BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007270
(610 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q49AM1|MTER3_HUMAN mTERF domain-containing protein 3, mitochondrial OS=Homo sapiens
GN=MTERFD3 PE=1 SV=2
Length = 385
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 115/245 (46%), Gaps = 11/245 (4%)
Query: 279 LLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDND 338
+LL E++V+ + + L+ +G + + ++L P I + A+ T+ ++ + + +
Sbjct: 69 VLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEE 128
Query: 339 VGKMLLKYPW-ILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLML 397
+ K++ ++P + QEN + + F E + + + R + + P++ K K M+
Sbjct: 129 LIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMV 188
Query: 398 DQLGELGVE------NKK--LGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRIL 449
L E ++ N K L ++++++P +LL P ++ + FL++ GF + ++L
Sbjct: 189 RILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFTSFEILQLL 248
Query: 450 GRCPELFASNIERTLMKKIDFLIGIGISKDH-LPRTIKKYPELLVSDVDRTLLPRIKYLM 508
+ R++ I F DH L + + K P LL V L R++ L+
Sbjct: 249 SKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVP-VLEERMQGLL 307
Query: 509 EMGLS 513
G+S
Sbjct: 308 REGIS 312
>sp|Q5R6G1|MTER3_PONAB mTERF domain-containing protein 3, mitochondrial OS=Pongo abelii
GN=MTERFD3 PE=2 SV=1
Length = 385
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 113/245 (46%), Gaps = 11/245 (4%)
Query: 279 LLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDND 338
+LL E++V+ + + L+ +G + + N+L P I A+ T+ ++ + + +
Sbjct: 69 VLLEDETYVEEIANILQELGADETAVANILERCPEAIVCRPTAVNTQRKLWQLVCKNEEE 128
Query: 339 VGKMLLKYPW-ILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLML 397
+ K++ ++P + QEN + + F E + + + R + + ++ K K M+
Sbjct: 129 LIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAASNVFHNPVEKNKQMV 188
Query: 398 DQLGE--LGV----ENKK--LGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRIL 449
L E L V N K L ++++++P +LL P ++ + FL++ GF + ++L
Sbjct: 189 RILQESYLNVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFTSFEILQLL 248
Query: 450 GRCPELFASNIERTLMKKIDFLIGIGISKDH-LPRTIKKYPELLVSDVDRTLLPRIKYLM 508
+ R++ I F DH L + + K P LL V L R++ L+
Sbjct: 249 SKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVP-VLEERMQGLL 307
Query: 509 EMGLS 513
G+S
Sbjct: 308 REGIS 312
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 99/204 (48%), Gaps = 15/204 (7%)
Query: 278 LLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDN 337
LL L E + ++ FL+ VG+ + +G L P ++ ++A+ T+ + +
Sbjct: 167 LLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGEELEALETRVAYLKSKKFGNA 226
Query: 338 DVGKMLLKYPWILSTSIQENYEEILSVFNEE--KVPKLSVDRAIRSWPHLLGCSTSKLKL 395
++ +M+ + P++L S+ E + L F E K + D IR +P LL T KL+
Sbjct: 227 EITQMVSRAPYLLLFSV-ERLDNRLGFFKNELGLSVKKTKDLVIR-FPRLL---TGKLEP 281
Query: 396 MLDQLG----ELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGR 451
+ + L E G E ++ Q+ K+P++L + RQ +L ++ N +L R
Sbjct: 282 VKENLQVCQVEFGFERNEVQQIAFKTPKILTASKKRLRQTFDYLHNIMGIPHN---MLTR 338
Query: 452 CPELFASNIERTLMKKIDFLIGIG 475
