Query 007270
Match_columns 610
No_of_seqs 344 out of 1343
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 21:33:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 9.7E-47 3.3E-51 399.6 28.0 310 243-602 21-341 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 6.5E-41 2.2E-45 343.5 19.1 247 357-607 4-262 (270)
3 3mva_O Transcription terminati 100.0 6.3E-37 2.2E-41 324.4 24.8 309 170-575 20-341 (343)
4 4fp9_B Mterf domain-containing 100.0 3.4E-33 1.2E-37 292.7 20.4 208 391-606 44-265 (335)
5 3m66_A Mterf3, mterf domain-co 100.0 2.8E-31 9.6E-36 271.9 20.0 215 324-545 7-224 (270)
6 4fp9_B Mterf domain-containing 99.9 8.3E-24 2.8E-28 221.6 19.7 181 357-549 45-227 (335)
7 4fzv_B Mterf domain-containing 99.2 1.2E-09 4.3E-14 98.3 16.7 167 430-601 35-215 (239)
8 4fzv_B Mterf domain-containing 98.2 1.1E-05 3.8E-10 72.7 11.7 141 328-475 39-181 (239)
9 3ugm_A TAL effector avrbs3/PTH 91.6 2.4 8.2E-05 47.4 14.4 15 437-451 489-503 (1047)
10 4ae4_A Ubiquitin-associated pr 90.2 1.9 6.4E-05 37.8 9.9 38 503-548 79-116 (118)
11 3ugm_A TAL effector avrbs3/PTH 90.2 4.4 0.00015 45.4 14.8 107 368-486 389-502 (1047)
12 4ae4_A Ubiquitin-associated pr 90.2 2.5 8.7E-05 36.9 10.7 35 430-472 78-112 (118)
13 4hpz_A Dtale2; DNA binding pro 88.0 9.7 0.00033 39.5 14.6 361 149-555 6-386 (463)
14 1oqy_A HHR23A, UV excision rep 83.9 0.65 2.2E-05 48.8 3.8 42 357-406 167-208 (368)
15 3ff5_A PEX14P, peroxisomal bio 82.1 1.5 5.1E-05 32.8 4.1 24 500-523 30-53 (54)
16 4hpz_A Dtale2; DNA binding pro 80.4 14 0.00049 38.3 11.9 237 258-522 8-254 (463)
17 3v6t_A DHAX3; tandem repeats, 79.0 56 0.0019 34.3 15.8 110 297-414 65-178 (499)
18 1oqy_A HHR23A, UV excision rep 76.3 1.6 5.3E-05 45.9 3.6 42 287-336 168-209 (368)
19 3v6t_A DHAX3; tandem repeats, 74.8 23 0.00078 37.1 11.5 142 261-413 65-211 (499)
20 2w84_A Peroxisomal membrane pr 73.2 3.3 0.00011 32.6 3.8 25 500-524 35-59 (70)
21 3ff5_A PEX14P, peroxisomal bio 62.3 19 0.00065 26.8 5.8 34 344-381 20-53 (54)
22 2w84_A Peroxisomal membrane pr 52.1 19 0.00066 28.2 4.6 35 344-382 25-59 (70)
23 2cos_A Serine/threonine protei 51.5 20 0.00068 26.6 4.3 42 502-551 11-52 (54)
24 1ify_A HHR23A, UV excision rep 51.0 22 0.00077 25.6 4.6 38 428-473 8-45 (49)
25 2knz_A Ubiquilin-4; cytoplasm, 50.9 17 0.00057 26.8 4.0 39 427-473 10-49 (53)
26 2xzm_O RPS13E; ribosome, trans 50.8 29 0.001 31.3 6.2 69 383-451 25-96 (153)
27 2knz_A Ubiquilin-4; cytoplasm, 50.1 30 0.001 25.4 5.3 40 391-437 9-49 (53)
28 2cos_A Serine/threonine protei 48.9 19 0.00066 26.7 3.9 39 397-441 13-51 (54)
29 1ify_A HHR23A, UV excision rep 46.9 17 0.00058 26.3 3.4 38 500-545 8-45 (49)
30 3u5c_N S27A, YS15, 40S ribosom 44.4 30 0.001 31.2 5.2 34 383-416 23-56 (151)
31 1veg_A NEDD8 ultimate buster-1 44.0 36 0.0012 27.7 5.2 44 501-552 30-73 (83)
32 3e3v_A Regulatory protein RECX 43.3 1.5E+02 0.0051 27.1 10.3 20 504-523 143-162 (177)
33 2ooa_A E3 ubiquitin-protein li 42.9 24 0.00081 26.1 3.5 26 499-524 10-35 (52)
34 1uxc_A FRUR (1-57), fructose r 42.5 38 0.0013 25.9 5.0 47 402-448 9-55 (65)
35 2g3q_A Protein YBL047C; endocy 42.1 18 0.00062 25.1 2.9 35 502-544 6-40 (43)
36 2g3q_A Protein YBL047C; endocy 41.2 21 0.00071 24.8 3.0 22 430-451 6-27 (43)
37 2d9s_A CBL E3 ubiquitin protei 39.7 28 0.00097 25.7 3.6 26 499-524 8-33 (53)
38 2ooa_A E3 ubiquitin-protein li 37.9 41 0.0014 24.8 4.1 25 427-451 10-34 (52)
39 1vg5_A RSGI RUH-014, rhomboid 36.8 24 0.00084 27.9 3.1 39 427-473 28-66 (73)
40 1wgn_A UBAP1, ubiquitin associ 36.2 51 0.0018 25.2 4.6 40 501-548 20-59 (63)
41 1uxc_A FRUR (1-57), fructose r 36.2 40 0.0014 25.7 4.2 49 366-414 8-56 (65)
42 1z96_A DNA-damage, UBA-domain 35.9 35 0.0012 22.9 3.5 24 501-524 5-28 (40)
43 1wji_A Tudor domain containing 35.9 34 0.0011 26.2 3.7 36 430-473 11-46 (63)
44 2jy5_A Ubiquilin-1; UBA, alter 35.5 32 0.0011 25.2 3.4 40 497-544 9-49 (52)
45 2dak_A Ubiquitin carboxyl-term 35.0 53 0.0018 24.9 4.7 40 500-547 9-48 (63)
46 2jy5_A Ubiquilin-1; UBA, alter 34.9 35 0.0012 24.9 3.5 25 427-451 11-36 (52)
47 2cp8_A NEXT to BRCA1 gene 1 pr 34.2 67 0.0023 23.9 4.9 16 391-406 7-22 (54)
48 2oo9_A E3 ubiquitin-protein li 34.1 29 0.00098 24.9 2.7 26 499-524 3-28 (46)
49 2lbc_A Ubiquitin carboxyl-term 33.8 96 0.0033 26.8 6.9 40 501-548 79-118 (126)
50 1wiv_A UBP14, ubiquitin-specif 33.0 63 0.0022 25.4 5.0 38 501-546 30-67 (73)
51 1vg5_A RSGI RUH-014, rhomboid 33.0 29 0.00098 27.5 2.9 39 499-545 28-66 (73)
52 2lbc_A Ubiquitin carboxyl-term 31.8 71 0.0024 27.6 5.7 94 360-473 5-115 (126)
53 3dfg_A Xcrecx, regulatory prot 31.0 2.9E+02 0.0099 24.7 14.3 139 358-525 20-160 (162)
54 1wji_A Tudor domain containing 30.4 38 0.0013 25.8 3.2 38 501-546 10-47 (63)
55 2dai_A Ubadc1, ubiquitin assoc 30.3 74 0.0025 25.7 5.0 40 501-548 30-69 (83)
56 2juj_A E3 ubiquitin-protein li 30.0 39 0.0013 25.1 2.9 26 499-524 6-31 (56)
57 2ekk_A UBA domain from E3 ubiq 29.7 38 0.0013 24.0 2.9 36 501-545 10-45 (47)
58 3j20_Q 30S ribosomal protein S 29.2 70 0.0024 29.1 5.2 35 383-417 23-57 (158)
59 2cp8_A NEXT to BRCA1 gene 1 pr 28.9 80 0.0027 23.5 4.5 42 426-475 7-49 (54)
60 2dag_A Ubiquitin carboxyl-term 28.5 95 0.0032 24.4 5.3 41 501-548 10-50 (74)
61 3idw_A Actin cytoskeleton-regu 27.8 55 0.0019 25.8 3.7 18 504-521 41-58 (72)
62 1veg_A NEDD8 ultimate buster-1 27.6 60 0.0021 26.3 4.0 37 429-473 30-66 (83)
63 1wgn_A UBAP1, ubiquitin associ 27.3 35 0.0012 26.1 2.4 35 430-472 21-55 (63)
64 2dak_A Ubiquitin carboxyl-term 27.2 54 0.0018 24.9 3.5 36 429-472 10-45 (63)
65 2cpw_A CBL-interacting protein 26.6 63 0.0022 24.6 3.8 39 502-547 21-59 (64)
66 1wiv_A UBP14, ubiquitin-specif 26.4 63 0.0022 25.4 3.9 37 429-473 30-66 (73)
67 2crn_A Ubash3A protein; compac 25.3 1E+02 0.0036 23.4 4.9 40 502-548 11-50 (64)
68 3c1d_A Protein ORAA, regulator 25.0 3.6E+02 0.012 23.9 11.5 149 351-524 1-157 (159)
69 1p32_A Mitochondrial matrix pr 24.8 40 0.0014 32.1 2.9 28 85-112 160-187 (209)
70 2bwb_A Ubiquitin-like protein 24.6 99 0.0034 21.9 4.3 13 393-405 7-19 (46)
71 3d5l_A Regulatory protein RECX 23.7 4.6E+02 0.016 24.6 13.6 22 501-522 183-204 (221)
72 2l8n_A Transcriptional repress 23.7 70 0.0024 24.5 3.6 42 402-446 18-59 (67)
73 1whc_A RSGI RUH-027, UBA/UBX 3 23.4 99 0.0034 23.5 4.4 40 502-548 11-50 (64)
74 1yqf_A Hypothetical protein LM 22.5 51 0.0017 31.2 3.2 26 85-110 156-181 (203)
75 1vek_A UBP14, ubiquitin-specif 22.2 1.3E+02 0.0044 24.3 5.1 41 501-548 30-70 (84)
76 3jv1_A P22 protein; MAM33 fami 21.9 50 0.0017 30.7 2.9 28 85-112 135-162 (182)
77 2c35_A Human RPB4, DNA-directe 21.9 1.8E+02 0.006 26.2 6.5 30 390-419 87-116 (152)
78 1vej_A Riken cDNA 4931431F19; 21.6 1E+02 0.0035 24.4 4.2 38 391-435 27-65 (74)
79 1wr1_B Ubiquitin-like protein 21.1 1.2E+02 0.0042 22.6 4.4 14 392-405 16-29 (58)
80 2dkl_A Trinucleotide repeat co 21.0 1.3E+02 0.0044 24.4 4.9 22 394-415 22-43 (85)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=9.7e-47 Score=399.64 Aligned_cols=310 Identities=15% Similarity=0.218 Sum_probs=268.6
Q ss_pred hhhhhhhhhHhhhCCcccCCCCHHHHHHHHHhCCCeeecCccCCHHHHHHHHHhcCCChHHHHHHHhhCCCceecCHHHH
Q 007270 243 QTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAI 322 (610)
Q Consensus 243 ~vl~fl~sL~~kl~gl~~lGls~s~I~~iv~~~P~LL~~~~~~~l~p~l~~L~slGis~~~I~~il~~~P~IL~~s~~~L 322 (610)
+|+.||.+ +|++.++ ++..+|.++..+++ +..++++||+++|++.++|++++.++|.+|.++.+++
T Consensus 21 ~~v~~L~s----------~Gl~~~~---~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l 86 (343)
T 3mva_O 21 DLLKNLLT----------MGVDIDM---ARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENL 86 (343)
T ss_dssp CHHHHHHH----------HTCCHHH---HHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHH
T ss_pred HHHHHHHH----------cCCCHHH---HHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHH
Confidence 46899987 5999655 57778999888886 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhCCcc-cccChhhhHHHHHHHHHhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHH
Q 007270 323 RTKALAFEEIGAVDNDVGKMLLKYPWI-LSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLG 401 (610)
Q Consensus 323 ~~~l~~L~~lG~s~~~v~kll~~~P~l-L~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~ 401 (610)
.++++||+++|++++++.+++.++|++ +..+.+++++++++||+++|++.++|++++.++|++++++.++.++.+++++
T Consensus 87 ~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~ 166 (343)
T 3mva_O 87 SKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQ 166 (343)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHH
Confidence 999999999999999999999999995 4555445899999999999999999999999999999999877788888888
Q ss_pred HcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCC--hhhHHHHHhccCcccccchhhHHHhHHHHHH-HcCCCC
Q 007270 402 ELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFD--RENVGRILGRCPELFASNIERTLMKKIDFLI-GIGISK 478 (610)
Q Consensus 402 elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s--~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~-~lGls~ 478 (610)
++|++ +|++ .+.|.+++.++|.++..+ +++++++++||+ ++|++.
