Query 007270
Match_columns 610
No_of_seqs 344 out of 1343
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 21:33:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007270.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007270hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qpza1 a.35.1.5 (A:2-58) Puri 55.4 12 0.00087 26.4 5.7 45 402-449 9-53 (57)
2 d1oqya1 a.5.2.1 (A:160-200) DN 54.6 4.1 0.0003 27.0 2.7 27 499-525 3-29 (41)
3 d2hsga1 a.35.1.5 (A:2-58) Gluc 47.6 21 0.0015 25.0 5.9 44 402-448 10-53 (57)
4 d2g3qa1 a.5.2.1 (A:1339-1381) 45.9 6.4 0.00047 26.1 2.5 33 504-544 8-40 (43)
5 d1vg5a_ a.5.2.1 (A:) Rhomboid 44.7 9.6 0.0007 28.3 3.8 39 501-547 30-68 (73)
6 d1oqya1 a.5.2.1 (A:160-200) DN 44.0 8 0.00058 25.4 2.9 25 427-451 3-27 (41)
7 d1qpza1 a.35.1.5 (A:2-58) Puri 41.5 24 0.0017 24.7 5.3 48 366-416 8-55 (57)
8 d1efaa1 a.35.1.5 (A:2-60) Lac 40.8 28 0.0021 24.5 5.7 44 403-449 12-55 (59)
9 d1wgna_ a.5.2.1 (A:) Ubiquitin 39.5 18 0.0013 25.9 4.6 38 501-546 20-57 (63)
10 d1wiva_ a.5.2.1 (A:) Ubiquitin 38.6 21 0.0016 26.3 5.0 38 501-546 30-67 (73)
11 d2hsga1 a.35.1.5 (A:2-58) Gluc 37.8 26 0.0019 24.5 5.1 47 366-415 9-55 (57)
12 d2prra1 a.152.1.3 (A:5-194) Un 37.3 88 0.0064 26.3 10.1 183 230-454 4-190 (190)
13 d1vg5a_ a.5.2.1 (A:) Rhomboid 37.3 11 0.00081 27.9 3.1 37 429-473 30-66 (73)
14 d1wjia_ a.5.2.1 (A:) Tudor dom 35.6 28 0.002 24.7 5.1 39 501-547 10-48 (63)
15 d1efaa1 a.35.1.5 (A:2-60) Lac 35.1 29 0.0021 24.4 5.0 47 366-415 10-56 (59)
16 d2g3qa1 a.5.2.1 (A:1339-1381) 33.8 22 0.0016 23.3 3.7 22 397-418 8-29 (43)
17 d1wgna_ a.5.2.1 (A:) Ubiquitin 32.8 13 0.00092 26.8 2.6 37 429-473 20-56 (63)
18 d1wiva_ a.5.2.1 (A:) Ubiquitin 32.8 20 0.0014 26.5 3.9 37 429-473 30-66 (73)
19 d1uxda_ a.35.1.5 (A:) Fructose 32.5 14 0.001 26.2 2.8 46 401-446 8-53 (59)
20 d1wjia_ a.5.2.1 (A:) Tudor dom 29.9 23 0.0016 25.3 3.7 36 430-473 11-46 (63)
21 d1rxwa1 a.60.7.1 (A:220-324) F 29.3 70 0.0051 24.7 7.1 23 429-451 79-102 (105)
22 d1rw1a_ c.47.1.12 (A:) Hypothe 27.6 18 0.0013 28.7 3.1 88 359-450 14-114 (114)
23 d2crna1 a.5.2.1 (A:8-58) Suppr 26.0 37 0.0027 23.1 4.1 38 504-548 6-43 (51)
24 d1go3f_ a.60.8.2 (F:) RNA poly 23.2 36 0.0026 26.9 4.1 31 389-419 48-78 (107)
25 d1whca_ a.5.2.1 (A:) UBA/UBX 3 23.1 37 0.0027 24.2 3.8 39 503-548 12-50 (64)
26 d1cuka1 a.5.1.1 (A:156-203) DN 22.2 68 0.005 21.4 4.8 24 428-451 5-28 (48)
27 d1yqfa1 d.25.1.1 (A:14-195) Hy 21.9 25 0.0018 30.4 3.2 29 85-113 135-163 (182)
28 d1zcza1 c.24.1.3 (A:1-157) IMP 21.9 28 0.0021 29.5 3.4 61 389-469 10-70 (157)
29 d2prra1 a.152.1.3 (A:5-194) Un 21.3 1E+02 0.0074 25.9 7.3 41 503-553 140-180 (190)
30 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 21.1 60 0.0043 22.0 4.3 18 398-415 17-34 (51)
No 1
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=55.36 E-value=12 Score=26.37 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=23.9
Q ss_pred HcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCChhhHHHHH
Q 007270 402 ELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRIL 449 (610)
Q Consensus 402 elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s~~~i~~ll 449 (610)
..|++...+.++|...|.+ ++++-+...+..+++|+.++.+.+-+
T Consensus 9 ~agVS~sTVSr~ln~~~~v---s~~tr~rV~~~a~~lgY~pn~~Ar~L 53 (57)
T d1qpza1 9 RANVSTTTVSHVINKTRFV---AEETRNAVWAAIKELHYSPSAVARSL 53 (57)