P++F S + R + + FLI +G
Sbjct: 339 FPQVFNSKLLRIKERHM-FLIFLG 361
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 94/211 (44%), Gaps = 13/211 (6%)
Query: 400 LGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASN 459
L ++G+E+ +LG + K+P +L + + V++L+ F + +++ R P L +
Sbjct: 183 LKDVGIEDNQLGPFLTKNPYILGEELEALETRVAYLKSKKFGNAEITQMVSRAPYLLLFS 242
Query: 460 IERTLMKKIDFLIG-IGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIA 518
+ER L ++ F +G+S + ++P LL ++ +E G + ++
Sbjct: 243 VER-LDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKLEPVKENLQVCQVEFGFERNEVQ 301
Query: 519 FMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPR--FWVL 576
+ + +L S + R +L N M + +P+ F+ L +IK R F +
Sbjct: 302 QIAFKTPKILTAS-KKRLRQTFDYLHNIMGIPHNMLTRFPQVFNSKL-LRIKERHMFLIF 359
Query: 577 KGRN-------IECSLEEMLGKNDDEFATEF 600
GR SL++++ D+ F TE
Sbjct: 360 LGRAQYDPTKPSYISLDQLVSLPDEVFCTEI 390
Score = 37.4 bits (85), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 6/149 (4%)
Query: 422 LRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHL 481
LR + + ++ L +G D V + L + E+ + K + FL +GI + L
Sbjct: 134 LRDYVDHSETLTKLVHLGVDLSQVEKRQKAGQLLLTLDFEKDITKILLFLKDVGIEDNQL 193
Query: 482 PRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLA 541
+ K P +L +++ L R+ YL +I MV R LL +S+ E +L
Sbjct: 194 GPFLTKNPYILGEELE-ALETRVAYLKSKKFGNAEITQMVSRAPYLLLFSV-ERLDNRLG 251
Query: 542 FLLN----TMEKSLQDVVAYPRYFSYSLE 566
F N +++K+ V+ +PR + LE
Sbjct: 252 FFKNELGLSVKKTKDLVIRFPRLLTGKLE 280
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 10/192 (5%)
Query: 393 LKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRC 452
+K ML L ++G+E+ +LG + K+ + + + V++L F + +V +++ +
Sbjct: 188 IKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKA 247
Query: 453 PELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGL 512
P L ++ER + F + +S + + P LL ++ Y +E+G
Sbjct: 248 PFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGF 307
Query: 513 SKRDIAFMVRRFSPLLGYS---IDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKI 569
+I M+ R +L + + E F F+ N M +V +P+ F+ L K+
Sbjct: 308 KHNEIQHMITRIPKMLTANKMKLTETF----DFVHNVMSIPHHIIVKFPQVFNTRL-FKV 362
Query: 570 KPR--FWVLKGR 579
K R F GR
Sbjct: 363 KERHLFLTYLGR 374
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 18/164 (10%)
Query: 397 LDQLGELGVENKKLGQVIAKSPQ---LLLRK--PQEFRQVVSFLEDVGFDRENVGRILGR 451
L +L LGV+ K I K P+ LLLR ++ +Q++ FL+DVG + +G L +
Sbjct: 156 LQKLVLLGVDLSK----IEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTK 211
Query: 452 CPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLM-EM 510
+F+ ++E L ++ +L SK + + ++K P LL V+R L R+ + E+
Sbjct: 212 NHAIFSEDLE-NLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKEL 269
Query: 511 GLSKRDIAFMVRRFSPLLGYSID------EVFRPKLAFLLNTME 548
LS + +V R LL S++ +V+R +L F N ++
Sbjct: 270 ELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQ 313
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 7/165 (4%)
Query: 278 LLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDN 337
LL L E +K ++ FL+ VG+ + +G L + +++ ++T+
