Query 007275
Match_columns 609
No_of_seqs 380 out of 3247
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 21:22:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02825 amino-acid N-acetyltr 100.0 3.9E-98 8E-103 818.8 51.6 508 83-596 1-515 (515)
2 TIGR01890 N-Ac-Glu-synth amino 100.0 1.5E-75 3.2E-80 639.1 45.7 428 83-595 1-429 (429)
3 PRK05279 N-acetylglutamate syn 100.0 1.1E-72 2.3E-77 619.0 46.8 434 80-595 6-441 (441)
4 COG0548 ArgB Acetylglutamate k 100.0 3.3E-53 7.2E-58 425.0 29.6 259 98-444 1-264 (265)
5 cd04237 AAK_NAGS-ABP AAK_NAGS- 100.0 6.9E-52 1.5E-56 427.4 30.1 278 82-443 1-280 (280)
6 CHL00202 argB acetylglutamate 100.0 7.6E-51 1.6E-55 420.7 31.6 274 80-444 4-283 (284)
7 PLN02512 acetylglutamate kinas 100.0 1.1E-48 2.5E-53 408.7 31.9 277 79-445 27-309 (309)
8 PRK00942 acetylglutamate kinas 100.0 7.6E-47 1.6E-51 391.5 30.0 277 80-446 4-283 (283)
9 cd04250 AAK_NAGK-C AAK_NAGK-C: 100.0 1.1E-45 2.4E-50 381.9 29.1 269 87-443 2-279 (279)
10 KOG2436 Acetylglutamate kinase 100.0 1.3E-46 2.8E-51 396.8 14.3 437 79-535 74-519 (520)
11 PRK04531 acetylglutamate kinas 100.0 1.2E-42 2.7E-47 372.5 32.2 333 75-561 18-356 (398)
12 cd04252 AAK_NAGK-fArgBP AAK_NA 100.0 2.6E-41 5.7E-46 343.3 27.7 244 102-443 1-248 (248)
13 cd04236 AAK_NAGS-Urea AAK_NAGS 100.0 4.9E-41 1.1E-45 342.4 23.9 255 74-443 13-271 (271)
14 cd04238 AAK_NAGK-like AAK_NAGK 100.0 2.2E-40 4.8E-45 338.5 26.7 253 102-443 1-256 (256)
15 PRK14058 acetylglutamate/acety 100.0 3.5E-39 7.6E-44 331.5 28.1 250 101-445 1-267 (268)
16 PRK12352 putative carbamate ki 100.0 3.9E-39 8.4E-44 334.8 25.1 259 100-445 3-315 (316)
17 cd04251 AAK_NAGK-UC AAK_NAGK-U 100.0 1.4E-38 2.9E-43 325.1 26.9 244 102-443 1-257 (257)
18 cd04249 AAK_NAGK-NC AAK_NAGK-N 100.0 1.2E-38 2.7E-43 324.9 26.2 248 102-443 1-252 (252)
19 TIGR00761 argB acetylglutamate 100.0 1.1E-36 2.3E-41 306.8 25.1 200 101-317 1-203 (231)
20 cd04241 AAK_FomA-like AAK_FomA 100.0 1.6E-33 3.6E-38 287.2 22.7 238 101-443 1-252 (252)
21 COG0263 ProB Glutamate 5-kinas 100.0 2.8E-33 6.1E-38 286.6 20.5 238 100-447 7-261 (369)
22 PRK12454 carbamate kinase-like 100.0 1.6E-32 3.5E-37 283.0 23.4 257 100-445 3-313 (313)
23 PRK12686 carbamate kinase; Rev 100.0 1.5E-32 3.3E-37 283.7 22.2 256 99-444 2-311 (312)
24 PRK12353 putative amino acid k 100.0 7.4E-32 1.6E-36 281.9 24.9 261 99-445 2-314 (314)
25 TIGR00746 arcC carbamate kinas 100.0 1.2E-31 2.7E-36 278.3 23.3 255 100-444 1-309 (310)
26 cd02115 AAK Amino Acid Kinases 100.0 3.2E-31 6.8E-36 269.1 19.7 237 103-443 1-248 (248)
27 COG0549 ArcC Carbamate kinase 100.0 2.4E-30 5.2E-35 257.1 21.6 258 100-445 1-312 (312)
28 PRK09411 carbamate kinase; Rev 100.0 5.2E-30 1.1E-34 261.6 20.5 245 100-444 2-296 (297)
29 cd04235 AAK_CK AAK_CK: Carbama 100.0 1.9E-29 4.1E-34 260.7 22.3 253 101-444 1-308 (308)
30 PRK13402 gamma-glutamyl kinase 100.0 1.4E-29 3.1E-34 269.2 20.2 238 99-446 5-258 (368)
31 PRK12354 carbamate kinase; Rev 100.0 2E-29 4.3E-34 259.4 19.4 250 101-446 2-301 (307)
32 PRK05429 gamma-glutamyl kinase 100.0 8.2E-29 1.8E-33 265.3 23.2 237 99-446 8-262 (372)
33 cd04256 AAK_P5CS_ProBA AAK_P5C 100.0 6.8E-29 1.5E-33 256.4 21.4 244 99-444 8-284 (284)
34 PTZ00489 glutamate 5-kinase; P 100.0 1.8E-28 3.9E-33 250.1 22.2 234 99-446 8-260 (264)
35 PF00696 AA_kinase: Amino acid 100.0 1.2E-28 2.6E-33 249.2 20.1 192 100-317 1-211 (242)
36 cd04242 AAK_G5K_ProB AAK_G5K_P 100.0 2.3E-28 4.9E-33 249.2 21.2 234 101-444 1-251 (251)
37 PRK12314 gamma-glutamyl kinase 100.0 5.6E-28 1.2E-32 247.8 21.1 236 99-445 9-264 (266)
38 KOG1154 Gamma-glutamyl kinase 100.0 1.1E-28 2.4E-33 238.0 14.6 244 100-446 10-276 (285)
39 TIGR01027 proB glutamate 5-kin 100.0 5.6E-28 1.2E-32 257.9 20.4 235 100-445 1-253 (363)
40 cd04246 AAK_AK-DapG-like AAK_A 99.9 1.5E-25 3.1E-30 227.0 23.6 188 102-317 2-203 (239)
41 cd04261 AAK_AKii-LysC-BS AAK_A 99.9 1.5E-25 3.3E-30 226.8 23.3 190 101-317 1-203 (239)
42 cd04260 AAK_AKi-DapG-BS AAK_AK 99.9 5.9E-25 1.3E-29 223.1 23.1 190 101-318 1-209 (244)
43 TIGR01092 P5CS delta l-pyrroli 99.9 5.2E-25 1.1E-29 253.8 20.9 247 99-446 7-276 (715)
44 COG1608 Predicted archaeal kin 99.9 1.6E-24 3.4E-29 211.7 19.5 237 102-444 3-251 (252)
45 PLN02418 delta-1-pyrroline-5-c 99.9 2.3E-24 5E-29 248.0 22.7 245 99-446 15-284 (718)
46 cd04234 AAK_AK AAK_AK: Amino A 99.9 3.4E-23 7.3E-28 208.1 19.1 176 101-317 1-190 (227)
47 PRK00358 pyrH uridylate kinase 99.9 1.3E-22 2.7E-27 204.5 22.5 215 100-444 1-231 (231)
48 cd04239 AAK_UMPK-like AAK_UMPK 99.9 1E-22 2.2E-27 204.9 21.2 214 101-444 1-229 (229)
49 cd04255 AAK_UMPK-MosAB AAK_UMP 99.9 2.3E-22 5.1E-27 205.4 20.8 212 100-444 31-262 (262)
50 PRK08210 aspartate kinase I; R 99.9 3.8E-22 8.3E-27 216.9 22.2 191 100-318 2-211 (403)
51 PRK14558 pyrH uridylate kinase 99.9 8.9E-22 1.9E-26 198.3 22.4 216 100-446 1-231 (231)
52 PRK06635 aspartate kinase; Rev 99.9 1.7E-21 3.6E-26 212.0 23.5 191 100-317 2-205 (404)
53 TIGR00656 asp_kin_monofn aspar 99.9 2.2E-21 4.7E-26 210.9 22.4 192 101-318 2-207 (401)
54 PRK08841 aspartate kinase; Val 99.9 6.1E-21 1.3E-25 205.7 24.9 193 100-318 2-206 (392)
55 cd04254 AAK_UMPK-PyrH-Ec UMP k 99.9 2.6E-21 5.7E-26 194.9 19.9 215 100-444 1-231 (231)
56 COG1246 ArgA N-acetylglutamate 99.9 3.6E-22 7.8E-27 184.0 9.9 147 450-596 2-149 (153)
57 TIGR02075 pyrH_bact uridylate 99.9 1.7E-20 3.6E-25 189.3 21.6 215 100-444 2-233 (233)
58 TIGR02076 pyrH_arch uridylate 99.9 2E-20 4.3E-25 187.3 20.7 210 102-444 1-221 (221)
59 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.9 1.9E-20 4.1E-25 187.5 19.7 210 101-444 1-221 (221)
60 PRK07431 aspartate kinase; Pro 99.9 5.5E-20 1.2E-24 209.0 24.0 191 100-317 2-207 (587)
61 PRK14557 pyrH uridylate kinase 99.8 2.3E-18 5E-23 174.6 23.7 217 100-447 5-240 (247)
62 cd04240 AAK_UC AAK_UC: Unchara 99.8 7.1E-19 1.5E-23 173.6 19.0 149 103-312 1-157 (203)
63 TIGR00657 asp_kinases aspartat 99.8 1.3E-18 2.7E-23 191.5 19.6 197 101-318 2-246 (441)
64 PRK14556 pyrH uridylate kinase 99.8 4.2E-17 9E-22 164.2 21.7 218 100-445 16-248 (249)
65 cd04244 AAK_AK-LysC-like AAK_A 99.7 5.4E-16 1.2E-20 161.7 17.7 200 101-318 1-262 (298)
66 PRK06291 aspartate kinase; Pro 99.6 3.7E-15 7.9E-20 164.9 18.9 196 101-316 2-264 (465)
67 PRK08373 aspartate kinase; Val 99.6 1.9E-14 4.1E-19 152.0 23.3 195 98-316 2-242 (341)
68 COG0528 PyrH Uridylate kinase 99.6 5E-14 1.1E-18 138.5 22.5 217 98-444 4-237 (238)
69 PRK07757 acetyltransferase; Pr 99.6 2.6E-14 5.6E-19 133.8 15.9 129 449-579 2-130 (152)
70 PRK10146 aminoalkylphosphonic 99.6 1.7E-14 3.7E-19 133.3 11.9 123 449-571 4-138 (144)
71 COG0527 LysC Aspartokinases [A 99.6 1.9E-13 4.2E-18 149.2 21.8 199 101-320 3-254 (447)
72 PRK07922 N-acetylglutamate syn 99.5 1.3E-13 2.8E-18 132.4 14.6 124 448-573 5-129 (169)
73 cd04259 AAK_AK-DapDC AAK_AK-Da 99.5 7.3E-13 1.6E-17 137.9 20.1 201 102-318 2-259 (295)
74 TIGR02078 AspKin_pair Pyrococc 99.5 3.4E-13 7.3E-18 141.8 17.6 78 238-315 144-231 (327)
75 PTZ00330 acetyltransferase; Pr 99.5 3.9E-13 8.5E-18 124.6 14.6 124 449-572 7-142 (147)
76 cd04257 AAK_AK-HSDH AAK_AK-HSD 99.5 1.2E-12 2.6E-17 136.2 18.7 193 102-317 2-257 (294)
77 PRK12308 bifunctional arginino 99.5 3.6E-13 7.9E-18 153.9 15.8 134 449-584 464-597 (614)
78 PRK03624 putative acetyltransf 99.4 1.7E-12 3.8E-17 118.2 14.1 120 449-573 3-132 (140)
79 cd04243 AAK_AK-HSDH-like AAK_A 99.4 4.1E-12 9E-17 132.2 18.5 78 241-318 168-257 (293)
80 TIGR03827 GNAT_ablB putative b 99.4 2.1E-12 4.6E-17 132.9 15.7 123 449-572 116-246 (266)
81 PF13527 Acetyltransf_9: Acety 99.4 9.2E-13 2E-17 119.2 11.1 119 450-569 1-127 (127)
82 KOG3216 Diamine acetyltransfer 99.4 4.4E-12 9.5E-17 116.1 13.8 125 447-571 2-146 (163)
83 PHA00673 acetyltransferase dom 99.4 4.5E-12 9.7E-17 118.8 13.6 121 452-572 10-147 (154)
84 cd04245 AAK_AKiii-YclM-BS AAK_ 99.4 5.6E-11 1.2E-15 123.2 23.0 112 194-318 130-252 (288)
85 PF13673 Acetyltransf_10: Acet 99.4 8.9E-12 1.9E-16 110.7 14.3 103 458-566 1-117 (117)
86 PRK10140 putative acetyltransf 99.4 1.2E-11 2.5E-16 116.3 15.7 123 449-572 4-142 (162)
87 TIGR02382 wecD_rffC TDP-D-fuco 99.4 6.4E-12 1.4E-16 122.8 14.4 126 446-572 41-186 (191)
88 PLN02706 glucosamine 6-phospha 99.4 5.7E-12 1.2E-16 117.6 12.8 121 449-572 7-145 (150)
89 PF00583 Acetyltransf_1: Acety 99.4 7.7E-12 1.7E-16 104.2 11.7 75 493-567 1-83 (83)
90 PF13523 Acetyltransf_8: Acety 99.4 7.6E-12 1.6E-16 117.1 12.8 126 451-576 1-146 (152)
91 PRK09491 rimI ribosomal-protei 99.4 1.8E-11 3.8E-16 113.9 15.2 118 449-572 2-126 (146)
92 PRK09831 putative acyltransfer 99.4 1.1E-11 2.3E-16 115.8 13.6 113 450-573 2-128 (147)
93 PRK10975 TDP-fucosamine acetyl 99.3 2E-11 4.3E-16 119.6 15.4 124 448-572 46-189 (194)
94 PRK09084 aspartate kinase III; 99.3 2.3E-11 5.1E-16 134.0 17.0 192 101-318 1-252 (448)
95 PRK05925 aspartate kinase; Pro 99.3 3.5E-11 7.7E-16 131.8 17.8 73 246-318 160-243 (440)
96 TIGR02406 ectoine_EctA L-2,4-d 99.3 1.9E-11 4.1E-16 115.9 13.8 119 451-569 1-126 (157)
97 PRK08961 bifunctional aspartat 99.3 2.9E-11 6.3E-16 143.3 17.7 79 240-318 178-268 (861)
98 PF13420 Acetyltransf_4: Acety 99.3 6.8E-11 1.5E-15 110.6 16.1 121 451-572 1-140 (155)
99 COG1247 Sortase and related ac 99.3 4.6E-11 1E-15 113.6 14.7 144 450-598 3-166 (169)
100 TIGR01575 rimI ribosomal-prote 99.3 7.4E-11 1.6E-15 106.3 14.2 109 458-572 1-117 (131)
101 cd04258 AAK_AKiii-LysC-EC AAK_ 99.3 3.1E-10 6.8E-15 117.9 20.5 71 249-319 176-257 (292)
102 PF13508 Acetyltransf_7: Acety 99.3 6.5E-11 1.4E-15 98.6 12.4 75 489-568 4-79 (79)
103 PRK10314 putative acyltransfer 99.3 2.9E-11 6.4E-16 114.2 11.2 122 451-572 9-135 (153)
104 KOG3139 N-acetyltransferase [G 99.3 5.6E-11 1.2E-15 110.2 12.4 99 489-594 56-162 (165)
105 PRK09034 aspartate kinase; Rev 99.2 6.7E-10 1.4E-14 122.8 21.8 123 176-319 120-253 (454)
106 PRK09436 thrA bifunctional asp 99.2 2.2E-10 4.9E-15 134.6 18.9 76 242-317 172-259 (819)
107 cd04247 AAK_AK-Hom3 AAK_AK-Hom 99.2 7.7E-10 1.7E-14 115.6 20.0 70 250-319 189-269 (306)
108 PRK10514 putative acetyltransf 99.2 1.9E-10 4E-15 106.5 12.7 114 449-573 2-128 (145)
109 TIGR01686 FkbH FkbH-like domai 99.2 2.9E-10 6.4E-15 120.2 14.4 122 446-569 184-319 (320)
110 KOG3396 Glucosamine-phosphate 99.2 1.7E-10 3.7E-15 103.6 10.2 120 449-571 7-144 (150)
111 TIGR03103 trio_acet_GNAT GNAT- 99.2 2.4E-10 5.2E-15 128.9 13.9 121 449-573 83-219 (547)
112 COG0456 RimI Acetyltransferase 99.2 4.1E-10 9E-15 107.5 13.6 125 446-572 9-155 (177)
113 TIGR03585 PseH pseudaminic aci 99.2 6.2E-10 1.3E-14 104.1 14.0 121 450-572 2-139 (156)
114 COG3153 Predicted acetyltransf 99.1 8.4E-10 1.8E-14 105.2 14.6 143 447-597 2-152 (171)
115 PLN02551 aspartokinase 99.1 2.3E-09 5E-14 119.7 20.1 197 100-319 52-312 (521)
116 COG2054 Uncharacterized archae 99.1 2.6E-09 5.6E-14 100.7 15.2 113 249-445 91-210 (212)
117 PRK10151 ribosomal-protein-L7/ 99.1 2.5E-09 5.3E-14 103.0 15.7 124 448-572 10-156 (179)
118 PRK10562 putative acetyltransf 99.1 1.6E-09 3.6E-14 100.6 13.8 113 450-572 1-126 (145)
119 PRK15130 spermidine N1-acetylt 99.1 1.6E-09 3.4E-14 105.0 13.5 123 449-572 7-146 (186)
120 PRK01346 hypothetical protein; 99.0 1.4E-09 3E-14 118.8 13.3 119 447-570 5-135 (411)
121 PHA01807 hypothetical protein 99.0 4.4E-09 9.6E-14 99.3 14.1 111 454-564 9-136 (153)
122 TIGR03448 mycothiol_MshD mycot 99.0 5.7E-09 1.2E-13 108.4 15.9 123 449-571 150-288 (292)
123 PRK09466 metL bifunctional asp 99.0 6E-09 1.3E-13 122.0 17.6 112 194-320 140-265 (810)
124 cd02169 Citrate_lyase_ligase C 99.0 1.3E-09 2.9E-14 113.5 10.7 76 489-570 7-83 (297)
125 TIGR03448 mycothiol_MshD mycot 99.0 4.1E-09 8.9E-14 109.5 13.9 114 452-571 4-128 (292)
126 PRK13688 hypothetical protein; 99.0 2.4E-09 5.1E-14 101.6 10.7 107 449-572 18-134 (156)
127 PF13302 Acetyltransf_3: Acety 99.0 9.2E-09 2E-13 94.2 14.0 118 449-567 2-142 (142)
128 TIGR00124 cit_ly_ligase [citra 99.0 1.1E-08 2.4E-13 108.3 15.1 81 486-572 29-110 (332)
129 PRK10809 ribosomal-protein-S5- 98.9 1.6E-08 3.4E-13 98.8 14.1 123 449-572 18-167 (194)
130 COG2153 ElaA Predicted acyltra 98.7 6.5E-08 1.4E-12 88.3 8.3 93 481-573 43-138 (155)
131 KOG3397 Acetyltransferases [Ge 98.6 1.6E-07 3.5E-12 87.8 9.0 79 494-572 63-142 (225)
132 KOG3235 Subunit of the major N 98.5 1.1E-07 2.5E-12 87.7 5.2 140 450-596 3-153 (193)
133 KOG3234 Acetyltransferase, (GN 98.5 3.8E-07 8.2E-12 84.3 8.4 123 450-572 3-132 (173)
134 KOG3138 Predicted N-acetyltran 98.5 2.7E-07 5.9E-12 89.1 6.4 147 449-602 17-178 (187)
135 PF08445 FR47: FR47-like prote 98.4 1.6E-06 3.4E-11 73.9 10.2 58 514-572 22-83 (86)
136 KOG2488 Acetyltransferase (GNA 98.4 1.1E-06 2.5E-11 83.8 9.6 116 457-572 54-183 (202)
137 cd04301 NAT_SF N-Acyltransfera 98.4 1.7E-06 3.7E-11 66.3 8.6 62 491-552 2-64 (65)
138 COG3393 Predicted acetyltransf 98.3 3.3E-06 7.2E-11 84.9 10.0 83 489-572 178-263 (268)
139 TIGR01211 ELP3 histone acetylt 98.3 3.9E-06 8.4E-11 93.9 11.4 84 489-572 412-517 (522)
140 COG1670 RimL Acetyltransferase 98.2 1.6E-05 3.6E-10 75.4 12.5 76 497-573 77-160 (187)
141 PF14542 Acetyltransf_CG: GCN5 98.2 1.6E-05 3.5E-10 66.5 10.3 70 492-564 3-72 (78)
142 COG3981 Predicted acetyltransf 98.2 1.8E-05 3.9E-10 74.8 11.2 86 489-575 70-163 (174)
143 cd04248 AAK_AK-Ectoine AAK_AK- 98.1 8.7E-05 1.9E-09 77.2 16.4 78 242-319 177-269 (304)
144 PF13718 GNAT_acetyltr_2: GNAT 98.1 4.4E-05 9.6E-10 74.7 12.7 103 488-595 27-195 (196)
145 PRK09181 aspartate kinase; Val 98.1 0.00012 2.7E-09 81.3 17.2 79 241-320 182-276 (475)
146 COG3053 CitC Citrate lyase syn 98.0 5.8E-05 1.3E-09 76.6 11.7 109 450-571 5-115 (352)
147 PF04768 DUF619: Protein of un 97.7 9.7E-05 2.1E-09 71.0 7.9 132 429-568 2-143 (170)
148 COG3818 Predicted acetyltransf 97.7 0.00015 3.2E-09 65.3 7.7 129 446-576 5-153 (167)
149 PF12746 GNAT_acetyltran: GNAT 97.5 0.0017 3.6E-08 66.8 13.9 92 478-572 156-248 (265)
150 PF12568 DUF3749: Acetyltransf 97.5 0.00095 2.1E-08 60.5 10.4 104 453-569 9-123 (128)
151 COG2388 Predicted acetyltransf 97.4 0.00039 8.4E-09 60.6 6.7 62 488-550 15-76 (99)
152 COG1444 Predicted P-loop ATPas 97.4 0.0016 3.5E-08 75.1 13.5 79 513-597 531-612 (758)
153 KOG4144 Arylalkylamine N-acety 97.1 0.00031 6.8E-09 65.0 3.2 78 496-573 70-163 (190)
154 COG4552 Eis Predicted acetyltr 97.1 0.00085 1.8E-08 70.1 5.8 83 488-571 39-127 (389)
155 KOG0456 Aspartate kinase [Amin 97.0 0.0074 1.6E-07 63.8 12.4 70 250-319 258-339 (559)
156 PF00765 Autoind_synth: Autoin 97.0 0.0069 1.5E-07 59.0 11.1 115 456-570 7-154 (182)
157 COG0454 WecD Histone acetyltra 96.9 0.0016 3.4E-08 54.3 5.0 44 519-566 87-130 (156)
158 PF04958 AstA: Arginine N-succ 96.8 0.011 2.4E-07 62.7 11.9 145 450-598 3-211 (342)
159 TIGR03694 exosort_acyl putativ 96.8 0.0098 2.1E-07 60.6 11.0 120 450-569 9-196 (241)
160 PF08444 Gly_acyl_tr_C: Aralky 96.5 0.0089 1.9E-07 51.0 6.6 71 494-570 5-79 (89)
161 PRK13834 putative autoinducer 96.4 0.037 8.1E-07 55.0 11.8 112 458-569 17-163 (207)
162 PF13480 Acetyltransf_6: Acety 96.2 0.069 1.5E-06 48.3 11.6 64 489-554 72-135 (142)
163 TIGR03245 arg_AOST_alph argini 96.1 0.027 5.9E-07 59.4 9.1 145 451-599 2-209 (336)
164 TIGR03243 arg_catab_AOST argin 96.0 0.032 7E-07 58.8 9.2 145 451-599 2-208 (335)
165 COG5630 ARG2 Acetylglutamate s 95.9 0.029 6.2E-07 59.1 8.2 107 458-568 346-457 (495)
166 PRK10456 arginine succinyltran 95.7 0.036 7.8E-07 58.7 8.4 146 449-598 2-209 (344)
167 KOG4135 Predicted phosphogluco 95.7 0.12 2.7E-06 47.9 10.6 122 451-572 16-171 (185)
168 TIGR03244 arg_catab_AstA argin 95.7 0.045 9.7E-07 57.9 8.9 144 451-598 2-207 (336)
169 COG3916 LasI N-acyl-L-homoseri 95.6 0.14 3.1E-06 50.3 11.5 115 456-570 14-162 (209)
170 COG3882 FkbH Predicted enzyme 95.3 0.035 7.6E-07 60.6 6.4 125 446-572 411-551 (574)
171 COG5628 Predicted acetyltransf 95.1 0.098 2.1E-06 46.8 7.5 78 488-567 37-119 (143)
172 PF06852 DUF1248: Protein of u 95.0 0.17 3.7E-06 49.1 9.8 80 491-571 49-137 (181)
173 COG1243 ELP3 Histone acetyltra 94.0 0.067 1.4E-06 58.2 4.8 51 522-572 459-510 (515)
174 KOG2036 Predicted P-loop ATPas 93.1 0.3 6.4E-06 55.6 8.0 84 514-602 615-751 (1011)
175 PF01233 NMT: Myristoyl-CoA:pr 93.0 0.49 1.1E-05 44.8 8.2 94 457-550 35-147 (162)
176 PF01853 MOZ_SAS: MOZ/SAS fami 92.8 0.32 6.8E-06 47.4 6.9 48 498-546 66-113 (188)
177 cd04264 DUF619-NAGS DUF619 dom 92.2 0.48 1E-05 41.5 6.6 67 490-561 10-80 (99)
178 KOG2535 RNA polymerase II elon 92.1 0.18 4E-06 52.7 4.5 49 524-572 498-548 (554)
179 COG3138 AstA Arginine/ornithin 91.4 0.48 1E-05 48.6 6.5 86 450-535 3-141 (336)
180 PF02799 NMT_C: Myristoyl-CoA: 91.1 1.3 2.9E-05 43.2 9.1 117 450-571 30-165 (190)
181 cd04265 DUF619-NAGS-U DUF619 d 90.6 0.74 1.6E-05 40.3 6.2 66 491-561 12-80 (99)
182 PLN03238 probable histone acet 90.5 0.58 1.3E-05 48.3 6.2 49 497-546 140-188 (290)
183 PF13880 Acetyltransf_13: ESCO 89.8 0.33 7.2E-06 39.6 3.1 29 514-542 6-34 (70)
184 PTZ00064 histone acetyltransfe 88.0 0.89 1.9E-05 50.2 5.8 49 497-546 369-417 (552)
185 PLN03239 histone acetyltransfe 86.9 1.3 2.9E-05 47.0 6.1 49 497-546 198-246 (351)
186 COG3375 Uncharacterized conser 86.8 4.5 9.8E-05 40.4 9.3 103 456-558 11-119 (266)
187 KOG2779 N-myristoyl transferas 86.7 5.1 0.00011 42.5 10.1 116 449-569 261-395 (421)
188 PF04377 ATE_C: Arginine-tRNA- 86.4 11 0.00023 34.7 11.1 60 491-552 42-101 (128)
189 COG2401 ABC-type ATPase fused 86.2 0.55 1.2E-05 51.0 2.9 58 512-569 240-306 (593)
190 PRK01305 arginyl-tRNA-protein 85.8 9.2 0.0002 38.9 11.4 80 473-554 123-208 (240)
191 PLN00104 MYST -like histone ac 85.7 0.93 2E-05 49.8 4.4 49 497-546 291-339 (450)
192 TIGR03019 pepcterm_femAB FemAB 84.8 6.8 0.00015 41.5 10.5 81 490-572 197-282 (330)
193 TIGR03827 GNAT_ablB putative b 81.7 8.2 0.00018 39.6 9.3 63 528-598 20-83 (266)
194 PF05301 Mec-17: Touch recepto 81.6 5.2 0.00011 36.1 6.7 48 515-563 48-97 (120)
195 PRK14852 hypothetical protein; 80.9 8.2 0.00018 46.7 10.0 121 451-571 31-181 (989)
196 PF13444 Acetyltransf_5: Acety 80.6 1.8 3.9E-05 37.7 3.5 48 488-535 31-100 (101)
197 PHA01733 hypothetical protein 80.6 5.4 0.00012 37.6 6.7 117 450-571 4-132 (153)
198 KOG2747 Histone acetyltransfer 76.9 2.9 6.2E-05 45.2 4.2 35 512-546 259-293 (396)
199 KOG2779 N-myristoyl transferas 72.9 8.1 0.00018 41.1 6.1 55 495-549 143-203 (421)
200 PF09924 DUF2156: Uncharacteri 69.4 31 0.00067 35.9 9.9 66 488-554 180-246 (299)
201 PHA00432 internal virion prote 66.9 27 0.00058 32.4 7.5 110 451-571 3-121 (137)
202 KOG4601 Uncharacterized conser 59.9 12 0.00026 37.6 4.1 51 512-563 107-159 (264)
203 PF11124 Pho86: Inorganic phos 57.1 69 0.0015 33.7 9.3 90 486-575 167-276 (304)
204 PF12261 T_hemolysin: Thermost 55.5 60 0.0013 31.6 8.2 106 457-571 8-142 (179)
205 KOG3698 Hyaluronoglucosaminida 55.2 41 0.00088 38.1 7.6 126 447-572 678-879 (891)
206 cd04266 DUF619-NAGS-FABP DUF61 54.1 45 0.00097 29.7 6.4 64 493-561 14-87 (108)
207 PHA03398 viral phosphatase sup 53.1 45 0.00097 35.1 7.3 57 100-156 129-191 (303)
208 COG5027 SAS2 Histone acetyltra 49.4 7.4 0.00016 41.2 0.9 100 438-543 186-292 (395)
209 PF04339 DUF482: Protein of un 48.6 1.7E+02 0.0038 31.8 11.2 111 455-570 211-328 (370)
210 PF10686 DUF2493: Protein of u 48.5 46 0.001 27.2 5.3 38 101-140 4-41 (71)
211 PTZ00063 histone deacetylase; 47.0 68 0.0015 35.6 7.9 65 79-143 230-302 (436)
212 TIGR01684 viral_ppase viral ph 46.5 67 0.0015 33.8 7.3 58 99-156 126-189 (301)
213 COG2898 Uncharacterized conser 43.2 64 0.0014 36.7 7.1 65 489-554 394-458 (538)
214 KOG2696 Histone acetyltransfer 43.1 30 0.00065 37.2 4.2 45 499-543 200-247 (403)
215 PF02474 NodA: Nodulation prot 42.6 51 0.0011 31.8 5.2 52 513-565 85-137 (196)
216 COG2935 Putative arginyl-tRNA: 42.5 2.3E+02 0.0049 29.1 10.1 103 450-554 99-215 (253)
217 TIGR00521 coaBC_dfp phosphopan 40.8 87 0.0019 34.3 7.5 70 71-140 157-235 (390)
218 PF07395 Mig-14: Mig-14; Inte 39.2 1.1E+02 0.0025 31.5 7.6 101 452-552 130-243 (264)
219 COG5092 NMT1 N-myristoyl trans 39.1 87 0.0019 33.0 6.7 53 497-549 143-201 (451)
220 PF00850 Hist_deacetyl: Histon 39.0 98 0.0021 32.7 7.5 65 79-143 220-296 (311)
221 PTZ00346 histone deacetylase; 35.3 1.4E+02 0.003 33.2 7.9 63 79-141 248-318 (429)
222 TIGR01668 YqeG_hyp_ppase HAD s 34.0 1.8E+02 0.0038 27.6 7.7 47 94-140 20-69 (170)
223 PRK02983 lysS lysyl-tRNA synth 31.4 1.3E+02 0.0028 37.5 7.8 59 494-554 427-485 (1094)
224 PF04339 DUF482: Protein of un 29.9 2.1E+02 0.0046 31.2 8.2 82 488-569 44-158 (370)
225 PRK12702 mannosyl-3-phosphogly 29.7 1.8E+02 0.0039 30.7 7.4 53 100-152 2-57 (302)
226 cd03173 DUF619-like DUF619 dom 29.4 2.3E+02 0.0049 24.8 6.8 62 494-561 15-79 (98)
227 TIGR02463 MPGP_rel mannosyl-3- 29.2 1.6E+02 0.0036 28.7 6.9 52 102-153 2-56 (221)
228 cd07041 STAS_RsbR_RsbS_like Su 28.9 3.2E+02 0.0068 23.4 7.9 62 92-154 34-96 (109)
229 PF08901 DUF1847: Protein of u 28.9 1.2E+02 0.0025 28.9 5.3 37 535-571 43-87 (157)
230 PTZ00174 phosphomannomutase; P 28.6 94 0.002 31.4 5.1 40 100-139 6-47 (247)
231 KOG3014 Protein involved in es 28.6 2.4E+02 0.0052 28.9 7.7 57 487-543 130-213 (257)
232 COG0561 Cof Predicted hydrolas 28.3 1.5E+02 0.0033 29.9 6.6 55 100-154 4-61 (264)
233 KOG1342 Histone deacetylase co 28.3 1.9E+02 0.0041 31.5 7.3 69 80-148 233-309 (425)
234 COG2875 CobM Precorrin-4 methy 28.2 2.7E+02 0.0059 28.4 7.9 44 116-159 61-111 (254)
235 PRK00192 mannosyl-3-phosphogly 28.1 1.6E+02 0.0035 30.0 6.9 55 99-153 4-61 (273)
236 PRK01158 phosphoglycolate phos 28.0 1.8E+02 0.0039 28.5 7.0 54 100-153 4-60 (230)
237 PRK05579 bifunctional phosphop 26.9 2.1E+02 0.0045 31.5 7.7 71 69-140 159-238 (399)
238 PLN02645 phosphoglycolate phos 26.7 1.5E+02 0.0032 31.2 6.3 54 100-153 29-87 (311)
239 PRK10530 pyridoxal phosphate ( 26.5 1.9E+02 0.004 29.1 6.9 54 100-153 4-60 (272)
240 PRK15312 antimicrobial resista 26.2 2.8E+02 0.006 29.2 7.9 93 459-551 165-272 (298)
241 TIGR01662 HAD-SF-IIIA HAD-supe 26.0 2E+02 0.0042 25.6 6.2 53 101-153 2-73 (132)
242 PHA02769 hypothetical protein; 25.8 51 0.0011 29.5 2.1 44 530-573 93-141 (154)
243 PRK15126 thiamin pyrimidine py 24.6 1.2E+02 0.0026 30.8 5.1 54 100-153 3-59 (272)
244 COG0560 SerB Phosphoserine pho 24.4 1.1E+02 0.0025 30.3 4.7 36 119-154 82-118 (212)
245 PRK10976 putative hydrolase; P 24.2 1.2E+02 0.0027 30.5 5.1 54 100-153 3-59 (266)
246 PRK10513 sugar phosphate phosp 24.1 1.2E+02 0.0026 30.6 5.0 54 100-153 4-60 (270)
247 TIGR01457 HAD-SF-IIA-hyp2 HAD- 23.8 1.9E+02 0.0041 29.3 6.3 54 100-153 2-60 (249)
248 TIGR02990 ectoine_eutA ectoine 23.6 1.7E+02 0.0036 29.8 5.8 43 531-573 104-153 (239)
249 COG5092 NMT1 N-myristoyl trans 23.4 3.3E+02 0.0072 28.9 7.7 122 448-569 258-412 (451)
250 PRK13982 bifunctional SbtC-lik 23.2 2.9E+02 0.0063 31.2 8.0 70 70-139 225-305 (475)
251 PRK03669 mannosyl-3-phosphogly 23.2 2.3E+02 0.0049 28.9 6.8 53 100-152 8-63 (271)
252 TIGR01656 Histidinol-ppas hist 23.1 2.4E+02 0.0053 25.8 6.4 24 116-139 29-52 (147)
253 PF09390 DUF1999: Protein of u 21.8 6.8E+02 0.015 23.6 12.4 120 450-570 2-140 (161)
254 TIGR01487 SPP-like sucrose-pho 21.7 1.7E+02 0.0036 28.6 5.3 41 100-140 2-44 (215)
255 TIGR01689 EcbF-BcbF capsule bi 20.9 2E+02 0.0044 26.2 5.2 40 100-139 2-49 (126)
256 KOG2960 Protein involved in th 20.9 41 0.0009 33.7 0.7 27 1-27 1-27 (328)
257 COG2247 LytB Putative cell wal 20.6 7.5E+02 0.016 26.5 9.8 40 117-159 65-108 (337)
258 KOG1615 Phosphoserine phosphat 20.3 1.6E+02 0.0035 29.2 4.6 36 116-154 93-129 (227)
259 TIGR02461 osmo_MPG_phos mannos 20.2 3.1E+02 0.0068 27.3 7.0 52 102-153 2-55 (225)
260 TIGR01458 HAD-SF-IIA-hyp3 HAD- 20.2 1.8E+02 0.004 29.5 5.4 54 100-153 2-64 (257)
261 PRK14368 Maf-like protein; Pro 20.1 3.9E+02 0.0084 26.3 7.3 89 44-132 8-104 (193)
No 1
>PLN02825 amino-acid N-acetyltransferase
Probab=100.00 E-value=3.9e-98 Score=818.78 Aligned_cols=508 Identities=79% Similarity=1.238 Sum_probs=472.1
Q ss_pred HHHHHHHhhhhHHhhcCCeEEEEeCCcccCCCChHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccC
Q 007275 83 FVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRI 162 (609)
Q Consensus 83 ~~~~~r~a~pyi~~~~~k~iVIKlGGsvl~~~~l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rv 162 (609)
||+|||+++|||++||||+||||+||+++.++.+.++++||+.|+..|+++||||||||||+..++++|++++|++|+|+
T Consensus 1 ~v~~fr~a~pYI~~~rgktfVIk~gG~~l~~~~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RV 80 (515)
T PLN02825 1 FVRWFREAWPYIQGHRGSTFVVVISGEVVAGPHLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRI 80 (515)
T ss_pred ChhHHHhhhHHHHHHCCCEEEEEECchhhcCchHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCccc
Confidence 79999999999999999999999999999887899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHH
Q 007275 163 TDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 242 (609)
Q Consensus 163 t~~~~l~~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~ 242 (609)
||+++|+++++++|.+|..|++.||+|++|+.|+++|.++|++.+++++.||||++++|.|+++++|+||+|+|++||.+
T Consensus 81 Td~~~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~ 160 (515)
T PLN02825 81 TDSAALQASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVS 160 (515)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHH
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccCCCCccccccCHHHHHHHHHhhchh
Q 007275 243 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQ 322 (609)
Q Consensus 243 ~I~~LL~~G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~~~~~lI~~it~~e~~~l~~~~~~~ 322 (609)
.|+.+|+.|.|||++|++++++|+++|+|+|++|+++|.+|+|||||||||+++++.++++|++++.+|++.+++++.+|
T Consensus 161 ~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~~~~~~g~li~~l~~~e~~~li~~~~~~ 240 (515)
T PLN02825 161 RIKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIVDGPILDENGRLIRFMTLEEADMLIRKRAKQ 240 (515)
T ss_pred HHHHHHhCCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcceecCCCCCcCcCCHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999888889
Q ss_pred hhhHhhhhhhhhcccccccCCCCCCcccccCCCCCccc-------ccccccccCCcccCCCCCCccccccccccccchhh
Q 007275 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFS-------ERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLS 395 (609)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~ 395 (609)
|+|||+++|||.+++.+....-.. .+..+.++. ......|.++++|.+|.| .+.+|||++|++|++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 314 (515)
T PLN02825 241 SEIAANYVKAVGGEDYSYSLGLDS-----VNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNG-LSGEQGFAIGGEERLS 314 (515)
T ss_pred chhhhhhhhhcccccccccccccc-----ccccccccccccccccccccccccccccccCccc-ccccccccccchhhch
Confidence 999999999999997653211000 000011111 112234667777777655 3678999999999999
Q ss_pred cccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccccccccccccCCcCCHHHHHHHHhhhHhhccC
Q 007275 396 RLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGAL 475 (609)
Q Consensus 396 ~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~d~~~~IR~a~~~D~~~I~~L~~~~~~~~~~ 475 (609)
+...+++||.+|.+||++||+|+||+|++.+|+||+||||+||+||+|..|+|+.||+++.+|++.|.++++++...++.
T Consensus 315 ~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~~~~e~IR~At~eDi~~I~~Li~~lee~g~l 394 (515)
T PLN02825 315 RLNGYLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIASDMYEGTRMARVEDLAGIRQIIRPLEESGIL 394 (515)
T ss_pred hhhhHHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCceeEeccChHhhheeCCHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ccCCHHHHHhhcCeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeH
Q 007275 476 VRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT 555 (609)
Q Consensus 476 ~~~~~e~l~~~i~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~ 555 (609)
..++.+.+..++..|+|+++|++++||+.++++.+...++|.+++|+|+|||+|+|++||++++++|+++|++++++.|+
T Consensus 395 v~rs~e~le~ei~~f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Lltt 474 (515)
T PLN02825 395 VRRTDEELLRALDSFVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLTT 474 (515)
T ss_pred cCCCHHHHHhcCCcEEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 88999999999989999999999999999998877788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCeEeeeecchhHhhhhcccCCCceeEEeecC
Q 007275 556 RTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLL 596 (609)
Q Consensus 556 ~a~~fYek~GF~~~~~~~lp~~~~~~y~~~~~s~i~mkkll 596 (609)
++.+||+++||+.++.+.+|..++..|+++|+|++|||+|+
T Consensus 475 ~a~~fY~k~GF~~~~~~~lp~~~~~~yn~~r~sk~~~k~l~ 515 (515)
T PLN02825 475 RTADWFVRRGFSECSIESLPEARRKRINLSRGSKYYMKKLL 515 (515)
T ss_pred cHHHHHHHCCCEEeChhhCCHHHHhhcCccCCcEEEEEecC
Confidence 99999999999999999999999999999999999999984
No 2
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=100.00 E-value=1.5e-75 Score=639.07 Aligned_cols=428 Identities=45% Similarity=0.751 Sum_probs=394.1
Q ss_pred HHHHHHHhhhhHHhhcCCeEEEEeCCcccCCCChHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccC
Q 007275 83 FVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRI 162 (609)
Q Consensus 83 ~~~~~r~a~pyi~~~~~k~iVIKlGGsvl~~~~l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rv 162 (609)
|+++||||+|||++|||+++|||+||++++++++..++++|+.|+..|.++||||||||+|++.++++|++++|++|+|+
T Consensus 1 ~~~~~~~~~~~i~~~~~~~~ViK~GG~~~~~~~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~Rv 80 (429)
T TIGR01890 1 FVAWFREAAPYINAHRGKTFVVGLGGELVEGGNLGNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRV 80 (429)
T ss_pred ChhHHhhhhHHHHHhCCCEEEEEEChhhccCccHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCccc
Confidence 78999999999999999999999999999887789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHH
Q 007275 163 TDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 242 (609)
Q Consensus 163 t~~~~l~~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~ 242 (609)
|++++|+++.+++|.+|..|++.|+ +++-..+++.+++++.|++++.+++.++.+++|+||+|+|+.+|.+
T Consensus 81 T~~~~l~~~~~~~g~vn~~l~~~l~---------~~~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~ 151 (429)
T TIGR01890 81 TDEASLEQAQQAAGTLRLAIEARLS---------MSLSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTE 151 (429)
T ss_pred CCHHHHHHHHHHhChHHHHHHHHHH---------hcCCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcHH
Confidence 9999999996569999999999864 3321112334578999999999999887788999999999999999
Q ss_pred HHHHHHhCCCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-CCCccccccCHHHHHHHHHhhch
Q 007275 243 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQRVK 321 (609)
Q Consensus 243 ~I~~LL~~G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-~~~~lI~~it~~e~~~l~~~~~~ 321 (609)
.|+.+|+.|+|||++|++++.+|+.+|+|+|.+|++||.+|+|++|||+|||+|+. +++++|++|+.+|+++++....
T Consensus 152 ~l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~~g~~i~~i~~~~~~~l~~~~~- 230 (429)
T TIGR01890 152 GIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDPDGTLAAELSPQEVESLAERLG- 230 (429)
T ss_pred HHHHHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCcccCCHHHHHHHHHhcc-
Confidence 99999999999999999999999999999999999999999999999999999985 4699999999999998875411
Q ss_pred hhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCH
Q 007275 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (609)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~ 401 (609)
| || |.
T Consensus 231 ------------------------------------------------------~-~~--------------------~~ 235 (429)
T TIGR01890 231 ------------------------------------------------------S-ET--------------------TR 235 (429)
T ss_pred ------------------------------------------------------C-CC--------------------cH
Confidence 1 31 58
Q ss_pred HHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccccccccccccCCcCCHHHHHHHHhhhHhhccCccCCHH
Q 007275 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDE 481 (609)
Q Consensus 402 ~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~d~~~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e 481 (609)
+||++|..|++.||++|||+||+.+++|+.|||+++|.||+|..++|..||+++.+|++.|.+++++....++..++..+
T Consensus 236 ~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~y~~IR~at~~Dl~~I~~L~~~~~~~~~~~~~~~~ 315 (429)
T TIGR01890 236 RLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEAFESIRQATIDDIGGIAALIRPLEEQGILVRRSRE 315 (429)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccchhheEECCHHHHHHHHHHHHHHHHcCCchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777777778888
Q ss_pred HHHhhcCeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeHHHHHHH
Q 007275 482 ELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWF 561 (609)
Q Consensus 482 ~l~~~i~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~~a~~fY 561 (609)
.+..++..+++++.|++++||+.+.++.+...++|..++|+|+|||+|+|++||++++++|+++|++.+++.++.+.+||
T Consensus 316 ~l~~~~~~~~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~~a~~fY 395 (429)
T TIGR01890 316 YLEREISEFSIIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTTRTGHWF 395 (429)
T ss_pred HHHhhcCcEEEEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeecchHHHH
Confidence 88888888899999999999999987666678999999999999999999999999999999999999988887889999
Q ss_pred HHCCCeEeeeecchhHhhhhcccCCCceeEEeec
Q 007275 562 KSRGFRECSIEMIPEERRKRINLSRNSKYYMKKL 595 (609)
Q Consensus 562 ek~GF~~~~~~~lp~~~~~~y~~~~~s~i~mkkl 595 (609)
+++||+.++..++|..++..|+++|++++|||+|
T Consensus 396 ~k~GF~~~g~~~l~~~~~~~~~~~r~~~~~~~~~ 429 (429)
T TIGR01890 396 RERGFQTASVDELPEARRKLYNYQRNSKILMKRL 429 (429)
T ss_pred HHCCCEECChhhCCHHHHHHhcccccCceeeecC
Confidence 9999999999999999999999999999999986
No 3
>PRK05279 N-acetylglutamate synthase; Validated
Probab=100.00 E-value=1.1e-72 Score=618.97 Aligned_cols=434 Identities=46% Similarity=0.757 Sum_probs=394.0
Q ss_pred hhHHHHHHHHhhhhHHhhcCCeEEEEeCCcccCCCChHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCC
Q 007275 80 DEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGR 159 (609)
Q Consensus 80 ~~~~~~~~r~a~pyi~~~~~k~iVIKlGGsvl~~~~l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g 159 (609)
...|+++||+++|||++||++++|||+||++|+++++++++++|+.|+..|+++||||||||+|+..+.++|+++++++|
T Consensus 6 ~~~~~~~~~~~~~~i~~~~~~~~VIk~GG~~l~~~~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G 85 (441)
T PRK05279 6 STEFVDWFRHSAPYINAHRGKTFVIMLGGEAIAHGNFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKG 85 (441)
T ss_pred hhHHHHHHHHHhHHHHHhCCCEEEEEECchhccChhHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCC
Confidence 45699999999999999999999999999999887888999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCC-cceeEEEeecCCceeeeeecCcccCcCCcceeeEee
Q 007275 160 YRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSS-RWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKK 238 (609)
Q Consensus 160 ~rvt~~~~l~~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~-~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~ 238 (609)
+|+|++++|+.+.++.+.+|..+++.|+. |++. +++...+++.+++++.++++++.++.|+||+|+++.
T Consensus 86 ~RvT~~~~l~~~~~~~g~v~~~l~~~l~~----------g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~ 155 (441)
T PRK05279 86 LRVTDAAALECVKQAAGELRLDIEARLSM----------GLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRR 155 (441)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHhc----------cCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEE
Confidence 99999999999955579999999998643 4331 122445788899999999998878889999999999
Q ss_pred eCHHHHHHHHhCCCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-CCCccccccCHHHHHHHHH
Q 007275 239 VDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIR 317 (609)
Q Consensus 239 v~~~~I~~LL~~G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-~~~~lI~~it~~e~~~l~~ 317 (609)
+|.+.|+.||++|+|||++|++.+++|+.+|+|+|.+|++||.+|+||+|||+||+||+. +++++|++++.+++++++.
T Consensus 156 v~~~~i~~ll~~g~ipV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~~~~~i~~i~~~~~~~~~~ 235 (441)
T PRK05279 156 IDAEAIRRQLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDEDGELIRELSPNEAQALLE 235 (441)
T ss_pred EeHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCCCchhhhCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999985 5799999999999988875
Q ss_pred hhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcc
Q 007275 318 QRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRL 397 (609)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~ 397 (609)
.-. .|.+ +| |
T Consensus 236 ~~~--------------------------~~~~------------------------~g-g------------------- 245 (441)
T PRK05279 236 ALE--------------------------DGDY------------------------NS-G------------------- 245 (441)
T ss_pred hhh--------------------------cCCC------------------------Cc-c-------------------
Confidence 210 0012 23 4
Q ss_pred cCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccccccccccccCCcCCHHHHHHHHhhhHhhccCcc
Q 007275 398 NGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVR 477 (609)
Q Consensus 398 ~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~d~~~~IR~a~~~D~~~I~~L~~~~~~~~~~~~ 477 (609)
|.+||++|..++++|+++|||+|++.+++|+.|||+.+|.||+|..+.|+.||+++.+|++.|.+++++.....+..+
T Consensus 246 --M~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~~y~~IR~at~~D~~~I~~L~~~~~~~~~~~~ 323 (441)
T PRK05279 246 --TARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVMESLEQLRRATIDDVGGILELIRPLEEQGILVR 323 (441)
T ss_pred --HHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecCchHHeEeCCHHHHHHHHHHHHHHHHcCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988777777677
Q ss_pred CCHHHHHhhcCeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeHHH
Q 007275 478 RTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRT 557 (609)
Q Consensus 478 ~~~e~l~~~i~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~~a 557 (609)
++.+.+..+...+|++++|++++||+.+.+......++|..++|+|+|||+|+|++||++++++|+++|++.+++.+.++
T Consensus 324 ~~~~~l~~~~~~~~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~~~a 403 (441)
T PRK05279 324 RSREQLEREIDKFTVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLTTRT 403 (441)
T ss_pred cCHHHHhcccCcEEEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 88888888888899999999999999888655556789999999999999999999999999999999999998888889
Q ss_pred HHHHHHCCCeEeeeecchhHhhhhcccCCCceeEEeec
Q 007275 558 ADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKL 595 (609)
Q Consensus 558 ~~fYek~GF~~~~~~~lp~~~~~~y~~~~~s~i~mkkl 595 (609)
.+||+++||+.++...+|..++..|++.|+|++|+|+|
T Consensus 404 ~~fY~k~GF~~~g~~~~~~~~~~~y~~~r~~~~~~~~~ 441 (441)
T PRK05279 404 AHWFLERGFVPVDVDDLPEAKRQLYNYQRRSKVLVKDL 441 (441)
T ss_pred HHHHHHCcCEECChhhCcHHHHHhhCcccCceeeeecC
Confidence 99999999999999999999999999999999999986
No 4
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-53 Score=425.01 Aligned_cols=259 Identities=38% Similarity=0.618 Sum_probs=243.3
Q ss_pred cCCeEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHH-HHHH
Q 007275 98 RGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAA 175 (609)
Q Consensus 98 ~~k~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~-~~~~ 175 (609)
++|++|||+||+++.+++ +++++++|++|+..|.++||||||||||+..++++|++++|++|+|+||+++|+++ |++.
T Consensus 1 ~~k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~mvl~ 80 (265)
T COG0548 1 RGKTIVIKLGGSAMEDENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEMVLG 80 (265)
T ss_pred CCceEEEEECceeecCchHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHHHHH
Confidence 579999999999999987 89999999999999999999999999999999999999999999999999999999 7888
Q ss_pred HHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEE
Q 007275 176 GGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVI 255 (609)
Q Consensus 176 g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPV 255 (609)
|.+|..|++. |+++|.+ ++++++.||+|+.|++.+...++|+||+|+|+++|.+.|+.+|++|+|||
T Consensus 81 G~vNk~iva~---------l~~~g~~----avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpV 147 (265)
T COG0548 81 GTVNKEIVAR---------LSKHGGQ----AVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPV 147 (265)
T ss_pred HHHHHHHHHH---------HHHhCCc----ceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceE
Confidence 8999999997 4788876 89999999999999999988889999999999999999999999999999
Q ss_pred EcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccCCC-Cc--cccccCHHHHHHHHHhhchhhhhHhhhhhh
Q 007275 256 LSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDES-GH--LIRFLTLQEADSLIRQRVKQSEIAANYVKA 332 (609)
Q Consensus 256 i~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~~~-~~--lI~~it~~e~~~l~~~~~~~~~~~~~~~~~ 332 (609)
++|++.+.+|+.+|+|+|++|+++|.+|+|++||+|||++|+..+ +. +|+.++.+|++++++++.
T Consensus 148 iapia~~~~G~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~~s~i~~~~~~~~~~li~~~~------------ 215 (265)
T COG0548 148 IAPIAVDEDGETLNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGDPSLISELDAEEAEELIEQGI------------ 215 (265)
T ss_pred EecceECCCCcEEeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCCCceeeccCCHHHHHHHHhcCC------------
Confidence 999999999999999999999999999999999999999998543 33 999999999999987642
Q ss_pred hhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHHHHHH
Q 007275 333 VAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCR 412 (609)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~a~~ 412 (609)
++ | | |.+||++|+.||+
T Consensus 216 -----------------i~------------------------~-G---------------------Mi~Kv~~a~~A~~ 232 (265)
T COG0548 216 -----------------IT------------------------G-G---------------------MIPKVEAALEALE 232 (265)
T ss_pred -----------------cc------------------------C-c---------------------cHHHHHHHHHHHH
Confidence 22 2 5 9999999999999
Q ss_pred cCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 413 RGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 413 ~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
.||++|||+||+.++++|.|||+++++||+|.
T Consensus 233 ~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~ 264 (265)
T COG0548 233 SGVRRVHIISGRVPHSLLLELFTRDGIGTMIV 264 (265)
T ss_pred hCCCeEEEecCCCcchHHHHHhcCCCcceEec
Confidence 99999999999999999999999999999986
No 5
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=6.9e-52 Score=427.44 Aligned_cols=278 Identities=51% Similarity=0.796 Sum_probs=253.8
Q ss_pred HHHHHHHHhhhhHHhhcCCeEEEEeCCcccCCCChHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCcc
Q 007275 82 QFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYR 161 (609)
Q Consensus 82 ~~~~~~r~a~pyi~~~~~k~iVIKlGGsvl~~~~l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~r 161 (609)
+|+++||+++|||++||++++|||+||++|.++++++++++|+.|++.|+++||||||||++++++.++|+++++++|+|
T Consensus 1 ~~~~~~~~~~~yi~~~~~~~~VIKlGG~ai~~~~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~R 80 (280)
T cd04237 1 QFVDWFREAAPYINAHRGKTFVIAFGGEAVAHPNFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLR 80 (280)
T ss_pred ChHHHHHHHhHHHHHhCCCEEEEEEChHHhcCchHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcC
Confidence 59999999999999999999999999999988788999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCC-cceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeC
Q 007275 162 ITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSS-RWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD 240 (609)
Q Consensus 162 vt~~~~l~~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~-~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~ 240 (609)
+|++++|+++.++++.++..+++.|++ +++. +++..++++.+++++.+++++++++.|+|++|+++.+|
T Consensus 81 vT~~~~l~~~~~~~g~v~~~l~~~l~~----------~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~ 150 (280)
T cd04237 81 ITDAAALECVKEAAGAVRLEIEALLSM----------GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRID 150 (280)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHh----------hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEc
Confidence 999999999965579999999998643 3331 12234688889999999999888889999999999999
Q ss_pred HHHHHHHHhCCCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-CCCccccccCHHHHHHHHHhh
Q 007275 241 VTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQR 319 (609)
Q Consensus 241 ~~~I~~LL~~G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-~~~~lI~~it~~e~~~l~~~~ 319 (609)
.+.|++||++|+|||++|.+.+.+|+.+|+|+|.+|++||.+|+||+|+|+||+||+. +++++|++++.+|+++++..+
T Consensus 151 ~~~i~~lL~~g~ipv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~~~~~i~~i~~~e~~~l~~~~ 230 (280)
T cd04237 151 ADAIRRQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDDDGELIRELTAQEAEALLETG 230 (280)
T ss_pred HHHHHHHHHCCCEEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCccccCCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999986 479999999999999998653
Q ss_pred chhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccC
Q 007275 320 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 399 (609)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~ 399 (609)
. + -+| |
T Consensus 231 ~-----------------------------~-----------------------~~g-g--------------------- 236 (280)
T cd04237 231 A-----------------------------L-----------------------LTN-D--------------------- 236 (280)
T ss_pred C-----------------------------C-----------------------CCC-C---------------------
Confidence 2 0 023 5
Q ss_pred CHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccc
Q 007275 400 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (609)
Q Consensus 400 m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i 443 (609)
|.+||++|..|+++|++++||+|++.+++|+.|||+++|.||+|
T Consensus 237 M~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 237 TARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 99999999999999999999999999999999999999999986
No 6
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=100.00 E-value=7.6e-51 Score=420.73 Aligned_cols=274 Identities=27% Similarity=0.450 Sum_probs=252.0
Q ss_pred hhHHHHHHHHhhhhHHhhcCCeEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccC
Q 007275 80 DEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG 158 (609)
Q Consensus 80 ~~~~~~~~r~a~pyi~~~~~k~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~ 158 (609)
..+++++||+++|||++||++++|||+||+++.++. .+.+++||+.|+..|.++|||||||++++..++++|+++++++
T Consensus 4 ~~~~~~~~~~~~pyi~~~~~~~~VIk~gG~~~~~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~ 83 (284)
T CHL00202 4 NDERVQVLSEALPYIQKFRGRIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWN 83 (284)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeEC
Confidence 457899999999999999999999999999998766 4699999999999999999999999999999999999999999
Q ss_pred CccCCCHHHHHHH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEe
Q 007275 159 RYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVK 237 (609)
Q Consensus 159 g~rvt~~~~l~~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~ 237 (609)
|+|+|++++|+.+ +++++.+|..+++. |+++|++ ++++++.|++++++++. +++|++++|+++
T Consensus 84 G~rvT~~~~l~~~~~~l~g~ln~~lv~~---------L~~~Gv~----av~l~~~d~~~i~a~~~---~~~d~~~~G~i~ 147 (284)
T CHL00202 84 GIRVTDKVTMEIVEMVLAGKVNKDLVGS---------INANGGK----AVGLCGKDANLIVARAS---DKKDLGLVGEIQ 147 (284)
T ss_pred CcccCCHHHHHHHHHHHhhHHHHHHHHH---------HHhCCCC----eeeeeeccCCEEEEEeC---CCcccccceeEE
Confidence 9999999999998 77899999999997 4788887 99999999999999974 557899999999
Q ss_pred eeCHHHHHHHHhCCCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccCC----CCccccccCHHHHH
Q 007275 238 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEAD 313 (609)
Q Consensus 238 ~v~~~~I~~LL~~G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~~----~~~lI~~it~~e~~ 313 (609)
.++.+.|+.+|+.|+|||++|++.+.+|+.+|+|+|.+|+++|.+|+||+|+|+||++|++. .+++|++++.+|++
T Consensus 148 ~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~~d~~~~i~~i~~~e~~ 227 (284)
T CHL00202 148 QVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADINDPNSLISTLNIKEAR 227 (284)
T ss_pred ecCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCCCCCCCccccccHHHHH
Confidence 99999999999999999999998999999999999999999999999999999999999853 37899999998888
Q ss_pred HHHHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccch
Q 007275 314 SLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQER 393 (609)
Q Consensus 314 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~ 393 (609)
+++..+ +.+| |
T Consensus 228 ~l~~~g-----------------------------------------------------~~tG-G--------------- 238 (284)
T CHL00202 228 NLASTG-----------------------------------------------------IISG-G--------------- 238 (284)
T ss_pred HHHhcC-----------------------------------------------------CCCC-C---------------
Confidence 886321 1133 5
Q ss_pred hhcccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 394 LSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 394 ~~~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
|.+||++|..|+++|++++||+||+.++++|.|+|++++.||+|.