T ss_dssp HHTSCHHHHHHHHHTCSCC---CHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHCcCHHHHHHHHCCCCcc---CHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 3566666666666555542 34444445555556666655555443
No 2
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.61 E-value=4.1 Score=26.97 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=22.0
Q ss_pred cchhHHHHHHHhCCCHHHHHHHHHhcC
Q 007270 499 TLLPRIKYLMEMGLSKRDIAFMVRRFS 525 (610)
Q Consensus 499 ~L~~kv~~L~~lG~s~~ev~~mi~r~P 525 (610)
..+.+++-|.+|||+++++..+++.+-
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~~ 29 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRASY 29 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSC
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 356788889999999999988887753
No 3
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=47.57 E-value=21 Score=25.02 Aligned_cols=44 Identities=25% Similarity=0.470 Sum_probs=22.8
Q ss_pred HcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCChhhHHHH
Q 007270 402 ELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRI 448 (610)
Q Consensus 402 elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s~~~i~~l 448 (610)
..|++...+.++|...|.+ +++.-+...+..+++|+.++...+.
T Consensus 10 ~agvS~~TVSr~Ln~~~~V---s~~tr~rV~~aa~~lgY~pn~~A~~ 53 (57)
T d2hsga1 10 EASVSMATVSRVVNGNPNV---KPSTRKKVLETIERLGYRPNAVARG 53 (57)
T ss_dssp HTTSCHHHHHHHHTTCTTS---CHHHHHHHHHHHHHHTCCSCHHHHH
T ss_pred HHCcCHHHHHHHhCCCCcC---CHHHHHHHHHHHHHHCcCCCHHHHH
Confidence 3556665555555555542 3344444455555566655554443
No 4
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=45.92 E-value=6.4 Score=26.05 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=25.0
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHH
Q 007270 504 IKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLL 544 (610)
Q Consensus 504 v~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~ 544 (610)
++-|.+|||++++..+++.++-. ++..-.++|.
T Consensus 8 i~eL~~MGF~e~~A~~AL~k~~w--------nleaAtN~LL 40 (43)
T d2g3qa1 8 VEELSGMGFTEEEAHNALEKCNW--------DLEAATNFLL 40 (43)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHTS--------CHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHcCC--------CHHHHHHHHH
Confidence 67788999999999999988753 2455566665
No 5
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=44.68 E-value=9.6 Score=28.32 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=30.6
Q ss_pred hhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHc
Q 007270 501 LPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTM 547 (610)
Q Consensus 501 ~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~m 547 (610)
++.++-|++|||+++.+...++.+- .+++.-++||....
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~~--------~n~e~A~~~Ll~~~ 68 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAAD--------DDLTVAVEILMSQS 68 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHT--------SCHHHHHHHHHTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC--------CCHHHHHHHHHhCC
Confidence 5678899999999999988887754 24677888987643
No 6
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.98 E-value=8 Score=25.44 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHcCCChhhHHHHHhc
Q 007270 427 EFRQVVSFLEDVGFDRENVGRILGR 451 (610)
Q Consensus 427 ~i~~kv~fL~~lG~s~~~i~~ll~k 451 (610)
+.++.+.-|.++||+++++...++.