Sbjct: 179 LLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKA 238
Query: 338 DVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRA---IRSWPHLLGCSTSKLK 394
DV +M+ K P++L+ S+ E + L F +E +LSV + + P LL S +K
Sbjct: 239 DVAQMVRKAPFLLNFSV-ERLDNRLGFFQKEL--ELSVKKTRDLVVRLPRLLTGSLEPVK 295
Query: 395 LMLDQLG-ELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDV 438
+ ELG ++ ++ +I + P++L + + F+ +V
Sbjct: 296 ENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNV 340
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 92/188 (48%), Gaps = 12/188 (6%)
Query: 278 LLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDN 337
LL L E H+K ++ FL+ +G+ + +G L + +++ ++T+ +
Sbjct: 174 LLRLDFEKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLENLKTRVAYLQSKNFSKT 233
Query: 338 DVGKMLLKYPWILSTSIQENYEEILSVFNEE---KVPKLSVDRAIRSWPHLLGCSTSKLK 394
D+ +M+ P++LS S+ E + L F +E V K + D +R P LL S +K
Sbjct: 234 DIARMVKNAPFLLSFSV-ERLDNRLGFFQKELELNVKK-TRDLVVR-LPRLLTGSLEPVK 290
Query: 395 LMLDQLG-ELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENV-GRILGRC 452
+ ELG ++ ++ ++ K P++L ++ ++ ++ +V N+ I+ +
Sbjct: 291 ENMKVYHLELGFKHNEIQHMVIKIPKMLTANKRKLTEIFDYVHNVM----NIPHHIIVKF 346
Query: 453 PELFASNI 460
P+LF + +
Sbjct: 347 PQLFNTRV 354
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 91/197 (46%), Gaps = 20/197 (10%)
Query: 393 LKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRC 452
+K +L L +LG+E+ +LG + K+ + + + V++L+ F + ++ R++
Sbjct: 183 IKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLENLKTRVAYLQSKNFSKTDIARMVKNA 242
Query: 453 PELFASNIERTLMKKIDFL-----IGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYL 507
P L + ++ER L ++ F + + ++D + + P LL ++ Y
Sbjct: 243 PFLLSFSVER-LDNRLGFFQKELELNVKKTRD----LVVRLPRLLTGSLEPVKENMKVYH 297
Query: 508 MEMGLSKRDIAFMVRRFSPLLGYS---IDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYS 564
+E+G +I MV + +L + + E+F ++ N M +V +P+ F+
Sbjct: 298 LELGFKHNEIQHMVIKIPKMLTANKRKLTEIF----DYVHNVMNIPHHIIVKFPQLFNTR 353
Query: 565 LEKKIKPR--FWVLKGR 579
+ KIK R F GR
Sbjct: 354 VF-KIKERHLFLAYLGR 369
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 12/145 (8%)
Query: 397 LDQLGELGVENKKLGQVIAKSP---QLLLRKPQE--FRQVVSFLEDVGFDRENVGRILGR 451
L +L +LGV+ K I K P LLLR E +Q++ FL+D+G + +G L +
Sbjct: 151 LQKLVQLGVDLSK----IEKHPDAANLLLRLDFEKHIKQILLFLKDLGLEDNQLGPFLTK 206
Query: 452 CPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLM-EM 510
+F+ ++E L ++ +L SK + R +K P LL V+R L R+ + E+
Sbjct: 207 NYAIFSEDLE-NLKTRVAYLQSKNFSKTDIARMVKNAPFLLSFSVER-LDNRLGFFQKEL 264
Query: 511 GLSKRDIAFMVRRFSPLLGYSIDEV 535
L+ + +V R LL S++ V
Sbjct: 265 ELNVKKTRDLVVRLPRLLTGSLEPV 289
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 18/164 (10%)
Query: 397 LDQLGELGVENKKLGQVIAKSP---QLLLRK--PQEFRQVVSFLEDVGFDRENVGRILGR 451
L +L +LGV+ K I K P LLLR ++ +Q++ FL+D+G + +G L +
Sbjct: 148 LQKLVQLGVDLSK----IEKHPDVANLLLRLNFEKDIKQILLFLKDLGLEDNQLGPFLTK 203
Query: 452 CPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLM-EM 510
+F+ ++E L ++ +L SK + +K P LL V+R L R+ + E+
Sbjct: 204 NYAIFSEDLE-NLKTRVAYLQSKNFSKTDIACMVKNAPFLLSFSVER-LDNRLGFFQKEL 261
