 79999999999999876
Q ss_pred eee-eeEEEeCCceeeecceE
Q 007269 379 KYD-FNITIIEGSYIDIGDLV 398 (610)
Q Consensus 379 ~~~-~~VtV~aG~t~~lg~l~ 398 (610)
.+. ..|+|.+|+++.+ +++
T Consensus 352 ~~~~~~v~v~~g~~~~~-~~~ 371 (372)
T cd03868 352 PSTVTDVVVKEGEATSV-NFT 371 (372)
T ss_pred ceEEeeEEEcCCCeEEE-eeE
Confidence 333 3477999998777 354
No 12
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=97.59 E-value=0.00024 Score=77.01 Aligned_cols=72 Identities=15% Similarity=0.239 Sum_probs=59.6
Q ss_pred eEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEEEEcceeceee
Q 007269 300 GTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYK 379 (610)
Q Consensus 300 GtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~ 379 (610)
.+|+|+|+..+ +.|..+|.|.+. +....+.||.+|.|.+. ++||+|+|.+...|+. .
T Consensus 298 ~~i~G~V~d~~------g~pl~~A~V~i~-------------~~~~~~~Td~~G~f~~~-l~~G~y~l~vs~~Gy~---~ 354 (374)
T cd03858 298 RGIKGFVRDAN------GNPIANATISVE-------------GINHDVTTAEDGDYWRL-LLPGTYNVTASAPGYE---P 354 (374)
T ss_pred CceEEEEECCC------CCccCCeEEEEe-------------cceeeeEECCCceEEEe-cCCEeEEEEEEEcCcc---e
Confidence 48999998876 789999999995 34457899999999986 7999999999999765 5
Q ss_pred eeeeEEEeC-Cceeee
Q 007269 380 YDFNITIIE-GSYIDI 394 (610)
Q Consensus 380 ~~~~VtV~a-G~t~~l 394 (610)
++.+|+|.. |+++.+
T Consensus 355 ~~~~v~v~~~g~~~~~ 370 (374)
T cd03858 355 QTKSVVVPNDNSAVVV 370 (374)
T ss_pred EEEEEEEecCCceEEE
Confidence 556788877 887766
No 13
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=97.24 E-value=0.00099 Score=73.07 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=57.4
Q ss_pred eEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEEEEcceeceee
Q 007269 300 GTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYK 379 (610)
Q Consensus 300 GtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~ 379 (610)
-.|+|+|+..+ +.|..+|.|.+.. ....+.||++|.|. .+++||+|+|.+...|+. .
T Consensus 318 ~~i~G~V~D~~------g~pi~~A~V~v~g-------------~~~~~~Td~~G~y~-~~l~~G~y~l~vs~~Gy~---~ 374 (395)
T cd03867 318 RGIKGFVKDKD------GNPIKGARISVRG-------------IRHDITTAEDGDYW-RLLPPGIHIVSAQAPGYT---K 374 (395)
T ss_pred ceeEEEEEcCC------CCccCCeEEEEec-------------cccceEECCCceEE-EecCCCcEEEEEEecCee---e
Confidence 36999999876 7899999999963 33478899999997 689999999999999875 5
Q ss_pred eeeeEEEeC--Cceeee
Q 007269 380 YDFNITIIE--GSYIDI 394 (610)
Q Consensus 380 ~~~~VtV~a--G~t~~l 394 (610)
...+|+|.+ ++...+
T Consensus 375 ~~~~v~v~~~~~~~~~~ 391 (395)
T cd03867 375 VMKRVTLPARMKRAGRV 391 (395)
T ss_pred EEEEEEeCCcCCCceEe
Confidence 556688865 444444
No 14
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=96.58 E-value=0.0089 Score=65.29 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=54.0
Q ss_pred CeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEEEEcceecee
Q 007269 299 RGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDY 378 (610)
Q Consensus 299 RGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~ 378 (610)
.+.|+|+|+... +.|..+|.|.+...+ ...-+.||++|.|.+. ++||+|+|.+.++|+.
T Consensus 294 ~~gI~G~V~D~~------g~pi~~A~V~v~g~~-----------~~~~~~T~~~G~y~~~-l~pG~Y~v~vsa~Gy~--- 352 (376)
T cd03866 294 HLGVKGQVFDSN------GNPIPNAIVEVKGRK-----------HICPYRTNVNGEYFLL-LLPGKYMINVTAPGFK--- 352 (376)
T ss_pred cCceEEEEECCC------CCccCCeEEEEEcCC-----------ceeEEEECCCceEEEe-cCCeeEEEEEEeCCcc---
Confidence 567999998654 789999999996432 1123469999999775 9999999999999875
Q ss_pred eeeeeEEEeCC
Q 007269 379 KYDFNITIIEG 389 (610)
Q Consensus 379 ~~~~~VtV~aG 389 (610)
....+|.|.+.
T Consensus 353 ~~~~~v~v~~~ 363 (376)
T cd03866 353 TVITNVIIPYN 363 (376)
T ss_pred eEEEEEEeCCC
Confidence 55566777754
No 15
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=95.41 E-value=0.083 Score=49.86 Aligned_cols=78 Identities=21% Similarity=0.180 Sum_probs=54.6
Q ss_pred EEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEEEEcceeceeee
Q 007269 301 TLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKY 380 (610)
Q Consensus 301 tVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~ 380 (610)
.|||.|.... |+|..++.+.|+.-... .+==.+.-=+..|++.|.|+|. +.||.|.++++..|.. ..+
T Consensus 4 ~ISGvL~dg~------G~pv~g~~I~L~A~~tS---~~Vv~~t~as~~t~~~G~Ys~~-~epG~Y~V~l~~~g~~--~~~ 71 (134)
T PF08400_consen 4 KISGVLKDGA------GKPVPGCTITLKARRTS---STVVVGTVASVVTGEAGEYSFD-VEPGVYRVTLKVEGRP--PVY 71 (134)
T ss_pred EEEEEEeCCC------CCcCCCCEEEEEEccCc---hheEEEEEEEEEcCCCceEEEE-ecCCeEEEEEEECCCC--cee
Confidence 5889888766 99999999999743320 0000123336788999999995 9999999999999754 123
Q ss_pred eeeEEEeCCc
Q 007269 381 DFNITIIEGS 390 (610)
Q Consensus 381 ~~~VtV~aG~ 390 (610)
-..|+|.+.+
T Consensus 72 vG~I~V~~dS 81 (134)
T PF08400_consen 72 VGDITVYEDS 81 (134)
T ss_pred EEEEEEecCC
Confidence 2457776443
No 16
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=95.32 E-value=0.041 Score=52.12 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=49.9
Q ss_pred CCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEe---CC-ccCCceEEEEEEcc
Q 007269 298 QRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYI---DH-IRTGNYSLYAFVPG 373 (610)
Q Consensus 298 qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI---~n-VrpGtY~L~a~~~G 373 (610)
+.+.|+++|+.... |+||.++.|-|..... ++|+ .-.-+.||++|+|.. .+ +.||.|.|..-..+
T Consensus 25 ~~~~Is~HVLDt~~-----G~PA~gV~V~L~~~~~-~~w~-----~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~ 93 (137)
T PRK15036 25 QQNILSVHILNQQT-----GKPAADVTVTLEKKAD-NGWL-----QLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGD 93 (137)
T ss_pred cCCCeEEEEEeCCC-----CcCCCCCEEEEEEccC-CceE-----EEEEEEECCCCCCccccCcccCCCeeEEEEEEcch
Confidence 44679999887653 8999999999975432 3453 234578999999986 34 88999999998764
Q ss_pred e
Q 007269 374 F 374 (610)
Q Consensus 374 ~ 374 (610)
.
T Consensus 94 Y 94 (137)
T PRK15036 94 Y 94 (137)
T ss_pred h
Confidence 3
No 17
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=94.39 E-value=0.27 Score=40.45 Aligned_cols=45 Identities=16% Similarity=0.372 Sum_probs=37.0
Q ss_pred cceEeCCccCCceEEEEEEcceeceeeeeeeEEEeCCceeeecceEEeC
Q 007269 353 GYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKP 401 (610)
Q Consensus 353 G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~lg~l~~~~ 401 (610)
...++..+++|.|+|.+..+|+. ..+..|.|.+|++..+ ++.+++
T Consensus 25 tp~~~~~l~~G~~~v~v~~~Gy~---~~~~~v~v~~~~~~~v-~~~L~~ 69 (71)
T PF08308_consen 25 TPLTLKDLPPGEHTVTVEKPGYE---PYTKTVTVKPGETTTV-NVTLEP 69 (71)
T ss_pred CcceeeecCCccEEEEEEECCCe---eEEEEEEECCCCEEEE-EEEEEE
Confidence 34578889999999999999765 5667799999999888 477753
No 18
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=93.59 E-value=0.16 Score=48.29 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=48.4
Q ss_pred CCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccc-------cceeEEEECCccceEeCCccCCceEE
Q 007269 298 QRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECK-------GYQFWARANADGYFYIDHIRTGNYSL 367 (610)
Q Consensus 298 qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~k-------gyQywt~td~~G~FtI~nVrpGtY~L 367 (610)
+.=+|.|+|+..+ +.|..+|.|-++.....|....+.. ..--...||++|.|.+.-|+||.|.+
T Consensus 10 ~~l~l~G~V~D~~------g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~ 80 (146)
T cd00421 10 EPLTLTGTVLDGD------GCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPI 80 (146)
T ss_pred CEEEEEEEEECCC------CCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCC
Confidence 3458999999887 8899999999977666553332211 22334789999999999999999995
No 19
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=93.57 E-value=0.52 Score=42.50 Aligned_cols=80 Identities=23% Similarity=0.372 Sum_probs=49.9
Q ss_pred cceEEEEEeeeccCC-ceeEEEEcCCCCCCCCcccccccCCCeeeeeeEeeeeEEEEEEeecCceecCCceEEEEEEecc
Q 007269 504 SAVYKLRLALASAHV-SVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGNNNTIYLTQALS 582 (610)
Q Consensus 504 ~~~~tLriala~a~~-~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~~NtI~lt~~~g 582 (610)
.+.|+|++..|.... ++++|+||+.+.. ...+..++. .+-.-.|...+..| .|.+|. |+|+|....+
T Consensus 44 ~g~y~~~~~~a~~~~~~~~~l~id~~~g~--~~~~~~~~~------tg~w~~~~~~~~~v---~l~~G~-h~i~l~~~~~ 111 (125)
T PF03422_consen 44 AGTYTLTIRYANGGGGGTIELRIDGPDGT--LIGTVSLPP------TGGWDTWQTVSVSV---KLPAGK-HTIYLVFNGG 111 (125)
T ss_dssp SEEEEEEEEEEESSSSEEEEEEETTTTSE--EEEEEEEE-------ESSTTEEEEEEEEE---EEESEE-EEEEEEESSS
T ss_pred CceEEEEEEEECCCCCcEEEEEECCCCCc--EEEEEEEcC------CCCccccEEEEEEE---eeCCCe-eEEEEEEECC
Confidence 578899888888644 7999999993321 112222221 11111234444444 466699 9999998776
Q ss_pred CCCCceEEEEEEEEe
Q 007269 583 GSPFRGVMYDYIRLE 597 (610)
Q Consensus 583 ~s~f~gvmyD~IrLe 597 (610)
.+ ..+-.|+|+|+
T Consensus 112 ~~--~~~niD~~~f~ 124 (125)
T PF03422_consen 112 DG--WAFNIDYFQFT 124 (125)
T ss_dssp SS--B-EEEEEEEEE
T ss_pred CC--ceEEeEEEEEE
Confidence 43 35889999886
No 20
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=93.34 E-value=0.2 Score=55.48 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=49.8
Q ss_pred CeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEEEEcceecee
Q 007269 299 RGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDY 378 (610)
Q Consensus 299 RGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~ 378 (610)
|| |+|.|+... |.|..+|.|.+..-.. ...|.++|.|-- =+.||+|+++|.++|+.