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~ 27 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRA 27 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3556677777777777777777665
No 7
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=41.46 E-value=24 Score=24.74 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=33.1
Q ss_pred HhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHHHcCCChhHHHHHHHh
Q 007270 366 NEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAK 416 (610)
Q Consensus 366 ~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~elG~~~~~l~~il~~ 416 (610)
+..|++..-+.+++...|.+ +.+.-+.+.+..+++|+.+..+.+-|..
T Consensus 8 ~~agVS~sTVSr~ln~~~~v---s~~tr~rV~~~a~~lgY~pn~~Ar~Lr~ 55 (57)
T d1qpza1 8 KRANVSTTTVSHVINKTRFV---AEETRNAVWAAIKELHYSPSAVARSLKV 55 (57)
T ss_dssp HHHTSCHHHHHHHHHTCSCC---CHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHCcCHHHHHHHHCCCCcc---CHHHHHHHHHHHHHHCCCCCHHHHHHhh
Confidence 45688888888888776643 4455556666777888888777766654
No 8
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=40.83 E-value=28 Score=24.47 Aligned_cols=44 Identities=14% Similarity=0.325 Sum_probs=22.7
Q ss_pred cCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCChhhHHHHH
Q 007270 403 LGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRIL 449 (610)
Q Consensus 403 lG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s~~~i~~ll 449 (610)
.|++...+.++|...+.+ ++++.....+...++|+.++.+.+.+
T Consensus 12 agvS~sTVSr~l~~~~~v---s~~tr~rI~~~a~~lgY~pn~~Ar~L 55 (59)
T d1efaa1 12 AGVSYQTVSRVVNQASHV---SAKTREKVEAAMAELNYIPNRVAQQL 55 (59)
T ss_dssp TTSCHHHHHHHHTTCSSC---CTHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HCCCHHHHHHHHCCCCcC---CHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 555555555555554442 34444444555555566555554443
No 9
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.50 E-value=18 Score=25.86 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=29.4
Q ss_pred hhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHH
Q 007270 501 LPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNT 546 (610)
Q Consensus 501 ~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~ 546 (610)
++.++-|.+|||+++++.++++.+= .+++.-++||...
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~~--------~n~e~A~~~Lls~ 57 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKKG--------ENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC--------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHhC
Confidence 3468899999999999988887642 1367788898864
No 10
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=38.62 E-value=21 Score=26.26 Aligned_cols=38 Identities=8% Similarity=0.173 Sum_probs=30.3
Q ss_pred hhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHH
Q 007270 501 LPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNT 546 (610)
Q Consensus 501 ~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~ 546 (610)
...++-|.+|||+++.+.++++.+- .+++.-++||...
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~~--------~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKASG--------GDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT--------SCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHcC--------CCHHHHHHHHHcC
Confidence 4568999999999999999988763 2467788898764
No 11
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=37.82 E-value=26 Score=24.49 Aligned_cols=47 Identities=23% Similarity=0.380 Sum_probs=32.9
Q ss_pred HhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHHHcCCChhHHHHHHH
Q 007270 366 NEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIA 415 (610)
Q Consensus 366 ~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~elG~~~~~l~~il~ 415 (610)
+..|++..-+.+++...|.+ +.+.-+.+.+..+++|+.+....+-+.