Query: 511 GLSKRDIAFMVRRFSPLLGYSID------EVFRPKLAFLLNTME 548
LS + +V R LL S++ +V+R +L F N ++
Sbjct: 262 ELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQ 305
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 83/187 (44%), Gaps = 8/187 (4%)
Query: 393 LKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRC 452
+K +L L +LG+E+ +LG + K+ + + + V++L+ F + ++ ++
Sbjct: 180 IKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLENLKTRVAYLQSKNFSKTDIACMVKNA 239
Query: 453 PELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGL 512
P L + ++ER + F + +S + + P LL ++ Y +E+G
Sbjct: 240 PFLLSFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGF 299
Query: 513 SKRDIAFMVRRFSPLLGYS---IDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKI 569
+I MV + +L + + E F ++ N M +V +P+ F+ + KI
Sbjct: 300 KHNEIQHMVTKIPKMLTANKRKLTETFD----YVHNVMNIPHHIIVKFPQVFNTRVF-KI 354
Query: 570 KPRFWVL 576
K R L
Sbjct: 355 KERHLFL 361
>sp|Q5XIE2|MTER3_RAT mTERF domain-containing protein 3, mitochondrial OS=Rattus
norvegicus GN=Mterfd3 PE=2 SV=1
Length = 385
Score = 40.0 bits (92), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 114/260 (43%), Gaps = 16/260 (6%)
Query: 279 LLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDND 338
+LL E++ + + + L+ +G + + ++L P I + A+ TK ++ + +
Sbjct: 69 VLLEEETYAEEIANILKELGANQTVIASILERCPEAIVCSPAAVNTKRKLWQMVCKTKTE 128
Query: 339 VGKMLLKYPW-ILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLML 397
+ +++ ++P + QEN + + F E + + + R + + + K M+
Sbjct: 129 LIQLIEQFPESFFAVKDQENQKLNVQFFQELGLKNVVITRFLTTASSIFHNPVENNKQMI 188
Query: 398 DQLGE----LG--VENKK--LGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRIL 449
L E LG N K L ++++++P ++L P +V+ FL+ GF V ++L
Sbjct: 189 GVLLESYLNLGGSEANAKVWLLKLLSQNPFIVLSSPTAVGEVLKFLQGQGFTDSEVLQLL 248
Query: 450 GRCPELFASNIERTLMKKIDFLIGIGISKDH-LPRTIKKYPELLVSDVDRTLLPRIKYLM 508
+ ++ I F DH L + + K P LL L RI+ L+
Sbjct: 249 SKLKGFLFQLQPGSIQNSISFTKTTFECTDHDLRQLVVKCPALLYYPAP-VLEERIQALL 307
Query: 509 EMGLSKRDIAFMVRRFSPLL 528
+ G+S I R SP++
Sbjct: 308 KEGISVAQI-----RASPMV 322
>sp|Q4G078|MTER2_RAT mTERF domain-containing protein 2 OS=Rattus norvegicus GN=Mterfd2
PE=2 SV=1
Length = 347
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 396 MLDQLGEL---GVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRC 452
+LD + EL G+ + + + K+PQLL + ++ S+L +G + R+L C
Sbjct: 124 LLDIISELLLLGLNPEPVFMALKKNPQLLKLSATQMKRRSSYLRKLGLGEGKLKRVLSVC 183
Query: 453 PELFA------SNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKY 506
P++F NI + L +K F + H+ + + P +L D L + +Y
Sbjct: 184 PKVFTMRQQDIDNIVKVLKEKCLFTV------QHITDILHRCPAVLQEDPSE-LEYKFQY 236
Query: 507 -LMEMGLSKRDIAFMVRRFSPLLGYSIDEV 535
MGL+ DI VR + L YSI +V
Sbjct: 237 AYFRMGLTHLDI---VR--TDFLQYSIAKV 261
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 378 AIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFL-E 436
A++ P LL S +++K L +LG+ KL +V++ P++ + Q+ +V L E
Sbjct: 144 ALKKNPQLLKLSATQMKRRSSYLRKLGLGEGKLKRVLSVCPKVFTMRQQDIDNIVKVLKE 203
Query: 437 DVGFDRENVGRILGRCPELFASN 459