T Consensus 167 ~lgv~-------------------------------~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~ 214 (343)
T 3mva_O 167 AAGLS-------------------------------LGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNS 214 (343)
T ss_dssp HHHHH-------------------------------TTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCH
T ss_pred HhCCC-------------------------------cCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCH
Confidence 76652 3333 445667777777777777 567777777777 377777
Q ss_pred CcHHHHHhhC-CccccccccccchhHHHHHH----HhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCCChhH
Q 007270 479 DHLPRTIKKY-PELLVSDVDRTLLPRIKYLM----EMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQD 553 (610)
Q Consensus 479 ~~i~~~I~~~-P~iL~~sle~~L~~kv~~L~----~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~~~~~ 553 (610)
+++.+++.+. |.++.++. +.++++++++. ++||+.+|+..||.++|++|++|.|+ |++|++||++ ||++.++
T Consensus 215 ~~~~~~i~~~~~~~l~~s~-~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl~~-mg~~~~~ 291 (343)
T 3mva_O 215 EELLVLICGPGAEILDLSN-DYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKK-FNDKIDCLME-ENISISQ 291 (343)
T ss_dssp HHHHHHHHTTTGGGGGCCT-THHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHH-HHHHHHHHHT-TTCCHHH
T ss_pred HHHHHHHhcCChHHhhccH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHH-HHHHHHHHHH-cCCCHHH
Confidence 7777777664 47777775 47888887766 69999999999999999999999996 9999999999 9999999
Q ss_pred HhhcCccccccccchHHhHHHHHHhcCCCCChH--HhhcCChHHHHhhccc
Q 007270 554 VVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLE--EMLGKNDDEFATEFLL 602 (610)
Q Consensus 554 Iv~~P~~L~ySlekRI~pR~~vL~~~Gl~~sl~--~vL~~sdk~F~~~yV~ 602 (610)
|+++|++|+||+| ||+|||.+|+++|+++++. +||++||++|.++|..
T Consensus 292 i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~~~~~~~l~~s~~~F~~~~~~ 341 (343)
T 3mva_O 292 IIENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKK 341 (343)
T ss_dssp HHHSGGGGGSCHH-HHHHHHHHHHTTTCCSSSSCGGGGGSCHHHHHHHHHH
T ss_pred HHhCCHHHhcCHH-HHHHHHHHHHHCCCCCCCCcchhhcCCHHHHHHHHhc
Confidence 9999999999999 9999999999999998888 9999999999999853
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=6.5e-41 Score=343.49 Aligned_cols=247 Identities=21% Similarity=0.354 Sum_probs=227.5
Q ss_pred hHHHHHHHHHhCCCChHHHHHHHHhCCccccCCh-hHHHHHHHHHHHcCCChhHHHHHHHhCCcccccCchhHHHHHHHH
Q 007270 357 NYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCST-SKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFL 435 (610)
Q Consensus 357 ~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~-~~l~~~l~~L~elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL 435 (610)
|-.+++++|.++|++.++|.+....+|.+|++++ +++++.+++|+++|++++++++++.++|.+|..+.+++.++++||
T Consensus 4 ~~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~L 83 (270)
T 3m66_A 4 DHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYL 83 (270)
T ss_dssp HHHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHH
Confidence 3457899999999999999877777778899998 689999999999999999999999999999999988899999999
Q ss_pred HHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHH-HcCCCCCcHHHHHhhCCccccccccccchhHHHHH-HHhCCC
Q 007270 436 EDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLI-GIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYL-MEMGLS 513 (610)
Q Consensus 436 ~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~-~lGls~~~i~~~I~~~P~iL~~sle~~L~~kv~~L-~~lG~s 513 (610)
+++|++++++.+++.++|+++..+++ +++++++||+ ++|++.+++.+++.++|.+++++.+ .++++++++ .++||+
T Consensus 84 ~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s 161 (270)
T 3m66_A 84 HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFK 161 (270)
T ss_dssp HHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCC
T ss_pred HHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCC
Confidence 99999999999999999999999988 6999999995 7999999999999999999999975 799999986 589999
Q ss_pred HHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCCChhHHhhcCccccccccchHHhHHHHHHhcC---C------CCC
Q 007270 514 KRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRN---I------ECS 584 (610)
Q Consensus 514 ~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~~~~~Iv~~P~~L~ySlekRI~pR~~vL~~~G---l------~~s 584 (610)
.+++..|+.++|++|++|.+ +|++|++||+++||++.++|+++|++|+||+| ||+|||.+|+.+| + .++
T Consensus 162 ~~ei~~~v~~~P~il~~s~~-~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~ 239 (270)
T 3m66_A 162 HNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYIS 239 (270)
T ss_dssp HHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCC
T ss_pred HHHHHHHHHhCChhheecHH-HHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCC
Confidence 99999999999999999998 59999999999999999999999999999999 9999999998754 3 268
Q ss_pred hHHhhcCChHHHHhhccccCCCC
Q 007270 585 LEEMLGKNDDEFATEFLLAPSAH 607 (610)
Q Consensus 585 l~~vL~~sdk~F~~~yV~~y~~~ 607 (610)
|.+++.+||++|+++|+..+.|+
T Consensus 240 L~~~l~~sd~~F~~~~~~~~~ee 262 (270)
T 3m66_A 240 LDKLVSIPDEIFCEEIAKASVQD 262 (270)
T ss_dssp HHHHHHSCHHHHHHHTTCSCHHH
T ss_pred HHHHhcCCHHHHHHHHhcCCHHH
Confidence 99999999999999999999875
No 3
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=6.3e-37 Score=324.35 Aligned_cols=309 Identities=17% Similarity=0.228 Sum_probs=228.5
Q ss_pred CccchhhhccCCCcchhhhhhhhcCCCCChhhhhhhhhhhhhhccCCCccccccchhhhhhhcCCCCCChhhhhhhhhhh
Q 007270 170 NGKVAFLESLGLSLSSAISIARSLSGEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFE 249 (610)
Q Consensus 170 n~~~~f~EslG~~~s~~~~~a~~~~~~~L~~l~~kv~fl~~~~~~~~d~~~~l~~~~~~~l~~~~~~~~~da~~vl~fl~ 249 (610)
++++.||+++|+++..+.... | ++ ++.++.++|+ ++.||.
T Consensus 20 ~~~v~~L~s~Gl~~~~~~~~~--------p----~l--------------------------~~~s~~~~~~--vl~fL~ 59 (343)
T 3mva_O 20 EDLLKNLLTMGVDIDMARKRQ--------P----GV--------------------------FHRMITNEQD--LKMFLL 59 (343)
T ss_dssp CCHHHHHHHHTCCHHHHHHHC--------G----GG--------------------------GGCSCCCHHH--HHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHhC--------c----hh--------------------------hccCcccHHH--HHHHHH
Confidence 457889999999988665411 1 11 2234555665 489999
Q ss_pred hhHhhhCCcccCCCCHHHHHHHHHhCCCeeecCccCCHHHHHHHHHhcCCChHHHHHHHhhCCCce-ecCH-HHHHHHHH
Q 007270 250 KIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLI-FWNI-KAIRTKAL 327 (610)
Q Consensus 250 sL~~kl~gl~~lGls~s~I~~iv~~~P~LL~~~~~~~l~p~l~~L~slGis~~~I~~il~~~P~IL-~~s~-~~L~~~l~ 327 (610)
+ +|+++++|++++.++|++|.++++ ++.|+++||+++|++.++|++++.++|++| ..+. +.+.++++
T Consensus 60 ~----------~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~ 128 (343)
T 3mva_O 60 S----------KGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIK 128 (343)
T ss_dssp H----------TTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHH
T ss_pred H----------cCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHH
Confidence 7 699999999999999999999965 699999999999999999999999999954 4444 48999999
Q ss_pred HHHHhCCChHHHHHHHHhCCcccccChhhhHHHHHHHHHhCCCC------hHHHHHHHHhCCccccCChhHHHHHHHHHH
Q 007270 328 AFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVP------KLSVDRAIRSWPHLLGCSTSKLKLMLDQLG 401 (610)
Q Consensus 328 ~L~~lG~s~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~~Gl~------~~~I~~il~~~P~lL~~s~~~l~~~l~~L~ 401 (610)
||+++|++.+++.+++.++|++++.+++.+ ++++++|+++|++ .++|.+++.++|++++++.+++++.+++++
T Consensus 129 fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~ 207 (343)
T 3mva_O 129 FLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLR 207 (343)
T ss_dssp HHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999876 9999999987764 556677777777666666555555555555
Q ss_pred HcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCChhhHHHHHhcc-CcccccchhhHHHhHHHHHH----HcCC
Q 007270 402 ELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRC-PELFASNIERTLMKKIDFLI----GIGI 476 (610)
Q Consensus 402 elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s~~~i~~ll~k~-P~iL~~s~e~~L~~k~~fL~----~lGl 476 (610)
+ .+|++++++..++.+. |.++..+.+ .+++++.|+. ++|+
T Consensus 208 ~----------------------------------~~G~~~~~~~~~i~~~~~~~l~~s~~-~l~~~~~~l~e~~~~lG~ 252 (343)
T 3mva_O 208 S----------------------------------TFNLNSEELLVLICGPGAEILDLSND-YARRSYANIKEKLFSLGC 252 (343)
T ss_dssp H----------------------------------HSCCCHHHHHHHHHTTTGGGGGCCTT-HHHHHHHHHHHHHHTTTC
T ss_pred H----------------------------------HcCCCHHHHHHHHhcCChHHhhccHH-HHHHHHHHHHHHHHHcCC
Confidence 2 2444444444554443 355555543 6666665555 4677
Q ss_pred CCCcHHHHHhhCCccccccccccchhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCCChhHHhh
Q 007270 477 SKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVA 556 (610)
Q Consensus 477 s~~~i~~~I~~~P~iL~~sle~~L~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~~~~~Iv~ 556 (610)
++++|.+|+.++|.+|++|.+ .+++|++||.++|++.++| .++|++|+||.| +|++|++||.+ .|+..+. .
T Consensus 253 s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl~~mg~~~~~i----~~~P~~l~~sle-ri~~R~~~L~~-~g~~~~~--~ 323 (343)
T 3mva_O 253 TEEEVQKFVLSYPDVIFLAEK-KFNDKIDCLMEENISISQI----IENPRVLDSSIS-TLKSRIKELVN-AGCNLST--L 323 (343)
T ss_dssp CHHHHHHHHHTCGGGGGSCHH-HHHHHHHHHHTTTCCHHHH----HHSGGGGGSCHH-HHHHHHHHHHT-TTCCSSS--S
T ss_pred CHHHHHHHHHhCCchhcccHH-HHHHHHHHHHHcCCCHHHH----HhCCHHHhcCHH-HHHHHHHHHHH-CCCCCCC--C
Confidence 777777777777777777765 4788888887788887776 678888888888 57888887764 5765442 1
Q ss_pred cCccccccccchHHhHHHH
Q 007270 557 YPRYFSYSLEKKIKPRFWV 575 (610)
Q Consensus 557 ~P~~L~ySlekRI~pR~~v 575 (610)
+-.+|++| |+++..|+..