T Consensus 239 ------M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 239 ------MIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred ------HHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 999999999999999999999999999999999999999999985
No 7
>PLN02512 acetylglutamate kinase
Probab=100.00 E-value=1.1e-48 Score=408.66 Aligned_cols=277 Identities=29% Similarity=0.481 Sum_probs=253.5
Q ss_pred chhHHHHHHHHhhhhHHhhcCCeEEEEeCCcccCCCCh-HHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCccccc
Q 007275 79 EDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYL-DPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYL 157 (609)
Q Consensus 79 ~~~~~~~~~r~a~pyi~~~~~k~iVIKlGGsvl~~~~l-~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~ 157 (609)
+...|+++||+++|||++||++++||||||++++++++ ..++++|+.|+..|.++|||||||++++..++++|++++++
T Consensus 27 ~~~~~~~~~r~~~pyi~~~~~~tiVIKlGGs~i~d~~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~ 106 (309)
T PLN02512 27 TNLSRVDILSEALPFIQRFRGKTVVVKYGGAAMKDPELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFK 106 (309)
T ss_pred chHHHHHHHHHHhHHHHHHCCCeEEEEECCeeccChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCC
Confidence 56799999999999999999999999999999998774 67999999999999999999999999999999999999999
Q ss_pred CCccCCCHHHHHHH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeE
Q 007275 158 GRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEV 236 (609)
Q Consensus 158 ~g~rvt~~~~l~~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v 236 (609)
+|+|+|+.+.++.+ +++++++|..+++. |+++|++ ++++++.|++|+++++++ +++|++++|++
T Consensus 107 ~G~rvT~~~~lei~~~~l~g~ln~~lv~~---------L~~~Gv~----av~l~g~d~~~i~a~~~~--~~~~~~~~G~i 171 (309)
T PLN02512 107 NGLRVTDAETMEVVEMVLVGKVNKSLVSL---------INKAGGT----AVGLSGKDGRLLRARPSP--NSADLGFVGEV 171 (309)
T ss_pred CCCcCCCHHHHHHHHHHHhhHHHHHHHHH---------HHHcCCC----eEEeehhhCCEEEEEEcC--cCcccccccee
Confidence 99999999999998 77899999999986 5889988 899999999999999862 44689999999
Q ss_pred eeeCHHHHHHHHhCCCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC----CCCccccccCHHHH
Q 007275 237 KKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD----ESGHLIRFLTLQEA 312 (609)
Q Consensus 237 ~~v~~~~I~~LL~~G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~----~~~~lI~~it~~e~ 312 (609)
+.++.+.|+.+|+.|+|||++|++.++.|+.+++|+|.+|++||.+|+||+|+|+|||||++ +++++|++++.+|+
T Consensus 172 ~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~~~~~lI~~i~~~e~ 251 (309)
T PLN02512 172 TRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKDDPGSLVKELDIKGV 251 (309)
T ss_pred eecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCCCCcCCCcccCHHHH
Confidence 99999999999999999999999998899999999999999999999999999999999985 35899999999988
Q ss_pred HHHHHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccc
Q 007275 313 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 392 (609)
Q Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~ 392 (609)
++++..+ ..+| |
T Consensus 252 ~~l~~~~-----------------------------------------------------~vtG-G-------------- 263 (309)
T PLN02512 252 RKLIADG-----------------------------------------------------KIAG-G-------------- 263 (309)
T ss_pred HHHHhCC-----------------------------------------------------CCCC-c--------------
Confidence 8876431 1133 5
Q ss_pred hhhcccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccccc
Q 007275 393 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (609)
Q Consensus 393 ~~~~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~ 445 (609)
|.+||++|..+++.|++++||+||+.+++++.++|++++.||+|.+
T Consensus 264 -------M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~ 309 (309)
T PLN02512 264 -------MIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMITG 309 (309)
T ss_pred -------HHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEEeC
Confidence 9999999999999999999999999999899999999999999863
No 8
>PRK00942 acetylglutamate kinase; Provisional
Probab=100.00 E-value=7.6e-47 Score=391.52 Aligned_cols=277 Identities=34% Similarity=0.538 Sum_probs=253.1
Q ss_pred hhHHHHHHHHhhhhHHhhcCCeEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccC
Q 007275 80 DEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG 158 (609)
Q Consensus 80 ~~~~~~~~r~a~pyi~~~~~k~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~ 158 (609)
...++.+||+++|||++||++++|||+||++|++++ +..++++|+.|++.|.++|||||+|++++.+++++++.+++.+
T Consensus 4 ~~~~~~~~r~~~~yi~~~~~~~iViK~GGs~l~~~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~ 83 (283)
T PRK00942 4 ALEKAEVLSEALPYIQRFMGKTIVIKYGGNAMTDEELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVN 83 (283)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeC
Confidence 457999999999999999999999999999998877 6789999999999999999999999999999999999999999
Q ss_pred CccCCCHHHHHHH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEe
Q 007275 159 RYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVK 237 (609)
Q Consensus 159 g~rvt~~~~l~~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~ 237 (609)
|+|+|+.+.++.. ++++|+++..+++. |+++|++ ++++++.+++++++++. .+++|++++|+++
T Consensus 84 g~~~t~~~~l~~~~~a~~G~l~~~i~~~---------L~~~Gv~----a~~l~~~~~~~~ta~~~--~~~~~~~~~g~i~ 148 (283)
T PRK00942 84 GLRVTDAETMEVVEMVLAGKVNKELVSL---------INKHGGK----AVGLSGKDGGLITAKKL--EEDEDLGFVGEVT 148 (283)
T ss_pred CEecCCHHHHHHHHHHHcCchHHHHHHH---------HHhCCCC----ccceeeccCCEEEEEEC--CCCCCCccccceE
Confidence 9999999999987 55558999999875 5788988 89999999999999986 6778999999999
Q ss_pred eeCHHHHHHHHhCCCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccCC-CCccccccCHHHHHHHH
Q 007275 238 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE-SGHLIRFLTLQEADSLI 316 (609)
Q Consensus 238 ~v~~~~I~~LL~~G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~~-~~~lI~~it~~e~~~l~ 316 (609)
.+|.+.|+.+|+.|.|||++|++++.+|+++|+|+|.+|++||.+|+||+|+|+|||||++. ++++|++++.+|++++.
T Consensus 149 ~i~~~~l~~ll~~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~~~~~i~~i~~~e~~~~~ 228 (283)
T PRK00942 149 PVNPALLEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDDKGQLISELTASEAEELI 228 (283)
T ss_pred EECHHHHHHHHHCCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccCCCcccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865 59999999999988876
Q ss_pred HhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhc
Q 007275 317 RQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSR 396 (609)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~ 396 (609)
..+. .+| |
T Consensus 229 ~~~~-----------------------------------------------------~tg-g------------------ 236 (283)
T PRK00942 229 EDGV-----------------------------------------------------ITG-G------------------ 236 (283)
T ss_pred HcCC-----------------------------------------------------CCC-c------------------
Confidence 4311 123 4
Q ss_pred ccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccccc
Q 007275 397 LNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (609)
Q Consensus 397 ~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~d 446 (609)
|.+||++|..+++.|+.+|||+|+..+++||.++|++++.||+|.++
T Consensus 237 ---m~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 283 (283)
T PRK00942 237 ---MIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVPD 283 (283)
T ss_pred ---hHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEecC
Confidence 99999999999999999999999999998899999999999999864
No 9
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=100.00 E-value=1.1e-45 Score=381.93 Aligned_cols=269 Identities=32% Similarity=0.524 Sum_probs=246.2
Q ss_pred HHHhhhhHHhhcCCeEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCH
Q 007275 87 FREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDS 165 (609)
Q Consensus 87 ~r~a~pyi~~~~~k~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~ 165 (609)
+|++.|||++||++++||||||+++++++ ...++++|+.|+..|.++|||||+|++++..+.++++++++.+|+|+|++
T Consensus 2 ~~~~~~yi~~~~~~~~ViKlGGs~i~~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~ 81 (279)
T cd04250 2 LIEALPYIQKFRGKTVVIKYGGNAMKDEELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDE 81 (279)
T ss_pred hhhhhHHHHHHcCCEEEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCH
Confidence 79999999999999999999999999876 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCc---ccCcCCcceeeEeeeCH
Q 007275 166 ESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGV---VDGVDYGATGEVKKVDV 241 (609)
Q Consensus 166 ~~l~~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~---~~~~d~g~~G~v~~v~~ 241 (609)
++++.+ ++++|++|..+++. |+++|++ ++++++.+++++++++.++ ++++||+++|+++.++.
T Consensus 82 ~~~~~~~~~~~g~ln~~l~~~---------L~~~Gv~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~ 148 (279)
T cd04250 82 ETMEIVEMVLVGKVNKEIVSL---------INRAGGK----AVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNP 148 (279)
T ss_pred HHHHHHHHHHcCchHHHHHHH---------HHHcCCC----cceeecCCCCEEEEEECcccccCCCcccCcccceEEEcH
Confidence 999887 45558999999886 5888988 8999999999999999876 67889999999999999
Q ss_pred HHHHHHHhCCCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccCC----CCccccccCHHHHHHHHH
Q 007275 242 TRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEADSLIR 317 (609)
Q Consensus 242 ~~I~~LL~~G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~~----~~~lI~~it~~e~~~l~~ 317 (609)
+.|+++|+.|.|||+++++.++.|+.+++|+|.+|+++|.+|+||+|+|+|||||++. ++++|++++.+|++++..
T Consensus 149 ~~i~~ll~~g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~ 228 (279)
T cd04250 149 ELLETLLEAGYIPVIAPVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPNDPGSLISEISLKEAEELIA 228 (279)
T ss_pred HHHHHHHHCCCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCCCccccccCCHHHHHHHHH
Confidence 9999999999999999998888899999999999999999999999999999999853 389999999999888764
Q ss_pred hhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcc
Q 007275 318 QRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRL 397 (609)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~ 397 (609)
.+ ..+| |
T Consensus 229 ~~-----------------------------------------------------~~tG-g------------------- 235 (279)
T cd04250 229 DG-----------------------------------------------------IISG-G------------------- 235 (279)
T ss_pred cC-----------------------------------------------------CCCC-c-------------------
Confidence 31 1134 5
Q ss_pred cCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccc
Q 007275 398 NGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (609)
Q Consensus 398 ~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i 443 (609)
|.+||++|..++++|+.+|||+||..+++++.++|++++.||+|
T Consensus 236 --m~~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 236 --MIPKVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred --hHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999986
No 10
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-46 Score=396.82 Aligned_cols=437 Identities=41% Similarity=0.584 Sum_probs=375.8
Q ss_pred chhHHHHHHHHhhhhHHhhcCCeEEEEeCCcccCCCChHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccC
Q 007275 79 EDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG 158 (609)
Q Consensus 79 ~~~~~~~~~r~a~pyi~~~~~k~iVIKlGGsvl~~~~l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~ 158 (609)
...+++++++|++|||..||++++||+.+|.++....+..++++++.|+..|.++|||||++||+++.+...++++.+.+
T Consensus 74 s~~~~v~~~~e~l~yi~~~~~q~fvV~~~g~~~~t~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~ 153 (520)
T KOG2436|consen 74 SSDTTVRILRESLPYITSFRDQKFVVIKSGEAISTSLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVD 153 (520)
T ss_pred CChhHHHHHHHHHHHHHHhcCceEEEEecccccccchHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCccccc
Confidence 66889999999999999999999999999999865558999999999999999999999999999999999999999999
Q ss_pred CccCCCHHHHHHH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeec--CCceeeeeecCcccCcCCcceee
Q 007275 159 RYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVA--SGNFLAAKRKGVVDGVDYGATGE 235 (609)
Q Consensus 159 g~rvt~~~~l~~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~--d~~~l~ak~~~~~~~~d~g~~G~ 235 (609)
++|+|++..|+++ +..+++-|..+... |+++|.. +.+.+.- .++|+.++++++.++.+|+++|+
T Consensus 154 ~~RvTda~t~q~~~~~~~~E~n~~lv~n---------L~~~g~~----ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~ge 220 (520)
T KOG2436|consen 154 GYRVTDAHTLQAAKESVSLEANLNLVIN---------LSQLGTR----ARPSSSGVRVGNFFPADRNGVLDGEDYGLVGE 220 (520)
T ss_pred ceecccHHHHHHhhhcchhhhhhHHHHH---------HHHhhce----eccccccccccceeecccccccccceeeeecc
Confidence 9999999999998 44677777666554 6788866 3333333 27799999999999999999999
Q ss_pred EeeeCHHHHHHHHhCCCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEec-ccccCCCCccccccCHHHHHH
Q 007275 236 VKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPILDESGHLIRFLTLQEADS 314 (609)
Q Consensus 236 v~~v~~~~I~~LL~~G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTD-vdgv~~~~~lI~~it~~e~~~ 314 (609)
|.++|.+.|+.+++.|.+|+++.++.+++|+++|||+|++|.++|.+|+|+++++++| +.++++++..++.++.+|...
T Consensus 221 i~~vd~d~i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~~L~~~kli~l~d~g~~l~e~ge~~S~l~l~~e~~ 300 (520)
T KOG2436|consen 221 IKKVDVDRIRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELALALGPDKLILLMDKGRILKENGEDISSLILQEEDA 300 (520)
T ss_pred cceechhhhhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHhccCcceeEEecccccccccCcccccccccchhHh
Confidence 9999999999999999999999999999999999999999999999999999999999 567889999999999999999
Q ss_pred HHHhhchhhhhHhhhhhhhhcccccccCCCCC-Ccccc--cCCCCCc-ccccccccccCCcccCCCCCCccccccccccc
Q 007275 315 LIRQRVKQSEIAANYVKAVAEEDITCFGHSDS-IGSVY--SSQNGKT-FSERRIATFNNGVGFDNGNGLWSSEQGFAIGG 390 (609)
Q Consensus 315 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~ 390 (609)
+++...+|+++|++++++|.+.....+..+-. ++.++ -.+.... ..+++..+|++|.++..|+++|+..|+|+.++
T Consensus 301 ~l~k~~qq~~~a~~~v~aV~~~~~~~~p~~~s~~i~~~t~~n~~~~~~te~G~~t~~~~gv~~~k~~sl~~~~~~~al~~ 380 (520)
T KOG2436|consen 301 GLRKPSQQKNIAANNVKAVKDGIDSSLPRPSSYNIAITTQQNLIKELFTEKGAGTLISGGVGINKGNSLISQSFKRALDL 380 (520)
T ss_pred hhhhhhhhcccccccchhhhhheeeccCcCCCCCcceeecccccceeeccCCCCccccCceeeecCcccccchhhhhcch
Confidence 99999999999999999999988774443321 22221 1111111 11558889999999999999999999999999
Q ss_pred cchhhcccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccccccccccccCCcCCHHHHHHHHhhhH
Q 007275 391 QERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLV 470 (609)
Q Consensus 391 ~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~d~~~~IR~a~~~D~~~I~~L~~~~~ 470 (609)
+++++|+++.++++.+|.+.|..+++++|..||+.++.++++.|.+.++||+. .+.+..++.+..+|+|.|....++..
T Consensus 381 ~~~~~rln~~lse~i~a~~~~~~~i~~~~~~D~~~e~V~~ldkf~~~~~~~~~-~~V~d~ifn~~~~dfp~i~wr~r~~~ 459 (520)
T KOG2436|consen 381 EEYIDRLNGSLSELIAAGDYCGGAIKTYELSDGTNEGVLYLDKFAVSGMGTGS-SDVSDGIFNVMVEDFPEILWRSRPLN 459 (520)
T ss_pred HHHHHHhhchHHHHHHHHHHhccceEEEEccCCCcccceeeeecccCCccccc-chhhHHHHHHHHHhhhhheeeccccc
Confidence 99999999999999999999999999999999999999999999999999988 67888899999999998888877766
Q ss_pred hhccC-ccCCHHHHHhhcCeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHH
Q 007275 471 ESGAL-VRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLL 535 (609)
Q Consensus 471 ~~~~~-~~~~~e~l~~~i~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL 535 (609)
..... ..++...+. ..+.+++.+.+++++.|+.+.++. ++..+.|.++.|+++.+.+++
T Consensus 460 ~~~~w~f~rs~g~L~-~~~~~lfwyg~~~i~~~a~~~~~~-----~v~~~~~~~d~~~s~~n~k~~ 519 (520)
T KOG2436|consen 460 EVNKWYFRRSEGSLR-ALDFKLFWYGEGQIIKCAALFQFF-----EVAAMSVASDIRPSWQNDKLL 519 (520)
T ss_pred ccceEEEeccHHHHh-ccCcEEEEecCcHHHHHHHhhhhh-----HHHHhhhccccCccccCCCCC
Confidence 65543 334444443 557778888899999999988653 677889999999988776653
No 11
>PRK04531 acetylglutamate kinase; Provisional
Probab=100.00 E-value=1.2e-42 Score=372.51 Aligned_cols=333 Identities=21% Similarity=0.271 Sum_probs=267.5
Q ss_pred CCCCchhHHHHHHHHhhhhHHhhcCCeEEEEeCCcccCCCChHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcc
Q 007275 75 YNPVEDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA 154 (609)
Q Consensus 75 g~~~~~~~~~~~~r~a~pyi~~~~~k~iVIKlGGsvl~~~~l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~ 154 (609)
|+.+++.+|+++||++.|| +++|||+||+++.+ .++.++++|+.|+..|.++||||||||||+..++++|+++
T Consensus 18 ~~~~e~~~~l~~F~~~~~~------~~~VIKiGG~~l~~-~~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~ 90 (398)
T PRK04531 18 ASAKEISQYLKRFSQLDAE------RFAVIKVGGAVLRD-DLEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEK 90 (398)
T ss_pred CChhhhHHHHHHHhCcCCC------cEEEEEEChHHhhc-CHHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCc
Confidence 5666788888888888888 89999999999974 4799999999999999999999999999999999999999
Q ss_pred cccCCccCCCHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCccee
Q 007275 155 KYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATG 234 (609)
Q Consensus 155 ~~~~g~rvt~~~~l~~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G 234 (609)
++++|.|+|++++|+++.++.+.+|..|++
T Consensus 91 ~~v~G~RVTd~~tl~vv~~~l~~vn~~lv~-------------------------------------------------- 120 (398)
T PRK04531 91 ETVNGLRVTSPEALAIVRKVFQRSNLDLVE-------------------------------------------------- 120 (398)
T ss_pred EEECCEecCCHHHHHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 999999999999999995555577766643
Q ss_pred eEeeeCHHHHHHHHhCCCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-CCCccccccCH-HHH
Q 007275 235 EVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTL-QEA 312 (609)
Q Consensus 235 ~v~~v~~~~I~~LL~~G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-~~~~lI~~it~-~e~ 312 (609)
.|+.+|+.|.|||++|++.+++|+++|+|+|.+|++||.+|+|++|||+||++|+. .+|++|+.++. +++
T Consensus 121 --------~I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~~g~~i~~i~~~~e~ 192 (398)
T PRK04531 121 --------AVESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDADGKLISSINLSTEY 192 (398)
T ss_pred --------HHHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCCCCCcccCCHHHHH
Confidence 27889999999999999999999999999999999999999999999999999985 57999999997 577
Q ss_pred HHHHHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccc
Q 007275 313 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 392 (609)
Q Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~ 392 (609)
+.++..+. ++ | |
T Consensus 193 ~~l~~~~~-----------------------------vt------------------------g-G-------------- 204 (398)
T PRK04531 193 DHLMQQPW-----------------------------IN------------------------G-G-------------- 204 (398)
T ss_pred HHHHhcCC-----------------------------CC------------------------c-c--------------
Confidence 77754311 22 3 5
Q ss_pred hhhcccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccccccccc-ccccCCcCCHHHHHHHHhhhHh
Q 007275 393 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYE-GTRTAKVTDLSGIKQIIQPLVE 471 (609)
Q Consensus 393 ~~~~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~d~~~-~IR~a~~~D~~~I~~L~~~~~~ 471 (609)
|.+||++|..+++ +++++|+++++.+++|+.|||+++|.||+|.....+ .......=|.+.+.+++....
T Consensus 205 -------M~~KL~~a~~al~-~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~~i~~~~~~~~~d~~~l~~ll~~sf- 275 (398)
T PRK04531 205 -------MKLKLEQIKELLD-RLPLESSVSITSPSDLAKELFTHKGSGTLVRRGERILRATDWDELDLERLNLLIESSF- 275 (398)
T ss_pred -------HHHHHHHHHHHHh-CCCcEEEEEecCCCHHHHHHccCCCCCeEEecCCceeeeCChhhcCHHHHHHHHhhhc-
Confidence 9999999999996 466799999999999999999999999999976443 233344448888888873322
Q ss_pred hccCccCCHHHHHhhcCeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEE
Q 007275 472 SGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLF 551 (609)
Q Consensus 472 ~~~~~~~~~e~l~~~i~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~ 551 (609)
... ..+.|.+. ...+-++.++..-|++.+. +++...+|..|+|.+.-|+.|+++.++..+.+.. +.++
T Consensus 276 ---~r~-~~~~y~~~-~~~~~~y~~~~y~~~Aiv~--~~~~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~~-----~~L~ 343 (398)
T PRK04531 276 ---GRT-LKPDYFDT-TQLLRAYVSENYRAAAILT--ETGGGPYLDKFAVLDDARGEGLGRAVWNVMREET-----PQLF 343 (398)
T ss_pred ---ccc-hHHHHhcc-CCceEEEEeCCCcEEEEEe--cCCCceEeEEEEEccchhhcChHHHHHHHHHhhC-----CceE
Confidence 211 12333333 2334444455565666665 3467899999999999999999999999888764 3456
Q ss_pred EEe---HHHHHHH
Q 007275 552 LLT---TRTADWF 561 (609)
Q Consensus 552 l~t---~~a~~fY 561 (609)
+.+ ++...||
T Consensus 344 Wrsr~~n~~~~Wy 356 (398)
T PRK04531 344 WRSRHNNTINKFY 356 (398)
T ss_pred EEcCCCCCcccee
Confidence 654 2445665
No 12
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=100.00 E-value=2.6e-41 Score=343.34 Aligned_cols=244 Identities=26% Similarity=0.397 Sum_probs=214.7
Q ss_pred EEEEeCCcccCCCChHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHHHHHHHHHHHH
Q 007275 102 FVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMM 181 (609)
Q Consensus 102 iVIKlGGsvl~~~~l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~g~i~~~ 181 (609)
.|||+||+++++. +++++++|+.|++.|.++|||||||+|++..++++|++++|++|.|+|+++.|+.+..+++.+|..
T Consensus 1 ~ViKiGG~~~~~~-l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~~vn~~ 79 (248)
T cd04252 1 AVIKVGGAIIEDD-LDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFLEENLK 79 (248)
T ss_pred CEEEEChhhhhcc-HHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 3899999999874 899999999999999999999999999999999999999999999999999999996666799999
Q ss_pred HHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEEEcCCcc
Q 007275 182 IEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGY 261 (609)
Q Consensus 182 l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi~~~~~ 261 (609)
+++. |.++|++ ++++++ + ++.+++ .+++|+||+|+++++|.+.|+.+|+.|+|||++|++.
T Consensus 80 iv~~---------l~~~g~~----a~~l~~--~-~~~a~~---~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~ 140 (248)
T cd04252 80 LVEA---------LERNGAR----ARPITS--G-VFEAEY---LDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAE 140 (248)
T ss_pred HHHH---------HHhCCCC----cccccC--c-eEEEEE---CcCccCCccCceeeECHHHHHHHHHCCCeEEECCceE
Confidence 9987 4778887 777763 3 557776 4678999999999999999999999999999999999
Q ss_pred CCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-CCCccccccCH-HHHHHHHHhhchhhhhHhhhhhhhhccccc
Q 007275 262 SSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTL-QEADSLIRQRVKQSEIAANYVKAVAEEDIT 339 (609)
Q Consensus 262 ~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-~~~~lI~~it~-~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 339 (609)
+++|+++|+|+|++|+++|.+|+|++|||+||++|+. .++++|++++. +++++++..+.
T Consensus 141 ~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltdv~GV~~~~g~~i~~i~~~~~~~~l~~~~~------------------- 201 (248)
T cd04252 141 TPSGQLLNVNADVAAGELARVLEPLKIVFLNETGGLLDGTGKKISAINLDEEYDDLMKQPW------------------- 201 (248)
T ss_pred CCCCCEEEECHHHHHHHHHHHcCCCeEEEEECCcccCCCCCCcccccCHHHHHHHHHHcCC-------------------
Confidence 9999999999999999999999999999999999986 45899999997 46777764311
Q ss_pred ccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHHHHHHc--CCCe
Q 007275 340 CFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRR--GVQR 417 (609)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~a~~~--Gv~~ 417 (609)
++ | | |.+||++|..+.+. |+..
T Consensus 202 ----------vt------------------------g-G---------------------M~~Kl~~~~~~~~~~~~~~~ 225 (248)
T cd04252 202 ----------VK------------------------Y-G---------------------TKLKIKEIKELLDTLPRSSS 225 (248)
T ss_pred ----------cC------------------------C-c---------------------hHHHHHHHHHHHHhCCCceE
Confidence 22 3 5 99999988888776 6667
Q ss_pred EEEeecccccchhhhhhhcCCCcccc
Q 007275 418 VHLLDGTIGGVLLLELFKRDGMGTMV 443 (609)
Q Consensus 418 v~i~~g~~~~~ll~el~~~~g~GT~i 443 (609)
+||++ +++|+.|||+++|.||+|
T Consensus 226 v~i~~---~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 226 VSITS---PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred EEEEC---CchHHHHHhcCCCCCccC
Confidence 88887 588999999999999986
No 13
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=100.00 E-value=4.9e-41 Score=342.39 Aligned_cols=255 Identities=18% Similarity=0.206 Sum_probs=219.2
Q ss_pred CCCCCchhHHHHHHHHhhhhHHhhcCCeEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCC
Q 007275 74 TYNPVEDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGH 152 (609)
Q Consensus 74 ~g~~~~~~~~~~~~r~a~pyi~~~~~k~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~ 152 (609)
+++++|+++|.+.|..+.|+= ..+.+|||+||+++.+++ +++++++|++|+..|.++||||||||+++..+.
T Consensus 13 ~~~~~e~~~~l~~f~~~~~~~---~~~f~VIK~GG~~~~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~---- 85 (271)
T cd04236 13 GGDPREARYWLTQFQIAMPND---WPAFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS---- 85 (271)
T ss_pred CCCHHHHHHHHHHhhccCCCC---CCCEEEEEEChhhhcCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc----
Confidence 357789999999999987651 237899999999997654 899999999999999999999999999998776
Q ss_pred cccccCCccCCCHHHHHHH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCc
Q 007275 153 EAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYG 231 (609)
Q Consensus 153 ~~~~~~g~rvt~~~~l~~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g 231 (609)
+.++. .+ +... .+|..|++. |+++|++ ++++++. ++++.+++ ..|+|
T Consensus 86 ~~~~~------------~~~~v~~-~~n~~Lv~~---------L~~~G~~----A~gl~g~-~~~i~a~~-----~~d~g 133 (271)
T cd04236 86 DLELQ------------AARSRLV-KDCKTLVEA---------LQANSAA----AHPLFSG-ESVLQAEE-----PEPGA 133 (271)
T ss_pred CCcch------------heehhHH-HHHHHHHHH---------HHhCCCC----eeeecCc-cceEEEEE-----cccCC
Confidence 22221 12 3344 788888886 4788987 8999887 68999987 25889
Q ss_pred ceeeEeeeCHHHHHHHHhCCCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-CCCccccccCH-
Q 007275 232 ATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTL- 309 (609)
Q Consensus 232 ~~G~v~~v~~~~I~~LL~~G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-~~~~lI~~it~- 309 (609)
++|+|++||.+.|+.+|+.|+|||++|++++.+|+++|+|+|.+|++||.+|+|+||||+||++|+. .++++|++++.
T Consensus 134 ~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~~g~lI~~l~~~ 213 (271)
T cd04236 134 SKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQKHKVLPQVHLP 213 (271)
T ss_pred ccceEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceECCCCCCccccCcH
Confidence 9999999999999999999999999999999999999999999999999999999999999999984 57999999995
Q ss_pred HHHHHHHHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCcccccccccc
Q 007275 310 QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIG 389 (609)
Q Consensus 310 ~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g 389 (609)
+|++.|++++. +++ ||.+|
T Consensus 214 ~e~~~li~~g~-----------------------------i~g-------------------------Gm~~k------- 232 (271)
T cd04236 214 ADLPSLSDAEW-----------------------------LSE-------------------------TEQNR------- 232 (271)
T ss_pred HHHHHHHhCCE-----------------------------EcC-------------------------Ceeec-------
Confidence 89999987743 433 63222
Q ss_pred ccchhhcccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccc
Q 007275 390 GQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (609)
Q Consensus 390 ~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i 443 (609)
.+|+++|+.++..|++ |||++ +++|+.||||+.|.||+|
T Consensus 233 -----------i~ki~~~l~~l~~g~s-v~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 233 -----------IQDIATLLNALPSMSS-AVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred -----------hHHHHHHHHhcccCCe-EEEeC---hHHHHHHHhccCCCCCcC
Confidence 7899999999999999 99998 678999999999999987
No 14
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=2.2e-40 Score=338.48 Aligned_cols=253 Identities=31% Similarity=0.512 Sum_probs=230.9
Q ss_pred EEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHHHHHH-HHHH
Q 007275 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAA-GGIR 179 (609)
Q Consensus 102 iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~-g~i~ 179 (609)
+||||||+++++++ +..++++|+.|+..|.++|||||+|++++.+++++++..++.++.|+|+++.++.+..++ +.+|
T Consensus 1 ~ViKlGGs~l~~~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ln 80 (256)
T cd04238 1 VVIKYGGSAMKDEELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAGKVN 80 (256)
T ss_pred CEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchH
Confidence 59999999999876 689999999999999999999999999999999999999999999999999999885555 8999
Q ss_pred HHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEEEcCC
Q 007275 180 MMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL 259 (609)
Q Consensus 180 ~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi~~~ 259 (609)
..+++. |+++|++ ++++++.+++++++++.+ .+++|++|+|+++.++.+.|+.+|++|+|||++|+
T Consensus 81 ~~i~~~---------L~~~Gv~----a~~l~~~~~~~~~~~~~~-~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~ 146 (256)
T cd04238 81 KELVSL---------LNRAGGK----AVGLSGKDGGLIKAEKKE-EKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPI 146 (256)
T ss_pred HHHHHH---------HHhCCCC----CCCcccccCCEEEEEECC-CCCCCcccccceEEECHHHHHHHHHCCCEEEECCc
Confidence 999886 5788988 899999999999999988 88899999999999999999999999999999999
Q ss_pred ccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccCCC-CccccccCHHHHHHHHHhhchhhhhHhhhhhhhhcccc
Q 007275 260 GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDES-GHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDI 338 (609)
Q Consensus 260 ~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~~~-~~lI~~it~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~ 338 (609)
+.+.+|+++|+|+|.+|+++|.+|+||+|+|+|||+|++.+ +++|++++.+|+++++..+
T Consensus 147 ~~~~~g~~~~~~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~~------------------- 207 (256)
T cd04238 147 AVDEDGETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDDPGSLISELTPKEAEELIEDG------------------- 207 (256)
T ss_pred EECCCCcEEEECHHHHHHHHHHHcCCCEEEEEeCCccccCCCCCccccCCHHHHHHHHHcC-------------------
Confidence 98889999999999999999999999999999999998654 8999999998888876421
Q ss_pred cccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHHHHHHcCCCeE
Q 007275 339 TCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRV 418 (609)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v 418 (609)
..+| | |.+||++|..+++.|+.+|
T Consensus 208 ----------------------------------~~~g-g---------------------m~~Kl~~a~~~~~~g~~~v 231 (256)
T cd04238 208 ----------------------------------VISG-G---------------------MIPKVEAALEALEGGVRKV 231 (256)
T ss_pred ----------------------------------CCCC-C---------------------hHHHHHHHHHHHHhCCCEE
Confidence 1123 4 9999999999999999899
Q ss_pred EEeecccccchhhhhhhcCCCcccc
Q 007275 419 HLLDGTIGGVLLLELFKRDGMGTMV 443 (609)
Q Consensus 419 ~i~~g~~~~~ll~el~~~~g~GT~i 443 (609)
+|+||+.+++|+.+||++++.||+|
T Consensus 232 ~I~~g~~~~~l~~~l~~~~~~GT~i 256 (256)
T cd04238 232 HIIDGRVPHSLLLELFTDEGIGTMI 256 (256)
T ss_pred EEeCCCCCcHHHHHHhcCCCCCCCC
Confidence 9999999999999999878999986
No 15
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=100.00 E-value=3.5e-39 Score=331.50 Aligned_cols=250 Identities=31% Similarity=0.428 Sum_probs=220.2
Q ss_pred eEEEEeCCcccCCCChHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccC---C--ccCCCHHHHHHHHHHH
Q 007275 101 TFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG---R--YRITDSESLAAAMEAA 175 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~---g--~rvt~~~~l~~~~~~~ 175 (609)
++|||+||+++.++ ..++++|+.|+..|.++|||||||++++..++++++++++++ | .|+|++++|+.+..+.
T Consensus 1 ~~ViK~GG~~l~~~--~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~ 78 (268)
T PRK14058 1 MIVVKIGGSVGIDP--EDALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAM 78 (268)
T ss_pred CEEEEEChHHhhCc--HHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHH
Confidence 58999999999874 578999999999999999999999999999999999999987 6 8999999999986666
Q ss_pred HHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecC----cccC----cCCcceeeEeeeCHHHHHHH
Q 007275 176 GGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKG----VVDG----VDYGATGEVKKVDVTRMRER 247 (609)
Q Consensus 176 g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~----~~~~----~d~g~~G~v~~v~~~~I~~L 247 (609)
+++|..+++. |+++|++ ++++++.+.+++++++.. +.++ +|++|+|+++.++.+.|+.+
T Consensus 79 ~~ln~~lv~~---------L~~~Gv~----a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~l 145 (268)
T PRK14058 79 ALINKQLVER---------LQSLGVN----AVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLL 145 (268)
T ss_pred HHHHHHHHHH---------HHhCCCC----ccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHH
Confidence 6999999986 5788987 899999999888877642 2333 68999999999999999999
Q ss_pred HhCCCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC----CCCccccccCHHHHHHHHHhhchhh
Q 007275 248 LDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD----ESGHLIRFLTLQEADSLIRQRVKQS 323 (609)
Q Consensus 248 L~~G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~----~~~~lI~~it~~e~~~l~~~~~~~~ 323 (609)
|+.|+|||++|++++.+|+.+|+|+|.+|+++|.+|+||+|+|+|||||++ +++++|++++.+|++++...
T Consensus 146 l~~g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~~----- 220 (268)
T PRK14058 146 LKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPDEGSLIERITPEEAEELSKA----- 220 (268)
T ss_pred HHCCCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCCCCcCccCcCHHHHHHHhhc-----
Confidence 999999999999888889999999999999999999999999999999985 34889999998888776421
Q ss_pred hhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHH
Q 007275 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (609)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~k 403 (609)
.+| | |.+|
T Consensus 221 --------------------------------------------------~tG-g---------------------M~~K 228 (268)
T PRK14058 221 --------------------------------------------------AGG-G---------------------MKKK 228 (268)
T ss_pred --------------------------------------------------cCC-c---------------------cHHH
Confidence 123 5 9999
Q ss_pred HHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccccc
Q 007275 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (609)
Q Consensus 404 l~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~ 445 (609)
|++|..++++|++++||+||+.+++|+.+| +|.||+|.+
T Consensus 229 l~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l---~G~GT~I~~ 267 (268)
T PRK14058 229 VLMAAEAVEGGVGRVIIADANVDDPISAAL---AGEGTVIVN 267 (268)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCcchHHHHh---CCCceEEec
Confidence 999999999999999999999999887777 456999865
No 16
>PRK12352 putative carbamate kinase; Reviewed
Probab=100.00 E-value=3.9e-39 Score=334.82 Aligned_cols=259 Identities=17% Similarity=0.216 Sum_probs=213.8
Q ss_pred CeEEEEeCCcccCCC-----------ChHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHH
Q 007275 100 GTFVVIISGEIVSSP-----------YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (609)
Q Consensus 100 k~iVIKlGGsvl~~~-----------~l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l 168 (609)
|+||||+||++|.++ ++..+++||++|+..|+++||||||||||+.++.++++++++ +|.|+|+.+
T Consensus 3 k~iVI~lGGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~-~g~rvt~~~-- 79 (316)
T PRK12352 3 ELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHER-EGLPLTPLA-- 79 (316)
T ss_pred cEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCccccc-CCCCCCCHH--
Confidence 799999999999662 247899999999999999999999999999999999999999 699999986
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCC---cceeEEEeecCCcee-eeeecCcc-----------cCcCCcce
Q 007275 169 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSS---RWHEVGVSVASGNFL-AAKRKGVV-----------DGVDYGAT 233 (609)
Q Consensus 169 ~~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~---~~~av~l~~~d~~~l-~ak~~~~~-----------~~~d~g~~ 233 (609)
..+.+++|.+..++++.|++ .|.++|.+. -++++++++.|++|+ .+||.|++ +++|++|+
T Consensus 80 ~~v~~~~g~i~~~i~~~L~~-----~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~ 154 (316)
T PRK12352 80 NCVADTQGGIGYLIQQALNN-----RLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFV 154 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEe
Confidence 45577787777788877754 577777332 123578899999999 57777875 45678775
Q ss_pred ee--------------EeeeCHHHHHHHHhCCCeEEEc-----CCccCCCCc----EEEecHHHHHHHHHHHcCCCEEEE
Q 007275 234 GE--------------VKKVDVTRMRERLDGGCLVILS-----NLGYSSSGE----VLNCNTYEVATACALAIEADKLIC 290 (609)
Q Consensus 234 G~--------------v~~v~~~~I~~LL~~G~IPVi~-----~~~~~~~ge----~~~id~D~lAa~lA~~L~Ad~LIi 290 (609)
+. |+.||.+.|+.||++|+|||++ |+..+..|+ .+|+|+|.+|+++|.+|+||+|||
T Consensus 155 ~d~g~G~rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~ 234 (316)
T PRK12352 155 EDAGRGYRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVI 234 (316)
T ss_pred ecCCCCeEEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEE
Confidence 55 9999999999999999997776 766665555 556999999999999999999999
Q ss_pred EecccccC-----CCCccccccCHHHHHHHHHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccc
Q 007275 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (609)
Q Consensus 291 LTDvdgv~-----~~~~lI~~it~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (609)
|||++|++ +++++|++++.+|+++++.++.
T Consensus 235 LTDV~GV~~d~~~~~~~li~~lt~~e~~~li~~g~--------------------------------------------- 269 (316)
T PRK12352 235 TTGVEKVCIHFGKPQQQALDRVDIATMTRYMQEGH--------------------------------------------- 269 (316)
T ss_pred EeCchhhccCCCCCCcccccccCHHHHHHHHhcCC---------------------------------------------
Confidence 99999984 3578999999999999986431
Q ss_pred cccCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccccc
Q 007275 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (609)
Q Consensus 366 ~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~ 445 (609)
+.+| | |.+||++|..|++.|+.++||++ +.. +.++|++. .||.|..
T Consensus 270 -------i~~G-g---------------------M~pKl~aA~~al~~Gv~~v~I~~---~~~-i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 270 -------FPPG-S---------------------MLPKIIASLTFLEQGGKEVIITT---PEC-LPAALRGE-TGTHIIK 315 (316)
T ss_pred -------cCCC-C---------------------CHHHHHHHHHHHHhCCCeEEEcc---hHH-HHHHHcCC-CCeEEEe
Confidence 1123 4 99999999999999999999997 343 66777766 8999853
No 17
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=1.4e-38 Score=325.11 Aligned_cols=244 Identities=34% Similarity=0.471 Sum_probs=215.6
Q ss_pred EEEEeCCcccCCCChHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccC---C--ccCCCHHHHHHHHHHHH
Q 007275 102 FVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG---R--YRITDSESLAAAMEAAG 176 (609)
Q Consensus 102 iVIKlGGsvl~~~~l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~---g--~rvt~~~~l~~~~~~~g 176 (609)
+||||||+++++ +++++++|+.| |.++|||||||++++..++++++++++++ | .|+|++++|+.+..+.+
T Consensus 1 ~VIKlGGs~l~~--~~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~~ 75 (257)
T cd04251 1 IVVKIGGSVVSD--LDKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVMG 75 (257)
T ss_pred CEEEEChHHhhC--hHHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHHH
Confidence 599999999985 67899999987 89999999999999999999999999985 7 49999999999966669
Q ss_pred HHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeec--------CcccCcCCcceeeEeeeCHHHHHHHH
Q 007275 177 GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRK--------GVVDGVDYGATGEVKKVDVTRMRERL 248 (609)
Q Consensus 177 ~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~--------~~~~~~d~g~~G~v~~v~~~~I~~LL 248 (609)
.+|..+++. |+++|++ ++++++.+.+++++++. +.....|++|+|+++.+|.+.|+.+|
T Consensus 76 ~ln~~iv~~---------L~~~Gi~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll 142 (257)
T cd04251 76 LINKKIVAR---------LHSLGVK----AVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALL 142 (257)
T ss_pred HHHHHHHHH---------HHhCCCC----ceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHH
Confidence 999999986 4788887 89999999999988875 22234589999999999999999999
Q ss_pred hCCCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccCCCCccccccCHHHHHHHHHhhchhhhhHhh
Q 007275 249 DGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQSEIAAN 328 (609)
Q Consensus 249 ~~G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~~~~~lI~~it~~e~~~l~~~~~~~~~~~~~ 328 (609)
+.|+|||++|++.+.+|+++|+|+|.+|+++|.+|+||+|+|+||++|++.++++|++++.+|+++++..
T Consensus 143 ~~g~vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~~~~i~~i~~~e~~~l~~~---------- 212 (257)
T cd04251 143 DAGYLPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLDGRVIERITVSDAESLLEK---------- 212 (257)
T ss_pred hCCCeEEEeCcEECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeCCcccCccCHHHHHHHHhh----------
Confidence 9999999999999989999999999999999999999999999999999888999999999888887621
Q ss_pred hhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHH
Q 007275 329 YVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAA 408 (609)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~ 408 (609)
+ +| | |.+||++|.
T Consensus 213 ---------------------~------------------------~g-g---------------------m~~Kl~aa~ 225 (257)
T cd04251 213 ---------------------A------------------------GG-G---------------------MKRKLLAAA 225 (257)
T ss_pred ---------------------C------------------------CC-c---------------------hHHHHHHHH
Confidence 1 23 5 999999999
Q ss_pred HHHHcCCCeEEEeecccccchhhhhhhcCCCcccc
Q 007275 409 FVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (609)
Q Consensus 409 ~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i 443 (609)
.++++|++++||+||+.++.+. .++. |.||.|
T Consensus 226 ~a~~~gv~~v~i~~g~~~~~l~-~~l~--g~gT~i 257 (257)
T cd04251 226 EAVEGGVREVVIGDARADSPIS-SALN--GGGTVI 257 (257)
T ss_pred HHHHcCCCEEEEecCCCccHHH-HHHc--CCCcCC
Confidence 9999999999999999998654 4443 469875
No 18
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=1.2e-38 Score=324.85 Aligned_cols=248 Identities=23% Similarity=0.341 Sum_probs=222.1
Q ss_pred EEEEeCCcccCCCC-hHHHHHHHHHHH-hCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHHH-HHHHHH
Q 007275 102 FVVIISGEIVSSPY-LDPILKDIAFLH-HLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM-EAAGGI 178 (609)
Q Consensus 102 iVIKlGGsvl~~~~-l~~l~~~Ia~L~-~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~-~~~g~i 178 (609)
+||||||+++++++ +++++++|+.+. ..|.++|||||+|++++.+++++++++++.+|.|+|+.+.++.+. ++.+++
T Consensus 1 ~ViK~GGs~l~~~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~ 80 (252)
T cd04249 1 LVIKLGGALLETEAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTA 80 (252)
T ss_pred CEEEEChHHhcChhhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcc
Confidence 58999999998765 889999999875 467899999999999999999999999999999999999999984 456899
Q ss_pred HHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEEEcC
Q 007275 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN 258 (609)
Q Consensus 179 ~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi~~ 258 (609)
|..+++.+ .++|++ ++++++.+++++++++.+ .|++++|+++.++.+.|+.+|+.|+|||+++
T Consensus 81 n~~lv~~l---------~~~Gv~----a~~l~~~~~~~~~~~~~~----~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~ 143 (252)
T cd04249 81 NKQLMAQA---------IKAGLK----PVGLSLADGGMTAVTQLD----PELGAVGKATANDPSLLNDLLKAGFLPIISS 143 (252)
T ss_pred cHHHHHHH---------HhCCCC----ceeeeccCCCEEEEEEcC----CCCCcccceEEEcHHHHHHHHHCCCEEEECC
Confidence 99998874 588987 899999999999999864 5899999999999999999999999999999
Q ss_pred CccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-CCCccccccCHHHHHHHHHhhchhhhhHhhhhhhhhccc
Q 007275 259 LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEED 337 (609)
Q Consensus 259 ~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-~~~~lI~~it~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 337 (609)
++.+++|+++|+|+|.+|+++|.+|+|| +||+|||+|++ .++++|++++.+|+++++..+.
T Consensus 144 ~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~g~----------------- 205 (252)
T cd04249 144 IGADDQGQLMNVNADQAATAIAQLLNAD-LVLLSDVSGVLDADKQLISELNAKQAAELIEQGV----------------- 205 (252)
T ss_pred CEECCCCCEeeecHHHHHHHHHHHcCCC-EEEEeCCcccCCCCCcCccccCHHHHHHHHhcCC-----------------
Confidence 9999999999999999999999999999 78999999986 4689999999998888764321
Q ss_pred ccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHHHHHHcCCCe
Q 007275 338 ITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQR 417 (609)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~a~~~Gv~~ 417 (609)
+ +| | |.+|+++|..+++.|+.+
T Consensus 206 ------------~------------------------~g-G---------------------m~~kl~~a~~~~~~~~~~ 227 (252)
T cd04249 206 ------------I------------------------TD-G---------------------MIVKVNAALDAAQSLRRG 227 (252)
T ss_pred ------------C------------------------cC-C---------------------cHHHHHHHHHHHHhCCCe
Confidence 1 23 5 999999999999999888
Q ss_pred EEEeecccccchhhhhhhcCCCcccc
Q 007275 418 VHLLDGTIGGVLLLELFKRDGMGTMV 443 (609)
Q Consensus 418 v~i~~g~~~~~ll~el~~~~g~GT~i 443 (609)
+||++|+.++ .|.++|++++.||+|
T Consensus 228 v~I~~g~~~~-~l~~~l~g~~~GT~I 252 (252)
T cd04249 228 IDIASWQYPE-QLTALLAGEPVGTKI 252 (252)
T ss_pred EEEEeCCCcc-HHHHHHcCCCCCcCC
Confidence 9999999888 578999999999986
No 19
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=100.00 E-value=1.1e-36 Score=306.76 Aligned_cols=200 Identities=32% Similarity=0.504 Sum_probs=183.0
Q ss_pred eEEEEeCCcccCCCChHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHH-HHHHHHHH
Q 007275 101 TFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIR 179 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~-~~~~g~i~ 179 (609)
++|||+||++++++ +.+++++|+.|+..|.++|||||||++++.++++++++.++.+|.|+|++++++.+ +++.|++|
T Consensus 1 ~~ViK~GGs~l~~~-~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~ 79 (231)
T TIGR00761 1 TIVIKIGGAAISDL-LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVN 79 (231)
T ss_pred CEEEEEChHHHhcc-HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchH
Confidence 58999999999886 89999999999999999999999999999999999999999999999999999987 55577999
Q ss_pred HHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEEEcCC
Q 007275 180 MMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL 259 (609)
Q Consensus 180 ~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi~~~ 259 (609)
..+++. |+++|++ ++++++.+++++++++. ++.|++++|+++.++.+.|+.+|++|+|||++|+
T Consensus 80 ~~i~~~---------L~~~G~~----a~~l~~~~~~~it~~~~---~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~ 143 (231)
T TIGR00761 80 KELVAL---------LNKHGIN----AIGLTGGDGQLFTARSL---DKEDLGYVGEIKKVNKALLEALLKAGYIPVISSL 143 (231)
T ss_pred HHHHHH---------HHhCCCC----cccccCCCCCEEEEEEC---CCccCCcccceEEEcHHHHHHHHHCCCeEEECCC
Confidence 999886 5788988 89999999999999874 4568999999999999999999999999999999
Q ss_pred ccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccCC-C-CccccccCHHHHHHHHH
Q 007275 260 GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE-S-GHLIRFLTLQEADSLIR 317 (609)
Q Consensus 260 ~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~~-~-~~lI~~it~~e~~~l~~ 317 (609)
+.+.+|+++|+|+|.+|++||.+|+||+|+|+||+||++. + +++|++++.+|+++++.
T Consensus 144 ~~~~~g~~~~l~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~~~i~~i~~~e~~~l~~ 203 (231)
T TIGR00761 144 ALTAEGQALNVNADTAAGALAAALGAEKLVLLTDVPGILNGDGQSLISEIPLEEIEQLIE 203 (231)
T ss_pred ccCCCCcEEEeCHHHHHHHHHHHcCCCEEEEEECCCCeecCCCCeeccccCHHHHHHHHH
Confidence 9888999999999999999999999999999999999853 3 45999999998888764
No 20
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=1.6e-33 Score=287.18 Aligned_cols=238 Identities=18% Similarity=0.236 Sum_probs=195.9
Q ss_pred eEEEEeCCcccCCCC---------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHH
Q 007275 101 TFVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~---------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~ 171 (609)
++|||+||++|++++ +++++++|+.++ |+++|||||||++++..++++|+++ |.|++++..|..+
T Consensus 1 ~iVIKiGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~~~~g~~~----g~~~~~~~~l~~~ 74 (252)
T cd04241 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAKEYGLPD----GDGSFSAEGVAET 74 (252)
T ss_pred CEEEEEeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCHHHHHhCCCc----CCCchhhhhHHHH
Confidence 489999999998753 455666666655 9999999999999999999999976 6789999999998
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCC
Q 007275 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (609)
Q Consensus 172 ~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G 251 (609)
...+.++|..+++. |.++|++ ++++++.+. +.+. +|++..++.+.|+.+|+.|
T Consensus 75 ~~~~~~ln~~~~~~---------l~~~g~~----a~~l~~~~~--~~~~------------~g~~~~~~~~~l~~ll~~g 127 (252)
T cd04241 75 HEAMLELNSIVVDA---------LLEAGVP----AVSVPPSSF--FVTE------------NGRIVSFDLEVIKELLDRG 127 (252)
T ss_pred HHHHHHHHHHHHHH---------HHHCCCC----eEEEChHHe--EEec------------CCeeeeecHHHHHHHHhCC
Confidence 77778999998886 4788887 777777652 2221 4788899999999999999
Q ss_pred CeEEEcCC-ccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccCC----CCccccccCHHHHHHHHHhhchhhhhH
Q 007275 252 CLVILSNL-GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEADSLIRQRVKQSEIA 326 (609)
Q Consensus 252 ~IPVi~~~-~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~~----~~~lI~~it~~e~~~l~~~~~~~~~~~ 326 (609)
+|||++++ +.+..++.+|+|+|.+|+.+|.+|+||+|+|+|||||++. ++++|++++.+++++++....
T Consensus 128 ~iPVi~~~~~~~~~~~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P~~~~~i~~i~~~~~~~~~~~~~------ 201 (252)
T cd04241 128 FVPVLHGDVVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPPPDAKLIPEIDVGSLEDILAALG------ 201 (252)
T ss_pred CEEEEcCCeEecCCCCeEEeChHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCeEcceeCccchHHHHHhcC------
Confidence 99999985 4567788999999999999999999999999999999853 599999999988887764210
Q ss_pred hhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHHHHH
Q 007275 327 ANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAA 406 (609)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~a 406 (609)
.++...+| | |.+||++
T Consensus 202 ------------------------------------------~~~~~~tG-G---------------------m~~Kl~a 217 (252)
T cd04241 202 ------------------------------------------SAGTDVTG-G---------------------MAGKIEE 217 (252)
T ss_pred ------------------------------------------cCCccccC-C---------------------HHHHHHH
Confidence 00111234 4 9999999
Q ss_pred HHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccc
Q 007275 407 AAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (609)
Q Consensus 407 a~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i 443 (609)
|..++++|++ +||+||+.++. +.++++++..||.|
T Consensus 218 a~~a~~~Gv~-v~I~~g~~~~~-l~~~l~g~~~GT~i 252 (252)
T cd04241 218 LLELARRGIE-VYIFNGDKPEN-LYRALLGNFIGTRI 252 (252)
T ss_pred HHHHHhcCCe-EEEEeCCCHHH-HHHHHcCCCCceEC
Confidence 9999999997 99999998875 67888888899975
No 21
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-33 Score=286.56 Aligned_cols=238 Identities=20% Similarity=0.261 Sum_probs=193.2
Q ss_pred CeEEEEeCCcccCCCC-------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHH-
Q 007275 100 GTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA- 171 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~- 171 (609)
+++|||+|+|+|+++. +..++++|+.|++.|++||||++| +|..++..+|+++ |.++....+++
T Consensus 7 ~riVvKiGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSG--AiaaG~~~Lg~~~------rp~~l~~kQA~A 78 (369)
T COG0263 7 RRIVVKIGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSG--AIAAGRTRLGLPK------RPKTLAEKQAAA 78 (369)
T ss_pred eEEEEEECcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccc--hhhhChhhcCCCC------CCcchHHHHHHH
Confidence 6999999999998863 688999999999999999999999 8888889999987 45566666665
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCC
Q 007275 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (609)
Q Consensus 172 ~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G 251 (609)
++.|+.++..+.+. |.+||++ +.++.++..| |...++ + ..-.++|..||+.|
T Consensus 79 AVGQ~~Lm~~y~~~---------f~~~g~~--v~QiLLTr~D--~~~r~r--y-------------~Nar~Tl~~Ll~~g 130 (369)
T COG0263 79 AVGQVRLMQLYEEL---------FARYGIK--VGQILLTRDD--FSDRRR--Y-------------LNARNTLSALLELG 130 (369)
T ss_pred HhCHHHHHHHHHHH---------HHhcCCe--eeEEEeehhh--hhhHHH--H-------------HHHHHHHHHHHHCC
Confidence 67788887777775 6889987 3333343333 332221 1 12356899999999
Q ss_pred CeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEeccccc-------CCCCccccccCH--HHHHHHHHhhchh
Q 007275 252 CLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-------DESGHLIRFLTL--QEADSLIRQRVKQ 322 (609)
Q Consensus 252 ~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv-------~~~~~lI~~it~--~e~~~l~~~~~~~ 322 (609)
.|||||+|+..++.|+.++|||.+|+.+|..++||.|++|||+||+ +||+++|++++. .|++.+..
T Consensus 131 vVPIINENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~ag----- 205 (369)
T COG0263 131 VVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAG----- 205 (369)
T ss_pred ceeeecCCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhc-----
Confidence 9999999999999999999999999999999999999999999998 367899988863 24444421
Q ss_pred hhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHH
Q 007275 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 402 (609)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~ 402 (609)
+.++.+||| | |.+
T Consensus 206 ---------------------------------------------gsgs~~GTG-G---------------------M~T 218 (369)
T COG0263 206 ---------------------------------------------GSGSELGTG-G---------------------MRT 218 (369)
T ss_pred ---------------------------------------------CCCCCCCcc-c---------------------HHH
Confidence 246778888 7 999
Q ss_pred HHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccccccc
Q 007275 403 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (609)
Q Consensus 403 kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~d~ 447 (609)
||.||..|+++|++ +.|.+|..++ .+.++..+...||.|.+..
T Consensus 219 Kl~AA~iA~~aG~~-~iI~~g~~~~-~i~~~~~~~~~GT~F~~~~ 261 (369)
T COG0263 219 KLEAAKIATRAGVP-VIIASGSKPD-VILDALEGEAVGTLFEPQA 261 (369)
T ss_pred HHHHHHHHHHcCCc-EEEecCCCcc-hHHHHHhCCCCccEEecCC
Confidence 99999999999998 9999999998 4667778889999998643
No 22
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=100.00 E-value=1.6e-32 Score=283.01 Aligned_cols=257 Identities=21% Similarity=0.234 Sum_probs=202.1
Q ss_pred CeEEEEeCCcccCCCC-----------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHH
Q 007275 100 GTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-----------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l 168 (609)
+++||+||||+|..+. ++..+++|+.|.+.|+++|||||+|||++.++......... -++..+|
T Consensus 3 ~~ivvalgGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~-----~~~~~pl 77 (313)
T PRK12454 3 KRIVIALGGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDV-----GIPPFPL 77 (313)
T ss_pred ceEEEEeChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhccc-----CCCCCcc
Confidence 6899999999996521 46789999999999999999999999999887765443211 1356678
Q ss_pred HHH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcce----eEEEeecCCceee-eeecCcc-c---------------
Q 007275 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLA-AKRKGVV-D--------------- 226 (609)
Q Consensus 169 ~~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~----av~l~~~d~~~l~-ak~~~~~-~--------------- 226 (609)
+.+ ++++|.|.++|+++|.+ .|.++|++.++. .+.++..|..|.+ .|+.|.. .
T Consensus 78 d~~~a~sqG~igy~l~~al~~-----~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~ 152 (313)
T PRK12454 78 DVAGAMTQGWIGYMIQQALRN-----ELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIV 152 (313)
T ss_pred chhhhhhhHHHHHHHHHHHHH-----HHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEE
Confidence 888 89999999999999866 789889876544 4568888888888 5555632 1
Q ss_pred --CcCCcceeeE------eeeCHHHHHHHHhCCCeEEEcCCc----cCCCCcEEE----ecHHHHHHHHHHHcCCCEEEE
Q 007275 227 --GVDYGATGEV------KKVDVTRMRERLDGGCLVILSNLG----YSSSGEVLN----CNTYEVATACALAIEADKLIC 290 (609)
Q Consensus 227 --~~d~g~~G~v------~~v~~~~I~~LL~~G~IPVi~~~~----~~~~ge~~~----id~D~lAa~lA~~L~Ad~LIi 290 (609)
....||...| +.++.+.|+.||+.|.|||+++.+ ++.+|++++ +|+|.+|+++|.+|+||+|||
T Consensus 153 ~~d~g~g~RrvV~SP~P~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIi 232 (313)
T PRK12454 153 KEDAGRGWRRVVPSPDPLGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFII 232 (313)
T ss_pred EEcCCCceEEEeCCCCCccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEE
Confidence 1134666655 469999999999999999999664 455666665 588999999999999999999
Q ss_pred EecccccC-----CCCccccccCHHHHHHHHHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccc
Q 007275 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (609)
Q Consensus 291 LTDvdgv~-----~~~~lI~~it~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (609)
||||||++ +++++|++++.+|++.++.++.
T Consensus 233 LTdVdGVy~~~~~p~~~~i~~It~~e~~~~i~~g~--------------------------------------------- 267 (313)
T PRK12454 233 LTDVEKVYLNYGKPDQKPLDKVTVEEAKKYYEEGH--------------------------------------------- 267 (313)
T ss_pred EeCCceeeCCCCCCCCeEccccCHHHHHHHHhcCC---------------------------------------------
Confidence 99999984 5689999999999988875321
Q ss_pred cccCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccccc
Q 007275 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (609)
Q Consensus 366 ~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~ 445 (609)
|.+| | |.+||++|..+++.|+.++||.+. +. +.+++.++ .||.|.+
T Consensus 268 -------~~~G-g---------------------M~pKv~AA~~~v~~gg~~a~I~~~---~~-i~~aL~G~-~GT~I~~ 313 (313)
T PRK12454 268 -------FKAG-S---------------------MGPKILAAIRFVENGGKRAIIASL---EK-AVEALEGK-TGTRIIP 313 (313)
T ss_pred -------cCCC-C---------------------hHHHHHHHHHHHHcCCCeEEECch---HH-HHHHHCCC-CCeEeCC
Confidence 2234 4 999999999999999889999863 32 55666554 8999853
No 23
>PRK12686 carbamate kinase; Reviewed
Probab=100.00 E-value=1.5e-32 Score=283.74 Aligned_cols=256 Identities=19% Similarity=0.218 Sum_probs=196.2
Q ss_pred CCeEEEEeCCcccCCCC---------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHH-HcCCcccccCCccCCCHHHH
Q 007275 99 GGTFVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLS-ERGHEAKYLGRYRITDSESL 168 (609)
Q Consensus 99 ~k~iVIKlGGsvl~~~~---------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~-~~g~~~~~~~g~rvt~~~~l 168 (609)
.+++|||+|||+|.++. .+..+++|+.|.+.|+++||||||||||+.++. ..+..+.+ .+..+|
T Consensus 2 ~~~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~------~~~~pl 75 (312)
T PRK12686 2 KEKIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNK------VPAMPL 75 (312)
T ss_pred CCEEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccC------CCCCCh
Confidence 47999999999997744 367899999999999999999999999996554 44444322 466789
Q ss_pred HHH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcce----eEEEeecCCceee-eeecCcc------------c----
Q 007275 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLA-AKRKGVV------------D---- 226 (609)
Q Consensus 169 ~~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~----av~l~~~d~~~l~-ak~~~~~------------~---- 226 (609)
+++ ++++|.+.++|+++|.+ +|.+++...++. .+.++..|..|.+ .|+.|+. .