F +++ IL RCP + +
Sbjct: 204 KCLFTVQHITDILHRCPAVLQED 226
>sp|Q7Z6M4|MTER2_HUMAN mTERF domain-containing protein 2 OS=Homo sapiens GN=MTERFD2 PE=1
SV=3
Length = 381
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 22/155 (14%)
Query: 391 SKLKLMLDQLGE---LGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGR 447
+ L+ +LD + E LG+ + + V+ KSPQLL + R+ S+L+ +G + R
Sbjct: 119 ASLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKR 178
Query: 448 ILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVS--DVDRTLLPRIK 505
+L CPE+F M++ D + + K+ T+++ ++L S V R L +++
Sbjct: 179 VLYCCPEIFT-------MRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLE 231
Query: 506 YLME-----MGLSKRDIAFMVRRFSPLLGYSIDEV 535
Y + MG+ DI S L YS+ ++
Sbjct: 232 YKFQYAYFRMGIKHPDIV-----KSEYLQYSLTKI 261
>sp|Q9EPI8|MTERF_RAT Transcription termination factor, mitochondrial OS=Rattus
norvegicus GN=Mterf PE=1 SV=1
Length = 374
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 2/142 (1%)
Query: 373 LSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVV 432
+ VD A R P + + + + + L G +K +G +I++ P+ + R P+ +
Sbjct: 61 VDVDMARRRQPGVFNKAVTNEQELKMFLLSKGASDKVIGSIISRYPRAITRTPESLSKRW 120
Query: 433 SFLEDVGFDRENVGRILGRCPE-LFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPEL 491
++ + IL R PE F SN L I FL +G++ L R + P
Sbjct: 121 DLWREIMASDLEIVNILERSPESFFRSNNNLNLENNIKFLCSVGLTHKCLCRLLTSAPRT 180
Query: 492 LVSDVDRTLLPRIKYLMEMGLS 513
+ ++ +++L E G+S
Sbjct: 181 FSNSLNLN-KQMVEFLQETGIS 201
>sp|Q8BVN4|MTER2_MOUSE mTERF domain-containing protein 2 OS=Mus musculus GN=Mterfd2 PE=1
SV=1
Length = 346
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 396 MLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPEL 455
++ +L LG+ + + + K+PQLL + ++ S+L +G + R+L CPE+
Sbjct: 127 IVSELLLLGLNPEPVFNALKKNPQLLKLSSMQMKRRSSYLRKLGLGEGKLKRVLSVCPEV 186
Query: 456 FASNIERTLMKKIDFLIGIGISK-----DHLPRTIKKYPELLVSDVDRTLLPRIKY-LME 509
F + + ID ++ + K H+ + + P +L D + L + +Y
Sbjct: 187 FTMH-----QRDIDRVVKVLREKCLFTAQHITDVLHRCPTVLQEDPNE-LEYKFQYAYFR 240
Query: 510 MGLSKRDIAFMVRRFSPLLGYSIDEV 535
MGL+ DI VR + L YSI ++
Sbjct: 241 MGLTHLDI---VR--TNFLQYSITKI 261
Score = 36.2 bits (82), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 378 AIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFL-E 436
A++ P LL S+ ++K L +LG+ KL +V++ P++ ++ +VV L E
Sbjct: 144 ALKKNPQLLKLSSMQMKRRSSYLRKLGLGEGKLKRVLSVCPEVFTMHQRDIDRVVKVLRE 203
Query: 437 DVGFDRENVGRILGRCPELFASN 459
F +++ +L RCP + +
Sbjct: 204 KCLFTAQHITDVLHRCPTVLQED 226
>sp|O69853|Y6023_STRCO Exopolysaccharide phosphotransferase SCO6023 OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145)
GN=SCO6023 PE=3 SV=1
Length = 586
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 17/90 (18%)
Query: 377 RAIRSWPHL---------LGCSTSKLKLMLDQLGELGVENKKLGQVI-----AKSPQLLL 422
RA R WPHL L ++ L+ + LG+ L V+ A +
Sbjct: 60 RARRRWPHLFREGERLAALAGHGDRIALVRPTVSPLGLREANLELVVTALEEAGVDYFAV 119
Query: 423 RKPQEFRQVVSFLEDVGFDRENVGRILGRC 452
R +FR V++ E DRE VGR L RC
Sbjct: 120 RGTSDFRSVLAVAES---DREQVGRALERC 146