T Consensus 324 ~~~~l~~s-~~~F~~~~~~ 341 (343)
T 3mva_O 324 NITLLSWS-KKRYEAKLKK 341 (343)
T ss_dssp CGGGGGSC-HHHHHHHHHH
T ss_pred cchhhcCC-HHHHHHHHhc
Confidence 12556655 4477666653
No 4
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=292.74 Aligned_cols=208 Identities=19% Similarity=0.315 Sum_probs=193.4
Q ss_pred hHHHHHHHHHHHcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHH
Q 007270 391 SKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDF 470 (610)
Q Consensus 391 ~~l~~~l~~L~elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~f 470 (610)
.+++..++.|.++||++.+|++++..+|.++ ..++.+++.+|..+|++.++|+++++++|++|..+++ +|+++++|
T Consensus 44 ~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il---~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 44 LELERVMSSLLDMGFSNAHINELLSVRRGAS---LQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCC---HHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred ccHHHHHHHHHHCCCCHHHHHHHHHhCcccc---hhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 4688888999999999999999999999976 3568889999999999999999999999999999986 89999999
Q ss_pred HHHcCCCCCcHHHHHhhCCccccccccccchhHHHHHH-HhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCC
Q 007270 471 LIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLM-EMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEK 549 (610)
Q Consensus 471 L~~lGls~~~i~~~I~~~P~iL~~sle~~L~~kv~~L~-~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~ 549 (610)
|+++|++.+++.+++.++|.+|+++.+ .+..++.+|. ++||+.++|..||.++|+||++|.+ .|++|++||+++||+
T Consensus 120 L~~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e-~L~~K~efLv~~Mgl 197 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLG-QLEYKFQYAYFRMGI 197 (335)
T ss_dssp HHHTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTTCC
T ss_pred HHHcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHH-HHHHHHHHHHHHhCC
Confidence 999999999999999999999999986 7999999997 6999999999999999999999998 599999999999999
Q ss_pred ChhHHhhcCccccccccchHHhHHHHHHhcCC-------------CCChHHhhcCChHHHHhhccccCCC
Q 007270 550 SLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNI-------------ECSLEEMLGKNDDEFATEFLLAPSA 606 (610)
Q Consensus 550 ~~~~Iv~~P~~L~ySlekRI~pR~~vL~~~Gl-------------~~sl~~vL~~sdk~F~~~yV~~y~~ 606 (610)
++++|++ |.+|+||++ ||+|||.||+.+|. +++|..++.+||++|++++.....|
T Consensus 198 ~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~e 265 (335)
T 4fp9_B 198 KHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVE 265 (335)
T ss_dssp CHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHH
T ss_pred CHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHH
Confidence 9999997 999999999 99999999999886 3579999999999999999876654
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.97 E-value=2.8e-31 Score=271.94 Aligned_cols=215 Identities=13% Similarity=0.255 Sum_probs=118.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHhCCcccccChhhhHHHHHHHHHhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHHHc
Q 007270 324 TKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGEL 403 (610)
Q Consensus 324 ~~l~~L~~lG~s~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~el 403 (610)
+.+++|.++|++..++.+....+|.+|..++++++.++++||+++|++.++|++++.++|.+++++.+++++.+++|+++
T Consensus 7 ~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~L~~~ 86 (270)
T 3m66_A 7 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSK 86 (270)
T ss_dssp HHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHc
Confidence 34444444444444443333333333555555555555555555555555555555555555555554455555555555
Q ss_pred CCChhHHHHHHHhCCcccccCchhHHHHHHHH-HHcCCChhhHHHHHhccCcccccchhhHHHhHHHHH-HHcCCCCCcH
Q 007270 404 GVENKKLGQVIAKSPQLLLRKPQEFRQVVSFL-EDVGFDRENVGRILGRCPELFASNIERTLMKKIDFL-IGIGISKDHL 481 (610)
Q Consensus 404 G~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL-~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL-~~lGls~~~i 481 (610)
|++++++++++.++|++|..+.+++.++++|| +++|++.+++..++.++|+++..+.+ +++++++++ .++|++.++|
T Consensus 87 Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s~~ei 165 (270)
T 3m66_A 87 NFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFKHNEI 165 (270)
T ss_dssp TCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCCHHHH
T ss_pred CCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCCHHHH
Confidence 55555555555555555555555555555555 35555555555555555555555544 456666654 3566666666
Q ss_pred HHHHhhCCccccccccccchhHHHHHH-HhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHH
Q 007270 482 PRTIKKYPELLVSDVDRTLLPRIKYLM-EMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLN 545 (610)
Q Consensus 482 ~~~I~~~P~iL~~sle~~L~~kv~~L~-~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~ 545 (610)
.+++.++|.+|++|. +++++|++||. ++|++.++| .++|++|+||.| +|++|+.|+..
T Consensus 166 ~~~v~~~P~il~~s~-~~l~~k~~fL~~~mg~~~~~i----~~~P~~l~~Sle-ri~pR~~~l~~ 224 (270)
T 3m66_A 166 QHMITRIPKMLTANK-MKLTETFDFVHNVMSIPHHII----VKFPQVFNTRLF-KVKERHLFLTY 224 (270)
T ss_dssp HHHHHHCGGGGTSCH-HHHHHHHHHHHTTSCCCHHHH----HHCGGGGGSCHH-HHHHHHHHHHH
T ss_pred HHHHHhCChhheecH-HHHHHHHHHHHHHhCCCHHHH----HhCchHhhCCHH-HHHHHHHHHHH
Confidence 666666666666664 36666666664 466666655 566666666666 46666666653
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.91 E-value=8.3e-24 Score=221.59 Aligned_cols=181 Identities=20% Similarity=0.370 Sum_probs=145.4
Q ss_pred hHHHHHHHHHhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHHHcCCChhHHHHHHHhCCcccccCchhHHHHHHHHH
Q 007270 357 NYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLE 436 (610)
Q Consensus 357 ~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~ 436 (610)
.+.+++..|+++|++.++|++++..+|.++. .++.+++.+|..+|++++.+++||.++|.+|..+.+++.++++||+
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~---~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~ 121 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASL---QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQ 121 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH---HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccch---hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHH
Confidence 4677778888888888888888888887753 4677778888888888888888888888888888888888888888
Q ss_pred HcCCChhhHHHHHhccCcccccchhhHHHhHHHHHH-HcCCCCCcHHHHHhhCCccccccccccchhHHHHHH-HhCCCH
Q 007270 437 DVGFDRENVGRILGRCPELFASNIERTLMKKIDFLI-GIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLM-EMGLSK 514 (610)
Q Consensus 437 ~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~-~lGls~~~i~~~I~~~P~iL~~sle~~L~~kv~~L~-~lG~s~ 514 (610)
++|++.+++.+++.++|++++.+.+ +++.++.+|. ++|++.++|.+|+.++|.+|++|. +.|++|++||. +||++.
T Consensus 122 ~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~-e~L~~K~efLv~~Mgl~~ 199 (335)
T 4fp9_B 122 KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKH 199 (335)
T ss_dssp HTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTTCCCH
T ss_pred HcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH-HHHHHHHHHHHHHhCCCH
Confidence 8888888888888888888888866 6888888876 588888888888888888888885 47888888887 588888
Q ss_pred HHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCC
Q 007270 515 RDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEK 549 (610)
Q Consensus 515 ~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~ 549 (610)
++| .+ |++|+||.+ .|++|..||+. +|.
T Consensus 200 ~eI----vk-P~~l~ySLe-RIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 200 PDI----VK-SEYLQYSLT-KIKQRHIYLER-LGR 227 (335)
T ss_dssp HHH----HH-TTGGGSCHH-HHHHHHHHHHH-HTS
T ss_pred HHc----cc-cchhhccHH-HHHHHHHHHHH-cCC
Confidence 877 33 888888888 48888888875 454
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.16 E-value=1.2e-09 Score=98.34 Aligned_cols=167 Identities=21% Similarity=0.346 Sum_probs=146.5
Q ss_pred HHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHHcCCCCCcHHHHHhhCCccccccccccchhHHHHHHH
Q 007270 430 QVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLME 509 (610)
Q Consensus 430 ~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~lGls~~~i~~~I~~~P~iL~~sle~~L~~kv~~L~~ 509 (610)
..+.-+--+|+.++-++-++++.|+++...+- .++.+-.+|..+|+.+..+.+++-.+|.++...- +.+.+.+..|++
T Consensus 35 diisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrq-qdindtvrllke 112 (239)
T 4fzv_B 35 DIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKE 112 (239)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-HHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-hhHhHHHHHHHH
Confidence 34455556899999999999999999988865 7899999999999999999999999999998874 578889999985
Q ss_pred -hCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCCChhHHhhcCccccccccchHHhHHHHHHhcCC-------
Q 007270 510 -MGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNI------- 581 (610)
Q Consensus 510 -lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~~~~~Iv~~P~~L~ySlekRI~pR~~vL~~~Gl------- 581 (610)
+-|+..++.+++..+|.+|.-+... ++-|+.|-.-.||...-+|++. .||.||+. +|+.|+-+|+.+|-
T Consensus 113 kclftvqqvtkilhscpsvlredlgq-leykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtpdkk 189 (239)
T 4fzv_B 113 KCLFTVQQVTKILHSCPSVLREDLGQ-LEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKK 189 (239)
T ss_dssp HSCCCHHHHHHHHHHCGGGGTSCTTH-HHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSS
T ss_pred hHHhhHHHHHHHHHhCcHHHHHHHhh-hhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCCcc
Confidence 8899999999999999999998885 8999998877899999999986 69999998 99999999998763
Q ss_pred ------CCChHHhhcCChHHHHhhcc
Q 007270 582 ------ECSLEEMLGKNDDEFATEFL 601 (610)
Q Consensus 582 ------~~sl~~vL~~sdk~F~~~yV 601 (610)
++-+.+++..||.+|+++-.
T Consensus 190 gqtqipnpllkdilrvseaeflarta 215 (239)
T 4fzv_B 190 GQTQIPNPLLKDILRVSEAEFLARTA 215 (239)
T ss_dssp SCCSSCCCCHHHHHTSCHHHHHHHTS
T ss_pred CCccCCChHHHHHHHHhHHHHHHHHh
Confidence 35789999999999998753
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.20 E-value=1.1e-05 Score=72.71 Aligned_cols=141 Identities=13% Similarity=0.221 Sum_probs=75.7
Q ss_pred HHHHhCCChHHHHHHHHhCCcccccChhhhHHHHHHHHHhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHHH-cCCC
Q 007270 328 AFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGE-LGVE 406 (610)
Q Consensus 328 ~L~~lG~s~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~e-lG~~ 406 (610)
-|.-+|+.++-++-++.+.|.+|...+. .+...-.+|+.+|+....+.+++-.||.++++....+...++.+.+ .-|+
T Consensus 39 efillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqqdindtvrllkekclft 117 (239)
T 4fzv_B 39 EFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFT 117 (239)
T ss_dssp HHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHHHHHHSCCC
T ss_pred HHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHHHHHHHHhHHhh
Confidence 3444566666666666666666655543 2555556666666666666666666666666655555555555554 4455
Q ss_pred hhHHHHHHHhCCcccccCchhHHHHHHHHH-HcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHHcC
Q 007270 407 NKKLGQVIAKSPQLLLRKPQEFRQVVSFLE-DVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIG 475 (610)
Q Consensus 407 ~~~l~~il~~~P~lL~~s~~~i~~kv~fL~-~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~lG 475 (610)
-.++.+|+..||.++..+.+.++-++.|-- ++|+...+|.+- .-+..+.. +++.+.-+|.++|
T Consensus 118 vqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivks-----eylqyslt-kikqrhiylerlg 181 (239)
T 4fzv_B 118 VQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKS-----EYLQYSLT-KIKQRHIYLERLG 181 (239)
T ss_dssp HHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHHT-----TGGGSCHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhHH-----HHHHHHHH-HHHHHHhHHHHhc
Confidence 555555555555555555555555554432 455554444321 12333432 4555555555444
No 9
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=91.62 E-value=2.4 Score=47.43 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=9.7
Q ss_pred HcCCChhhHHHHHhc
Q 007270 437 DVGFDRENVGRILGR 451 (610)
Q Consensus 437 ~lG~s~~~i~~ll~k 451 (610)
..||+.++|..|-..