T Consensus 329 ~G-ikG~V~d~~------g~~i~~a~i~v~g~~~-------------~v~t~~~GdywR-ll~pG~y~v~~~a~gy~--- 384 (405)
T cd03869 329 RG-IKGVVRDKT------GKGIPNAIISVEGINH-------------DIRTASDGDYWR-LLNPGEYRVTAHAEGYT--- 384 (405)
T ss_pred cC-ceEEEECCC------CCcCCCcEEEEecCcc-------------ceeeCCCCceEE-ecCCceEEEEEEecCCC---
Confidence 54 899987765 7888999998864332 456678887644 28999999999999764
Q ss_pred eeeeeEEEeCC
Q 007269 379 KYDFNITIIEG 389 (610)
Q Consensus 379 ~~~~~VtV~aG 389 (610)
....+|+|..+
T Consensus 385 ~~~~~~~v~~~ 395 (405)
T cd03869 385 SSTKNCEVGYE 395 (405)
T ss_pred cccEEEEEcCC
Confidence 55566777754
No 21
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.33 Score=57.35 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=45.0
Q ss_pred eEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCC-ccCCceEEEEEEcc
Q 007269 300 GTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDH-IRTGNYSLYAFVPG 373 (610)
Q Consensus 300 GtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~n-VrpGtY~L~a~~~G 373 (610)
-+|+|||++.. .+.|..++.|.+- -+--.+||++|+|++.| +..|+||+.|-...
T Consensus 316 fSvtGRVl~g~-----~g~~l~gvvvlvn--------------gk~~~kTdaqGyykLen~~t~gtytI~a~keh 371 (1165)
T KOG1948|consen 316 FSVTGRVLVGS-----KGLPLSGVVVLVN--------------GKSGGKTDAQGYYKLENLKTDGTYTITAKKEH 371 (1165)
T ss_pred EEeeeeEEeCC-----CCCCccceEEEEc--------------CcccceEcccceEEeeeeeccCcEEEEEeccc
Confidence 47899988763 2788899988884 33367899999999999 99999999998764
No 22
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=92.32 E-value=0.62 Score=43.06 Aligned_cols=40 Identities=20% Similarity=0.494 Sum_probs=31.6
Q ss_pred eEEEECCccceEeCCccCCceEEEEEEcceeceeeeeeeEEEe
Q 007269 345 FWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITII 387 (610)
Q Consensus 345 ywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~ 387 (610)
+-+...++|.|.|.||++|+|.|.+-...+. |.. -.|.|.
T Consensus 22 ~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~--F~~-~RVdV~ 61 (123)
T PF09430_consen 22 ISAFVRSDGSFVFHNVPPGSYLLEVHSPDYV--FPP-YRVDVS 61 (123)
T ss_pred eEEEecCCCEEEeCCCCCceEEEEEECCCcc--ccC-EEEEEe
Confidence 3678899999999999999999999987643 222 346676
No 23
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=91.75 E-value=0.35 Score=48.09 Aligned_cols=63 Identities=24% Similarity=0.402 Sum_probs=49.1
Q ss_pred CCeEEEEEEEeccccccccccccCccEEEecCCCCCCCccccc-------ccceeE--EEECCccceEeCCccCCceE
Q 007269 298 QRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQREC-------KGYQFW--ARANADGYFYIDHIRTGNYS 366 (610)
Q Consensus 298 qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~-------kgyQyw--t~td~~G~FtI~nVrpGtY~ 366 (610)
..=.|+|+|+..+ ++|..+|.|=++.....|....+. ..++.| ..||++|.|++.-|+||-|.
T Consensus 35 ~~l~l~G~V~D~~------g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~ 106 (185)
T cd03463 35 ERITLEGRVYDGD------GAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVP 106 (185)
T ss_pred CEEEEEEEEECCC------CCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcC
Confidence 4568999998766 899999999998777767443211 345455 56999999999999999986
No 24
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=91.22 E-value=0.43 Score=46.22 Aligned_cols=64 Identities=25% Similarity=0.385 Sum_probs=49.4
Q ss_pred CCeEEEEEEEeccccccccccccCccEEEecCCCCCCCccccc--------ccceeE--EEECCccceEeCCccCCceEE
Q 007269 298 QRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQREC--------KGYQFW--ARANADGYFYIDHIRTGNYSL 367 (610)
Q Consensus 298 qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~--------kgyQyw--t~td~~G~FtI~nVrpGtY~L 367 (610)
++=.|+|+|+..+ +.|..+|.|=++.....|....+. .++..| ..||++|.|++.-|+||-|.+
T Consensus 14 ~~l~l~g~V~D~~------g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~ 87 (158)
T cd03459 14 ERIILEGRVLDGD------GRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPW 87 (158)
T ss_pred cEEEEEEEEECCC------CCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCC
Confidence 3567899998766 899999999998777766443322 345545 568999999999999999984
No 25
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=90.46 E-value=2.9 Score=36.57 Aligned_cols=62 Identities=24% Similarity=0.329 Sum_probs=47.7
Q ss_pred CCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEEEEcceec
Q 007269 298 QRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIG 376 (610)
Q Consensus 298 qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G 376 (610)
....|+|+++ .+ +.|..+|+|-|-+... .| -=-..++++|.|.+- ..||+.+|.+-..+-.|
T Consensus 6 ke~VItG~V~-~~------G~Pv~gAyVRLLD~sg--EF-------taEvvts~~G~FRFf-aapG~WtvRal~~~g~~ 67 (85)
T PF07210_consen 6 KETVITGRVT-RD------GEPVGGAYVRLLDSSG--EF-------TAEVVTSATGDFRFF-AAPGSWTVRALSRGGNG 67 (85)
T ss_pred ceEEEEEEEe-cC------CcCCCCeEEEEEcCCC--Ce-------EEEEEecCCccEEEE-eCCCceEEEEEccCCCC
Confidence 4578999999 66 7899999999975542 13 112457899999995 89999999998875443
No 26
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=90.35 E-value=0.92 Score=36.89 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=31.3
Q ss_pred EEECCccceEeCCccCCceEEEEEE--cceeceeeeeeeEEEeCCcee
Q 007269 347 ARANADGYFYIDHIRTGNYSLYAFV--PGFIGDYKYDFNITIIEGSYI 392 (610)
Q Consensus 347 t~td~~G~FtI~nVrpGtY~L~a~~--~G~~G~~~~~~~VtV~aG~t~ 392 (610)
..+|++|.|.+.+++||+|.|.--. .|+.- -.....++|..++..
T Consensus 21 ~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~-~~~~~~~~i~~~~~~ 67 (70)
T PF05738_consen 21 VTTDENGKYTFKNLPPGTYTLKETKAPDGYQL-DDTPYEFTITEDGDV 67 (70)
T ss_dssp EEGGTTSEEEEEEEESEEEEEEEEETTTTEEE-EECEEEEEECTTSCE
T ss_pred EEECCCCEEEEeecCCeEEEEEEEECCCCCEE-CCCceEEEEecCCEE
Confidence 5689999999999999999999876 44320 012233566665543
No 27
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=89.58 E-value=0.7 Score=47.96 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=48.8
Q ss_pred CCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccc---ccccee--EEEECCccceEeCCccCCceEE
Q 007269 298 QRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRE---CKGYQF--WARANADGYFYIDHIRTGNYSL 367 (610)
Q Consensus 298 qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~---~kgyQy--wt~td~~G~FtI~nVrpGtY~L 367 (610)
+.=.|+|+|+..+ |.|..+|.|=++....+|....+ .....+ +..||++|.|.+.-|+||-|-+
T Consensus 97 ~~l~v~G~V~D~~------G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~Ypi 165 (246)
T TIGR02465 97 KPLLIRGTVRDLS------GTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQI 165 (246)
T ss_pred cEEEEEEEEEcCC------CCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCCC
Confidence 4578999998766 89999999999877766644321 122333 5778999999999999999853
No 28
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.34 E-value=0.64 Score=47.63 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=50.3
Q ss_pred CCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccce-------eE--EEECCccceEeCCccCCceEEE
Q 007269 298 QRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQ-------FW--ARANADGYFYIDHIRTGNYSLY 368 (610)
Q Consensus 298 qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQ-------yw--t~td~~G~FtI~nVrpGtY~L~ 368 (610)
+|=.|+|+|+..+ |.|..+|.|=+++.+..|-.....+.+. =| +.||++|.|.+.-|+||.|--.