>sp|P91079|SPTC1_CAEEL Serine palmitoyltransferase 1 OS=Caenorhabditis elegans GN=sptl-1
PE=2 SV=1
Length = 458
Score = 36.6 bits (83), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 197 PLPPLIH-KVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARR 255
PLP +I K ++ +F S + +GK GR + +H ++P+ EDV +A E A
Sbjct: 244 PLPKIIEFKWRFKVRVFIDESWSFGVIGKTGRGVTEHFNVPM-EDVDMVMASLENALAST 302
Query: 256 GGL 258
GG
Sbjct: 303 GGF 305
>sp|O35704|SPTC1_MOUSE Serine palmitoyltransferase 1 OS=Mus musculus GN=Sptlc1 PE=2 SV=2
Length = 473
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 197 PLPPLIH-KVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARR 255
PLP L+ K KY IF S + LG++GR + +H I ID D+ A E A
Sbjct: 256 PLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGISID-DIDLISANMENALASV 314
Query: 256 GGL 258
GG
Sbjct: 315 GGF 317
>sp|O54695|SPTC1_CRIGR Serine palmitoyltransferase 1 OS=Cricetulus griseus GN=SPTLC1 PE=1
SV=1
Length = 473
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 197 PLPPLIH-KVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARR 255
PLP L+ K KY IF S + LG++GR + +H I ID D+ A E A
Sbjct: 256 PLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGISID-DIDLISANMENALASV 314
Query: 256 GGL 258
GG
Sbjct: 315 GGF 317
>sp|Q06698|YL419_YEAST Putative ATP-dependent RNA helicase YLR419W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YLR419W PE=1
SV=1
Length = 1435
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 32/263 (12%)
Query: 57 PLLCSSSTNSSNNAP--SDQSQSQSQSHSLTLTQQAIY-DYLSELGISQEDCAFISSNSP 113
PL+ S + + N S+ +S + S S T+ I D LS L +E I S+
Sbjct: 537 PLIPDSDSKGAINKRNISNGKRSINNSSSRKFTKTTISEDTLSVL--REEYTKRIKSSEY 594
Query: 114 KYAQMLNDSVQDLEEWKSWSSS-SVSNKNDV-----GNGDGEESVLIGFKEKVVRMAKEK 167
K Q++ + L WK + NKN+V G G+ + ++ F ++ KEK
Sbjct: 595 KSMQLVR---EQLPAWKKQKVIIDIINKNEVVLITGETGSGKSTQVVQFILDFLQ--KEK 649
Query: 168 GDNGKVAFLESL-----GLSLSSAISIARSLS-GEPLPPLI---HKVKYMKEIFFSGSNT 218
GD GK + + + L+ +S R ++ GE + +I +K K I F +
Sbjct: 650 GDFGKTKIVCTQPRRISAIGLAERVSDERCVTCGEEVGYVIRGVNKTKASTRIKFMTTGV 709
Query: 219 ERTLGKNGRRMMKHLSIPIDE------DVQQTLAFFEKIEAR-RGGLDMLGSSDASFRYL 271
L +N R M+++ + IDE D + + + R RG +L S+ +
Sbjct: 710 LVRLLQNARTMLENTIVVIDEVHERSIDTDLIVTLMKNLLHRVRGMKIVLMSATVNVDLF 769
Query: 272 VESFPRLLLLSAESHVKPVVDFL 294
+ FP L E P+ D+
Sbjct: 770 KKFFPGLATCHIEGRTFPITDYF 792
>sp|Q3MHG1|SPTC1_BOVIN Serine palmitoyltransferase 1 OS=Bos taurus GN=SPTLC1 PE=2 SV=1
Length = 473
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 197 PLPPLIH-KVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARR 255
PLP L+ K KY IF S + LG++GR + +H I ID D+ A E A
Sbjct: 256 PLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHFGISID-DIDLISANMENSLASI 314
Query: 256 GGL 258
GG
Sbjct: 315 GGF 317
>sp|A9KTE7|ADDB_CLOPH ATP-dependent helicase/deoxyribonuclease subunit B OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=addB PE=3 SV=2
Length = 1147
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 426 QEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTI 485
+EFR ++ D GF VG I ++ +IERT +K I L +G++ +P+