T Consensus 489 ~~gls~~qvvaiA~n 503 (1047)
T 3ugm_A 489 AHGLTPDQVVAIASN 503 (1047)
T ss_dssp HSCCCSHHHHHHHSS
T ss_pred hcCCCHHHHHHHHhc
Confidence 367777777666543
No 10
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=90.23 E-value=1.9 Score=37.77 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcC
Q 007270 503 RIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTME 548 (610)
Q Consensus 503 kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG 548 (610)
.+.-|.+|||+.+.+.++++.+-. .+..-++||....|
T Consensus 79 ~v~~L~eMGF~~~~a~~AL~~~~n--------d~erAlewL~~~~~ 116 (118)
T 4ae4_A 79 LMSKFKEMGFELKDIKEVLLLHNN--------DQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTT--------CHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC--------CHHHHHHHHHHhcc
Confidence 455566677777766666666652 24455666655443
No 11
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=90.21 E-value=4.4 Score=45.40 Aligned_cols=107 Identities=12% Similarity=0.147 Sum_probs=51.0
Q ss_pred CCCChHHHHHHHHhCCccccCC-hhHHHHHHHHHH-HcCCChhHHHHHHHhCCcccccCchhHHHHHHHHH-HcCCChhh
Q 007270 368 EKVPKLSVDRAIRSWPHLLGCS-TSKLKLMLDQLG-ELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLE-DVGFDREN 444 (610)
Q Consensus 368 ~Gl~~~~I~~il~~~P~lL~~s-~~~l~~~l~~L~-elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~-~lG~s~~~ 444 (610)
.|++.++|.++-.. . +.. .+.+...+..+. +.||++.++..|-..+-.- .-.+.+...+-.|+ ..|++.++
T Consensus 389 ~gls~~~vvaiA~~-G---G~qALe~V~~L~p~l~~~~glt~~qvv~IAsn~GGk--QALe~V~~llp~L~~~~glt~aq 462 (1047)
T 3ugm_A 389 HGLTPDQVVAIASN-G---GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGK--QALETVQRLLPVLCQTHGLTPAQ 462 (1047)
T ss_dssp SCCCHHHHHHHHHH-T---HHHHHHHHHHHHHHHHTTSSCCHHHHHHHHSSTTTH--HHHHHHHHHHHHHHTTSCCCHHH
T ss_pred cCCCHHHHHHHhcc-c---chhHHHHHhhccchhhhhcCCCHHHhhhhhccCchH--HHHHHHHHHhHHhhcccCCCHHH
Confidence 56666666655432 0 000 133333333333 4777777776665433210 00122333334444 57888888
Q ss_pred HHHHHhccCcccccchhhHHHhH---HHHHHH-cCCCCCcHHHHHh
Q 007270 445 VGRILGRCPELFASNIERTLMKK---IDFLIG-IGISKDHLPRTIK 486 (610)
Q Consensus 445 i~~ll~k~P~iL~~s~e~~L~~k---~~fL~~-lGls~~~i~~~I~ 486 (610)
|..|-... +. ..-|+.. ...|.. .|++.++|.+|..
T Consensus 463 vVaIAsn~----GG--kQALeaV~~llpvl~~~~gls~~qvvaiA~ 502 (1047)
T 3ugm_A 463 VVAIASHD----GG--KQALETVQQLLPVLCQAHGLTPDQVVAIAS 502 (1047)
T ss_dssp HHHHSSST----TH--HHHHHHHHHHHHHHHHHSCCCSHHHHHHHS
T ss_pred HHHHHhcC----cH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHh
Confidence 87664331 11 1122222 222333 7888888877653
No 12
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=90.18 E-value=2.5 Score=36.89 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHH
Q 007270 430 QVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLI 472 (610)
Q Consensus 430 ~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~ 472 (610)
..+.-|.++||+.+++.++++.+ ..++.+-+++|.
T Consensus 78 ~~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~ 112 (118)
T 4ae4_A 78 QLMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLM 112 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence 45666667777777777666542 224555566665
No 13
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=88.01 E-value=9.7 Score=39.49 Aligned_cols=361 Identities=10% Similarity=0.065 Sum_probs=186.2
Q ss_pred CcchhhchHHHHHHHHhhcCCCccchh---hhccCCCcchhhhhhhhcCCCC-------ChhhhhhhhhhhhhhccCCCc
Q 007270 149 EESVLIGFKEKVVRMAKEKGDNGKVAF---LESLGLSLSSAISIARSLSGEP-------LPPLIHKVKYMKEIFFSGSNT 218 (610)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~n~~~~f---~EslG~~~s~~~~~a~~~~~~~-------L~~l~~kv~fl~~~~~~~~d~ 218 (610)
.++.++++++.=.+.++.+-.+++.-| +--.|+|+..+..|+.| +.. +|.|+--+.-+ ..++
T Consensus 6 ~~l~~lgys~~q~~k~k~~~~s~va~~h~~l~~~g~t~~~i~~is~~--~~al~~va~~y~~l~aal~~l------t~~~ 77 (463)
T 4hpz_A 6 VDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQH--PAALGTVAVKYQDMIAALPEA------THEA 77 (463)
T ss_dssp -CGGGGTCCHHHHHHHCGGGHHHHHHHHHHHHHTTCCHHHHHHHTTS--THHHHHHHTTHHHHHHHSTTC------CHHH
T ss_pred hhHHHhccCHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHhhcc--HhHHHHHHHhhHHHHhhcccc------CHHH
Confidence 457777888776666666666666655 33469999999987764 111 22222111111 0001
Q ss_pred cccccchhhhhhhcCCCCCChhhhhhhhhhhhhHhhhCCcccCCCCHHHHHHHHHhCCCeeecCc-cCCHHHHHHHHHh-
Q 007270 219 ERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSA-ESHVKPVVDFLEI- 296 (610)
Q Consensus 219 ~~~l~~~~~~~l~~~~~~~~~da~~vl~fl~sL~~kl~gl~~lGls~s~I~~iv~~~P~LL~~~~-~~~l~p~l~~L~s- 296 (610)
-..++ ++.++.- ....++....-|... -+|++.++|.+|...= ... =..+......|+.
T Consensus 78 iV~ia-------~~~~g~~--Al~a~~~~~~~L~~~-----p~~l~~~qiv~IA~~G-----g~~Aleav~~~~~~L~~a 138 (463)
T 4hpz_A 78 IVGVG-------KQWSGAC--ALEALLTVAGELRGP-----PLQLDTGQLLKIAKRG-----GVTAVEVHHTWRNALTGA 138 (463)
T ss_dssp HHHHH-------TSTTTTH--HHHHHHHHHHHHHST-----TTCCCHHHHHHHHHHH-----HHHHHHHHHHTHHHHHST
T ss_pred HHHHH-------hccchHH--HHHHHHHHHHHhhcC-----ccCCCHHHHHHHHhhC-----cHHHHHHHHHHHHHHhCC
Confidence 01111 1111110 011123333322211 3699999999988631 100 0112333345554
Q ss_pred -cCCChHHHHHHHhhCCCceecCHHHHHHHHHHHHH-hCCChHHHHHHHHhCCcccccChhhhHHHHHHHHHh-CCCChH
Q 007270 297 -VGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEE-IGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNE-EKVPKL 373 (610)
Q Consensus 297 -lGis~~~I~~il~~~P~IL~~s~~~L~~~l~~L~~-lG~s~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~-~Gl~~~ 373 (610)
+|+++.|+..|-+....- .-.+.+...+..|+. .|++.++|+++-...-. ..--+.+......|.. .|++.+
T Consensus 139 pl~Lsp~qvVaIAsn~GGk--qALeaV~~llpvL~~a~~Ls~~qVVaIAsn~GG---kQALeaV~~llpvl~~~~~Ls~a 213 (463)
T 4hpz_A 139 PLNLTPDQVVAIASNIGGK--QALETVQRLLPVLCQDHGLTPQQVVAIASNGGG---KQALETVQRLLPVLCQAHGLTPD 213 (463)
T ss_dssp TTCCCHHHHHHHHSSTTHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHCCCHH
T ss_pred CcCCCHHHHHHHHhcCccH--HHHHHHHHHHHHHhhhcCCCHHHHHHHhhcCch---HHHHHHHHHHHHHhhccccCCHH
Confidence 799999998887654210 001445555555664 79999999887543221 1111234455556654 899999
Q ss_pred HHHHHHHhCCccccCC-hhHHHHHHHHHHH-cCCChhHHHHHHHhCCcccccCchhHHHHHHHHHH-cCCChhhHHHHHh
Q 007270 374 SVDRAIRSWPHLLGCS-TSKLKLMLDQLGE-LGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLED-VGFDRENVGRILG 450 (610)
Q Consensus 374 ~I~~il~~~P~lL~~s-~~~l~~~l~~L~e-lG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~-lG~s~~~i~~ll~ 450 (610)
+|..|-...-. .. .+.+....-.|+. .|+++.++..|-...-.- .-.+.+..-.-.|+. .|++.++|..|-.
T Consensus 214 qVVaIAsn~GG---kQALeaV~~llpvl~~~~gls~aqVVaIAsn~GGk--QALeaV~~llP~L~~~~gls~~qVVaIAs 288 (463)
T 4hpz_A 214 QVVAIASHDGG---KQALETVQRLLPVLCQDHGLTPQQVVAIASNIGGK--QALETVQRLLPVLCQDHGLTPDQVVAIAS 288 (463)
T ss_dssp HHHHHHSSTTH---HHHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHT
T ss_pred HHHHHhhcccc---HHHHHHHHhhhhhhhhhccCCHHHHHHHhcccchH--HHHHHHHhhchhhhhccCCCHHHhhhhhc
Confidence 99887543311 00 1455555555554 899999988875432110 001223333444444 7999999887744
Q ss_pred ccCcccccchhhHHHhHHHHHHH-cCCCCCcHHHHHhhCCccccccccccchhHHHHHHH-hCCCHHHHHHHHHhcCccc
Q 007270 451 RCPELFASNIERTLMKKIDFLIG-IGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLME-MGLSKRDIAFMVRRFSPLL 528 (610)
Q Consensus 451 k~P~iL~~s~e~~L~~k~~fL~~-lGls~~~i~~~I~~~P~iL~~sle~~L~~kv~~L~~-lG~s~~ev~~mi~r~P~iL 528 (610)
..-.-- --+.+++-.-.|.+ .|++.++|..|-.....- +-+ +.++.-.-.|++ .|++.++|..+-...--
T Consensus 289 N~GGkQ---ALeaV~~l~p~Lr~~~~ls~~qVVaIAsN~GGk--QAL-eaV~~llp~Lr~~~~ls~~qVvaIAsn~GG-- 360 (463)
T 4hpz_A 289 NDGGKQ---ALETVQRLLPVLCQDHGLTPEQVVAIASNGGGK--QAL-ETVQRLLPVLCQAHGLTPDQVVAIASHDGG-- 360 (463)
T ss_dssp STTHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTHH--HHH-HHHHHHHHHHHHHSCCCHHHHHHHHTSTTH--
T ss_pred CccHHH---HHHHHHHHhHHHHhhcCCCHHHhhhhhcCcchH--HHH-HHHHHhhhhcchhccCCHHHhHhhhhcCcc--
Confidence 321100 01134444444554 699999887753222110 001 134444556664 79999998666421100
Q ss_pred ccChhhhHHHHHHHHHHHcCCChhHHh
Q 007270 529 GYSIDEVFRPKLAFLLNTMEKSLQDVV 555 (610)
Q Consensus 529 ~~s~e~~Lk~ki~fL~~~mG~~~~~Iv 555 (610)
.+-.|. ++.-.--|....|++..+|+
T Consensus 361 kQALea-V~~llpvL~~a~gls~aqVV 386 (463)
T 4hpz_A 361 KQALET-VQRLLPVLCQDHGLTPAQAV 386 (463)
T ss_dssp HHHHHH-HHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHH-HHHHhHHHHHHhCCCHHHhh
Confidence 001222 33344455555788887764
No 14
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=83.93 E-value=0.65 Score=48.79 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHHHcCCC
Q 007270 357 NYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVE 406 (610)
Q Consensus 357 ~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~elG~~ 406 (610)
.....|..|.++|++.+++.+.++..-. +....++||-. |++
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~n-------n~~~A~e~L~~-gip 208 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASYN-------NPHRAVEYLLT-GIP 208 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSCS-------STTHHHHTTTT-SST
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHh-CCC
Confidence 3666788888888888888888876531 45556677632 444
No 15
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=82.13 E-value=1.5 Score=32.83 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=20.3
Q ss_pred chhHHHHHHHhCCCHHHHHHHHHh
Q 007270 500 LLPRIKYLMEMGLSKRDIAFMVRR 523 (610)
Q Consensus 500 L~~kv~~L~~lG~s~~ev~~mi~r 523 (610)
+..|+.||++.|++.+||..+++|
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 556899999999999999888876
No 16
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=80.44 E-value=14 Score=38.29 Aligned_cols=237 Identities=13% Similarity=0.134 Sum_probs=144.4
Q ss_pred cccCCCCHHHHHHHHHhCCCeeecCccCCHHHHHHHHHhcCCChHHHHHHHhhCCCceecCHHHHHHHHHHHHH-h-CCC
Q 007270 258 LDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEE-I-GAV 335 (610)
Q Consensus 258 l~~lGls~s~I~~iv~~~P~LL~~~~~~~l~p~l~~L~slGis~~~I~~il~~~P~IL~~s~~~L~~~l~~L~~-l-G~s 335 (610)
|.-||.|+.++.++- |.. -.++...-+.|..-|++..+|..|-.. |. +.+.+..++..|.. + +++
T Consensus 8 l~~lgys~~q~~k~k---~~~-----~s~va~~h~~l~~~g~t~~~i~~is~~-~~----al~~va~~y~~l~aal~~lt 74 (463)
T 4hpz_A 8 LRTLGYSQQQQEKIK---PKV-----RSTVAQHHEALVGHGFTHAHIVALSQH-PA----ALGTVAVKYQDMIAALPEAT 74 (463)
T ss_dssp GGGGTCCHHHHHHHC---GGG-----HHHHHHHHHHHHHTTCCHHHHHHHTTS-TH----HHHHHHTTHHHHHHHSTTCC
T ss_pred HHHhccCHHHHHHhh---HHH-----HHHHHHHHHHHHhcCCCHHHHHHhhcc-Hh----HHHHHHHhhHHHHhhccccC
Confidence 445699999999874 222 234566667789999999999877643 43 23455555555553 3 899
Q ss_pred hHHHHHHHHhCCcccccChhhhHHHHHHHHHh--CCCChHHHHHHHHhCCccccCC-hhHHHHHHHHHHH--cCCChhHH
Q 007270 336 DNDVGKMLLKYPWILSTSIQENYEEILSVFNE--EKVPKLSVDRAIRSWPHLLGCS-TSKLKLMLDQLGE--LGVENKKL 410 (610)
Q Consensus 336 ~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~--~Gl~~~~I~~il~~~P~lL~~s-~~~l~~~l~~L~e--lG~~~~~l 410 (610)
.++|+.+-..+...... +.+.++..-|+. +|++..+|..|.. +. +.. .+.+......|.. ++++++++
T Consensus 75 ~~~iV~ia~~~~g~~Al---~a~~~~~~~L~~~p~~l~~~qiv~IA~-~G---g~~Aleav~~~~~~L~~apl~Lsp~qv 147 (463)
T 4hpz_A 75 HEAIVGVGKQWSGACAL---EALLTVAGELRGPPLQLDTGQLLKIAK-RG---GVTAVEVHHTWRNALTGAPLNLTPDQV 147 (463)
T ss_dssp HHHHHHHHTSTTTTHHH---HHHHHHHHHHHSTTTCCCHHHHHHHHH-HH---HHHHHHHHHHTHHHHHSTTTCCCHHHH
T ss_pred HHHHHHHHhccchHHHH---HHHHHHHHHhhcCccCCCHHHHHHHHh-hC---cHHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 99999987766543321 235556666664 5999999999877 21 111 1444444555554 89999999
Q ss_pred HHHHHhCCcccccCchhHHHHHHHHHH-cCCChhhHHHHHhccCcccccchhhHHHhHHHHHHH-cCCCCCcHHHHHhhC
Q 007270 411 GQVIAKSPQLLLRKPQEFRQVVSFLED-VGFDRENVGRILGRCPELFASNIERTLMKKIDFLIG-IGISKDHLPRTIKKY 488 (610)
Q Consensus 411 ~~il~~~P~lL~~s~~~i~~kv~fL~~-lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~-lGls~~~i~~~I~~~ 488 (610)
..|-...-.- .-.+.+......|+. .|+++++|..+-...-.--. .+ .++.....|.. .|++.++|.++-...