T Consensus 71 e~i~l~G~VlD~~------G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~~ 144 (226)
T COG3485 71 ERILLEGRVLDGN------GRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPWR 144 (226)
T ss_pred ceEEEEEEEECCC------CCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccCC
Confidence 7889999999888 9999999999987776664442222222 23 6689999999999999998543
No 29
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=89.15 E-value=0.77 Score=45.98 Aligned_cols=65 Identities=22% Similarity=0.408 Sum_probs=49.0
Q ss_pred CCCeEEEEEEEeccccccccccccCccEEEecCCCCCCCccccc--------ccceeE--EEECCccceEeCCccCCceE
Q 007269 297 DQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQREC--------KGYQFW--ARANADGYFYIDHIRTGNYS 366 (610)
Q Consensus 297 ~qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~--------kgyQyw--t~td~~G~FtI~nVrpGtY~ 366 (610)
.++=.|+|+|+..+ +.|..+|.|=+++....|-...+. .+++-| ..||++|.|++.-|+||.|.
T Consensus 37 G~~l~l~G~V~D~~------g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp 110 (193)
T TIGR02423 37 GERIRLEGRVLDGD------GHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVP 110 (193)
T ss_pred CCEEEEEEEEECCC------CCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcC
Confidence 34678999998665 899999999998777666433211 244444 46899999999999999886
Q ss_pred E
Q 007269 367 L 367 (610)
Q Consensus 367 L 367 (610)
.
T Consensus 111 ~ 111 (193)
T TIGR02423 111 D 111 (193)
T ss_pred C
Confidence 4
No 30
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=88.96 E-value=1.1 Score=46.47 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=47.3
Q ss_pred CCCeEEEEEEEeccccccccccccCccEEEecCCCCCCCccccc---cccee--EEEECCccceEeCCccCCceE
Q 007269 297 DQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQREC---KGYQF--WARANADGYFYIDHIRTGNYS 366 (610)
Q Consensus 297 ~qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~---kgyQy--wt~td~~G~FtI~nVrpGtY~ 366 (610)
.++=.|+|+|+..+ |.|..+|.|=+++....|....+. ....+ ...||++|.|.+.-|+||.|-
T Consensus 97 G~~l~l~G~V~D~~------G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~Yp 165 (247)
T cd03462 97 HKPLLFRGTVKDLA------GAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPYQ 165 (247)
T ss_pred CCEEEEEEEEEcCC------CCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCcC
Confidence 34678999998766 899999999997766666332211 11111 467899999999999999994
No 31
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=88.93 E-value=0.87 Score=45.16 Aligned_cols=64 Identities=25% Similarity=0.376 Sum_probs=41.0
Q ss_pred CCeEEEEEEEeccccccccccccCccEEEecCCCCCCCccccc-------ccceeEEEECCccceEeCCccCCceEE
Q 007269 298 QRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQREC-------KGYQFWARANADGYFYIDHIRTGNYSL 367 (610)
Q Consensus 298 qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~-------kgyQywt~td~~G~FtI~nVrpGtY~L 367 (610)
+.=.|.|+|+..+ +.|..+|.|=++.....|....+. ....=+..||++|.|++.-|+||.|.+
T Consensus 28 ~~l~l~G~V~D~~------g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~ 98 (183)
T PF00775_consen 28 EPLVLHGRVIDTD------GKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFRTIKPGPYPI 98 (183)
T ss_dssp -EEEEEEEEEETT------SSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEEEE----EEE
T ss_pred CEEEEEEEEECCC------CCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEEeeCCCCCCC
Confidence 3558999999877 899999999998766666332211 123334778999999999999999975
No 32
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=88.27 E-value=0.65 Score=37.29 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=22.6
Q ss_pred EEEECCcc-ceEeCCccCCceEEEEEEcc
Q 007269 346 WARANADG-YFYIDHIRTGNYSLYAFVPG 373 (610)
Q Consensus 346 wt~td~~G-~FtI~nVrpGtY~L~a~~~G 373 (610)
|..+.... .+++.+++||+|+|.|.+..
T Consensus 21 W~~~~~~~~~~~~~~L~~G~Y~l~V~a~~ 49 (66)
T PF07495_consen 21 WITLGSYSNSISYTNLPPGKYTLEVRAKD 49 (66)
T ss_dssp EEEESSTS-EEEEES--SEEEEEEEEEEE
T ss_pred EEECCCCcEEEEEEeCCCEEEEEEEEEEC
Confidence 77777777 99999999999999999753
No 33
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=87.76 E-value=1.3 Score=45.33 Aligned_cols=65 Identities=25% Similarity=0.412 Sum_probs=49.1
Q ss_pred CCCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccc--------cccceeE--EEECCccceEeCCccCCceE
Q 007269 297 DQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRE--------CKGYQFW--ARANADGYFYIDHIRTGNYS 366 (610)
Q Consensus 297 ~qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~--------~kgyQyw--t~td~~G~FtI~nVrpGtY~ 366 (610)
.++=.|+|+|...+ |.|..+|.|=+++....|-...+ ..+++.+ ..||++|.|.+.-|+||.|.
T Consensus 63 G~~i~l~G~V~D~~------G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp 136 (220)
T cd03464 63 GERIIVHGRVLDED------GRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYP 136 (220)
T ss_pred CCEEEEEEEEECCC------CCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCcc
Confidence 45678999999766 89999999999877666633321 1234433 46799999999999999995
Q ss_pred E
Q 007269 367 L 367 (610)
Q Consensus 367 L 367 (610)
+
T Consensus 137 ~ 137 (220)
T cd03464 137 W 137 (220)
T ss_pred C
Confidence 4
No 34
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=87.63 E-value=1.4 Score=50.95 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=54.6
Q ss_pred ceEEEEEEecCCCCcceEEEEEeeecc-----CCceeEEEEcCCCCCCCCcccccccCCCeeeeeeEeeeeEEEEEEeec
Q 007269 490 TTWQIKFELDNVNESAVYKLRLALASA-----HVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPG 564 (610)
Q Consensus 490 ~~w~I~F~L~~~~~~~~~tLriala~a-----~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa 564 (610)
..-.|.|.+...+....++|+|.+.-+ ..+.++|.|||..+. +..+..++. .-...+|+||.
T Consensus 29 ~~~~~~f~v~~~~~v~~a~L~L~~~~S~~l~~~~S~L~V~lNg~~v~-----s~~l~~~~~--------~~~~~~i~Ip~ 95 (605)
T PF03170_consen 29 ASRTIYFPVPADWVVTKATLNLSYTYSPSLLPERSQLTVSLNGQPVG-----SIPLDAESA--------QPQTVTIPIPP 95 (605)
T ss_pred CceEEEEEcCCCccccceEEEEEEEECcccCCCcceEEEEECCEEeE-----EEecCcCCC--------CceEEEEecCh
Confidence 455677777776655567777777664 236899999998654 222332222 24678999999
Q ss_pred CceecCCceEEEEEEecc
Q 007269 565 ALFVKGNNNTIYLTQALS 582 (610)
Q Consensus 565 ~~L~~G~~NtI~lt~~~g 582 (610)
. |..|. |.|.|.....
T Consensus 96 ~-l~~g~-N~l~~~~~~~ 111 (605)
T PF03170_consen 96 A-LIKGF-NRLTFEFIGH 111 (605)
T ss_pred h-hcCCc-eEEEEEEEec
Confidence 9 99999 9999997643
No 35
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=87.63 E-value=1.3 Score=45.31 Aligned_cols=67 Identities=24% Similarity=0.394 Sum_probs=49.4
Q ss_pred CCCCCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccc--------cccceeE--EEECCccceEeCCccCCc
Q 007269 295 QSDQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRE--------CKGYQFW--ARANADGYFYIDHIRTGN 364 (610)
Q Consensus 295 ~~~qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~--------~kgyQyw--t~td~~G~FtI~nVrpGt 364 (610)
+..++=.|+|+|+..+ |.|..+|.|=+++....|....+ ..++.-+ ..||++|.|.+.-|+||-
T Consensus 56 ~~G~~i~l~G~V~D~~------g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~ 129 (220)
T TIGR02422 56 PIGERIIVHGRVLDED------GRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGP 129 (220)
T ss_pred CCCCEEEEEEEEECCC------CCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCC
Confidence 3346788999999766 89999999999876666633322 1233323 458999999999999999
Q ss_pred eEE
Q 007269 365 YSL 367 (610)
Q Consensus 365 Y~L 367 (610)
|..