T Consensus 76 ~~~~a~sqg~iGy~~~q~l~~-----~l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~ 150 (312)
T PRK12686 76 DTCVAMSQGMIGYWLQNALNN-----ELTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTF 150 (312)
T ss_pred hhhhhhccchhhHHHHHHHHH-----HHHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcc
Confidence 998 89999999999999866 788777665443 4457777888887 4444531 1
Q ss_pred CcC--CcceeeEee------eCHHHHHHHHhCCCeEEEcCCc----cCCCCcE----EEecHHHHHHHHHHHcCCCEEEE
Q 007275 227 GVD--YGATGEVKK------VDVTRMRERLDGGCLVILSNLG----YSSSGEV----LNCNTYEVATACALAIEADKLIC 290 (609)
Q Consensus 227 ~~d--~g~~G~v~~------v~~~~I~~LL~~G~IPVi~~~~----~~~~ge~----~~id~D~lAa~lA~~L~Ad~LIi 290 (609)
..| .||+++|.+ ++.++|+.||++|+|||+++.+ ..+++.+ .++|+|.+|++||.+|+||+|||
T Consensus 151 ~~d~~~G~rrvV~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIi 230 (312)
T PRK12686 151 KEDAGRGYRRVVPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLII 230 (312)
T ss_pred cccCCCCeEEeeCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEE
Confidence 123 489999987 9999999999999999876321 1123333 36899999999999999999999
Q ss_pred EecccccC-----CCCccccccCHHHHHHHHHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccc
Q 007275 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (609)
Q Consensus 291 LTDvdgv~-----~~~~lI~~it~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (609)
||||||++ +++++|++++.+|++.++.++.
T Consensus 231 LTDVdGVy~~~~~p~ak~I~~I~~~e~~~li~~g~--------------------------------------------- 265 (312)
T PRK12686 231 LTGVENVFINFNKPNQQKLDDITVAEAKQYIAEGQ--------------------------------------------- 265 (312)
T ss_pred EeCchhhccCCCCCCCeECCccCHHHHHHHhhCCC---------------------------------------------
Confidence 99999985 4589999999999888875421
Q ss_pred cccCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHHHHHHcCC-CeEEEeecccccchhhhhhhcCCCccccc
Q 007275 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGV-QRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 366 ~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~a~~~Gv-~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
|.+| | |.+|++||..+++.|+ .+++|.+ ++. +.+++.++ .||.|.
T Consensus 266 -------~~tG-G---------------------M~pKveAA~~av~~g~g~~viI~~---~~~-i~~aL~G~-~GT~I~ 311 (312)
T PRK12686 266 -------FAPG-S---------------------MLPKVEAAIDFVESGEGKKAIITS---LEQ-AKEALAGN-AGTHIT 311 (312)
T ss_pred -------ccCC-C---------------------cHHHHHHHHHHHHhCCCCEEEEeC---chH-HHHHhCCC-CCeEEe
Confidence 2334 4 9999999999998764 4577776 332 44555554 899984
No 24
>PRK12353 putative amino acid kinase; Reviewed
Probab=100.00 E-value=7.4e-32 Score=281.92 Aligned_cols=261 Identities=18% Similarity=0.218 Sum_probs=193.5
Q ss_pred CCeEEEEeCCcccCCCC---------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHH
Q 007275 99 GGTFVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLA 169 (609)
Q Consensus 99 ~k~iVIKlGGsvl~~~~---------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~ 169 (609)
.++|||||||++|++++ +..++++|+.|++.|+++|||||||+|++..+...+..+++.+ ++++.....
T Consensus 2 ~~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~--~~~~~~~~~ 79 (314)
T PRK12353 2 MKKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKN--KVPAMPLDV 79 (314)
T ss_pred CcEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCC--CCCCchhHH
Confidence 58999999999999865 6789999999999999999999999999988776665543322 455554444
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCc----ceeEEEeecCCce-eeeeecCcc------------cCcCCcc
Q 007275 170 AAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSR----WHEVGVSVASGNF-LAAKRKGVV------------DGVDYGA 232 (609)
Q Consensus 170 ~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~----~~av~l~~~d~~~-l~ak~~~~~------------~~~d~g~ 232 (609)
.++..++.++..+++.|++ .|.++|+..+ +..+.++..|..| ..+++.|++ +|.||.+
T Consensus 80 ~~a~~qg~l~~~l~~~~~~-----~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~ 154 (314)
T PRK12353 80 CGAMSQGYIGYHLQNALRN-----ELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKE 154 (314)
T ss_pred HHHHHhHHHHHHHHHHHHH-----HHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeee
Confidence 4578889888877777754 5777877432 2234456666557 567777766 4455544
Q ss_pred -eee-Ee----------eeCHHHHHHHHhCCCeEEEcCCccCC----CCcE----EEecHHHHHHHHHHHcCCCEEEEEe
Q 007275 233 -TGE-VK----------KVDVTRMRERLDGGCLVILSNLGYSS----SGEV----LNCNTYEVATACALAIEADKLICII 292 (609)
Q Consensus 233 -~G~-v~----------~v~~~~I~~LL~~G~IPVi~~~~~~~----~ge~----~~id~D~lAa~lA~~L~Ad~LIiLT 292 (609)
+++ .+ .++.++|+.||+.|+|||+++.+..+ ++.+ .|+|+|++|+++|.+|+||+|||+|
T Consensus 155 ~~~~~~r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lT 234 (314)
T PRK12353 155 DAGRGYRRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILT 234 (314)
T ss_pred cCCceeEeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEe
Confidence 332 33 37999999999999999999764322 2222 3699999999999999999999999
Q ss_pred cccccC-----CCCccccccCHHHHHHHHHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccc
Q 007275 293 DGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATF 367 (609)
Q Consensus 293 Dvdgv~-----~~~~lI~~it~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (609)
||||++ +++++|++++.++++.++..+
T Consensus 235 dvdGVy~~~~~~~a~~i~~i~~~e~~~~~~~~------------------------------------------------ 266 (314)
T PRK12353 235 AVDKVYINFGKPNQKKLDEVTVSEAEKYIEEG------------------------------------------------ 266 (314)
T ss_pred CCccccCCCCCCCCeECcCcCHHHHHHHHhcC------------------------------------------------
Confidence 999985 358999999988888776431
Q ss_pred cCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHHHHH-HcCCCeEEEeecccccchhhhhhhcCCCcccccc
Q 007275 368 NNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVC-RRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (609)
Q Consensus 368 ~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~a~-~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~ 445 (609)
.+++| | |.+||++|..++ +.+..+++|++ ++. +.+++.++ .||.|.+
T Consensus 267 ----~~~tG-G---------------------M~~Kl~aA~~a~~~~~g~~v~I~~---~~~-i~~~l~g~-~GT~i~~ 314 (314)
T PRK12353 267 ----QFAPG-S---------------------MLPKVEAAISFVESRPGRKAIITS---LEK-AKEALEGK-AGTVIVK 314 (314)
T ss_pred ----CcCCC-C---------------------cHHHHHHHHHHHHHcCCCEEEECC---chH-HHHHhCCC-CCeEecC
Confidence 12244 5 999999999999 44444599997 343 44666655 8999853
No 25
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=100.00 E-value=1.2e-31 Score=278.33 Aligned_cols=255 Identities=19% Similarity=0.212 Sum_probs=190.8
Q ss_pred CeEEEEeCCcccCCC--C---------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHH
Q 007275 100 GTFVVIISGEIVSSP--Y---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (609)
Q Consensus 100 k~iVIKlGGsvl~~~--~---------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l 168 (609)
|+||||+|||+|..+ . ++.++++|+.|.+.|++||||||||||++.....+...+ ..++..+|
T Consensus 1 ~riViklGgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~------~~~~~~p~ 74 (310)
T TIGR00746 1 KRVVVALGGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAAD------SEVPAMPL 74 (310)
T ss_pred CeEEEEECHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhcccccc------ccCCCCcc
Confidence 689999999999742 1 467999999999999999999999999997654432221 12344567
Q ss_pred HHH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcc----eeEEEeecCCceeeeeec-Cc-c----------------
Q 007275 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRW----HEVGVSVASGNFLAAKRK-GV-V---------------- 225 (609)
Q Consensus 169 ~~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~----~av~l~~~d~~~l~ak~~-~~-~---------------- 225 (609)
+++ ++.||.|++.++++|++ .|.++|+..++ .++.++..|..|.+..+. |. +
T Consensus 75 ~~~~A~~qg~lg~~~~~~l~~-----~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~ 149 (310)
T TIGR00746 75 DVLGAMSQGMIGYMLQQALNN-----ELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIV 149 (310)
T ss_pred hHHHHhhHHHHHHHHHHHHHH-----HHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeE
Confidence 887 89999999999998754 56688866433 355677777778774443 31 1
Q ss_pred -cCcCCcceeeE------eeeCHHHHHHHHhCCCeEEEcCCccC----CC----CcEEEecHHHHHHHHHHHcCCCEEEE
Q 007275 226 -DGVDYGATGEV------KKVDVTRMRERLDGGCLVILSNLGYS----SS----GEVLNCNTYEVATACALAIEADKLIC 290 (609)
Q Consensus 226 -~~~d~g~~G~v------~~v~~~~I~~LL~~G~IPVi~~~~~~----~~----ge~~~id~D~lAa~lA~~L~Ad~LIi 290 (609)
+...+||...| +.++.++|+.||+.|.|+|.++.+.. .+ |...|+|+|.+|+++|.+|+||+|||
T Consensus 150 ~~d~~~~~rrvv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIi 229 (310)
T TIGR00746 150 KEDAGRGWRRVVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVI 229 (310)
T ss_pred eecCCCcceEeecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEE
Confidence 11234565544 36899999999999985444433221 12 33358999999999999999999999
Q ss_pred EecccccC-----CCCccccccCHHHHHHHHHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccc
Q 007275 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (609)
Q Consensus 291 LTDvdgv~-----~~~~lI~~it~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (609)
||||||++ +++++|++++.+|++.++..+
T Consensus 230 LTDVdGVy~~~~~p~a~~i~~it~~e~~~~~~~g---------------------------------------------- 263 (310)
T TIGR00746 230 LTDVDAVYINYGKPDEKALREVTVEELEDYYKAG---------------------------------------------- 263 (310)
T ss_pred EeCCCceeCCCCCCCCcCCcCcCHHHHHHHHhcC----------------------------------------------
Confidence 99999984 568999999998888876321
Q ss_pred cccCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 366 ~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
.|++| | |.+||+||..+++.|+.++||++ ++ .+.+++.++ .||.|.
T Consensus 264 ------~~~tG-g---------------------M~~Kl~AA~~~~~~g~~~v~I~~---~~-~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 264 ------HFAAG-S---------------------MGPKVEAAIEFVESGGKRAIITS---LE-NAVEALEGK-AGTRVT 309 (310)
T ss_pred ------CcCCC-C---------------------cHHHHHHHHHHHHhCCCeEEEec---hH-HHHHHHCCC-CCcEEe
Confidence 13344 4 99999999999999888899997 33 366777777 899985
No 26
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.97 E-value=3.2e-31 Score=269.10 Aligned_cols=237 Identities=30% Similarity=0.399 Sum_probs=205.8
Q ss_pred EEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHHHHHHHHHHHH
Q 007275 103 VVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMM 181 (609)
Q Consensus 103 VIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~g~i~~~ 181 (609)
||||||++++++. +++++++|+.+++.|+++|||||||++++..+.+++....+..+.++++.+.+..++...+..+..
T Consensus 1 ViKiGGs~l~~~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
T cd02115 1 VIKFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLL 80 (248)
T ss_pred CEeeCccccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 7999999998744 899999999999899999999999999999999999887777788888888777777777888888
Q ss_pred HHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEEEcCCcc
Q 007275 182 IEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGY 261 (609)
Q Consensus 182 l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi~~~~~ 261 (609)
+++. |.++|++ +..+++.+..+... +++++|.+..++.+.|+++|+.|.|||+++++.
T Consensus 81 ~~~~---------l~~~gi~----a~~~~~~~~~~~~~---------~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~ 138 (248)
T cd02115 81 IAAA---------LEQHGIK----AVPLDLTQAGFASP---------NQGHVGKITKVSTDRLKSLLENGILPILSGFGG 138 (248)
T ss_pred HHHH---------HHhCCCC----eEEEchHHcCeEeC---------CCCCcccceeeCHHHHHHHHhCCcEEEecCeEe
Confidence 8876 5788987 77887776555432 568899999999999999999999999999876
Q ss_pred CC---CCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHHhhchhhhhHhhhhh
Q 007275 262 SS---SGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVK 331 (609)
Q Consensus 262 ~~---~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~~~~~~~~~~~~~~~ 331 (609)
.+ .+++.++++|.+|+.+|.+|+||+|+|+|||+|++ +++++|++++.+|++++...
T Consensus 139 ~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~------------- 205 (248)
T cd02115 139 TDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYA------------- 205 (248)
T ss_pred ccCCceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHc-------------
Confidence 65 77889999999999999999999999999999984 24899999999988887532
Q ss_pred hhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHHHHH
Q 007275 332 AVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVC 411 (609)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~a~ 411 (609)
| + |..|++++..+.
T Consensus 206 --------------------------------------------g-~---------------------~~~k~~a~~~~~ 219 (248)
T cd02115 206 --------------------------------------------G-A---------------------MVLKPKAADPAA 219 (248)
T ss_pred --------------------------------------------C-C---------------------CccCHHHHHHHH
Confidence 2 3 788899999999
Q ss_pred HcCCCeEEEeecccccchhhhhhhcCCCcccc
Q 007275 412 RRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (609)
Q Consensus 412 ~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i 443 (609)
+.|+ +++|+++..++.| ++|++++.||+|
T Consensus 220 ~~~~-~v~I~~~~~~~~l--~~~~~~~~GT~I 248 (248)
T cd02115 220 RAGI-PVRIANTENPGAL--ALFTPDGGGTLI 248 (248)
T ss_pred HcCC-cEEEEeCCCcccc--cccCCCCCCCCC
Confidence 9996 5999999999875 999999999986
No 27
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.97 E-value=2.4e-30 Score=257.08 Aligned_cols=258 Identities=19% Similarity=0.204 Sum_probs=204.2
Q ss_pred CeEEEEeCCcccCCCC-----------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHH
Q 007275 100 GTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-----------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l 168 (609)
++|||.||||+|..+. +...+++|+.|.+.|+++||+||+|||++.++......... .-.+...|
T Consensus 1 ~~iVvALGGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~----~~~p~~PL 76 (312)
T COG0549 1 KRIVVALGGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSE----KGVPAYPL 76 (312)
T ss_pred CeEEEEecchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccc----cCCCCccH
Confidence 4799999999996531 56789999999999999999999999999988766553221 12456788
Q ss_pred HHH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCc----ceeEEEeecCCceee-eeecCcc-----------------
Q 007275 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSR----WHEVGVSVASGNFLA-AKRKGVV----------------- 225 (609)
Q Consensus 169 ~~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~----~~av~l~~~d~~~l~-ak~~~~~----------------- 225 (609)
+.+ ++++|.|.++|+++|.+ .|.+++++.+ ++.+.++..|+.|.+ .|+.|++
T Consensus 77 d~~~AmsQG~IGy~l~qal~n-----~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~ 151 (312)
T COG0549 77 DVLVAMSQGMIGYMLQQALRN-----ELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVF 151 (312)
T ss_pred HHHhHhhhhHHHHHHHHHHHH-----HHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEE
Confidence 887 89999999999999977 6788886543 345678889999999 5556643
Q ss_pred -cCcCCcceeeE------eeeCHHHHHHHHhCCCeEEEcCCccC-----C---CCcEEEecHHHHHHHHHHHcCCCEEEE
Q 007275 226 -DGVDYGATGEV------KKVDVTRMRERLDGGCLVILSNLGYS-----S---SGEVLNCNTYEVATACALAIEADKLIC 290 (609)
Q Consensus 226 -~~~d~g~~G~v------~~v~~~~I~~LL~~G~IPVi~~~~~~-----~---~ge~~~id~D~lAa~lA~~L~Ad~LIi 290 (609)
+..+.||..+| +.++.++|+.|+++|.+||.++-+-. . .|--.+||.|..|++||.+++||.|||
T Consensus 152 keD~~rG~RRVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liI 231 (312)
T COG0549 152 KEDAGRGYRRVVPSPKPVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLII 231 (312)
T ss_pred EecCCCCeeEecCCCCCccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEE
Confidence 12345566654 56899999999999999999864321 1 244569999999999999999999999
Q ss_pred EecccccC-----CCCccccccCHHHHHHHHHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccc
Q 007275 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (609)
Q Consensus 291 LTDvdgv~-----~~~~lI~~it~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (609)
|||||.++ |+.+.|+.++.+|+++++.++
T Consensus 232 LTdVd~Vy~n~gkp~q~~L~~v~~~e~~~yl~eg---------------------------------------------- 265 (312)
T COG0549 232 LTDVDAVYVNFGKPNQQALDRVTVDEMEKYLAEG---------------------------------------------- 265 (312)
T ss_pred EeccchheecCCCccchhhcccCHHHHHHHHhcC----------------------------------------------
Confidence 99999773 788999999999999998662
Q ss_pred cccCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccccc
Q 007275 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (609)
Q Consensus 366 ~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~ 445 (609)
.|+.|| |.||++||+.+++++-+++.|.+- +. +.+.+ ....||.|.+
T Consensus 266 -------------------~Fa~GS---------M~PKVeAai~Fv~~~gk~A~ItsL--e~--~~~~l-~g~~GT~I~~ 312 (312)
T COG0549 266 -------------------QFAAGS---------MGPKVEAAISFVENTGKPAIITSL--EN--AEAAL-EGKAGTVIVP 312 (312)
T ss_pred -------------------CCCCCC---------ccHHHHHHHHHHHcCCCceEECcH--HH--HHHHh-ccCCCcEecC
Confidence 378888 999999999999999888888762 22 34444 4678998853
No 28
>PRK09411 carbamate kinase; Reviewed
Probab=99.97 E-value=5.2e-30 Score=261.58 Aligned_cols=245 Identities=22% Similarity=0.204 Sum_probs=190.2
Q ss_pred CeEEEEeCCcccCCCC-----------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHH
Q 007275 100 GTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-----------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l 168 (609)
+++||.||||+|..+. .+..++.|+.|.+. |++||+||+|||++.++.+...... .++.+|
T Consensus 2 ~~iVvAlGGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~~~-------~~~~pl 73 (297)
T PRK09411 2 KTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAWKE-------VEPYPL 73 (297)
T ss_pred CeEEEEcCchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhhcC-------CCCCCc
Confidence 5899999999996521 45678999999887 9999999999999988776544321 266788
Q ss_pred HHH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCc----ceeEEEeecCCceee-eeecCcc------------cC---
Q 007275 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSR----WHEVGVSVASGNFLA-AKRKGVV------------DG--- 227 (609)
Q Consensus 169 ~~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~----~~av~l~~~d~~~l~-ak~~~~~------------~~--- 227 (609)
+++ ++++|.|.++|+++|. ..+...+ ++++.++..|..|.+ .|+.|.+ ++
T Consensus 74 d~~~a~sqG~iGy~l~q~l~---------~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~ 144 (297)
T PRK09411 74 DVLVAESQGMIGYMLAQSLS---------AQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQM 144 (297)
T ss_pred hhhhhhcccHHHHHHHHHHH---------HcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEE
Confidence 998 8999999999999874 3454433 345578888888888 5555532 11
Q ss_pred -cCCcceeeE-------eeeCHHHHHHHHhCCCeEEEc-----CCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecc
Q 007275 228 -VDYGATGEV-------KKVDVTRMRERLDGGCLVILS-----NLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDG 294 (609)
Q Consensus 228 -~d~g~~G~v-------~~v~~~~I~~LL~~G~IPVi~-----~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDv 294 (609)
.|-.+.++| +.++.+.|+.||++|+|||++ |+..+.+|...|+|+|.+|+.||.+|+||+|||||||
T Consensus 145 ~~dg~g~rrVVpSP~P~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDV 224 (297)
T PRK09411 145 KRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDA 224 (297)
T ss_pred EecCCceEEEccCCCCcceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCc
Confidence 333456666 789999999999999999987 4444445778999999999999999999999999999
Q ss_pred cccC-----CCCccccccCHHHHHHHHHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccC
Q 007275 295 PILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNN 369 (609)
Q Consensus 295 dgv~-----~~~~lI~~it~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (609)
||++ +++++|++++.+|++.++..
T Consensus 225 dGV~~n~~~p~~~~I~~it~~e~~~~~~~--------------------------------------------------- 253 (297)
T PRK09411 225 DAVYENWGTPQQRAIRHATPDELAPFAKA--------------------------------------------------- 253 (297)
T ss_pred hhhccCCCCCCCcCCCCcCHHHHHHhccC---------------------------------------------------
Confidence 9884 46789999999888766421
Q ss_pred CcccCCCCCCccccccccccccchhhcccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 370 GVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 370 ~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
+| | |.+|++||..+++.|.++++|.+ ... +.+++.++ .||.|.
T Consensus 254 -----~G-g---------------------M~pKVeAA~~~v~~~g~~a~I~~---l~~-~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 254 -----DG-A---------------------MGPKVTAVSGYVRSRGKPAWIGA---LSR-IEETLAGE-AGTCIS 296 (297)
T ss_pred -----CC-C---------------------cHHHHHHHHHHHHhCCCeEEECC---hhH-HHHHHCCC-CCeEEe
Confidence 23 4 99999999999998888888865 222 44555554 799884
No 29
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.97 E-value=1.9e-29 Score=260.69 Aligned_cols=253 Identities=19% Similarity=0.209 Sum_probs=192.3
Q ss_pred eEEEEeCCcccCCCC-----------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHH
Q 007275 101 TFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLA 169 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~-----------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~ 169 (609)
++|||||||+|..+. ++.++++|+.|.+.|+++|||||||||++.++....... ..++...|+
T Consensus 1 rivialgGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~------~~~~~~pld 74 (308)
T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAA------EKVPAYPLD 74 (308)
T ss_pred CEEEEecHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhcc------ccCCCCCcc
Confidence 589999999996411 578899999999999999999999999999887755432 124556788
Q ss_pred HH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcce----eEEEeecCCceee-eeecCcc-c----------------
Q 007275 170 AA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLA-AKRKGVV-D---------------- 226 (609)
Q Consensus 170 ~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~----av~l~~~d~~~l~-ak~~~~~-~---------------- 226 (609)
.+ ++.+|.+.+.|+.+|.+ .|.++|++.++. .+.+...|..|.+ .|+.|.. +
T Consensus 75 ~~~a~~~G~ig~~~~~al~~-----~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~ 149 (308)
T cd04235 75 VCGAMSQGMIGYMLQQALDN-----ELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFK 149 (308)
T ss_pred hhcchhhHHHHHHHHHHHHH-----HHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEE
Confidence 87 88999999999988866 788888876443 3457777787877 4445532 1
Q ss_pred -CcCCcceeeE------eeeCHHHHHHHHhCCCeEEEcCC-----ccCCCCcEE----EecHHHHHHHHHHHcCCCEEEE
Q 007275 227 -GVDYGATGEV------KKVDVTRMRERLDGGCLVILSNL-----GYSSSGEVL----NCNTYEVATACALAIEADKLIC 290 (609)
Q Consensus 227 -~~d~g~~G~v------~~v~~~~I~~LL~~G~IPVi~~~-----~~~~~ge~~----~id~D~lAa~lA~~L~Ad~LIi 290 (609)
....||...| +.++.+.|+.||++|+|||+++. ..+ .+.++ ++|+|.+|+++|.+|+||+|++
T Consensus 150 ~d~~~g~rrvV~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~-~~~~~gveaVid~D~~AallA~~l~Ad~Lii 228 (308)
T cd04235 150 EDAGRGYRRVVPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVRE-GGGLKGVEAVIDKDLASALLAEEINADLLVI 228 (308)
T ss_pred EeCCCCceeeeCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEc-CCceeeeeeccCccHHHHHHHHHcCCCEEEE
Confidence 0113455444 46899999999999999999944 232 24333 5799999999999999999999
Q ss_pred EecccccC-----CCCccccccCHHHHHHHHHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccc
Q 007275 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (609)
Q Consensus 291 LTDvdgv~-----~~~~lI~~it~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (609)
+|||||++ +++++|++++.+|+.+++..+
T Consensus 229 lTdVdGVy~~~~~pda~~i~~Is~~e~~~l~~~g---------------------------------------------- 262 (308)
T cd04235 229 LTDVDNVYINFGKPNQKALEQVTVEELEKYIEEG---------------------------------------------- 262 (308)
T ss_pred EecCCeEECCCCCCCCeEcCCcCHHHHHHHHhcC----------------------------------------------
Confidence 99999984 458999999999888876432
Q ss_pred cccCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 366 ~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
.|.+| | |.+|+++|..+++.|..+++|.+ .+. +.+++.++ .||.|.
T Consensus 263 ------~~~tG-G---------------------M~pKv~aA~~~a~~gg~~v~I~~---~~~-i~~aL~G~-~GT~I~ 308 (308)
T cd04235 263 ------QFAPG-S---------------------MGPKVEAAIRFVESGGKKAIITS---LEN-AEAALEGK-AGTVIV 308 (308)
T ss_pred ------ccccC-C---------------------cHHHHHHHHHHHHhCCCeEEECC---HHH-HHHHHCCC-CCeEEC
Confidence 12334 4 99999999999998877788877 333 45555555 799873
No 30
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.97 E-value=1.4e-29 Score=269.21 Aligned_cols=238 Identities=19% Similarity=0.262 Sum_probs=179.9
Q ss_pred CCeEEEEeCCcccCCCC-------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHH
Q 007275 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (609)
Q Consensus 99 ~k~iVIKlGGsvl~~~~-------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~ 171 (609)
.+++|||+||++|++++ +..++++|+.|++.|++|||||||+++++. .+++.. ++.+++..+++.
T Consensus 5 ~kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~--~~l~~~----~~~~~~~~qala-- 76 (368)
T PRK13402 5 WKRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGY--HKLGFI----DRPSVPEKQAMA-- 76 (368)
T ss_pred CcEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCc--cccCCC----CCCCccHHHHHH--
Confidence 37999999999998642 578999999999999999999999887776 455543 222455443333
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCC
Q 007275 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (609)
Q Consensus 172 ~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G 251 (609)
.+.+..++..+... |+++|++ +.++...+.+|...++ | ..-.++|+.||+.|
T Consensus 77 avGq~~l~~~~~~~---------f~~~g~~----~aqvLlT~~d~~~~~~--------y-------~n~~~~l~~LL~~g 128 (368)
T PRK13402 77 AAGQGLLMATWSKL---------FLSHGFP----AAQLLLTHGDLRDRER--------Y-------INIRNTINVLLERG 128 (368)
T ss_pred HhhHHHHHHHHHHH---------HHHCCCe----EEEEEEecchhhhHHH--------H-------HHHHHHHHHHHHCC
Confidence 33444455666664 6889987 5666555554422111 1 01136899999999
Q ss_pred CeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCH--HHHHHHHHhhchh
Q 007275 252 CLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QEADSLIRQRVKQ 322 (609)
Q Consensus 252 ~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~--~e~~~l~~~~~~~ 322 (609)
+|||+++++...+.++.++|+|.+|+++|.+++||.|+|+|||||++ |++++|++|+. +++..+...
T Consensus 129 ~IPIinenD~v~~~el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~---- 204 (368)
T PRK13402 129 ILPIINENDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGG---- 204 (368)
T ss_pred cEEEEeCCCcEeecccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcc----
Confidence 99999998877777888999999999999999999999999999984 36899999985 444443211
Q ss_pred hhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHH
Q 007275 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 402 (609)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~ 402 (609)
.++.+++| | |.+
T Consensus 205 ----------------------------------------------~~s~~gtG-G---------------------M~~ 216 (368)
T PRK13402 205 ----------------------------------------------AGSNVGTG-G---------------------MRT 216 (368)
T ss_pred ----------------------------------------------cccCcCcC-C---------------------chH
Confidence 13446666 6 999
Q ss_pred HHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccccc
Q 007275 403 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (609)
Q Consensus 403 kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~d 446 (609)
||+||..|.++|++ ++|+++..++ .|.+++.++..||+|.+.
T Consensus 217 Kl~Aa~~a~~~gi~-v~I~~g~~~~-~l~~~l~g~~~GT~i~~~ 258 (368)
T PRK13402 217 KIQAAKIAMSHGIE-TFIGNGFTAD-IFNQLLKGQNPGTYFTPE 258 (368)
T ss_pred HHHHHHHHHHcCCc-EEEEcCCCch-HHHHHhcCCCCceEEecC
Confidence 99999999999998 8999999888 567788888899999764
No 31
>PRK12354 carbamate kinase; Reviewed
Probab=99.97 E-value=2e-29 Score=259.43 Aligned_cols=250 Identities=20% Similarity=0.191 Sum_probs=185.3
Q ss_pred eEEEEeCCcccCCCC-----------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHH
Q 007275 101 TFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLA 169 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~-----------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~ 169 (609)
++|||||||+|.++. ++..++.|+.|.+ |+++||+||+|||++.++.+..... ..+..+|+
T Consensus 2 ~iVialGGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~-------~~~~~pl~ 73 (307)
T PRK12354 2 RIVVALGGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYK-------DVTPYPLD 73 (307)
T ss_pred eEEEEeccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhc-------CCCCCCcc
Confidence 799999999998732 3467888998887 9999999999999997655433221 12556778
Q ss_pred HH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceee-eeecCcc----------------cCcCCc
Q 007275 170 AA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLA-AKRKGVV----------------DGVDYG 231 (609)
Q Consensus 170 ~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~-ak~~~~~----------------~~~d~g 231 (609)
.+ ++.+|.+.+++++.|.+ .|.+..+.+-+.++.++..|..|-. .|+.|.+ -..|-.
T Consensus 74 ~~~a~sqg~iGy~l~q~l~~-----~l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~dg~ 148 (307)
T PRK12354 74 VLGAETEGMIGYMLEQELGN-----LLPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPDGD 148 (307)
T ss_pred hhcccccchHHHHHHHHHHH-----HhcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeecCC
Confidence 77 78999999999998765 4544445555566778888888877 4444421 112222
Q ss_pred ceeeEe-------eeCHHHHHHHHhCCCeEEEc-----CCccCCCCcEE----EecHHHHHHHHHHHcCCCEEEEEeccc
Q 007275 232 ATGEVK-------KVDVTRMRERLDGGCLVILS-----NLGYSSSGEVL----NCNTYEVATACALAIEADKLICIIDGP 295 (609)
Q Consensus 232 ~~G~v~-------~v~~~~I~~LL~~G~IPVi~-----~~~~~~~ge~~----~id~D~lAa~lA~~L~Ad~LIiLTDvd 295 (609)
+.++|. .++.+.|+.||++|+|||++ |+..+.+++.+ ++|+|.+|++||.+|+||+|+||||||
T Consensus 149 g~rrVv~SP~P~~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVd 228 (307)
T PRK12354 149 YFRRVVPSPRPKRIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVD 228 (307)
T ss_pred ceEEEecCCCCcceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCc
Confidence 334443 69999999999999998886 54444434443 479999999999999999999999999
Q ss_pred ccC-----CCCccccccCHHHHHHHHHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCC
Q 007275 296 ILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNG 370 (609)
Q Consensus 296 gv~-----~~~~lI~~it~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (609)
|++ |++++|++++.+|++++ .
T Consensus 229 GVy~~~~~p~~k~i~~it~~e~~~~--~---------------------------------------------------- 254 (307)
T PRK12354 229 AVYLDWGKPTQRAIAQATPDELREL--G---------------------------------------------------- 254 (307)
T ss_pred ceecCCCCCCCeECCCCCHHHHHhh--C----------------------------------------------------
Confidence 984 45789999998887665 1
Q ss_pred cccCCCCCCccccccccccccchhhcccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccccc
Q 007275 371 VGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (609)
Q Consensus 371 ~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~d 446 (609)
|.+| | |.+|++||..+++.|.++++|.+ .. -+.+++.++ .||.|.++
T Consensus 255 --f~~G-g---------------------M~pKV~AA~~~~~~gg~~viI~~---~~-~l~~al~G~-~GT~I~~~ 301 (307)
T PRK12354 255 --FAAG-S---------------------MGPKVEAACEFVRATGKIAGIGS---LE-DIQAILAGE-AGTRISPE 301 (307)
T ss_pred --CCcC-C---------------------hHHHHHHHHHHHHhCCCEEEECC---HH-HHHHHHCCC-CceEEecC
Confidence 2234 4 99999999999988887788854 22 356777654 89999764
No 32
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.96 E-value=8.2e-29 Score=265.26 Aligned_cols=237 Identities=20% Similarity=0.263 Sum_probs=181.5
Q ss_pred CCeEEEEeCCcccCCCC-------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHH
Q 007275 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (609)
Q Consensus 99 ~k~iVIKlGGsvl~~~~-------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~ 171 (609)
.+++|||+||++|+++. +.+++++|+.+++.|+++|||||| +++..+..+++..++ ......+++
T Consensus 8 ~~~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sG--ai~~g~~~l~l~~~~------~~~~~~qa~ 79 (372)
T PRK05429 8 ARRIVVKVGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSG--AVAAGRERLGLPERP------KTLAEKQAA 79 (372)
T ss_pred CCEEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEccc--HhhhhHhhcCCCCCC------CchHHHHHH
Confidence 36899999999998632 678999999999999999999998 466677788876432 122233333
Q ss_pred -HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeC-HHHHHHHHh
Q 007275 172 -MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLD 249 (609)
Q Consensus 172 -~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~-~~~I~~LL~ 249 (609)
...+..++..+... |+++|++ +.++...+.+|....+ .++ .++|+.||+
T Consensus 80 aavGq~~L~~~~~~~---------l~~~gi~----~~qil~t~~d~~~~~~----------------~ln~~~~i~~Ll~ 130 (372)
T PRK05429 80 AAVGQSRLMQAYEEL---------FARYGIT----VAQILLTRDDLEDRER----------------YLNARNTLRTLLE 130 (372)
T ss_pred HHHhHHHHHHHHHHH---------HHHCCCC----EEEEEeehhHhhhhhH----------------hhhHHHHHHHHHH
Confidence 34455555556554 6899987 6666555555532111 122 478999999
Q ss_pred CCCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCH--HHHHHHHHhhc
Q 007275 250 GGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QEADSLIRQRV 320 (609)
Q Consensus 250 ~G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~--~e~~~l~~~~~ 320 (609)
.|+|||+++++.....++.++|+|.+|++||.+|+||+|+|+|||||++ |++++|++++. +|++.++..
T Consensus 131 ~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~-- 208 (372)
T PRK05429 131 LGVVPIINENDTVATDEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGG-- 208 (372)
T ss_pred CCCEEEEcCCCccceecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcC--
Confidence 9999999998877666778899999999999999999999999999984 35899999986 456665422
Q ss_pred hhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCC
Q 007275 321 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 400 (609)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m 400 (609)
.++.+++| | |
T Consensus 209 ------------------------------------------------~~~~~gtG-G---------------------M 218 (372)
T PRK05429 209 ------------------------------------------------AGSGLGTG-G---------------------M 218 (372)
T ss_pred ------------------------------------------------CCCCcCcC-C---------------------c
Confidence 12234555 5 9
Q ss_pred HHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccccc
Q 007275 401 LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (609)
Q Consensus 401 ~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~d 446 (609)
.+||+||..|.+.|++ ++|+||+.++ .+.++++++..||.|.+.
T Consensus 219 ~~Kl~aa~~a~~~Gi~-v~I~~g~~~~-~l~~~l~g~~~GT~i~~~ 262 (372)
T PRK05429 219 ATKLEAARIATRAGIP-VVIASGREPD-VLLRLLAGEAVGTLFLPQ 262 (372)
T ss_pred HHHHHHHHHHHHCCCe-EEEEcCCCcc-HHHHHhcCCCCCEEEeeC
Confidence 9999999999999997 9999999988 577888888899999864
No 33
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.96 E-value=6.8e-29 Score=256.36 Aligned_cols=244 Identities=18% Similarity=0.187 Sum_probs=171.6
Q ss_pred CCeEEEEeCCcccCCCC--------hHHHHHHHHHHHhCCCeEE-EEECChHHHhHHHHHcCC-ccc----ccCCcc---
Q 007275 99 GGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFV-LVPGTHVQIDKLLSERGH-EAK----YLGRYR--- 161 (609)
Q Consensus 99 ~k~iVIKlGGsvl~~~~--------l~~l~~~Ia~L~~~G~~vV-LVhGgG~~i~~~l~~~g~-~~~----~~~g~r--- 161 (609)
-++||||+|||+|++++ +..++++|+.|++.|++|| ++||++.+.+..+...+. ... ..++.+
T Consensus 8 ~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~~~~~ 87 (284)
T cd04256 8 AKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQLKDM 87 (284)
T ss_pred CCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhcccccccCC
Confidence 37999999999998753 5789999999999999999 555555555555544322 000 001111
Q ss_pred CCCHHHHHHH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeC
Q 007275 162 ITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD 240 (609)
Q Consensus 162 vt~~~~l~~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~ 240 (609)
..+....+++ .+.+..+...+.+. |.+++++ +.++.....+|-..+. ....
T Consensus 88 ~~~~~~~qa~aa~gq~~L~~~y~~~---------f~~~~~~----~~q~llt~~d~~~~~~---------------~~~~ 139 (284)
T cd04256 88 PQMELDGRACAAVGQSGLMALYEAM---------FTQYGIT----VAQVLVTKPDFYDEQT---------------RRNL 139 (284)
T ss_pred cchhHHHHHHHHcccHHHHHHHHHH---------HHHcCCc----HHHeeeeccccccHHH---------------HHHH
Confidence 2222233443 45566666666654 6788886 3344344444433221 2245
Q ss_pred HHHHHHHHhCCCeEEEcCCccCCC-------CcE--EEecHHHHHHHHHHHcCCCEEEEEecccccC------CCCcccc
Q 007275 241 VTRMRERLDGGCLVILSNLGYSSS-------GEV--LNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIR 305 (609)
Q Consensus 241 ~~~I~~LL~~G~IPVi~~~~~~~~-------ge~--~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~------~~~~lI~ 305 (609)
.++|+.||+.|+|||+++++...+ ++. .++|+|.+|+++|.+++||+|||+|||||++ |++++|+
T Consensus 140 ~~~l~~lL~~g~iPVi~~nD~v~~~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~a~~I~ 219 (284)
T cd04256 140 NGTLEELLRLNIIPIINTNDAVSPPPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIH 219 (284)
T ss_pred HHHHHHHHHCCCEEEEeCCCcccccccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCCCCCCeEcc
Confidence 679999999999999998765432 222 4599999999999999999999999999984 3589999
Q ss_pred ccCHHHHHHHHHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCcccccc
Q 007275 306 FLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQG 385 (609)
Q Consensus 306 ~it~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~ 385 (609)
+++..+.+.+... ..+.+++| |
T Consensus 220 ~i~~~~~~~~~~~--------------------------------------------------~~s~~gtG-G------- 241 (284)
T cd04256 220 TFYPGDQQSITFG--------------------------------------------------TKSRVGTG-G------- 241 (284)
T ss_pred cccHhHHHHhhcc--------------------------------------------------cccCcccC-C-------
Confidence 9997665443211 12234456 5
Q ss_pred ccccccchhhcccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 386 FAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 386 ~~~g~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
|.+||+||..|.+.|++ ++|++|..++. +.+++.++..||.|.
T Consensus 242 --------------M~~Kl~Aa~~a~~~Gi~-v~I~~G~~~~~-i~~~l~G~~~GT~~~ 284 (284)
T cd04256 242 --------------MEAKVKAALWALQGGTS-VVITNGMAGDV-ITKILEGKKVGTFFT 284 (284)
T ss_pred --------------cHHHHHHHHHHHHCCCe-EEEEcCCCccH-HHHHHcCCCCCEEeC
Confidence 99999999999999997 99999999985 677788888999883
No 34
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.96 E-value=1.8e-28 Score=250.15 Aligned_cols=234 Identities=15% Similarity=0.154 Sum_probs=169.5
Q ss_pred CCeEEEEeCCcccCCCC------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHH-
Q 007275 99 GGTFVVIISGEIVSSPY------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA- 171 (609)
Q Consensus 99 ~k~iVIKlGGsvl~~~~------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~- 171 (609)
-+++|||+|||+|++++ +..++++|+.|++ +++|||||||+ +......+++... .....+++
T Consensus 8 ~~riVIKlG~Svit~~~~~~~~~~~~l~~~i~~l~~-~~~vilVssGa--va~g~~~~~~~~~--------~~~~~qa~a 76 (264)
T PTZ00489 8 VKRIVVKVGSSILVDNQEIAAHRIEALCRFIADLQT-KYEVILVTSGA--VAAGYTKKEMDKS--------YVPNKQALA 76 (264)
T ss_pred CCEEEEEeccceeeCCCCcCHHHHHHHHHHHHHHhc-CCeEEEEecCh--HhcChhhcCCCcc--------ccHHHHHHH
Confidence 47899999999998654 5788999999986 79999999886 4433445555431 11223333
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCC
Q 007275 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (609)
Q Consensus 172 ~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G 251 (609)
.+.|..++..+... |.++|+. +.++.....+|-..++ .....++|++||+.|
T Consensus 77 aiGq~~L~~~y~~~---------f~~~~~~----~aqiLlt~~d~~~~~~---------------~~n~~~~l~~lL~~g 128 (264)
T PTZ00489 77 SMGQPLLMHMYYTE---------LQKHGIL----CAQMLLAAYDLDSRKR---------------TINAHNTIEVLISHK 128 (264)
T ss_pred HhCHHHHHHHHHHH---------HHhCCCe----EEEeeeeccccccchh---------------hHHHHHHHHHHHHCC
Confidence 45566687777775 5889987 4444433322222111 123467899999999
Q ss_pred CeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCcc---ccccCHHHHHHHHHhhch
Q 007275 252 CLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHL---IRFLTLQEADSLIRQRVK 321 (609)
Q Consensus 252 ~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~l---I~~it~~e~~~l~~~~~~ 321 (609)
+|||+++++..+..|+.|+|+|.+|+.+|.+++||+|||+|||||++ |++++ |++++.+++.... .
T Consensus 129 ~VPIinend~~~~~e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~--~-- 204 (264)
T PTZ00489 129 VIPIINENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEA--T-- 204 (264)
T ss_pred CEEEECCCCCcccceeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhc--C--
Confidence 99999999988888999999999999999999999999999999984 23555 6677765542211 0
Q ss_pred hhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCH
Q 007275 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (609)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~ 401 (609)
..+.+++| | |.
T Consensus 205 -----------------------------------------------~~~~~~tG-G---------------------M~ 215 (264)
T PTZ00489 205 -----------------------------------------------PNNRFATG-G---------------------IV 215 (264)
T ss_pred -----------------------------------------------cCCCcccC-C---------------------hH
Confidence 01233455 5 99
Q ss_pred HHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcC--CCccccccc
Q 007275 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRD--GMGTMVASD 446 (609)
Q Consensus 402 ~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~--g~GT~i~~d 446 (609)
+||+||..|.+.|++ ++|++|..++. +..++.++ ..||.|.+.
T Consensus 216 ~Kl~aa~~a~~~Gi~-v~I~~g~~~~~-i~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 216 TKLQAAQFLLERGGK-MYLSSGFHLEK-ARDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred HHHHHHHHHHHCCCC-EEEEeCCCchH-HHHHHcCCCCCCceEEeec
Confidence 999999999999997 99999999985 55666543 379999763
No 35
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.96 E-value=1.2e-28 Score=249.24 Aligned_cols=192 Identities=33% Similarity=0.443 Sum_probs=165.2
Q ss_pred CeEEEEeCCcccCCC--ChHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHH-HHHHH
Q 007275 100 GTFVVIISGEIVSSP--YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAG 176 (609)
Q Consensus 100 k~iVIKlGGsvl~~~--~l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~-~~~~g 176 (609)
|++||||||++++++ .+.+++++|+.+.+.|+++|||||+|++++.+++.+++.+++.++.|+|+....... +.+.+
T Consensus 1 k~~ViK~GGs~l~~~~~~~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 80 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKDEELRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPKFVDGSRVTDIETGLIITMAAAA 80 (242)
T ss_dssp SEEEEEE-HHGHSSHSHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTSEETHHCHBHHHHHHHHHHHHHH
T ss_pred CeEEEEECchhhCCchHHHHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCcccchhhhhhhhhhhHHHHHHHhh
Confidence 689999999999986 589999999999999999999999999999999999999999888899998888776 66677
Q ss_pred HHHH-----HHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCC
Q 007275 177 GIRM-----MIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (609)
Q Consensus 177 ~i~~-----~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G 251 (609)
.+|. .+... +..++.. .+++...+.++....+.. ..++.+.|+.+|++|
T Consensus 81 ~l~~~~~~~~i~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~l~~~ 134 (242)
T PF00696_consen 81 ELNRDALLDEIVSA---------GERLGAH----AVGLSLSDGGISAAKRDA-------------REVDKEAIRELLEQG 134 (242)
T ss_dssp HHHHHHHHHHHHHH---------HHHCTHH----EEEHHHTGGTEEEEEEES-------------SEEHHHHHHHHHHTT
T ss_pred ccccchhHHHHHHh---------hhhhhHH----HHhhhhhcccchhhhhhh-------------hhhHHHHHHHHHHCC
Confidence 7777 66654 4666654 778878777666644310 157899999999999
Q ss_pred CeEEEcCCc-cCCCCcE---EEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHH
Q 007275 252 CLVILSNLG-YSSSGEV---LNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (609)
Q Consensus 252 ~IPVi~~~~-~~~~ge~---~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~ 317 (609)
.|||++|.. .+.+|++ .++++|.+|+.||.+|+|++|+|+|||||++ +++++|++|+.+|++++..
T Consensus 135 ~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~ 211 (242)
T PF00696_consen 135 IIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELAS 211 (242)
T ss_dssp SEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHH
T ss_pred CEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHh
Confidence 999999986 7888988 9999999999999999999999999999984 4789999999999999874
No 36
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.96 E-value=2.3e-28 Score=249.18 Aligned_cols=234 Identities=19% Similarity=0.237 Sum_probs=172.0
Q ss_pred eEEEEeCCcccCCCC-------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHH-H
Q 007275 101 TFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-M 172 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~-------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~-~ 172 (609)
++|||+||+++++++ +.+++++|+.++..|+++||||||+... ....+++...+ ......+++ .
T Consensus 1 ~iViK~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~--g~~~~~~~~~~------~~~~~~~~~~~ 72 (251)
T cd04242 1 RIVVKVGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAA--GRQRLGLEKRP------KTLPEKQALAA 72 (251)
T ss_pred CEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhh--ChhhhccCcCC------CchhHHHHHHH
Confidence 589999999998864 6788999999999999999999874332 23455543321 111223332 2
Q ss_pred HHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCC
Q 007275 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGC 252 (609)
Q Consensus 173 ~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~ 252 (609)
..+..++..+.. .|+++|++ +.++...+.+|..++. .....+.|+.||+.|+
T Consensus 73 ~Gq~~l~~~~~~---------~l~~~Gi~----~~q~l~t~~~~~~~~~---------------~~~~~~~i~~ll~~g~ 124 (251)
T cd04242 73 VGQSLLMALYEQ---------LFAQYGIK----VAQILLTRDDFEDRKR---------------YLNARNTLETLLELGV 124 (251)
T ss_pred HhHHHHHHHHHH---------HHHHcCCe----EEEEEEehhHhcchHH---------------HHHHHHHHHHHHHCCC
Confidence 333333334444 47889987 5566566655543321 0112578999999999
Q ss_pred eEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccC--HHHHHHHHHhhchhh
Q 007275 253 LVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLT--LQEADSLIRQRVKQS 323 (609)
Q Consensus 253 IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it--~~e~~~l~~~~~~~~ 323 (609)
|||+++++...++++.++|+|.+|+++|.+|+||+|+|+|||||++ |++++|++++ .+|+..+....
T Consensus 125 iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~---- 200 (251)
T cd04242 125 IPIINENDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGS---- 200 (251)
T ss_pred EEEEcCCCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhccc----
Confidence 9999987766666677899999999999999999999999999984 3589999999 77777664110
Q ss_pred hhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHH
Q 007275 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (609)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~k 403 (609)
.+.+++| | |.+|
T Consensus 201 ----------------------------------------------~~~~~tg-g---------------------m~~K 212 (251)
T cd04242 201 ----------------------------------------------GSSVGTG-G---------------------MRTK 212 (251)
T ss_pred ----------------------------------------------CcCcccC-C---------------------cHHH
Confidence 1223445 5 9999
Q ss_pred HHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 404 l~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
|++|..+.+.|++ ++|+||..++ .+.+++++++.||+|.
T Consensus 213 l~a~~~a~~~gi~-v~I~~g~~~~-~i~~~l~g~~~GT~i~ 251 (251)
T cd04242 213 LKAARIATEAGIP-VVIANGRKPD-VLLDILAGEAVGTLFL 251 (251)
T ss_pred HHHHHHHHHCCCc-EEEEcCCCCC-HHHHHHcCCCCCeEeC
Confidence 9999999999998 9999999998 4777888888999873
No 37
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.96 E-value=5.6e-28 Score=247.85 Aligned_cols=236 Identities=19% Similarity=0.211 Sum_probs=169.2
Q ss_pred CCeEEEEeCCcccCCCC-------hHHHHHHHHHHHhCCCeEEEE-ECChHHHhHHHHHcCCcccccCCccCCCHHHHHH
Q 007275 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLV-PGTHVQIDKLLSERGHEAKYLGRYRITDSESLAA 170 (609)
Q Consensus 99 ~k~iVIKlGGsvl~~~~-------l~~l~~~Ia~L~~~G~~vVLV-hGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~ 170 (609)
.+++|||+||++|++++ +.+++++|+.++..|+++||| ||++.+.+..+ ++.. +..+...+++
T Consensus 9 ~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l---~~~~------~~~~~~~~~a 79 (266)
T PRK12314 9 AKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKL---KLDK------RPTSLAEKQA 79 (266)
T ss_pred CCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceee---cccc------CCCCHHHHHH
Confidence 46899999999998542 688999999999999999987 66665555433 2221 1123344555
Q ss_pred H-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHh
Q 007275 171 A-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLD 249 (609)
Q Consensus 171 ~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~ 249 (609)
+ ...+..++..+.. .|+++|++ +.++...+.+|-..++ .....++|++||+
T Consensus 80 ~aa~Gq~~l~~~~~~---------~~~~~g~~----~~q~llT~~~~~~~~~---------------~~~~~~~l~~ll~ 131 (266)
T PRK12314 80 LAAVGQPELMSLYSK---------FFAEYGIV----VAQILLTRDDFDSPKS---------------RANVKNTFESLLE 131 (266)
T ss_pred HHHHhHHHHHHHHHH---------HHHHcCCe----EEEEEEecccccchHH---------------HHHHHHHHHHHHH
Confidence 4 4555555555555 46889986 3344444444432221 2345679999999
Q ss_pred CCCeEEEcCCccCCCCc--EEEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCH--HHHHHHHHh
Q 007275 250 GGCLVILSNLGYSSSGE--VLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QEADSLIRQ 318 (609)
Q Consensus 250 ~G~IPVi~~~~~~~~ge--~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~--~e~~~l~~~ 318 (609)
.|+|||+++++.....+ ..++|+|.+|++||.+|+||+|+|+|||||++ |++++|++|+. .+..++...
T Consensus 132 ~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~ 211 (266)
T PRK12314 132 LGILPIVNENDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGG 211 (266)
T ss_pred CCCEEEEcCCCCeeeccccceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhcc
Confidence 99999999876544333 34779999999999999999999999999984 35888888864 232222110
Q ss_pred hchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhccc
Q 007275 319 RVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLN 398 (609)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~ 398 (609)
.++.+++| |
T Consensus 212 --------------------------------------------------~~~~~~tG-G-------------------- 220 (266)
T PRK12314 212 --------------------------------------------------AGSKFGTG-G-------------------- 220 (266)
T ss_pred --------------------------------------------------CCCCcccC-c--------------------
Confidence 12234555 5
Q ss_pred CCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccccc
Q 007275 399 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (609)
Q Consensus 399 ~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~ 445 (609)
|.+|++||..|.+.|++ ++|+||+.++. +.++++++..||.|.+
T Consensus 221 -M~~Kl~aa~~a~~~gv~-v~I~~g~~~~~-i~~~l~g~~~GT~i~~ 264 (266)
T PRK12314 221 -MVTKLKAAKFLMEAGIK-MVLANGFNPSD-ILDFLEGESIGTLFAP 264 (266)
T ss_pred -hHHHHHHHHHHHHCCCe-EEEEcCCCchH-HHHHHcCCCCceEEcc
Confidence 99999999999999998 99999999986 6778888889999975
No 38
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=237.97 Aligned_cols=244 Identities=20% Similarity=0.212 Sum_probs=181.8
Q ss_pred CeEEEEeCCcccCCCC--------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCH-----H
Q 007275 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDS-----E 166 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~--------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~-----~ 166 (609)
++||||+|+++++++. +..++++++.|+..|++|+||++|+.+.+ +.++..+.......|-+-. .
T Consensus 10 ~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G--~qrLr~~~~~s~s~r~~l~~~~~l~ 87 (285)
T KOG1154|consen 10 YRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFG--RQRLRQELLPSSSMRQTLKPQSELA 87 (285)
T ss_pred eEEEEEecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhhh--HHHhhhhhccchhHHHhhCCccchh
Confidence 6899999999998854 46789999999999999999999965554 4555554333222222111 1
Q ss_pred HHHHH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHH
Q 007275 167 SLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMR 245 (609)
Q Consensus 167 ~l~~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~ 245 (609)
..+++ ++.++.++..++.. |.++|+. ..++...+.+|..-..+ +.-..+|+
T Consensus 88 e~rA~AAvGQ~~Lmalye~l---------F~Qy~~~----iAQvLvT~~Di~d~~~r---------------~Nl~~Ti~ 139 (285)
T KOG1154|consen 88 EKRACAAVGQSGLMALYETL---------FTQYGIT----IAQVLVTRNDILDEQQR---------------KNLQNTIS 139 (285)
T ss_pred hHHHHHHhCcchHHHHHHHH---------HHHhccc----hheeeecCcchhhHHHH---------------HHHHHHHH
Confidence 22222 56677777777664 6899987 44555555555542221 23356899
Q ss_pred HHHhCCCeEEEcCCccCCCCcEEEec---HHHHHHHHHHHcCCCEEEEEecccccCC---CC---ccccccCHHHHHHHH
Q 007275 246 ERLDGGCLVILSNLGYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPILDE---SG---HLIRFLTLQEADSLI 316 (609)
Q Consensus 246 ~LL~~G~IPVi~~~~~~~~ge~~~id---~D~lAa~lA~~L~Ad~LIiLTDvdgv~~---~~---~lI~~it~~e~~~l~ 316 (609)
+||..|+|||+|+|+..+.-++.|.| ||.+|+.+|..++||.||+||||||++. +. ++|+..+..
T Consensus 140 eLL~m~viPIvNeNDavs~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~~~~li~~~~~~------ 213 (285)
T KOG1154|consen 140 ELLSMNVIPIVNENDAVSPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDADPSKLIHTFSPG------ 213 (285)
T ss_pred HHHhCCceeeecCCCccCCcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCCcceeeeeeccC------
Confidence 99999999999999988877888888 9999999999999999999999999963 33 333332211
Q ss_pred HhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhc
Q 007275 317 RQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSR 396 (609)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~ 396 (609)
| ....-+|+.++.+|+| |
T Consensus 214 ---------------------------~----------------~~v~~tfG~~SkvGtG-G------------------ 231 (285)
T KOG1154|consen 214 ---------------------------D----------------PQVSTTFGSKSKVGTG-G------------------ 231 (285)
T ss_pred ---------------------------C----------------CCCccccCccCccCcC-c------------------
Confidence 0 0123478899999999 8
Q ss_pred ccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccccc
Q 007275 397 LNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (609)
Q Consensus 397 ~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~d 446 (609)
|.+||.||..|..+||. |.|.+|..+.+ +..++.+..+||.|...
T Consensus 232 ---M~tKv~AA~~A~~~Gv~-viI~~g~~p~~-I~~iv~g~kvgt~f~~~ 276 (285)
T KOG1154|consen 232 ---METKVKAAVNALNAGVS-VIITNGDAPEN-ITDIVEGKKVGTFFEQL 276 (285)
T ss_pred ---chhhHHHHHHHhcCCce-EEEeCCCChHH-HHHHHhhhhhhhhhhhc
Confidence 99999999999999998 89999999984 77888888899998753
No 39
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.96 E-value=5.6e-28 Score=257.88 Aligned_cols=235 Identities=16% Similarity=0.210 Sum_probs=172.6
Q ss_pred CeEEEEeCCcccCCCC-------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHH-
Q 007275 100 GTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA- 171 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~- 171 (609)
+++|||+||++|++++ +..++++|+.++..|+++|||||||. ...+..++++..+ .+....+++
T Consensus 1 ~riVIKiGgs~l~~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~--~~g~~~lg~~~~~------~~l~~~qa~a 72 (363)
T TIGR01027 1 QRIVVKVGSSSLTGSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGAI--AAGFEALGLPERP------KTLAEKQALA 72 (363)
T ss_pred CeEEEEeccceEeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcHH--hcCccccCCCCCc------cchHHHHHHH
Confidence 4799999999999854 67899999999999999999999974 4455566665422 222233333
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeee-CHHHHHHHHhC
Q 007275 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKV-DVTRMRERLDG 250 (609)
Q Consensus 172 ~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v-~~~~I~~LL~~ 250 (609)
...+..++..+... |.++|++ +.++...+.+|...+ +.. ..++|+.||+.
T Consensus 73 a~Gq~~l~~~~~~~---------l~~~Gi~----~aqillt~~d~~~~~----------------~~lna~~~i~~Ll~~ 123 (363)
T TIGR01027 73 AVGQVRLMQLYEQL---------FSQYGIK----VAQILLTRADFSDRE----------------RYLNARNTLEALLEL 123 (363)
T ss_pred HhChHHHHHHHHHH---------HHHcCCe----EEEEEEeccchhhHH----------------HHHHHHHHHHHHHhC
Confidence 34444555555554 6889987 455544444333211 112 23789999999
Q ss_pred CCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHH--HHHHHHHhhch
Q 007275 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQ--EADSLIRQRVK 321 (609)
Q Consensus 251 G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~--e~~~l~~~~~~ 321 (609)
|+|||+++++.....++.++|+|.+|+++|.+++||+|+|+|||||++ |++++|++++.. +++.+ ..+
T Consensus 124 g~iPVi~end~v~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i-~~~-- 200 (363)
T TIGR01027 124 GVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGV-AGD-- 200 (363)
T ss_pred CCEEEEeCCCceeeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHh-hcC--
Confidence 999999987766555666889999999999999999999999999984 357999999753 22222 111
Q ss_pred hhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCH
Q 007275 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (609)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~ 401 (609)
.++++++| | |.
T Consensus 201 -----------------------------------------------~~~~~gtG-G---------------------M~ 211 (363)
T TIGR01027 201 -----------------------------------------------SGSSVGTG-G---------------------MR 211 (363)
T ss_pred -----------------------------------------------CCcCcCcC-C---------------------ch
Confidence 12335555 5 99
Q ss_pred HHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccccc
Q 007275 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (609)
Q Consensus 402 ~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~ 445 (609)
+||+||..|.+.|++ ++|+|+..++ .|.++++++..||.|.+
T Consensus 212 ~Kl~Aa~~a~~~gi~-v~I~~g~~~~-~l~~~l~g~~~GT~i~~ 253 (363)
T TIGR01027 212 TKLQAADLATRAGVP-VIIASGSKPE-KIADALEGAPVGTLFHA 253 (363)
T ss_pred HHHHHHHHHHHCCCe-EEEEeCCCcc-HHHHHhcCCCCcEEEee
Confidence 999999999999998 9999999887 46777888889999976
No 40
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.94 E-value=1.5e-25 Score=226.99 Aligned_cols=188 Identities=17% Similarity=0.225 Sum_probs=153.0
Q ss_pred EEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEEC-ChHHHhHHHHHcCCcccccCCccCCCHHHHHHHHHHHHHHH
Q 007275 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPG-THVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIR 179 (609)
Q Consensus 102 iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhG-gG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~g~i~ 179 (609)
+|||+||+++.++. +++++++|+.+++.|+++||||| +|+.++.+++..+....+ .+.+.++++......++
T Consensus 2 iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~------~~~~~~~~i~~~Ge~~~ 75 (239)
T cd04246 2 IVQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPR------PSPRELDMLLSTGEQIS 75 (239)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccC------CCHHHHHHHHHHhHHHH
Confidence 79999999998755 79999999999999999999999 688889888877765432 25666776633322445
Q ss_pred HH-HHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEEEcC
Q 007275 180 MM-IEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN 258 (609)
Q Consensus 180 ~~-l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi~~ 258 (609)
.. +.+. |+++|++ ++++++.+..+++..+ ++ .|++..++.+.|++++++|.|||+++
T Consensus 76 ~~~~~~~---------l~~~g~~----a~~l~~~~~~l~~~~~--------~~-~~~~~~~~~~~l~~ll~~g~ipVi~g 133 (239)
T cd04246 76 AALLAMA---------LNRLGIK----AISLTGWQAGILTDDH--------HG-NARIIDIDPKRILEALEEGDVVVVAG 133 (239)
T ss_pred HHHHHHH---------HHhCCCC----eEEeccccCCEEecCC--------CC-ceeechhhHHHHHHHHhcCCEEEEcC
Confidence 44 4443 6899988 8899888877776543 21 46778889999999999999999999
Q ss_pred C-ccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHH
Q 007275 259 L-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (609)
Q Consensus 259 ~-~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~ 317 (609)
. +.+.+|+++++ |+|.+|+.+|.+|+||+|+|+|||||++ +++++|++++.+|++++..