T Consensus 148 VaIAsn~GGk--qALeaV~~llpvL~~a~~Ls~~qVVaIAsn~GGkQA--Le-aV~~llpvl~~~~~Ls~aqVVaIAsn~ 222 (463)
T 4hpz_A 148 VAIASNIGGK--QALETVQRLLPVLCQDHGLTPQQVVAIASNGGGKQA--LE-TVQRLLPVLCQAHGLTPDQVVAIASHD 222 (463)
T ss_dssp HHHHSSTTHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHTSTTHHHH--HH-HHHHHHHHHHHHHCCCHHHHHHHHSST
T ss_pred HHHHhcCccH--HHHHHHHHHHHHHhhhcCCCHHHHHHHhhcCchHHH--HH-HHHHHHHHhhccccCCHHHHHHHhhcc
Confidence 8876543220 001234445555554 89999999877543210000 12 44455555654 799999987754222
Q ss_pred CccccccccccchhHHHHHH-HhCCCHHHHHHHHH
Q 007270 489 PELLVSDVDRTLLPRIKYLM-EMGLSKRDIAFMVR 522 (610)
Q Consensus 489 P~iL~~sle~~L~~kv~~L~-~lG~s~~ev~~mi~ 522 (610)
.. -+-+ +.++.-...|. ..||+.++|..+-.
T Consensus 223 GG--kQAL-eaV~~llpvl~~~~gls~aqVVaIAs 254 (463)
T 4hpz_A 223 GG--KQAL-ETVQRLLPVLCQDHGLTPQQVVAIAS 254 (463)
T ss_dssp TH--HHHH-HHHHHHHHHHHHHSCCCHHHHHHHHS
T ss_pred cc--HHHH-HHHHhhhhhhhhhccCCHHHHHHHhc
Confidence 11 0012 23444455555 37999999977653
No 17
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=79.04 E-value=56 Score=34.26 Aligned_cols=110 Identities=9% Similarity=0.042 Sum_probs=46.0
Q ss_pred cCCChHHHHHHHhhCCCceecCHHHHHHHHHHHHH-hCCChHHHHHHHHhCCcccccChhhhHHHHHHHHHh-CCCChHH
Q 007270 297 VGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEE-IGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNE-EKVPKLS 374 (610)
Q Consensus 297 lGis~~~I~~il~~~P~IL~~s~~~L~~~l~~L~~-lG~s~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~-~Gl~~~~ 374 (610)
+++++.||..|-+.+..- .-.+.+....-.|+. +|++.++|+++-...-. ..--+.+......|.. .|++.++
T Consensus 65 l~ls~~qvvaIA~n~GGk--qAleaV~~l~p~L~~a~gLs~~qVVaIAsn~GG---kqALe~V~~~lpvL~~~~~Ls~~q 139 (499)
T 3v6t_A 65 LNLTPEQVVAIASHDGGK--QALETVQRLLPVLCQAHGLTPQQVVAIASHDGG---KQALETVQRLLPVLCQAHGLTPEQ 139 (499)
T ss_dssp TCCCHHHHHHHHSSTTHH--HHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTH---HHHHHHHHHHHHHHHHTSCCCHHH
T ss_pred cCCCHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhcCCCHHHhhhhhhcCcc---HHHHHHHHHhhHHhhhhcCCCHHH
Confidence 566666666665433110 001223333333333 56666666655322110 0001123333333443 5666666
Q ss_pred HHHHHHhCCccccCC-hhHHHHHHHHHHH-cCCChhHHHHHH
Q 007270 375 VDRAIRSWPHLLGCS-TSKLKLMLDQLGE-LGVENKKLGQVI 414 (610)
Q Consensus 375 I~~il~~~P~lL~~s-~~~l~~~l~~L~e-lG~~~~~l~~il 414 (610)
|..|-...- +.. .+.++..+-.|+. .|++++++..|-
T Consensus 140 VVaIAsn~G---GkQALeaV~~llpvL~~a~gls~~qVvaIA 178 (499)
T 3v6t_A 140 VVAIASHDG---GKQALETVQALLPVLCQAHGLTPEQVVAIA 178 (499)
T ss_dssp HHHHHSSTT---HHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred hHHHhhcCC---cHHHHHHHHHhhHHHHHhcCCCHHHHHHHh
Confidence 655532110 000 1334444444443 666666655543
No 18
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=76.30 E-value=1.6 Score=45.87 Aligned_cols=42 Identities=7% Similarity=0.048 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhhCCCceecCHHHHHHHHHHHHHhCCCh
Q 007270 287 VKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVD 336 (610)
Q Consensus 287 l~p~l~~L~slGis~~~I~~il~~~P~IL~~s~~~L~~~l~~L~~lG~s~ 336 (610)
....++.|.++|+++.++.+.+... . ++....++||.+ |+.+
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~----~---nn~~~A~e~L~~-gip~ 209 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRAS----Y---NNPHRAVEYLLT-GIPG 209 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHS----C---SSTTHHHHTTTT-SSTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHc----C---CCHHHHHHHHHh-CCCc
Confidence 6678889999999999988888765 2 245556777753 5543
No 19
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=74.83 E-value=23 Score=37.13 Aligned_cols=142 Identities=10% Similarity=0.024 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHhCCCeeecCccCCHHHHHHHHHh-cCCChHHHHHHHhhCCCceecCHHHHHHHHHHHHH-hCCChHH
Q 007270 261 LGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEI-VGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEE-IGAVDND 338 (610)
Q Consensus 261 lGls~s~I~~iv~~~P~LL~~~~~~~l~p~l~~L~s-lGis~~~I~~il~~~P~IL~~s~~~L~~~l~~L~~-lG~s~~~ 338 (610)
|+|+++||.+|...+--- ..-..+......|+. +|+++.++..|-+.+..- .-.+.+...+..+.. .|++.++
T Consensus 65 l~ls~~qvvaIA~n~GGk---qAleaV~~l~p~L~~a~gLs~~qVVaIAsn~GGk--qALe~V~~~lpvL~~~~~Ls~~q 139 (499)
T 3v6t_A 65 LNLTPEQVVAIASHDGGK---QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK--QALETVQRLLPVLCQAHGLTPEQ 139 (499)
T ss_dssp TCCCHHHHHHHHSSTTHH---HHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHH--HHHHHHHHHHHHHHHTSCCCHHH
T ss_pred cCCCHHHHHHHHhcCCcH---HHHHHHHHHHHHHHHhcCCCHHHhhhhhhcCccH--HHHHHHHHhhHHhhhhcCCCHHH
Confidence 577777777766443110 000012233334444 777777776665543110 001333333334443 5777777
Q ss_pred HHHHHHhCCcccccChhhhHHHHHHHHH-hCCCChHHHHHHHHhCCccccCC-hhHHHHHHHHHHH-cCCChhHHHHH
Q 007270 339 VGKMLLKYPWILSTSIQENYEEILSVFN-EEKVPKLSVDRAIRSWPHLLGCS-TSKLKLMLDQLGE-LGVENKKLGQV 413 (610)
Q Consensus 339 v~kll~~~P~lL~~s~~~~l~~~v~fL~-~~Gl~~~~I~~il~~~P~lL~~s-~~~l~~~l~~L~e-lG~~~~~l~~i 413 (610)
|+++-.... +..--+.+...+-.|+ ..|++.++|..|-.+... .. .+.++..+-.+++ .|+++.++..|
T Consensus 140 VVaIAsn~G---GkQALeaV~~llpvL~~a~gls~~qVvaIAsN~GG---kQALeaV~~llpvl~~~~gls~~qVVai 211 (499)
T 3v6t_A 140 VVAIASHDG---GKQALETVQALLPVLCQAHGLTPEQVVAIASNGGG---KQALETVQRLLPVLCQAHGLTPQQVVAI 211 (499)
T ss_dssp HHHHHSSTT---HHHHHHHHHHHHHHHHHTSCCCHHHHHHHHSSTTH---HHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred hHHHhhcCC---cHHHHHHHHHhhHHHHHhcCCCHHHHHHHhcccch---HHHHHHHHHhhhhHHhhccCCHHHHHHH
Confidence 666532111 0001122333344444 367777766665432210 00 1333333334444 56666655544
No 20
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=73.21 E-value=3.3 Score=32.56 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.4
Q ss_pred chhHHHHHHHhCCCHHHHHHHHHhc
Q 007270 500 LLPRIKYLMEMGLSKRDIAFMVRRF 524 (610)
Q Consensus 500 L~~kv~~L~~lG~s~~ev~~mi~r~ 524 (610)
+..|+.||++.|++.+||..++++.