T Consensus 9 ~~agvS~~TVSr~Ln~~~~V---s~~tr~rV~~aa~~lgY~pn~~A~~L~ 55 (57)
T d2hsga1 9 REASVSMATVSRVVNGNPNV---KPSTRKKVLETIERLGYRPNAVARGLA 55 (57)
T ss_dssp HHTTSCHHHHHHHHTTCTTS---CHHHHHHHHHHHHHHTCCSCHHHHHHT
T ss_pred HHHCcCHHHHHHHhCCCCcC---CHHHHHHHHHHHHHHCcCCCHHHHHhc
Confidence 45788888888888777643 445555666677788888877665543
No 12
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=37.30 E-value=88 Score=26.34 Aligned_cols=183 Identities=10% Similarity=0.063 Sum_probs=87.3
Q ss_pred hhcCCCCCChhhh-hhhhhhhhhHhhhCCcccCCCCHHHHHHHHHhCCCeeecCccCCHHHHHHHH--HhcCCChHHHHH
Q 007270 230 MKHLSIPIDEDVQ-QTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFL--EIVGVPKDCMGN 306 (610)
Q Consensus 230 l~~~~~~~~~da~-~vl~fl~sL~~kl~gl~~lGls~s~I~~iv~~~P~LL~~~~~~~l~p~l~~L--~slGis~~~I~~ 306 (610)
|++++.+..+++. ++=..++.+..+ .|+-+ .+-++....|.++.. .......+ .+-+++.....-
T Consensus 4 msrlp~~~~~~~~~~~~~~~~~~~~~------~G~vp-n~~~~la~~P~~l~~-----~~~~~~~~~~~~~~L~~~~~El 71 (190)
T d2prra1 4 ISRYPVPELAALPDDIRQRILEVQDK------AGFVP-NVFLTLAHRPDEFRA-----FFAYHDALMLKDGGLTKGEREM 71 (190)
T ss_dssp SCSSCCCCGGGSCHHHHHHHHHHHHH------HSSCC-HHHHHHTTSHHHHHH-----HHHHHHHHHSSCSSSCHHHHHH
T ss_pred CcCCCCCCcccCCHHHHHHHHHHHHH------hCCCH-HHHHHHHhCHHHHHH-----HHHHHHHHHhcccCCCHHHHHH
Confidence 3455555554442 122445554334 25544 455666666655432 11222222 234566554333
Q ss_pred HHhhCCCceecCHHHHHHHHHHHHHhCCChHHHHHHHHhCCcccccChhhhHHHHHHHHHhCCCChHHHHHHHHhCCccc
Q 007270 307 VLLLFPPLIFWNIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLL 386 (610)
Q Consensus 307 il~~~P~IL~~s~~~L~~~l~~L~~lG~s~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL 386 (610)
+.......-.+.. ...-........|.+.+.+..+......-. .+ ...+..+.|..++ ...|.-+
T Consensus 72 i~l~vs~~n~c~Y-C~~~h~~~~~~~g~~~~~~~~i~~~~~~~~-~~--~~~~a~l~~a~~~-----------~~~~~~v 136 (190)
T d2prra1 72 IVVATSAANQCLY-CVVAHGAILRIYEKKPLVADQVAVNYLKAD-IP--PRQRAMLDFALKV-----------CKASHEV 136 (190)
T ss_dssp HHHHHHHHTTCHH-HHHHHHHHHHHHHTCTTHHHHHHHHGGGSS-CC--HHHHHHHHHHHHH-----------HHHGGGC
T ss_pred HHHHHHHHhCCch-HHHHHHHHHHHcccchhhHHHHHhcccccc-cc--HHHHHHHHHHHHH-----------HHhccCC
Confidence 3322222222222 334445566778888887766544322211 11 1233344443321 1112111
Q ss_pred cCChhHHHHHHHHHHHcCCChhHHHHHHHhCCcccccCchhHHHHHHHH-HHcCCChhhHHHHHhccCc
Q 007270 387 GCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFL-EDVGFDRENVGRILGRCPE 454 (610)
Q Consensus 387 ~~s~~~l~~~l~~L~elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL-~~lG~s~~~i~~ll~k~P~ 454 (610)
. ...++.|++.|+++++|..++...-. ..-++.+ ..+|+..++-...+-|.|.
T Consensus 137 ~------d~~~~~L~~~g~s~~eivel~~~va~---------~~~~nr~~~~l~i~~d~e~~~~~~~~~ 190 (190)
T d2prra1 137 N------EADFEALREHGFTDEDAWDIAAITAF---------FGLSNRMANTIGMRPNDEFFLMGRVPK 190 (190)
T ss_dssp C------HHHHHHHHTTTCCHHHHHHHHHHHHH---------HHHHHHHHHHHTCCCCHHHHHTTSSCC
T ss_pred C------HHHHHHHHHcCCCHHHHHHHHHHHHH---------HHHHHHHHHHhCCCCChHHHhcCCCCC
Confidence 1 23456677888999988888775421 1222333 4678887665556666663
No 13
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=37.28 E-value=11 Score=27.94 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHH
Q 007270 429 RQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIG 473 (610)
Q Consensus 429 ~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~ 473 (610)
++.|+-|.+|||++++..+.+..+ ..++..-++||.+
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Ll~ 66 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 456777777888777777776552 2256666777753
No 14
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.59 E-value=28 Score=24.74 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=30.4
Q ss_pred hhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHc
Q 007270 501 LPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTM 547 (610)
Q Consensus 501 ~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~m 547 (610)
...++-|.+|||+++.+.++++.+- . .++.-++||.+..