T Consensus 134 ~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~ 203 (239)
T cd04246 134 FQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMAS 203 (239)
T ss_pred ccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHh
Confidence 6 66778889988 8999999999999999999999999984 3689999999999888753
No 41
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.94 E-value=1.5e-25 Score=226.84 Aligned_cols=190 Identities=17% Similarity=0.208 Sum_probs=152.2
Q ss_pred eEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECC-hHHHhHHHHHcCCcccccCCccCCCHHHHHHHHHHHHHH
Q 007275 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGI 178 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGg-G~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~g~i 178 (609)
.+|||+||+++.+++ +++++++|+.+++.|+++|||||| |+.+.++++...... +.++...++++......+
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~------~~~~~~~~~~i~a~Ge~~ 74 (239)
T cd04261 1 LIVQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEIS------PRPPARELDVLLSTGEQV 74 (239)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhc------cCCCHHHHHHHHHHHHHH
Confidence 389999999998755 799999999999999999999997 667776665422111 345677777764444466
Q ss_pred HHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEEEcC
Q 007275 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN 258 (609)
Q Consensus 179 ~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi~~ 258 (609)
+..+... .|+++|++ ++++++.+..+++..+ + ..|++..++.+.|+.+++.|.|||+++
T Consensus 75 ~~~l~~~--------~l~~~g~~----a~~l~~~~~~l~~~~~--------~-~~~~i~~~~~~~l~~ll~~~~ipVi~G 133 (239)
T cd04261 75 SIALLAM--------ALNRLGIK----AISLTGWQAGILTDGH--------H-GKARIIDIDPDRIRELLEEGDVVIVAG 133 (239)
T ss_pred HHHHHHH--------HHHhCCCC----eEEechhhCCEEecCC--------C-CcceechhhHHHHHHHHHcCCeEEEcC
Confidence 6664333 36899988 8899988877776543 2 157777788999999999999999999
Q ss_pred C-ccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHH
Q 007275 259 L-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (609)
Q Consensus 259 ~-~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~ 317 (609)
. +.+.+|+++++ |+|.+|+.+|.+|+||+|+++|||||++ +++++|++++.+|++++..
T Consensus 134 ~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~ 203 (239)
T cd04261 134 FQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMAS 203 (239)
T ss_pred ccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHh
Confidence 7 66788999999 9999999999999999999999999984 2689999999999888753
No 42
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.94 E-value=5.9e-25 Score=223.15 Aligned_cols=190 Identities=18% Similarity=0.232 Sum_probs=155.1
Q ss_pred eEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEE-----CChHHHhHHHHHcCCcccccCCccCCCHHHHHHHHHH
Q 007275 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVP-----GTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEA 174 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVh-----GgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~ 174 (609)
.+|||+||+++++++ +++++++|+.+.+.|+++|||| |||+++...+..++... +.|+|+ +.++.+ .+
T Consensus 1 ~~ViK~GGs~l~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~----~~~~t~-~~~~~~-~~ 74 (244)
T cd04260 1 IIVQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAE----NSDISP-RELDLL-MS 74 (244)
T ss_pred CEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhh----cCCCCH-HHHHHH-HH
Confidence 379999999998876 7899999999999999888887 78888888766655332 446655 456666 44
Q ss_pred HHHHHH--HHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCC
Q 007275 175 AGGIRM--MIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGC 252 (609)
Q Consensus 175 ~g~i~~--~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~ 252 (609)
.|+.+. .+++. |+++|++ ++++++.+..++++.. ++ .|++..++.+.|+.+|+.|+
T Consensus 75 ~Ge~~~~~~~~~~---------l~~~Gi~----a~~l~~~~~~lit~~~--------~~-~~~v~~~~~~~l~~ll~~g~ 132 (244)
T cd04260 75 CGEIISAVVLTST---------LRAQGLK----AVALTGAQAGILTDDN--------YS-NAKIIKVNPKKILSALKEGD 132 (244)
T ss_pred HhHHHHHHHHHHH---------HHhCCCC----eEEechHHcCEEecCC--------CC-ceeeeccCHHHHHHHHhCCC
Confidence 666554 35554 6899988 8999999888877553 22 46778889999999999999
Q ss_pred eEEEcCC-ccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHHh
Q 007275 253 LVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQ 318 (609)
Q Consensus 253 IPVi~~~-~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~~ 318 (609)
|||+++. +.+.+|+++++ ++|.+|+.+|.+|+||+|+|+|||||++ +++++|++|+.+|+++++..
T Consensus 133 VPVv~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~ 209 (244)
T cd04260 133 VVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQ 209 (244)
T ss_pred EEEecCCcccCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHc
Confidence 9999996 67788999998 6999999999999999999999999984 36899999999999998754
No 43
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.93 E-value=5.2e-25 Score=253.76 Aligned_cols=247 Identities=17% Similarity=0.163 Sum_probs=171.2
Q ss_pred CCeEEEEeCCcccCCCC-------hHHHHHHHHHHHhCCCeEEEEECC-hHHHhHHHHHcCCccc-ccCCccCCCHHHHH
Q 007275 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAK-YLGRYRITDSESLA 169 (609)
Q Consensus 99 ~k~iVIKlGGsvl~~~~-------l~~l~~~Ia~L~~~G~~vVLVhGg-G~~i~~~l~~~g~~~~-~~~g~rvt~~~~l~ 169 (609)
.++||||+||++|++++ +.+++++|+.|++.|++||||.+| +.+.+..+...+.... +.+-.+.++...++
T Consensus 7 ~~~iViKiGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~~~q 86 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQPELDGK 86 (715)
T ss_pred CCEEEEEeCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCchHHHH
Confidence 47999999999998854 688999999999999999996665 3333333332222110 00001233344444
Q ss_pred HH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHH
Q 007275 170 AA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERL 248 (609)
Q Consensus 170 ~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL 248 (609)
++ .+.+..+...+.. .|.++++. ..++...+.+|-..++ .....++|+.||
T Consensus 87 a~aa~gq~~L~~~y~~---------~f~~~~i~----~aQ~Llt~~d~~~~~~---------------~~~~~~~l~~lL 138 (715)
T TIGR01092 87 ACAAVGQSGLMALYET---------MFTQLDIT----AAQILVTDLDFRDEQF---------------RRQLNETVHELL 138 (715)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHcCCe----eEEEEechhhcccHHH---------------HHHHHHHHHHHH
Confidence 44 4555555444444 36778876 4444444433332221 123567999999
Q ss_pred hCCCeEEEcCCccCCCCc-------EEEecHHHHHHHHHHHcCCCEEEEEecccccC------CCCccccccCHHHHHHH
Q 007275 249 DGGCLVILSNLGYSSSGE-------VLNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFLTLQEADSL 315 (609)
Q Consensus 249 ~~G~IPVi~~~~~~~~ge-------~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~------~~~~lI~~it~~e~~~l 315 (609)
+.|+|||+++++...+.+ -+|+|+|.+|++||.+|+||+|+|+|||||++ +++++|++++..+.+..
T Consensus 139 ~~g~iPVin~nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~ 218 (715)
T TIGR01092 139 RMNVVPVVNENDAVSTRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGE 218 (715)
T ss_pred HCCCEEEEcCCCcccccccccccccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCCCCCCeEeeeecccchhhh
Confidence 999999999877654332 24999999999999999999999999999985 35889998886544322
Q ss_pred HHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhh
Q 007275 316 IRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLS 395 (609)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~ 395 (609)
+.. +..+.+++| |
T Consensus 219 i~~-------------------------------------------------~~~~~~~tG-G----------------- 231 (715)
T TIGR01092 219 ITF-------------------------------------------------GTKSRLGRG-G----------------- 231 (715)
T ss_pred hcc-------------------------------------------------CcccccCCC-C-----------------
Confidence 211 112234455 5
Q ss_pred cccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccccc
Q 007275 396 RLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (609)
Q Consensus 396 ~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~d 446 (609)
|.+||+||..|.+.|++ ++|++|..++. |.++++++..||.|.++
T Consensus 232 ----M~~Kl~aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~~~~~ 276 (715)
T TIGR01092 232 ----MTAKVKAAVWAAYGGTP-VIIASGTAPKN-ITKVVEGKKVGTLFHED 276 (715)
T ss_pred ----chHHHHHHHHHHHCCCe-EEEeCCCCcch-HHHHhcCCCCceEeccc
Confidence 99999999999999997 99999998885 67777888899999864
No 44
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.93 E-value=1.6e-24 Score=211.72 Aligned_cols=237 Identities=16% Similarity=0.186 Sum_probs=168.2
Q ss_pred EEEEeCCcccCCCC---------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHHH
Q 007275 102 FVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM 172 (609)
Q Consensus 102 iVIKlGGsvl~~~~---------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~ 172 (609)
+|+|||||+||+++ +.+++.+|+. ..-.++|||||||+|.|..+++++++ ...+ ...+.....++
T Consensus 3 ~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~Ak~~~~~-~~~~---~~s~~G~~~~~ 76 (252)
T COG1608 3 IILKLGGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAAKEFGLE-GLKN---YLSPLGFSLTH 76 (252)
T ss_pred EEEEecceeeecCCCcchhhHHHHHHHHHHHhc--CCcccEEEEecCccccCHHHHHhCcc-cccc---ccCccchHHHH
Confidence 89999999999976 3455555553 33347899999999999999999993 2111 12333444557
Q ss_pred HHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCC
Q 007275 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGC 252 (609)
Q Consensus 173 ~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~ 252 (609)
.++.+++..+++. |.++|+. ++...+.+ |.+ +.|++..-..+.|+.+|+.|+
T Consensus 77 ~am~~L~~~V~~~---------l~~~Gv~----av~~~P~s--~~~-------------~~gr~~~~~l~~i~~~l~~gf 128 (252)
T COG1608 77 LAMLELNSIVVDA---------LLDAGVR----AVSVVPIS--FST-------------FNGRILYTYLEAIKDALEKGF 128 (252)
T ss_pred HHHHHHHHHHHHH---------HHhcCCc----cccccCcc--eee-------------cCCceeechHHHHHHHHHcCC
Confidence 7888999999886 4788887 33322222 111 123333345779999999999
Q ss_pred eEEEcCCcc-CCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccCC-CCccccccC-HHHHHHHHHhhchhhhhHhhh
Q 007275 253 LVILSNLGY-SSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE-SGHLIRFLT-LQEADSLIRQRVKQSEIAANY 329 (609)
Q Consensus 253 IPVi~~~~~-~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~~-~~~lI~~it-~~e~~~l~~~~~~~~~~~~~~ 329 (609)
|||+.+... +++..+.++++|+++.+||+.|++|+++|+|||||+++ +...++++. .++++.+..-+.
T Consensus 129 vPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~g--------- 199 (252)
T COG1608 129 VPVLYGDVVPDDDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGG--------- 199 (252)
T ss_pred EeeeecceEEcCCCceEEEeccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcC---------
Confidence 999998654 44557889999999999999999999999999999853 444444443 345544321110
Q ss_pred hhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHHH
Q 007275 330 VKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAF 409 (609)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~ 409 (609)
+ + + -..+|| |..||+++..
T Consensus 200 -----------------------------------------s----~-~------~DVTGG---------i~~Kl~~~~~ 218 (252)
T COG1608 200 -----------------------------------------S----G-G------TDVTGG---------IAKKLEALLE 218 (252)
T ss_pred -----------------------------------------c----C-c------ccchhh---------HHHHHHHHHH
Confidence 0 0 0 012233 9999999999
Q ss_pred HHHcCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 410 VCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 410 a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
..+.|.. |+++||..+++| .+.+.++.+||.|.
T Consensus 219 ~~~~~~~-vyi~ng~~~~ni-~~~l~G~~vGT~I~ 251 (252)
T COG1608 219 IARYGKE-VYIFNGNKPENI-YRALRGENVGTRID 251 (252)
T ss_pred HHhcCce-EEEECCCCHHHH-HHHhcCCCCceEec
Confidence 9999988 999999999974 55557899999985
No 45
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.92 E-value=2.3e-24 Score=247.99 Aligned_cols=245 Identities=16% Similarity=0.133 Sum_probs=173.4
Q ss_pred CCeEEEEeCCcccCCCC-------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCccccc----CCccCCCHHH
Q 007275 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYL----GRYRITDSES 167 (609)
Q Consensus 99 ~k~iVIKlGGsvl~~~~-------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~----~g~rvt~~~~ 167 (609)
.|++|||+||++|++++ +.+++++|+.|++.|++||||+|| +++.....+++..... +-.+.+....
T Consensus 15 ~~~iViK~G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSg--a~~~g~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (718)
T PLN02418 15 VKRVVIKVGTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSG--AVGVGRQRLRYRRLVNSSFADLQKPQMELD 92 (718)
T ss_pred CCEEEEEeCCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecc--hHHHHHHHHhhhhhhhcccccCCCCcchHH
Confidence 47999999999998754 688999999999999999999999 4444444454432100 0001111112
Q ss_pred HHHH-HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHH
Q 007275 168 LAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRE 246 (609)
Q Consensus 168 l~~~-~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~ 246 (609)
.+++ ...+..++..+.. .|+++|++ +.++...+.+|-..+. .....++|+.
T Consensus 93 ~qa~aa~Gq~~l~~~~~~---------~f~~~g~~----~~qillT~~~~~~~~~---------------~~~~~~~l~~ 144 (718)
T PLN02418 93 GKACAAVGQSELMALYDT---------LFSQLDVT----ASQLLVTDSDFRDPDF---------------RKQLSETVES 144 (718)
T ss_pred HHHHHHhhHHHHHHHHHH---------HHHHcCCe----EEEEEecHhHhcchhH---------------hHhHHHHHHH
Confidence 2232 4444444444444 47889986 5555555544443221 2345679999
Q ss_pred HHhCCCeEEEcCCccCCCCc-------EEEecHHHHHHHHHHHcCCCEEEEEecccccC------CCCccccccCHHHHH
Q 007275 247 RLDGGCLVILSNLGYSSSGE-------VLNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFLTLQEAD 313 (609)
Q Consensus 247 LL~~G~IPVi~~~~~~~~ge-------~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~------~~~~lI~~it~~e~~ 313 (609)
||+.|+|||+++++...+.+ ..|+|+|.+|+++|.+++||+|+|+|||||++ +++++|++++..+.+
T Consensus 145 ll~~g~iPVv~~nd~v~~~~~~~~~~~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~~~~a~~i~~i~~~~~~ 224 (718)
T PLN02418 145 LLDLRVIPIFNENDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLIHTYIKEKHQ 224 (718)
T ss_pred HHHCCCEEEEcCCCCccccccccccccCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCCCCCceEcceecccchh
Confidence 99999999999986654323 27899999999999999999999999999984 347888888765443
Q ss_pred HHHHhhchhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccch
Q 007275 314 SLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQER 393 (609)
Q Consensus 314 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~ 393 (609)
..+..+ ..+..++| |
T Consensus 225 ~~i~~~-------------------------------------------------~~s~~~tG-G--------------- 239 (718)
T PLN02418 225 DEITFG-------------------------------------------------EKSRVGRG-G--------------- 239 (718)
T ss_pred hhhhcc-------------------------------------------------cccccCCC-C---------------
Confidence 322111 12233455 5
Q ss_pred hhcccCCHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccccc
Q 007275 394 LSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (609)
Q Consensus 394 ~~~~~~m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~d 446 (609)
|.+||+||..+.++|++ ++|+||+.++. |.++++++..||.|.++
T Consensus 240 ------M~~Kl~Aa~~a~~~Gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~ 284 (718)
T PLN02418 240 ------MTAKVKAAVNAASAGIP-VVITSGYALDN-IRKVLRGERVGTLFHQD 284 (718)
T ss_pred ------cHHHHHHHHHHHHCCCc-EEEeCCCCcch-HHHHhcCCCCceEeccc
Confidence 99999999999999997 99999999985 67788888899999875
No 46
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.91 E-value=3.4e-23 Score=208.11 Aligned_cols=176 Identities=20% Similarity=0.232 Sum_probs=139.4
Q ss_pred eEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHHHHHHH-HH
Q 007275 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAG-GI 178 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~g-~i 178 (609)
++|||+||+++.+++ +++++++|+.+ ..|+++||||||++.++..+..+. .+.+.| .+
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~-------------------~~~s~Ge~~ 60 (227)
T cd04234 1 MVVQKFGGTSVASAERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA-------------------LLLSFGERL 60 (227)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH-------------------HHHHHHHHH
Confidence 479999999998765 78999999999 889999999999888776654432 223333 34
Q ss_pred HHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhC-CCeEEEc
Q 007275 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG-GCLVILS 257 (609)
Q Consensus 179 ~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~-G~IPVi~ 257 (609)
+..+... .|+++|++ +..+++.+..+... ++++.+.+..++.+.|+++++. |.|||++
T Consensus 61 ~~~l~~~--------~l~~~Gi~----a~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~ 119 (227)
T cd04234 61 SARLLAA--------ALRDRGIK----ARSLDARQAGITTD---------DNHGAARIIEISYERLKELLAEIGKVPVVT 119 (227)
T ss_pred HHHHHHH--------HHHHCCCC----eEEeCHHHCCEEcC---------CccchhhHHHHHHHHHHHHHhhCCCEEEec
Confidence 5555443 47889987 77777666444332 3345666777889999999999 9999999
Q ss_pred C-CccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHH
Q 007275 258 N-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (609)
Q Consensus 258 ~-~~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~ 317 (609)
+ .+.+..|++.++ ++|.+|+.+|.+|+||+|+|+|||||++ +++++|++++.+|++++..
T Consensus 120 g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~ 190 (227)
T cd04234 120 GFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAY 190 (227)
T ss_pred CceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHHHHh
Confidence 9 466778888777 7999999999999999999999999984 3589999999999988764
No 47
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.90 E-value=1.3e-22 Score=204.50 Aligned_cols=215 Identities=19% Similarity=0.169 Sum_probs=153.4
Q ss_pred CeEEEEeCCcccCCC-----C---hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHH-cCCcccccCCccCCCHHHHHH
Q 007275 100 GTFVVIISGEIVSSP-----Y---LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSE-RGHEAKYLGRYRITDSESLAA 170 (609)
Q Consensus 100 k~iVIKlGGsvl~~~-----~---l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~-~g~~~~~~~g~rvt~~~~l~~ 170 (609)
+++|||+||++|+++ + +++++++|+.+...|+++|||||||++++..... .++ +...++.
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~~~~~-----------~~~~~~~ 69 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGM-----------DRATADY 69 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHhhcCC-----------ChhhHHH
Confidence 479999999999842 1 6789999999999999999999999887665321 222 2234555
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhC
Q 007275 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (609)
Q Consensus 171 ~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~ 250 (609)
..++..++|..+... .|+++|++ +..++... +++.+. ....+.+.++|+.
T Consensus 70 ~~~~~~~l~~~ll~~--------~l~~~Gi~----a~~~~~~~----------------~~~~~~--~~~~~~~~~~l~~ 119 (231)
T PRK00358 70 MGMLATVMNALALQD--------ALERAGVD----TRVQSAIP----------------MPQVAE--PYIRRRAIRHLEK 119 (231)
T ss_pred HHHHHHHHHHHHHHH--------HHHHcCCC----eEEechhh----------------cccccC--cccHHHHHHHHHC
Confidence 544566788754443 46888986 32211111 111111 1234578899999
Q ss_pred CCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHHhhchhh
Q 007275 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQS 323 (609)
Q Consensus 251 G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~~~~~~~ 323 (609)
|.|||+++.. + .-+.++|.+|+++|.+|+||+|+|+|||||++ +++++|++++.+|+.++ +.
T Consensus 120 g~vPVv~g~~----~-~~~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~---g~--- 188 (231)
T PRK00358 120 GRVVIFAAGT----G-NPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEK---GL--- 188 (231)
T ss_pred CCEEEEECCC----C-CCCCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHc---CC---
Confidence 9999997522 1 11458999999999999999999999999984 36899999987764322 11
Q ss_pred hhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHH
Q 007275 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (609)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~k 403 (609)
...+
T Consensus 189 ----------------------------------------------------------------------------~~~d 192 (231)
T PRK00358 189 ----------------------------------------------------------------------------KVMD 192 (231)
T ss_pred ----------------------------------------------------------------------------cchh
Confidence 2236
Q ss_pred HHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 404 l~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
+.++..|.+.|++ ++|+||..++. |..+++++..||.|.
T Consensus 193 ~~a~~~a~~~~i~-v~I~~g~~~~~-l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 193 ATAISLARDNKIP-IIVFNMNKPGN-LKRVVKGEHIGTLVS 231 (231)
T ss_pred HHHHHHHHHcCCc-EEEECCCCchH-HHHHHCCCCCCEEeC
Confidence 7788888899997 99999999985 566777888999873
No 48
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.90 E-value=1e-22 Score=204.93 Aligned_cols=214 Identities=18% Similarity=0.164 Sum_probs=155.7
Q ss_pred eEEEEeCCcccCCCC-------hHHHHHHHHHHHhCCCeEEEEECChHH-HhHHHHHcCCcccccCCccCCCHHHHHHHH
Q 007275 101 TFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHEAKYLGRYRITDSESLAAAM 172 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~-------l~~l~~~Ia~L~~~G~~vVLVhGgG~~-i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~ 172 (609)
++|||+||+++++++ ++++++.|+.+.+.|+++|||||||.+ .+.....+++. +..++...
T Consensus 1 ~iViKiGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~~~~~-----------~~~~~~~~ 69 (229)
T cd04239 1 RIVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMP-----------RATADYIG 69 (229)
T ss_pred CEEEEECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhhcCCC-----------hhhHHHHH
Confidence 589999999998842 678899999888889999999998885 34333333332 12234444
Q ss_pred HHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCC
Q 007275 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGC 252 (609)
Q Consensus 173 ~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~ 252 (609)
.....++..+++. .|.++|++ +..++..+-... ....+.+.+..+|+.|.
T Consensus 70 ~~~~~l~~~l~~~--------~l~~~Gi~----a~~~~~~~~~~~------------------~~~~~~~~l~~~l~~g~ 119 (229)
T cd04239 70 MLATVMNALALQD--------ALEKLGVK----TRVMSAIPMQGV------------------AEPYIRRRAIRHLEKGR 119 (229)
T ss_pred HHHHHHHHHHHHH--------HHHHcCCC----EEEeCHHHHhhh------------------hccccHHHHHHHHhCCC
Confidence 4444667767554 46888987 455444321100 11246788999999999
Q ss_pred eEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHHhhchhhhh
Q 007275 253 LVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEI 325 (609)
Q Consensus 253 IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~~~~~~~~~ 325 (609)
|||+++.. | ..+.++|.+|+.+|.+|+||+|+|+|||||++ |++++|++++.+|+.++..
T Consensus 120 ipVi~g~~----g-~~~~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~-------- 186 (229)
T cd04239 120 IVIFGGGT----G-NPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL-------- 186 (229)
T ss_pred EEEEeCcc----C-CCCCCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhc--------
Confidence 99999765 2 23458999999999999999999999999984 3589999999877665421
Q ss_pred HhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHHHH
Q 007275 326 AANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELA 405 (609)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~ 405 (609)
|..++.
T Consensus 187 --------------------------------------------------------------------------~~~~~~ 192 (229)
T cd04239 187 --------------------------------------------------------------------------KVMDAT 192 (229)
T ss_pred --------------------------------------------------------------------------CCccHH
Confidence 223456
Q ss_pred HHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 406 AAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 406 aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
++..+.+.|++ ++|+|+..++. +.++++++..||.|.
T Consensus 193 a~~~~~~~~i~-v~I~~g~~~~~-l~~~l~g~~~GT~i~ 229 (229)
T cd04239 193 ALTLCRRNKIP-IIVFNGLKPGN-LLRALKGEHVGTLIE 229 (229)
T ss_pred HHHHHHHCCCe-EEEECCCChhH-HHHHHcCCCCCeEeC
Confidence 67778888986 99999999986 577777778899874
No 49
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.90 E-value=2.3e-22 Score=205.39 Aligned_cols=212 Identities=20% Similarity=0.233 Sum_probs=152.4
Q ss_pred CeEEEEeCCcccCCCC---hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHH---HcCCcccccCCccCCCHHHHHHHHH
Q 007275 100 GTFVVIISGEIVSSPY---LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLS---ERGHEAKYLGRYRITDSESLAAAME 173 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~---l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~---~~g~~~~~~~g~rvt~~~~l~~~~~ 173 (609)
..+|||||||+|++++ +.+++++|+.+.+ +++++||||||.+.+.... .+|+ +...++....
T Consensus 31 ~~~ViKiGGSvitdk~~~~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~-----------~~~~~~~~~~ 98 (262)
T cd04255 31 DLNVVKIGGQSIIDRGAEAVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGM-----------PTGVLAKLGA 98 (262)
T ss_pred CcEEEEeccceecCCcHHHHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCC-----------CchHHHHHHH
Confidence 3699999999999875 7889999998876 7899999999998854321 2333 1223334444
Q ss_pred HHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCe
Q 007275 174 AAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCL 253 (609)
Q Consensus 174 ~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~I 253 (609)
++..+|..+... .|..+|++ ++ ...+...++++|+.|+|
T Consensus 99 aa~~ln~lv~~~--------~l~~~g~~----~i-----------------------------~~~~~~~l~~lL~~g~v 137 (262)
T cd04255 99 SVSEQNAEMLAT--------LLAKHGGS----KV-----------------------------GHGDLLQLPTFLKAGRA 137 (262)
T ss_pred HHHHHHHHHHHH--------HHHHcCCC----cc-----------------------------ccccHHHHHHHHHCCCe
Confidence 555666666543 24566664 11 11244579999999999
Q ss_pred EEEcCCccC-------CCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHHhh
Q 007275 254 VILSNLGYS-------SSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQR 319 (609)
Q Consensus 254 PVi~~~~~~-------~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~~~ 319 (609)
||+++++.. ..|...++|+|.+|+++|.+|+||+|+++|||||++ +++++|++++.+++.++....
T Consensus 138 PVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~ 217 (262)
T cd04255 138 PVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDD 217 (262)
T ss_pred EEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCC
Confidence 999998432 124467999999999999999999999999999984 368999999987665542110
Q ss_pred chhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccC
Q 007275 320 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 399 (609)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~ 399 (609)
. .+ +| |
T Consensus 218 ~---------------------------------------------------~~-~~-~--------------------- 223 (262)
T cd04255 218 L---------------------------------------------------VL-ER-P--------------------- 223 (262)
T ss_pred C---------------------------------------------------CC-cH-H---------------------
Confidence 0 00 12 3
Q ss_pred CHHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 400 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 400 m~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
|.+|+++|. ++..++|+||+.++. |.+++.++..||.|.
T Consensus 224 ~~~~l~aa~-----~~~~v~I~~g~~~~~-L~~~l~g~~~GT~i~ 262 (262)
T cd04255 224 VLDLLQNAR-----HVKEVQIVNGLVPGN-LTRALRGEHVGTIIR 262 (262)
T ss_pred HHHHHHHhC-----CCCcEEEEeCCCCCH-HHHHHcCCCCceEeC
Confidence 888887763 223599999999985 677788888999874
No 50
>PRK08210 aspartate kinase I; Reviewed
Probab=99.89 E-value=3.8e-22 Score=216.90 Aligned_cols=191 Identities=16% Similarity=0.187 Sum_probs=154.2
Q ss_pred CeEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEE-----CChHHHhHHHHHcCCcccccCCccCCCHHHHHHHHH
Q 007275 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVP-----GTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAME 173 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVh-----GgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~ 173 (609)
+++|||+||+++++++ ..+++++|+.+.+.|+++|||| ||||++...+..+..... +.++...++.+ .
T Consensus 2 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~-----~~~~~~~~~~l-~ 75 (403)
T PRK08210 2 KIIVQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEF-----SEISKREQDLL-M 75 (403)
T ss_pred CeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhc-----cCCChHHHHHH-H
Confidence 6899999999999866 6889999999999999999999 677788777665443221 23455555554 5
Q ss_pred HHHHHHHH--HHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCC
Q 007275 174 AAGGIRMM--IEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (609)
Q Consensus 174 ~~g~i~~~--l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G 251 (609)
+.|+++.. +.+ .|+++|++ +.++++.+..+++..+ ++ .+++..++.+.|+.+|+.|
T Consensus 76 ~~Ge~~s~~~~~~---------~l~~~Gi~----a~~l~~~~~~~~t~~~--------~~-~~~v~~~~~~~l~~~l~~~ 133 (403)
T PRK08210 76 SCGEIISSVVFSN---------MLNENGIK----AVALTGGQAGIITDDN--------FT-NAKIIEVNPDRILEALEEG 133 (403)
T ss_pred hHhHHHHHHHHHH---------HHHhCCCC----eEEechHHccEEccCC--------CC-ceeeehhhHHHHHHHHhcC
Confidence 66777654 444 36889988 8899888877777553 22 3677788999999999999
Q ss_pred CeEEEcCC-ccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHHh
Q 007275 252 CLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQ 318 (609)
Q Consensus 252 ~IPVi~~~-~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~~ 318 (609)
.|||+++. +.+..|+++++ ++|.+|+.+|.+|+||+++|+|||||++ +++++|++++.+|++++...
T Consensus 134 ~vpVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~ 211 (403)
T PRK08210 134 DVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQ 211 (403)
T ss_pred CEEEeeCeeecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHC
Confidence 99999997 67788999888 6999999999999999999999999984 36899999999999998754
No 51
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.89 E-value=8.9e-22 Score=198.35 Aligned_cols=216 Identities=18% Similarity=0.178 Sum_probs=150.4
Q ss_pred CeEEEEeCCcccCCCC--------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHH
Q 007275 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~--------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~ 171 (609)
+++|||+|||+|++++ +.+++++|+.+++.|+++|||||||.... .....++ +....+.+
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~-g~~~~~~-----------~~~~~d~i 68 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFR-GVELKEL-----------SPTRADQI 68 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHH-HHhccCC-----------ChHHHHHH
Confidence 5799999999998753 57899999999999999999999987633 2111111 12223333
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCC
Q 007275 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (609)
Q Consensus 172 ~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G 251 (609)
......+|..+... .|.++|++ ++.+.. ++.. +.+.....+.++.+|+.|
T Consensus 69 g~~~~~ln~~~~~~--------~l~~~gi~----a~~~~~----~~~~--------------~~~~~~~~~~i~~ll~~g 118 (231)
T PRK14558 69 GMLGTVINALYLKD--------IFEKSGLK----AVIVSQ----IVNL--------------PSVEPINYDDIELYFRAG 118 (231)
T ss_pred HHHHHHHHHHHHHH--------HHHHcCCC----eEEecc----cccc--------------chhhhhhHHHHHHHHHCC
Confidence 22223345443222 36889987 444332 1110 011123467999999999
Q ss_pred CeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHHhhchhhh
Q 007275 252 CLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSE 324 (609)
Q Consensus 252 ~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~~~~~~~~ 324 (609)
.|||++++.. ..++++|.+|+.+|..|+||.|+++|||||++ |++++|++++.+|+.++ +.
T Consensus 119 ~vpV~~G~~~-----~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~---g~---- 186 (231)
T PRK14558 119 YIVIFAGGTS-----NPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GL---- 186 (231)
T ss_pred CEEEEECCCC-----CCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHc---Cc----
Confidence 9999998631 33568999999999999999999999999983 35899999997665443 11
Q ss_pred hHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHHH
Q 007275 325 IAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSEL 404 (609)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl 404 (609)
. . | +.
T Consensus 187 ---------------------------------------------------~-~---------------------~--d~ 191 (231)
T PRK14558 187 ---------------------------------------------------K-V---------------------M--DT 191 (231)
T ss_pred ---------------------------------------------------c-c---------------------c--cH
Confidence 0 1 2 25
Q ss_pred HHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccccc
Q 007275 405 AAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (609)
Q Consensus 405 ~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~d 446 (609)
.++..|.+.|++ ++|+|+..++.| ..++.++..||.|.++
T Consensus 192 ~a~~~a~~~gi~-v~I~ng~~~~~l-~~~l~g~~~GT~i~~~ 231 (231)
T PRK14558 192 EAFSICKKYGIT-ILVINFFEPGNL-LKALKGENVGTLVVPD 231 (231)
T ss_pred HHHHHHHHCCCC-EEEEeCCCCCHH-HHHHCCCCCcEEeCCC
Confidence 566777788997 999999999865 4555777899999764
No 52
>PRK06635 aspartate kinase; Reviewed
Probab=99.88 E-value=1.7e-21 Score=212.03 Aligned_cols=191 Identities=18% Similarity=0.231 Sum_probs=149.2
Q ss_pred CeEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECC-hHHHhHHHHHcCCcccccCCccCCCHHHHHHHHHHHHH
Q 007275 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGG 177 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGg-G~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~g~ 177 (609)
+++|||+||+++.++. +++++++|+.+.+.|+++|||||| |+.++.+++....... .++...++.+......
T Consensus 2 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~Ge~ 75 (404)
T PRK06635 2 ALIVQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSP------LPDPRELDMLLSTGEQ 75 (404)
T ss_pred CeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhcc------CCCHHHHHHHhhhhHH
Confidence 5799999999998865 799999999998889999988886 6777777665432111 1255566654332224
Q ss_pred HHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEEEc
Q 007275 178 IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILS 257 (609)
Q Consensus 178 i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi~ 257 (609)
++..+... .|+++|++ +..+++.+..+++..+ |+ .+++..++.+.|+.+|+.|.|||++
T Consensus 76 ~~~~~~~~--------~l~~~g~~----a~~l~~~~~~~~~~~~--------~~-~~~~~~~~~~~l~~~l~~~~ipVi~ 134 (404)
T PRK06635 76 VSVALLAM--------ALQSLGVK----ARSFTGWQAGIITDSA--------HG-KARITDIDPSRIREALDEGDVVVVA 134 (404)
T ss_pred HHHHHHHH--------HHHhCCCC----eEEeChhhCCEEecCC--------CC-ceEeeecCHHHHHHHHhCCCEEEec
Confidence 55543333 36899988 7888887766666432 22 4677888999999999999999999
Q ss_pred CC-ccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHH
Q 007275 258 NL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (609)
Q Consensus 258 ~~-~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~ 317 (609)
+. +.+..|++.++ ++|.+|+++|.+|+||+|+++|||||++ +++++|++++.+|++++..
T Consensus 135 g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~ 205 (404)
T PRK06635 135 GFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELAS 205 (404)
T ss_pred CccEeCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHH
Confidence 94 67788999988 9999999999999999999999999984 4689999999999988853
No 53
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.88 E-value=2.2e-21 Score=210.94 Aligned_cols=192 Identities=18% Similarity=0.220 Sum_probs=149.5
Q ss_pred eEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHHHHHHHHH-
Q 007275 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGI- 178 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~g~i- 178 (609)
++|+|+||+++.+++ +++++++|+.+++.|+++||||||++.+...+.+++... . ..++++.+ .+.+......+
T Consensus 2 ~iViK~GGs~~~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~-~--~~~~~~~~-~~~i~~~Ge~~s 77 (401)
T TIGR00656 2 LIVQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKA-I--RDAITPRE-RDELVSHGERLS 77 (401)
T ss_pred cEEEEECCcCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHH-h--ccCCChHH-HHHHhhHHHHHH
Confidence 589999999998766 799999999998899999999999999888776654210 0 01344443 33332223334
Q ss_pred HHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCH-HHHHHHHhCCCeEEEc
Q 007275 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV-TRMRERLDGGCLVILS 257 (609)
Q Consensus 179 ~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~-~~I~~LL~~G~IPVi~ 257 (609)
+..+.. .|+++|++ ++++++.+..+++..+ ++ .+++..++. +.|+.+++.|.|||++
T Consensus 78 ~~~~~~---------~l~~~g~~----a~~l~~~~~~~~t~~~--------~~-~~~~~~~~~~~~l~~~l~~~~vpVi~ 135 (401)
T TIGR00656 78 SALFSG---------ALRDLGVK----AIWLDGGEAGIITDDN--------FG-NAKIDIIATEERLLPLLEEGIIVVVA 135 (401)
T ss_pred HHHHHH---------HHHhCCCc----eEEeccccceEEeCCC--------CC-ceEeeecchHHHHHHHHhCCCEEEec
Confidence 344444 46899988 8999988887777543 22 256677777 9999999999999999
Q ss_pred C-CccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHHh
Q 007275 258 N-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQ 318 (609)
Q Consensus 258 ~-~~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~~ 318 (609)
+ .+.+..|+..++ ++|.+|+.+|.+|+||+|+++|||||++ +++++|++++.+|+.++...
T Consensus 136 g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~ 207 (401)
T TIGR00656 136 GFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATF 207 (401)
T ss_pred CcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHc
Confidence 9 577777888876 6999999999999999999999999984 46889999999999998754
No 54
>PRK08841 aspartate kinase; Validated
Probab=99.88 E-value=6.1e-21 Score=205.73 Aligned_cols=193 Identities=17% Similarity=0.236 Sum_probs=151.8
Q ss_pred CeEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHHHHHHHHH
Q 007275 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGI 178 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~g~i 178 (609)
+++|+|+||+++.+++ +++++++|+.+.+.|.++|+||||++.....+..+..... +++++..++.+......+
T Consensus 2 ~~~V~KfGGtsv~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~~-----~~~~~~~~d~l~s~GE~~ 76 (392)
T PRK08841 2 PLIVQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVD-----SVPTARELDVLLSAGEQV 76 (392)
T ss_pred CeEEEeECcccCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhhc-----cCCCHHHHHHHHHHHHHH
Confidence 4799999999998865 7999999999999999999999998855444433333221 456777777765444445
Q ss_pred HHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEEEcC
Q 007275 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN 258 (609)
Q Consensus 179 ~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi~~ 258 (609)
...+.+. .|++.|++ +..+++.+..+++... + ..+.+..++.+.|+.+++.|.|||+++
T Consensus 77 s~~lla~--------~L~~~Gi~----a~~l~~~~~~i~t~~~--------~-~~~~i~~~~~~~i~~ll~~~~vpVv~G 135 (392)
T PRK08841 77 SMALLAM--------TLNKLGYA----ARSLTGAQANIVTDNQ--------H-NDATIKHIDTSTITELLEQDQIVIVAG 135 (392)
T ss_pred HHHHHHH--------HHHhCCCC----eEEEehhHcCEEecCC--------C-CCceechhhHHHHHHHHhCCCEEEEeC
Confidence 5555444 47889988 7888887765555321 1 246777788899999999999999999
Q ss_pred C-ccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHHh
Q 007275 259 L-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQ 318 (609)
Q Consensus 259 ~-~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~~ 318 (609)
. +.+.+|++.++ ++|.+|+.+|.+|+||.|+++|||||++ |++++|++++.+|+.++...
T Consensus 136 f~g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~ 206 (392)
T PRK08841 136 FQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARK 206 (392)
T ss_pred CcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhc
Confidence 5 66788998888 9999999999999999999999999983 46899999999999888643
No 55
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.88 E-value=2.6e-21 Score=194.91 Aligned_cols=215 Identities=20% Similarity=0.179 Sum_probs=151.4
Q ss_pred CeEEEEeCCcccCCCC--------hHHHHHHHHHHHhCCCeEEEEECChHHH-hHHHHHcCCcccccCCccCCCHHHHHH
Q 007275 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQI-DKLLSERGHEAKYLGRYRITDSESLAA 170 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~--------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i-~~~l~~~g~~~~~~~g~rvt~~~~l~~ 170 (609)
+++||||||++|++++ +.+++++|+.+...|+++|||||||+++ +....+++ +.+.+ .+.
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~~~~~-------~~~~~----~d~ 69 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAG-------MDRAT----ADY 69 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccchhhhcC-------CCchh----hhH
Confidence 5799999999998542 5788999998888889999999999875 21122222 22222 223
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhC
Q 007275 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (609)
Q Consensus 171 ~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~ 250 (609)
+..+..+++..+... .|+++|++ +..+++.+-+. . ...++.+.++.+|+.
T Consensus 70 ~g~~~~~~n~~ll~~--------~L~~~Gv~----a~~l~~~~~~~----------------~--~~~~~~~~l~~~l~~ 119 (231)
T cd04254 70 MGMLATVINALALQD--------ALESLGVK----TRVMSAIPMQG----------------V--AEPYIRRRAIRHLEK 119 (231)
T ss_pred HHHHHHHHHHHHHHH--------HHHHcCCC----eEEEcHHHhhh----------------h--hcccCHHHHHHHHHC
Confidence 333455666644433 46888886 55554443111 1 124678899999999
Q ss_pred CCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHHhhchhh
Q 007275 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQS 323 (609)
Q Consensus 251 G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~~~~~~~ 323 (609)
|.|||+++. .| ...+++|.+|+++|.+|+||+|+|+|||||++ |++++|++++.+|+... +.
T Consensus 120 g~ipV~~g~----~G-~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~---~~--- 188 (231)
T cd04254 120 GRVVIFAGG----TG-NPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---GL--- 188 (231)
T ss_pred CCEEEEECC----cC-CCCCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhc---ch---
Confidence 999999843 12 22558999999999999999999999999984 35889999998765321 11
Q ss_pred hhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHH
Q 007275 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (609)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~k 403 (609)
..-+
T Consensus 189 ----------------------------------------------------------------------------~~~d 192 (231)
T cd04254 189 ----------------------------------------------------------------------------KVMD 192 (231)
T ss_pred ----------------------------------------------------------------------------hhhH
Confidence 1124
Q ss_pred HHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 404 l~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
+.++..|.+.|++ ++|++|..++.| ..++.++..||.|.
T Consensus 193 ~~a~~~a~~~gi~-~~I~~g~~~~~l-~~~l~g~~~GT~i~ 231 (231)
T cd04254 193 ATAFTLCRDNNLP-IVVFNINEPGNL-LKAVKGEGVGTLIS 231 (231)
T ss_pred HHHHHHHHHCCCe-EEEEeCCCccHH-HHHHCCCCCCEEeC
Confidence 6677778888987 999999999865 45556778999884
No 56
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.87 E-value=3.6e-22 Score=184.04 Aligned_cols=147 Identities=39% Similarity=0.739 Sum_probs=139.0
Q ss_pred ccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhcCeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCc
Q 007275 450 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQG 529 (609)
Q Consensus 450 ~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqG 529 (609)
+||.|+.+|++.|.+++.++...+++.+++.+.+...+..|++++++|.++||+++.++.+.+.++|.+++|+|+||++|
T Consensus 2 ~iR~A~~~Di~~I~~Li~~~~~~gil~~rs~~~le~~i~dF~i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G 81 (153)
T COG1246 2 QIRKARISDIPAILELIRPLELQGILLRRSREQLEEEIDDFTIIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSG 81 (153)
T ss_pred ceeeccccchHHHHHHHHHHhhccccchhhHHHHHHHHhhheeeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCC
Confidence 68999999999999999999999999999999999999999999999999999999987889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeHHHHHHHHHCCCeEeeeecchhHhhhhcccC-CCceeEEeecC
Q 007275 530 QGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLS-RNSKYYMKKLL 596 (609)
Q Consensus 530 iG~~LL~~l~~~A~~~G~~~I~l~t~~a~~fYek~GF~~~~~~~lp~~~~~~y~~~-~~s~i~mkkll 596 (609)
+|.+|+++++..|++.|++++|+.|+.+..||+++||+.++.+.+|...+..|+++ +.++..+..++
T Consensus 82 ~G~~Ll~~~~~~Ar~~gi~~lf~LTt~~~~~F~~~GF~~vd~~~LP~~~~~~~~~~~~~~~~~~~~~~ 149 (153)
T COG1246 82 RGERLLERLLADARELGIKELFVLTTRSPEFFAERGFTRVDKDELPEEVWSSYNFCERRSKCLAFDLL 149 (153)
T ss_pred cHHHHHHHHHHHHHHcCCceeeeeecccHHHHHHcCCeECccccCCHHHHHHHHhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988 66666554443
No 57
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.86 E-value=1.7e-20 Score=189.28 Aligned_cols=215 Identities=20% Similarity=0.159 Sum_probs=150.4
Q ss_pred CeEEEEeCCcccCCC-----C---hHHHHHHHHHHHhCCCeEEEEECChHHH-hHHHHHcCCcccccCCccCCCHHHHHH
Q 007275 100 GTFVVIISGEIVSSP-----Y---LDPILKDIAFLHHLGIRFVLVPGTHVQI-DKLLSERGHEAKYLGRYRITDSESLAA 170 (609)
Q Consensus 100 k~iVIKlGGsvl~~~-----~---l~~l~~~Ia~L~~~G~~vVLVhGgG~~i-~~~l~~~g~~~~~~~g~rvt~~~~l~~ 170 (609)
+++|||+|||+|+++ + +++++++|+.+...|+++|||||||.+. +...++++.... . ++.
T Consensus 2 ~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~a~~~~~~~~--------~---~d~ 70 (233)
T TIGR02075 2 KRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKELGIDRV--------T---ADY 70 (233)
T ss_pred CEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHHHHhcCCCCc--------c---HHH
Confidence 589999999999852 1 5788999998888899999999999753 322356554321 1 223
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhC
Q 007275 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (609)
Q Consensus 171 ~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~ 250 (609)
.......++..++.. .|.++|++ +..++..+-. + .......+.++.+|++
T Consensus 71 ~g~~~~~l~~~l~~~--------~L~~~Gi~----a~~l~~~~~~-----~-------------~~~~~~~~~i~~ll~~ 120 (233)
T TIGR02075 71 MGMLATVINGLALRD--------ALEKLGVK----TRVLSAISMP-----Q-------------ICESYIRRKAIKHLEK 120 (233)
T ss_pred HHHHHHHHHHHHHHH--------HHHhCCCC----cEEeccccCC-----C-------------CccccCHHHHHHHHHC
Confidence 322233455544322 36888987 5555544311 0 0012346789999999
Q ss_pred CCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEec-ccccC-------CCCccccccCHHHHHHHHHhhchh
Q 007275 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPILD-------ESGHLIRFLTLQEADSLIRQRVKQ 322 (609)
Q Consensus 251 G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTD-vdgv~-------~~~~lI~~it~~e~~~l~~~~~~~ 322 (609)
|+|||+++.. | ..++++|.+|+++|..|+||+|+|+|| |||++ +++++|++++.+|+... +.
T Consensus 121 g~VpV~~g~~----g-~~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~---~~-- 190 (233)
T TIGR02075 121 GKVVIFSGGT----G-NPFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---NL-- 190 (233)
T ss_pred CCEEEEECCC----C-CCCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhc---CH--
Confidence 9999987531 1 236889999999999999999999999 99983 35889999997765422 11
Q ss_pred hhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHH
Q 007275 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 402 (609)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~ 402 (609)
...
T Consensus 191 -----------------------------------------------------------------------------~~~ 193 (233)
T TIGR02075 191 -----------------------------------------------------------------------------KVM 193 (233)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 112
Q ss_pred HHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 403 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 403 kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
++.++..|.+.|++ ++|+||..++. |..++.++..||.|.
T Consensus 194 d~~~~~~a~~~~i~-v~i~~g~~~~~-l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 194 DLTAFALARDNNLP-IVVFNIDEPGA-LKKVILGKGIGTLVS 233 (233)
T ss_pred HHHHHHHHHHCCCe-EEEEeCCCcch-HHHHHCCCCCCEEeC
Confidence 46677778888986 99999999986 455557788999874
No 58
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.86 E-value=2e-20 Score=187.32 Aligned_cols=210 Identities=16% Similarity=0.158 Sum_probs=149.2
Q ss_pred EEEEeCCcccCCC---C-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHHHHHHHH
Q 007275 102 FVVIISGEIVSSP---Y-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGG 177 (609)
Q Consensus 102 iVIKlGGsvl~~~---~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~g~ 177 (609)
+||||||++|+++ + +.+++++|+.+... +++|||||||.+...+++. .... . .....++.......+
T Consensus 1 iViKlGGs~l~~~~~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~---~~~~----~-~~~~~~~~~g~~~~~ 71 (221)
T TIGR02076 1 IVISLGGSVLSPEIDAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGV---AREL----G-ASETFLDEIGIDATR 71 (221)
T ss_pred CEEEechhhcCCCCCHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHH---HHHc----C-CCHHHHHHhhhHHHH
Confidence 5999999999875 2 78889999988766 8999999999987554321 1100 0 122344444444567
Q ss_pred HHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEEEc
Q 007275 178 IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILS 257 (609)
Q Consensus 178 i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi~ 257 (609)
+|..+.+.| |...+++ .+. .+.....++|+.|.|||+.
T Consensus 72 ln~~~l~~l--------l~~~~~~----~~~------------------------------~~~~~~~~~l~~g~ipv~~ 109 (221)
T TIGR02076 72 LNAMLLIAA--------LGDDAYP----KVP------------------------------ENFEEALEAMSLGKIVVMG 109 (221)
T ss_pred HHHHHHHHH--------HHhcCCC----CcC------------------------------CCHHHHHHHHHcCCEEEEc
Confidence 777776653 3434443 110 0123456778899999999
Q ss_pred CCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHHhhchhhhhHhhhh
Q 007275 258 NLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYV 330 (609)
Q Consensus 258 ~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~~~~~~~~~~~~~~ 330 (609)
+.. . .+++|.+|+++|.+|+||+|+++|||||++ |++++|++++.+|+.++..+.
T Consensus 110 G~~---~----~~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~----------- 171 (221)
T TIGR02076 110 GTH---P----GHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSS----------- 171 (221)
T ss_pred CCC---C----CCCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCC-----------
Confidence 752 1 378999999999999999999999999984 368999999988887765321
Q ss_pred hhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHHHH
Q 007275 331 KAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFV 410 (609)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~a 410 (609)
.+++|.+ |..|+.++..+
T Consensus 172 -----------------------------------------~~~~g~~---------------------~~~~~~a~~~~ 189 (221)
T TIGR02076 172 -----------------------------------------SVKAGSN---------------------EVVDPLAAKII 189 (221)
T ss_pred -----------------------------------------CccCCCC---------------------ceeHHHHHHHH
Confidence 1223312 66788888888
Q ss_pred HHcCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 411 CRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 411 ~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
.+.|++ ++|++|..++.++ .++.++..||.|.
T Consensus 190 ~~~~i~-v~I~~g~~~~~l~-~~l~g~~~GT~i~ 221 (221)
T TIGR02076 190 ERSKIR-TIVVNGRDPENLE-KVLKGEHVGTIIE 221 (221)
T ss_pred HHCCCc-EEEECCCCccHHH-HHHCCCCCCeEeC
Confidence 888886 9999999998655 5677778899873
No 59
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.86 E-value=1.9e-20 Score=187.49 Aligned_cols=210 Identities=16% Similarity=0.138 Sum_probs=151.2
Q ss_pred eEEEEeCCcccCCC---C-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHHHHHHH
Q 007275 101 TFVVIISGEIVSSP---Y-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAG 176 (609)
Q Consensus 101 ~iVIKlGGsvl~~~---~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~g 176 (609)
++||||||++++++ + +.++++.|+.+.. |.++|||||||++.+.+.+....- .. +...++.......
T Consensus 1 ~iViKlGGs~l~~~~~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~-------~~-~~~~~d~~g~~~~ 71 (221)
T cd04253 1 RIVISLGGSVLAPEKDADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARKL-------GA-SEAFLDEIGIMAT 71 (221)
T ss_pred CEEEEeccceeCCCCChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHc-------CC-CHHHHHHhcCHHH
Confidence 58999999999874 2 6788888887765 789999999999887764432100 00 1123344433345
Q ss_pred HHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEEE
Q 007275 177 GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVIL 256 (609)
Q Consensus 177 ~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi 256 (609)
.+|..+.+.+ .++|++ ++. ++.+.+..+|+.|.|||+
T Consensus 72 ~ln~~~~~~~---------l~~~~~----~~~------------------------------~~~~~~~~~l~~g~vpv~ 108 (221)
T cd04253 72 RLNARLLIAA---------LGDAYP----PVP------------------------------TSYEEALEAMFTGKIVVM 108 (221)
T ss_pred HHHHHHHHHH---------HhcCCC----cCC------------------------------CCHHHHHHHHHcCCeEEE
Confidence 7777776653 234443 111 134567889999999999
Q ss_pred cCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHHhhchhhhhHhhh
Q 007275 257 SNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANY 329 (609)
Q Consensus 257 ~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~~~~~~~~~~~~~ 329 (609)
.+... ++++|.+|+.+|.+|+||+|+++|||||++ +++++|++++.+|+.++....
T Consensus 109 ~G~~~-------~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~---------- 171 (221)
T cd04253 109 GGTEP-------GQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKS---------- 171 (221)
T ss_pred ECCCC-------CCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCC----------
Confidence 98532 357899999999999999999999999984 358999999988877764221
Q ss_pred hhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHHHHHHHH
Q 007275 330 VKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAF 409 (609)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl~aa~~ 409 (609)
.+..|.+ |..++.++..
T Consensus 172 ------------------------------------------~~~~g~~---------------------~~~d~~a~~~ 188 (221)
T cd04253 172 ------------------------------------------SWKAGSN---------------------EPFDPLAAKI 188 (221)
T ss_pred ------------------------------------------CcCCCCC---------------------cchHHHHHHH
Confidence 0111211 5667888888
Q ss_pred HHHcCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 410 VCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 410 a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
+.+.|++ ++|++|..++. |.++++++..||.|.
T Consensus 189 ~~~~gi~-~~I~~g~~p~~-l~~~l~g~~~GT~I~ 221 (221)
T cd04253 189 IERSGIK-TIVVDGRDPEN-LERALKGEFVGTIIE 221 (221)
T ss_pred HHHCCCe-EEEECCCCccH-HHHHHCCCCCCeEeC
Confidence 9999997 99999998984 667778888999873
No 60
>PRK07431 aspartate kinase; Provisional
Probab=99.85 E-value=5.5e-20 Score=209.05 Aligned_cols=191 Identities=18% Similarity=0.240 Sum_probs=144.3
Q ss_pred CeEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECC-hHHHhHHHHHcCCcccccCCccCCCHHHHHHHHHHHHH
Q 007275 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGG 177 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGg-G~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~g~ 177 (609)
+++|+|+||+++.+++ +++++++|+.+...|+++|||||+ |...+.++ +++.... ...+...++.+......
T Consensus 2 ~~iViKfGGss~~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~-~~~~~~t-----~~~~~~~~~~~ls~Ge~ 75 (587)
T PRK07431 2 ALIVQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELV-KLAKEIS-----SNPPRREMDMLLSTGEQ 75 (587)
T ss_pred CeEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHH-HHHHHhc-----cCCCHHHHHHHHHHhHH
Confidence 4799999999998765 799999999999999999999996 44444443 4432100 01122333333333345
Q ss_pred HHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEEEc
Q 007275 178 IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILS 257 (609)
Q Consensus 178 i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi~ 257 (609)
++..+.+. .|+++|++ ++++++.+..+++... ++ .+++..++.+.|+++|+.|.|||++
T Consensus 76 ~s~~l~~~--------~l~~~gi~----a~~l~~~~~~~~~~~~--------~~-~~~i~~~~~~~l~~~l~~g~vpVv~ 134 (587)
T PRK07431 76 VSIALLSM--------ALHELGQP----AISLTGAQVGIVTESE--------HG-RARILEIKTDRIQRHLDAGKVVVVA 134 (587)
T ss_pred HHHHHHHH--------HHHHCCCC----eEEechhHcCeEecCC--------CC-ceeeeeccHHHHHHHHhCCCeEEec
Confidence 66666654 37899988 8899888877666432 23 3778888999999999999999999
Q ss_pred CC-cc--CCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHH
Q 007275 258 NL-GY--SSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (609)
Q Consensus 258 ~~-~~--~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~ 317 (609)
+. +. ...|++.++ ++|.+|+.+|.+|+||+|+++|||||++ +++++|++++.+|+.++..
T Consensus 135 g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~ 207 (587)
T PRK07431 135 GFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELAS 207 (587)
T ss_pred CCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHh
Confidence 85 33 244777764 8999999999999999999999999984 3689999999999998864
No 61
>PRK14557 pyrH uridylate kinase; Provisional
Probab=99.82 E-value=2.3e-18 Score=174.62 Aligned_cols=217 Identities=18% Similarity=0.192 Sum_probs=151.1
Q ss_pred CeEEEEeCCcccCCCC--------hHHHHHHHHHHHhCCCeEEEEECChHHH-hHHHHHcCCcccccCCccCCCHHHHHH
Q 007275 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQI-DKLLSERGHEAKYLGRYRITDSESLAA 170 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~--------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i-~~~l~~~g~~~~~~~g~rvt~~~~l~~ 170 (609)
+++||||||++|.+++ ++++++.|+.+.+.|+++|||||||... +...+++++ +...++.
T Consensus 5 ~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~~a~~~~~-----------~~~~~D~ 73 (247)
T PRK14557 5 KRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGI-----------DRVEADN 73 (247)
T ss_pred cEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHhcCC-----------ChHHHHH
Confidence 6899999999997732 6788999998888999999999998633 344555543 2234566
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhhhHhc-CCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHh
Q 007275 171 AMEAAGGIRMMIEAKLSPGPPICNIRRH-GDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLD 249 (609)
Q Consensus 171 ~~~~~g~i~~~l~~~Ls~~~~~~~l~~~-G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~ 249 (609)
+.+...++|..+...+ |+.. +.. ++ +++.. .+......++...+...|+
T Consensus 74 ig~~g~~lna~ll~~~--------l~~~~~~~-----~~-------i~t~~----------~~~~~~~~~~~~~~~~~l~ 123 (247)
T PRK14557 74 IGTLGTIINSLMLRGV--------LTSKTNKE-----VR-------VMTSI----------PFNAVAEPYIRLRAVHHLD 123 (247)
T ss_pred HHHHHHHHHHHHHHHH--------HHhhhCCc-----ee-------EEecc----------ccccccchhhHHHHHHHHh
Confidence 6666777777666542 3432 221 11 12211 1111122344455777799
Q ss_pred CCCeEEEcCC-ccCCCCcEEEecHHHHHHHHHHHcCCCEEEEE-ecccccC-------CCCccccccCHHHHHHHHHhhc
Q 007275 250 GGCLVILSNL-GYSSSGEVLNCNTYEVATACALAIEADKLICI-IDGPILD-------ESGHLIRFLTLQEADSLIRQRV 320 (609)
Q Consensus 250 ~G~IPVi~~~-~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiL-TDvdgv~-------~~~~lI~~it~~e~~~l~~~~~ 320 (609)
.|.|||+.+. +. -.+++|.+|+++|.+++||.|+++ |||||++ |++++|++++..|+. ..+.
T Consensus 124 ~g~VvV~~G~~g~------~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~---~~~~ 194 (247)
T PRK14557 124 NGYIVIFGGGNGQ------PFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVV---RQNI 194 (247)
T ss_pred CCCEEEEECCcCC------CccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhc---ccCH
Confidence 9999999874 32 245689999999999999999999 5999983 468999999976542 1110
Q ss_pred hhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCC
Q 007275 321 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 400 (609)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m 400 (609)
. -|
T Consensus 195 ---------------------------------------------------------~--------------------~~ 197 (247)
T PRK14557 195 ---------------------------------------------------------Q--------------------VM 197 (247)
T ss_pred ---------------------------------------------------------H--------------------HH
Confidence 0 03
Q ss_pred HHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccccccc
Q 007275 401 LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (609)
Q Consensus 401 ~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~d~ 447 (609)
. ..|+..|.+.|++ ++|+||..++. |..++.++..||.|.+..
T Consensus 198 ~--~~A~~~a~~~gi~-v~I~ng~~~~~-l~~~l~g~~~GT~i~~~~ 240 (247)
T PRK14557 198 D--QAALLLARDYNLP-AHVFNFDEPGV-MRRICLGEHVGTLINDDA 240 (247)
T ss_pred H--HHHHHHHHHCCCc-EEEEeCCCChH-HHHHHcCCCCcEEEecCc
Confidence 2 3477778889997 99999999985 566778888999998643
No 62
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.81 E-value=7.1e-19 Score=173.62 Aligned_cols=149 Identities=19% Similarity=0.195 Sum_probs=107.7
Q ss_pred EEEeCCcccCCCChHHHHHHHHHHHhCCCeEEEEECChHHHhHHHH---HcCCcccccCCccCCCHHHHHHHHHHHHHHH
Q 007275 103 VVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLS---ERGHEAKYLGRYRITDSESLAAAMEAAGGIR 179 (609)
Q Consensus 103 VIKlGGsvl~~~~l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~---~~g~~~~~~~g~rvt~~~~l~~~~~~~g~i~ 179 (609)
|||||||.+.+ +..+.+.|..+. |++++||.|||++++.+.. ++|+ +....+...+++..+|
T Consensus 1 vvKiGGsl~~~--~~~~~~~l~~~~--~~~v~iV~GGG~~A~~~r~~~~~~g~-----------~~~~ad~mgilat~~n 65 (203)
T cd04240 1 VVKIGGSLIRE--AVRLLRWLKTLS--GGGVVIVPGGGPFADVVRRYQERKGL-----------SDAAAHWMAILAMEQY 65 (203)
T ss_pred CEEEccccccc--HHHHHHHHHhcc--CCCEEEEcCCcHHHHHHHHHHHHcCC-----------ChHHHHHHHHHHHHHH
Confidence 79999999855 566666665553 8999999999999665543 3343 3334444444444555
Q ss_pred HHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEEEcCC
Q 007275 180 MMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL 259 (609)
Q Consensus 180 ~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi~~~ 259 (609)
..+.+... ...+ .-+...+.+++..|.|||+.|.
T Consensus 66 a~~l~~~~--------~~~~--------------------------------------~~~~~~~~~~~~~g~ipV~~P~ 99 (203)
T cd04240 66 GYLLADLE--------PRLV--------------------------------------ARTLAELTDVLERGKIAILLPY 99 (203)
T ss_pred HHHHhccC--------Cccc--------------------------------------cCCHHHHHHHHHCCCcEEEeCc
Confidence 44433210 0000 0124578889999999999998
Q ss_pred cc----CCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-CCCccccccCHHHH
Q 007275 260 GY----SSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEA 312 (609)
Q Consensus 260 ~~----~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-~~~~lI~~it~~e~ 312 (609)
.. +..++.+|+|+|.+|+++|.+|+|++||++|||||++ .++++|++++.+|+
T Consensus 100 ~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~da~~i~~i~~~e~ 157 (203)
T cd04240 100 RLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKDGKLVNEIAAAEL 157 (203)
T ss_pred hhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCCCcCccccCHHHh
Confidence 65 4567789999999999999999999999999999986 46899999987654
No 63
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.80 E-value=1.3e-18 Score=191.47 Aligned_cols=197 Identities=17% Similarity=0.188 Sum_probs=147.3
Q ss_pred eEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCc-------------------
Q 007275 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRY------------------- 160 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~------------------- 160 (609)
++|+|+||+.+.+.. +.++++.|......|+++|+|||+++.+...|.++.....+..+.