T Consensus 130 Y~~ 132 (220)
T TIGR02422 130 YPW 132 (220)
T ss_pred ccC
Confidence 854
No 36
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=86.51 E-value=2.5 Score=44.23 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=48.9
Q ss_pred CCCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccc---cccceeE--EEECCccceEeCCccCCceEE
Q 007269 297 DQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRE---CKGYQFW--ARANADGYFYIDHIRTGNYSL 367 (610)
Q Consensus 297 ~qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~---~kgyQyw--t~td~~G~FtI~nVrpGtY~L 367 (610)
.++=.|+|+|...+ |.|..+|.|=++.....|....+ ......+ ..||++|.|.+.-|+||-|-+
T Consensus 102 G~~l~l~G~V~D~~------G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypi 171 (256)
T cd03458 102 GEPLFVHGTVTDTD------GKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPI 171 (256)
T ss_pred CcEEEEEEEEEcCC------CCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccC
Confidence 45668999999777 89999999999877666633321 2233333 568999999999999999954
No 37
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=84.84 E-value=11 Score=34.24 Aligned_cols=89 Identities=20% Similarity=0.378 Sum_probs=49.3
Q ss_pred ceEEEEEE-ecCCCCcceEEEEEeeecc-CCceeEEEEcCCCCCCCCcccccccCCCeeeeeeEeeeeEEEEEEeecCce
Q 007269 490 TTWQIKFE-LDNVNESAVYKLRLALASA-HVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALF 567 (610)
Q Consensus 490 ~~w~I~F~-L~~~~~~~~~tLriala~a-~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L 567 (610)
+.| |.|+ ++-. ..+.+++.|..+.. ..+.++|++++.+.. ...+..++.... --.+...+.+|+ |
T Consensus 39 g~w-~~y~~vd~~-~~g~~~i~~~~as~~~~~~i~v~~d~~~G~--~~~~~~~p~tg~------~~~~~~~~~~v~---~ 105 (129)
T smart00606 39 GDW-IAYKDVDFG-SSGAYTFTARVASGNAGGSIELRLDSPTGT--LVGTVDVPSTGG------WQTYQTVSATVT---L 105 (129)
T ss_pred CCE-EEEEeEecC-CCCceEEEEEEeCCCCCceEEEEECCCCCc--EEEEEEeCCCCC------CccCEEEEEEEc---c
Confidence 444 5555 4322 24677887777765 345899999975432 112223322111 012334444443 4
Q ss_pred ecCCceEEEEEEeccCCCCceEEEEEEEE
Q 007269 568 VKGNNNTIYLTQALSGSPFRGVMYDYIRL 596 (610)
Q Consensus 568 ~~G~~NtI~lt~~~g~s~f~gvmyD~IrL 596 (610)
.+|. ++|+|....++ . +..|.+++
T Consensus 106 ~~G~-~~l~~~~~~~~-~---~~ld~~~F 129 (129)
T smart00606 106 PAGV-HDVYLVFKGGN-Y---FNIDWFRF 129 (129)
T ss_pred CCce-EEEEEEEECCC-c---EEEEEEEC
Confidence 4899 99999876532 2 77777653
No 38
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=84.55 E-value=1.8 Score=45.88 Aligned_cols=65 Identities=18% Similarity=0.278 Sum_probs=49.5
Q ss_pred CCCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcc--cc-cccceeE--EEECCccceEeCCccCCceEE
Q 007269 297 DQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQ--RE-CKGYQFW--ARANADGYFYIDHIRTGNYSL 367 (610)
Q Consensus 297 ~qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq--~~-~kgyQyw--t~td~~G~FtI~nVrpGtY~L 367 (610)
.++=.|+|+|+..+ |.|..+|.|=++.....|... +. ..+++.+ ..||++|.|.+.-|+||-|-+
T Consensus 122 Gepl~l~G~V~D~~------G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~Ypi 191 (282)
T cd03460 122 GETLVMHGTVTDTD------GKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGV 191 (282)
T ss_pred CCEEEEEEEEECCC------CCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcC
Confidence 45678999999776 899999999998777767443 21 2233333 668999999999999999953
No 39
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=84.38 E-value=1.5 Score=46.35 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=47.4
Q ss_pred CCCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccc---cccceeE--EEECCccceEeCCccCCceEE
Q 007269 297 DQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRE---CKGYQFW--ARANADGYFYIDHIRTGNYSL 367 (610)
Q Consensus 297 ~qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~---~kgyQyw--t~td~~G~FtI~nVrpGtY~L 367 (610)
.++=.|+|+|...+ |.|..+|.|-++.....|....+ .....+. ..||++|.|.+.-|+||-|-+
T Consensus 130 G~pl~v~G~V~D~~------G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~Ypi 199 (281)
T TIGR02438 130 GTPLVFSGQVTDLD------GNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAPYQI 199 (281)
T ss_pred CCEEEEEEEEEcCC------CCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 34678999998766 89999999999766665633211 1122233 568999999999999999964
No 40
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=83.93 E-value=2.1 Score=45.43 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=49.1
Q ss_pred CCCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcc--cc-cccceeE--EEECCccceEeCCccCCceEE
Q 007269 297 DQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQ--RE-CKGYQFW--ARANADGYFYIDHIRTGNYSL 367 (610)
Q Consensus 297 ~qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq--~~-~kgyQyw--t~td~~G~FtI~nVrpGtY~L 367 (610)
.++=.|+|+|+..+ |.|..+|.|=++.....|... +. ..+++.+ ..||++|.|.+.-|+||-|-+
T Consensus 126 G~pl~v~G~V~D~~------G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~Ypi 195 (285)
T TIGR02439 126 GETLFLHGQVTDAD------GKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGC 195 (285)
T ss_pred CcEEEEEEEEECCC------CCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcC
Confidence 34568999998766 899999999998777767432 21 2334444 568999999999999999853
No 41
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=83.50 E-value=2.6 Score=50.21 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=42.0
Q ss_pred EEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEEEEcc
Q 007269 301 TLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPG 373 (610)
Q Consensus 301 tVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a~~~G 373 (610)
+|+|+|.+.. +-++.++-|-|-... +--=-|.|+++|.|.+.+|.||+|.+.|..+.
T Consensus 120 sv~GkVlgaa------ggGpagV~velrs~e----------~~iast~T~~~Gky~f~~iiPG~Yev~ashp~ 176 (1165)
T KOG1948|consen 120 SVRGKVLGAA------GGGPAGVLVELRSQE----------DPIASTKTEDGGKYEFRNIIPGKYEVSASHPA 176 (1165)
T ss_pred eEeeEEeecc------CCCcccceeeccccc----------CcceeeEecCCCeEEEEecCCCceEEeccCcc
Confidence 6788887765 334556667665331 12225889999999999999999999998764
No 42
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=82.36 E-value=2.6 Score=44.53 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=48.6
Q ss_pred CCCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccc---cccceeE--EEECCccceEeCCccCCceEE
Q 007269 297 DQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRE---CKGYQFW--ARANADGYFYIDHIRTGNYSL 367 (610)
Q Consensus 297 ~qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~---~kgyQyw--t~td~~G~FtI~nVrpGtY~L 367 (610)
.++=.|+|+|...+ |.|..+|.|=++.....|....+ ..+...+ ..||++|.|.+.-|+||-|-+
T Consensus 118 G~~l~v~G~V~D~~------G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypi 187 (277)
T cd03461 118 GEPCFVHGRVTDTD------GKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYPI 187 (277)
T ss_pred CCEEEEEEEEEcCC------CCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 45678999999777 89999999999876666633221 1222333 568999999999999999975
No 43
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=82.16 E-value=35 Score=34.64 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=33.8
Q ss_pred ceeEEEECCc-cceEeCCccCCceEEEEEEcc--eec----eeeeeeeEEEeCCceeeecceEEe
Q 007269 343 YQFWARANAD-GYFYIDHIRTGNYSLYAFVPG--FIG----DYKYDFNITIIEGSYIDIGDLVYK 400 (610)
Q Consensus 343 yQywt~td~~-G~FtI~nVrpGtY~L~a~~~G--~~G----~~~~~~~VtV~aG~t~~lg~l~~~ 400 (610)
.++|..++-. +.+ -+++|+|+|.|+... ..| .|.-+.+++|.+|+++.+. |+-.
T Consensus 47 ~~~~~~~~~~~~~i---~L~~G~Ytv~A~~g~~~~~~~d~pyy~G~~~f~I~~g~~t~v~-v~C~ 107 (235)
T PF14900_consen 47 VKYWKYSEMPGESI---ELPVGSYTVKASYGDNVAAGFDKPYYEGSTTFTIEKGETTTVS-VTCK 107 (235)
T ss_pred EEecchhccccceE---eecCCcEEEEEEcCCCccccccCceeecceeEEEecCCcEEEE-EEEE
Confidence 3444444444 333 367899999999422 112 2445668999999998773 6543
No 44
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=79.94 E-value=4.2 Score=37.38 Aligned_cols=50 Identities=24% Similarity=0.149 Sum_probs=36.7
Q ss_pred ccccCccEEEecCCCCCCCcccccccceeEEEECCccceE-----eCCccCCceEEEEEEc
Q 007269 317 YIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFY-----IDHIRTGNYSLYAFVP 372 (610)
Q Consensus 317 ~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~Ft-----I~nVrpGtY~L~a~~~ 372 (610)
|+||+++.|-|..... +.|+ .---++||++|+.. ...+.||.|+|..-..
T Consensus 13 G~PAagv~V~L~~~~~-~~~~-----~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g 67 (112)
T TIGR02962 13 GKPAAGVPVTLYRLDG-SGWT-----PLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTG 67 (112)
T ss_pred CccCCCCEEEEEEecC-CCeE-----EEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhh
Confidence 8999999999964321 1243 23346799999987 4567899999999764
No 45
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=78.88 E-value=3.1 Score=49.67 Aligned_cols=75 Identities=21% Similarity=0.212 Sum_probs=48.2
Q ss_pred EEEEEecCCCCcceEEEEEeeecc-----CCceeEEEEcCCCCCCCCcccccccCCCeeeeeeEeeeeEEEEEEeecCce
Q 007269 493 QIKFELDNVNESAVYKLRLALASA-----HVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALF 567 (610)
Q Consensus 493 ~I~F~L~~~~~~~~~tLriala~a-----~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L 567 (610)
+|.|.+...+....++|+|...-+ ..++++|.|||..+. +..+..++ .|.-...+|+||+. |
T Consensus 84 ~i~f~vp~d~~v~~A~L~L~y~~Sp~l~~~~S~L~V~lNg~~v~-----s~pL~~~~-------~~~~~~~~i~IP~~-l 150 (756)
T PRK11114 84 GIEFGVRSDEVVTKARLNLEYTYSPALLPDLSHLKVYLNGELMG-----TLPLDKEQ-------LGKKVLAQLPIDPR-F 150 (756)
T ss_pred eeEeecCccccccCcEEEEEEEECCCCCCCCCeEEEEECCEEeE-----EEecCccc-------CCCcceeEEecCHH-H
Confidence 666666665543445555554443 347899999998654 12222111 24457889999994 6
Q ss_pred ecCCceEEEEEEec
Q 007269 568 VKGNNNTIYLTQAL 581 (610)
Q Consensus 568 ~~G~~NtI~lt~~~ 581 (610)
..|. |.|.|....
T Consensus 151 ~~g~-N~L~~~~~~ 163 (756)
T PRK11114 151 ITDF-NRLRLEFIG 163 (756)
T ss_pred cCCC-ceEEEEEec
Confidence 6899 999998653
No 46
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=78.66 E-value=7.6 Score=43.84 Aligned_cols=77 Identities=10% Similarity=0.201 Sum_probs=53.8
Q ss_pred eEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccce-EeCCccCCceEEEEEEcceecee
Q 007269 300 GTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYF-YIDHIRTGNYSLYAFVPGFIGDY 378 (610)
Q Consensus 300 GtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~F-tI~nVrpGtY~L~a~~~G~~G~~ 378 (610)
--|+|-|.... |.|..+|+|-+..-..+ .+|..+|.| .+ ..||.|.|+|.+.|+.