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~~----~----~~e~A~~wL~~~~ 48 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALMDNG----N----NLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT----S----CHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC----C----CHHHHHHHHHHCC
Confidence 3458889999999999988887653 1 3677889998764
No 15
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=35.06 E-value=29 Score=24.40 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=33.8
Q ss_pred HhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHHHcCCChhHHHHHHH
Q 007270 366 NEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIA 415 (610)
Q Consensus 366 ~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~elG~~~~~l~~il~ 415 (610)
+..|++..-+.+++...+.+ +.+.-+.+.+...++|+.+..+.+.|.
T Consensus 10 ~~agvS~sTVSr~l~~~~~v---s~~tr~rI~~~a~~lgY~pn~~Ar~L~ 56 (59)
T d1efaa1 10 EYAGVSYQTVSRVVNQASHV---SAKTREKVEAAMAELNYIPNRVAQQLA 56 (59)
T ss_dssp HTTTSCHHHHHHHHTTCSSC---CTHHHHHHHHHHHHHTCCCCHHHHHHT
T ss_pred HHHCCCHHHHHHHHCCCCcC---CHHHHHHHHHHHHHHCCCcCHHHHHHh
Confidence 45788888888888666543 445666666777788988887776654
No 16
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=33.82 E-value=22 Score=23.34 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=12.0
Q ss_pred HHHHHHcCCChhHHHHHHHhCC
Q 007270 397 LDQLGELGVENKKLGQVIAKSP 418 (610)
Q Consensus 397 l~~L~elG~~~~~l~~il~~~P 418 (610)
++.|.+|||++++-.+.+.++-
T Consensus 8 i~eL~~MGF~e~~A~~AL~k~~ 29 (43)
T d2g3qa1 8 VEELSGMGFTEEEAHNALEKCN 29 (43)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHcC
Confidence 4455556666655555555543
No 17
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.82 E-value=13 Score=26.82 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHH
Q 007270 429 RQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIG 473 (610)
Q Consensus 429 ~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~ 473 (610)
++.|+-|..+||+++++.+.+..+ ..++..-++||.+
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Lls 56 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 345666666777766666665542 1245556666653
No 18
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=32.80 E-value=20 Score=26.46 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHH
Q 007270 429 RQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIG 473 (610)
Q Consensus 429 ~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~ 473 (610)
...+.-|.++||+++++.+.++.+ ..++..-++||.+
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~Av~~Lls 66 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHc--------CCCHHHHHHHHHc
Confidence 345666677777777777666653 1245566666653
No 19
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.51 E-value=14 Score=26.20 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=27.5
Q ss_pred HHcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCChhhHH
Q 007270 401 GELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVG 446 (610)
Q Consensus 401 ~elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s~~~i~ 446 (610)
+..|++...+.++|...|.-...+++.-+...+..+++|+.++...