T Consensus 2 ~~V~KFGGssv~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 81 (441)
T TIGR00657 2 LIVQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIEILERLIP 81 (441)
T ss_pred CEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhh
Confidence 589999999998865 788888888777789999999999888888876665433322110
Q ss_pred --------cCCCHH--------HHHHHHHHHH-HHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecC
Q 007275 161 --------RITDSE--------SLAAAMEAAG-GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKG 223 (609)
Q Consensus 161 --------rvt~~~--------~l~~~~~~~g-~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~ 223 (609)
+.++.. ..+. ..+.| .++..++.. .|+++|++ ++++++.+..+++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~-ils~GE~~s~~l~~~--------~l~~~Gi~----a~~l~~~~~~l~t~~~-- 146 (441)
T TIGR00657 82 QAIAEELKRLLDAELVLEEKPREMDR-ILSFGERLSAALLSA--------ALEELGVK----AVSLLGGEAGILTDSN-- 146 (441)
T ss_pred HHHHHHHHHHHHHHHhhhcCcchHhh-eecHHHHHHHHHHHH--------HHHhCCCC----CEEEEcCcceEEecCC--
Confidence 000000 0011 12234 445544443 57899988 8999999887777543
Q ss_pred cccCcCCcceeeEeeeCHHHHHHHHhCCCeEEEcCC-ccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEecccccC-
Q 007275 224 VVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD- 298 (609)
Q Consensus 224 ~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi~~~-~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv~- 298 (609)
++....+..++.+.|+.+|+.|.|||+++. +.+..|++.++ ++|.+|+.+|.+|+||+|+++|||||++
T Consensus 147 ------~~~~~~~~~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~ 220 (441)
T TIGR00657 147 ------FGRARVIIEILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYT 220 (441)
T ss_pred ------CCceeecHhhhHHHHHHHHhcCCEEEEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCc
Confidence 332334667889999999999999999994 66778888876 7999999999999999999999999984
Q ss_pred ------CCCccccccCHHHHHHHHHh
Q 007275 299 ------ESGHLIRFLTLQEADSLIRQ 318 (609)
Q Consensus 299 ------~~~~lI~~it~~e~~~l~~~ 318 (609)
+++++|++++.+|+.++...
T Consensus 221 ~DP~~~~~a~~i~~is~~ea~el~~~ 246 (441)
T TIGR00657 221 TDPRIVPDARRIDEISYEEMLELASF 246 (441)
T ss_pred CCCCCCCCCeECCccCHHHHHHHHhc
Confidence 36899999999999988643
No 64
>PRK14556 pyrH uridylate kinase; Provisional
Probab=99.77 E-value=4.2e-17 Score=164.15 Aligned_cols=218 Identities=19% Similarity=0.184 Sum_probs=152.4
Q ss_pred CeEEEEeCCcccCCCC--------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccCCccCCCHHHHHHH
Q 007275 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~--------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~ 171 (609)
|++|+||+|++|..++ +..++++|+.+.+.|+++.||.|||....-...+.+. | .+....|.+
T Consensus 16 ~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~------~---~~r~~~D~~ 86 (249)
T PRK14556 16 KRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGN------K---IRRATADSM 86 (249)
T ss_pred CEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccC------C---CchhhhhHH
Confidence 7899999999997542 6789999999999999999999999876532222110 1 234455666
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCC
Q 007275 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (609)
Q Consensus 172 ~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G 251 (609)
-+++..+|..+.+. .|.+.|+++ .-++..... +.....+.+.+.+.|+.|
T Consensus 87 GmlaT~iNal~l~~--------~l~~~~~~~----~v~sa~~~~------------------~~~e~~~~~~~~~~l~~g 136 (249)
T PRK14556 87 GMIATMINALALRD--------MLISEGVDA----EVFSAKGVD------------------GLLKVASAHEFNQELAKG 136 (249)
T ss_pred HHHHHHHHHHHHHH--------HHHHcCCCe----EEeeccccC------------------cCCCCCCHHHHHHHHhCC
Confidence 66777888765544 467788762 222222110 011123566788899999
Q ss_pred CeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHHhhchhhh
Q 007275 252 CLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSE 324 (609)
Q Consensus 252 ~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~~~~~~~~ 324 (609)
.|||+.+.. | .-++++|.+|+++|..++||.|+++|||||++ |++++|++++..|.... +..
T Consensus 137 ~vvi~~gg~----G-~p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~---~l~--- 205 (249)
T PRK14556 137 RVLIFAGGT----G-NPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSK---ELN--- 205 (249)
T ss_pred CEEEEECCC----C-CCcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhccc---chH---
Confidence 999976531 1 12566899999999999999999999999984 35788888876553221 000
Q ss_pred hHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCHHHH
Q 007275 325 IAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSEL 404 (609)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~~kl 404 (609)
- | ..
T Consensus 206 -----------------------------------------------------v---------------------m--d~ 209 (249)
T PRK14556 206 -----------------------------------------------------V---------------------M--DL 209 (249)
T ss_pred -----------------------------------------------------h---------------------H--HH
Confidence 0 2 24
Q ss_pred HHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccccc
Q 007275 405 AAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (609)
Q Consensus 405 ~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~ 445 (609)
.|+..+.++|++ ++|+|+..++. |..++.++..||.|.-
T Consensus 210 ~A~~~a~~~gIp-i~I~ng~~~~~-L~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 210 GAFTQCRDFGIP-IYVFDLTQPNA-LVDAVLDSKYGTWVTL 248 (249)
T ss_pred HHHHHHHHCCCc-EEEECCCCchH-HHHHHcCCCCceEEEe
Confidence 577777899998 99999999985 5556677889999864
No 65
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.69 E-value=5.4e-16 Score=161.68 Aligned_cols=200 Identities=16% Similarity=0.132 Sum_probs=129.9
Q ss_pred eEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCccc------c---c-----------CC
Q 007275 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK------Y---L-----------GR 159 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~------~---~-----------~g 159 (609)
++|.|+||+.+.+++ +.++++-|... ..+.++|+|.++-..+...|.++..... + . ..
T Consensus 1 ~~V~KFGGtSv~~~~~~~~v~~iI~~~-~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~~~~~~~~~l~~i~~~h~~~~~~ 79 (298)
T cd04244 1 RLVMKFGGTSVGSAERIRHVADLVGTY-AEGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIAGVKDFIEILRLRHIKAAKE 79 (298)
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 479999999998754 66666666544 4578899999975445555433221100 0 0 00
Q ss_pred c---------------------------c---CCCHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEE
Q 007275 160 Y---------------------------R---ITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGV 209 (609)
Q Consensus 160 ~---------------------------r---vt~~~~l~~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l 209 (609)
+ . ..++...+.+......++..+.+. .|+++|++ +..+
T Consensus 80 l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~--------~L~~~Gi~----a~~l 147 (298)
T cd04244 80 AISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSA--------ALRSLGIK----ARAL 147 (298)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHH--------HHHhCCCC----eEEE
Confidence 0 0 000011111112222334444444 57899988 8888
Q ss_pred eecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEEEcCC-ccCCCCcEEEe---cHHHHHHHHHHHcCC
Q 007275 210 SVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEA 285 (609)
Q Consensus 210 ~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi~~~-~~~~~ge~~~i---d~D~lAa~lA~~L~A 285 (609)
++.+..+++....+ +. ....+....++. .+..+++.|.|||+++. +.+..|++.++ ++|.+|+.+|.+|+|
T Consensus 148 ~~~~~~i~t~~~~~--~a--~~~~~~~~~i~~-~l~~ll~~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~a 222 (298)
T cd04244 148 DGGEAGIITDDNFG--NA--RPLPATYERVRK-RLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDA 222 (298)
T ss_pred cHHHcceeecCccc--cc--ccchhHHHHHHH-HHHHHhhcCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcCC
Confidence 88887666644321 00 000122223333 35578899999999994 77788998888 999999999999999
Q ss_pred CEEEEEecccccC---C----CCccccccCHHHHHHHHHh
Q 007275 286 DKLICIIDGPILD---E----SGHLIRFLTLQEADSLIRQ 318 (609)
Q Consensus 286 d~LIiLTDvdgv~---~----~~~lI~~it~~e~~~l~~~ 318 (609)
+.|+++|||||++ | ++++|++++.+|+.++...
T Consensus 223 ~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~ 262 (298)
T cd04244 223 DEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAYF 262 (298)
T ss_pred CEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHhC
Confidence 9999999999984 3 6899999999999998643
No 66
>PRK06291 aspartate kinase; Provisional
Probab=99.65 E-value=3.7e-15 Score=164.92 Aligned_cols=196 Identities=15% Similarity=0.145 Sum_probs=131.1
Q ss_pred eEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCccc-------c----------------
Q 007275 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK-------Y---------------- 156 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~-------~---------------- 156 (609)
++|.|+||+.+.+.+ ++++++-|......|.++|+|.++-..+...|.++..... +
T Consensus 2 ~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (465)
T PRK06291 2 RLVMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVRDIAKVKDFIADLRERHYKAIE 81 (465)
T ss_pred cEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 479999999998855 6777776665555788899999875444444322210000 0
Q ss_pred --c------------------------CCc---cCCCHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeE
Q 007275 157 --L------------------------GRY---RITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEV 207 (609)
Q Consensus 157 --~------------------------~g~---rvt~~~~l~~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av 207 (609)
. .+. +-.++...+.+......++..+... .|+++|++ +.
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~--------~L~~~Gi~----a~ 149 (465)
T PRK06291 82 EAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSG--------ALRDLGIK----SV 149 (465)
T ss_pred HhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHH--------HHHhCCCC----eE
Confidence 0 000 0001122222222223344555444 47889988 88
Q ss_pred EEeecCCceeeeeecCcccCcCCcceeeEe---eeCHHHHHHHHhCCCeEEEcCC-ccCCCCcEEEe---cHHHHHHHHH
Q 007275 208 GVSVASGNFLAAKRKGVVDGVDYGATGEVK---KVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACA 280 (609)
Q Consensus 208 ~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~---~v~~~~I~~LL~~G~IPVi~~~-~~~~~ge~~~i---d~D~lAa~lA 280 (609)
.+++.+..+++.... +..+... ..-.+.++.+++.|.|||+++. +.+.+|++.++ ++|.+|+.+|
T Consensus 150 ~l~~~~~~i~t~~~~--------~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A 221 (465)
T PRK06291 150 ALTGGEAGIITDSNF--------GNARPLPKTYERVKERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIG 221 (465)
T ss_pred EEchHHCcEEecCCC--------CceeechhhHHHHHHHHHHHhhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHH
Confidence 888888777775432 2222110 0012468888999999999994 77788998888 9999999999
Q ss_pred HHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHH
Q 007275 281 LAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLI 316 (609)
Q Consensus 281 ~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~ 316 (609)
.+|+||.|+++|||||++ |++++|++++.+|+.++.
T Consensus 222 ~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~ 264 (465)
T PRK06291 222 AALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELS 264 (465)
T ss_pred HhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHH
Confidence 999999999999999984 368999999999988875
No 67
>PRK08373 aspartate kinase; Validated
Probab=99.65 E-value=1.9e-14 Score=151.97 Aligned_cols=195 Identities=16% Similarity=0.127 Sum_probs=130.5
Q ss_pred cCCeEEEEeCCcccCCCChHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCccc----------------------
Q 007275 98 RGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK---------------------- 155 (609)
Q Consensus 98 ~~k~iVIKlGGsvl~~~~l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~---------------------- 155 (609)
.++++|.|+||+.+.+ .++++++-|... ..|.++|+|.++...+...|.++.....
T Consensus 2 ~~~m~V~KFGGsSv~~-~~~~v~~ii~~~-~~~~~vvVVVSA~~gvTd~L~~l~~~~~~~~l~~i~~~h~~~~~~L~~~~ 79 (341)
T PRK08373 2 VEKMIVVKFGGSSVRY-DFEEALELVKYL-SEENEVVVVVSALKGVTDKLLKLAETFDKEALEEIEEIHEEFAKRLGIDL 79 (341)
T ss_pred CCCCEEEEECCcchHh-HHHHHHHHHHHH-hcCCCEEEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccch
Confidence 4678999999999977 466666666533 4588999999986556555433311100
Q ss_pred -c--------cCCc-cCCCHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcc
Q 007275 156 -Y--------LGRY-RITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVV 225 (609)
Q Consensus 156 -~--------~~g~-rvt~~~~l~~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~ 225 (609)
. .+.. ...+...++.+.....+++..+.+. .|+++|++ +..+++.+- +.+ ..
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~D~ils~GE~lSa~lla~--------~L~~~Gi~----a~~l~~~~~-i~t-~~---- 141 (341)
T PRK08373 80 EILSPYLKKLFNSRPDLPSEALRDYILSFGERLSAVLFAE--------ALENEGIK----GKVVDPWEI-LEA-KG---- 141 (341)
T ss_pred hhHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHH--------HHHHCCCc----eEEEeHHHh-eee-cC----
Confidence 0 0000 1112333455555555566666665 47899988 555554432 221 11
Q ss_pred cCcCCcceeeE----eeeCHHHHHHHHhCCCeEEEcCCccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEecccccC
Q 007275 226 DGVDYGATGEV----KKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD 298 (609)
Q Consensus 226 ~~~d~g~~G~v----~~v~~~~I~~LL~~G~IPVi~~~~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv~ 298 (609)
+++. ..+ ...+.+.+..+|+.|.|||+++...+.+|.+.++ ++|.+|+.+|.+|+||.++|+|||||++
T Consensus 142 ---~~~~-a~i~~~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVy 217 (341)
T PRK08373 142 ---SFGN-AFIDIKKSKRNVKILYELLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIY 217 (341)
T ss_pred ---Cccc-eeechhhhhhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccC
Confidence 1111 111 2356688999999999999999755666776654 7999999999999999999999999984
Q ss_pred -------CCCccccccCHHHHHHHH
Q 007275 299 -------ESGHLIRFLTLQEADSLI 316 (609)
Q Consensus 299 -------~~~~lI~~it~~e~~~l~ 316 (609)
|++++|++++.+|+.++.
T Consensus 218 taDP~~v~~A~~i~~isy~Ea~ela 242 (341)
T PRK08373 218 TADPKLVPSARLIPYLSYDEALIAA 242 (341)
T ss_pred CCCCCCCCCCeEcccCCHHHHHHHH
Confidence 358899999999998764
No 68
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.63 E-value=5e-14 Score=138.52 Aligned_cols=217 Identities=20% Similarity=0.178 Sum_probs=154.2
Q ss_pred cCCeEEEEeCCcccCCCC--------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHc-CCcccccCCccCCCHHHH
Q 007275 98 RGGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSER-GHEAKYLGRYRITDSESL 168 (609)
Q Consensus 98 ~~k~iVIKlGGsvl~~~~--------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~-g~~~~~~~g~rvt~~~~l 168 (609)
+-+++|+||||++|..++ +++++++|+.+.+.|.+|.||.|||....-..... |+ +....
T Consensus 4 ~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~-----------~r~~~ 72 (238)
T COG0528 4 KYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGM-----------DRVTA 72 (238)
T ss_pred ceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCC-----------chhhh
Confidence 347999999999997632 68899999999999999999999987665443322 22 44456
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHH
Q 007275 169 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERL 248 (609)
Q Consensus 169 ~~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL 248 (609)
+..-+++..+|..+.+. .|.+.|++++ .++...-..+ ....+.....+.|
T Consensus 73 D~mGmlaTvmNal~L~~--------aL~~~~~~~~----v~sai~~~~~------------------~e~~~~~~A~~~l 122 (238)
T COG0528 73 DYMGMLATVMNALALQD--------ALERLGVDTR----VQSAIAMPQV------------------AEPYSRREAIRHL 122 (238)
T ss_pred hHHHHHHHHHHHHHHHH--------HHHhcCCcce----ecccccCccc------------------cCccCHHHHHHHH
Confidence 66666777788765554 4677888732 2222211110 1123455677788
Q ss_pred hCCCeEEEcCCccCCCCcEEEecHHHHHHHHHHHcCCCEEEEEec-cccc-------CCCCccccccCHHHHHHHHHhhc
Q 007275 249 DGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPIL-------DESGHLIRFLTLQEADSLIRQRV 320 (609)
Q Consensus 249 ~~G~IPVi~~~~~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTD-vdgv-------~~~~~lI~~it~~e~~~l~~~~~ 320 (609)
+.|-|||.++--..+ .-.+|++|++.|..++||.|+..|+ |||+ |||++.+++||.+|+.+....
T Consensus 123 ~~grVvIf~gGtg~P-----~fTTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~-- 195 (238)
T COG0528 123 EKGRVVIFGGGTGNP-----GFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLK-- 195 (238)
T ss_pred HcCCEEEEeCCCCCC-----CCchHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhcCe--
Confidence 999999998631111 2356999999999999999999995 9998 367999999999887665211
Q ss_pred hhhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCC
Q 007275 321 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 400 (609)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m 400 (609)
+ |
T Consensus 196 -----------------------------v-------------------------------------------------m 197 (238)
T COG0528 196 -----------------------------V-------------------------------------------------M 197 (238)
T ss_pred -----------------------------e-------------------------------------------------e
Confidence 0 2
Q ss_pred HHHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCccccc
Q 007275 401 LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (609)
Q Consensus 401 ~~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~ 444 (609)
- ..|...+-+++++ ++++|...+++ |..++.++..||.|.
T Consensus 198 D--~tA~~l~~~~~i~-i~Vfn~~~~~~-l~~~~~ge~~gT~V~ 237 (238)
T COG0528 198 D--PTAFSLARDNGIP-IIVFNINKPGN-LKRALKGEEVGTIVE 237 (238)
T ss_pred c--HHHHHHHHHcCCc-EEEEeCCCCcc-HHHHHcCCCCceEec
Confidence 1 3455666778887 99999999997 566667889999885
No 69
>PRK07757 acetyltransferase; Provisional
Probab=99.60 E-value=2.6e-14 Score=133.81 Aligned_cols=129 Identities=33% Similarity=0.596 Sum_probs=110.2
Q ss_pred cccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhcCeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCC
Q 007275 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 528 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~Rgq 528 (609)
..||+++.+|++.+.++...........+.+.+.+..++..++++..+++++|++.+... ....++|..++|+|+|||+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~lvG~~~l~~~-~~~~~~i~~v~V~p~~rg~ 80 (152)
T PRK07757 2 MEIRKARLSDVKAIHALINVYAKKGLMLPRSLDELYENIRDFYVAEEEGEIVGCCALHIL-WEDLAEIRSLAVSEDYRGQ 80 (152)
T ss_pred ceEeeCCcccHHHHHHHHHHHHhcCCccCCCHHHHHhccCcEEEEEECCEEEEEEEEEec-cCCceEEEEEEECHHHcCC
Confidence 369999999999999998876655555566777777888888899999999999999843 3456789999999999999
Q ss_pred cHHHHHHHHHHHHHHHCCCCEEEEEeHHHHHHHHHCCCeEeeeecchhHhh
Q 007275 529 GQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERR 579 (609)
Q Consensus 529 GiG~~LL~~l~~~A~~~G~~~I~l~t~~a~~fYek~GF~~~~~~~lp~~~~ 579 (609)
|+|++||+.++++|++.|+..+.+.+ .+.+||+|+||+..+...+++..+
T Consensus 81 Glg~~Ll~~l~~~a~~~g~~~i~~~~-~~~~~Y~k~GF~~~~~~~~~~~~~ 130 (152)
T PRK07757 81 GIGRMLVEACLEEARELGVKRVFALT-YQPEFFEKLGFREVDKEALPQKVW 130 (152)
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEEe-CcHHHHHHCCCEEcccccCChhHH
Confidence 99999999999999999999987766 467899999999999988886544
No 70
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.57 E-value=1.7e-14 Score=133.26 Aligned_cols=123 Identities=21% Similarity=0.302 Sum_probs=96.0
Q ss_pred cccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhc----CeEEEEEECCEEEEEEEEEEecC----CCeEEEEEEE
Q 007275 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFK----EKCGEVAAIG 520 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i----~~~~V~~~dg~IVG~~~l~~~~~----~~~~eI~~ia 520 (609)
..||+++.+|++.+.+++.......+......+.+...+ ..+++++.++++||++.+...+. ...++|..++
T Consensus 4 ~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~ 83 (144)
T PRK10146 4 CELRPATQYDTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELV 83 (144)
T ss_pred cEEeeCcHhhHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccchhheeheeE
Confidence 468999999999999998765543332211122333332 35778888999999999874221 2246799999
Q ss_pred EcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeee
Q 007275 521 VSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 571 (609)
Q Consensus 521 V~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~ 571 (609)
|+|+|||+|+|+.||+.++++|++.|++.+.+.+ .++++||+++||+..+.
T Consensus 84 v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~~ 138 (144)
T PRK10146 84 VMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHF 138 (144)
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhhh
Confidence 9999999999999999999999999999999987 38999999999987643
No 71
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.57 E-value=1.9e-13 Score=149.19 Aligned_cols=199 Identities=15% Similarity=0.123 Sum_probs=139.3
Q ss_pred eEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCC---------------------cccc--
Q 007275 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGH---------------------EAKY-- 156 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~---------------------~~~~-- 156 (609)
++|.|+||+.+.+.+ +.+.++-|+...+.|.+||+|.+++.-+...|-++-- ....
T Consensus 3 ~iV~KFGGTSva~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~el~~~~~~ 82 (447)
T COG0527 3 LIVQKFGGTSVADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIASELILDPFI 82 (447)
T ss_pred eEEEEeCCcccCCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHHHHhhcchh
Confidence 799999999998755 7888888888777899999999987633333322211 0000
Q ss_pred cC-----------------CccCCCHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeee
Q 007275 157 LG-----------------RYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAA 219 (609)
Q Consensus 157 ~~-----------------g~rvt~~~~l~~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~a 219 (609)
.. -....++..++.+.....+++..|.+. .|+..|++ +..+++.+..+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~--------~L~~~Gv~----A~~~~~~~~~i~t~ 150 (447)
T COG0527 83 AARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAA--------ALNALGVD----ARSLDGRQAGIATD 150 (447)
T ss_pred hhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHH--------HHHhCCCc----eEEEchHHceeeec
Confidence 00 001124445555554455566666665 58899987 66665554444432
Q ss_pred eecCcccCcCCcceeeEeeeCHHH-HHHHHhCCCeEEEcCC-ccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEecc
Q 007275 220 KRKGVVDGVDYGATGEVKKVDVTR-MRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDG 294 (609)
Q Consensus 220 k~~~~~~~~d~g~~G~v~~v~~~~-I~~LL~~G~IPVi~~~-~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDv 294 (609)
.. ++ ...+...+.+. +..+++.+.|||+++. +.+.+|++..+ -+|..|+.||.+|+||.+-|.|||
T Consensus 151 ~~--------~~-~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDV 221 (447)
T COG0527 151 SN--------HG-NARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDV 221 (447)
T ss_pred Cc--------cc-ccccchhhhhhhHHHHhcCCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECC
Confidence 21 11 22233345556 8889999999999995 67778887754 489999999999999999999999
Q ss_pred cccC-------CCCccccccCHHHHHHHHHhhc
Q 007275 295 PILD-------ESGHLIRFLTLQEADSLIRQRV 320 (609)
Q Consensus 295 dgv~-------~~~~lI~~it~~e~~~l~~~~~ 320 (609)
||++ |++++|+.|+.+|+.+|..-|+
T Consensus 222 dGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GA 254 (447)
T COG0527 222 DGVYTADPRIVPDARLLPEISYEEALELAYLGA 254 (447)
T ss_pred CCCccCCCCCCCcceEcCccCHHHHHHHHHCCc
Confidence 9983 5799999999999999976543
No 72
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.53 E-value=1.3e-13 Score=132.39 Aligned_cols=124 Identities=28% Similarity=0.567 Sum_probs=100.6
Q ss_pred ccccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhcCeEEEEE-ECCEEEEEEEEEEecCCCeEEEEEEEEcccCc
Q 007275 448 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVE-REGQIIACAALFPFFKEKCGEVAAIGVSPECR 526 (609)
Q Consensus 448 ~~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i~~~~V~~-~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~R 526 (609)
.+.+|+++++|.+.+..+++...............+..+...+++++ .+++++|++.+...+ .+.++|..++|+|+||
T Consensus 5 ~i~iR~a~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~iiG~~~~~~~~-~~~~~i~~l~V~p~~r 83 (169)
T PRK07922 5 AITVRRARTSDVPAIKRLVDPYAQGRILLEKNLVTLYEAVQEFWVAEHLDGEVVGCGALHVMW-EDLAEIRTVAVDPAAR 83 (169)
T ss_pred CceeecCCHhhHHHHHHHHHHHhhcCccccchHHHHHhhcCcEEEEEecCCcEEEEEEEeecC-CCceEEEEEEECHHHh
Confidence 35799999999999999988765443333333444445556778887 899999999887543 4578899999999999
Q ss_pred CCcHHHHHHHHHHHHHHHCCCCEEEEEeHHHHHHHHHCCCeEeeeec
Q 007275 527 GQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEM 573 (609)
Q Consensus 527 gqGiG~~LL~~l~~~A~~~G~~~I~l~t~~a~~fYek~GF~~~~~~~ 573 (609)
|+|+|++||++++++|++.|++++++.+. +.+||+|+||+..+...
T Consensus 84 gkGiG~~Ll~~~~~~a~~~g~~~l~~~~~-~~~fY~k~GF~~~~~~~ 129 (169)
T PRK07922 84 GRGVGHAIVERLLDVARELGLSRVFVLTF-EVEFFARHGFVEIDGTP 129 (169)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEEec-cHHHHHHCCCEECcccc
Confidence 99999999999999999999999988764 57899999999986543
No 73
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.52 E-value=7.3e-13 Score=137.86 Aligned_cols=201 Identities=18% Similarity=0.160 Sum_probs=119.5
Q ss_pred EEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcc---cc---------------------
Q 007275 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA---KY--------------------- 156 (609)
Q Consensus 102 iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~---~~--------------------- 156 (609)
+|.|+||+.+.+.. ++++++-|..-.+.+.++|+|.++-..+...|.++-... ..
T Consensus 2 ~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~l~~i~~~~~~~~~~L~~~ 81 (295)
T cd04259 2 VVLKFGGTSVSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNLAEQLEVD 81 (295)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhh
Confidence 68999999998855 677777665433456778888886433433322111000 00
Q ss_pred ---------------cCCc---cCCCHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceee
Q 007275 157 ---------------LGRY---RITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLA 218 (609)
Q Consensus 157 ---------------~~g~---rvt~~~~l~~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ 218 (609)
..+. ...++...+.+......+...+.+. .|++.|++ +..+.+.+ ++.
T Consensus 82 ~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~--------~L~~~Gi~----a~~ld~~~--~i~ 147 (295)
T cd04259 82 ADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAA--------YLEAQGLK----VKWLDARE--LLT 147 (295)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHH--------HHHhCCCC----eEEEcHHH--hee
Confidence 0000 0012222233333333445555554 47888987 44444332 121
Q ss_pred eee-cCcccCcCCcceeeE-eeeCHHHHHHHHhC-CCeEEEcCC-ccCCCCcEEE---ecHHHHHHHHHHHcCCCEEEEE
Q 007275 219 AKR-KGVVDGVDYGATGEV-KKVDVTRMRERLDG-GCLVILSNL-GYSSSGEVLN---CNTYEVATACALAIEADKLICI 291 (609)
Q Consensus 219 ak~-~~~~~~~d~g~~G~v-~~v~~~~I~~LL~~-G~IPVi~~~-~~~~~ge~~~---id~D~lAa~lA~~L~Ad~LIiL 291 (609)
... .+. ...+|+. ..+ .......|.+.+.. +.|||+.+. +.+..|++.. .++|.+|+.+|.+|+||.|+++
T Consensus 148 ~~~~~~~-~~~~~~~-a~v~~~~~~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~ 225 (295)
T cd04259 148 ATPTLGG-ETMNYLS-ARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIW 225 (295)
T ss_pred ecccccc-ccccccc-ceehhhhhHHHHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEE
Confidence 111 000 0001111 111 12234567766665 679999996 6777888775 4799999999999999999999
Q ss_pred ecccccC-------CCCccccccCHHHHHHHHHh
Q 007275 292 IDGPILD-------ESGHLIRFLTLQEADSLIRQ 318 (609)
Q Consensus 292 TDvdgv~-------~~~~lI~~it~~e~~~l~~~ 318 (609)
|||||++ +++++|++++.+|+.++...
T Consensus 226 TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~ 259 (295)
T cd04259 226 TDVPGLFTANPHEVPHARLLKRLDYDEAQEIATM 259 (295)
T ss_pred ECCCccccCCCCCCCCCeEeceeCHHHHHHHHHc
Confidence 9999984 36899999999999988643
No 74
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.52 E-value=3.4e-13 Score=141.76 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=66.2
Q ss_pred eeCHHHHHHHHhCCCeEEEcCCccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEecccccC-------CCCcccccc
Q 007275 238 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFL 307 (609)
Q Consensus 238 ~v~~~~I~~LL~~G~IPVi~~~~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~i 307 (609)
..+.+.+..+++.|.|||+++...+.+|...++ ++|.+|+.+|.+|+||.++++|||||++ +++++|+.+
T Consensus 144 ~~~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~l 223 (327)
T TIGR02078 144 KRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYL 223 (327)
T ss_pred HhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEcccc
Confidence 456778889999999999998755666766654 7999999999999999999999999984 357899999
Q ss_pred CHHHHHHH
Q 007275 308 TLQEADSL 315 (609)
Q Consensus 308 t~~e~~~l 315 (609)
+.+|+.++
T Consensus 224 sy~Ea~el 231 (327)
T TIGR02078 224 SYEEIKIA 231 (327)
T ss_pred CHHHHHHH
Confidence 99988755
No 75
>PTZ00330 acetyltransferase; Provisional
Probab=99.50 E-value=3.9e-13 Score=124.56 Aligned_cols=124 Identities=24% Similarity=0.356 Sum_probs=92.6
Q ss_pred cccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhc------CeEEEEEECCEEEEEEEEEEec-----CCCeEEEE
Q 007275 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL------DSFYVVEREGQIIACAALFPFF-----KEKCGEVA 517 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i------~~~~V~~~dg~IVG~~~l~~~~-----~~~~~eI~ 517 (609)
+.||+++++|++.+.++++..........-..+.+.... ..+++.+.++++||++.+...+ ....++|.
T Consensus 7 ~~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~ 86 (147)
T PTZ00330 7 LELRDLEEGDLGSVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIE 86 (147)
T ss_pred EEEEEcccccHHHHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCCCceEEEE
Confidence 479999999999999998764332221111112222211 2345556789999999886322 11347899
Q ss_pred EEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe-HHHHHHHHHCCCeEeeee
Q 007275 518 AIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 518 ~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t-~~a~~fYek~GF~~~~~~ 572 (609)
.++|+|+|||+|+|++||++++++|++.++..+.+.+ ..+.+||+++||+.++..
T Consensus 87 ~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~k~GF~~~~~~ 142 (147)
T PTZ00330 87 DVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYKKLGFRACERQ 142 (147)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHHHCCCEEeceE
Confidence 9999999999999999999999999999999998887 478999999999987644
No 76
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.49 E-value=1.2e-12 Score=136.24 Aligned_cols=193 Identities=14% Similarity=0.119 Sum_probs=119.9
Q ss_pred EEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccccC-------------------Cc-
Q 007275 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG-------------------RY- 160 (609)
Q Consensus 102 iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~~~-------------------g~- 160 (609)
.|.|+||+.+.+.. +.++++-|.... .+.++|+|.++-..+...|.++.......+ .+
T Consensus 2 ~V~KFGGtSv~~~~~i~~v~~iI~~~~-~~~~~vvVvSA~~gvTd~L~~~~~~~~~~~~~~~~~l~~i~~~h~~~~~~l~ 80 (294)
T cd04257 2 KVLKFGGTSLANAERIRRVADIILNAA-KQEQVAVVVSAPGKVTDLLLELAELASSGDDAYEDILQELESKHLDLITELL 80 (294)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhh
Confidence 59999999998754 677777665433 467888888875556555443321100000 00
Q ss_pred -----------------------------cCCCHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEee
Q 007275 161 -----------------------------RITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSV 211 (609)
Q Consensus 161 -----------------------------rvt~~~~l~~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~ 211 (609)
+..++...+.+......+...+.+. .|++.|++ +..+++
T Consensus 81 ~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~--------~L~~~Gi~----a~~ld~ 148 (294)
T cd04257 81 SGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSA--------LLNQQGLD----AAWIDA 148 (294)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHH--------HHHhCCCC----eEEEch
Confidence 0000111111222222334444444 47888987 556555
Q ss_pred cCCceeeeeecCcccCcCCcceeeEe-eeCHHHHHHHHhC-CCeEEEcCC-ccCCCCcEEEe---cHHHHHHHHHHHcCC
Q 007275 212 ASGNFLAAKRKGVVDGVDYGATGEVK-KVDVTRMRERLDG-GCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEA 285 (609)
Q Consensus 212 ~d~~~l~ak~~~~~~~~d~g~~G~v~-~v~~~~I~~LL~~-G~IPVi~~~-~~~~~ge~~~i---d~D~lAa~lA~~L~A 285 (609)
.+. +.+.. +++. ..+. ......++.++.. +.|||+.+. +.+..|++..+ .+|.+|+.+|..|+|
T Consensus 149 ~~~-i~t~~--------~~~~-a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRGGSD~~A~~lA~~l~a 218 (294)
T cd04257 149 REL-IVTDG--------GYLN-AVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDA 218 (294)
T ss_pred HHe-eEecC--------CCCc-eEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCEEECCCCchHHHHHHHHHHhCC
Confidence 441 22211 1221 1221 1224567777776 899999996 55667887654 489999999999999
Q ss_pred CEEEEEecccccC-------CCCccccccCHHHHHHHHH
Q 007275 286 DKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (609)
Q Consensus 286 d~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~ 317 (609)
|.++++|||||++ |++++|+.++.+|+.++..
T Consensus 219 ~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~ 257 (294)
T cd04257 219 DQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSY 257 (294)
T ss_pred CEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHh
Confidence 9999999999983 4689999999999988854
No 77
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.48 E-value=3.6e-13 Score=153.92 Aligned_cols=134 Identities=29% Similarity=0.566 Sum_probs=112.5
Q ss_pred cccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhcCeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCC
Q 007275 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 528 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~Rgq 528 (609)
.+||+++.+|++.+.+++..+.......+++.+.+......++++++++++|||+.+... +...++|..++|+|+||||
T Consensus 464 m~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~Va~~~g~IVG~~~l~~~-~~~~~~I~~i~V~P~~rGk 542 (614)
T PRK12308 464 VKVRPARLTDIDAIEGMVAYWAGLGENLPRSRNELVRDIGSFAVAEHHGEVTGCASLYIY-DSGLAEIRSLGVEAGWQVQ 542 (614)
T ss_pred CEEEECCHHHHHHHHHHHHHHHhhhcccccCHHHHhcccCcEEEEEECCEEEEEEEEEEc-CCCeEEEEEEEECHHHcCC
Confidence 369999999999999998766544444556677777777788999999999999998743 3456899999999999999
Q ss_pred cHHHHHHHHHHHHHHHCCCCEEEEEeHHHHHHHHHCCCeEeeeecchhHhhhhccc
Q 007275 529 GQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINL 584 (609)
Q Consensus 529 GiG~~LL~~l~~~A~~~G~~~I~l~t~~a~~fYek~GF~~~~~~~lp~~~~~~y~~ 584 (609)
|+|++||++++++|++.|++.+++.+ .+..||+|+||+.++...+|......-+.
T Consensus 543 GIGk~Ll~~l~~~ak~~g~~~i~l~~-~a~~FYek~GF~~~~~~~~~~~~~~~~~~ 597 (614)
T PRK12308 543 GQGSALVQYLVEKARQMAIKKVFVLT-RVPEFFMKQGFSPTSKSLLPEKVLKDCDQ 597 (614)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEee-CcHHHHHHCCCEECCcccCChHHHHhhcc
Confidence 99999999999999999999998876 46799999999999999888666555543
No 78
>PRK03624 putative acetyltransferase; Provisional
Probab=99.44 E-value=1.7e-12 Score=118.16 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=93.1
Q ss_pred cccccCCcCCHHHHHHHHhhhHhhccCccCCH--HHHHhh----cCeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEc
Q 007275 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTD--EELLKA----LDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVS 522 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~--e~l~~~----i~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~ 522 (609)
..||+++.+|++.+.+++... +...++.. ..+... ...++++..++++||++.+.. ......+..++|+
T Consensus 3 ~~ir~~~~~d~~~i~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~--~~~~~~i~~i~v~ 77 (140)
T PRK03624 3 MEIRVFRQADFEAVIALWERC---DLTRPWNDPEMDIERKLNHDPSLFLVAEVGGEVVGTVMGGY--DGHRGWAYYLAVH 77 (140)
T ss_pred eEEEEcccccHHHHHHHHHhc---CCCcchhhHHHHHHHHhcCCCceEEEEEcCCcEEEEEEeec--cCCCceEEEEEEC
Confidence 569999999999999998765 22122211 112221 245778888899999998762 2344678889999
Q ss_pred ccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeeeec
Q 007275 523 PECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 573 (609)
Q Consensus 523 p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~~~ 573 (609)
|+|||+|+|++||+.+++++++.+++.+.+.+ .++.+||+|+||+..+...
T Consensus 78 p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~~ 132 (140)
T PRK03624 78 PDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDRIS 132 (140)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccEEe
Confidence 99999999999999999999999999998887 3789999999999876543
No 79
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.44 E-value=4.1e-12 Score=132.18 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=66.7
Q ss_pred HHHHHHHHhC-CCeEEEcCC-ccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccC
Q 007275 241 VTRMRERLDG-GCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLT 308 (609)
Q Consensus 241 ~~~I~~LL~~-G~IPVi~~~-~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it 308 (609)
.+.++.+++. +.|||+.+. +.+..|++..+ ++|.+|+.+|.+|+||.++++|||||++ +++++|+.++
T Consensus 168 ~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls 247 (293)
T cd04243 168 KERLAQLLAEHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELS 247 (293)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeC
Confidence 3468888887 899999996 56677887765 5899999999999999999999999983 4689999999
Q ss_pred HHHHHHHHHh
Q 007275 309 LQEADSLIRQ 318 (609)
Q Consensus 309 ~~e~~~l~~~ 318 (609)
.+|+.++...
T Consensus 248 ~~ea~~l~~~ 257 (293)
T cd04243 248 YDEAMELAYF 257 (293)
T ss_pred HHHHHHHHhC
Confidence 9999988654
No 80
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.43 E-value=2.1e-12 Score=132.93 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=98.3
Q ss_pred cccccCCcCCHHHHHHHHhhhHhhccCccC-CHHHHHhhc---CeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEccc
Q 007275 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRR-TDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 524 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~-~~e~l~~~i---~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~ 524 (609)
..||+++++|++.+.++++..... +..++ ..+.+...+ ..+|+++.++++||++.+........++|..++|+|+
T Consensus 116 ~~IR~a~~~D~~~l~~L~~~v~~~-~~~~~~~~~~l~~~~~~~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~ 194 (266)
T TIGR03827 116 FTLRIATEDDADAMAALYRKVFPT-YPFPIHDPAYLLETMKSNVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPE 194 (266)
T ss_pred eEEEECCHHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHhcCCcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHH
Confidence 469999999999999998875432 22222 223233332 4578888899999999875444556789999999999
Q ss_pred CcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 525 CRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 525 ~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
|||+|+|++||+.+++++++.|++.+++.+ .++..+|+|+||+.++..
T Consensus 195 yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l 246 (266)
T TIGR03827 195 YRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGTL 246 (266)
T ss_pred HcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccEE
Confidence 999999999999999999999999998877 367899999999998765
No 81
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.43 E-value=9.2e-13 Score=119.23 Aligned_cols=119 Identities=21% Similarity=0.370 Sum_probs=88.4
Q ss_pred ccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhh--cCeEEEEEECCEEEEEEEEEEec---CC---CeEEEEEEEE
Q 007275 450 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKA--LDSFYVVEREGQIIACAALFPFF---KE---KCGEVAAIGV 521 (609)
Q Consensus 450 ~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~--i~~~~V~~~dg~IVG~~~l~~~~---~~---~~~eI~~iaV 521 (609)
+||+++++|++++.++++..........+........ ...++++++|++|||++.+.+.. .+ ..+.|..++|
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v 80 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAFGDSESPPEIWEYFRNLYGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAV 80 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CceECCHHHHHHHHHHHHHHCCCCCCchhhhhhhhcccCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEE
Confidence 4899999999999999877554433222111111111 25788999999999999998641 11 4578999999
Q ss_pred cccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeHHHHHHHHHCCCeEe
Q 007275 522 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFREC 569 (609)
Q Consensus 522 ~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~~a~~fYek~GF~~~ 569 (609)
+|+|||||+|++||+.+++++++.|+..+++.+ ...+||+++||+.+
T Consensus 81 ~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~-~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 81 DPEYRGRGLGRQLMRALLERARERGVPFIFLFP-SSPPFYRRFGFEYA 127 (127)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE--SSHHHHHHTTEEEE
T ss_pred CHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec-CChhhhhcCCCEEC
Confidence 999999999999999999999999999888866 46899999999864
No 82
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.40 E-value=4.4e-12 Score=116.14 Aligned_cols=125 Identities=22% Similarity=0.267 Sum_probs=101.6
Q ss_pred cccccccCCcCCHHHHHHHHhhhHhh---ccCccCCHHHHHhhc------CeEEEEEE---CCEEEEEEEEEEecC----
Q 007275 447 LYEGTRTAKVTDLSGIKQIIQPLVES---GALVRRTDEELLKAL------DSFYVVER---EGQIIACAALFPFFK---- 510 (609)
Q Consensus 447 ~~~~IR~a~~~D~~~I~~L~~~~~~~---~~~~~~~~e~l~~~i------~~~~V~~~---dg~IVG~~~l~~~~~---- 510 (609)
+.+.||+++++|.+.|.+|++++... ......+.+.+.... ..++++.. ++.++|++.+++...
T Consensus 2 ~~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~ 81 (163)
T KOG3216|consen 2 DNIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLG 81 (163)
T ss_pred CceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeecccccccc
Confidence 45689999999999999999885443 344555666666642 34555554 789999999986443
Q ss_pred CCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeee
Q 007275 511 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 571 (609)
Q Consensus 511 ~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~ 571 (609)
....+|.+++|.|+|||+|+|++|++.+-+.|.+.|+.++...+ .+|+.||++.|++....
T Consensus 82 k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 82 KQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLKE 146 (163)
T ss_pred cceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCccccce
Confidence 25679999999999999999999999999999999999999988 49999999999997654
No 83
>PHA00673 acetyltransferase domain containing protein
Probab=99.39 E-value=4.5e-12 Score=118.84 Aligned_cols=121 Identities=22% Similarity=0.256 Sum_probs=92.0
Q ss_pred ccCCcCCHHHHHHHHhhhHhhcc----CccC-CH---HHHHhh-cCeEEEEEECCEEEEEEEEEEecC-----CCeEEEE
Q 007275 452 RTAKVTDLSGIKQIIQPLVESGA----LVRR-TD---EELLKA-LDSFYVVEREGQIIACAALFPFFK-----EKCGEVA 517 (609)
Q Consensus 452 R~a~~~D~~~I~~L~~~~~~~~~----~~~~-~~---e~l~~~-i~~~~V~~~dg~IVG~~~l~~~~~-----~~~~eI~ 517 (609)
--++.+|+|.|..|+.+...... ..+. .. +.+..+ ...++|++++|++|||+.+...+. ...+.|.
T Consensus 10 ~~A~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie 89 (154)
T PHA00673 10 AFAELADAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTE 89 (154)
T ss_pred hhccHhhHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEE
Confidence 34889999999999877211111 1111 11 112222 256788888999999998875432 2456899
Q ss_pred EEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeH---HHHHHHHHCCCeEeeee
Q 007275 518 AIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT---RTADWFKSRGFRECSIE 572 (609)
Q Consensus 518 ~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~---~a~~fYek~GF~~~~~~ 572 (609)
.++|+|++||||||++||++++++|+++||..+++..+ ++.+||.++|+++....
T Consensus 90 ~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~fy~~~g~~~~~~~ 147 (154)
T PHA00673 90 SIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQLLPAAGYRETNRT 147 (154)
T ss_pred EEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHHHHhCCchhhchh
Confidence 99999999999999999999999999999999999985 67999999999987554
No 84
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.39 E-value=5.6e-11 Score=123.24 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=85.0
Q ss_pred hhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEEEcCC-ccCCCCcEEEe--
Q 007275 194 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC-- 270 (609)
Q Consensus 194 ~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPVi~~~-~~~~~ge~~~i-- 270 (609)
.|++.|++ +..++..+-.+++... ++. ..+.....+.+.++++.+.|||+.+. +.+..|++..+
T Consensus 130 ~L~~~Gi~----a~~ld~~~~~i~t~~~--------~~~-a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLgR 196 (288)
T cd04245 130 YLNYQGID----ARYVIPKDAGLVVTDE--------PGN-AQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDIKTFSR 196 (288)
T ss_pred HHHHCCCC----eEEEcHHHCceeecCC--------ccc-cccchhhHHHHHHHHhCCCEEEEeCccccCCCCCEEEcCC
Confidence 47888987 5555544433333221 111 12223356788888899999999986 67788999888
Q ss_pred -cHHHHHHHHHHHcCCCEEEEEeccccc---C----CCCccccccCHHHHHHHHHh
Q 007275 271 -NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQ 318 (609)
Q Consensus 271 -d~D~lAa~lA~~L~Ad~LIiLTDvdgv---~----~~~~lI~~it~~e~~~l~~~ 318 (609)
.+|..|+.+|.+|+||.+.+.|||||+ | |+++.|++++.+|+.++...
T Consensus 197 ggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~ 252 (288)
T cd04245 197 GGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYA 252 (288)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHC
Confidence 899999999999999999999999998 3 57899999999999998644
No 85
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.38 E-value=8.9e-12 Score=110.72 Aligned_cols=103 Identities=31% Similarity=0.501 Sum_probs=81.1
Q ss_pred CHHHHHHHHhhhHhhccC-c--------cCCHHHHHhhc----CeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEccc
Q 007275 458 DLSGIKQIIQPLVESGAL-V--------RRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 524 (609)
Q Consensus 458 D~~~I~~L~~~~~~~~~~-~--------~~~~e~l~~~i----~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~ 524 (609)
|+++|.++++........ . ..+.+.+.+.+ ..+||++++++++||+.+. ...+|..++|+|+
T Consensus 1 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~-----~~~~i~~l~v~p~ 75 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE-----PDGEISHLYVLPE 75 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHHHCTCCCEEEEEEETTEEEEEEEEE-----TCEEEEEEEE-GG
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHHHHhcCCEEEEEEECCEEEEEEEEc-----CCCeEEEEEEChh
Confidence 788888888875554321 1 13455555554 3689999999999999986 2345999999999
Q ss_pred CcCCcHHHHHHHHHHHHHHHCCCCEEEEEe-HHHHHHHHHCCC
Q 007275 525 CRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGF 566 (609)
Q Consensus 525 ~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t-~~a~~fYek~GF 566 (609)
|||+|+|++|++.++++++. +++.+.+.. ..+.+||+++||
T Consensus 76 ~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 76 YRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRKLGF 117 (117)
T ss_dssp GTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHHTT-
T ss_pred hcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHhCCC
Confidence 99999999999999999977 999988887 478999999998
No 86
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.38 E-value=1.2e-11 Score=116.33 Aligned_cols=123 Identities=16% Similarity=0.167 Sum_probs=93.1
Q ss_pred cccccCCcCCHHHHHHHHhhhHhhc---cCccCCHHHHHhhc-----CeEEEEEECCEEEEEEEEEEecC---CCeEEEE
Q 007275 449 EGTRTAKVTDLSGIKQIIQPLVESG---ALVRRTDEELLKAL-----DSFYVVEREGQIIACAALFPFFK---EKCGEVA 517 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~~~~~---~~~~~~~e~l~~~i-----~~~~V~~~dg~IVG~~~l~~~~~---~~~~eI~ 517 (609)
+.||+++.+|++.+.++..+..... .....+.+.+...+ ..+++++.++++||++++..... ...+++
T Consensus 4 i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~- 82 (162)
T PRK10140 4 IVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADF- 82 (162)
T ss_pred cEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEecccccccceEEEE-
Confidence 4699999999999999987532111 11223344444433 24577788999999999974322 223455
Q ss_pred EEEEcccCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 518 AIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 518 ~iaV~p~~RgqGiG~~LL~~l~~~A~~-~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
.++|+|+|||+|+|++||+.+++++++ .++.++.+.+ .++.+||+++||+..+..
T Consensus 83 ~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~ 142 (162)
T PRK10140 83 GICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTG 142 (162)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeec
Confidence 599999999999999999999999988 6999988877 488999999999998764
No 87
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.38 E-value=6.4e-12 Score=122.83 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=94.8
Q ss_pred ccccccccCCcCCHHHHHHHHhhhHh-hccCccCC-HH----HHHh----hc----Ce--EEEEEECCEEEEEEEEEEec
Q 007275 446 DLYEGTRTAKVTDLSGIKQIIQPLVE-SGALVRRT-DE----ELLK----AL----DS--FYVVEREGQIIACAALFPFF 509 (609)
Q Consensus 446 d~~~~IR~a~~~D~~~I~~L~~~~~~-~~~~~~~~-~e----~l~~----~i----~~--~~V~~~dg~IVG~~~l~~~~ 509 (609)
++...||+++.+|.+.+.++++.... ..+..++. .+ .+.. +. .. +++.+.++++||++.+....
T Consensus 41 ~~~~~lR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~ 120 (191)
T TIGR02382 41 TSDPGARVATETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELN 120 (191)
T ss_pred CCCCcceeCChhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecC
Confidence 33457999999999999999887632 22222221 11 1111 11 11 23445688999999987543
Q ss_pred CCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 510 KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 510 ~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
...++|..++|+|+|||+|+|++|++.++++|+++|+.+|.+.+ ..+.+||+|+||+..+..
T Consensus 121 -~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~ 186 (191)
T TIGR02382 121 -DTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIESTA 186 (191)
T ss_pred -CCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccccce
Confidence 34678999999999999999999999999999999999999987 378999999999987654
No 88
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.37 E-value=5.7e-12 Score=117.63 Aligned_cols=121 Identities=25% Similarity=0.392 Sum_probs=90.7
Q ss_pred cccccCCcCCHH-HHHHHHhhhHhhccCccCCHHHHHhhc---------CeEEEEEE--CCEEEEEEEEEEec-----CC
Q 007275 449 EGTRTAKVTDLS-GIKQIIQPLVESGALVRRTDEELLKAL---------DSFYVVER--EGQIIACAALFPFF-----KE 511 (609)
Q Consensus 449 ~~IR~a~~~D~~-~I~~L~~~~~~~~~~~~~~~e~l~~~i---------~~~~V~~~--dg~IVG~~~l~~~~-----~~ 511 (609)
..||+++.+|++ .+..++.+.... .+++.+.+...+ ..+++++. ++++||++.+.... ..
T Consensus 7 ~~ir~~~~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~ 83 (150)
T PLN02706 7 FKVRRLEISDKSKGFLELLQQLTVV---GDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRNCG 83 (150)
T ss_pred eEEeEhhhcccchHHHHHHHhccCC---CCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeecccCCC
Confidence 469999999998 588887654322 245544444332 12455555 68999999875221 12
Q ss_pred CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeH-HHHHHHHHCCCeEeeee
Q 007275 512 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECSIE 572 (609)
Q Consensus 512 ~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~-~a~~fYek~GF~~~~~~ 572 (609)
..++|..++|+|+|||||+|+.||+.++++|+++|++++.+.+. ...+||+|+||+..+..
T Consensus 84 ~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~y~k~GF~~~g~~ 145 (150)
T PLN02706 84 KVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAFYEKCGYVRKEIQ 145 (150)
T ss_pred cEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHHHHHCcCEEehhh
Confidence 45678889999999999999999999999999999999999883 45689999999987643
No 89
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.36 E-value=7.7e-12 Score=104.24 Aligned_cols=75 Identities=32% Similarity=0.524 Sum_probs=68.9
Q ss_pred EEECCEEEEEEEEEEecCC----CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHC
Q 007275 493 VEREGQIIACAALFPFFKE----KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSR 564 (609)
Q Consensus 493 ~~~dg~IVG~~~l~~~~~~----~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~ 564 (609)
+++||++||++.+.+.... ...+|..++|+|+|||+|+|+.|++.++++|++.|++.+++.+ ..+.+||+++
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 4789999999999876654 6899999999999999999999999999999999999999998 3689999999
Q ss_pred CCe
Q 007275 565 GFR 567 (609)
Q Consensus 565 GF~ 567 (609)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 90
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.36 E-value=7.6e-12 Score=117.15 Aligned_cols=126 Identities=25% Similarity=0.292 Sum_probs=95.7
Q ss_pred cccCC-cCCHHHHHHHHhhhHhhccC-ccCC---HHHHHhhc-----CeEEEEEECCEEEEEEEEEEe-----cCCCeEE
Q 007275 451 TRTAK-VTDLSGIKQIIQPLVESGAL-VRRT---DEELLKAL-----DSFYVVEREGQIIACAALFPF-----FKEKCGE 515 (609)
Q Consensus 451 IR~a~-~~D~~~I~~L~~~~~~~~~~-~~~~---~e~l~~~i-----~~~~V~~~dg~IVG~~~l~~~-----~~~~~~e 515 (609)
||+++ .+|++.|.+|+++.....+. ..++ .+.+.+.+ ...+|++.||+++|++.+... ..+....
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~ 80 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRG 80 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccCCCCEEE
Confidence 68999 99999999999876544332 2233 22333333 357899999999999988641 1345677
Q ss_pred EEEEEEcccCcCCcHHHHHHHHHHHHHHHC-CCCEEEEEe----HHHHHHHHHCCCeEeeeecchh
Q 007275 516 VAAIGVSPECRGQGQGDKLLDYIEKKAASL-GLDMLFLLT----TRTADWFKSRGFRECSIEMIPE 576 (609)
Q Consensus 516 I~~iaV~p~~RgqGiG~~LL~~l~~~A~~~-G~~~I~l~t----~~a~~fYek~GF~~~~~~~lp~ 576 (609)
++.++++|+|||+|+|+.+++.+++++.+. ++.++.+.+ .+++++|+|.||+.++...+|.
T Consensus 81 ~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~~~~ 146 (152)
T PF13523_consen 81 IHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFEFPD 146 (152)
T ss_dssp EEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEEEESS
T ss_pred EeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEEECCC
Confidence 989999999999999999999999999876 899999988 4899999999999999998774
No 91
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.36 E-value=1.8e-11 Score=113.87 Aligned_cols=118 Identities=20% Similarity=0.278 Sum_probs=92.2
Q ss_pred cccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhc-Ce--EEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccC
Q 007275 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-DS--FYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPEC 525 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i-~~--~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~ 525 (609)
.+||+++.+|++.+.++.... ...+|..+.+.... .. .+++..++++||++.+.... ...++..++|+|+|
T Consensus 2 ~~iR~~~~~D~~~l~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~--~~~~~~~i~v~~~~ 75 (146)
T PRK09491 2 NTISSLTPADLPAAYHIEQRA----HAFPWSEKTFASNQGERYLNLKLTVNGQMAAFAITQVVL--DEATLFNIAVDPDY 75 (146)
T ss_pred cchhcCChhhhHHHHHHHHhc----CCCCCCHHHHHHHHhcCceEEEEEECCeEEEEEEEEeec--CceEEEEEEECHHH
Confidence 369999999999999986432 22345555544332 12 23456789999999887433 34668889999999
Q ss_pred cCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 526 RGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 526 RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
||+|+|+.|++.+++.+++.+++.+++.+ .++.+||+|+||+..+..
T Consensus 76 rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~ 126 (146)
T PRK09491 76 QRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIR 126 (146)
T ss_pred ccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeee
Confidence 99999999999999999999999999887 478999999999987654
No 92
>PRK09831 putative acyltransferase; Provisional
Probab=99.35 E-value=1.1e-11 Score=115.82 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=86.2
Q ss_pred ccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHH-----------hhc--CeEEEEEECCEEEEEEEEEEecCCCeEEE
Q 007275 450 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELL-----------KAL--DSFYVVEREGQIIACAALFPFFKEKCGEV 516 (609)
Q Consensus 450 ~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~-----------~~i--~~~~V~~~dg~IVG~~~l~~~~~~~~~eI 516 (609)
.||+++.+|.+.+.+++.+..........+.+.+. ..+ ..++++..+++++|++.+.. .++
T Consensus 2 ~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iiG~~~~~~------~~i 75 (147)
T PRK09831 2 QIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFITCIE------HYI 75 (147)
T ss_pred ccccCChhhHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHhcCceEEEEECCEEEEEEEehh------cee
Confidence 58999999999999998875444332222222222 111 35788888999999988752 467
Q ss_pred EEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe-HHHHHHHHHCCCeEeeeec
Q 007275 517 AAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIEM 573 (609)
Q Consensus 517 ~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t-~~a~~fYek~GF~~~~~~~ 573 (609)
..++|+|+|||+|+|++||+.+++.+++ +.+.+ .++.+||+++||+.++...
T Consensus 76 ~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~k~Gf~~~g~~~ 128 (147)
T PRK09831 76 DMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFERYGFQTVKQQR 128 (147)
T ss_pred eeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHHHCCCEEeeccc
Confidence 8899999999999999999999999876 23333 5789999999999998754
No 93
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.34 E-value=2e-11 Score=119.56 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=94.6
Q ss_pred ccccccCCcCCHHHHHHHHhhhHh-hccCccC-CH----HHHHhhc---------CeEEEEE-ECCEEEEEEEEEEecCC
Q 007275 448 YEGTRTAKVTDLSGIKQIIQPLVE-SGALVRR-TD----EELLKAL---------DSFYVVE-REGQIIACAALFPFFKE 511 (609)
Q Consensus 448 ~~~IR~a~~~D~~~I~~L~~~~~~-~~~~~~~-~~----e~l~~~i---------~~~~V~~-~dg~IVG~~~l~~~~~~ 511 (609)
...||+++++|++.+.++.++... ..+..+| +. +.+..++ ..++++. .++++||++.+... ..
T Consensus 46 ~~~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~-~~ 124 (194)
T PRK10975 46 TTGARVATETDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLREL-ND 124 (194)
T ss_pred CCCcccCCcccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEec-CC
Confidence 467999999999999999887533 2232222 11 1122221 1344444 46889999998743 34
Q ss_pred CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 512 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 512 ~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
...+|..++|+|+|||||+|++|++.+++++++.|++++.+.+ .++.+||+|+||+..+..
T Consensus 125 ~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~ 189 (194)
T PRK10975 125 TDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANIESTA 189 (194)
T ss_pred CceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEE
Confidence 5688999999999999999999999999999999999999887 378999999999998765
No 94
>PRK09084 aspartate kinase III; Validated
Probab=99.33 E-value=2.3e-11 Score=133.97 Aligned_cols=192 Identities=14% Similarity=0.118 Sum_probs=119.5
Q ss_pred eEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcccc-----------------------
Q 007275 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKY----------------------- 156 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~~~----------------------- 156 (609)
++|.|+||+.+.+.+ ++++++-|. +.+.++|+|.++-..+...|.++-.....
T Consensus 1 m~V~KFGGtSv~~~e~i~~v~~ii~---~~~~~~vvVVSA~~~~Td~L~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~l~ 77 (448)
T PRK09084 1 LVVAKFGGTSVADFDAMNRSADIVL---SNPNTRLVVLSASAGVTNLLVALAEGAEPGDERLALLDEIRQIQYAILDRLG 77 (448)
T ss_pred CEEEEECccCcCCHHHHHHHHHHHh---cCCCCEEEEEcCCCCchHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhc
Confidence 479999999998854 556655543 25788899988855555544332100000
Q ss_pred -------------------cCCcc-CCCHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCce
Q 007275 157 -------------------LGRYR-ITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNF 216 (609)
Q Consensus 157 -------------------~~g~r-vt~~~~l~~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~ 216 (609)
..+.. ..++...+.+......+...+.+. .|++.|++ +..+++.+- +
T Consensus 78 ~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~i~s~GE~lSa~l~~~--------~L~~~Gi~----a~~l~~~~~-i 144 (448)
T PRK09084 78 DPNVVREEIERLLENITVLAEAASLATSPALTDELVSHGELMSTLLFVE--------LLRERGVQ----AEWFDVRKV-M 144 (448)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhcCChhhhhhhhhHHHHHHHHHHHH--------HHHhCCCC----cEEEchHHe-E
Confidence 00000 011122222222233344555544 57889987 555544332 2
Q ss_pred eeeeecCcccCcCCcceeeE-----eeeCHHHHHHHHhCCCeEEEcCC-ccCCCCcEEEe---cHHHHHHHHHHHcCCCE
Q 007275 217 LAAKRKGVVDGVDYGATGEV-----KKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADK 287 (609)
Q Consensus 217 l~ak~~~~~~~~d~g~~G~v-----~~v~~~~I~~LL~~G~IPVi~~~-~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~ 287 (609)
++.. +|+. .++ .......+..+++.+ |||+.+. +.+..|++..+ .+|..|+.+|..|+||.