T Consensus 378 ~GIkG~V~D~~------G~~I~NA~IsV~ginHd-------------v~T~~~GDYWRL--L~PG~y~vta~A~Gy~--- 433 (500)
T KOG2649|consen 378 RGIKGLVFDDT------GNPIANATISVDGINHD-------------VTTAKEGDYWRL--LPPGKYIITASAEGYD--- 433 (500)
T ss_pred hccceeEEcCC------CCccCceEEEEecCcCc-------------eeecCCCceEEe--eCCcceEEEEecCCCc---
Confidence 34889888755 89999999999754431 234455643 44 7899999999999764
Q ss_pred eeeeeEEEeCCceeeecceEEeC
Q 007269 379 KYDFNITIIEGSYIDIGDLVYKP 401 (610)
Q Consensus 379 ~~~~~VtV~aG~t~~lg~l~~~~ 401 (610)
....+|+|..-..+.. ++++..
T Consensus 434 ~~tk~v~V~~~~a~~~-df~L~~ 455 (500)
T KOG2649|consen 434 PVTKTVTVPPDRAARV-NFTLQR 455 (500)
T ss_pred ceeeEEEeCCCCccce-eEEEec
Confidence 5556788886333334 577764
No 47
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=78.55 E-value=5.7 Score=38.94 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=47.5
Q ss_pred CeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEEEE
Q 007269 299 RGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFV 371 (610)
Q Consensus 299 RGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a~~ 371 (610)
-..++.+|+- + |+|..++.|.+...+. |. +........+||++|.++|+=-+||.|-|.+-.
T Consensus 150 g~~~~~~vl~-~------GkPl~~a~V~~~~~~~---~~-~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~ 211 (215)
T PF10670_consen 150 GDPLPFQVLF-D------GKPLAGAEVEAFSPGG---WY-DVEHEAKTLKTDANGRATFTLPRPGLWLIRASH 211 (215)
T ss_pred CCEEEEEEEE-C------CeEcccEEEEEEECCC---cc-ccccceEEEEECCCCEEEEecCCCEEEEEEEEE
Confidence 3568888884 5 7999999999976553 21 111227789999999999998899999998854
No 48
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=77.91 E-value=5.4 Score=37.69 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=45.4
Q ss_pred EEEEEEecCCCCcceEEEEEeeeccCCceeEEEEcCCCCCCCCcccccccCCCeeeeeeEeeeeEEEEEEeecCceecCC
Q 007269 492 WQIKFELDNVNESAVYKLRLALASAHVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGN 571 (610)
Q Consensus 492 w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 571 (610)
.+=+|+|++......+.|++.... ....|.|||..+. ...+.+..++++|+. .|+.|.
T Consensus 72 Yr~~f~lp~~~~~~~~~L~f~gv~---~~a~v~vNG~~vg------------------~~~~~~~~~~~dIt~-~l~~g~ 129 (167)
T PF02837_consen 72 YRRTFTLPADWKGKRVFLRFEGVD---YAAEVYVNGKLVG------------------SHEGGYTPFEFDITD-YLKPGE 129 (167)
T ss_dssp EEEEEEESGGGTTSEEEEEESEEE---SEEEEEETTEEEE------------------EEESTTS-EEEECGG-GSSSEE
T ss_pred EEEEEEeCchhcCceEEEEeccce---EeeEEEeCCeEEe------------------eeCCCcCCeEEeChh-hccCCC
Confidence 344688877553334555554333 5678999997442 123557789999975 788776
Q ss_pred ceEEEEEEecc
Q 007269 572 NNTIYLTQALS 582 (610)
Q Consensus 572 ~NtI~lt~~~g 582 (610)
+|+|.+.+.+.
T Consensus 130 ~N~l~V~v~~~ 140 (167)
T PF02837_consen 130 ENTLAVRVDNW 140 (167)
T ss_dssp EEEEEEEEESS
T ss_pred CEEEEEEEeec
Confidence 69999999864
No 49
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=76.09 E-value=11 Score=34.28 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=35.5
Q ss_pred EEEE-EeeeccCCceeEEEEcCCCCCCCCcccccccCCCeeeeeeEeeeeEEEEEEeecCceecCCceEEEEEEe
Q 007269 507 YKLR-LALASAHVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGNNNTIYLTQA 580 (610)
Q Consensus 507 ~tLr-iala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~~NtI~lt~~ 580 (610)
..|+ |........+.+|.|||+.++. +.++ ..-..+|.||.+.|+.++ |.|.+-+.
T Consensus 50 ~~~~~l~~~~g~~~~~~vwVNG~~~G~--------------~~~~---~g~q~tf~~p~~il~~~n-~v~~vl~~ 106 (111)
T PF13364_consen 50 TSLTPLNIQGGNAFRASVWVNGWFLGS--------------YWPG---IGPQTTFSVPAGILKYGN-NVLVVLWD 106 (111)
T ss_dssp EEEE-EEECSSTTEEEEEEETTEEEEE--------------EETT---TECCEEEEE-BTTBTTCE-EEEEEEEE
T ss_pred eeEEEEeccCCCceEEEEEECCEEeee--------------ecCC---CCccEEEEeCceeecCCC-EEEEEEEe
Confidence 4455 5555567779999999986541 0001 111289999999999875 76655543
No 50
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=75.98 E-value=2.6 Score=38.68 Aligned_cols=51 Identities=25% Similarity=0.232 Sum_probs=35.9
Q ss_pred ccccCccEEEecCCCCCCCcccccccceeEEEECCccce-----EeCCccCCceEEEEEEc
Q 007269 317 YIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYF-----YIDHIRTGNYSLYAFVP 372 (610)
Q Consensus 317 ~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~F-----tI~nVrpGtY~L~a~~~ 372 (610)
|+||+++-|-|.....+++|+ --.-+.||++|+. .-..+.+|.|.|..-+.
T Consensus 13 G~PA~gv~V~L~~~~~~~~~~-----~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~ 68 (112)
T PF00576_consen 13 GKPAAGVPVTLYRLDSDGSWT-----LLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTG 68 (112)
T ss_dssp TEE-TT-EEEEEEEETTSCEE-----EEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHH
T ss_pred CCCccCCEEEEEEecCCCCcE-----EEEEEEECCCCcccccccccccccceEEEEEEEHH
Confidence 899999999997544344564 3345779999988 34678899999998763
No 51
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=74.57 E-value=5.6 Score=36.67 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=36.6
Q ss_pred ccccCccEEEecCCCCCCCcccccccceeEEEECCccceEe----CCccCCceEEEEEEc
Q 007269 317 YIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYI----DHIRTGNYSLYAFVP 372 (610)
Q Consensus 317 ~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI----~nVrpGtY~L~a~~~ 372 (610)
|+||+++-|-|.....+++|+ .---++||+||+..- ..+.+|.|+|..-..
T Consensus 13 G~PAagv~V~L~~~~~~~~w~-----~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~t~ 67 (113)
T cd05469 13 GSPAANVAIKVFRKTADGSWE-----IFATGKTNEDGELHGLITEEEFXAGVYRVEFDTK 67 (113)
T ss_pred CccCCCCEEEEEEecCCCceE-----EEEEEEECCCCCccCccccccccceEEEEEEehH
Confidence 899999999996432223453 233467999999852 356889999998763
No 52
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=73.44 E-value=8.4 Score=35.96 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=44.0
Q ss_pred CeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceE----eCCccCCceEEEEEEc
Q 007269 299 RGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFY----IDHIRTGNYSLYAFVP 372 (610)
Q Consensus 299 RGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~Ft----I~nVrpGtY~L~a~~~ 372 (610)
|-.|+=.|+.... |+||+++.|-|......++|+ ..--++||++|+.. -..+.+|.|+|..-..
T Consensus 6 ~~~ittHVLDt~~-----G~PAaGV~V~L~~~~~~~~w~-----~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg 73 (121)
T cd05821 6 KCPLMVKVLDAVR-----GSPAANVAVKVFKKTADGSWE-----PFASGKTTETGEIHGLTTDEQFTEGVYKVEFDTK 73 (121)
T ss_pred CCCcEEEEEECCC-----CccCCCCEEEEEEecCCCceE-----EEEEEEECCCCCCCCccCccccCCeeEEEEEehh
Confidence 5667777665542 899999999995422113453 33457899999875 2346789999998663
No 53
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=67.50 E-value=10 Score=43.98 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=52.5
Q ss_pred CceEEEEEEecCCC---CcceEEEEEeeecc-----CCceeEEEEcCCCCCCCCcccccccCCCeeeeeeEeeeeEEEEE
Q 007269 489 GTTWQIKFELDNVN---ESAVYKLRLALASA-----HVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNV 560 (610)
Q Consensus 489 ~~~w~I~F~L~~~~---~~~~~tLriala~a-----~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~ 560 (610)
..+..+.|.|+..- .....+|.+..+.+ ..+++.|.|||.-+. +..+.+ +-.+....+++
T Consensus 323 ~~~~~~~f~lP~dl~~~~~~~i~l~L~y~y~~~~~~~~S~l~V~vNg~~i~-----s~~L~~-------~~~~~~~~~~v 390 (605)
T PF03170_consen 323 PQPISFNFRLPPDLFAWDGSGIPLHLRYRYTPGLDFDGSRLTVYVNGQFIG-----SLPLTP-------ADGAGFDRYTV 390 (605)
T ss_pred CCcceeEeeCCccccccCCCceEEEEEEecCCCCCCCCcEEEEEECCEEEE-----eEECCC-------CCCCccceeEE
Confidence 35677888886632 22345555555544 357899999998654 122221 33345688999
Q ss_pred EeecCceecCCceEEEEEEec
Q 007269 561 DVPGALFVKGNNNTIYLTQAL 581 (610)
Q Consensus 561 ~ipa~~L~~G~~NtI~lt~~~ 581 (610)
.|| ..++.|. |.|.|....
T Consensus 391 ~iP-~~~~~~~-N~l~~~f~l 409 (605)
T PF03170_consen 391 SIP-RLLLPGR-NQLQFEFDL 409 (605)
T ss_pred ecC-chhcCCC-cEEEEEEEe
Confidence 999 9999999 999888643
No 54
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=65.56 E-value=14 Score=33.93 Aligned_cols=50 Identities=24% Similarity=0.199 Sum_probs=36.6
Q ss_pred ccccCccEEEecCCCCCCCcccccccceeEEEECCccceEe-----CCccCCceEEEEEEc
Q 007269 317 YIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYI-----DHIRTGNYSLYAFVP 372 (610)
Q Consensus 317 ~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI-----~nVrpGtY~L~a~~~ 372 (610)
|+||+++-|-|..... ++|+ .-.-++||++|+..- ..+.+|+|.|..-..