T Consensus 8 ~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV~~~a~~lgY~pn~~A 53 (59)
T d1uxda_ 8 RLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVA 53 (59)
T ss_dssp HHHTSCTTHHHHHHHTCGGGTTCTTTTHHHHHHHHHHHTCCCCSCC
T ss_pred HHHCcCHHHHHHHHcCCCCcCcCCHHHHHHHHHHHHHHCCCcCHHH
Confidence 3467777777777776654322344555556666667777665443
No 20
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.92 E-value=23 Score=25.26 Aligned_cols=36 Identities=17% Similarity=0.368 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHH
Q 007270 430 QVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIG 473 (610)
Q Consensus 430 ~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~ 473 (610)
+.|+-|..+||+++.+.+.+..+ ..+++.-++||.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~~wL~~ 46 (63)
T d1wjia_ 11 KALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 45666677777777777666543 1245666777764
No 21
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.32 E-value=70 Score=24.67 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=12.9
Q ss_pred HHHHHHH-HHcCCChhhHHHHHhc
Q 007270 429 RQVVSFL-EDVGFDRENVGRILGR 451 (610)
Q Consensus 429 ~~kv~fL-~~lG~s~~~i~~ll~k 451 (610)
....+|| .++||+.+.+...+.+
T Consensus 79 ~~l~~fL~~e~~F~~~rv~~~l~k 102 (105)
T d1rxwa1 79 EKAIEFLCEEHDFSRERVEKALEK 102 (105)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3344554 4566666666665554
No 22
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.61 E-value=18 Score=28.65 Aligned_cols=88 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHhCC------------CChHHHHHHHHhCCccccCCh-hHHHHHHHHHHHcCCChhHHHHHHHhCCcccccCc
Q 007270 359 EEILSVFNEEK------------VPKLSVDRAIRSWPHLLGCST-SKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKP 425 (610)
Q Consensus 359 ~~~v~fL~~~G------------l~~~~I~~il~~~P~lL~~s~-~~l~~~l~~L~elG~~~~~l~~il~~~P~lL~~s~ 425 (610)
+..++||++.| ++.+++..++...+.--..+. +.....+.......++.+++..++..+|.++.+.-
T Consensus 14 rka~~~L~~~~i~~~~idy~k~pls~~eL~~ll~~~g~~~l~~~r~~~~k~l~~~~~~~ls~~e~i~~i~~~P~LikRPI 93 (114)
T d1rw1a_ 14 KKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLDEAKAIELMLAQPSMIKRPV 93 (114)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHHHHCHHHHBCTTSHHHHTSCHHHHTTCCHHHHHHHHHHCGGGBCSCE
T ss_pred HHHHHHHHHcCCCeEEEEccccCCCHHHHHHHHHhcchHHHhhhhhHHHHHhhhhhhccccHHHHHHHHHhCcceEeCCE
Q ss_pred hhHHHHHHHHHHcCCChhhHHHHHh
Q 007270 426 QEFRQVVSFLEDVGFDRENVGRILG 450 (610)
Q Consensus 426 ~~i~~kv~fL~~lG~s~~~i~~ll~ 450 (610)
=....++ -+||+++++..++.
T Consensus 94 v~~~~~~----~iG~~~e~~~~~ls 114 (114)
T d1rw1a_ 94 LELGGRT----LVGFKPDAYAAALA 114 (114)
T ss_dssp EECSSCE----EESCCHHHHHHHHC
T ss_pred EEECCEE----EECCCHHHHHHHhC
No 23
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.04 E-value=37 Score=23.06 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=27.7
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcC
Q 007270 504 IKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTME 548 (610)
Q Consensus 504 v~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG 548 (610)
++-|.+|||+++...+++...- +. .++.-++||.+.+.
T Consensus 6 v~~L~~MGF~~~~a~~Al~~t~-----n~--~ve~A~~Wl~~h~~ 43 (51)
T d2crna1 6 LEPLLAMGFPVHTALKALAATG-----RK--TAEEALAWLHDHCN 43 (51)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHT-----SC--CHHHHHHHHHHHSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHC-----CC--CHHHHHHHHHHcCC
Confidence 5668899999999988775421 11 36788999987653
No 24
>d1go3f_ a.60.8.2 (F:) RNA polymerase II subunit RBP4 (RpoF) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=23.19 E-value=36 Score=26.87 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=23.4
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHHHhCCc
Q 007270 389 STSKLKLMLDQLGELGVENKKLGQVIAKSPQ 419 (610)
Q Consensus 389 s~~~l~~~l~~L~elG~~~~~l~~il~~~P~ 419 (610)
+++.....++.|.++|+.+....+|..-+|.
T Consensus 48 ~~e~~~~l~~~L~~~~~~~~~aakIanL~P~ 78 (107)
T d1go3f_ 48 DKEEAKKLVEELISLGIDEKTAVKIADILPE 78 (107)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence 4566777777777788888888888877776
No 25
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.06 E-value=37 Score=24.17 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcC
Q 007270 503 RIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTME 548 (610)
Q Consensus 503 kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG 548 (610)
.++-|.+|||+++...+.++.. .+. .++.-++||.+.+.