T Consensus 145 ~t~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~ 214 (448)
T PRK09084 145 RTDD--------RFGR-AEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASR 214 (448)
T ss_pred EecC--------CCCc-ccccHHHHHHHHHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCCE
Confidence 2211 1111 111 111224566677888 9999985 66788887765 89999999999999999
Q ss_pred EEEEecccccC-------CCCccccccCHHHHHHHHHh
Q 007275 288 LICIIDGPILD-------ESGHLIRFLTLQEADSLIRQ 318 (609)
Q Consensus 288 LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~~ 318 (609)
+++.|||||++ |++++|+.++.+|+.++...
T Consensus 215 ~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~ 252 (448)
T PRK09084 215 VEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATF 252 (448)
T ss_pred EEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhC
Confidence 99999999983 56899999999999988643
No 95
>PRK05925 aspartate kinase; Provisional
Probab=99.33 E-value=3.5e-11 Score=131.76 Aligned_cols=73 Identities=21% Similarity=0.177 Sum_probs=62.3
Q ss_pred HHHhCCCeEEEcCC-ccCCCCcEE---EecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHH
Q 007275 246 ERLDGGCLVILSNL-GYSSSGEVL---NCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADS 314 (609)
Q Consensus 246 ~LL~~G~IPVi~~~-~~~~~ge~~---~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~ 314 (609)
..++.+.|||+.+. +.+.+|++. .+++|.+|+.+|.+|+||.++++|||||++ +++++|++++.+|+.+
T Consensus 160 ~~~~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~e 239 (440)
T PRK05925 160 LALQEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQN 239 (440)
T ss_pred hhccCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHH
Confidence 35667789999996 777888876 468999999999999999999999999983 4689999999999888
Q ss_pred HHHh
Q 007275 315 LIRQ 318 (609)
Q Consensus 315 l~~~ 318 (609)
+...
T Consensus 240 la~~ 243 (440)
T PRK05925 240 LASF 243 (440)
T ss_pred HHhC
Confidence 7543
No 96
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.33 E-value=1.9e-11 Score=115.88 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=88.5
Q ss_pred cccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhc-CeEEEEE-ECCEEEEEEEEEEec-CCCeEEEEEEEEcccCcC
Q 007275 451 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-DSFYVVE-REGQIIACAALFPFF-KEKCGEVAAIGVSPECRG 527 (609)
Q Consensus 451 IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i-~~~~V~~-~dg~IVG~~~l~~~~-~~~~~eI~~iaV~p~~Rg 527 (609)
||+++.+|++.|.+++..................... ..+++++ .++++||++.+.... .....++..++|+|+|||
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg 80 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLDLNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARG 80 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCCcccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhcc
Confidence 6899999999999998764322111111111111212 3466666 467999998765332 335678999999999999
Q ss_pred CcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEe
Q 007275 528 QGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFREC 569 (609)
Q Consensus 528 qGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~ 569 (609)
||+|++|++.++++++..++.++.+.+ ..+++||+|+||+..
T Consensus 81 ~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~ 126 (157)
T TIGR02406 81 KGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRG 126 (157)
T ss_pred CcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccC
Confidence 999999999999999999999999887 378999999999763
No 97
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.32 E-value=2.9e-11 Score=143.26 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=65.6
Q ss_pred CHHHHHHHHhCC-CeEEEcCC-ccCCCCcEEE---ecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCcccccc
Q 007275 240 DVTRMRERLDGG-CLVILSNL-GYSSSGEVLN---CNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFL 307 (609)
Q Consensus 240 ~~~~I~~LL~~G-~IPVi~~~-~~~~~ge~~~---id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~i 307 (609)
+...++.+++.+ .|||+.+. +.+..|++.. +++|.+|+.+|.+|+||+|+++|||||++ +++++|+++
T Consensus 178 ~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~l 257 (861)
T PRK08961 178 DPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRL 257 (861)
T ss_pred HHHHHHHHhccCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEeccc
Confidence 455677777766 49999986 6677788664 58999999999999999999999999984 367899999
Q ss_pred CHHHHHHHHHh
Q 007275 308 TLQEADSLIRQ 318 (609)
Q Consensus 308 t~~e~~~l~~~ 318 (609)
+.+|+.++...
T Consensus 258 s~~e~~el~~~ 268 (861)
T PRK08961 258 DYDEAQEIATT 268 (861)
T ss_pred CHHHHHHHHHC
Confidence 99999988643
No 98
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.31 E-value=6.8e-11 Score=110.60 Aligned_cols=121 Identities=26% Similarity=0.422 Sum_probs=91.2
Q ss_pred cccCCcCCHHHHHHHHhhhHhhccCcc----CCHHHHHhhc--------CeEEEEEE-CCEEEEEEEEEEecC-CCeEEE
Q 007275 451 TRTAKVTDLSGIKQIIQPLVESGALVR----RTDEELLKAL--------DSFYVVER-EGQIIACAALFPFFK-EKCGEV 516 (609)
Q Consensus 451 IR~a~~~D~~~I~~L~~~~~~~~~~~~----~~~e~l~~~i--------~~~~V~~~-dg~IVG~~~l~~~~~-~~~~eI 516 (609)
||+++++|++.|..+++......+... .+.+.+..++ ..++++.+ +|++||++.+.+... ...+++
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~ 80 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPYNHTAEL 80 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSGTTEEEE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeeccCCEEEE
Confidence 699999999999999977443333211 2333333322 44666665 999999999986543 355666
Q ss_pred EEEEEcccCcCCcHHHHHHHHHHHHH-HHCCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 517 AAIGVSPECRGQGQGDKLLDYIEKKA-ASLGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 517 ~~iaV~p~~RgqGiG~~LL~~l~~~A-~~~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
.++|.|+||++|+|+.|++.++++| ++.|++++++.+ .++..||+++||+..+..
T Consensus 81 -~~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~ 140 (155)
T PF13420_consen 81 -SIYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGEL 140 (155)
T ss_dssp -EEEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEE
T ss_pred -eeEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEE
Confidence 4888899999999999999999999 899999999987 489999999999998865
No 99
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=4.6e-11 Score=113.60 Aligned_cols=144 Identities=27% Similarity=0.302 Sum_probs=111.1
Q ss_pred ccccCCcCCHHHHHHHHhhhHhhccC----ccCCHHHHHhhc-------CeEEEEEEC-CEEEEEEEEEEecCC----Ce
Q 007275 450 GTRTAKVTDLSGIKQIIQPLVESGAL----VRRTDEELLKAL-------DSFYVVERE-GQIIACAALFPFFKE----KC 513 (609)
Q Consensus 450 ~IR~a~~~D~~~I~~L~~~~~~~~~~----~~~~~e~l~~~i-------~~~~V~~~d-g~IVG~~~l~~~~~~----~~ 513 (609)
.||+++.+|++.|..+++.....+.. .+.+.+.+.+|. ..++|++.+ |+++|++.+.++... ..
T Consensus 3 ~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~t 82 (169)
T COG1247 3 EIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHT 82 (169)
T ss_pred EEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccceE
Confidence 58999999999999999997776543 456777777665 156777655 999999999876442 23
Q ss_pred EEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeeeecchhHhhhhcccCCCce
Q 007275 514 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSK 589 (609)
Q Consensus 514 ~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~~~lp~~~~~~y~~~~~s~ 589 (609)
.+. .++|+|++||+|+|++||+.+++.|+++|++.+.... ..+.++++++||+.++.......+...| -+.
T Consensus 83 ve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~w----ld~ 157 (169)
T COG1247 83 VEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRW----LDL 157 (169)
T ss_pred EEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceE----Eee
Confidence 344 9999999999999999999999999999998877665 3789999999999998775443332222 256
Q ss_pred eEEeecCCC
Q 007275 590 YYMKKLLPD 598 (609)
Q Consensus 590 i~mkkll~~ 598 (609)
++|.+.|..
T Consensus 158 ~~~~~~l~~ 166 (169)
T COG1247 158 VLMQLLLEE 166 (169)
T ss_pred eeeehhhcc
Confidence 777776654
No 100
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.28 E-value=7.4e-11 Score=106.25 Aligned_cols=109 Identities=24% Similarity=0.379 Sum_probs=85.4
Q ss_pred CHHHHHHHHhhhHhhccCccCCHHHHHhhc----CeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHH
Q 007275 458 DLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDK 533 (609)
Q Consensus 458 D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i----~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~ 533 (609)
|++.+.++.... +..+++.+.+...+ ..+++..+++++||++.+... ....++..++|+|+|||||+|++
T Consensus 1 d~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~--~~~~~i~~~~v~~~~rg~G~g~~ 74 (131)
T TIGR01575 1 DLKAVLEIEAAA----FAFPWTEAQFAEELANYHLCYLLARIGGKVVGYAGVQIV--LDEAHILNIAVKPEYQGQGIGRA 74 (131)
T ss_pred CHHHHHHHHHhh----CCCCCCHHHHHHHhcCCCceEEEEecCCeEEEEEEEEec--CCCeEEEEEEECHHHcCCCHHHH
Confidence 566777774433 33356666666554 345666778999999997732 34567889999999999999999
Q ss_pred HHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 534 LLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 534 LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
|++++++++.+.+++.+++.+ .++.+||+++||+..+..
T Consensus 75 ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 117 (131)
T TIGR01575 75 LLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIR 117 (131)
T ss_pred HHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCccccc
Confidence 999999999999999999876 368899999999987654
No 101
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.28 E-value=3.1e-10 Score=117.93 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=60.7
Q ss_pred hCCCeEEEcCC-ccCCCCcEEE---ecHHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCHHHHHHHHH
Q 007275 249 DGGCLVILSNL-GYSSSGEVLN---CNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (609)
Q Consensus 249 ~~G~IPVi~~~-~~~~~ge~~~---id~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~~e~~~l~~ 317 (609)
..+.|||+.+. +.+..|++.. .++|..|+.+|..|+|+.++++|||||++ +++++|+.++.+|+.++..
T Consensus 176 ~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~ 255 (292)
T cd04258 176 LAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMAT 255 (292)
T ss_pred hcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHH
Confidence 45689999986 6667788774 57999999999999999999999999983 4589999999999999865
Q ss_pred hh
Q 007275 318 QR 319 (609)
Q Consensus 318 ~~ 319 (609)
.|
T Consensus 256 ~G 257 (292)
T cd04258 256 FG 257 (292)
T ss_pred CC
Confidence 43
No 102
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.27 E-value=6.5e-11 Score=98.62 Aligned_cols=75 Identities=37% Similarity=0.749 Sum_probs=64.2
Q ss_pred eEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe-HHHHHHHHHCCCe
Q 007275 489 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFR 567 (609)
Q Consensus 489 ~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t-~~a~~fYek~GF~ 567 (609)
.++++++|++++||+.+.+ .++..+|..++|+|+|||+|+|++||+++++.++. +.+++.+ ..+.+||+++||+
T Consensus 4 ~~~~~~~~~~ivG~~~~~~--~~~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~~~GF~ 78 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWP--NEDFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYEKLGFE 78 (79)
T ss_dssp EEEEEEETTEEEEEEEEEE--TTTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHHHTTEE
T ss_pred EEEEEEECCEEEEEEEEEE--cCCEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHHHCcCC
Confidence 5788999999999999974 34588999999999999999999999999888843 4577776 5789999999998
Q ss_pred E
Q 007275 568 E 568 (609)
Q Consensus 568 ~ 568 (609)
+
T Consensus 79 ~ 79 (79)
T PF13508_consen 79 E 79 (79)
T ss_dssp E
T ss_pred C
Confidence 5
No 103
>PRK10314 putative acyltransferase; Provisional
Probab=99.27 E-value=2.9e-11 Score=114.23 Aligned_cols=122 Identities=13% Similarity=0.116 Sum_probs=86.5
Q ss_pred cccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHh--hcCeEEEEEECCEEEEEEEEEEecCC-CeEEEEEEEEcccCcC
Q 007275 451 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLK--ALDSFYVVEREGQIIACAALFPFFKE-KCGEVAAIGVSPECRG 527 (609)
Q Consensus 451 IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~--~i~~~~V~~~dg~IVG~~~l~~~~~~-~~~eI~~iaV~p~~Rg 527 (609)
+..++.+++.++..+.....-.....+...-+-.+ .....+++..+++++|++.+.+..+. ...+|.+++|+|+|||
T Consensus 9 ~~~l~~~~~~~~~~lR~~VF~~eq~~~~~e~D~~d~~~~~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG 88 (153)
T PRK10314 9 HSELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDLTGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRG 88 (153)
T ss_pred hhhCCHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhC
Confidence 34566666777777776643322222211101111 11234556678999999999854322 3579999999999999
Q ss_pred CcHHHHHHHHHHHHHHHC-CCCEEEEEeH-HHHHHHHHCCCeEeeee
Q 007275 528 QGQGDKLLDYIEKKAASL-GLDMLFLLTT-RTADWFKSRGFRECSIE 572 (609)
Q Consensus 528 qGiG~~LL~~l~~~A~~~-G~~~I~l~t~-~a~~fYek~GF~~~~~~ 572 (609)
+|+|++||+.+++++++. +...+++.+. .+.+||+++||+.++..
T Consensus 89 ~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k~GF~~~g~~ 135 (153)
T PRK10314 89 EKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQSFGFIPVTEV 135 (153)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHHCCCEECCCc
Confidence 999999999999999874 7788888874 67899999999988754
No 104
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.26 E-value=5.6e-11 Score=110.16 Aligned_cols=99 Identities=21% Similarity=0.233 Sum_probs=76.7
Q ss_pred eEEEEEECCE--EEEEEEEEEecC--CCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHH
Q 007275 489 SFYVVEREGQ--IIACAALFPFFK--EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADW 560 (609)
Q Consensus 489 ~~~V~~~dg~--IVG~~~l~~~~~--~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~f 560 (609)
+++++..|++ .||++.+..... ...++|.+++|+++|||||||++|.+.+++.++.+|+..+.|.| ..|.++
T Consensus 56 ~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~L 135 (165)
T KOG3139|consen 56 CFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRL 135 (165)
T ss_pred eEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHH
Confidence 3444444433 598887763222 24699999999999999999999999999999999999999999 379999
Q ss_pred HHHCCCeEeeeecchhHhhhhcccCCCceeEEee
Q 007275 561 FKSRGFRECSIEMIPEERRKRINLSRNSKYYMKK 594 (609)
Q Consensus 561 Yek~GF~~~~~~~lp~~~~~~y~~~~~s~i~mkk 594 (609)
|+++||+...... .|..++-+.+.|+-
T Consensus 136 Y~sLGF~r~~r~~-------~YYlng~dA~rl~L 162 (165)
T KOG3139|consen 136 YESLGFKRDKRLF-------RYYLNGMDALRLKL 162 (165)
T ss_pred HHhcCceEeccee-------EEEECCcceEEEEe
Confidence 9999999876552 45555556666553
No 105
>PRK09034 aspartate kinase; Reviewed
Probab=99.24 E-value=6.7e-10 Score=122.75 Aligned_cols=123 Identities=13% Similarity=0.163 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHHhCCCeEE
Q 007275 176 GGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVI 255 (609)
Q Consensus 176 g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL~~G~IPV 255 (609)
..++..+.+. .|++.|++ +..+++.+-.+++.. +++.. .+.....+.+..++..+.|||
T Consensus 120 E~~S~~l~a~--------~L~~~g~~----a~~~~~~~~~~~t~~--------~~~~a-~i~~~~~~~~~~~~~~~~v~V 178 (454)
T PRK09034 120 EDLNAKLIAA--------YLNYEGIP----ARYVDPKEAGIIVTD--------EPGNA-QVLPESYDNLKKLRDRDEKLV 178 (454)
T ss_pred HHHHHHHHHH--------HHHhCCCC----cEEEchHHceEEecC--------CcCce-eEcHhhHHHHHHHHhcCCEEE
Confidence 3445555554 47888987 555544443333211 12211 223335667777777888999
Q ss_pred EcCC-ccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEeccccc---C----CCCccccccCHHHHHHHHHhh
Q 007275 256 LSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQR 319 (609)
Q Consensus 256 i~~~-~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv---~----~~~~lI~~it~~e~~~l~~~~ 319 (609)
+.+. +.+..|++..+ .+|..|+.+|.+|+||.+.+.|||||+ | |+++.|+.++.+|+.+|...|
T Consensus 179 v~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~G 253 (454)
T PRK09034 179 IPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAG 253 (454)
T ss_pred ecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCC
Confidence 9996 66788887765 589999999999999999999999998 3 578999999999999986543
No 106
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.24 E-value=2.2e-10 Score=134.60 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=63.5
Q ss_pred HHHHHHH-hCCCeEEEcCC-ccCCCCcEEEec---HHHHHHHHHHHcCCCEEEEEecccccC-------CCCccccccCH
Q 007275 242 TRMRERL-DGGCLVILSNL-GYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL 309 (609)
Q Consensus 242 ~~I~~LL-~~G~IPVi~~~-~~~~~ge~~~id---~D~lAa~lA~~L~Ad~LIiLTDvdgv~-------~~~~lI~~it~ 309 (609)
..|++++ +.+.|||+.+. +.+..|++..+. +|.+|+.+|..|+||.++++|||||++ |++++|++++.
T Consensus 172 ~~i~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy 251 (819)
T PRK09436 172 RRIAASFIPADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSY 251 (819)
T ss_pred HHHHHHHhcCCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecH
Confidence 4555544 56889999996 666778887665 899999999999999999999999983 56899999999
Q ss_pred HHHHHHHH
Q 007275 310 QEADSLIR 317 (609)
Q Consensus 310 ~e~~~l~~ 317 (609)
+|+.++..
T Consensus 252 ~ea~el~~ 259 (819)
T PRK09436 252 QEAMELSY 259 (819)
T ss_pred HHHHHHHh
Confidence 99988853
No 107
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.22 E-value=7.7e-10 Score=115.57 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=59.8
Q ss_pred CCCeEEEcCC-ccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEeccccc---C----CCCccccccCHHHHHHHHHh
Q 007275 250 GGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQ 318 (609)
Q Consensus 250 ~G~IPVi~~~-~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv---~----~~~~lI~~it~~e~~~l~~~ 318 (609)
.+.|||+.+. +.+..|++..+ .+|..|+.+|..|+|+.++++|||||+ | +++++|++|+.+|+.++...
T Consensus 189 ~~~v~Vv~GFig~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~ 268 (306)
T cd04247 189 ENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYY 268 (306)
T ss_pred CCceEEeeccEecCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhC
Confidence 5789999996 66677887765 589999999999999999999999998 3 45899999999999998654
Q ss_pred h
Q 007275 319 R 319 (609)
Q Consensus 319 ~ 319 (609)
+
T Consensus 269 G 269 (306)
T cd04247 269 G 269 (306)
T ss_pred c
Confidence 3
No 108
>PRK10514 putative acetyltransferase; Provisional
Probab=99.20 E-value=1.9e-10 Score=106.53 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=82.0
Q ss_pred cccccCCcCCHHHHHHHHhhhHh--hccCccCCHHHHHhhc------CeEEEE-EECCEEEEEEEEEEecCCCeEEEEEE
Q 007275 449 EGTRTAKVTDLSGIKQIIQPLVE--SGALVRRTDEELLKAL------DSFYVV-EREGQIIACAALFPFFKEKCGEVAAI 519 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~~~--~~~~~~~~~e~l~~~i------~~~~V~-~~dg~IVG~~~l~~~~~~~~~eI~~i 519 (609)
..||+++++|.+.+.+++.+... ..+..+.+.+.+..++ ..++++ ..++++||++.+.+ .++..+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~------~~~~~~ 75 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLSG------GHMEAL 75 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEec------CcEeEE
Confidence 46899999999999999876332 1222233333333322 223444 46899999998752 246689
Q ss_pred EEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeeeec
Q 007275 520 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 573 (609)
Q Consensus 520 aV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~~~ 573 (609)
+|+|+|||+|+|++||+++++.+. ++.+.+ .++.+||+|+||+..+...
T Consensus 76 ~v~p~~rgkGig~~Ll~~~~~~~~-----~i~~~v~~~N~~a~~~yek~Gf~~~~~~~ 128 (145)
T PRK10514 76 FVDPDVRGCGVGRMLVEHALSLHP-----ELTTDVNEQNEQAVGFYKKMGFKVTGRSE 128 (145)
T ss_pred EECHHhccCCHHHHHHHHHHHhcc-----ccEEEeecCCHHHHHHHHHCCCEEecccc
Confidence 999999999999999999998753 333433 4899999999999987654
No 109
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.17 E-value=2.9e-10 Score=120.19 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=96.9
Q ss_pred ccccccccCCcCCHHHHHHHHhhhHhhcc-CccCCHHHHHhhcC--eEEEEEE-----CCEEEEEEEEEEecCCCeEEEE
Q 007275 446 DLYEGTRTAKVTDLSGIKQIIQPLVESGA-LVRRTDEELLKALD--SFYVVER-----EGQIIACAALFPFFKEKCGEVA 517 (609)
Q Consensus 446 d~~~~IR~a~~~D~~~I~~L~~~~~~~~~-~~~~~~e~l~~~i~--~~~V~~~-----dg~IVG~~~l~~~~~~~~~eI~ 517 (609)
+|..+||+++++|++.+.+|.+...+... ...++.+++...+. .+|++.. ++.+||++.+.. ..+.++|.
T Consensus 184 ~m~~~Ir~a~~~Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~~~~~~~~~d~~gd~givG~~~~~~--~~~~~~I~ 261 (320)
T TIGR01686 184 ELSLNISKNDEQNVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKEEIVTVSMSDRFGDSGIIGIFVFEK--KEGNLFID 261 (320)
T ss_pred CCEEEEEECChhhhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCCCEEEEEEEecCCCCceEEEEEEEe--cCCcEEEE
Confidence 34457999999999999999876543322 24567777776652 3444432 567999998763 35678999
Q ss_pred EEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe------HHHHHHHHHCCCeEe
Q 007275 518 AIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT------TRTADWFKSRGFREC 569 (609)
Q Consensus 518 ~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t------~~a~~fYek~GF~~~ 569 (609)
.++|+|++||+|+|++||++++++|++.|++.+++.+ .++++||+++||+..
T Consensus 262 ~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 262 DLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred EEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 9999999999999999999999999999999998865 378999999999854
No 110
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.17 E-value=1.7e-10 Score=103.59 Aligned_cols=120 Identities=23% Similarity=0.369 Sum_probs=96.7
Q ss_pred cccccCCcCCHHH-HHHHHhhhHhhccCccCCHHHHHhhc-------CeEE--EEEE--CCEEEEEEEEEEe-----cCC
Q 007275 449 EGTRTAKVTDLSG-IKQIIQPLVESGALVRRTDEELLKAL-------DSFY--VVER--EGQIIACAALFPF-----FKE 511 (609)
Q Consensus 449 ~~IR~a~~~D~~~-I~~L~~~~~~~~~~~~~~~e~l~~~i-------~~~~--V~~~--dg~IVG~~~l~~~-----~~~ 511 (609)
..+||+..+|+.. ..+++.++...+.. ++++|.... ..|+ |+++ .++|||.+.+.-. .-.
T Consensus 7 ~~lR~L~~~D~~kGf~elL~qLT~vG~v---t~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~g 83 (150)
T KOG3396|consen 7 FKLRPLEEDDYGKGFIELLKQLTSVGVV---TREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGCG 83 (150)
T ss_pred eEEeecccccccchHHHHHHHHhhcccc---CHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhccc
Confidence 4799999999986 89999998888775 344443332 2233 3343 3889999999742 124
Q ss_pred CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe-HHHHHHHHHCCCeEeee
Q 007275 512 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 571 (609)
Q Consensus 512 ~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t-~~a~~fYek~GF~~~~~ 571 (609)
..++|.+++|+++||||++|+.|++.+...++..||.++.|.| .....||+|+||...+.
T Consensus 84 ~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~FYeKcG~s~~~~ 144 (150)
T KOG3396|consen 84 SRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVKFYEKCGYSNAGN 144 (150)
T ss_pred ccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhhHHHHcCccccch
Confidence 6689999999999999999999999999999999999999999 47899999999988653
No 111
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.16 E-value=2.4e-10 Score=128.94 Aligned_cols=121 Identities=18% Similarity=0.242 Sum_probs=94.1
Q ss_pred cccccC-CcCCHHHHHHHHhhhHhhccCccCCHHHHHhhc----CeEEEEEE--CCEEEEEEEEEEe-----cCCCeEEE
Q 007275 449 EGTRTA-KVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVER--EGQIIACAALFPF-----FKEKCGEV 516 (609)
Q Consensus 449 ~~IR~a-~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i----~~~~V~~~--dg~IVG~~~l~~~-----~~~~~~eI 516 (609)
..||++ +.+|++.|.++++.. ...+++.+.+.... ..+|++++ ++++|||+..... ......+|
T Consensus 83 ~~IR~~~~~~D~~~I~~L~~~~----~~~p~~~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i 158 (547)
T TIGR03103 83 FTVRRLRGPADVDAINRLYAAR----GMVPVRVDFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSL 158 (547)
T ss_pred cEEEeCCChhHHHHHHHHHHhc----CCCCCCHHHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEE
Confidence 569997 789999999997663 22344545444333 35777775 6899999976422 11234689
Q ss_pred EEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeeeec
Q 007275 517 AAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 573 (609)
Q Consensus 517 ~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~~~ 573 (609)
.+++|+|+|||+|+|++||+.+++++++.|+..+++.+ ..+++||+|+||+.+....
T Consensus 159 ~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~ 219 (547)
T TIGR03103 159 WCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPVFA 219 (547)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEE
Confidence 99999999999999999999999999999999999987 3789999999999876543
No 112
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.16 E-value=4.1e-10 Score=107.45 Aligned_cols=125 Identities=22% Similarity=0.315 Sum_probs=94.2
Q ss_pred ccccccccCCcCCHH--HHHHHHhhhHhhccCccCCHHHHHhhc----CeEEEEEE---CC----EEEEEEEEEEecCC-
Q 007275 446 DLYEGTRTAKVTDLS--GIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVER---EG----QIIACAALFPFFKE- 511 (609)
Q Consensus 446 d~~~~IR~a~~~D~~--~I~~L~~~~~~~~~~~~~~~e~l~~~i----~~~~V~~~---dg----~IVG~~~l~~~~~~- 511 (609)
.+...+|++...|++ .+..+........ .+|+...+...+ ..+++... ++ +++||+........
T Consensus 9 ~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~ 86 (177)
T COG0456 9 EDKVTIREAINKDLLDVALAALEARTFDIR--LPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRP 86 (177)
T ss_pred ccceehhhhhhcccchHHHHHHhhhcCCCC--CcchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCCc
Confidence 344568999999998 5555532222211 566766666554 44566655 33 59999988633332
Q ss_pred ---CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCC-CEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 512 ---KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGL-DMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 512 ---~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~-~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
..++|..++|+|+|||+|||++||+.+++.+++.+. ..+.|.+ ..|+.||+++||+.....
T Consensus 87 ~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~ 155 (177)
T COG0456 87 SADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIR 155 (177)
T ss_pred cccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeee
Confidence 278999999999999999999999999999999987 8888888 479999999999998665
No 113
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.15 E-value=6.2e-10 Score=104.09 Aligned_cols=121 Identities=18% Similarity=0.182 Sum_probs=93.3
Q ss_pred ccccCCcCCHHHHHHHHhhhHhhccC---ccCCHHHHHhhc--------CeEEEEEECCEEEEEEEEEEecC-CCeEEEE
Q 007275 450 GTRTAKVTDLSGIKQIIQPLVESGAL---VRRTDEELLKAL--------DSFYVVEREGQIIACAALFPFFK-EKCGEVA 517 (609)
Q Consensus 450 ~IR~a~~~D~~~I~~L~~~~~~~~~~---~~~~~e~l~~~i--------~~~~V~~~dg~IVG~~~l~~~~~-~~~~eI~ 517 (609)
.+||++++|.+.+.++.++.....+. ...+.+....++ ..++++..+|++||++.+..... ...++++
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~~~~~~g 81 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVHKSAFWG 81 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhhCeEEEE
Confidence 58999999999999998765444332 123433322222 35778888999999999985432 3456774
Q ss_pred EEEEcccCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 518 AIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 518 ~iaV~p~~RgqGiG~~LL~~l~~~A~~-~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
+++.|.+| +|+|+++++.++++|.+ .+++++.+.+ .++++||+|+||+.++..
T Consensus 82 -~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~ 139 (156)
T TIGR03585 82 -IYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVF 139 (156)
T ss_pred -EEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeee
Confidence 55999999 99999999999999985 6999999887 489999999999998765
No 114
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.15 E-value=8.4e-10 Score=105.22 Aligned_cols=143 Identities=17% Similarity=0.232 Sum_probs=104.4
Q ss_pred cccccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhc----CeEEEEEECCEEEEEEEEEEecCC----CeEEEEE
Q 007275 447 LYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKE----KCGEVAA 518 (609)
Q Consensus 447 ~~~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i----~~~~V~~~dg~IVG~~~l~~~~~~----~~~eI~~ 518 (609)
++..||+.++.|++.|.++.+.....+- .....+.+.+.. ...+|+.+|+++||.+.+++..-+ ...-|+.
T Consensus 2 ~~~~ir~e~~~d~~~i~~~~~~aF~~~~-e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaP 80 (171)
T COG3153 2 MMMLIRTETPADIPAIEALTREAFGPGR-EAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAP 80 (171)
T ss_pred CccEEEecChhhHHHHHHHHHHHhhcch-HHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCcccceEEEEe
Confidence 3456999999999999999776554111 111122222222 346888889999999999874322 4467899
Q ss_pred EEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeHHHHHHHHHCCCeEeeeecchhHhhhhcccCCCceeEEeecCC
Q 007275 519 IGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLP 597 (609)
Q Consensus 519 iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~~a~~fYek~GF~~~~~~~lp~~~~~~y~~~~~s~i~mkkll~ 597 (609)
++|+|+|||||||.+||+..++.++..|+..+.+.- ...||.++||+......++.. ...+++.++.+.|-.
T Consensus 81 LaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlG--dp~YY~rfGF~~~~~~~l~~p-----~~~~~~~fl~~~L~~ 152 (171)
T COG3153 81 LAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLG--DPTYYSRFGFEPAAGAKLYAP-----GPVPDERFLALELGD 152 (171)
T ss_pred EEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEec--CcccccccCcEEccccccccC-----CCCCCceEEEEEccC
Confidence 999999999999999999999999999999987744 678999999999877655531 113445555566554
No 115
>PLN02551 aspartokinase
Probab=99.14 E-value=2.3e-09 Score=119.71 Aligned_cols=197 Identities=16% Similarity=0.139 Sum_probs=119.9
Q ss_pred CeEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcC-------Cccc-c--------------
Q 007275 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERG-------HEAK-Y-------------- 156 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g-------~~~~-~-------------- 156 (609)
.++|.|+||+.+.+.+ ++++++-|..- ...++|+|.++..-+...|.++. .+.. .
T Consensus 52 ~~~V~KFGGtSv~~~e~i~~v~~iI~~~--~~~~~vVVvSA~~~~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 129 (521)
T PLN02551 52 LTVVMKFGGSSVASAERMREVADLILSF--PDERPVVVLSAMGKTTNNLLLAGEKAVSCGVTNVSEIEELSAIRELHLRT 129 (521)
T ss_pred ceEEEEECCCccCCHHHHHHHHHHHHhc--CCCCEEEEEcCCCCchHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHH
Confidence 4679999999998854 66776655532 23457788886433333332221 0000 0
Q ss_pred ---------------------cCCcc---CCCHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHhcCCCCcceeEEEeec
Q 007275 157 ---------------------LGRYR---ITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVA 212 (609)
Q Consensus 157 ---------------------~~g~r---vt~~~~l~~~~~~~g~i~~~l~~~Ls~~~~~~~l~~~G~~~~~~av~l~~~ 212 (609)
..|.. ..++...+.+......+...|.+. .|++.|++ +..+++.
T Consensus 130 ~~~L~~~~~~~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~GE~lSa~lla~--------~L~~~Gi~----a~~lda~ 197 (521)
T PLN02551 130 ADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSFGERMSTRIFAA--------YLNKIGVK----ARQYDAF 197 (521)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHhHHHHHHHHHHHH--------HHHHCCCC----cEEechH
Confidence 00100 011222233333333445555554 47888887 5555554
Q ss_pred CCceeeeeecCcccCcCCcceeeEeeeCHHHHHHHH-----hCCCeEEEcCC-ccC-CCCcEEEe---cHHHHHHHHHHH
Q 007275 213 SGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERL-----DGGCLVILSNL-GYS-SSGEVLNC---NTYEVATACALA 282 (609)
Q Consensus 213 d~~~l~ak~~~~~~~~d~g~~G~v~~v~~~~I~~LL-----~~G~IPVi~~~-~~~-~~ge~~~i---d~D~lAa~lA~~ 282 (609)
+-.+++.. +|+. ..+.......+...+ +.+.|||+.+. +.+ ..|++..+ -+|..|+.+|.+
T Consensus 198 ~~gi~t~~--------~~~~-a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~ 268 (521)
T PLN02551 198 DIGFITTD--------DFTN-ADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKA 268 (521)
T ss_pred HcceEecC--------CCCc-cchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHH
Confidence 43344321 1221 112223333444443 35689999996 667 78988765 489999999999
Q ss_pred cCCCEEEEEeccccc---C----CCCccccccCHHHHHHHHHhh
Q 007275 283 IEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQR 319 (609)
Q Consensus 283 L~Ad~LIiLTDvdgv---~----~~~~lI~~it~~e~~~l~~~~ 319 (609)
|+|+.+.+.|||||+ | +++++|++++.+|+.+|..-|
T Consensus 269 L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~G 312 (521)
T PLN02551 269 LGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFG 312 (521)
T ss_pred cCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCC
Confidence 999999999999998 3 568999999999999986544
No 116
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=99.10 E-value=2.6e-09 Score=100.69 Aligned_cols=113 Identities=13% Similarity=0.185 Sum_probs=85.3
Q ss_pred hCCCeEEEcCCc----cCCCCcEEEecHHHHHHHHHHHcCCCEEEEEecccccC---CCCccccccCHHHHHHHHHhhch
Q 007275 249 DGGCLVILSNLG----YSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---ESGHLIRFLTLQEADSLIRQRVK 321 (609)
Q Consensus 249 ~~G~IPVi~~~~----~~~~ge~~~id~D~lAa~lA~~L~Ad~LIiLTDvdgv~---~~~~lI~~it~~e~~~l~~~~~~ 321 (609)
..+.+||+-|-. .++--+.+-+-+|.+|..+|.+++|.++|+.|||||++ +++++|++|+..|++.- ..
T Consensus 91 ~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~~kLv~eI~A~dl~~~-~t--- 166 (212)
T COG2054 91 KPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPKGKLVREIRASDLKTG-ET--- 166 (212)
T ss_pred CcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCcchhhhhhhHhhcccC-cc---
Confidence 456677776632 34445678899999999999999999999999999985 55779998887765431 00
Q ss_pred hhhhHhhhhhhhhcccccccCCCCCCcccccCCCCCcccccccccccCCcccCCCCCCccccccccccccchhhcccCCH
Q 007275 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (609)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~~~g~~~~~~~~~~m~ 401 (609)
..| + +.
T Consensus 167 --------------------~vD---------------------------------~---------------------~~ 172 (212)
T COG2054 167 --------------------SVD---------------------------------P---------------------YL 172 (212)
T ss_pred --------------------ccc---------------------------------c---------------------hh
Confidence 011 2 66
Q ss_pred HHHHHHHHHHHcCCCeEEEeecccccchhhhhhhcCCCcccccc
Q 007275 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (609)
Q Consensus 402 ~kl~aa~~a~~~Gv~~v~i~~g~~~~~ll~el~~~~g~GT~i~~ 445 (609)
|+| +.+.+.. +.++||..|.++++.+...+.+||.|.+
T Consensus 173 P~L-----l~k~~m~-~~Vvng~~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 173 PKL-----LVKYKMN-CRVVNGKEPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred hHH-----HHHcCCc-eEEECCCCHHHHHHHHhccccceEEEeC
Confidence 665 4566776 8999999999999988777789999875
No 117
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.10 E-value=2.5e-09 Score=102.99 Aligned_cols=124 Identities=11% Similarity=0.096 Sum_probs=94.1
Q ss_pred ccccccCCcCCHHHHHHHHhhh--Hhhc---cC-ccCCHHHHHhhc-----------CeEEEEEECCEEEEEEEEEEecC
Q 007275 448 YEGTRTAKVTDLSGIKQIIQPL--VESG---AL-VRRTDEELLKAL-----------DSFYVVEREGQIIACAALFPFFK 510 (609)
Q Consensus 448 ~~~IR~a~~~D~~~I~~L~~~~--~~~~---~~-~~~~~e~l~~~i-----------~~~~V~~~dg~IVG~~~l~~~~~ 510 (609)
...+|+++++|++.+.+++... .... +. .+.+.++..+++ ..+|++..++++||++.+.....
T Consensus 10 rl~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~ 89 (179)
T PRK10151 10 SLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSFNRIEP 89 (179)
T ss_pred cEEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEEEeecc
Confidence 3569999999999999998432 2111 11 123444444433 12577778999999999875432
Q ss_pred -CCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 511 -EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 511 -~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~-~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
...++| .+.++|+|||+|+|+++++.+++++.+ .+++++.+.+ .++.++|+|+||+.++..
T Consensus 90 ~~~~~~i-g~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~ 156 (179)
T PRK10151 90 LNKTAYI-GYWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCL 156 (179)
T ss_pred CCCceEE-EEEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEe
Confidence 356788 578999999999999999999999976 6899998877 489999999999998876
No 118
>PRK10562 putative acetyltransferase; Provisional
Probab=99.09 E-value=1.6e-09 Score=100.64 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=79.9
Q ss_pred ccccCCcCCHHHHHHHHhhhHhh--ccCcc--C--CHHHHHhhc---CeEEEEEECCEEEEEEEEEEecCCCeEEEEEEE
Q 007275 450 GTRTAKVTDLSGIKQIIQPLVES--GALVR--R--TDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIG 520 (609)
Q Consensus 450 ~IR~a~~~D~~~I~~L~~~~~~~--~~~~~--~--~~e~l~~~i---~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~ia 520 (609)
.||+++.+|++.+.+++...... .+... + ..+.+.++. ..++++..++++||++.+... ..+..++
T Consensus 1 ~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~~~-----~~i~~~~ 75 (145)
T PRK10562 1 MIREYQPSDLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYLPAAQTWVWEEDGKLLGFVSVLEG-----RFVGALF 75 (145)
T ss_pred CcccccchhhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhcCcccEEEEEECCEEEEEEEEeec-----cEEEEEE
Confidence 38999999999999997543211 11100 0 011111111 245777888999999988622 3688899
Q ss_pred EcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 521 VSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 521 V~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
|+|+|||+|+|++||+++++.+ +.+.+.+ .++.+||+|+||+.++..
T Consensus 76 v~~~~rg~G~g~~ll~~~~~~~-----~~~~~~v~~~N~~s~~~y~k~Gf~~~~~~ 126 (145)
T PRK10562 76 VAPKAVRRGIGKALMQHVQQRY-----PHLSLEVYQKNQRAVNFYHAQGFRIVDSA 126 (145)
T ss_pred ECHHHcCCCHHHHHHHHHHhhC-----CeEEEEEEcCChHHHHHHHHCCCEEcccc
Confidence 9999999999999999998853 3455544 488999999999998765
No 119
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.08 E-value=1.6e-09 Score=105.04 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=92.3
Q ss_pred cccccCCcCCHHHHHHHHhhhHhhccCccCC---HHH----HHhhc----CeEEEEEECCEEEEEEEEEEecC-CCeEEE
Q 007275 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRT---DEE----LLKAL----DSFYVVEREGQIIACAALFPFFK-EKCGEV 516 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~---~e~----l~~~i----~~~~V~~~dg~IVG~~~l~~~~~-~~~~eI 516 (609)
..+|+++.+|++.+.++..+.....+..... ..+ +.... ...|++..++++||++.+..... ...+++
T Consensus 7 l~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~~~~~~~ 86 (186)
T PRK15130 7 VKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEF 86 (186)
T ss_pred eEEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeecCCCCeEEE
Confidence 4699999999999999976654322221111 111 11111 34677788999999999875432 345667
Q ss_pred EEEEEcccCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 517 AAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 517 ~~iaV~p~~RgqGiG~~LL~~l~~~A~~-~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
.++|+|+|||+|+|+++++.+++++.+ .++++|.+.+ .++.+||+|+||+..+..
T Consensus 87 -~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~ 146 (186)
T PRK15130 87 -QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGEL 146 (186)
T ss_pred -EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEEE
Confidence 599999999999999999999999975 7999999887 378999999999998764
No 120
>PRK01346 hypothetical protein; Provisional
Probab=99.05 E-value=1.4e-09 Score=118.81 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=92.4
Q ss_pred cccccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhh---c--CeEEEEEECCEEEEEEEEEEec-----C--CCeE
Q 007275 447 LYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKA---L--DSFYVVEREGQIIACAALFPFF-----K--EKCG 514 (609)
Q Consensus 447 ~~~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~---i--~~~~V~~~dg~IVG~~~l~~~~-----~--~~~~ 514 (609)
|..+||+++.+|++.+.++....... ..+.+.+..+ . ..+++++++++++|++.+.+.. . -...
T Consensus 5 ~~~~iR~~~~~D~~~i~~L~~~~f~~----~~~~~~~~~~~~~~~~~~~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~ 80 (411)
T PRK01346 5 MAITIRTATEEDWPAWFRAAATGFGD----SPSDEELEAWRALVEPDRTLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAA 80 (411)
T ss_pred CCceeecCCHHHHHHHHHHHHHHcCC----CCChHHHHHHHHhcCcCCeEEEEECCEEEEEEEEeccccccCCCCcccee
Confidence 44579999999999999997654322 1122222222 1 3567888899999999987532 1 1468
Q ss_pred EEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeHHHHHHHHHCCCeEee
Q 007275 515 EVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECS 570 (609)
Q Consensus 515 eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~~a~~fYek~GF~~~~ 570 (609)
+|..++|+|+|||+|+|++||+.+++.+++.|+..+.+.+. ..+||+++||..+.
T Consensus 81 ~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~-~~~~Y~r~Gf~~~~ 135 (411)
T PRK01346 81 GVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTAS-EGGIYGRFGYGPAT 135 (411)
T ss_pred EEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECC-chhhHhhCCCeecc
Confidence 89999999999999999999999999999999988888763 35899999999774
No 121
>PHA01807 hypothetical protein
Probab=99.03 E-value=4.4e-09 Score=99.30 Aligned_cols=111 Identities=19% Similarity=0.165 Sum_probs=79.8
Q ss_pred CCcCCHHHHHHHHhhhHhhccC-ccCC--H---HHHHhhc----CeEEEEEECCEEEEEEEEEEecCCCeE---EEEEEE
Q 007275 454 AKVTDLSGIKQIIQPLVESGAL-VRRT--D---EELLKAL----DSFYVVEREGQIIACAALFPFFKEKCG---EVAAIG 520 (609)
Q Consensus 454 a~~~D~~~I~~L~~~~~~~~~~-~~~~--~---e~l~~~i----~~~~V~~~dg~IVG~~~l~~~~~~~~~---eI~~ia 520 (609)
++.+|++.+..+......+... .+|. . +.+.+.. ...++++.|++++||+.+.+....... .+..|+
T Consensus 9 ~~~~d~~~~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lY 88 (153)
T PHA01807 9 AKAGTPSELQGLCWLAIQELEEFTLFRSKEEALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQY 88 (153)
T ss_pred hhhCCHHHHHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEE
Confidence 6778888888887664333211 1111 1 2222221 335777889999999998754333223 345689
Q ss_pred EcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHC
Q 007275 521 VSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSR 564 (609)
Q Consensus 521 V~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~ 564 (609)
|+|+|||+|+|++||+.++++|++.|+..+.+.+ .++.+||++.
T Consensus 89 V~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 89 VLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHhc
Confidence 9999999999999999999999999999998888 3899999983
No 122
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.02 E-value=5.7e-09 Score=108.41 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=89.7
Q ss_pred cccccCC-cCCHHHHHHHHhhhHhhcc-CccCCHHHHHhhc-------CeEEEEEE--CCEEEEEEEEEEecC-CCeEEE
Q 007275 449 EGTRTAK-VTDLSGIKQIIQPLVESGA-LVRRTDEELLKAL-------DSFYVVER--EGQIIACAALFPFFK-EKCGEV 516 (609)
Q Consensus 449 ~~IR~a~-~~D~~~I~~L~~~~~~~~~-~~~~~~e~l~~~i-------~~~~V~~~--dg~IVG~~~l~~~~~-~~~~eI 516 (609)
.++|+++ ..|.+.+.++.+....... ...|+.+.+.... ..++++.+ ++++|||+.+..... ...++|
T Consensus 150 ~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i 229 (292)
T TIGR03448 150 VTVRAYVGAPDDAEWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPDEPALGEV 229 (292)
T ss_pred eEeeccCCCcchHHHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCCCCceeEE
Confidence 3678875 4588888877655443222 1345555554321 23566665 689999976553322 235678
Q ss_pred EEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeee
Q 007275 517 AAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 571 (609)
Q Consensus 517 ~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~ 571 (609)
..++|+|+|||||+|++||+.+++++++.|+..+.+.+ ..+.+||+|+||+..+.
T Consensus 230 ~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~ 288 (292)
T TIGR03448 230 YVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLGFTVAEV 288 (292)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHcCCEEccc
Confidence 78999999999999999999999999999999988877 37899999999998654
No 123
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=99.02 E-value=6e-09 Score=122.01 Aligned_cols=112 Identities=20% Similarity=0.230 Sum_probs=81.8
Q ss_pred hhHhcCCCCcceeEEEeecCCceeeeeecCcccCcCCcceeeE-eeeCHHHHHHHHhCC--CeEEEcCC-ccCCCCcEEE
Q 007275 194 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEV-KKVDVTRMRERLDGG--CLVILSNL-GYSSSGEVLN 269 (609)
Q Consensus 194 ~l~~~G~~~~~~av~l~~~d~~~l~ak~~~~~~~~d~g~~G~v-~~v~~~~I~~LL~~G--~IPVi~~~-~~~~~ge~~~ 269 (609)
.|++.|++ +..+++.+ ++.... + +...+ .....+.|++++..+ .|||+++. +.+..|++..
T Consensus 140 ~L~~~G~~----a~~ld~~~--~i~~~~--------~-~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~tt 204 (810)
T PRK09466 140 LLNQQGLP----AAWLDARS--FLRAER--------A-AQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGETVL 204 (810)
T ss_pred HHHhCCCC----cEEEcHHH--heecCC--------C-CCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCEEE
Confidence 47888887 55554433 333221 1 11122 122356788877654 79999986 6677888776
Q ss_pred e---cHHHHHHHHHHHcCCCEEEEEeccccc---C----CCCccccccCHHHHHHHHHhhc
Q 007275 270 C---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRV 320 (609)
Q Consensus 270 i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv---~----~~~~lI~~it~~e~~~l~~~~~ 320 (609)
+ -+|..|+.+|.+|+|+.+.|.|||||+ | |++++|++|+.+|+.+|..-|+
T Consensus 205 LGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~Ga 265 (810)
T PRK09466 205 LGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAA 265 (810)
T ss_pred cCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCc
Confidence 5 489999999999999999999999998 3 5689999999999999976544
No 124
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.01 E-value=1.3e-09 Score=113.52 Aligned_cols=76 Identities=26% Similarity=0.507 Sum_probs=68.2
Q ss_pred eEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeH-HHHHHHHHCCCe
Q 007275 489 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFR 567 (609)
Q Consensus 489 ~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~-~a~~fYek~GF~ 567 (609)
.+++.++++++|||+.+.. .+|..++|+|+|||+|+|++||+.++++|++.|++.+++.+. .+.+||+++||+
T Consensus 7 ~~~v~~~~~~iVG~~~l~~------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek~GF~ 80 (297)
T cd02169 7 TVGIFDDAGELIATGSIAG------NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRGLGFK 80 (297)
T ss_pred EEEEEEECCEEEEEEEecc------CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHHCCCE
Confidence 4667778899999998862 269999999999999999999999999999999999999984 578999999999
Q ss_pred Eee
Q 007275 568 ECS 570 (609)
Q Consensus 568 ~~~ 570 (609)
..+
T Consensus 81 ~~~ 83 (297)
T cd02169 81 ELA 83 (297)
T ss_pred Eec
Confidence 887
No 125
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.00 E-value=4.1e-09 Score=109.46 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=85.9
Q ss_pred ccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhc-------CeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEccc
Q 007275 452 RTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-------DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 524 (609)
Q Consensus 452 R~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i-------~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~ 524 (609)
.+++++|++++.+|+..........+++.+.. ..+ ...+++.+++++||++.+.+.. ....++..++|+|+
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~-~~~~~~~~l~V~p~ 81 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATAVDGVAPVSEQVL-RGLREPGAGHTRHLVAVDSDPIVGYANLVPAR-GTDPAMAELVVHPA 81 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCCCHHHH-hhccccCCCCceEEEEEECCEEEEEEEEEcCC-CCcceEEEEEECHh
Confidence 46788999999999887655543445665443 332 2367778889999999987542 33467999999999
Q ss_pred CcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeee
Q 007275 525 CRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 571 (609)
Q Consensus 525 ~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~ 571 (609)
|||+|+|++||+.+++.+. ..+.+.+ ..+++||+++||+....
T Consensus 82 ~rg~GiG~~Ll~~~~~~~~----~~~~~~~~~~n~~a~~fy~~~Gf~~~~~ 128 (292)
T TIGR03448 82 HRRRGIGRALIRALLAKGG----GRLRVWAHGDLPAARALASRLGLVPTRE 128 (292)
T ss_pred hcCCCHHHHHHHHHHHhcc----CceEEEEcCCCHHHHHHHHHCCCEEccE
Confidence 9999999999999999864 3344444 37899999999987753
No 126
>PRK13688 hypothetical protein; Provisional
Probab=98.99 E-value=2.4e-09 Score=101.58 Aligned_cols=107 Identities=19% Similarity=0.345 Sum_probs=77.5
Q ss_pred cccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhcCeEEEEEECCEEEEEEEEEEec---------CCCeEEEEEE
Q 007275 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFF---------KEKCGEVAAI 519 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i~~~~V~~~dg~IVG~~~l~~~~---------~~~~~eI~~i 519 (609)
..+|++..+|++++.++....... ..-..++++..+++++|++.+...+ .+..++|..+
T Consensus 18 ~~~~~~~~~dl~~l~~l~~~~f~~------------~~~~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l 85 (156)
T PRK13688 18 KKFREFGNQELSMLEELQANIIEN------------DSESPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKL 85 (156)
T ss_pred HHHHHhcHHHHHHHHhhhhhEeec------------CCCCCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEE
Confidence 357888888999998884332210 0113467788899999998875321 2456799999
Q ss_pred EEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe-HHHHHHHHHCCCeEeeee
Q 007275 520 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 520 aV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t-~~a~~fYek~GF~~~~~~ 572 (609)
+|+|+|||||+|++||+.+. +.++. +.+.+ ..+.+||+|+||+..+..
T Consensus 86 ~V~p~~rgkGiG~~Ll~~a~----~~~~~-~~~~~~~~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 86 EVLPKYQNRGYGEMLVDFAK----SFQLP-IKTIARNKSKDFWLKLGFTPVEYK 134 (156)
T ss_pred EECHHHcCCCHHHHHHHHHH----HhCCe-EEEEeccchHHHHHhCCCEEeEEe
Confidence 99999999999999998644 44544 33333 468899999999998766
No 127
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=98.99 E-value=9.2e-09 Score=94.22 Aligned_cols=118 Identities=20% Similarity=0.269 Sum_probs=86.9
Q ss_pred cccccCCcCCHHHHHHHHhhhHhhcc---Ccc-CCHHHHHhhc--------C---eEEEEEE--CCEEEEEEEEEE-ecC
Q 007275 449 EGTRTAKVTDLSGIKQIIQPLVESGA---LVR-RTDEELLKAL--------D---SFYVVER--EGQIIACAALFP-FFK 510 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~~~~~~---~~~-~~~e~l~~~i--------~---~~~V~~~--dg~IVG~~~l~~-~~~ 510 (609)
..||+++++|.+.+.++.++.....+ ... .+.+...+++ . .+|++.. ++++||++.+.. ...
T Consensus 2 l~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~~ 81 (142)
T PF13302_consen 2 LTLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDKN 81 (142)
T ss_dssp EEEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEETT
T ss_pred EEEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeecccC
Confidence 36899999999999999864333222 111 2544433333 1 2344543 357999999953 335
Q ss_pred CCeEEEEEEEEcccCcCCcHHHHHHHHHHHHH-HHCCCCEEEEEe----HHHHHHHHHCCCe
Q 007275 511 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA-ASLGLDMLFLLT----TRTADWFKSRGFR 567 (609)
Q Consensus 511 ~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A-~~~G~~~I~l~t----~~a~~fYek~GF~ 567 (609)
...++|+ +.|.|+|||+|+|+.++..+++++ ++.++.++.+.+ .++.++++|+||+
T Consensus 82 ~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 82 NNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred CCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 6789995 999999999999999999999999 578999999988 4899999999996
No 128
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.96 E-value=1.1e-08 Score=108.25 Aligned_cols=81 Identities=26% Similarity=0.441 Sum_probs=71.5
Q ss_pred hcCeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeH-HHHHHHHHC
Q 007275 486 ALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSR 564 (609)
Q Consensus 486 ~i~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~-~a~~fYek~ 564 (609)
.++.++++++|+++|||+.+.. ..|.+++|+|+|||+|+|++||+.+++++++.|+..+++.|. ...+||+++
T Consensus 29 ~~d~~vv~~~~~~lVg~g~l~g------~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~kl 102 (332)
T TIGR00124 29 PLEIFIAVYEDEEIIGCGGIAG------NVIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEYC 102 (332)
T ss_pred CCCEEEEEEECCEEEEEEEEec------CEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHHc
Confidence 3466788889999999999852 258899999999999999999999999999999999999994 567899999
Q ss_pred CCeEeeee
Q 007275 565 GFRECSIE 572 (609)
Q Consensus 565 GF~~~~~~ 572 (609)
||......
T Consensus 103 GF~~i~~~ 110 (332)
T TIGR00124 103 GFKTLAEA 110 (332)
T ss_pred CCEEeeee
Confidence 99987654
No 129
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=98.93 E-value=1.6e-08 Score=98.79 Aligned_cols=123 Identities=12% Similarity=0.071 Sum_probs=88.9
Q ss_pred cccccCCcCCHHHHHHHHhhhHh--hccCccC-----CHHH-------HHhhc----CeEEEEEE--CCEEEEEEEEEEe
Q 007275 449 EGTRTAKVTDLSGIKQIIQPLVE--SGALVRR-----TDEE-------LLKAL----DSFYVVER--EGQIIACAALFPF 508 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~~~--~~~~~~~-----~~e~-------l~~~i----~~~~V~~~--dg~IVG~~~l~~~ 508 (609)
..||+++.+|.+.+.+++.+... ..+.... ..+. +.... ...|++.. ++++||++.+...
T Consensus 18 l~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~l~~~ 97 (194)
T PRK10809 18 LVVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEIIGVANFSNV 97 (194)
T ss_pred EEEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEEEEEEEEee
Confidence 46999999999999999875221 1111110 0111 11111 22455543 6799999999754
Q ss_pred cCC--CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 509 FKE--KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 509 ~~~--~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~-~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
... ..++| .+.|+|+|||||+|+.+++.++++|.+ .|+++|.+.+ .++.++|+|+||+..+..
T Consensus 98 ~~~~~~~~ei-g~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~ 167 (194)
T PRK10809 98 VRGSFHACYL-GYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGYA 167 (194)
T ss_pred cCCCeeeEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEeee
Confidence 321 34566 688999999999999999999999987 6999999988 489999999999987754
No 130
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.68 E-value=6.5e-08 Score=88.34 Aligned_cols=93 Identities=25% Similarity=0.327 Sum_probs=74.5
Q ss_pred HHHHhhcCeEEEEEECCEEEEEEEEEEecC-CCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCC-CCEEEEEeH-HH
Q 007275 481 EELLKALDSFYVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG-LDMLFLLTT-RT 557 (609)
Q Consensus 481 e~l~~~i~~~~V~~~dg~IVG~~~l~~~~~-~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G-~~~I~l~t~-~a 557 (609)
.++.....++|+...||++++|+.+.|... .....|++++|+|++||+|+|.+||..+++.+.+.. -+.+.+.+. ..
T Consensus 43 ~Dl~~~~~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahL 122 (155)
T COG2153 43 KDLLGDTRHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHL 122 (155)
T ss_pred cccccccceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHH
Confidence 344445567777777999999999986432 233679999999999999999999999999998865 445777763 68
Q ss_pred HHHHHHCCCeEeeeec
Q 007275 558 ADWFKSRGFRECSIEM 573 (609)
Q Consensus 558 ~~fYek~GF~~~~~~~ 573 (609)
.+||.++||..++...
T Consensus 123 q~fYa~~GFv~~~e~y 138 (155)
T COG2153 123 QDFYASFGFVRVGEEY 138 (155)
T ss_pred HHHHHHhCcEEcCchh
Confidence 8999999999987664
No 131
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=98.61 E-value=1.6e-07 Score=87.78 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=70.8
Q ss_pred EECCEEEEEEEEEEecC-CCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeHHHHHHHHHCCCeEeeee
Q 007275 494 EREGQIIACAALFPFFK-EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIE 572 (609)
Q Consensus 494 ~~dg~IVG~~~l~~~~~-~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~~a~~fYek~GF~~~~~~ 572 (609)
+...++||-..+.+... +....+..++|+.+.||+|+|+.||+.++.||+..|++.++|.|..-.+||+++||+.++..
T Consensus 63 E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ~~FYe~lGYe~c~Pi 142 (225)
T KOG3397|consen 63 EENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQCRFYESLGYEKCDPI 142 (225)
T ss_pred ccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccchhhhhhhcccccCce
Confidence 56788999999987544 45678999999999999999999999999999999999999999888999999999988654
No 132
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=98.52 E-value=1.1e-07 Score=87.67 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=96.2
Q ss_pred ccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhcCeEEEEE-ECCEEEEEEEEEEec----CCCeEEEEEEEEccc
Q 007275 450 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVE-REGQIIACAALFPFF----KEKCGEVAAIGVSPE 524 (609)
Q Consensus 450 ~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i~~~~V~~-~dg~IVG~~~l~~~~----~~~~~eI~~iaV~p~ 524 (609)
.||.++.+|+-......-.-..+.+......-....|....||++ .+|+|||++-..... +...++|..++|...
T Consensus 3 ~iR~ar~~DL~~mQ~~Nl~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs 82 (193)
T KOG3235|consen 3 NIRRARPDDLLEMQHCNLLNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRS 82 (193)
T ss_pred ccccCCHHHHHHhhhcccccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhh
Confidence 589999998877665422211122222222223334556677887 689999998776332 335789999999999
Q ss_pred CcCCcHHHHHHHHHHHHHHH-CCCCEEEEEe----HHHHHHHH-HCCCeEeeeecchhHhhhhcccCCCceeEEeecC
Q 007275 525 CRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFK-SRGFRECSIEMIPEERRKRINLSRNSKYYMKKLL 596 (609)
Q Consensus 525 ~RgqGiG~~LL~~l~~~A~~-~G~~~I~l~t----~~a~~fYe-k~GF~~~~~~~lp~~~~~~y~~~~~s~i~mkkll 596 (609)
||+.|++++||....+-..+ .+.+.+.|.+ -.|..+|. .+||++++.+. .|.......+-|++-|
T Consensus 83 ~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~-------kYYadGedAyaM~~~L 153 (193)
T KOG3235|consen 83 YRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEP-------KYYADGEDAYAMRKDL 153 (193)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeeccc-------ccccccHHHHHHHHHH
Confidence 99999999999998776544 5677777777 25789999 79999987762 3444555666666554
No 133
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=98.51 E-value=3.8e-07 Score=84.34 Aligned_cols=123 Identities=21% Similarity=0.159 Sum_probs=100.2
Q ss_pred ccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhcCeEEEEEE-CCEEEEEEEEEEe--cCCCeEEEEEEEEcccCc
Q 007275 450 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVER-EGQIIACAALFPF--FKEKCGEVAAIGVSPECR 526 (609)
Q Consensus 450 ~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i~~~~V~~~-dg~IVG~~~l~~~--~~~~~~eI~~iaV~p~~R 526 (609)
++||++.+|+...-.+.-+...+.+........+..|...+.+++. +++|.|++.=... .....+++..+.|.|+||
T Consensus 3 t~r~f~~~Dlf~fNninLDpltEt~~~~Fyl~yl~~~pe~~~~a~~p~~~imgyimgk~Eg~~~~wh~HvTAltVap~~R 82 (173)
T KOG3234|consen 3 TIRPFTPQDLFKFNNINLDPLTETFPISFYLIYLAIWPEDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHVTALTVAPDYR 82 (173)
T ss_pred ccccccHHHHHhhccccccccccccceehhHHHHHhChHHhEeccCCCCceEEEEeeeccccCcceeeEEEEEEechhHH
Confidence 6899999999888888777777788878888888888888888875 5789998866421 223557899999999999
Q ss_pred CCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 527 GQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 527 gqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
+.|+|+.||+.+++-....+...+.+.+ +.|+.+|+++||......