T Consensus 13 G~PAagv~V~L~~~~~-~~~~-----~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~ 67 (112)
T cd05822 13 GKPAAGVAVTLYRLDG-NGWT-----LLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTG 67 (112)
T ss_pred CcccCCCEEEEEEecC-CCeE-----EEEEEEECCCCCccCcccccccCCCeeEEEEEEhh
Confidence 8999999999964332 1242 233477999999753 458899999999764
No 55
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=65.14 E-value=23 Score=33.11 Aligned_cols=66 Identities=29% Similarity=0.338 Sum_probs=44.9
Q ss_pred eEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEe-----CCccCCceEEEEEEcce
Q 007269 300 GTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYI-----DHIRTGNYSLYAFVPGF 374 (610)
Q Consensus 300 GtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI-----~nVrpGtY~L~a~~~G~ 374 (610)
|.++=.|+... .|+||.++.|.|..-..+ .|+ ----+.||.||+-.- ..+++|.|.|..-+
T Consensus 9 G~LTTHVLDta-----~GkPAagv~V~L~rl~~~-~~~-----~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~--- 74 (124)
T COG2351 9 GRLTTHVLDTA-----SGKPAAGVKVELYRLEGN-QWE-----LLKTVVTNADGRIDAPLLAGETLATGIYELVFHT--- 74 (124)
T ss_pred ceeeeeeeecc-----cCCcCCCCEEEEEEecCC-cce-----eeeEEEecCCCcccccccCccccccceEEEEEEc---
Confidence 56666666554 389999999999643332 343 122467899998763 46789999999865
Q ss_pred eceeee
Q 007269 375 IGDYKY 380 (610)
Q Consensus 375 ~G~~~~ 380 (610)
|||-.
T Consensus 75 -gdYf~ 79 (124)
T COG2351 75 -GDYFK 79 (124)
T ss_pred -chhhh
Confidence 66553
No 56
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=61.29 E-value=20 Score=35.86 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=43.4
Q ss_pred eEEEEEEEeccccccccccccCccEEEecCCCCCCCcccc---c------ccce-e--EEEECCccceEeCCccCCceE
Q 007269 300 GTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRE---C------KGYQ-F--WARANADGYFYIDHIRTGNYS 366 (610)
Q Consensus 300 GtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~---~------kgyQ-y--wt~td~~G~FtI~nVrpGtY~ 366 (610)
=.+.|+|...+ .+.|..+|.|=++.....|..... . .+.. . +..||++|.|++.-|.||-|.
T Consensus 27 l~l~g~V~D~~-----~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y~ 100 (188)
T cd03457 27 LTLDLQVVDVA-----TCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWYP 100 (188)
T ss_pred EEEEEEEEeCC-----CCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCCC
Confidence 47888887643 268999999999876665633221 1 1111 2 366899999999999999885
No 57
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=58.29 E-value=50 Score=29.24 Aligned_cols=69 Identities=19% Similarity=0.208 Sum_probs=36.6
Q ss_pred CCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccc--eEeCCccCCceEEEEEEcce
Q 007269 298 QRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGY--FYIDHIRTGNYSLYAFVPGF 374 (610)
Q Consensus 298 qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~--FtI~nVrpGtY~L~a~~~G~ 374 (610)
....+.=++++.| ..|.|..+..|-+......+... .... -+.||++|. +++..-++|+|++.|.+.|-
T Consensus 21 g~~~~tltatV~D----~~gnpv~g~~V~f~~~~~~~~l~--~~~~--~~~Td~~G~a~~tltst~aG~~~VtA~~~~~ 91 (100)
T PF02369_consen 21 GSDTNTLTATVTD----ANGNPVPGQPVTFSSSSSGGTLS--PTNT--SATTDSNGIATVTLTSTKAGTYTVTATVDGG 91 (100)
T ss_dssp SSS-EEEEEEEEE----TTSEB-TS-EEEE--EESSSEES---CEE---EEE-TTSEEEEEEE-SS-EEEEEEEEETTE
T ss_pred CcCcEEEEEEEEc----CCCCCCCCCEEEEEEcCCCcEEe--cCcc--ccEECCCEEEEEEEEecCceEEEEEEEECCc
Confidence 3444455555556 33889999988882111111111 0000 357899996 55667799999999999853
No 58
>smart00095 TR_THY Transthyretin.
Probab=58.24 E-value=26 Score=32.76 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=40.6
Q ss_pred eEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceE--e--CCccCCceEEEEEE
Q 007269 300 GTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFY--I--DHIRTGNYSLYAFV 371 (610)
Q Consensus 300 GtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~Ft--I--~nVrpGtY~L~a~~ 371 (610)
-.|+=.|+... .|+||+++.|-|......+.|+ .---.+||.+|+.. + ..+.+|.|+|..-.
T Consensus 4 ~plTtHVLDt~-----~G~PAagv~V~L~~~~~~~~w~-----~la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~t 69 (121)
T smart00095 4 CPLMVKVLDAV-----RGSPAVNVAVKVFKKTEEGTWE-----PFASGKTNESGEIHELTTDEKFVEGLYKVEFDT 69 (121)
T ss_pred CCeEEEEEECC-----CCccCCCCEEEEEEeCCCCceE-----EEEEEecCCCccccCccCcccccceEEEEEEeh
Confidence 34555555444 2899999999995422112343 22236789999874 1 35679999999865
No 59
>PLN03059 beta-galactosidase; Provisional
Probab=58.24 E-value=12 Score=45.29 Aligned_cols=84 Identities=14% Similarity=0.070 Sum_probs=51.5
Q ss_pred eEEEEEEecCCCCcceEEEEEeeeccCCceeEEEEcCCCCCCCCccc--ccccCCCeeeeeeE--------eeeeEEEEE
Q 007269 491 TWQIKFELDNVNESAVYKLRLALASAHVSVLQVRINDPSTEPPLFST--GQIGKENTIARHGI--------YGLYWLFNV 560 (610)
Q Consensus 491 ~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~--~~~~~~~~i~R~~~--------~G~~~~~~~ 560 (610)
=.+-.|++++.. ... +|-....+.=+|.|||..+++ -|.. ..-+=+.|-+|+++ .|.-...-+
T Consensus 622 wYK~~Fd~p~g~--Dpv----~LDm~gmGKG~aWVNG~nIGR-YW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~lY 694 (840)
T PLN03059 622 WYKTTFDAPGGN--DPL----ALDMSSMGKGQIWINGQSIGR-HWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWY 694 (840)
T ss_pred EEEEEEeCCCCC--CCE----EEecccCCCeeEEECCccccc-ccccccccCCCccccccccccchhhhccCCCceeEEE
Confidence 345678775422 112 233334566789999999885 3311 11122446677776 134455667
Q ss_pred EeecCceecCCceEEEEEEecc
Q 007269 561 DVPGALFVKGNNNTIYLTQALS 582 (610)
Q Consensus 561 ~ipa~~L~~G~~NtI~lt~~~g 582 (610)
.||+++|++|. |+|.|==..+
T Consensus 695 HVPr~~Lk~g~-N~lViFEe~g 715 (840)
T PLN03059 695 HVPRSWLKPSG-NLLIVFEEWG 715 (840)
T ss_pred eCcHHHhccCC-ceEEEEEecC
Confidence 89999999999 9987765444
No 60
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=58.15 E-value=20 Score=30.54 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=24.7
Q ss_pred ccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCc
Q 007269 317 YIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHI 360 (610)
Q Consensus 317 ~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nV 360 (610)
+.|+.++.|-|...... .....-=-+.||++|+|+|..-
T Consensus 8 ~~P~~~~~V~L~e~d~~-----~~Ddll~~~~Td~~G~F~l~G~ 46 (80)
T PF01060_consen 8 GKPAKNVKVKLWEDDYF-----DPDDLLDETKTDSDGNFELSGS 46 (80)
T ss_pred CccCCCCEEEEEECCCC-----CCCceeEEEEECCCceEEEEEE
Confidence 47999999999533310 1111212277899999998653
No 61
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=50.72 E-value=36 Score=26.88 Aligned_cols=31 Identities=13% Similarity=0.357 Sum_probs=21.6
Q ss_pred ceeEEEECCccceEe--CCccCCceEEEEEEcc
Q 007269 343 YQFWARANADGYFYI--DHIRTGNYSLYAFVPG 373 (610)
Q Consensus 343 yQywt~td~~G~FtI--~nVrpGtY~L~a~~~G 373 (610)
-.|.+.+|++|.+++ +....|+|++.+.+.-
T Consensus 2 ~~~~~t~~~~G~Ws~t~~~~~dG~y~itv~a~D 34 (54)
T PF13754_consen 2 VTYTTTVDSDGNWSFTVPALADGTYTITVTATD 34 (54)
T ss_pred eEEEEEECCCCcEEEeCCCCCCccEEEEEEEEe
Confidence 356777888898766 4445688888877643
No 62
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=48.52 E-value=56 Score=30.82 Aligned_cols=96 Identities=25% Similarity=0.306 Sum_probs=48.5
Q ss_pred EEEEEecCCCCcceEEEEEeeeccCCceeEEEEcCCCCC--CCCcccccccCCCeeeeeeEeeeeEEEE-EEeecCceec
Q 007269 493 QIKFELDNVNESAVYKLRLALASAHVSVLQVRINDPSTE--PPLFSTGQIGKENTIARHGIYGLYWLFN-VDVPGALFVK 569 (610)
Q Consensus 493 ~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~--~p~~~~~~~~~~~~i~R~~~~G~~~~~~-~~ipa~~L~~ 569 (610)
+|++.++. .....|.+||-.|+.+.+.+.|.+++.... ..+..|.. +... ..++|..|. ++++...--.
T Consensus 41 ~~~v~~~~-~~~~~YrIRiRYAs~~~~~~~i~~~~~~~~~~~~~~~T~~--~~~~-----~~~~y~~F~y~~~~~~~~~~ 112 (143)
T PF03944_consen 41 KIRVTINN-SSSQKYRIRIRYASNSNGTLSISINNSSGNLSFNFPSTMS--NGDN-----LTLNYESFQYVEFPTPFTFS 112 (143)
T ss_dssp EEEEEESS-SSTEEEEEEEEEEESS-EEEEEEETTEEEECEEEE--SSS--TTGG-----CCETGGG-EEEEESSEEEES
T ss_pred EEEEEecC-CCCceEEEEEEEEECCCcEEEEEECCccceeeeecccccc--CCCc-----cccccceeEeeecCceEEec
Confidence 44444332 234679999999998889999999886432 11111111 1111 333333332 2233211112
Q ss_pred CC-ceEEEEEEeccCCCCceEEEEEEEEe
Q 007269 570 GN-NNTIYLTQALSGSPFRGVMYDYIRLE 597 (610)
Q Consensus 570 G~-~NtI~lt~~~g~s~f~gvmyD~IrLe 597 (610)
.. ..+|.|.+...++. ..|.-|=|++.