T Consensus 12 ~l~~L~~MGF~~~~a~~AL~~t-----~n~--~~e~A~~Wl~~h~~ 50 (64)
T d1whca_ 12 ALESLIEMGFPRGRAEKALALT-----GNQ--GIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH-----TSC--CHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHh-----CCC--CHHHHHHHHHHCCC
Confidence 5778889999999998887743 121 36789999998764
No 26
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.23 E-value=68 Score=21.39 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCChhhHHHHHhc
Q 007270 428 FRQVVSFLEDVGFDRENVGRILGR 451 (610)
Q Consensus 428 i~~kv~fL~~lG~s~~~i~~ll~k 451 (610)
..+.++-|..|||++.+..+++.+
T Consensus 5 ~~eAi~AL~~LGY~~~ea~~av~~ 28 (48)
T d1cuka1 5 EQEAVARLVALGYKPQEASRMVSK 28 (48)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445666677777777777777765
No 27
>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689 {Leishmania major [TaxId: 5664]}
Probab=21.94 E-value=25 Score=30.40 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCChhhHhHHhhCCH
Q 007270 85 TLTQQAIYDYLSELGISQEDCAFISSNSP 113 (610)
Q Consensus 85 ~~a~~a~~~yl~~~~~~~~~a~~i~~~sp 113 (610)
..=|.++.+||.+||+...-|+.|..-|-
T Consensus 135 e~Lq~~l~~yLeeRGId~~la~fl~~~~~ 163 (182)
T d1yqfa1 135 YDLLNCVMTYLEKRGVDEKLGEFVVLYSF 163 (182)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 56688999999999999999988765443
No 28
>d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]}
Probab=21.86 E-value=28 Score=29.54 Aligned_cols=61 Identities=23% Similarity=0.329 Sum_probs=43.7
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHH
Q 007270 389 STSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKI 468 (610)
Q Consensus 389 s~~~l~~~l~~L~elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~ 468 (610)
+.+.+.+..+.|.++|+. ++ .+ ...-++|++.|+...+|.+ +..+|.++...+ ++|.|++
T Consensus 10 DK~~l~~la~~L~~~g~~-------------Ii-sT----gGTak~L~~~Gi~v~~Vs~-~Tg~peil~gRv-KTLhp~i 69 (157)
T d1zcza1 10 EKEKYLDILRELHEKGWE-------------IW-AS----SGTAKFLKSNGIEANDVST-ITGFENLLGGLV-KTLHPEI 69 (157)
T ss_dssp STGGGHHHHHHHHHTTCE-------------EE-EC----HHHHHHHHHTTCCCEEGGG-GSCCCCGGGGTT-TTCCHHH
T ss_pred cccchHHHHHHHHHCCCE-------------EE-Ec----ChHHHHHHHhhhhhhHHHH-HhhHHHHHHhhh-ccchHHH
Confidence 346777788888888874 11 11 2356788899999888876 458999998886 4888875
Q ss_pred H
Q 007270 469 D 469 (610)
Q Consensus 469 ~ 469 (610)
.
T Consensus 70 ~ 70 (157)
T d1zcza1 70 F 70 (157)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=21.30 E-value=1e+02 Score=25.91 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCCChhH
Q 007270 503 RIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQD 553 (610)
Q Consensus 503 kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~~~~~ 553 (610)
-++.|++.||+.++|.+++...- .-.-+..+.+.+|.++++
T Consensus 140 ~~~~L~~~g~s~~eivel~~~va----------~~~~~nr~~~~l~i~~d~ 180 (190)
T d2prra1 140 DFEALREHGFTDEDAWDIAAITA----------FFGLSNRMANTIGMRPND 180 (190)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHH----------HHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHH----------HHHHHHHHHHHhCCCCCh
Confidence 47888889999999988875311 122334455677887765
No 30
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.09 E-value=60 Score=21.99 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=8.2
Q ss_pred HHHHHcCCChhHHHHHHH
Q 007270 398 DQLGELGVENKKLGQVIA 415 (610)
Q Consensus 398 ~~L~elG~~~~~l~~il~ 415 (610)
+.|.+|||+++...+.+.
T Consensus 17 ~~L~~MGF~~~~a~~AL~ 34 (51)
T d2cpwa1 17 DVLLSMGFPRARAQKALA 34 (51)
T ss_dssp HHHHHHTCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 334445555544444443
Done!