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 5668999999999999999888875
No 21
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=62.30 E-value=19 Score=26.84 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=22.8
Q ss_pred HhCCcccccChhhhHHHHHHHHHhCCCChHHHHHHHHh
Q 007270 344 LKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRS 381 (610)
Q Consensus 344 ~~~P~lL~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~ 381 (610)
.+.|.+-... +...++||++-|++.++|..++.+
T Consensus 20 L~dp~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 20 LQNSRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHCTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hCChhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3456655544 455777888888888888777654
No 22
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=52.14 E-value=19 Score=28.23 Aligned_cols=35 Identities=9% Similarity=0.137 Sum_probs=22.9
Q ss_pred HhCCcccccChhhhHHHHHHHHHhCCCChHHHHHHHHhC
Q 007270 344 LKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSW 382 (610)
Q Consensus 344 ~~~P~lL~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~~ 382 (610)
.+.|.+-... +...++||++-|++.++|..++.+.
T Consensus 25 Lqdp~V~~sp----~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 25 LQNSRVRQSP----LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HCSTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hCChhhhhCC----HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 3456555444 4556777887788877777777653
No 23
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=51.52 E-value=20 Score=26.65 Aligned_cols=42 Identities=10% Similarity=0.188 Sum_probs=31.4
Q ss_pred hHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCCCh
Q 007270 502 PRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSL 551 (610)
Q Consensus 502 ~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~~~ 551 (610)
.-++-|.++||+.+.+..++++.- .+-|++.++||.+ |+++-
T Consensus 11 qmlq~L~eMGFd~erae~Alk~Tg-------~~Gle~AmewL~k-~~~~~ 52 (54)
T 2cos_A 11 QMLQELVNAGCDQEMAGRALKQTG-------SRSIEAALEYISK-MSGPS 52 (54)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT-------SCCHHHHHHHHHH-HSCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-------cccHHHHHHHHHH-hcCCC
Confidence 347888899999998888887633 1248999999974 77763
No 24
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=51.04 E-value=22 Score=25.63 Aligned_cols=38 Identities=16% Similarity=0.413 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHH
Q 007270 428 FRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIG 473 (610)
Q Consensus 428 i~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~ 473 (610)
..++++-|.++||+++++..+++.+ ..++..-+++|.+
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRAS--------YNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTT--------TSCSHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 4556677777777777777776652 1134555666653
No 25
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=50.93 E-value=17 Score=26.80 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHcCC-ChhhHHHHHhccCcccccchhhHHHhHHHHHHH
Q 007270 427 EFRQVVSFLEDVGF-DRENVGRILGRCPELFASNIERTLMKKIDFLIG 473 (610)
Q Consensus 427 ~i~~kv~fL~~lG~-s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~ 473 (610)
....+++-|.++|| +++.+..++..+ ..++...+++|.+
T Consensus 10 ~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~ 49 (53)
T 2knz_A 10 RFQQQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 45667777777777 566655555542 1245556666654
No 26
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=50.75 E-value=29 Score=31.32 Aligned_cols=69 Identities=13% Similarity=0.225 Sum_probs=31.7
Q ss_pred CccccCChhHHHHHHHHHHHcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCCh---hhHHHHHhc
Q 007270 383 PHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDR---ENVGRILGR 451 (610)
Q Consensus 383 P~lL~~s~~~l~~~l~~L~elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s~---~~i~~ll~k 451 (610)
|.-+..+.+.+++.+-.|.+-|+++.+|+-++...-.+=....-+=...+++|++-|+.+ +|+..++++
T Consensus 25 P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~LikK 96 (153)
T 2xzm_O 25 PKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKK 96 (153)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHTTCCCSSCHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 444444555555555555555555555555555442221100000012345555555543 555555544
No 27
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=50.11 E-value=30 Score=25.36 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHcCC-ChhHHHHHHHhCCcccccCchhHHHHHHHHHH
Q 007270 391 SKLKLMLDQLGELGV-ENKKLGQVIAKSPQLLLRKPQEFRQVVSFLED 437 (610)
Q Consensus 391 ~~l~~~l~~L~elG~-~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~ 437 (610)
+.....++.|.+||| ++....+++..+- .+++..+++|.+
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~-------gnve~Ave~L~~ 49 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIATG-------GDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHT-------SCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 456666777777777 6665555555331 245555666544
No 28
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=48.93 E-value=19 Score=26.73 Aligned_cols=39 Identities=10% Similarity=0.328 Sum_probs=20.1
Q ss_pred HHHHHHcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCC
Q 007270 397 LDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFD 441 (610)
Q Consensus 397 l~~L~elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s 441 (610)
++.|.++||+++.....+..- +...++..++|+.++++.
T Consensus 13 lq~L~eMGFd~erae~Alk~T------g~~Gle~AmewL~k~~~~ 51 (54)
T 2cos_A 13 LQELVNAGCDQEMAGRALKQT------GSRSIEAALEYISKMSGP 51 (54)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH------TSCCHHHHHHHHHHHSCS
T ss_pred HHHHHHcCCCHHHHHHHHHHh------CcccHHHHHHHHHHhcCC
Confidence 455556666666555554432 112355555665555543
No 29
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=46.94 E-value=17 Score=26.30 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=29.3
Q ss_pred chhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHH
Q 007270 500 LLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLN 545 (610)
Q Consensus 500 L~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~ 545 (610)
-..+++-|.+|||+++++..+++.+- .+ +..-++||.+
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~----~n----~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASY----NN----PHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTT----SC----SHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC----CC----HHHHHHHHHh
Confidence 45688999999999999999988644 22 4556788875
No 30
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=44.38 E-value=30 Score=31.25 Aligned_cols=34 Identities=12% Similarity=0.266 Sum_probs=17.8
Q ss_pred CccccCChhHHHHHHHHHHHcCCChhHHHHHHHh
Q 007270 383 PHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAK 416 (610)
Q Consensus 383 P~lL~~s~~~l~~~l~~L~elG~~~~~l~~il~~ 416 (610)
|.-+..+.+.+++.+-.|.+-|+++.+|+-+++.
T Consensus 23 P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD 56 (151)
T 3u5c_N 23 PAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRD 56 (151)
T ss_dssp CSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhc
Confidence 3444444455555555555555555555555554
No 31
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=44.00 E-value=36 Score=27.68 Aligned_cols=44 Identities=16% Similarity=0.054 Sum_probs=34.2
Q ss_pred hhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCCChh
Q 007270 501 LPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQ 552 (610)
Q Consensus 501 ~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~~~~ 552 (610)
..+++-|++|||+++.+..+++.+-. .++.-++||....|-.++
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~g--------dve~A~e~L~sh~~~ip~ 73 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFGG--------NVQLAAQTLAHHGGSLPP 73 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTTT--------CHHHHHHHHHHHTSSCCT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC--------CHHHHHHHHHhCCCCCch
Confidence 56899999999999999999886441 267789999987773333
No 32
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=43.27 E-value=1.5e+02 Score=27.13 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=14.8
Q ss_pred HHHHHHhCCCHHHHHHHHHh
Q 007270 504 IKYLMEMGLSKRDIAFMVRR 523 (610)
Q Consensus 504 v~~L~~lG~s~~ev~~mi~r 523 (610)
+.||...||+.+.|..++..
T Consensus 143 ~~~L~rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 143 KQSLLTKGFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHH
Confidence 56777888888877777754
No 33
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=42.89 E-value=24 Score=26.06 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=21.3
Q ss_pred cchhHHHHHHHhCCCHHHHHHHHHhc
Q 007270 499 TLLPRIKYLMEMGLSKRDIAFMVRRF 524 (610)
Q Consensus 499 ~L~~kv~~L~~lG~s~~ev~~mi~r~ 524 (610)
.+...++-|+++||+++++.+++...
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a 35 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIA 35 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45678999999999999998888653
No 34
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=42.53 E-value=38 Score=25.88 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=22.1
Q ss_pred HcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCChhhHHHH
Q 007270 402 ELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRI 448 (610)
Q Consensus 402 elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s~~~i~~l 448 (610)
.+|++...+.+++...+.-...+++......+..+++|+.++...+.
T Consensus 9 ~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~~ 55 (65)
T 1uxc_A 9 LAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAG 55 (65)
T ss_dssp HHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-----
T ss_pred HHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 46666666666666555111123444444555555666665554433
No 35
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=42.15 E-value=18 Score=25.14 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=25.8
Q ss_pred hHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHH
Q 007270 502 PRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLL 544 (610)
Q Consensus 502 ~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~ 544 (610)
.+++-|.+|||+++++..+++.+- .+ +..-++||.
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~~----~n----~e~A~~~L~ 40 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKCN----WD----LEAATNFLL 40 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHT----SC----HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC----cC----HHHHHHHHH
Confidence 468889999999999988887642 22 455667775
No 36
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=41.18 E-value=21 Score=24.83 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCChhhHHHHHhc
Q 007270 430 QVVSFLEDVGFDRENVGRILGR 451 (610)
Q Consensus 430 ~kv~fL~~lG~s~~~i~~ll~k 451 (610)
+.++-|.++||+++++.+.+..
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~ 27 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEK 27 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4566666777777666666554
No 37
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.66 E-value=28 Score=25.74 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=21.7
Q ss_pred cchhHHHHHHHhCCCHHHHHHHHHhc
Q 007270 499 TLLPRIKYLMEMGLSKRDIAFMVRRF 524 (610)
Q Consensus 499 ~L~~kv~~L~~lG~s~~ev~~mi~r~ 524 (610)
....+|+-|+++||+++++.+++...
T Consensus 8 ~~e~~I~~L~~lGF~r~~ai~AL~~a 33 (53)
T 2d9s_A 8 QLSSEIERLMSQGYSYQDIQKALVIA 33 (53)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45678999999999999998888653
No 38
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=37.90 E-value=41 Score=24.77 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHcCCChhhHHHHHhc
Q 007270 427 EFRQVVSFLEDVGFDRENVGRILGR 451 (610)
Q Consensus 427 ~i~~kv~fL~~lG~s~~~i~~ll~k 451 (610)
.....++-|.++||+.+++.+.+..
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3445666667777777776666543
No 39
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=36.80 E-value=24 Score=27.90 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHH
Q 007270 427 EFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIG 473 (610)
Q Consensus 427 ~i~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~ 473 (610)
..+++|+-|.+|||+++++..+++.+ ..++..-++||.+
T Consensus 28 ~~ee~I~~L~eMGF~r~~a~~AL~~~--------~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 28 ASEEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 35667788888888888887777652 2246666777763
No 40
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.22 E-value=51 Score=25.18 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=32.1
Q ss_pred hhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcC
Q 007270 501 LPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTME 548 (610)
Q Consensus 501 ~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG 548 (610)
...++-|.+|||+.+...++++... .+++.-.|||-..+.
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~--------~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKG--------ENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC--------SCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHhCCC
Confidence 4568889999999999999998865 257888899876543
No 41
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=36.20 E-value=40 Score=25.72 Aligned_cols=49 Identities=8% Similarity=0.075 Sum_probs=26.3
Q ss_pred HhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHHHcCCChhHHHHHH
Q 007270 366 NEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVI 414 (610)
Q Consensus 366 ~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~elG~~~~~l~~il 414 (610)
+..|++..-|.+++...+.-...+.+..+.+.+..+++|+.+....+.+
T Consensus 8 ~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~~l 56 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGL 56 (65)
T ss_dssp HHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC------
T ss_pred HHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 3467777777777776652112334455555666677888776554443
No 42
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=35.92 E-value=35 Score=22.94 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=19.2
Q ss_pred hhHHHHHHHhCCCHHHHHHHHHhc
Q 007270 501 LPRIKYLMEMGLSKRDIAFMVRRF 524 (610)
Q Consensus 501 ~~kv~~L~~lG~s~~ev~~mi~r~ 524 (610)
..+++-|.++||+++++..+++.+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 457888899999999887777654
No 43
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=35.88 E-value=34 Score=26.18 Aligned_cols=36 Identities=17% Similarity=0.368 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHH
Q 007270 430 QVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIG 473 (610)
Q Consensus 430 ~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~ 473 (610)
+.|+-|.++||+++++.+++..+ ..++..-++||.+
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~--------~~nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 45666777777777776666543 1245566666654
No 44
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=35.47 E-value=32 Score=25.17 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=28.2
Q ss_pred cccchhHHHHHHHhCC-CHHHHHHHHHhcCcccccChhhhHHHHHHHHH
Q 007270 497 DRTLLPRIKYLMEMGL-SKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLL 544 (610)
Q Consensus 497 e~~L~~kv~~L~~lG~-s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~ 544 (610)
+.....+++-|++||| +++.+..+++..-. .+..-++||.