T Consensus 83 rl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~V 132 (173)
T KOG3234|consen 83 RLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKKLGYSVYRTV 132 (173)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHhcCceEEEee
Confidence 9999999999999999877666666655 479999999999987654
No 134
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=98.46 E-value=2.7e-07 Score=89.13 Aligned_cols=147 Identities=18% Similarity=0.225 Sum_probs=97.3
Q ss_pred cccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhcCeEEEEEECCEEEEEEEEEEecCC---------CeEEEEEE
Q 007275 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKE---------KCGEVAAI 519 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i~~~~V~~~dg~IVG~~~l~~~~~~---------~~~eI~~i 519 (609)
+.++..++.|+..+.++.++.....+...+.++.... -+..-++.-++..+|-.++...... ...+|-.+
T Consensus 17 ~~l~~it~~nl~~~~~l~~~~fP~~y~~kfy~~~~~~-~~~~~~A~~~~~~v~a~~~k~~~~~~~~~r~~~~~~~yi~~L 95 (187)
T KOG3138|consen 17 IELRLITPNNLKQLKQLNEDIFPISYVDKFYPDVLSN-GDLTQLAYYNEIAVGAVACKLIKFVQNAKRLFGNRVIYILSL 95 (187)
T ss_pred eeeccCCcchHHHHHHHhccccCcchHHHHHHHHHhc-CCHHHhhhhccccccceeeeehhhhhhhhhhhccceeEEEee
Confidence 5699999999999999977665555443322222211 1212223333444444444321111 13789999
Q ss_pred EEcccCcCCcHHHHHHHHHHHHHHHCC-CCEEEEEe----HHHHHHHHHCCCeEeeeecchhHhhhhcc-cCCCceeEEe
Q 007275 520 GVSPECRGQGQGDKLLDYIEKKAASLG-LDMLFLLT----TRTADWFKSRGFRECSIEMIPEERRKRIN-LSRNSKYYMK 593 (609)
Q Consensus 520 aV~p~~RgqGiG~~LL~~l~~~A~~~G-~~~I~l~t----~~a~~fYek~GF~~~~~~~lp~~~~~~y~-~~~~s~i~mk 593 (609)
.|.|.||.+|||++||+.++++|.+.. ++.+++.+ ..+..||+++||+.+.....- |. .......+|.
T Consensus 96 gvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~------y~~~~~~~~~~l~ 169 (187)
T KOG3138|consen 96 GVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNY------YSILGPPDDSFLR 169 (187)
T ss_pred cccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccccc------cccccCcchhhhh
Confidence 999999999999999999999999877 88899987 378999999999998655211 11 2234556666
Q ss_pred ecCCCCCCC
Q 007275 594 KLLPDTSGI 602 (609)
Q Consensus 594 kll~~~~g~ 602 (609)
+.+.+.+|-
T Consensus 170 ~~~~~~~~~ 178 (187)
T KOG3138|consen 170 KLLIHGSGS 178 (187)
T ss_pred hheecCCCC
Confidence 666665543
No 135
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.45 E-value=1.6e-06 Score=73.91 Aligned_cols=58 Identities=28% Similarity=0.472 Sum_probs=48.4
Q ss_pred EEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 514 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 514 ~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
++|..++|+|+|||+|+|+.|+..+.+.+.+.|... ++.+ ..+.++|+|+||+.....
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~-~l~v~~~N~~s~~ly~klGf~~~~~~ 83 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTP-FLYVDADNEASIRLYEKLGFREIEEE 83 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEE-EEEEETT-HHHHHHHHHCT-EEEEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcE-EEEEECCCHHHHHHHHHcCCEEEEEE
Confidence 789999999999999999999999999999888764 3443 378999999999998654
No 136
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=98.43 E-value=1.1e-06 Score=83.76 Aligned_cols=116 Identities=18% Similarity=0.174 Sum_probs=84.0
Q ss_pred CCHHHHHHHHhhhHhh-------ccCccCCHHHHHhhcCeEEEEEECC-EEEEEEEEEEecCCC--eEEEEEEEEcccCc
Q 007275 457 TDLSGIKQIIQPLVES-------GALVRRTDEELLKALDSFYVVEREG-QIIACAALFPFFKEK--CGEVAAIGVSPECR 526 (609)
Q Consensus 457 ~D~~~I~~L~~~~~~~-------~~~~~~~~e~l~~~i~~~~V~~~dg-~IVG~~~l~~~~~~~--~~eI~~iaV~p~~R 526 (609)
+|++-..+|...-... ++......+++...-..|+++.+++ +++||..+....+.+ ..++--+-|.++||
T Consensus 54 ~~ldw~f~L~k~nm~~~Y~qs~~Gw~~~~K~~El~~~~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR 133 (202)
T KOG2488|consen 54 EDLDWCFSLFKKNMGAMYRQSSWGWDDNSKAKELRNRKLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYR 133 (202)
T ss_pred HHHHHHHHHHHhhhHHHhhhcccccCchhHHHHHhhccceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhh
Confidence 5666666766542111 1211112334444446778887776 899999998544444 56666778889999
Q ss_pred CCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 527 GQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 527 gqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
|+|||+.||+.++..+.....+.|.|++ .++..||+++||......
T Consensus 134 ~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~~~gf~~~~~s 183 (202)
T KOG2488|consen 134 GKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYHRLGFVVDEES 183 (202)
T ss_pred ccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHHHcCcccCCCC
Confidence 9999999999999999988888888877 489999999999876543
No 137
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.40 E-value=1.7e-06 Score=66.32 Aligned_cols=62 Identities=34% Similarity=0.483 Sum_probs=54.2
Q ss_pred EEEEECCEEEEEEEEEEecC-CCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEE
Q 007275 491 YVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFL 552 (609)
Q Consensus 491 ~V~~~dg~IVG~~~l~~~~~-~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l 552 (609)
+++..+++++|++.+.+... ....++..++|+|+|||+|+|++|+..+++++.+.+++.+.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 45667899999999986432 467899999999999999999999999999999999998876
No 138
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=98.30 E-value=3.3e-06 Score=84.86 Aligned_cols=83 Identities=22% Similarity=0.307 Sum_probs=67.4
Q ss_pred eEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEE-e--HHHHHHHHHCC
Q 007275 489 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLL-T--TRTADWFKSRG 565 (609)
Q Consensus 489 ~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~-t--~~a~~fYek~G 565 (609)
..+..+.||+||+.+... ...+.++.|..++++|+|||+|+++.|+..+.+..-..|.+.+... + ..|.+.|++.|
T Consensus 178 ~~~f~~~d~~iVa~A~t~-a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~riG 256 (268)
T COG3393 178 RTYFLEGDGKIVAKAETA-AENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQRIG 256 (268)
T ss_pred eEEEEccCCcEEEeeecc-ccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHHhC
Confidence 344455567999999877 3456789999999999999999999999999999888887654333 3 46899999999
Q ss_pred CeEeeee
Q 007275 566 FRECSIE 572 (609)
Q Consensus 566 F~~~~~~ 572 (609)
|+..+..
T Consensus 257 F~~~g~~ 263 (268)
T COG3393 257 FREIGEF 263 (268)
T ss_pred CeecceE
Confidence 9998744
No 139
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.29 E-value=3.9e-06 Score=93.89 Aligned_cols=84 Identities=18% Similarity=0.291 Sum_probs=64.9
Q ss_pred eEEEEEE---CCEEEEEEEEEEecC-------CCeEEEEEEEE-----------cccCcCCcHHHHHHHHHHHHHHHCCC
Q 007275 489 SFYVVER---EGQIIACAALFPFFK-------EKCGEVAAIGV-----------SPECRGQGQGDKLLDYIEKKAASLGL 547 (609)
Q Consensus 489 ~~~V~~~---dg~IVG~~~l~~~~~-------~~~~eI~~iaV-----------~p~~RgqGiG~~LL~~l~~~A~~~G~ 547 (609)
.+|.... ++.++||+.+....+ +.++.|..+.| +|+|||+|+|++||++++++|++.|+
T Consensus 412 e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~ 491 (522)
T TIGR01211 412 EFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGS 491 (522)
T ss_pred eEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCC
Confidence 3444443 578999999984322 12444554443 59999999999999999999999999
Q ss_pred CEEEEEe-HHHHHHHHHCCCeEeeee
Q 007275 548 DMLFLLT-TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 548 ~~I~l~t-~~a~~fYek~GF~~~~~~ 572 (609)
+.+.+.+ ..+.+||+++||+..+..
T Consensus 492 ~~i~v~s~~~A~~FY~klGf~~~g~y 517 (522)
T TIGR01211 492 EKILVISGIGVREYYRKLGYELDGPY 517 (522)
T ss_pred CEEEEeeCchHHHHHHHCCCEEEcce
Confidence 9999877 479999999999986543
No 140
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=1.6e-05 Score=75.42 Aligned_cols=76 Identities=21% Similarity=0.256 Sum_probs=65.8
Q ss_pred CEEEEEEEEEEecC---CCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEe----HHHHHHHHHCCCeE
Q 007275 497 GQIIACAALFPFFK---EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRE 568 (609)
Q Consensus 497 g~IVG~~~l~~~~~---~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~-~G~~~I~l~t----~~a~~fYek~GF~~ 568 (609)
+++||.+.+..... ...++| .+.+.|+|+|||+|++.+..+++++.. .+++++.+.+ .++.+.++|+||+.
T Consensus 77 ~~~iG~~~~~~~~~~~~~~~~~i-g~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~ 155 (187)
T COG1670 77 GELIGVIGLSDIDRAANGDLAEI-GYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRL 155 (187)
T ss_pred CeEEEEEEEEEeccccccceEEE-EEEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChh
Confidence 48999999986552 566777 667799999999999999999999976 8999999988 48999999999999
Q ss_pred eeeec
Q 007275 569 CSIEM 573 (609)
Q Consensus 569 ~~~~~ 573 (609)
.+...
T Consensus 156 eg~~~ 160 (187)
T COG1670 156 EGELR 160 (187)
T ss_pred hhhhh
Confidence 87654
No 141
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.19 E-value=1.6e-05 Score=66.46 Aligned_cols=70 Identities=24% Similarity=0.307 Sum_probs=58.0
Q ss_pred EEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeHHHHHHHHHC
Q 007275 492 VVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSR 564 (609)
Q Consensus 492 V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~~a~~fYek~ 564 (609)
.+..||+.+|++.+.. +++...|....|.|++||||+|++|++.+.++|++.|.+ |...|.-+..|++++
T Consensus 3 ~~~~~g~~~a~l~Y~~--~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~k-v~p~C~y~~~~~~~h 72 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE--DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLK-VVPTCSYVAKYFRRH 72 (78)
T ss_dssp EEESSTTEEEEEEEEE--SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-E-EEETSHHHHHHHHH-
T ss_pred EEEECCEEEEEEEEEe--CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCE-EEEECHHHHHHHHhC
Confidence 3455688999998863 678899999999999999999999999999999999874 557788888998875
No 142
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=98.17 E-value=1.8e-05 Score=74.77 Aligned_cols=86 Identities=19% Similarity=0.310 Sum_probs=71.4
Q ss_pred eEEEEEECCEEEEEEEEEEecCC----CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeH----HHHHH
Q 007275 489 SFYVVEREGQIIACAALFPFFKE----KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT----RTADW 560 (609)
Q Consensus 489 ~~~V~~~dg~IVG~~~l~~~~~~----~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~----~a~~f 560 (609)
.||.+..|+++||++.+.....+ .-++| ...|.|..||+|+|+++++.++++|++.|++.+.+.|. .+++-
T Consensus 70 ~y~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHI-GY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkv 148 (174)
T COG3981 70 TYWAVDEDGQIVGFINLRHQLNDFLLEEGGHI-GYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKV 148 (174)
T ss_pred eEEEEecCCcEEEEEEeeeecchHHHhcCCcc-cceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHH
Confidence 46666678999999999843322 35678 78999999999999999999999999999999999983 78899
Q ss_pred HHHCCCeEeeeecch
Q 007275 561 FKSRGFRECSIEMIP 575 (609)
Q Consensus 561 Yek~GF~~~~~~~lp 575 (609)
-+++|=...+.....
T Consensus 149 I~~NGGile~~~~~~ 163 (174)
T COG3981 149 IEANGGILENEFFGE 163 (174)
T ss_pred HHhcCCEEeEEEccC
Confidence 999998877665433
No 143
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=98.12 E-value=8.7e-05 Score=77.22 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=62.5
Q ss_pred HHHHHHHh----CCCeEEEcCCccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEeccccc--C------CCCccccc
Q 007275 242 TRMRERLD----GGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL--D------ESGHLIRF 306 (609)
Q Consensus 242 ~~I~~LL~----~G~IPVi~~~~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv--~------~~~~lI~~ 306 (609)
+.|.+.+. .+.|||+.+.+....|++..+ -+|..|+.+|.+|+|+.+.|-|||+.. | +++++|++
T Consensus 177 ~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itTLGRGGSDyTAs~iAa~l~A~ev~I~TDV~i~taDPriV~~~~A~~i~~ 256 (304)
T cd04248 177 ERISEAFRDIDPRDELPIVTGYAKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFHLSSADPKLVGEDKARPIGR 256 (304)
T ss_pred HHHHHHHHhhccCCcEEEeCCccCCCCCCEEEcCCCcHHHHHHHHHHHcCCCEEEEECCCceecCCCCccCCCCceEeCc
Confidence 34454444 578999999866667888765 489999999999999999999999722 2 46789999
Q ss_pred cCHHHHHHHHHhh
Q 007275 307 LTLQEADSLIRQR 319 (609)
Q Consensus 307 it~~e~~~l~~~~ 319 (609)
++.+|+.+|..-|
T Consensus 257 lsY~EA~ELA~~G 269 (304)
T cd04248 257 TNYDVADQLANLG 269 (304)
T ss_pred cCHHHHHHHHHcC
Confidence 9999999997544
No 144
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.09 E-value=4.4e-05 Score=74.66 Aligned_cols=103 Identities=22% Similarity=0.333 Sum_probs=65.4
Q ss_pred CeEEEEEECC--EEEEEEEEEEec-----------------C-------------------CCeEEEEEEEEcccCcCCc
Q 007275 488 DSFYVVEREG--QIIACAALFPFF-----------------K-------------------EKCGEVAAIGVSPECRGQG 529 (609)
Q Consensus 488 ~~~~V~~~dg--~IVG~~~l~~~~-----------------~-------------------~~~~eI~~iaV~p~~RgqG 529 (609)
+..|+...++ +|+|++.+.... . -....|-+|+|+|++|++|
T Consensus 27 h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~~G 106 (196)
T PF13718_consen 27 HRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQRMG 106 (196)
T ss_dssp EEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-SSS
T ss_pred ceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhhcCC
Confidence 5678888888 999998875310 0 1346788999999999999
Q ss_pred HHHHHHHHHHHHH-------------------------HHCCCCEEEEE---eHHHHHHHHHCCCeEeeeecchhHhhhh
Q 007275 530 QGDKLLDYIEKKA-------------------------ASLGLDMLFLL---TTRTADWFKSRGFRECSIEMIPEERRKR 581 (609)
Q Consensus 530 iG~~LL~~l~~~A-------------------------~~~G~~~I~l~---t~~a~~fYek~GF~~~~~~~lp~~~~~~ 581 (609)
+|++|++.+++++ +..++..+-+. |..-.+||.|+||..+..-..++.
T Consensus 107 ~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k~gf~pv~l~~~~n~---- 182 (196)
T PF13718_consen 107 YGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQKNGFVPVYLGQTRNE---- 182 (196)
T ss_dssp HHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHCTT-EEEEE-SS--T----
T ss_pred HHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHHCCcEEEEEecCccc----
Confidence 9999999999999 35667665443 246789999999999876543321
Q ss_pred cccCCCceeEEeec
Q 007275 582 INLSRNSKYYMKKL 595 (609)
Q Consensus 582 y~~~~~s~i~mkkl 595 (609)
.....|.+|+|.+
T Consensus 183 -~SGe~S~imlr~l 195 (196)
T PF13718_consen 183 -ASGEHSAIMLRPL 195 (196)
T ss_dssp -TT---EEEEEEE-
T ss_pred -ccCceeeeEEeec
Confidence 1234577777764
No 145
>PRK09181 aspartate kinase; Validated
Probab=98.06 E-value=0.00012 Score=81.35 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=64.7
Q ss_pred HHHHHHHHh----CCCeEEEcCCccCCCCcEEEe---cHHHHHHHHHHHcCCCEEEEEeccccc---C------CCCccc
Q 007275 241 VTRMRERLD----GGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D------ESGHLI 304 (609)
Q Consensus 241 ~~~I~~LL~----~G~IPVi~~~~~~~~ge~~~i---d~D~lAa~lA~~L~Ad~LIiLTDvdgv---~------~~~~lI 304 (609)
.+.|...++ .+.|||+.+...+..|++..+ -+|..|+.+|.+|+||.+.+-|||+ + | +++++|
T Consensus 182 ~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTLGRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i 260 (475)
T PRK09181 182 DERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPI 260 (475)
T ss_pred HHHHHHHHhhhccCCcEEEecCCcCCCCCCEEecCCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEc
Confidence 345666666 478999999865667887765 4899999999999999999999997 5 2 468899
Q ss_pred cccCHHHHHHHHHhhc
Q 007275 305 RFLTLQEADSLIRQRV 320 (609)
Q Consensus 305 ~~it~~e~~~l~~~~~ 320 (609)
++|+.+|+.+|..-|+
T Consensus 261 ~~lsy~Ea~ELA~~GA 276 (475)
T PRK09181 261 GRTNYDVADQLANLGM 276 (475)
T ss_pred CccCHHHHHHHHHcCc
Confidence 9999999999975543
No 146
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.99 E-value=5.8e-05 Score=76.58 Aligned_cols=109 Identities=24% Similarity=0.331 Sum_probs=85.6
Q ss_pred ccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhcCeEEEEEE-CCEEEEEEEEEEecCCCeEEEEEEEEcccCcCC
Q 007275 450 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVER-EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 528 (609)
Q Consensus 450 ~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i~~~~V~~~-dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~Rgq 528 (609)
.++.+.++|...+..+..-+.+++.. +...++.+.++.. |++||+|..+.- .-|.|++|+|.+||-
T Consensus 5 ~~~~v~~~e~~k~~~i~~fL~~~~l~-------~d~~ve~~v~~~~~~~~iiacGsiaG------nvikcvAvs~s~qGe 71 (352)
T COG3053 5 TFSRVKRSEKKKMAEIAEFLHQNDLR-------VDTTVEYFVAIYRDNEEIIACGSIAG------NVIKCVAVSESLQGE 71 (352)
T ss_pred EEEEEccchhhHHHHHHHHHhhcCce-------ecccceEEEEEEcCCCcEEEeccccc------ceeEEEEechhcccc
Confidence 46667777777777665445554442 2234455555655 499999999872 258899999999999
Q ss_pred cHHHHHHHHHHHHHHHCCCCEEEEEe-HHHHHHHHHCCCeEeee
Q 007275 529 GQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 571 (609)
Q Consensus 529 GiG~~LL~~l~~~A~~~G~~~I~l~t-~~a~~fYek~GF~~~~~ 571 (609)
|+.-+|+..+.+++-++|...+|+.| +....||..+||.+...
T Consensus 72 Gl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~~GF~~i~~ 115 (352)
T COG3053 72 GLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQCGFSEIAS 115 (352)
T ss_pred cHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHhCCceEeec
Confidence 99999999999999999999999999 46789999999998753
No 147
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=97.73 E-value=9.7e-05 Score=70.95 Aligned_cols=132 Identities=20% Similarity=0.280 Sum_probs=82.2
Q ss_pred hhhhhhhcCCCcccccccccc-ccccCCcC-CHHHHHHHHhhhHhhccCccCCHHHHHhhcCeEEEEEECCEEEEEEEEE
Q 007275 429 LLLELFKRDGMGTMVASDLYE-GTRTAKVT-DLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALF 506 (609)
Q Consensus 429 ll~el~~~~g~GT~i~~d~~~-~IR~a~~~-D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i~~~~V~~~dg~IVG~~~l~ 506 (609)
|..||||..|.||+|.....+ .......- |.+.|.+++.+............+.+...+...|+ ++..-|.+.+.
T Consensus 2 L~kELFt~sgagTlirrG~~i~~~~s~~~~~d~~kL~~ll~~sf~~~~~v~~yl~~l~~~~~~iy~---d~~y~~~AIVt 78 (170)
T PF04768_consen 2 LQKELFTDSGAGTLIRRGYKILKHSSLSEFVDLDKLRALLERSFGGKLDVDHYLDRLNNRLFKIYV---DEDYEGAAIVT 78 (170)
T ss_dssp HHHHHHSSSTSSEEEE----EEEESSCCCSS-HHHHHHHHHHHSTSSSBHTTHHHHHHTS-SEEEE---ETTSSEEEEEE
T ss_pred ccchhcCCCCCceEEecCeeeEEecCccccCCHHHHHHHHHhcccccccHHHHHHHhhccceEEEE---eCCceEEEEEE
Confidence 778999999999999976554 34445555 89999999877653222233333333333333333 34455555665
Q ss_pred E---ecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe---HHHHHHHHH--CCCeE
Q 007275 507 P---FFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWFKS--RGFRE 568 (609)
Q Consensus 507 ~---~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t---~~a~~fYek--~GF~~ 568 (609)
+ ......++|..++|.|..||.|++..++..+.+.. +.++..+ .+..+||-+ -|+-.
T Consensus 79 ~e~~~~~~~v~yLdKFav~~~~~g~gv~D~vf~~i~~d~-----p~L~Wrsr~~n~~~~Wyf~rs~G~~~ 143 (170)
T PF04768_consen 79 PEGPDSNGPVPYLDKFAVSKSAQGSGVADNVFNAIRKDF-----PKLFWRSREDNPNNKWYFERSDGSFK 143 (170)
T ss_dssp EE-SCTCTSEEEEEEEEE-HHHHHTTHHHHHHHHHHHH------SSEEEEEETT-TTHHHHHHH-SEEEE
T ss_pred ecCCCCCCCCeEEEEEEecchhhhcCHHHHHHHHHHHhc-----cceEEEecCCCCcccEEEEeeEEEEE
Confidence 3 23346899999999999999999999999986653 3355555 467788733 35544
No 148
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=97.68 E-value=0.00015 Score=65.27 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=92.9
Q ss_pred ccccccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhcCeEEEEEECCEEEEEEEEEEe----c----------CC
Q 007275 446 DLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPF----F----------KE 511 (609)
Q Consensus 446 d~~~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i~~~~V~~~dg~IVG~~~l~~~----~----------~~ 511 (609)
.|++.+|.....|..++..|.+....+-. ....+.+.......++++++|.+.||..-+.. + -+
T Consensus 5 smp~~~~D~~apd~aavLaLNNeha~els--wLe~erL~~l~~eAF~ArR~G~l~afl~tFd~~a~ydSpNFlWFrErYe 82 (167)
T COG3818 5 SMPILIRDVRAPDLAAVLALNNEHALELS--WLELERLYRLYKEAFVARRDGNLAAFLVTFDSSARYDSPNFLWFRERYE 82 (167)
T ss_pred ccceehhhhcCCchhhHHhccchhhhhcc--ccCHHHHHHHHHHHHHHhhccchhhheeeccccccCCCCceeehhhhCC
Confidence 45667788888899999888665332211 12233333333233577788887777654321 1 13
Q ss_pred CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeH------HHHHHHHHCCCeEeeeecchh
Q 007275 512 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT------RTADWFKSRGFRECSIEMIPE 576 (609)
Q Consensus 512 ~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~------~a~~fYek~GF~~~~~~~lp~ 576 (609)
...+++++.|...-||+|+|++|.+.+..+|+..|+..+.+.++ .+..|...+||.+++...+..
T Consensus 83 ~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ihg 153 (167)
T COG3818 83 NFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIHG 153 (167)
T ss_pred ceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEec
Confidence 56789999999999999999999999999999999999988882 456788889999999876553
No 149
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=97.52 E-value=0.0017 Score=66.79 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=65.5
Q ss_pred CCHHHHHhhcCeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe-HH
Q 007275 478 RTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TR 556 (609)
Q Consensus 478 ~~~e~l~~~i~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t-~~ 556 (609)
++.+++.+. ...|++..+++||+-+.-. ...++..+| .|.++|+|||||+++.+...++.+|.++|+.-.+--. ..
T Consensus 156 ~s~e~Fl~~-G~Gf~i~~~~~iVs~~~s~-~~~~~~~EI-~I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~N~~ 232 (265)
T PF12746_consen 156 SSYEDFLKN-GFGFCILHDGEIVSGCSSY-FVYENGIEI-DIETHPEYRGKGLATAVAAAFILECLENGLYPSWDCHNLA 232 (265)
T ss_dssp SSHHHHHHH---EEEEEETTEEEEEEEEE-EEETTEEEE-EEEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EESSHH
T ss_pred CCHHHHHhc-CcEEEEEECCEEEEEEEEE-EEECCEEEE-EEEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCCCHH
Confidence 356666554 5667888889987644333 233567899 8999999999999999999999999999987754322 47
Q ss_pred HHHHHHHCCCeEeeee
Q 007275 557 TADWFKSRGFRECSIE 572 (609)
Q Consensus 557 a~~fYek~GF~~~~~~ 572 (609)
+.++=+|+||+....-
T Consensus 233 S~~lA~kLGf~~~~~Y 248 (265)
T PF12746_consen 233 SIALAEKLGFHFDFEY 248 (265)
T ss_dssp HHHHHHHCT--EEEEE
T ss_pred HHHHHHHcCCccccee
Confidence 8999999999976543
No 150
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=97.50 E-value=0.00095 Score=60.51 Aligned_cols=104 Identities=16% Similarity=0.252 Sum_probs=66.0
Q ss_pred cCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhc---CeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCc
Q 007275 453 TAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQG 529 (609)
Q Consensus 453 ~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i---~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqG 529 (609)
.+++.|.-++.+++ ...+.+.+..++ ..+|++.=|+.++|.+.+.. ++..+.|..++|++--|++|
T Consensus 9 ~ls~Qd~iDL~KIw---------p~~~~~~l~~~l~~~~~l~aArFNdRlLgAv~v~~--~~~~~~L~~l~VRevTRrRG 77 (128)
T PF12568_consen 9 TLSEQDRIDLAKIW---------PQQDPEQLEQWLDEGHRLFAARFNDRLLGAVKVTI--SGQQAELSDLCVREVTRRRG 77 (128)
T ss_dssp S--HHHHHHHHHH----------TTS----------SSEEEEEEEETTEEEEEEEEEE--ETTEEEEEEEEE-TT-SSSS
T ss_pred CCCHHHHHHHHHhC---------CCCCHHHHHHHhccCCeEEEEEechheeeeEEEEE--cCcceEEeeEEEeecccccc
Confidence 45566666777775 222334444444 56888888999999998873 46799999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeH--------HHHHHHHHCCCeEe
Q 007275 530 QGDKLLDYIEKKAASLGLDMLFLLTT--------RTADWFKSRGFREC 569 (609)
Q Consensus 530 iG~~LL~~l~~~A~~~G~~~I~l~t~--------~a~~fYek~GF~~~ 569 (609)
+|..|++.+++.+. +++...+... ....|...+||...
T Consensus 78 VG~yLlee~~rq~p--~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~ 123 (128)
T PF12568_consen 78 VGLYLLEEVLRQLP--DIKHWWLADEGVEPQDRAVMAAFMQACGFSAQ 123 (128)
T ss_dssp HHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHHHHHHT-EE-
T ss_pred HHHHHHHHHHHHCC--CCcEEEEecCCCcccchHHHHHHHHHcCcccc
Confidence 99999999999883 3555555431 34689999999653
No 151
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=97.42 E-value=0.00039 Score=60.64 Aligned_cols=62 Identities=29% Similarity=0.408 Sum_probs=55.0
Q ss_pred CeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEE
Q 007275 488 DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDML 550 (609)
Q Consensus 488 ~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I 550 (609)
..+|+...+|+.+|.+..++ .+++...|.+-+|.+++||||+|++|++.+++.|++.|++.+
T Consensus 15 ~~~y~~~~~G~~~~e~~y~~-~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kii 76 (99)
T COG2388 15 NGRYVLTDEGEVIGEATYYD-RGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKII 76 (99)
T ss_pred ceEEEEecCCcEEEEEEEec-CCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEc
Confidence 56788899999999998884 456789999999999999999999999999999999988554
No 152
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.41 E-value=0.0016 Score=75.06 Aligned_cols=79 Identities=23% Similarity=0.298 Sum_probs=57.9
Q ss_pred eEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEE---eHHHHHHHHHCCCeEeeeecchhHhhhhcccCCCce
Q 007275 513 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLL---TTRTADWFKSRGFRECSIEMIPEERRKRINLSRNSK 589 (609)
Q Consensus 513 ~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~---t~~a~~fYek~GF~~~~~~~lp~~~~~~y~~~~~s~ 589 (609)
.+.|-+|+|+|++|++|||++|++.++++|+ .++..+-+. +....+||.|+||..+......+.. ....+.
T Consensus 531 G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~rnGF~pVhls~~rn~~-----SGeys~ 604 (758)
T COG1444 531 GWRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLRNGFVPVHLSPTRNAS-----SGEYTA 604 (758)
T ss_pred eeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHHcCeEEEEecCccCcC-----CCceeE
Confidence 3578899999999999999999999999997 445555432 2477899999999998765433211 123356
Q ss_pred eEEeecCC
Q 007275 590 YYMKKLLP 597 (609)
Q Consensus 590 i~mkkll~ 597 (609)
+++|-|..
T Consensus 605 i~lkpLs~ 612 (758)
T COG1444 605 IVLKPLSD 612 (758)
T ss_pred EEEecCCH
Confidence 66666543
No 153
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=97.14 E-value=0.00031 Score=64.99 Aligned_cols=78 Identities=15% Similarity=0.159 Sum_probs=57.1
Q ss_pred CCEEEEEEEEEEe--------------cCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHH-HHCCCCEEEEEe-HHHHH
Q 007275 496 EGQIIACAALFPF--------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA-ASLGLDMLFLLT-TRTAD 559 (609)
Q Consensus 496 dg~IVG~~~l~~~--------------~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A-~~~G~~~I~l~t-~~a~~ 559 (609)
.+.+||++.=... .++....|+.++|+|+||.||+|..|+..-++.. .+-=.+++.|.+ .+..+
T Consensus 70 ~~tLIghIigs~~~~E~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvP 149 (190)
T KOG4144|consen 70 EGTLIGHIIGSLWDKERLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVP 149 (190)
T ss_pred cccceehhhcccCcchhhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccc
Confidence 5677887653321 1234578999999999999999999987755544 333345666666 47899
Q ss_pred HHHHCCCeEeeeec
Q 007275 560 WFKSRGFRECSIEM 573 (609)
Q Consensus 560 fYek~GF~~~~~~~ 573 (609)
|||++||+.++...
T Consensus 150 FYEr~gFk~vgp~~ 163 (190)
T KOG4144|consen 150 FYERFGFKAVGPCA 163 (190)
T ss_pred hhHhcCceeecccc
Confidence 99999999998754
No 154
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=97.07 E-value=0.00085 Score=70.13 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=70.0
Q ss_pred CeEEEEEECCEEEEEEEEEEe--c-CC---CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeHHHHHHH
Q 007275 488 DSFYVVEREGQIIACAALFPF--F-KE---KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWF 561 (609)
Q Consensus 488 ~~~~V~~~dg~IVG~~~l~~~--~-~~---~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~~a~~fY 561 (609)
..++|++.|.++++-....|+ + .+ +++.|..+++.|+|||+|.-++||...++..++.|+...+|.. -+.+||
T Consensus 39 ~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P-~s~~iY 117 (389)
T COG4552 39 PNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHP-FSGGIY 117 (389)
T ss_pred CcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEecc-CchhhH
Confidence 578999999999988776652 1 12 4578999999999999999999999999999999998887754 578999
Q ss_pred HHCCCeEeee
Q 007275 562 KSRGFRECSI 571 (609)
Q Consensus 562 ek~GF~~~~~ 571 (609)
+|+||+....
T Consensus 118 rKfGye~asn 127 (389)
T COG4552 118 RKFGYEYASN 127 (389)
T ss_pred hhccccccce
Confidence 9999997754
No 155
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0074 Score=63.77 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=55.9
Q ss_pred CCCeEEEcCC-c-cCCCCcEE---EecHHHHHHHHHHHcCCCEEEEEeccccc-------CCCCccccccCHHHHHHHHH
Q 007275 250 GGCLVILSNL-G-YSSSGEVL---NCNTYEVATACALAIEADKLICIIDGPIL-------DESGHLIRFLTLQEADSLIR 317 (609)
Q Consensus 250 ~G~IPVi~~~-~-~~~~ge~~---~id~D~lAa~lA~~L~Ad~LIiLTDvdgv-------~~~~~lI~~it~~e~~~l~~ 317 (609)
.+.|||+.+. | ..++|-+. -+-+|..|+.+|.+|++|.+=+--||||+ +|.+++++.+|.+|+.+|.-
T Consensus 258 en~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaY 337 (559)
T KOG0456|consen 258 ENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAY 337 (559)
T ss_pred CCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHh
Confidence 4789999974 4 33444333 34579999999999999999999999988 36799999999999988864
Q ss_pred hh
Q 007275 318 QR 319 (609)
Q Consensus 318 ~~ 319 (609)
-|
T Consensus 338 fG 339 (559)
T KOG0456|consen 338 FG 339 (559)
T ss_pred hh
Confidence 44
No 156
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=96.98 E-value=0.0069 Score=58.97 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHhhhHhh--ccCcc----CCHHHHHhhcCeEEEEEECCEEEEEEEEEEecC-------------------
Q 007275 456 VTDLSGIKQIIQPLVES--GALVR----RTDEELLKALDSFYVVEREGQIIACAALFPFFK------------------- 510 (609)
Q Consensus 456 ~~D~~~I~~L~~~~~~~--~~~~~----~~~e~l~~~i~~~~V~~~dg~IVG~~~l~~~~~------------------- 510 (609)
.++++++.++....+.. ++..+ ...++|...-..|++...+|+++||+.+.|...
T Consensus 7 ~~~l~~~~rlR~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~ 86 (182)
T PF00765_consen 7 RRLLEEMFRLRHRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPR 86 (182)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---S
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCC
Confidence 34455666666554333 23221 223344443345666677899999999987211
Q ss_pred -CCeEEEEEEEEcccCcC------CcHHHHHHHHHHHHHHHCCCCEEEEEe-HHHHHHHHHCCCeEee
Q 007275 511 -EKCGEVAAIGVSPECRG------QGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 570 (609)
Q Consensus 511 -~~~~eI~~iaV~p~~Rg------qGiG~~LL~~l~~~A~~~G~~~I~l~t-~~a~~fYek~GF~~~~ 570 (609)
...+|+.+++|+|+.++ .-+...|+..+.++|.++|++.+...+ ....++|.+.||....
T Consensus 87 ~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~r~G~~~~~ 154 (182)
T PF00765_consen 87 SPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVDPAMERILRRAGWPVRR 154 (182)
T ss_dssp STTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHHHCT-EEEE
T ss_pred CCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHHHcCCceEE
Confidence 36799999999998532 247789999999999999999988877 4778999999998753
No 157
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=96.88 E-value=0.0016 Score=54.31 Aligned_cols=44 Identities=32% Similarity=0.524 Sum_probs=40.2
Q ss_pred EEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeHHHHHHHHHCCC
Q 007275 519 IGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGF 566 (609)
Q Consensus 519 iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~~a~~fYek~GF 566 (609)
++|+|+|||+|+|++|++.++++++..|+. ....+..+|+++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~----~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS----LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce----ehHHHHHHHHhcCC
Confidence 999999999999999999999999998876 33578899999999
No 158
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=96.84 E-value=0.011 Score=62.66 Aligned_cols=145 Identities=17% Similarity=0.231 Sum_probs=73.7
Q ss_pred ccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhc------------------CeEEEEEE--CCEEEEEEEEEE--
Q 007275 450 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL------------------DSFYVVER--EGQIIACAALFP-- 507 (609)
Q Consensus 450 ~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i------------------~~~~V~~~--dg~IVG~~~l~~-- 507 (609)
.|||++.+|+++|.+|-...-..-...|.+.+.+.+.+ ..++|.|+ .|+|+|++++..
T Consensus 3 viRp~~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I~a~v 82 (342)
T PF04958_consen 3 VIRPARPSDLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAIEAAV 82 (342)
T ss_dssp EEEE--GGGHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEEESST
T ss_pred EEecCchhhHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeEEecc
Confidence 58999999999999995543221122344444333322 13567775 599999999842
Q ss_pred ---------------------------------ecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHH---HCCCCEEE
Q 007275 508 ---------------------------------FFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA---SLGLDMLF 551 (609)
Q Consensus 508 ---------------------------------~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~---~~G~~~I~ 551 (609)
.+-.++.+|+.++++|+||+-|.|+.|-+.-.=+.. ++--+++.
T Consensus 83 G~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~~~vi 162 (342)
T PF04958_consen 83 GLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFADRVI 162 (342)
T ss_dssp TSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS-SEEE
T ss_pred CCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcchhee
Confidence 011356789999999999999999988775544443 34556776
Q ss_pred EEe------HHHHHHHHHCCCeEeeeecchhHhhhhcccCCCceeEEeecCCC
Q 007275 552 LLT------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPD 598 (609)
Q Consensus 552 l~t------~~a~~fYek~GF~~~~~~~lp~~~~~~y~~~~~s~i~mkkll~~ 598 (609)
..- ...-+||+..|=+..+.+. ...+. -..-.++-|+..|.|.
T Consensus 163 AElrG~~De~G~SPFWdalG~~FF~mdF-~eAD~---Lsg~~~k~FIaeLMP~ 211 (342)
T PF04958_consen 163 AELRGVSDEDGRSPFWDALGRHFFDMDF-QEADY---LSGIGNKQFIAELMPR 211 (342)
T ss_dssp EE--B---TT---HHHHHTGGGTS---H-HHHHH---HHHH------------
T ss_pred eeccCCcCCCCCCchHHHhhccccCCCH-HHHHH---HHcCCcchHHHHhCCC
Confidence 654 2457899998876655542 21111 1122466777777664
No 159
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=96.80 E-value=0.0098 Score=60.56 Aligned_cols=120 Identities=16% Similarity=0.117 Sum_probs=79.9
Q ss_pred ccccCCc-CCHHHHHHHHhhhHhh--ccCcc------CCHHHHHhhcCeEEEEEE-CCEEEEEEEEEEec----------
Q 007275 450 GTRTAKV-TDLSGIKQIIQPLVES--GALVR------RTDEELLKALDSFYVVER-EGQIIACAALFPFF---------- 509 (609)
Q Consensus 450 ~IR~a~~-~D~~~I~~L~~~~~~~--~~~~~------~~~e~l~~~i~~~~V~~~-dg~IVG~~~l~~~~---------- 509 (609)
.++.+.. +++.++.++..+.... ++..+ ...+++......+++.+. ++++|||+.+.+..
T Consensus 9 ~v~~a~~~~~~~~~~~lR~~VFv~e~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~ 88 (241)
T TIGR03694 9 EIIPAVTPELLEEAFRLRYQVYCEELGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPF 88 (241)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccH
Confidence 3444433 3466777777664332 33311 122333332233444443 58999999997520
Q ss_pred -------------------CCCeEEEEEEEEcccCcCC--------c--------------------HHHHHHHHHHHHH
Q 007275 510 -------------------KEKCGEVAAIGVSPECRGQ--------G--------------------QGDKLLDYIEKKA 542 (609)
Q Consensus 510 -------------------~~~~~eI~~iaV~p~~Rgq--------G--------------------iG~~LL~~l~~~A 542 (609)
....+|+.+++|+|+||++ | +...|+..+.++|
T Consensus 89 e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a 168 (241)
T TIGR03694 89 EKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALS 168 (241)
T ss_pred HHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHH
Confidence 1246899999999999974 2 4577999999999
Q ss_pred HHCCCCEEEEEeH-HHHHHHHHCCCeEe
Q 007275 543 ASLGLDMLFLLTT-RTADWFKSRGFREC 569 (609)
Q Consensus 543 ~~~G~~~I~l~t~-~a~~fYek~GF~~~ 569 (609)
.++|++.++..++ ...+++.+.||...
T Consensus 169 ~~~Gi~~~~~v~~~~l~r~l~r~G~~~~ 196 (241)
T TIGR03694 169 SANGITHWYAIMEPRLARLLSRFGIQFR 196 (241)
T ss_pred HHCCCcEEEEEeCHHHHHHHHHhCCceE
Confidence 9999999988885 56789999998764
No 160
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.47 E-value=0.0089 Score=50.99 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=59.5
Q ss_pred EECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEe
Q 007275 494 EREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFREC 569 (609)
Q Consensus 494 ~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~ 569 (609)
..+|++|..+... ..+++..-++.|+|||||+.+.++....+++.+.|+.. +..+ ..++++..++||...
T Consensus 5 gpeG~PVSW~lmd-----qtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~-Y~hv~~~N~~~~r~~~~lg~~~~ 78 (89)
T PF08444_consen 5 GPEGNPVSWSLMD-----QTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPF-YGHVDEDNEASQRLSKSLGFIFM 78 (89)
T ss_pred CCCCCEeEEEEec-----ccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCe-EeehHhccHHHHHHHHHCCCeec
Confidence 3467888776654 56899999999999999999999999999999999864 5555 368999999999975
Q ss_pred e
Q 007275 570 S 570 (609)
Q Consensus 570 ~ 570 (609)
.
T Consensus 79 p 79 (89)
T PF08444_consen 79 P 79 (89)
T ss_pred C
Confidence 4
No 161
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=96.41 E-value=0.037 Score=55.03 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=75.2
Q ss_pred CHHHHHHHHhhhHhh--ccCcc----CCHHHHHhhcCeEEEEE-ECCEEEEEEEEEEec--------------------C
Q 007275 458 DLSGIKQIIQPLVES--GALVR----RTDEELLKALDSFYVVE-REGQIIACAALFPFF--------------------K 510 (609)
Q Consensus 458 D~~~I~~L~~~~~~~--~~~~~----~~~e~l~~~i~~~~V~~-~dg~IVG~~~l~~~~--------------------~ 510 (609)
+++++.++..+.+.. ++..+ ...++|...-..+++.. .+|+++||+.+.|.. .
T Consensus 17 ~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~ 96 (207)
T PRK13834 17 LLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAH 96 (207)
T ss_pred HHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCC
Confidence 345555555553332 22221 12233433334455544 568999999996521 1
Q ss_pred CCeEEEEEEEEcccCcCC---c----HHHHHHHHHHHHHHHCCCCEEEEEeH-HHHHHHHHCCCeEe
Q 007275 511 EKCGEVAAIGVSPECRGQ---G----QGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFREC 569 (609)
Q Consensus 511 ~~~~eI~~iaV~p~~Rgq---G----iG~~LL~~l~~~A~~~G~~~I~l~t~-~a~~fYek~GF~~~ 569 (609)
...+|+.+++|+|+++.. + +...|+..+.+++...|++.++..++ ...+.|.++||...
T Consensus 97 ~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r~G~~~~ 163 (207)
T PRK13834 97 PAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILARAGWPMQ 163 (207)
T ss_pred CCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHcCCCeE
Confidence 357899999999986422 2 56789999999999999999988775 56789999999864
No 162
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=96.19 E-value=0.069 Score=48.29 Aligned_cols=64 Identities=23% Similarity=0.126 Sum_probs=54.1
Q ss_pred eEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe
Q 007275 489 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 554 (609)
Q Consensus 489 ~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t 554 (609)
.++++..+|++||+..... .++..+.....++|+|+..+.|..|+..++++|.+.|++.+-+..
T Consensus 72 ~l~~~~~~g~~va~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 72 RLFVLYDGGEPVAFALGFR--HGGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred EEEEEEECCEEEEEEEEEE--ECCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 4677788999999987763 345777778888999999999999999999999999998887654
No 163
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=96.07 E-value=0.027 Score=59.40 Aligned_cols=145 Identities=12% Similarity=0.162 Sum_probs=88.2
Q ss_pred cccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhc-----------------CeEEEEEE--CCEEEEEEEEEEe---
Q 007275 451 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-----------------DSFYVVER--EGQIIACAALFPF--- 508 (609)
Q Consensus 451 IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i-----------------~~~~V~~~--dg~IVG~~~l~~~--- 508 (609)
|||++..|+++|.++-...-..-...|.+++.+.+.+ ..++|.|+ .|+|+|++++...
T Consensus 2 iRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~ 81 (336)
T TIGR03245 2 VRPSRFADLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVASAGY 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEecccC
Confidence 7999999999999984332111122333433333222 23567774 5899999998420
Q ss_pred --------------------------------cCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHH---HHCCCCEEEEE
Q 007275 509 --------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA---ASLGLDMLFLL 553 (609)
Q Consensus 509 --------------------------------~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A---~~~G~~~I~l~ 553 (609)
+-.++-+|+.++++|+||+-|.|+.|-+.=.-+. +++--+++...
T Consensus 82 ~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~RfLFiA~~~erF~~~viAE 161 (336)
T TIGR03245 82 GEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRARLLFMAAHRERFQSRIIVE 161 (336)
T ss_pred CCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHHHHHHHHhhHhhhhhhheee
Confidence 0124568999999999999999988766443333 33444555554
Q ss_pred e------HHHHHHHHHCCCeEeeeecchhHhhhhcccCCCceeEEeecCCCC
Q 007275 554 T------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPDT 599 (609)
Q Consensus 554 t------~~a~~fYek~GF~~~~~~~lp~~~~~~y~~~~~s~i~mkkll~~~ 599 (609)
- ...-+||+..|=.-.+.+. ...+ |-..-.++.|+..|.|.+
T Consensus 162 mrG~~De~G~SPFWd~lg~hFF~mdF-~eAD---~Lsg~~~k~FIaeLMP~~ 209 (336)
T TIGR03245 162 IQGVQDDNGDSPFWDAIGRHFFDLDF-ATAE---YYSGIKSKTFIAELMPPY 209 (336)
T ss_pred ccCccCCCCCCccHHHhhccccCCCH-HHHH---HHhcCCCceeHHHHCCCC
Confidence 4 2345788888877665542 2211 222235677777777654
No 164
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=95.98 E-value=0.032 Score=58.82 Aligned_cols=145 Identities=15% Similarity=0.168 Sum_probs=88.3
Q ss_pred cccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhc----------------CeEEEEEE--CCEEEEEEEEEEe----
Q 007275 451 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFPF---- 508 (609)
Q Consensus 451 IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i----------------~~~~V~~~--dg~IVG~~~l~~~---- 508 (609)
|||++.+|+++|.+|-...-..-...|.+++.+.+.+ ..++|.|+ .|+|+|++++...
T Consensus 2 vRpv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~~ 81 (335)
T TIGR03243 2 VRPVRTSDLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAVGLD 81 (335)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 7999999999999984432111012333333332222 23567774 5899999998420
Q ss_pred -------------------------------cCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHH---HHCCCCEEEEEe
Q 007275 509 -------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA---ASLGLDMLFLLT 554 (609)
Q Consensus 509 -------------------------------~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A---~~~G~~~I~l~t 554 (609)
+-.++-+|+.++++|+||+-|.|+.|-+.=.-+. +++--+++...-
T Consensus 82 ~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~viAEm 161 (335)
T TIGR03243 82 EPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRSRFLFIAAFRERFGDKIIAEM 161 (335)
T ss_pred CCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHHHHHHHHhhHhhhhhhheeec
Confidence 0024568999999999999999988866543333 334445555543
Q ss_pred ------HHHHHHHHHCCCeEeeeecchhHhhhhcccCCCceeEEeecCCCC
Q 007275 555 ------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPDT 599 (609)
Q Consensus 555 ------~~a~~fYek~GF~~~~~~~lp~~~~~~y~~~~~s~i~mkkll~~~ 599 (609)
...-+||+..|-.-.+.+. ...+ |-..-.++.|+..|.|.+
T Consensus 162 rG~~De~G~SPFWd~lg~hFF~mdF-~~AD---~Lsg~~~k~FIaeLMP~~ 208 (335)
T TIGR03243 162 RGVSDEQGRSPFWEALGRHFFSMDF-AQAD---YLSGIGSKTFIAELMPKY 208 (335)
T ss_pred cCccCCCCCCccHHHhhccccCCCH-HHHH---HHhcCCCceeHHHHCCCC
Confidence 2345799888877665552 2211 222335677777777654
No 165
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=95.89 E-value=0.029 Score=59.14 Aligned_cols=107 Identities=15% Similarity=0.201 Sum_probs=67.6
Q ss_pred CHHHHHHHHhhhHhhccCccCCHHHHHhhcCeEEEEEECCEEEEEEEEEEe--cCCCeEEEEEEEEcccCcC-CcHHHHH
Q 007275 458 DLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPF--FKEKCGEVAAIGVSPECRG-QGQGDKL 534 (609)
Q Consensus 458 D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i~~~~V~~~dg~IVG~~~l~~~--~~~~~~eI~~iaV~p~~Rg-qGiG~~L 534 (609)
|++.+..++++..............+...+...+|. |..-|.+.+.+. .+++..|++.++|.++.|| -||++.+
T Consensus 346 dl~r~q~LI~~SFkRTLd~h~y~~r~~~~La~~iVs---gdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~v 422 (495)
T COG5630 346 DLPRLQHLIQSSFKRTLDPHYYETRINTPLARAIVS---GDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISDAV 422 (495)
T ss_pred CcHHHHHHHHHHHhhccCHHHHHHhccCcceeEEee---ccceeeEEEEeeccCCCCCcceeeeeccccccccchHHHHH
Confidence 577889998877665543322222222333444554 456777777754 3457789999999999999 8999999
Q ss_pred HHHHHHHHHHCCCCEEEEEeHHHHHHH--HHCCCeE
Q 007275 535 LDYIEKKAASLGLDMLFLLTTRTADWF--KSRGFRE 568 (609)
Q Consensus 535 L~~l~~~A~~~G~~~I~l~t~~a~~fY--ek~GF~~ 568 (609)
+.-+.+..-++=+.+.. .++++.+|| +.-|+-.
T Consensus 423 fniM~e~fP~eL~WRSR-~~N~vNkwYf~rSvg~lk 457 (495)
T COG5630 423 FNIMREEFPNELFWRSR-HNNQVNKWYFARSVGYLK 457 (495)
T ss_pred HHHHHHhCcHhhhhhhc-ccCcchheeeehhhehhh
Confidence 99888776432121211 124677777 3335443
No 166
>PRK10456 arginine succinyltransferase; Provisional
Probab=95.74 E-value=0.036 Score=58.69 Aligned_cols=146 Identities=16% Similarity=0.167 Sum_probs=88.3
Q ss_pred cccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhc----------------CeEEEEEE--CCEEEEEEEEEEe--
Q 007275 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFPF-- 508 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i----------------~~~~V~~~--dg~IVG~~~l~~~-- 508 (609)
..|||++.+|+++|.+|-...-..-...|.+++.+.+.+ ..++|.++ .|+|+|++++...
T Consensus 2 ~vvRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG 81 (344)
T PRK10456 2 MVIRPVERSDLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVG 81 (344)
T ss_pred eEEecCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEeccc
Confidence 359999999999999994332111122444444444333 23567774 5899999998420
Q ss_pred ---------------------------------cCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHH---HHCCCCEEEE
Q 007275 509 ---------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA---ASLGLDMLFL 552 (609)
Q Consensus 509 ---------------------------------~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A---~~~G~~~I~l 552 (609)
+-.+.-+|+.++++|+||+-|.|+.|-+.=.-+. +++--+++..
T Consensus 82 ~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~viA 161 (344)
T PRK10456 82 LNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVVA 161 (344)
T ss_pred CCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHHHHHHHHhhHhhhhhhhhe
Confidence 0024568999999999999999988766433333 2333445544
Q ss_pred Ee------HHHHHHHHHCCCeEeeeecchhHhhhhcccCCCceeEEeecCCC
Q 007275 553 LT------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPD 598 (609)
Q Consensus 553 ~t------~~a~~fYek~GF~~~~~~~lp~~~~~~y~~~~~s~i~mkkll~~ 598 (609)
.- ...-+||+..|=.-.+.+. ...+ |-..-.++.|+..|.|.
T Consensus 162 EmRG~~De~G~SPFWd~lg~hFF~mdF-~eAD---~Lsg~~~k~FIaeLMP~ 209 (344)
T PRK10456 162 EMRGVIDEHGYSPFWQSLGKRFFSMDF-SRAD---YLCGTGQKAFIAELMPK 209 (344)
T ss_pred eccCccCCCCCCccHHHhhccccCCCH-HHHH---HHhcCCCceeHHHHCCC
Confidence 33 2345788887766655442 2111 11223466777766664
No 167
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=95.72 E-value=0.12 Score=47.88 Aligned_cols=122 Identities=20% Similarity=0.147 Sum_probs=76.7
Q ss_pred cccCCcCCHHHHHHHHhhhHhhc--cCccCCHH-HH--Hh-hc-----CeEEEEEE---------CCEEEEEEEEEEecC
Q 007275 451 TRTAKVTDLSGIKQIIQPLVESG--ALVRRTDE-EL--LK-AL-----DSFYVVER---------EGQIIACAALFPFFK 510 (609)
Q Consensus 451 IR~a~~~D~~~I~~L~~~~~~~~--~~~~~~~e-~l--~~-~i-----~~~~V~~~---------dg~IVG~~~l~~~~~ 510 (609)
+-|.++.+.+....|....+-.. ...+.+.+ .+ +. |- -.|+|.+. -+..||-+-++-..+
T Consensus 16 LVPYe~~HV~kYHeWMknEelr~LT~SE~LtLdeEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~MvGDvNlFlt~~ 95 (185)
T KOG4135|consen 16 LVPYEPCHVPKYHEWMKNEELRRLTASEPLTLDEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDHMVGDVNLFLTTS 95 (185)
T ss_pred EeeccccchhHHHhHhhhHHHHHhhcCCCcchhHHHHhhhhhccCCcceEEEEEechhcccCchhHhhhccceeeEEecC
Confidence 56667777777777765432221 12233321 11 11 11 13555521 123577776653222
Q ss_pred C---------CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEe----HHHHHHHHHCCCeEeeee
Q 007275 511 E---------KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 572 (609)
Q Consensus 511 ~---------~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~-~G~~~I~l~t----~~a~~fYek~GF~~~~~~ 572 (609)
. ..+++.-+.-.|..||+|+|++.+..++.|+.. .++.+-.+.. .++.+||.|++|..+...
T Consensus 96 ~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~n 171 (185)
T KOG4135|consen 96 PDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVFYN 171 (185)
T ss_pred CCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeeeee
Confidence 1 246776666689999999999999999999975 5676666655 389999999999987543
No 168
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=95.69 E-value=0.045 Score=57.85 Aligned_cols=144 Identities=15% Similarity=0.177 Sum_probs=84.7
Q ss_pred cccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhc----------------CeEEEEEE--CCEEEEEEEEEEe----
Q 007275 451 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFPF---- 508 (609)
Q Consensus 451 IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i----------------~~~~V~~~--dg~IVG~~~l~~~---- 508 (609)
|||++.+|+++|.+|-...-..-...|.+++.+.+.+ ..++|.|+ .|+|+|++++...
T Consensus 2 vRPv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~~ 81 (336)
T TIGR03244 2 VRPVETSDLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAAVGLE 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 7999999999999984432111122444444444333 23567765 5899999998420
Q ss_pred -------------------------------cCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHH---HHCCCCEEEEEe
Q 007275 509 -------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA---ASLGLDMLFLLT 554 (609)
Q Consensus 509 -------------------------------~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A---~~~G~~~I~l~t 554 (609)
+-.++-+|+.++++|+||+-|.|+.|-+.=.-+. +++--+++...-
T Consensus 82 ~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~viAEm 161 (336)
T TIGR03244 82 EPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKSRFLFIAQFRERFSKKIIAEM 161 (336)
T ss_pred CCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHHHHHHHHhhHhhhhhhhhhhh
Confidence 0024568999999999999999988766433332 233333444432
Q ss_pred ------HHHHHHHHHCCCeEeeeecchhHhhhhcccCCCceeEEeecCCC
Q 007275 555 ------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPD 598 (609)
Q Consensus 555 ------~~a~~fYek~GF~~~~~~~lp~~~~~~y~~~~~s~i~mkkll~~ 598 (609)
...-+||+..|=.-.+.+. ...+ |-..-.++.|+..|.|.
T Consensus 162 rG~~De~G~SPFWd~lg~hFF~mdF-~eAD---~Lsg~~~k~FIaeLMP~ 207 (336)
T TIGR03244 162 RGVSDEQGRSPFWNALGRHFFSMDF-SQAD---YLSGIGQKAFIAELMPK 207 (336)
T ss_pred cCccCCCCCCchHHHhhccccCCCH-HHHH---HHhccCcchhHHHHCCC
Confidence 1335688887766555442 2111 11123455666666554
No 169
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.65 E-value=0.14 Score=50.30 Aligned_cols=115 Identities=14% Similarity=0.187 Sum_probs=79.8
Q ss_pred cCCHHHHHHHHhhhHhh--ccCc----cCCHHHHHhhcCeEEEE-EECCEEEEEEEEEEecC------------------
Q 007275 456 VTDLSGIKQIIQPLVES--GALV----RRTDEELLKALDSFYVV-EREGQIIACAALFPFFK------------------ 510 (609)
Q Consensus 456 ~~D~~~I~~L~~~~~~~--~~~~----~~~~e~l~~~i~~~~V~-~~dg~IVG~~~l~~~~~------------------ 510 (609)
++-++++.++..+.+.+ ++.. .+..++|.+.-..|.++ ..+++|+||+.+.|...
T Consensus 14 ~~~l~em~rlR~~vF~erL~W~v~~~~g~E~DqyD~~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P 93 (209)
T COG3916 14 PKALEEMHRLRYQVFKERLGWDVVCIDGFEIDQYDNLDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPP 93 (209)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeccCCccccccCCCCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCC
Confidence 33455666666664433 2221 23344454444556666 67899999999976211
Q ss_pred --CCeEEEEEEEEcc--cCcCC---c-HHHHHHHHHHHHHHHCCCCEEEEEeH-HHHHHHHHCCCeEee
Q 007275 511 --EKCGEVAAIGVSP--ECRGQ---G-QGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECS 570 (609)
Q Consensus 511 --~~~~eI~~iaV~p--~~Rgq---G-iG~~LL~~l~~~A~~~G~~~I~l~t~-~a~~fYek~GF~~~~ 570 (609)
.+.+|..+++|++ .-+.. . ++..|+--+.+++.+.|++.|...|+ ...+.+.+.||....
T Consensus 94 ~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~~~meril~r~Gw~~~r 162 (209)
T COG3916 94 SSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVTDTGMERILRRAGWPLTR 162 (209)
T ss_pred CCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEEchHHHHHHHHcCCCeEE
Confidence 2678999999986 32222 2 47889999999999999999988884 678999999998764
No 170
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.26 E-value=0.035 Score=60.57 Aligned_cols=125 Identities=16% Similarity=0.200 Sum_probs=94.9
Q ss_pred ccccccccCCcCCHHHHHHHHhhhHhhccC-ccCCHHHHHhhc--CeEEEE--E-----ECCEEEEEEEEEEecCCCeEE
Q 007275 446 DLYEGTRTAKVTDLSGIKQIIQPLVESGAL-VRRTDEELLKAL--DSFYVV--E-----REGQIIACAALFPFFKEKCGE 515 (609)
Q Consensus 446 d~~~~IR~a~~~D~~~I~~L~~~~~~~~~~-~~~~~e~l~~~i--~~~~V~--~-----~dg~IVG~~~l~~~~~~~~~e 515 (609)
.|..++++..+.+++.|.+|.+...+.... .+..++++.+.. ..+.+. . -|.-+||.+.+. -++..+.
T Consensus 411 em~l~vs~~de~~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~--kk~~~w~ 488 (574)
T COG3882 411 EMRLTVSKFDEVNIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVE--KKESEWF 488 (574)
T ss_pred eEEEEEeeccccCcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEE--ecCCeEE
Confidence 466678999999999999998776555443 334566666633 333332 1 145689988886 3457888
Q ss_pred EEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeH------HHHHHHHHCCCeEeeee
Q 007275 516 VAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT------RTADWFKSRGFRECSIE 572 (609)
Q Consensus 516 I~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~------~a~~fYek~GF~~~~~~ 572 (609)
|+.+..+...-|+++=.+||..+++.|...|+..++..-. +...||+++||+..+..
T Consensus 489 IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~en 551 (574)
T COG3882 489 IDTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLKGEN 551 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhcccccccc
Confidence 9888888888899999999999999999999999888652 56899999999966544
No 171
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=95.06 E-value=0.098 Score=46.78 Aligned_cols=78 Identities=15% Similarity=0.117 Sum_probs=57.4
Q ss_pred CeEEEEEECCEEEEEEEEEEec---CCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe--HHHHHHHH
Q 007275 488 DSFYVVEREGQIIACAALFPFF---KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT--TRTADWFK 562 (609)
Q Consensus 488 ~~~~V~~~dg~IVG~~~l~~~~---~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t--~~a~~fYe 562 (609)
..-|....+|.+|||+.+.... .....-++.++|-..|||+|.|++..+.+...+ +|...+.... ++|+.||.
T Consensus 37 ~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~--~g~w~Va~i~EN~PA~~fwK 114 (143)
T COG5628 37 REAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSA--WGVWQVATVRENTPARAFWK 114 (143)
T ss_pred cceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHh--hceEEEEEeccCChhHHHHH
Confidence 4567778899999999886422 123456888999999999999999999887654 4444433322 58999999
Q ss_pred HCCCe
Q 007275 563 SRGFR 567 (609)
Q Consensus 563 k~GF~ 567 (609)
+.-+.