Sbjct: 549 KEFRDIL----DTGFREAKVGLIPPSIDQILVGDIERTRLKDIKALFFLGVNDGIVPKAN 604
Query: 486 KKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMV 521
++SD +R L + +E+ +KR A++
Sbjct: 605 PGGG--ILSDAERQLFA--DHEIELSPTKRQTAYLT 636
>sp|O15269|SPTC1_HUMAN Serine palmitoyltransferase 1 OS=Homo sapiens GN=SPTLC1 PE=1 SV=1
Length = 473
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 197 PLPPLIH-KVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARR 255
PLP L+ K KY IF S + LG++GR + +H I ID D+ A E A
Sbjct: 256 PLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGINID-DIDLISANMENALASI 314
Query: 256 GGL 258
GG
Sbjct: 315 GGF 317
>sp|Q5R9T5|SPTC1_PONAB Serine palmitoyltransferase 1 OS=Pongo abelii GN=SPTLC1 PE=2 SV=1
Length = 473
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 197 PLPPLIH-KVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARR 255
PLP L+ K KY IF S + LG++GR + +H I ID D+ A E A
Sbjct: 256 PLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGINID-DIDLISANMENALASI 314
Query: 256 GGL 258
GG
Sbjct: 315 GGF 317
>sp|Q60HD1|SPTC1_MACFA Serine palmitoyltransferase 1 OS=Macaca fascicularis GN=SPTLC1 PE=2
SV=1
Length = 473
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 197 PLPPLIH-KVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARR 255
PLP L+ K KY IF S + LG++GR + +H I ID D+ A E A
Sbjct: 256 PLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGINID-DIDLISANMENALASI 314
Query: 256 GGL 258
GG
Sbjct: 315 GGF 317
>sp|B0U4P1|MIAB_XYLFM (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Xylella
fastidiosa (strain M12) GN=miaB PE=3 SV=1
Length = 497
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 30/198 (15%)
Query: 325 KALA-FEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLS-VDRAIRSW 382
+A+A FE IG + + +P S S+ E Y +I + N +P S DR + +
Sbjct: 278 RAIAQFESIGRI-----RFTTSHPLEFSDSLVEAYRDIPQLANHLHLPVQSGSDRILSAM 332
Query: 383 PHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQE----FRQVVSFLEDV 438
G + + K + +L + + I+ S ++ P E F++ + +ED+
Sbjct: 333 KR--GYTALEFKSKIRKL-------RAVRPDISISSDFIIGFPGESDTDFQKTMQLIEDI 383
Query: 439 GFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDR 498
GFD ++ I R P ASN+E +I +HL + I Y +D+ +
Sbjct: 384 GFD-QSFSFIYSRRPGTPASNLEDHTPDEIKR-----TRLEHLQKHINAY----AADISK 433
Query: 499 TLLPRIKYLMEMGLSKRD 516
++ ++ ++ G SK++
Sbjct: 434 RMIGTVQTVLVEGPSKKN 451
>sp|O19104|FANCC_BOVIN Fanconi anemia group C protein homolog OS=Bos taurus GN=FANCC PE=2
SV=1
Length = 567
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 452 CPELFASNIERTLMKKIDFLIG--IGISKDHLP---RTIKKYPELLVSDVDRTLLPRIKY 506
CPE F + E +L+KKI + + HLP T+ E L+S +R L RIK
Sbjct: 216 CPEFFDAVNEASLLKKISLPTSAILCLWLRHLPSLENTMLHLLEKLISS-ERNSLRRIKC 274
Query: 507 LMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLE 566
M+ L A P + +DE+FR L + + L + + R F +LE
Sbjct: 275 FMKDSLRPEAAA-----CHPAIFRVVDEIFRSAL-LETDGAPEVLAGLQVFTRCFVEALE 328
Query: 567 KKIKPRFWVLK 577
K+ K + LK
Sbjct: 329 KENKQLKFALK 339
>sp|Q9PEX2|MIAB_XYLFA (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Xylella