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~g--------n~e~A~e~L~ 49 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALIATGG--------DINAAIERLL 49 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHHHHTT--------CHHHHHHHHT
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCC--------CHHHHHHHHH
Confidence 4567889999999999 88877777765321 2455667664
No 45
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.99 E-value=53 Score=24.87 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=30.7
Q ss_pred chhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHc
Q 007270 500 LLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTM 547 (610)
Q Consensus 500 L~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~m 547 (610)
-..+++-|.+|||+++++..+++.+- .+ ++.-++||.+.+
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~----~n----ve~A~e~L~~~~ 48 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATN----NS----LERAVDWIFSHI 48 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTT----SC----SHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC----CC----HHHHHHHHHhCC
Confidence 35578899999999999999988753 22 566788988754
No 46
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=34.90 E-value=35 Score=24.94 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHcCC-ChhhHHHHHhc
Q 007270 427 EFRQVVSFLEDVGF-DRENVGRILGR 451 (610)
Q Consensus 427 ~i~~kv~fL~~lG~-s~~~i~~ll~k 451 (610)
....+++-|.++|| +++.+..++..
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL~~ 36 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQALIA 36 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45667777777777 66655555543
No 47
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.25 E-value=67 Score=23.86 Aligned_cols=16 Identities=19% Similarity=0.301 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHcCCC
Q 007270 391 SKLKLMLDQLGELGVE 406 (610)
Q Consensus 391 ~~l~~~l~~L~elG~~ 406 (610)
++....++.|.+|||.
T Consensus 7 e~~a~~L~~L~eMGF~ 22 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFC 22 (54)
T ss_dssp TTHHHHHHHHHHHTCC
T ss_pred HhhHHHHHHHHHcCCC
Confidence 3444555666666663
No 48
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=34.12 E-value=29 Score=24.88 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=21.0
Q ss_pred cchhHHHHHHHhCCCHHHHHHHHHhc
Q 007270 499 TLLPRIKYLMEMGLSKRDIAFMVRRF 524 (610)
Q Consensus 499 ~L~~kv~~L~~lG~s~~ev~~mi~r~ 524 (610)
.+...+..|.++||+++++.+++...
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia 28 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIA 28 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 46678899999999999998777543
No 49
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=33.76 E-value=96 Score=26.76 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=30.1
Q ss_pred hhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcC
Q 007270 501 LPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTME 548 (610)
Q Consensus 501 ~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG 548 (610)
...++-|.+|||+++.+..+++.+- . .+..-++||.+.++
T Consensus 79 e~~v~~L~~MGF~~~~a~~AL~~~~----~----~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 79 EEIVAIITSMGFQRNQAIQALRATN----N----NLERALDWIFSHPE 118 (126)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHT----S----CHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC----C----CHHHHHHHHHhCCC
Confidence 4568999999999999998888642 2 25667889986544
No 50
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=33.04 E-value=63 Score=25.38 Aligned_cols=38 Identities=8% Similarity=0.166 Sum_probs=29.5
Q ss_pred hhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHH
Q 007270 501 LPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNT 546 (610)
Q Consensus 501 ~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~ 546 (610)
..+++.|.+|||+++++..+++.+-. +++.-++||.+.
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~~--------nve~Ave~L~~~ 67 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASGG--------DIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS--------CHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC--------CHHHHHHHHHhC
Confidence 45789999999999999888886431 356678888764
No 51
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=33.01 E-value=29 Score=27.51 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=31.2
Q ss_pred cchhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHH
Q 007270 499 TLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLN 545 (610)
Q Consensus 499 ~L~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~ 545 (610)
....+++-|++|||+++++..+++.+= . .+..-++||.+
T Consensus 28 ~~ee~I~~L~eMGF~r~~a~~AL~~~~----~----nve~Ave~Ll~ 66 (73)
T 1vg5_A 28 ASEEQIQKLVAMGFDRTQVEVALAAAD----D----DLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHHT----S----CHHHHHHHHHT
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHhC----C----CHHHHHHHHHH
Confidence 467789999999999999999988643 2 35667888875
No 52
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=31.85 E-value=71 Score=27.61 Aligned_cols=94 Identities=13% Similarity=0.193 Sum_probs=55.0
Q ss_pred HHHHHHHhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHHHcCCChhHHHHHHHhCCcccc----cC---c-------
Q 007270 360 EILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLL----RK---P------- 425 (610)
Q Consensus 360 ~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~elG~~~~~l~~il~~~P~lL~----~s---~------- 425 (610)
..+.-|.++|++.....+.+..+.. ..+...++||-+..-++. + ..|..+. .. .
T Consensus 5 ~~l~~L~~MGF~~~~a~~AL~~t~n------~~~e~A~~wL~~~~~d~d-i-----~epl~~~~~~s~~~~~~~~l~~~~ 72 (126)
T 2lbc_A 5 SSVMQLAEMGFPLEACRKAVYFTGN------MGAEVAFNWIIVHMEEPD-F-----AEPLTMPGYGGAASAGASVFGASG 72 (126)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHTS------CCHHHHHHHHHHGGGCSS-S-----SCTTCCSSCCSSSSSCCCCSTTSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC------CCHHHHHHHHHHhccccc-c-----cccccccccccccccchhhhcccc
Confidence 3567788899999888888876532 146777778755211110 0 0111110 00 0
Q ss_pred -h--hHHHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHH
Q 007270 426 -Q--EFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIG 473 (610)
Q Consensus 426 -~--~i~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~ 473 (610)
+ .-...++-|..+||+.+++.+++..+ ..++..-++||.+
T Consensus 73 ~~~~~~e~~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 73 LDNQPPEEIVAIITSMGFQRNQAIQALRAT--------NNNLERALDWIFS 115 (126)
T ss_dssp CCCCCCHHHHHHHHHHTSCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred cccCcCHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 1 23457788888888888888777652 1245667777764
No 53
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=31.02 E-value=2.9e+02 Score=24.71 Aligned_cols=139 Identities=12% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHHHcCC-ChhHHHHHHHhCCcccccCchhHHHHHHHHH
Q 007270 358 YEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGV-ENKKLGQVIAKSPQLLLRKPQEFRQVVSFLE 436 (610)
Q Consensus 358 l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~elG~-~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~ 436 (610)
....+.+|..-.-+..++..-+... +++.+.+..+++.|.+.|+ ++..++......-. .....-.....-|+
T Consensus 20 ~~~Al~~Ls~r~~s~~EL~~KL~~k----g~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~---~~~~G~~~I~~eL~ 92 (162)
T 3dfg_A 20 VQRALGLLVHREHSKKELNRKLQAR----GIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRA---SSGYGPLHIRAELG 92 (162)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHH---TTTCCHHHHHHHHH
T ss_pred HHHHHHHhhchhhhHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---HccccHHHHHHHHH
Q ss_pred HcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHHcC-CCCCcHHHHHhhCCccccccccccchhHHHHHHHhCCCHH
Q 007270 437 DVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIG-ISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKR 515 (610)
Q Consensus 437 ~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~lG-ls~~~i~~~I~~~P~iL~~sle~~L~~kv~~L~~lG~s~~ 515 (610)
.-|++.+.|..++.... .+....+...++ +..| ....+ .+.-+.-+.||...||+.+
T Consensus 93 ~KGI~~~~I~~al~~~~----~de~e~a~~l~~--Kk~~~~~~~~----------------~~~k~K~~~~L~rrGF~~~ 150 (162)
T 3dfg_A 93 THGLDSDAVSAAMATFE----GDWTENALDLIR--RRFGEDGPVD----------------LAQRRKAADLLARRGFDGN 150 (162)
T ss_dssp HTTCCHHHHHHHHTTCC----SCHHHHHHHHHH--HHHCTTCCCS----------------HHHHHHHHHHHHHTTCCHH
T ss_pred HcCCCHHHHHHHHHhCc----HhHHHHHHHHHH--HhcCCCCCCC----------------HHHHHHHHHHHHHCCCCHH
Q ss_pred HHHHHHHhcC
Q 007270 516 DIAFMVRRFS 525 (610)
Q Consensus 516 ev~~mi~r~P 525 (610)
.|..++...|
T Consensus 151 ~I~~~l~~~~ 160 (162)
T 3dfg_A 151 SIRLATRFDL 160 (162)
T ss_dssp HHHHHTTC--
T ss_pred HHHHHHhcCc
No 54
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.37 E-value=38 Score=25.85 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=29.3
Q ss_pred hhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHH
Q 007270 501 LPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNT 546 (610)
Q Consensus 501 ~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~ 546 (610)
...++.|.+|||+++++..+++.+= . .+..-++||.+.
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~----~----nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG----N----NLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT----S----CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC----C----CHHHHHHHHHHC
Confidence 3578899999999999988887643 1 356778898864
No 55
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.26 E-value=74 Score=25.69 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=30.8
Q ss_pred hhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcC
Q 007270 501 LPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTME 548 (610)
Q Consensus 501 ~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG 548 (610)
...++-|.+|||+++.+.++++.+- . .++.-++||.+.++
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t~----~----nve~A~ewL~~~~~ 69 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLNH----M----SVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT----S----CHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC----C----CHHHHHHHHHHCCC
Confidence 3468899999999999988887642 2 35678899987653
No 56
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=30.04 E-value=39 Score=25.15 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=21.0
Q ss_pred cchhHHHHHHHhCCCHHHHHHHHHhc
Q 007270 499 TLLPRIKYLMEMGLSKRDIAFMVRRF 524 (610)
Q Consensus 499 ~L~~kv~~L~~lG~s~~ev~~mi~r~ 524 (610)
-....+..|+++||+++++.+.+...
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ia 31 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIA 31 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHh
Confidence 35568899999999999998887643
No 57
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.73 E-value=38 Score=24.00 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=27.6
Q ss_pred hhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHH
Q 007270 501 LPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLN 545 (610)
Q Consensus 501 ~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~ 545 (610)
...++-|.+|||+++.+..+++.. + + ++.-++||.+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~----~-n----~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT----S-T----MEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS----C-S----HHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc----C-C----HHHHHHHHHc
Confidence 457889999999999998888874 2 2 4566778764
No 58
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.23 E-value=70 Score=29.09 Aligned_cols=35 Identities=11% Similarity=0.321 Sum_probs=21.4
Q ss_pred CccccCChhHHHHHHHHHHHcCCChhHHHHHHHhC
Q 007270 383 PHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKS 417 (610)
Q Consensus 383 P~lL~~s~~~l~~~l~~L~elG~~~~~l~~il~~~ 417 (610)
|.-+..+++.+++.+-.|.+-|+++.+|+-++...
T Consensus 23 P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~ 57 (158)
T 3j20_Q 23 PIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQ 57 (158)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhcc
Confidence 44455555666666666666666666666666554
No 59
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.93 E-value=80 Score=23.46 Aligned_cols=42 Identities=14% Similarity=0.269 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHcCCCh-hhHHHHHhccCcccccchhhHHHhHHHHHHHcC
Q 007270 426 QEFRQVVSFLEDVGFDR-ENVGRILGRCPELFASNIERTLMKKIDFLIGIG 475 (610)
Q Consensus 426 ~~i~~kv~fL~~lG~s~-~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~lG 475 (610)
+....+++-|.++||.+ +.-.++++++ ..++...++.|...|
T Consensus 7 e~~a~~L~~L~eMGF~D~~~N~~aL~~~--------~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFCDRQLNLRLLKKH--------NYNILQVVTELLQLS 49 (54)
T ss_dssp TTHHHHHHHHHHHTCCCHHHHHHHHTTT--------TTCHHHHHHHHHHHS
T ss_pred HhhHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHhcc
Confidence 35666899999999955 4444555542 225666666666543
No 60
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.48 E-value=95 Score=24.40 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=31.2
Q ss_pred hhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcC
Q 007270 501 LPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTME 548 (610)
Q Consensus 501 ~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG 548 (610)
...++-|.+|||+++.+.++++.+-. . .++.-++||.+.+.
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n------~-~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGN------S-GAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTS------C-CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC------C-CHHHHHHHHHhCCC
Confidence 45788899999999999888876431 1 26778999998654
No 61
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=27.79 E-value=55 Score=25.77 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=12.0
Q ss_pred HHHHHHhCCCHHHHHHHH
Q 007270 504 IKYLMEMGLSKRDIAFMV 521 (610)
Q Consensus 504 v~~L~~lG~s~~ev~~mi 521 (610)
-+.|+++|+...||..+.