T Consensus 113 ~~~~~~~~i~i~~~~~~-~~v~IDkIEFI 140 (143)
T PF03944_consen 113 SNQSITITISIQNISSN-GNVYIDKIEFI 140 (143)
T ss_dssp TSEEEEEEEEEESSTTT-S-EEEEEEEEE
T ss_pred CCCceEEEEEEEecCCC-CeEEEEeEEEE
Confidence 22 14577766544331 37999999875
No 63
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=43.43 E-value=34 Score=42.54 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=46.0
Q ss_pred EEEEEEecCCCCcceEEEEEeeeccCCceeEEEEcCCCCCCCCcccccccCCCeeeeeeEeeeeEEEEEEeecCceecCC
Q 007269 492 WQIKFELDNVNESAVYKLRLALASAHVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGN 571 (610)
Q Consensus 492 w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 571 (610)
-+=.|.+++........|++..+ .....|.|||+.++. -.|-+.-++|+|.. .|+.|+
T Consensus 113 Yrr~F~lp~~~~gkrv~L~FeGV---~s~a~VwvNG~~VG~------------------~~g~~~pfefDIT~-~l~~G~ 170 (1021)
T PRK10340 113 YQRTFTLSDGWQGKQTIIKFDGV---ETYFEVYVNGQYVGF------------------SKGSRLTAEFDISA-MVKTGD 170 (1021)
T ss_pred EEEEEEeCcccccCcEEEEECcc---ceEEEEEECCEEecc------------------ccCCCccEEEEcch-hhCCCc
Confidence 34468887654333455555432 567899999986541 01456788999987 678999
Q ss_pred ceEEEEEEec
Q 007269 572 NNTIYLTQAL 581 (610)
Q Consensus 572 ~NtI~lt~~~ 581 (610)
|+|.+.|.+
T Consensus 171 -N~LaV~V~~ 179 (1021)
T PRK10340 171 -NLLCVRVMQ 179 (1021)
T ss_pred -cEEEEEEEe
Confidence 999999954
No 64
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=43.28 E-value=23 Score=34.41 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=31.5
Q ss_pred eEEEEEeeeccCCceeEEEEcCCCCCCCCcccccccCCCeeeeeeE--eeeeEEEEEEeecCceecCCceEEEEEEecc
Q 007269 506 VYKLRLALASAHVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGI--YGLYWLFNVDVPGALFVKGNNNTIYLTQALS 582 (610)
Q Consensus 506 ~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~--~G~~~~~~~~ipa~~L~~G~~NtI~lt~~~g 582 (610)
.++|.|+ +.+..++.|||+.+..- +..+ .+..+ +-+|..| +| +.+|++|+ |+|-+.+..|
T Consensus 5 ~A~l~is----a~g~Y~l~vNG~~V~~~----~l~P-----~~t~y~~~~~Y~ty--DV-t~~L~~G~-N~iav~lg~g 66 (172)
T PF08531_consen 5 SARLYIS----ALGRYELYVNGERVGDG----PLAP-----GWTDYDKRVYYQTY--DV-TPYLRPGE-NVIAVWLGNG 66 (172)
T ss_dssp --EEEEE----EESEEEEEETTEEEEEE-----------------BTTEEEEEEE--E--TTT--TTE-EEEEEEEEE-
T ss_pred EEEEEEE----eCeeEEEEECCEEeeCC----cccc-----ccccCCCceEEEEE--eC-hHHhCCCC-CEEEEEEeCC
Confidence 3455553 56799999999866420 1000 01111 2344444 44 67899999 9999998654
No 65
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=39.54 E-value=53 Score=28.73 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=25.0
Q ss_pred ccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeC
Q 007269 317 YIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYID 358 (610)
Q Consensus 317 ~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~ 358 (610)
..|..+|.|.|.=.+..+ .......+.||++|.|.|.
T Consensus 18 ~~~l~GA~V~v~C~~~~~-----~~~~~~~~~Td~~G~F~i~ 54 (97)
T PF01190_consen 18 AKPLPGAKVSVECKDGNG-----GVVFSAEAKTDENGYFSIE 54 (97)
T ss_pred CccCCCCEEEEECCCCCC-----CcEEEEEEEeCCCCEEEEE
Confidence 467889999995332210 0125556889999999996
No 66
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=38.56 E-value=38 Score=30.77 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=29.8
Q ss_pred CccceEeCCccCCceEEEEEEcceeceeeeeeeEEEeCCceeee
Q 007269 351 ADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDI 394 (610)
Q Consensus 351 ~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l 394 (610)
..|.|..-.|.||.|++.+-.....+.-..+.+|+|.+|++--+
T Consensus 56 ~~g~y~~~~v~pG~h~i~~~~~~~~~~~~~~l~~~~~~G~~yy~ 99 (117)
T PF11008_consen 56 KNGGYFYVEVPPGKHTISAKSEFSSSPGANSLDVTVEAGKTYYV 99 (117)
T ss_pred CCCeEEEEEECCCcEEEEEecCccCCCCccEEEEEEcCCCEEEE
Confidence 56777777899999999995431110011456799999998554
No 67
>PRK10150 beta-D-glucuronidase; Provisional
Probab=36.28 E-value=86 Score=36.42 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=42.9
Q ss_pred EEEEEecCCCCcceEEEEEeeeccCCceeEEEEcCCCCCCCCcccccccCCCeeeeeeEeeeeEEEEEEeecCceecCCc
Q 007269 493 QIKFELDNVNESAVYKLRLALASAHVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGNN 572 (610)
Q Consensus 493 ~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~~ 572 (610)
+=.|+|++........|++.. .....+|.|||+.+.. -.|-+..++|+|.. .|+.|++
T Consensus 70 rr~f~lp~~~~gk~v~L~Feg---v~~~a~V~lNG~~vg~------------------~~~~~~~f~~DIT~-~l~~G~~ 127 (604)
T PRK10150 70 QREVFIPKGWAGQRIVLRFGS---VTHYAKVWVNGQEVME------------------HKGGYTPFEADITP-YVYAGKS 127 (604)
T ss_pred EEEEECCcccCCCEEEEEECc---ccceEEEEECCEEeee------------------EcCCccceEEeCch-hccCCCc
Confidence 345888654433345555543 3456689999985531 12556778999975 6788873
Q ss_pred eEEEEEEe
Q 007269 573 NTIYLTQA 580 (610)
Q Consensus 573 NtI~lt~~ 580 (610)
|+|.+.+.
T Consensus 128 n~L~V~v~ 135 (604)
T PRK10150 128 VRITVCVN 135 (604)
T ss_pred eEEEEEEe
Confidence 69999984
No 68
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=32.49 E-value=97 Score=28.22 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.3
Q ss_pred CccceEeCCccCCceEEEEEEc
Q 007269 351 ADGYFYIDHIRTGNYSLYAFVP 372 (610)
Q Consensus 351 ~~G~FtI~nVrpGtY~L~a~~~ 372 (610)
.+-.++|++++||+|.+.++.+
T Consensus 41 ~~~~~~f~~lp~G~YAi~v~hD 62 (112)
T PF09912_consen 41 GTVTITFEDLPPGTYAIAVFHD 62 (112)
T ss_pred CcEEEEECCCCCccEEEEEEEe
Confidence 3458999999999999999976
No 69
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=31.28 E-value=54 Score=30.90 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=21.2
Q ss_pred CccCCceEEEEEEcceeceeeeeeeEEEeC
Q 007269 359 HIRTGNYSLYAFVPGFIGDYKYDFNITIIE 388 (610)
Q Consensus 359 nVrpGtY~L~a~~~G~~G~~~~~~~VtV~a 388 (610)
.++||+|+|.+-+..-.+....+.+++|++
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F~It~ 131 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDFTITA 131 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEEEECH
Confidence 699999999987755333444556677764
No 70
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=29.24 E-value=1.4e+02 Score=37.34 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=44.8
Q ss_pred EEEEEEecCCCCcc-eEEEEEeeeccCCceeEEEEcCCCCCCCCcccccccCCCeeeeeeEeeeeEEEEEEeecCceecC
Q 007269 492 WQIKFELDNVNESA-VYKLRLALASAHVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKG 570 (610)
Q Consensus 492 w~I~F~L~~~~~~~-~~tLriala~a~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G 570 (610)
.+=.|++++..... ...|++. +......|.|||+.++ --.|-+.-++|+|. ..|+.|
T Consensus 124 Yrr~F~vp~~w~~~~rv~L~Fe---GV~~~a~VwvNG~~VG------------------~~~g~~~pfefDIT-~~l~~G 181 (1027)
T PRK09525 124 YSLTFTVDESWLQSGQTRIIFD---GVNSAFHLWCNGRWVG------------------YSQDSRLPAEFDLS-PFLRAG 181 (1027)
T ss_pred EEEEEEeChhhcCCCeEEEEEC---eeccEEEEEECCEEEE------------------eecCCCceEEEECh-hhhcCC
Confidence 34458887643222 3445544 2467889999998543 11255677899996 677899
Q ss_pred CceEEEEEEec
Q 007269 571 NNNTIYLTQAL 581 (610)
Q Consensus 571 ~~NtI~lt~~~ 581 (610)
+ |+|.+.|.+
T Consensus 182 ~-N~L~V~V~~ 191 (1027)
T PRK09525 182 E-NRLAVMVLR 191 (1027)
T ss_pred c-cEEEEEEEe
Confidence 9 999999954
No 71
>PF07550 DUF1533: Protein of unknown function (DUF1533); InterPro: IPR011432 This domain is found duplicated in proteins of unknown function. The proteins typically also contain leucine-rich repeats.