fastidiosa (strain 9a5c) GN=miaB PE=3 SV=1
Length = 497
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 30/198 (15%)
Query: 325 KALA-FEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLS-VDRAIRSW 382
+A+A FE IG + + +P S S+ E Y ++ + N +P S DR + +
Sbjct: 278 RAIAQFESIGRI-----RFTTSHPLEFSDSLVEAYRDVPQLANHLHLPVQSGSDRILSAM 332
Query: 383 PHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQE----FRQVVSFLEDV 438
G + + K + +L + + I+ S ++ P E F++ + +ED+
Sbjct: 333 KR--GYTALEFKSKIRKL-------RAVRPDISISSDFIIGFPGESDTDFQKTMQLIEDI 383
Query: 439 GFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDR 498
GFD ++ I R P ASN+E +I +HL + I Y +D+ +
Sbjct: 384 GFD-QSFSFIYSRRPGTPASNLEDHTPDEIKR-----TRLEHLQKHINTY----AADISK 433
Query: 499 TLLPRIKYLMEMGLSKRD 516
++ ++ ++ G SK++
Sbjct: 434 RMIGTVQTVLVEGPSKKN 451
>sp|A9GUD3|PYRE_SORC5 Orotate phosphoribosyltransferase OS=Sorangium cellulosum (strain
So ce56) GN=pyrE PE=3 SV=1
Length = 192
Score = 33.1 bits (74), Expect = 6.7, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 173 VAFLESLGLSLSSAISIARSLSGEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKH 232
VA +E G L+SA+S+ L G PLP L + KE+ GS R L + R ++
Sbjct: 70 VAGVELGGCPLASAVSLTSFLRGRPLPALYVR----KEVKDHGS---RRLVEGDRGLVPG 122
Query: 233 LSIPIDEDV----QQTLAFFEKIEARRGGLDMLG 262
+ + I EDV TL EK+ R G ++G
Sbjct: 123 MPVAILEDVITTGGSTLKAVEKL--RTAGASVVG 154
>sp|C0ZPX1|HOA1_RHOE4 4-hydroxy-2-oxovalerate aldolase 1 OS=Rhodococcus erythropolis
(strain PR4 / NBRC 100887) GN=RER_07410 PE=3 SV=1
Length = 347
Score = 33.1 bits (74), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 19/155 (12%)
Query: 144 GNGDGEESVLIGF----KEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIARSLSGEPLP 199
G+G G S GF ++++++ A E N K+AFL GL + I IA+
Sbjct: 56 GDGLGGSSFNYGFSKTPEQELIKAAVETATNAKIAFLMLPGLGIKDDIVIAQDNGASICR 115
Query: 200 PLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLD 259
H + I G ER L G MM H SIP ++ +Q AR
Sbjct: 116 IATHCTEADVSIQHFGLARERGLETVGFLMMAH-SIPPEKLAKQ---------AR----- 160
Query: 260 MLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFL 294
++ + Y+V+S L+L V+ +V L
Sbjct: 161 IMADAGCQCVYVVDSAGALVLEQVSDRVEALVQEL 195
>sp|Q6G0R0|RF1_BARQU Peptide chain release factor 1 OS=Bartonella quintana (strain
Toulouse) GN=prfA PE=3 SV=1
Length = 359
Score = 32.7 bits (73), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 111 NSPKYAQMLNDSVQDLEEWKSWSSSSVSNKNDVGNGDGEESV 152
N + Q+L + D+E+ K+ S S S KN VG+GD E +
Sbjct: 265 NRARALQILRARLFDIEQKKAESERSASRKNQVGSGDRSERI 306
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,717,907
Number of Sequences: 539616
Number of extensions: 9662012
Number of successful extensions: 30230
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 30081
Number of HSP's gapped (non-prelim): 179
length of query: 610
length of database: 191,569,459
effective HSP length: 123
effective length of query: 487
effective length of database: 125,196,691
effective search space: 60970788517
effective search space used: 60970788517
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)