T Consensus 41 ~~~Lr~LGi~eGDIIrVm 58 (72)
T 3idw_A 41 NSMLRTLGLREGDIVRVM 58 (72)
T ss_dssp HHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHcCCchhhHHHHH
Confidence 367778888877764444
No 62
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.56 E-value=60 Score=26.31 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHH
Q 007270 429 RQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIG 473 (610)
Q Consensus 429 ~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~ 473 (610)
+.+++-|.+|||+++++..+++.+ ..++...++||..
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t--------~gdve~A~e~L~s 66 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVF--------GGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHT--------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 567777888888888888777652 1246677777774
No 63
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.33 E-value=35 Score=26.07 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHH
Q 007270 430 QVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLI 472 (610)
Q Consensus 430 ~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~ 472 (610)
+.|+-+..+||+.++..+.++.. ..++.+.++||-
T Consensus 21 e~V~~LvsMGFs~~qA~kALKat--------~~NvErAaDWLF 55 (63)
T 1wgn_A 21 QCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLF 55 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence 45677777888888877777653 225666666664
No 64
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.17 E-value=54 Score=24.86 Aligned_cols=36 Identities=19% Similarity=0.472 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHH
Q 007270 429 RQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLI 472 (610)
Q Consensus 429 ~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~ 472 (610)
...++-|.++||+++++.++++.+ ..++..-++||.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t--------~~nve~A~e~L~ 45 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRAT--------NNSLERAVDWIF 45 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence 446666777777777777776653 113555666665
No 65
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.62 E-value=63 Score=24.65 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=29.2
Q ss_pred hHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHc
Q 007270 502 PRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTM 547 (610)
Q Consensus 502 ~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~m 547 (610)
..++-|.+|||+++.+..+++.+-. +.++.-++||.+.+
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~-------~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGG-------RSVQTACDWLFSHS 59 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTT-------SCHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-------CCHHHHHHHHHhCC
Confidence 4688899999999999888876431 13677888887643
No 66
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=26.36 E-value=63 Score=25.36 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHH
Q 007270 429 RQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIG 473 (610)
Q Consensus 429 ~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~ 473 (610)
..+++-|.++||+++++.++++.+ ..++..-++||.+
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t--------~~nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 345666677777777776666542 1145555666653
No 67
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.31 E-value=1e+02 Score=23.43 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=30.5
Q ss_pred hHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcC
Q 007270 502 PRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTME 548 (610)
Q Consensus 502 ~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG 548 (610)
..++-|.+|||+++.+.+++...-. +.++.-++||.+.+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n-------~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 11 SLLEPLLAMGFPVHTALKALAATGR-------KTAEEALAWLHDHCN 50 (64)
T ss_dssp SSHHHHHHTSCCHHHHHHHHHHHTS-------CCHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC-------CCHHHHHHHHHhCCC
Confidence 4678899999999999888875421 136788999997654
No 68
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.97 E-value=3.6e+02 Score=23.88 Aligned_cols=149 Identities=12% Similarity=0.148 Sum_probs=0.0
Q ss_pred ccChhhhHHHHHHHHHhCCCChHHHHHHHHh------CCccccCChhHHHHHHHHHHHcC-CChhHHHHHHHhCCccccc
Q 007270 351 STSIQENYEEILSVFNEEKVPKLSVDRAIRS------WPHLLGCSTSKLKLMLDQLGELG-VENKKLGQVIAKSPQLLLR 423 (610)
Q Consensus 351 ~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~------~P~lL~~s~~~l~~~l~~L~elG-~~~~~l~~il~~~P~lL~~ 423 (610)
+.+...-....+.+|..-.-+..++..-+.. .|....++.+.+..+++.|.+.| +++..++......-. .
T Consensus 1 ~~~~~~a~~~Al~~Ls~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~---~ 77 (159)
T 3c1d_A 1 GPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRS---R 77 (159)
T ss_dssp CHHHHHHHHHHHHHHTTSCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHH---H
T ss_pred CchHHHHHHHHHHHhhcccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH---h
Q ss_pred CchhHHHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHHcCCCCCcHHHHHhhCCccccccccccchhH
Q 007270 424 KPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPR 503 (610)
Q Consensus 424 s~~~i~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~lGls~~~i~~~I~~~P~iL~~sle~~L~~k 503 (610)
..-.-.....-|+.-|++.+.|..++..... +........++ +..|-.... +...+.|
T Consensus 78 ~g~G~~~I~~eL~~KGI~~~~i~~al~~~~~----d~~~~a~~l~~--kk~~~~~~~----------------~~~~~~K 135 (159)
T 3c1d_A 78 KGYGPARIRQELNQKGISREATEKAMREADI----DWAALARDQAT--RKYGEPLPT----------------VFSEKVK 135 (159)
T ss_dssp TTCCHHHHHHHHHHTTCCHHHHHHHHHHHCC----CHHHHHHHHHH--HHHCSSCCC----------------SHHHHHH
T ss_pred CCccHHHHHHHHHHcCCCHHHHHHHHHHcCH----hHHHHHHHHHH--HHcCCCCCC----------------CHHHHHH
Q ss_pred -HHHHHHhCCCHHHHHHHHHhc
Q 007270 504 -IKYLMEMGLSKRDIAFMVRRF 524 (610)
Q Consensus 504 -v~~L~~lG~s~~ev~~mi~r~ 524 (610)
+.||...||+.+.|..++...
T Consensus 136 ~~~~L~rrGF~~~~i~~~l~~~ 157 (159)
T 3c1d_A 136 IQRFLLYRGYLMEDIQDIWRNF 157 (159)
T ss_dssp HHHHHHHTTCCHHHHTTCC---
T ss_pred HHHHHHHCCCCHHHHHHHHHhc
No 69
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=24.81 E-value=40 Score=32.07 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCChhhHhHHhhCC
Q 007270 85 TLTQQAIYDYLSELGISQEDCAFISSNS 112 (610)
Q Consensus 85 ~~a~~a~~~yl~~~~~~~~~a~~i~~~s 112 (610)
..=|.++.+||.+|||..+-|+.|..-+
T Consensus 160 e~Lq~~l~~yLeeRGI~~~la~fl~~y~ 187 (209)
T 1p32_A 160 WALYDHLMDFLADRGVDNTFADELVELS 187 (209)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5679999999999999999998776543
No 70
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=24.62 E-value=99 Score=21.90 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=6.4
Q ss_pred HHHHHHHHHHcCC
Q 007270 393 LKLMLDQLGELGV 405 (610)
Q Consensus 393 l~~~l~~L~elG~ 405 (610)
....++.|.+|||
T Consensus 7 ~~~~i~~L~~MGF 19 (46)
T 2bwb_A 7 YEHQLRQLNDMGF 19 (46)
T ss_dssp THHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 3444455555555
No 71
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=23.69 E-value=4.6e+02 Score=24.63 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=15.9
Q ss_pred hhHHHHHHHhCCCHHHHHHHHH
Q 007270 501 LPRIKYLMEMGLSKRDIAFMVR 522 (610)
Q Consensus 501 ~~kv~~L~~lG~s~~ev~~mi~ 522 (610)
+.-+.||...||+.+.|..++.
T Consensus 183 ~K~~~~L~rrGFs~~~I~~vl~ 204 (221)
T 3d5l_A 183 QKVQQGLTTKGFSSSVYEMIKD 204 (221)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHH
Confidence 3347788888888888866654
No 72
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=23.67 E-value=70 Score=24.49 Aligned_cols=42 Identities=12% Similarity=0.248 Sum_probs=19.4
Q ss_pred HcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCChhhHH
Q 007270 402 ELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVG 446 (610)
Q Consensus 402 elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s~~~i~ 446 (610)
..|++...+.+++...+.+ +++......+...++|+.++...
T Consensus 18 ~aGVS~sTVSr~ln~~~~v---s~~t~~rV~~~a~~lgY~pn~~a 59 (67)
T 2l8n_A 18 KAKVSTATVSRALMNPDKV---SQATRNRVEKAAREVGYLPQPMG 59 (67)
T ss_dssp HTTCCHHHHHHTTTCCCCS---CHHHHHHHHHHHHHHCCCC----
T ss_pred HHCCCHHHHHHHHcCCCCC---CHHHHHHHHHHHHHhCCCccHHH
Confidence 3566666665555544431 33334444455555666554443
No 73
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.43 E-value=99 Score=23.50 Aligned_cols=40 Identities=13% Similarity=0.282 Sum_probs=30.0
Q ss_pred hHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcC
Q 007270 502 PRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTME 548 (610)
Q Consensus 502 ~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG 548 (610)
..++-|.+|||+++.+.++++.+- + ..++.-++||.+.+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~-----~--~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTG-----N--QGIEAAMDWLMEHED 50 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHT-----S--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhc-----C--CCHHHHHHHHHhCCC
Confidence 468889999999999988887531 1 136778899987653
No 74
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=22.46 E-value=51 Score=31.20 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHcCCChhhHhHHhh
Q 007270 85 TLTQQAIYDYLSELGISQEDCAFISS 110 (610)
Q Consensus 85 ~~a~~a~~~yl~~~~~~~~~a~~i~~ 110 (610)
+.=|.++.+||.+|||..+-|+.|..
T Consensus 156 e~Lq~~l~~YLeeRGI~~~la~fl~~ 181 (203)
T 1yqf_A 156 YDLLNCVMTYLEKRGVDEKLGEFVVL 181 (203)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 56789999999999999999987754
No 75
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=22.22 E-value=1.3e+02 Score=24.28 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=30.5
Q ss_pred hhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcC
Q 007270 501 LPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTME 548 (610)
Q Consensus 501 ~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG 548 (610)
...++-|.+|||+++.+.++++..- + ..++.-++||.+.+.
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t~-----n--~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINTS-----N--AGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-----T--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHc-----C--CCHHHHHHHHHhCCC
Confidence 4578899999999999988876532 1 136778999987653
No 76
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=21.92 E-value=50 Score=30.69 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCChhhHhHHhhCC
Q 007270 85 TLTQQAIYDYLSELGISQEDCAFISSNS 112 (610)
Q Consensus 85 ~~a~~a~~~yl~~~~~~~~~a~~i~~~s 112 (610)
+.=|.++.+||.+||+..+-|+.|..-+
T Consensus 135 e~Lq~~l~~yLeeRGI~~~la~fl~~y~ 162 (182)
T 3jv1_A 135 DHLVDSFTSYLSARGVNDTLANFIDQFS 162 (182)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5679999999999999999998776533
No 77
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=21.92 E-value=1.8e+02 Score=26.18 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHcCCChhHHHHHHHhCCc
Q 007270 390 TSKLKLMLDQLGELGVENKKLGQVIAKSPQ 419 (610)
Q Consensus 390 ~~~l~~~l~~L~elG~~~~~l~~il~~~P~ 419 (610)
++.++..++.|..+|+++..+..|+.-+|.
T Consensus 87 ~e~~~~l~e~L~~~~L~~~E~a~L~NL~P~ 116 (152)
T 2c35_A 87 RETIASVRSLLLQKKLHKFELACLANLCPE 116 (152)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHhccCCCC
Confidence 455555555566666666666666666655
No 78
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.63 E-value=1e+02 Score=24.38 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcCC-ChhHHHHHHHhCCcccccCchhHHHHHHHH
Q 007270 391 SKLKLMLDQLGELGV-ENKKLGQVIAKSPQLLLRKPQEFRQVVSFL 435 (610)
Q Consensus 391 ~~l~~~l~~L~elG~-~~~~l~~il~~~P~lL~~s~~~i~~kv~fL 435 (610)
++....++.|++||| ++....++|...-. +++..+++|
T Consensus 27 ~~ye~qi~qL~eMGF~dr~~~~~AL~~t~G-------nve~Ave~L 65 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDANLQALVATDG-------DIHAAIEML 65 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHHHHHHHHTTS-------CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCC-------CHHHHHHHH
No 79
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=21.06 E-value=1.2e+02 Score=22.61 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHcCC
Q 007270 392 KLKLMLDQLGELGV 405 (610)
Q Consensus 392 ~l~~~l~~L~elG~ 405 (610)
+....++.|.+|||
T Consensus 16 ~~~~qi~~L~~MGF 29 (58)
T 1wr1_B 16 RYEHQLRQLNDMGF 29 (58)
T ss_dssp HTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC
Confidence 34445555555555
No 80
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.97 E-value=1.3e+02 Score=24.35 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHH
Q 007270 394 KLMLDQLGELGVENKKLGQVIA 415 (610)
Q Consensus 394 ~~~l~~L~elG~~~~~l~~il~ 415 (610)
.+.++.|.+|||++....+++.
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~ 43 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALK 43 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4455556666666665555553
Done!