Probab=28.59 E-value=52 Score=26.99 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=16.8
Q ss_pred EEeecCce-ecCCceEEEEEE
Q 007269 560 VDVPGALF-VKGNNNTIYLTQ 579 (610)
Q Consensus 560 ~~ipa~~L-~~G~~NtI~lt~ 579 (610)
+.|.+++| ++|+ |+|+|.-
T Consensus 36 l~i~~~~f~~~G~-~~I~I~A 55 (65)
T PF07550_consen 36 LKIKASAFNKDGE-NTIVIKA 55 (65)
T ss_pred EEEcHHHcCcCCc-eEEEEEe
Confidence 78889999 7889 9999984
No 72
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=28.01 E-value=2.4e+02 Score=28.92 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=45.3
Q ss_pred CeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeCCccCCceEEEE-EEcc-eec
Q 007269 299 RGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYA-FVPG-FIG 376 (610)
Q Consensus 299 RGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~nVrpGtY~L~a-~~~G-~~G 376 (610)
-++++|+|....--.+ =+....++-+-|.+.+ |... +-|.+ ....+|.|.-..+=+|+|.|.. --++ ..
T Consensus 21 ~s~l~G~iiD~~tgE~-i~~~~~gv~i~l~e~g----y~~~--~~~~~-~v~qDGtf~n~~lF~G~Yki~~~~G~fp~~- 91 (222)
T PF12866_consen 21 DSTLTGRIIDVYTGEP-IQTDIGGVRIQLYELG----YGDN--TPQDV-YVKQDGTFRNTKLFDGDYKIVPKNGNFPWV- 91 (222)
T ss_dssp -EEEEEEEEECCTTEE-----STSSEEEEECS-----CCG----SEEE-EB-TTSEEEEEEE-SEEEEEEE-CTSCSBS-
T ss_pred CceEEEEEEEeecCCe-eeecCCceEEEEEecc----cccC--CCcce-EEccCCceeeeeEeccceEEEEcCCCCccc-
Confidence 5899999854220000 0112246777776555 4322 33333 3678999988889999999998 2232 00
Q ss_pred eeeeeeeEEEeCCceeeecceEEe
Q 007269 377 DYKYDFNITIIEGSYIDIGDLVYK 400 (610)
Q Consensus 377 ~~~~~~~VtV~aG~t~~lg~l~~~ 400 (610)
.-..+..|+|+ |.+ ++ ++..+
T Consensus 92 ~~~dti~v~i~-G~t-~~-d~eVt 112 (222)
T PF12866_consen 92 VPVDTIEVDIK-GNT-TQ-DFEVT 112 (222)
T ss_dssp CCE--EEEEES-SCE-EE-EEEE-
T ss_pred CCCccEEEEec-Cce-EE-eEEee
Confidence 11233446666 554 33 45443
No 73
>PF13954 PapC_N: PapC N-terminal domain; PDB: 2VQI_B 3FIP_A 3RFZ_E 3OHN_A 1ZDV_A 1ZE3_D 3BWU_D 1ZDX_A.
Probab=24.27 E-value=1e+02 Score=29.06 Aligned_cols=26 Identities=31% Similarity=0.623 Sum_probs=18.4
Q ss_pred CccCCceEEEEEEcceeceeeeeeeEEEe
Q 007269 359 HIRTGNYSLYAFVPGFIGDYKYDFNITII 387 (610)
Q Consensus 359 nVrpGtY~L~a~~~G~~G~~~~~~~VtV~ 387 (610)
.+.||+|.+-+|++| .+.....|++.
T Consensus 26 ~~~pG~Y~vdv~vN~---~~~~~~~i~f~ 51 (146)
T PF13954_consen 26 AIPPGEYSVDVYVNG---KFIGRYDIEFI 51 (146)
T ss_dssp SS-SEEEEEEEEETT---EEEEEEEEEEE
T ss_pred CCCCeEEEEEEEECC---eeeeeEEEEEE
Confidence 699999999999995 33444445555
No 74
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=23.89 E-value=3.4e+02 Score=31.21 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=39.6
Q ss_pred CCCCCCCCCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeC--CccCCceEEE
Q 007269 291 KDFPQSDQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYID--HIRTGNYSLY 368 (610)
Q Consensus 291 ~~y~~~~qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~--nVrpGtY~L~ 368 (610)
++|.-..+..+|.=+|.... ...+.+-|-.... +.++++=-+..|..-.|+|. ++.+|.|+|.
T Consensus 320 ~eY~I~dG~~~i~ftv~a~g---------~~~vta~V~d~~g------~~~~~~~~~v~d~s~~vtL~Ls~~~AG~y~Lv 384 (478)
T PRK13211 320 KEYKIGDGAATLDFTVTATG---------DMNVEATVYNHDG------EALGSKSQTVNDGSQSVSLDLSKLKAGHHMLV 384 (478)
T ss_pred ceeEEcCCcEEEEEEEEecc---------ceEEEEEEEcCCC------CeeeeeeEEecCCceeEEEecccCCCceEEEE
Confidence 67777666666666555433 3355555532221 23344333444555567765 8999999999
Q ss_pred EEEc
Q 007269 369 AFVP 372 (610)
Q Consensus 369 a~~~ 372 (610)
+.+.
T Consensus 385 v~~t 388 (478)
T PRK13211 385 VKAK 388 (478)
T ss_pred EEEE
Confidence 8753
No 75
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=23.25 E-value=3.9e+02 Score=22.94 Aligned_cols=65 Identities=17% Similarity=0.117 Sum_probs=38.6
Q ss_pred eEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccce--EeCCccCCceEEEEEEccee
Q 007269 300 GTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYF--YIDHIRTGNYSLYAFVPGFI 375 (610)
Q Consensus 300 GtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~F--tI~nVrpGtY~L~a~~~G~~ 375 (610)
..|+-+|...+ |.|..+..|-+.-.+.. .....+ . ...+|++|.. .+..-.+|++++++...|..
T Consensus 20 ~~i~v~v~D~~------Gnpv~~~~V~f~~~~~~-~~~~~~--~--~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~~ 86 (92)
T smart00634 20 ITLTATVTDAN------GNPVAGQEVTFTTPSGG-ALTLSK--G--TATTDANGIATVTLTSTTAGVYTVTASLENGS 86 (92)
T ss_pred EEEEEEEECCC------CCCcCCCEEEEEECCCc-eeeccC--C--eeeeCCCCEEEEEEECCCCcEEEEEEEECCCc
Confidence 45555554433 78888887777644321 111111 1 2368888864 45566789999999887643
No 76
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=21.91 E-value=2.3e+02 Score=24.40 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=19.7
Q ss_pred ceEEEEEeeeccCCceeEEEEcCCCC
Q 007269 505 AVYKLRLALASAHVSVLQVRINDPST 530 (610)
Q Consensus 505 ~~~tLriala~a~~~~~~V~vNg~~~ 530 (610)
..|+|++.+.+.....+.|.+.|..+
T Consensus 11 ~~~~v~~~lPG~~kedi~v~~~~~~L 36 (90)
T cd06470 11 NNYRITLAVAGFSEDDLEIEVENNQL 36 (90)
T ss_pred CeEEEEEECCCCCHHHeEEEEECCEE
Confidence 47888888888777778888777543
No 77
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=21.55 E-value=1.2e+02 Score=26.40 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=24.7
Q ss_pred ccCccEEEecCCCCCCCcccccccceeEEEEC-CccceEeCCccCC
Q 007269 319 AANGAYVGLAPPGNAGSWQRECKGYQFWARAN-ADGYFYIDHIRTG 363 (610)
Q Consensus 319 pA~~a~V~La~~~~~gswq~~~kgyQywt~td-~~G~FtI~nVrpG 363 (610)
.+.++.|.+. .......|.|.... .+|.|.|.++..|
T Consensus 35 ~~~g~~v~~~--------~~~~~~~Q~W~i~~~~~g~y~I~n~~s~ 72 (105)
T PF14200_consen 35 TANGTNVQQW--------TCNGNDNQQWKIEPVGDGYYRIRNKNSG 72 (105)
T ss_dssp CSTTEBEEEE--------ESSSSGGGEEEEEESTTSEEEEEETSTT
T ss_pred cCCCcEEEEe--------cCCCCcCcEEEEEEecCCeEEEEECCCC
Confidence 4566777774 32335688886554 6788999888665
No 78
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=21.17 E-value=2.4e+02 Score=26.62 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=36.8
Q ss_pred ccccccCccEEEecC-CCCCCCcccccccc-eeEEEECCccceEeCCccCCceEEEEEEc
Q 007269 315 MDYIAANGAYVGLAP-PGNAGSWQRECKGY-QFWARANADGYFYIDHIRTGNYSLYAFVP 372 (610)
Q Consensus 315 ~~~~pA~~a~V~La~-~~~~gswq~~~kgy-Qywt~td~~G~FtI~nVrpGtY~L~a~~~ 372 (610)
.++.|+....|.|-- +.. +-| .++.- .-=.+||.+|.+.=+++|-|+|.+.+-..
T Consensus 51 ~e~~pi~~~ev~lmKa~ds--~~q-Ps~eig~~IGKTD~~Gki~Wk~~~kG~Y~v~l~n~ 107 (131)
T PF10794_consen 51 AEGQPIKDFEVTLMKAADS--DPQ-PSKEIGISIGKTDEEGKIIWKNGRKGKYIVFLPNG 107 (131)
T ss_pred CCCCcccceEEEEEecccc--CCC-CchhhceeecccCCCCcEEEecCCcceEEEEEcCC
Confidence 558999998887742 111 111 11111 11246999999999999999999887654
No 79
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=20.02 E-value=1.1e+02 Score=28.23 Aligned_cols=38 Identities=11% Similarity=0.392 Sum_probs=27.9
Q ss_pred CCCCcCCCceEEEEEEecCCCCcceEEEEEeeeccCCceeEEEEcCCCCC
Q 007269 482 KDNQTYEGTTWQIKFELDNVNESAVYKLRLALASAHVSVLQVRINDPSTE 531 (610)
Q Consensus 482 ~~~~~~~~~~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~ 531 (610)
.+||++.-++|.++|-= | .+.......++|.|||..+.
T Consensus 35 q~DGs~~sSPFhVRFGk----------~--~vl~~~ek~V~I~VNG~~~~ 72 (110)
T PF04571_consen 35 QPDGSLKSSPFHVRFGK----------L--GVLRPREKVVDIEVNGKPVD 72 (110)
T ss_pred cCCCCEecCccEEEEcc----------e--eeecccCcEEEEEECCEEcc
Confidence 47888999999999971 1 33344556789999998654
Done!