T Consensus 115 ~~~~t 119 (143)
T COG5628 115 RVAET 119 (143)
T ss_pred hhhcc
Confidence 86554
No 172
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=95.02 E-value=0.17 Score=49.07 Aligned_cols=80 Identities=19% Similarity=0.261 Sum_probs=53.4
Q ss_pred EEEEE-CCEEEEEEEEEEec------CCCeEEEEEEEEcccCcCCcHHHHHHHHHH-HHHHHCCCCEEEEEeHHHHHHHH
Q 007275 491 YVVER-EGQIIACAALFPFF------KEKCGEVAAIGVSPECRGQGQGDKLLDYIE-KKAASLGLDMLFLLTTRTADWFK 562 (609)
Q Consensus 491 ~V~~~-dg~IVG~~~l~~~~------~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~-~~A~~~G~~~I~l~t~~a~~fYe 562 (609)
+++.+ ..++|+.+.+..+. +.....++...++|+|||+|+++ |+..+. +..+..+-..+...+..+.+||.
T Consensus 49 ~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~~~~N~~~~~~~~~~~~w~ 127 (181)
T PF06852_consen 49 LTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDSVDDNSVAQGNVKMSNFWH 127 (181)
T ss_pred EEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhccCCCceeeecCHHHHHHHH
Confidence 34444 46799988876432 23578899999999999999996 555554 44444333334333457778887
Q ss_pred H-CCCeEeee
Q 007275 563 S-RGFRECSI 571 (609)
Q Consensus 563 k-~GF~~~~~ 571 (609)
+ +||...+.
T Consensus 128 k~~G~~~~~h 137 (181)
T PF06852_consen 128 KMFGFDDYGH 137 (181)
T ss_pred HHhCCCCCcc
Confidence 6 79887765
No 173
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=93.98 E-value=0.067 Score=58.20 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=44.9
Q ss_pred cccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeH-HHHHHHHHCCCeEeeee
Q 007275 522 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECSIE 572 (609)
Q Consensus 522 ~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~-~a~~fYek~GF~~~~~~ 572 (609)
...||.+|+|+.||+.+++.|++.+..+|.+.+. .++.+|.|+||...+.-
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k~GY~~~gpY 510 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRKLGYELDGPY 510 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHHhCccccCCc
Confidence 4689999999999999999999998988887764 78999999999987653
No 174
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.09 E-value=0.3 Score=55.65 Aligned_cols=84 Identities=18% Similarity=0.278 Sum_probs=59.8
Q ss_pred EEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCC-------------CEE------------------------------
Q 007275 514 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGL-------------DML------------------------------ 550 (609)
Q Consensus 514 ~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~-------------~~I------------------------------ 550 (609)
+.|-+|+|+|+|+++|+|++-++.+.+|...+.. +++
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG~~~~i~e~~~~~~~~~k~v~e~~~vsllee~i~pR~~lppLL~~L~er~ 694 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYFEGKFTSISEDVLAVDHSIKRVEEAEKVSLLEEQIKPRKDLPPLLLKLSERP 694 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHHhccCCCccccccccCccccccchhhhhhhhhhhcccccCCCceeeEcccCC
Confidence 5788999999999999999999999998754321 111
Q ss_pred -----EEEe-----HHHHHHHHHCCCeEeeeecchhHhhhhcccCCCceeEEeecCCCCCCC
Q 007275 551 -----FLLT-----TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPDTSGI 602 (609)
Q Consensus 551 -----~l~t-----~~a~~fYek~GF~~~~~~~lp~~~~~~y~~~~~s~i~mkkll~~~~g~ 602 (609)
|+.+ ....+||.++||.++.....+.. ....++.+|++.|-++.+|.
T Consensus 695 perldylGvSfGLT~~L~kFWk~~gF~PvylrQt~n~-----lTGEHtcimLk~L~~~e~~w 751 (1011)
T KOG2036|consen 695 PERLDYLGVSFGLTPSLLKFWKKNGFVPVYLRQTSND-----LTGEHTCIMLKTLEGDESGW 751 (1011)
T ss_pred CcccceeeecccCCHHHHHHHHhcCceeEEeeccccc-----cccceeEEEEecCCCcccch
Confidence 0111 24589999999999876544421 13457889998888766654
No 175
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=93.02 E-value=0.49 Score=44.83 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=60.0
Q ss_pred CCHHHHHHHHhhhHhhc----cCccCCHHHHHhhcC------e-EEEEE--ECCEEEEEEEEEEec----C--CCeEEEE
Q 007275 457 TDLSGIKQIIQPLVESG----ALVRRTDEELLKALD------S-FYVVE--REGQIIACAALFPFF----K--EKCGEVA 517 (609)
Q Consensus 457 ~D~~~I~~L~~~~~~~~----~~~~~~~e~l~~~i~------~-~~V~~--~dg~IVG~~~l~~~~----~--~~~~eI~ 517 (609)
+++.++..|++..+-+. |....+.+-+...+. . ...+. .++++|||+.-.|.. + -...+|.
T Consensus 35 ~~l~ely~lL~~nYVEDdd~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eIN 114 (162)
T PF01233_consen 35 EELKELYELLNENYVEDDDNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEIN 114 (162)
T ss_dssp HHHHHHHHHHHHHSSBTTTSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCccCCcceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEE
Confidence 34455666655533222 234455665555542 1 22232 369999999877621 1 2568999
Q ss_pred EEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEE
Q 007275 518 AIGVSPECRGQGQGDKLLDYIEKKAASLGLDML 550 (609)
Q Consensus 518 ~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I 550 (609)
-++||++.|.++++--|++.+.+++...|+-+-
T Consensus 115 FLCVhKklRskrlAPvLIkEItRRvn~~gI~qA 147 (162)
T PF01233_consen 115 FLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQA 147 (162)
T ss_dssp EEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EE
T ss_pred EEeecHhHhhcCCcHHHHHHHHHHhhhcCceee
Confidence 999999999999999999999999999887653
No 176
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=92.79 E-value=0.32 Score=47.36 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=37.9
Q ss_pred EEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCC
Q 007275 498 QIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 546 (609)
Q Consensus 498 ~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G 546 (609)
.++||..-.. .......|+||.|.|.||++|+|+.|++..=+.++..+
T Consensus 66 h~vGyFSKEk-~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 66 HIVGYFSKEK-ESWDNNNLSCILTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EEEEEEEEES-S-TT-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEEEEe-cccCCeeEeehhhcchhhhcchhhhhhhhHHHHhhccC
Confidence 4888887652 23345789999999999999999999999999888775
No 177
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=92.17 E-value=0.48 Score=41.49 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=49.0
Q ss_pred EEEEEECCEEEEEEEEEEec-CCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe---HHHHHHH
Q 007275 490 FYVVEREGQIIACAALFPFF-KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWF 561 (609)
Q Consensus 490 ~~V~~~dg~IVG~~~l~~~~-~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t---~~a~~fY 561 (609)
.+-+..++...||+.+.+.. +....+|+.++|.|..|++|+++.|+..+.+.. +.++..+ .+...||
T Consensus 10 ~~~~y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~-----~~L~Wrsr~~n~~n~Wy 80 (99)
T cd04264 10 LHAIYLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF-----PKLFWRSRKTNPINPWY 80 (99)
T ss_pred ceEEEEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC-----CceEEEeCCCCcccceE
Confidence 34445566788888887422 247899999999999999999999999888763 4555554 2445665
No 178
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=92.12 E-value=0.18 Score=52.72 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=42.4
Q ss_pred cCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEeH-HHHHHHHHCCCeEeeee
Q 007275 524 ECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLTT-RTADWFKSRGFRECSIE 572 (609)
Q Consensus 524 ~~RgqGiG~~LL~~l~~~A~~-~G~~~I~l~t~-~a~~fYek~GF~~~~~~ 572 (609)
.||.||+|..||+.+++.|++ +|..+|-+... .++.+|.|+||+..++.
T Consensus 498 KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~klGY~LdGPY 548 (554)
T KOG2535|consen 498 KFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKLGYELDGPY 548 (554)
T ss_pred hhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHhhCeeecChh
Confidence 699999999999999999975 78888877763 68899999999987654
No 179
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=91.41 E-value=0.48 Score=48.56 Aligned_cols=86 Identities=17% Similarity=0.259 Sum_probs=54.1
Q ss_pred ccccCCcCCHHHHHHHHhhhHhhccCccCCHHHHHhhc----------------CeEEEEEE--CCEEEEEEEEEE----
Q 007275 450 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFP---- 507 (609)
Q Consensus 450 ~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i----------------~~~~V~~~--dg~IVG~~~l~~---- 507 (609)
.+||++..|++++.++-...-..-...|-+.+.+...+ ..++|.++ .|+++|+.++..
T Consensus 3 vvRP~~~aDl~al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a~vGl 82 (336)
T COG3138 3 VVRPVERADLEALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEAAVGL 82 (336)
T ss_pred ccccccccCHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEEeecc
Confidence 48999999999999984332111111333333333222 24566665 699999998742
Q ss_pred ---e----------------------------cCCCeEEEEEEEEcccCcCCcHHHHHH
Q 007275 508 ---F----------------------------FKEKCGEVAAIGVSPECRGQGQGDKLL 535 (609)
Q Consensus 508 ---~----------------------------~~~~~~eI~~iaV~p~~RgqGiG~~LL 535 (609)
+ +-.++.+|+.++++|+||.-+.|+.|-
T Consensus 83 ~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Lls 141 (336)
T COG3138 83 NDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLLS 141 (336)
T ss_pred CCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhhh
Confidence 0 001345788999999999777776543
No 180
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=91.08 E-value=1.3 Score=43.20 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=78.0
Q ss_pred ccccCCcCCHHHHHHHHhhhHhh-ccCccCCHHHHHhhcC------eEEEEEEC-CEEEEEEEEEEecC-----C--C--
Q 007275 450 GTRTAKVTDLSGIKQIIQPLVES-GALVRRTDEELLKALD------SFYVVERE-GQIIACAALFPFFK-----E--K-- 512 (609)
Q Consensus 450 ~IR~a~~~D~~~I~~L~~~~~~~-~~~~~~~~e~l~~~i~------~~~V~~~d-g~IVG~~~l~~~~~-----~--~-- 512 (609)
.+|+++++|++++..+++..... ......+.+++..|+. ..||++++ ++|-.|+.++-.+. . .
T Consensus 30 glR~m~~~Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~~l 109 (190)
T PF02799_consen 30 GLRPMEEKDVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHKTL 109 (190)
T ss_dssp TEEE--GGGHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSSEE
T ss_pred ccccCchhhHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCCCccce
Confidence 48999999999999999885543 3345678999999982 35777765 58989888874321 1 1
Q ss_pred -eEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe-HHHHHHHHHCCCeEeee
Q 007275 513 -CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 571 (609)
Q Consensus 513 -~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t-~~a~~fYek~GF~~~~~ 571 (609)
.+++ -..+... =--++||..++-.|++.|+...-+.. -....|.+.+.|..-+-
T Consensus 110 ~aAY~-fY~~~~~----~~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~~fL~~lKFg~GdG 165 (190)
T PF02799_consen 110 KAAYS-FYYVATS----TRLKELMNDALILAKNEGFDVFNALDLMDNSSFLEDLKFGPGDG 165 (190)
T ss_dssp EEEEE-EEEEESS----SHHHHHHHHHHHHHHHTTESEEEEESTTTGGGTTTTTT-EEEEE
T ss_pred eeeee-eeeeecC----CCHHHHHHHHHHHHHHcCCCEEehhhhccchhhHhhCCccCCCC
Confidence 2333 2233222 24677999999999999998876655 24557899999987543
No 181
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=90.63 E-value=0.74 Score=40.32 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=46.7
Q ss_pred EEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe---HHHHHHH
Q 007275 491 YVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWF 561 (609)
Q Consensus 491 ~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t---~~a~~fY 561 (609)
+-+..++..=||+.+.+.......+|+.++|.|..||+|+++.|++.+.+.. +.++..+ .+...||
T Consensus 12 ~~~y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~-----~~L~Wrsr~~n~~n~Wy 80 (99)
T cd04265 12 HTIYLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF-----PKLFWRSRSTNPINPWY 80 (99)
T ss_pred eEEEEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC-----CceEEEeCCCCcccceE
Confidence 3344455566677666322247899999999999999999999999888763 3455554 2455665
No 182
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=90.46 E-value=0.58 Score=48.30 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=39.2
Q ss_pred CEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCC
Q 007275 497 GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 546 (609)
Q Consensus 497 g~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G 546 (609)
..+|||..--.. ......|+||.|.|.||++|+|+.|++..=+..+..|
T Consensus 140 ~h~vGYFSKEK~-s~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 140 SHIVGYFSKEKV-SAEDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred cEEEEEeceecc-ccCCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 458998766522 2234679999999999999999999999998887765
No 183
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=89.81 E-value=0.33 Score=39.62 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=25.7
Q ss_pred EEEEEEEEcccCcCCcHHHHHHHHHHHHH
Q 007275 514 GEVAAIGVSPECRGQGQGDKLLDYIEKKA 542 (609)
Q Consensus 514 ~eI~~iaV~p~~RgqGiG~~LL~~l~~~A 542 (609)
.-|.+|-|+|.+|++||+++||+.+.+..
T Consensus 6 ~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 6 CGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 45789999999999999999999988764
No 184
>PTZ00064 histone acetyltransferase; Provisional
Probab=88.05 E-value=0.89 Score=50.17 Aligned_cols=49 Identities=20% Similarity=0.128 Sum_probs=39.1
Q ss_pred CEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCC
Q 007275 497 GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 546 (609)
Q Consensus 497 g~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G 546 (609)
-.+|||..--.. ......|+||.|.|.||++|+|+.|++..=+..+..|
T Consensus 369 ~HiVGYFSKEK~-S~~~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 369 CHIVGYFSKEKV-SLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred cEEEEEeccccc-CcccCceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 478998765422 2234579999999999999999999999988887765
No 185
>PLN03239 histone acetyltransferase; Provisional
Probab=86.87 E-value=1.3 Score=46.96 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=38.6
Q ss_pred CEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCC
Q 007275 497 GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 546 (609)
Q Consensus 497 g~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G 546 (609)
-.+|||..--.. ......|+||.|.|.||++|+|+.|++..=+..+..|
T Consensus 198 ~h~vGYFSKEK~-s~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 198 FHPVGYYSKEKY-SDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred eEEEEEeeeccc-CCCCCceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 458887765421 2234579999999999999999999999988887765
No 186
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=86.78 E-value=4.5 Score=40.36 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=66.0
Q ss_pred cCCHHHHHHHHhhhHhhccCccCCHHHHHhhc---CeEEEEEE-CCEEEEEEEEEEec-CCC-eEEEEEEEEcccCcCCc
Q 007275 456 VTDLSGIKQIIQPLVESGALVRRTDEELLKAL---DSFYVVER-EGQIIACAALFPFF-KEK-CGEVAAIGVSPECRGQG 529 (609)
Q Consensus 456 ~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i---~~~~V~~~-dg~IVG~~~l~~~~-~~~-~~eI~~iaV~p~~RgqG 529 (609)
+.++++..+++...+..........+.+.... ...+.+.. |+++||..-=+|-. ..+ ..+-+.++|.|++++.|
T Consensus 11 p~el~~~~dV~~~aWg~~d~~~~~~d~i~al~~~GGlvlgAf~~dg~lVGls~G~pg~r~g~~y~ySH~~gV~e~~k~sg 90 (266)
T COG3375 11 PAELDEAEDVQASAWGSEDRDGAPADTIRALRYHGGLVLGAFSADGRLVGLSYGYPGGRGGSLYLYSHMLGVREEVKGSG 90 (266)
T ss_pred HHHHHHHHHHHHHHhCccccccchHHHHHHHHhcCCeEEEEEcCCCcEEEEEeccCCcCCCceeeeeeehhccccccccc
Confidence 44556666665554443332222233333221 33444454 45999987666522 222 45667899999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeHHHH
Q 007275 530 QGDKLLDYIEKKAASLGLDMLFLLTTRTA 558 (609)
Q Consensus 530 iG~~LL~~l~~~A~~~G~~~I~l~t~~a~ 558 (609)
+|-+|=..=.+++.++|+..+..+-.+..
T Consensus 91 lg~aLK~~Qre~a~~~G~tli~WTfDPl~ 119 (266)
T COG3375 91 LGVALKMKQRERALSMGYTLIAWTFDPLN 119 (266)
T ss_pred hhhhhHHHHHHHHHhcCeeeEEEecccch
Confidence 99999888888999999999877654433
No 187
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=86.65 E-value=5.1 Score=42.51 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=79.8
Q ss_pred cccccCCcCCHHHHHHHHhhh-HhhccCccCCHHHHHhhcC------eEEEEEE-CCEEEEEEEEEEecCC---------
Q 007275 449 EGTRTAKVTDLSGIKQIIQPL-VESGALVRRTDEELLKALD------SFYVVER-EGQIIACAALFPFFKE--------- 511 (609)
Q Consensus 449 ~~IR~a~~~D~~~I~~L~~~~-~~~~~~~~~~~e~l~~~i~------~~~V~~~-dg~IVG~~~l~~~~~~--------- 511 (609)
..+|+++..|++++.+|+... .+.......+.+++..|+. ..||++. +|+|-+|+.++..+..
T Consensus 261 ~G~R~me~kDvp~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~e~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~~~kt 340 (421)
T KOG2779|consen 261 PGLREMEEKDVPAVFRLLRNYLKQFELAPVFDEEEVEHWFLPRENVVYSYVVESPNGKITDFCSFYSLPSTVMGNPKYKT 340 (421)
T ss_pred CCcccccccchHHHHHHHHHHHHheecccccCHHHhHhhcccccceEEEEEEECCCCcccceeeEEeccccccCCCCcce
Confidence 359999999999999999774 4445566678899998872 3466665 8999999999853321
Q ss_pred -CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe-HHHHHHHHHCCCeEe
Q 007275 512 -KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFREC 569 (609)
Q Consensus 512 -~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t-~~a~~fYek~GF~~~ 569 (609)
..+++ ...|+.+ ---.+||..++-.|+..|+....+.. -....|+.+++|-.-
T Consensus 341 l~aaYl-yY~v~~~----t~~~~lvnDalilak~~gfDVFNAld~meN~~fl~~LkFg~G 395 (421)
T KOG2779|consen 341 LQAAYL-YYNVATS----TPLLQLVNDALILAKQKGFDVFNALDLMENESFLKDLKFGPG 395 (421)
T ss_pred eeeeeE-EEeccCC----ccHHHHHHHHHHHHHhcCCceeehhhhhhhhhHHHhcCcCcC
Confidence 12333 2333322 12456788888888988887654433 256789999999764
No 188
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=86.41 E-value=11 Score=34.69 Aligned_cols=60 Identities=20% Similarity=0.183 Sum_probs=46.2
Q ss_pred EEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEE
Q 007275 491 YVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFL 552 (609)
Q Consensus 491 ~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l 552 (609)
.-...||++||++.+...+ +..--+ =.+-+|++....+|+-.+=.-+++|++.|++.+++
T Consensus 42 ~~~~~~~kLiav~v~D~l~-~glSaV-Y~fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~YL 101 (128)
T PF04377_consen 42 LEYRLDGKLIAVAVVDILP-DGLSAV-YTFYDPDYSKRSLGTYSILREIELARELGLPYYYL 101 (128)
T ss_pred EEEEeCCeEEEEEEeeccc-chhhhe-eeeeCCCccccCcHHHHHHHHHHHHHHcCCCEEee
Confidence 3334789999998776333 322223 23349999999999999999999999999999988
No 189
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=86.23 E-value=0.55 Score=50.97 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=46.5
Q ss_pred CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEE-----eH----HHHHHHHHCCCeEe
Q 007275 512 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLL-----TT----RTADWFKSRGFREC 569 (609)
Q Consensus 512 ~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~-----t~----~a~~fYek~GF~~~ 569 (609)
..+.|+++.|||+||+-|+|..-+..+.+|..++-+...+-. +. +-.+||++.||+..
T Consensus 240 aaariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkyl 306 (593)
T COG2401 240 AAARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYL 306 (593)
T ss_pred hhhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeee
Confidence 346799999999999999999999999999988766554332 21 33579999999965
No 190
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=85.83 E-value=9.2 Score=38.94 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=56.3
Q ss_pred ccCccCCHHHHHhhc-----C-eEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCC
Q 007275 473 GALVRRTDEELLKAL-----D-SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 546 (609)
Q Consensus 473 ~~~~~~~~e~l~~~i-----~-~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G 546 (609)
+-+.+.+.+++...+ . .++-...+|++||.+.+...+ +..--| -.+-+|++-..++|+-.+-.-+++|++.|
T Consensus 123 g~m~~~~~~~y~~Fl~~~~~~t~~~ey~~~g~LiaVav~D~l~-d~lSAV-Y~FyDPd~~~~SLG~~~iL~qI~~ak~~g 200 (240)
T PRK01305 123 GGMDPPSRDQYAQFLEDSWVNTRFIEFRGDGKLVAVAVTDVLD-DGLSAV-YTFYDPDEEHRSLGTFAILWQIELAKRLG 200 (240)
T ss_pred CCCCCCCHHHHHHHHhcCCCCcEEEEEEeCCeEEEEEEEeccC-CceeeE-EEeeCCCccccCCHHHHHHHHHHHHHHcC
Confidence 333445666666554 2 233334689999998886433 332233 24459999999999999999999999999
Q ss_pred CCEEEEEe
Q 007275 547 LDMLFLLT 554 (609)
Q Consensus 547 ~~~I~l~t 554 (609)
++.+++.-
T Consensus 201 l~y~YLGY 208 (240)
T PRK01305 201 LPYVYLGY 208 (240)
T ss_pred CCeEeeeE
Confidence 99999843
No 191
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=85.65 E-value=0.93 Score=49.80 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=38.7
Q ss_pred CEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCC
Q 007275 497 GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 546 (609)
Q Consensus 497 g~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G 546 (609)
..+|||..--.. ......|+||.|.|.||++|+|+.|++..=+..+..|
T Consensus 291 ~h~vGyFSKEk~-s~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 291 CHMVGYFSKEKH-SEEDYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred cEEEEEeccccc-CcCCCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 479998866522 2233579999999999999999999998888877665
No 192
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=84.78 E-value=6.8 Score=41.50 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=59.0
Q ss_pred EEEEE-ECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeH----HHHHHHHHC
Q 007275 490 FYVVE-REGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT----RTADWFKSR 564 (609)
Q Consensus 490 ~~V~~-~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~----~a~~fYek~ 564 (609)
++++. .+|+++|.+.+... ++..+....+.+++++..+-+..|+-.++++|.++|++..-+... ...+|-++.
T Consensus 197 l~~a~~~~g~~va~~l~~~~--~~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~ 274 (330)
T TIGR03019 197 VLTVRLGDGVVASAVLSFYF--RDEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNW 274 (330)
T ss_pred EEEEEeCCCCEEEEEEEEEe--CCEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcC
Confidence 45566 68999888766533 233332244667999999999999999999999999998877552 345677788
Q ss_pred CCeEeeee
Q 007275 565 GFRECSIE 572 (609)
Q Consensus 565 GF~~~~~~ 572 (609)
||+.....
T Consensus 275 G~~~~~l~ 282 (330)
T TIGR03019 275 GFEPQPLH 282 (330)
T ss_pred CCeeccce
Confidence 99976543
No 193
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=81.72 E-value=8.2 Score=39.65 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHHHHHHCCCCEEEEEeH-HHHHHHHHCCCeEeeeecchhHhhhhcccCCCceeEEeecCCC
Q 007275 528 QGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPD 598 (609)
Q Consensus 528 qGiG~~LL~~l~~~A~~~G~~~I~l~t~-~a~~fYek~GF~~~~~~~lp~~~~~~y~~~~~s~i~mkkll~~ 598 (609)
.+-...|++.+.+.|++.|+.+|++.+. ....+|++.||...+... .|.. ..+.++|-+.+..
T Consensus 20 ~~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~~~g~~~e~~i~-------~~f~-g~~~~~~~~~~~~ 83 (266)
T TIGR03827 20 GNDVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFEERGYLEEAKIP-------GYFN-GHDAYFMSKYLDE 83 (266)
T ss_pred CccHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHHHCCCeEEEecc-------cccC-CCceEEEEEcCch
Confidence 3458899999999999999999999995 567999999999977652 2332 3578888887764
No 194
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=81.64 E-value=5.2 Score=36.14 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=33.6
Q ss_pred EEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe--HHHHHHHHH
Q 007275 515 EVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT--TRTADWFKS 563 (609)
Q Consensus 515 eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t--~~a~~fYek 563 (609)
.|-+++|++..|++|+|++|.+++++.- ......+-.+. .....|.+|
T Consensus 48 cvLDFyVhes~QR~G~Gk~LF~~ML~~e-~~~p~~~a~DrPS~Kll~Fl~K 97 (120)
T PF05301_consen 48 CVLDFYVHESRQRRGYGKRLFDHMLQEE-NVSPHQLAIDRPSPKLLSFLKK 97 (120)
T ss_pred eeeeEEEEeceeccCchHHHHHHHHHHc-CCCcccceecCCcHHHHHHHHH
Confidence 4568999999999999999999998752 22233333333 245677766
No 195
>PRK14852 hypothetical protein; Provisional
Probab=80.87 E-value=8.2 Score=46.73 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=84.4
Q ss_pred cccC-CcCCHHHHHHHHhhh-HhhccCccCCHHHHHh---hc--CeEEEEEECCEEEEEEEEEEecC-------------
Q 007275 451 TRTA-KVTDLSGIKQIIQPL-VESGALVRRTDEELLK---AL--DSFYVVEREGQIIACAALFPFFK------------- 510 (609)
Q Consensus 451 IR~a-~~~D~~~I~~L~~~~-~~~~~~~~~~~e~l~~---~i--~~~~V~~~dg~IVG~~~l~~~~~------------- 510 (609)
+|.+ +.+|+..+..|..+. ...++..+-....+.. .+ ...|+....+++++...+.+...
T Consensus 31 ~r~Aet~~e~~~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp~t~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~e 110 (989)
T PRK14852 31 IKIAETPDEYTRAFRLVYEEYIRSGYLKPHPSRMYYNVWSILPATSVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPE 110 (989)
T ss_pred eeecCCHHHHHHHHHHHHHHHHHcCCCCcCcccccCCccccCCcceEEEeccCCcEEEEEEEecCCcccCcCHHHHHHHH
Confidence 5665 577788888888774 4456653322211111 11 23466666577777777653211
Q ss_pred --------CCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeH-HHHHHHHH-CCCeEeee
Q 007275 511 --------EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKS-RGFRECSI 571 (609)
Q Consensus 511 --------~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~-~a~~fYek-~GF~~~~~ 571 (609)
...+++.+++++|+.|.+-+=-.|++.+.+++...++..+.+.++ +=..||++ +||+..+.
T Consensus 111 Ld~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH~~FY~r~l~f~~ig~ 181 (989)
T PRK14852 111 VDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKHVKFYTDIFLFKPFGE 181 (989)
T ss_pred HHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcchHHHHHHHhCCccccc
Confidence 146899999999999988877788899988888889999999886 45789997 79998764
No 196
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=80.63 E-value=1.8 Score=37.69 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=34.1
Q ss_pred CeEEEEEECCEEEEEEEEEEec----------------------CCCeEEEEEEEEcccCcCCcHHHHHH
Q 007275 488 DSFYVVEREGQIIACAALFPFF----------------------KEKCGEVAAIGVSPECRGQGQGDKLL 535 (609)
Q Consensus 488 ~~~~V~~~dg~IVG~~~l~~~~----------------------~~~~~eI~~iaV~p~~RgqGiG~~LL 535 (609)
..+++.+.+.++||++.+.... ....+||.+++|+|+||+...-..|+
T Consensus 31 ~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 31 VHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred cEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 3444544444599999986311 12568999999999999998877775
No 197
>PHA01733 hypothetical protein
Probab=80.62 E-value=5.4 Score=37.58 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=65.7
Q ss_pred ccccCCcCCHHHHHH-HHhh--hHhhccCccCCHHHHH----hhcCeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEc
Q 007275 450 GTRTAKVTDLSGIKQ-IIQP--LVESGALVRRTDEELL----KALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVS 522 (609)
Q Consensus 450 ~IR~a~~~D~~~I~~-L~~~--~~~~~~~~~~~~e~l~----~~i~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~ 522 (609)
.|||+|.+|+..+.. +... .+.++... +...+. ..-...+....||+++|.+...+...++.+.+..+..+
T Consensus 4 ~IrpaT~~d~~~l~~n~r~~Dr~E~ealg~--~p~~l~~~~~~s~~~v~~~~~nG~l~aI~Gv~~d~~~~vG~pWlV~T~ 81 (153)
T PHA01733 4 NNRPATQADATEVAQNLRQEDREEIEGLGH--SPLALHLSLDVSENVVAFVAPDGSLAGVAGLVEDMGNRVGEIWMVCTP 81 (153)
T ss_pred ccccccHHHHHHHHccCCHHHHHHHHHhCC--CcccchhhhhccccceEEEecCCcEEEEecccccccCCCCceeEEecH
Confidence 489999999876666 3222 12222211 111222 12234466777899999999986333555666445544
Q ss_pred ccCcCCcHHHHHHHHHHHHHH-HCCCCEEEEEe----HHHHHHHHHCCCeEeee
Q 007275 523 PECRGQGQGDKLLDYIEKKAA-SLGLDMLFLLT----TRTADWFKSRGFRECSI 571 (609)
Q Consensus 523 p~~RgqGiG~~LL~~l~~~A~-~~G~~~I~l~t----~~a~~fYek~GF~~~~~ 571 (609)
.=.+ +-.+.+..+..+.. ...+..++-.+ ..+++|.+.+||+....
T Consensus 82 ~v~k---~~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~ 132 (153)
T PHA01733 82 AIEK---NPIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGFKGLRY 132 (153)
T ss_pred HhHh---CCHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCceeecc
Confidence 3222 22334444444433 33455555444 37899999999997543
No 198
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=76.93 E-value=2.9 Score=45.22 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=29.4
Q ss_pred CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCC
Q 007275 512 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 546 (609)
Q Consensus 512 ~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G 546 (609)
....++||.|.|.||++|+|+.|++..=+.-+..|
T Consensus 259 ~~yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E~ 293 (396)
T KOG2747|consen 259 ENYNLACILTLPPYQRKGYGKLLIDFSYELSRREG 293 (396)
T ss_pred cccceeeeeecChhhhcccchhhhhhhhhhhcccC
Confidence 34569999999999999999999998877775543
No 199
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=72.89 E-value=8.1 Score=41.06 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=45.4
Q ss_pred ECCEEEEEEEEEEe----cC--CCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCE
Q 007275 495 REGQIIACAALFPF----FK--EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDM 549 (609)
Q Consensus 495 ~dg~IVG~~~l~~~----~~--~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~ 549 (609)
..+++|||+.-.|. .+ -+..+|.-+|||.+.|.++++--|++.+.+++.-.|+-+
T Consensus 143 ~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfq 203 (421)
T KOG2779|consen 143 SSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQ 203 (421)
T ss_pred cCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhh
Confidence 45799999987752 11 257899999999999999999999999999998777543
No 200
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=69.44 E-value=31 Score=35.93 Aligned_cols=66 Identities=18% Similarity=0.108 Sum_probs=43.2
Q ss_pred CeEEEEEE-CCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe
Q 007275 488 DSFYVVER-EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 554 (609)
Q Consensus 488 ~~~~V~~~-dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t 554 (609)
..++++.. ||+++||+.+.+....+.+.++-.--+|+ -=+|+-..|+..+.+.+++.|++.+-|..
T Consensus 180 ~~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~ 246 (299)
T PF09924_consen 180 LRGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGF 246 (299)
T ss_dssp -EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS--TT--EEE---
T ss_pred ceEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEccc
Confidence 45677777 99999999999876444555543444555 34799999999999999989999987644
No 201
>PHA00432 internal virion protein A
Probab=66.92 E-value=27 Score=32.43 Aligned_cols=110 Identities=11% Similarity=0.047 Sum_probs=57.2
Q ss_pred cccCCcCCHHHHHHHHhh--hHhhccCccCCHHHHHhhcCeEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcc---cC
Q 007275 451 TRTAKVTDLSGIKQIIQP--LVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSP---EC 525 (609)
Q Consensus 451 IR~a~~~D~~~I~~L~~~--~~~~~~~~~~~~e~l~~~i~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p---~~ 525 (609)
|||+|.+|+..+ ++... .+..++..... ...-..++....+|++++.+. ......+.++.=+|.. .+
T Consensus 3 I~paT~~di~~~-~lr~~D~~E~~a~g~~~~----~~~s~~~~~~~~~G~~~aI~G---n~G~~vW~v~T~~v~~~~~~~ 74 (137)
T PHA00432 3 IRQTTERDFDVF-NPSFEDILEAKAYGIEPS----FPPDSECVTLSLDGFVLAIGG---NQGDQVWFVTSDQVWRLTKKE 74 (137)
T ss_pred cccccHHHHHHc-CCCHHHHHHHHhcCCCCC----CCCCceEEEEecCCeEEEEec---CCCCceEEEecHHhhhCChhh
Confidence 899999998888 43221 11111111000 011245778888999988773 1122224444444432 12
Q ss_pred cCCcHHHHHHHHHHHHHHHCCCCEEEEEe----HHHHHHHHHCCCeEeee
Q 007275 526 RGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 571 (609)
Q Consensus 526 RgqGiG~~LL~~l~~~A~~~G~~~I~l~t----~~a~~fYek~GF~~~~~ 571 (609)
| +..=+.++.++....++ +..++-.+ ..+++|.+.+||+....
T Consensus 75 ~-reF~k~~~~~ld~ml~~--yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 75 K-REFRKLIMEYRDMMLDQ--YPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred h-HHHHHHHHHHHHHHHHh--hhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 1 22333333333333332 55555544 47899999999997654
No 202
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.92 E-value=12 Score=37.57 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=34.7
Q ss_pred CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeH--HHHHHHHH
Q 007275 512 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT--RTADWFKS 563 (609)
Q Consensus 512 ~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~--~a~~fYek 563 (609)
....|-+++|++..|++|.|.+|++++++. +......+.+.-. ....|.+|
T Consensus 107 e~lcILDFyVheS~QR~G~G~~lfdyMl~k-E~vephQ~a~DrPS~kLl~Fm~k 159 (264)
T KOG4601|consen 107 EALCILDFYVHESEQRSGNGFKLFDYMLKK-ENVEPHQCAFDRPSAKLLQFMEK 159 (264)
T ss_pred CCceEEEEEeehhhhhcCchHHHHHHHHHh-cCCCchheeccChHHHHHHHHHH
Confidence 445677999999999999999999999874 2222334444331 34556544
No 203
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=57.11 E-value=69 Score=33.65 Aligned_cols=90 Identities=19% Similarity=0.183 Sum_probs=63.8
Q ss_pred hcCeEEEEEECCEEEEEEEEEEecCC-----CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCC--------CCEEEE
Q 007275 486 ALDSFYVVEREGQIIACAALFPFFKE-----KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG--------LDMLFL 552 (609)
Q Consensus 486 ~i~~~~V~~~dg~IVG~~~l~~~~~~-----~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G--------~~~I~l 552 (609)
...+..++...+.+|+.+.+.|..+. -...|..+.|+.-|..-|+=.-|++++.-++++.. -..+.+
T Consensus 167 ~~~NT~IIvYRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~l 246 (304)
T PF11124_consen 167 NGKNTHIIVYRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKL 246 (304)
T ss_pred cCCcceEEEEcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEE
Confidence 33444455545789999999875432 23568899999999999999999999977665421 113444
Q ss_pred Ee------HHHHHHHHHCCCeEee-eecch
Q 007275 553 LT------TRTADWFKSRGFRECS-IEMIP 575 (609)
Q Consensus 553 ~t------~~a~~fYek~GF~~~~-~~~lp 575 (609)
.+ ....+..++.||+..+ ...+.
T Consensus 247 l~d~YSFD~~~~k~L~~~gF~~i~ss~~ln 276 (304)
T PF11124_consen 247 LVDVYSFDKDMKKTLKKKGFKKISSSFKLN 276 (304)
T ss_pred EEEeeeccHHHHHHHHHCCCeeeecceecC
Confidence 33 4788999999999988 44443
No 204
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=55.48 E-value=60 Score=31.58 Aligned_cols=106 Identities=14% Similarity=0.240 Sum_probs=71.0
Q ss_pred CCHHHHHHHHhhhHhhccCccCCHHHHHhhcCeEEEE-EECCEEEEEEEEEEecC-------------------------
Q 007275 457 TDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVV-EREGQIIACAALFPFFK------------------------- 510 (609)
Q Consensus 457 ~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~i~~~~V~-~~dg~IVG~~~l~~~~~------------------------- 510 (609)
.+...+.+++++-+...+... +...+..++.. +.+|++++++.+..-..
T Consensus 8 ~~r~~~e~fI~~~y~~~~~A~-----i~~f~P~ll~l~~~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v 82 (179)
T PF12261_consen 8 PERAEVEQFIRQRYAQAYGAT-----IRHFMPQLLALRDSDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPV 82 (179)
T ss_pred hhHHHHHHHHHHHHHHHhCCc-----CCccchHHhhhccCCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCc
Confidence 345566777666555443211 11111122333 56899999998864211
Q ss_pred --CCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeH-HHHHHHHHCCCeEeee
Q 007275 511 --EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECSI 571 (609)
Q Consensus 511 --~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~-~a~~fYek~GF~~~~~ 571 (609)
....||+.++.. +.|.+..|+..+..+....|++.+..+.| +.++++.++|......
T Consensus 83 ~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~rlgl~~~~L 142 (179)
T PF12261_consen 83 SRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFRRLGLPPTVL 142 (179)
T ss_pred chhheeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHcCCCceec
Confidence 134678888753 58999999999999999999998776654 7789999999997643
No 205
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=55.23 E-value=41 Score=38.12 Aligned_cols=126 Identities=13% Similarity=0.154 Sum_probs=81.4
Q ss_pred cccccccCCcCCHHHHHHHHhhhH-hhccCccC-CHHHHHhh-----c-----CeEEEEEE-CCEEEEEEEEEE----ec
Q 007275 447 LYEGTRTAKVTDLSGIKQIIQPLV-ESGALVRR-TDEELLKA-----L-----DSFYVVER-EGQIIACAALFP----FF 509 (609)
Q Consensus 447 ~~~~IR~a~~~D~~~I~~L~~~~~-~~~~~~~~-~~e~l~~~-----i-----~~~~V~~~-dg~IVG~~~l~~----~~ 509 (609)
|+..|||.+..|-..+..+....+ ..+-..++ +...+..+ + +.++|+++ +++|+|++.... +.
T Consensus 678 ~~y~iRPy~~~De~~v~~~ct~my~d~g~~lpf~n~pn~~~d~liggllsls~~lC~v~~de~~~i~gYa~a~~Dvt~F~ 757 (891)
T KOG3698|consen 678 MFYDIRPYTIADEEYVSGMCTVMYTDNGELLPFRNAPNFADDNLIGGLLSLSEHLCEVVDDEGHKIVGYASAHFDVTLFS 757 (891)
T ss_pred eeEeeccCccccHHHHHhhhhheeccCceeccCCCCCccccccchhheeccChhheeeeecCCCceeEEeeeecccchhh
Confidence 678999999999999998877655 22222221 22222222 1 34666665 566999987531 00
Q ss_pred ----------------C-------C----------------Ce--EE--------------EEEEEEcccCcCCcHHHHH
Q 007275 510 ----------------K-------E----------------KC--GE--------------VAAIGVSPECRGQGQGDKL 534 (609)
Q Consensus 510 ----------------~-------~----------------~~--~e--------------I~~iaV~p~~RgqGiG~~L 534 (609)
. + .. .. +-..+++.+.-.-++.+++
T Consensus 758 rn~~i~w~~~l~EKY~~~i~p~~~g~~~~~~~e~i~~S~h~~~~~~~~~~~P~~~~~nfPa~v~~~~~~~a~D~~~~k~m 837 (891)
T KOG3698|consen 758 RNFLITWKEKLKEKYRGLIEPIGSGKLTDEYIEFIQNSQHPMDIEEWYPKIPDQIFENFPAWVETYFGMDASDAHPMKKM 837 (891)
T ss_pred hceeeeeHHHHHHHhhccccccCCchhHHHHHHHHHHccCccchhhccccCcHHHHhcChHHHhhccccccccchHHHHH
Confidence 0 0 00 00 0023344455566899999
Q ss_pred HHHHHHHHHHCCCCEEEEEeH----HHHHHHHHCCCeEeeee
Q 007275 535 LDYIEKKAASLGLDMLFLLTT----RTADWFKSRGFRECSIE 572 (609)
Q Consensus 535 L~~l~~~A~~~G~~~I~l~t~----~a~~fYek~GF~~~~~~ 572 (609)
|+.+..-.+..|++--++.+. +-..||.++||...+..
T Consensus 838 ~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~ 879 (891)
T KOG3698|consen 838 IQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGLS 879 (891)
T ss_pred HHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhHh
Confidence 999999999999998888872 56789999999876554
No 206
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=54.12 E-value=45 Score=29.73 Aligned_cols=64 Identities=22% Similarity=0.275 Sum_probs=43.9
Q ss_pred EEECCEEEEEEEEEEec-----CCCeEEEEEEEEcccCcC-CcHHHHHHHHHHHHHHHCCCCE-EEEEe---HHHHHHH
Q 007275 493 VEREGQIIACAALFPFF-----KEKCGEVAAIGVSPECRG-QGQGDKLLDYIEKKAASLGLDM-LFLLT---TRTADWF 561 (609)
Q Consensus 493 ~~~dg~IVG~~~l~~~~-----~~~~~eI~~iaV~p~~Rg-qGiG~~LL~~l~~~A~~~G~~~-I~l~t---~~a~~fY 561 (609)
+..++..-|++.+.+.. ....++|..++|.+.-|| .|++..+...+.+. ..+ ++..+ .+..+||
T Consensus 14 ~y~~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~~-----fp~~L~Wrsr~~n~~n~Wy 87 (108)
T cd04266 14 VIIAGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLDG-----FPNELIWRSRKDNPVNKWY 87 (108)
T ss_pred EEEeCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHHc-----CCCceEEEeCCCCcccceE
Confidence 33455555666665322 146789999999999997 89999999988873 333 55544 3556666
No 207
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=53.09 E-value=45 Score=35.14 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=46.6
Q ss_pred CeEEEEeCCcccCCCC-h----HHHHHHHHHHHhCCCeEEEEECC-hHHHhHHHHHcCCcccc
Q 007275 100 GTFVVIISGEIVSSPY-L----DPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKY 156 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-l----~~l~~~Ia~L~~~G~~vVLVhGg-G~~i~~~l~~~g~~~~~ 156 (609)
+.+|.-+.|.+++++. + ..+.+.|..|++.|+++.|+++| ...+...++.+++..-|
T Consensus 129 ~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 129 HVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred cEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc
Confidence 6799999999998855 2 55778888899999999999866 67788888999987543
No 208
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=49.36 E-value=7.4 Score=41.23 Aligned_cols=100 Identities=15% Similarity=0.075 Sum_probs=56.2
Q ss_pred CCccccccccccccccCCcCCHHHHHH---HHhhhHhhccCccCCHHHHHhhcCeEEEEEEC----CEEEEEEEEEEecC
Q 007275 438 GMGTMVASDLYEGTRTAKVTDLSGIKQ---IIQPLVESGALVRRTDEELLKALDSFYVVERE----GQIIACAALFPFFK 510 (609)
Q Consensus 438 g~GT~i~~d~~~~IR~a~~~D~~~I~~---L~~~~~~~~~~~~~~~e~l~~~i~~~~V~~~d----g~IVG~~~l~~~~~ 510 (609)
..|--|+.|.++.+..+.-.-..-+-+ ++..+.-.+-..- +.-+.-.|||+.+. -++|||..-. ...
T Consensus 186 pPG~eiYrD~~iS~~EiDG~~q~~~CrnLCLlsKlFLd~KtLY-----yDVDpflFYvl~~~~~~~~h~vGyFSKE-K~S 259 (395)
T COG5027 186 PPGNEIYRDKYISFFEIDGRKQRLYCRNLCLLSKLFLDHKTLY-----YDVDPFLFYVLTERGDTGCHLVGYFSKE-KES 259 (395)
T ss_pred CCCceeeecCceEEEEEcCcchhhHHHHHHHHHHHHhcCceeE-----EeccceEEEEEEEcCCcceeeeeeechh-hcc
Confidence 456677777777777665443332222 1111111111000 00011245666542 2478877654 223
Q ss_pred CCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHH
Q 007275 511 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA 543 (609)
Q Consensus 511 ~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~ 543 (609)
.....++||-+.|.||++|+|+.|++..=...+
T Consensus 260 ~~~yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~ 292 (395)
T COG5027 260 EQDYNLACILTLPPYQRRGYGKLLIDFSYLLSQ 292 (395)
T ss_pred cccCceEEEEecChhHhcccceEeeeeeeeccc
Confidence 345679999999999999999999986555444
No 209
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=48.62 E-value=1.7e+02 Score=31.76 Aligned_cols=111 Identities=16% Similarity=0.012 Sum_probs=64.9
Q ss_pred CcCCHHHHHHHHhhhHhhccCccC-CHHHH---Hhhc-C--eEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcC
Q 007275 455 KVTDLSGIKQIIQPLVESGALVRR-TDEEL---LKAL-D--SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRG 527 (609)
Q Consensus 455 ~~~D~~~I~~L~~~~~~~~~~~~~-~~e~l---~~~i-~--~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~Rg 527 (609)
++++++.+..++..........+. +.+-+ .+.+ + .++++..++++||++.+.. +++..+-.-.....++.+
T Consensus 211 ~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l~--~~~~LyGRYwG~~~~~~~ 288 (370)
T PF04339_consen 211 TDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVAFALCLR--GDDTLYGRYWGCDEEIPF 288 (370)
T ss_pred CHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEEE--eCCEEEEeeecccccccC
Confidence 445677777777765554433332 22222 2222 2 2456678999999998873 234444333344455544
Q ss_pred CcHHHHHHHHHHHHHHHCCCCEEEEEeHHHHHHHHHCCCeEee
Q 007275 528 QGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECS 570 (609)
Q Consensus 528 qGiG~~LL~~l~~~A~~~G~~~I~l~t~~a~~fYek~GF~~~~ 570 (609)
.- -....=..+++|-++|++++...+..- -=..+||+++.
T Consensus 289 LH-Fe~cYYq~Ie~aI~~Gl~~f~~GaqGE--HK~~RGf~P~~ 328 (370)
T PF04339_consen 289 LH-FELCYYQGIEYAIEHGLRRFEPGAQGE--HKIARGFEPVP 328 (370)
T ss_pred cc-hHHHHHHHHHHHHHcCCCEEECCcchh--HHHHcCCcccc
Confidence 42 444556788999999999987665322 22357888764
No 210
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=48.54 E-value=46 Score=27.19 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=24.7
Q ss_pred eEEEEeCCcccCCCChHHHHHHHHHHHhCCCeEEEEECCh
Q 007275 101 TFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTH 140 (609)
Q Consensus 101 ~iVIKlGGsvl~~~~l~~l~~~Ia~L~~~G~~vVLVhGgG 140 (609)
+.||--||.-.++ ...+...|..++..--..+|||||.
T Consensus 4 ~rVli~GgR~~~D--~~~i~~~Ld~~~~~~~~~~lvhGga 41 (71)
T PF10686_consen 4 MRVLITGGRDWTD--HELIWAALDKVHARHPDMVLVHGGA 41 (71)
T ss_pred CEEEEEECCcccc--HHHHHHHHHHHHHhCCCEEEEECCC
Confidence 4555578877765 4445555555555445688999997
No 211
>PTZ00063 histone deacetylase; Provisional
Probab=47.01 E-value=68 Score=35.63 Aligned_cols=65 Identities=18% Similarity=0.340 Sum_probs=50.0
Q ss_pred chhHHHHHHHHhh-hhHHhhcCCeEEEEeCCcccCCCC-------hHHHHHHHHHHHhCCCeEEEEECChHHH
Q 007275 79 EDEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQI 143 (609)
Q Consensus 79 ~~~~~~~~~r~a~-pyi~~~~~k~iVIKlGGsvl~~~~-------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i 143 (609)
....|...|++.. |-+..|+-..||+-.|..++..+. .+...+-+..+.+.+.++++|-|||-..
T Consensus 230 ~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~~ 302 (436)
T PTZ00063 230 DDDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGGYTI 302 (436)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCccCCc
Confidence 3778999999865 788999999999999999987643 2444554555667788999999886543
No 212
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=46.50 E-value=67 Score=33.81 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=47.0
Q ss_pred CCeEEEEeCCcccCCCC-h----HHHHHHHHHHHhCCCeEEEEECCh-HHHhHHHHHcCCcccc
Q 007275 99 GGTFVVIISGEIVSSPY-L----DPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHEAKY 156 (609)
Q Consensus 99 ~k~iVIKlGGsvl~~~~-l----~~l~~~Ia~L~~~G~~vVLVhGgG-~~i~~~l~~~g~~~~~ 156 (609)
.+.||.=+.|.+++++. . +.+.+.|..|++.|++++|+++++ ..+...++++|+..-|
T Consensus 126 ~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 126 PHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred ceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 36899999999999865 2 577888889999999999998764 5577788899987543
No 213
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=43.17 E-value=64 Score=36.73 Aligned_cols=65 Identities=23% Similarity=0.241 Sum_probs=52.3
Q ss_pred eEEEEEECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe
Q 007275 489 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 554 (609)
Q Consensus 489 ~~~V~~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t 554 (609)
.+-+++.+|+|+||+.+.+........|+-+=-+|+-= +|+=+.|+..+..++|++|++++.+.-
T Consensus 394 ~va~~~~~g~VvaFa~l~~~~~~~~~SlDlMR~sp~ap-~g~mdfLf~~li~~aKe~G~~~fsLgm 458 (538)
T COG2898 394 PVAAVDNEGEVVAFANLMPTGGKEGYSLDLMRRSPDAP-NGTMDFLFSELILWAKEEGYQRFSLGM 458 (538)
T ss_pred eeeEEcCCCCeEEEEeecccCCcceeEEEeeecCCCCC-chHHHHHHHHHHHHHHHcCCeEEecCC
Confidence 34556678899999999976655666676666677664 799999999999999999999988754
No 214
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=43.11 E-value=30 Score=37.16 Aligned_cols=45 Identities=16% Similarity=0.420 Sum_probs=33.8
Q ss_pred EEEEEEEEEec---CCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHH
Q 007275 499 IIACAALFPFF---KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA 543 (609)
Q Consensus 499 IVG~~~l~~~~---~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~ 543 (609)
++|+.+++.+. +.-...|.-+.+.|.||++|+|..|++.+.+.-.
T Consensus 200 ~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~ 247 (403)
T KOG2696|consen 200 YVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYL 247 (403)
T ss_pred eeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhc
Confidence 56666665322 2334678899999999999999999999996543
No 215
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=42.58 E-value=51 Score=31.82 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=42.3
Q ss_pred eEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeH-HHHHHHHHCC
Q 007275 513 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRG 565 (609)
Q Consensus 513 ~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~-~a~~fYek~G 565 (609)
.+|++.++|.|+.+|.||+..| ..+.-..+++|+..-|-.+- ...+.+++++
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R~~ 137 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVERLC 137 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHHHh
Confidence 4689999999999999999965 67777888999999888884 4456666655
No 216
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.54 E-value=2.3e+02 Score=29.07 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=63.7
Q ss_pred ccccCCcCC--HHHHHHHHhhhHhhccCccCCHHHHHhhcC------eEEEEE------ECCEEEEEEEEEEecCCCeEE
Q 007275 450 GTRTAKVTD--LSGIKQIIQPLVESGALVRRTDEELLKALD------SFYVVE------REGQIIACAALFPFFKEKCGE 515 (609)
Q Consensus 450 ~IR~a~~~D--~~~I~~L~~~~~~~~~~~~~~~e~l~~~i~------~~~V~~------~dg~IVG~~~l~~~~~~~~~e 515 (609)
.+++++.++ +......+..-...+-+.+.+..++...+. .++-.. -.|++|+++...... ++.--
T Consensus 99 ~~~~a~~s~E~y~LyrrY~~~rH~~g~m~~~s~~~f~~f~~d~~~~~~~~e~r~~~~~~~~G~LvAVavtDvL~-dGlSs 177 (253)
T COG2935 99 RVEPAEYSEEQYELYRRYLDQRHADGGMSDMSFKDFAAFLEDTHVNTQLIEYRRRKPGKGEGKLVAVAVTDVLP-DGLSS 177 (253)
T ss_pred EEccCCCCHHHHHHHHHHHHHHcccCCCCCccHHHHHHHHhccccceeeEEEEecCCCCCCCcEEEEEeeeccc-Cccee
Confidence 355555443 222233333333344455666666655441 122122 268999988776433 33222
Q ss_pred EEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe
Q 007275 516 VAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 554 (609)
Q Consensus 516 I~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t 554 (609)
+ -.+-+|++....+|+-.+-.=+.+|++.|+..++|.-
T Consensus 178 V-Y~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYLGY 215 (253)
T COG2935 178 V-YTFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYLGY 215 (253)
T ss_pred E-EEEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3 2344999999999999999999999999999999954
No 217
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=40.80 E-value=87 Score=34.32 Aligned_cols=70 Identities=16% Similarity=0.066 Sum_probs=43.4
Q ss_pred CCCCCCCCchhHHHHHHHHhhhhHHhhcCCeEEEEeCCc--------ccCCCChHHHHHHHHH-HHhCCCeEEEEECCh
Q 007275 71 VEETYNPVEDEQFVKWFREAWPYLWAHRGGTFVVIISGE--------IVSSPYLDPILKDIAF-LHHLGIRFVLVPGTH 140 (609)
Q Consensus 71 ~~~~g~~~~~~~~~~~~r~a~pyi~~~~~k~iVIKlGGs--------vl~~~~l~~l~~~Ia~-L~~~G~~vVLVhGgG 140 (609)
..|-|-..+.++.+..+.+.+..-+.+.|++++|--|+. .|++..--.+-..|+. +...|.+|+++||.+
T Consensus 157 ~~g~g~~~~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~ 235 (390)
T TIGR00521 157 DEGKGRLAEPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPV 235 (390)
T ss_pred cccCCCCCCHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCC
Confidence 334455667777777766655332347889988876654 2333332234444443 677899999999874
No 218
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=39.21 E-value=1.1e+02 Score=31.50 Aligned_cols=101 Identities=21% Similarity=0.150 Sum_probs=60.9
Q ss_pred ccCCcCCHHHHHHHHhhhHhhccCccCC-HH---HHHhhc---CeEEEEEECCEEEEEEEEEEecCCCeEEEE--EEEEc
Q 007275 452 RTAKVTDLSGIKQIIQPLVESGALVRRT-DE---ELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVA--AIGVS 522 (609)
Q Consensus 452 R~a~~~D~~~I~~L~~~~~~~~~~~~~~-~e---~l~~~i---~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~--~iaV~ 522 (609)
+++.+=.-++|.+++.++....+..... .+ ++...+ -...|+.-||+++|+=.++........+++ .-.+|
T Consensus 130 ~~v~~~S~~Ela~iY~~Lf~~Rwg~~~~~~~~l~e~f~~Lr~~~fG~vL~l~~~P~Aiqlv~k~es~~wv~~D~iNgG~D 209 (264)
T PF07395_consen 130 RPVSEFSPEELADIYIDLFQKRWGFRCYGKEHLAEFFSELRHMIFGSVLFLNGQPCAIQLVYKVESPKWVYFDYINGGYD 209 (264)
T ss_pred EEHHHCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhHHhheeeEEEECCcceEEEEEEEecCCCeEEEecccCccC
Confidence 3333334445555555555555543322 22 222223 234677789999999877754444333333 56779
Q ss_pred ccCcCCcHHHHHH----HHHHHHHHHCCCCEEEE
Q 007275 523 PECRGQGQGDKLL----DYIEKKAASLGLDMLFL 552 (609)
Q Consensus 523 p~~RgqGiG~~LL----~~l~~~A~~~G~~~I~l 552 (609)
|+++.--.|+-|| +.+.++|+++|.+..+-
T Consensus 210 p~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~lrfS 243 (264)
T PF07395_consen 210 PECRDFSPGSILMWLNIQDAWEYCRAQGKPLRFS 243 (264)
T ss_pred cccccCCCccEEEEeeHHHHHHHHHHhCCceEEE
Confidence 9999999999885 66777777777665543
No 219
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=39.11 E-value=87 Score=33.00 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=43.9
Q ss_pred CEEEEEEEEEEec------CCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCE
Q 007275 497 GQIIACAALFPFF------KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDM 549 (609)
Q Consensus 497 g~IVG~~~l~~~~------~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~ 549 (609)
.++|||+...|.. .-.+.++.-++|+.+.|++-+.--|++.+.++|...|+.+
T Consensus 143 ~klVaFIsa~p~~v~vRgK~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~~~iw~ 201 (451)
T COG5092 143 QKLVAFISAKPHLVSVRGKRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRANVDGIWR 201 (451)
T ss_pred ceeEEEEecceeEEEEcccccccceEEEEEEehhhhhCccchHHHHHHHHhhhhhhhHH
Confidence 4899999876631 1257899999999999999999999999999998776643
No 220
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=38.99 E-value=98 Score=32.66 Aligned_cols=65 Identities=18% Similarity=0.151 Sum_probs=43.3
Q ss_pred chhHHHHHHHHhh-hhHHhhcCCeEEEEeCCcccCCCC----------hHHHHHHHHHHHh-CCCeEEEEECChHHH
Q 007275 79 EDEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY----------LDPILKDIAFLHH-LGIRFVLVPGTHVQI 143 (609)
Q Consensus 79 ~~~~~~~~~r~a~-pyi~~~~~k~iVIKlGGsvl~~~~----------l~~l~~~Ia~L~~-~G~~vVLVhGgG~~i 143 (609)
....|+..|++.+ |-+.+|+-..|||-.|-.+...+. +..+.+.|..+.. ...++|+|.+||-..
T Consensus 220 ~d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~ 296 (311)
T PF00850_consen 220 GDDEYLEAFEEILLPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNP 296 (311)
T ss_dssp BHHHHHHHHHHHHHHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSH
T ss_pred chHHHHHHHhhccccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCCh
Confidence 4678999999987 889999999999999998886532 2344444444322 122899999997443
No 221
>PTZ00346 histone deacetylase; Provisional
Probab=35.25 E-value=1.4e+02 Score=33.22 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=47.9
Q ss_pred chhHHHHHHHHhh-hhHHhhcCCeEEEEeCCcccCCCC-------hHHHHHHHHHHHhCCCeEEEEECChH
Q 007275 79 EDEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHV 141 (609)
Q Consensus 79 ~~~~~~~~~r~a~-pyi~~~~~k~iVIKlGGsvl~~~~-------l~~l~~~Ia~L~~~G~~vVLVhGgG~ 141 (609)
....|...|++.+ |-+..|+-..|||-.|-.+...+- .+.+.+-+..+.+.+.++++|-|||-
T Consensus 248 ~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGGY 318 (429)
T PTZ00346 248 TDFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGGY 318 (429)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCcC
Confidence 4678999999865 778999999999999998886533 23444444456667889999988864
No 222
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=34.02 E-value=1.8e+02 Score=27.59 Aligned_cols=47 Identities=15% Similarity=0.059 Sum_probs=34.7
Q ss_pred HHhhcCCeEEEEeCCcccCCCC---hHHHHHHHHHHHhCCCeEEEEECCh
Q 007275 94 LWAHRGGTFVVIISGEIVSSPY---LDPILKDIAFLHHLGIRFVLVPGTH 140 (609)
Q Consensus 94 i~~~~~k~iVIKlGGsvl~~~~---l~~l~~~Ia~L~~~G~~vVLVhGgG 140 (609)
+.++.-+.+|+-+.|.....+. +..+.+-|..|++.|++++|++++.
T Consensus 20 ~~~~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~ 69 (170)
T TIGR01668 20 LKKVGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVSNNA 69 (170)
T ss_pred HHHCCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHcCCEEEEEeCCc
Confidence 3444447788889887775433 4667777888999999999999874
No 223
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=31.42 E-value=1.3e+02 Score=37.53 Aligned_cols=59 Identities=20% Similarity=0.328 Sum_probs=47.0
Q ss_pred EECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe
Q 007275 494 EREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 554 (609)
Q Consensus 494 ~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t 554 (609)
+.||+|+||+.+.|.. .+.+.++-+--+|+. =.|+-..|+..+..++++.|++.+.+.-
T Consensus 427 d~~G~i~af~s~~p~~-~~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg~ 485 (1094)
T PRK02983 427 DADGQVVALLSFVPWG-RRGLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLNF 485 (1094)
T ss_pred CCCCeEEEEEEEeeeC-CCCEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEech
Confidence 3479999999999854 344666555556665 6899999999999999999999988854
No 224
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=29.90 E-value=2.1e+02 Score=31.16 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=56.5
Q ss_pred CeEEEEEECCEEEEEEEEEEecC--C------------------Ce--E---------EEEEEEEcccCcCCcHHHHHHH
Q 007275 488 DSFYVVEREGQIIACAALFPFFK--E------------------KC--G---------EVAAIGVSPECRGQGQGDKLLD 536 (609)
Q Consensus 488 ~~~~V~~~dg~IVG~~~l~~~~~--~------------------~~--~---------eI~~iaV~p~~RgqGiG~~LL~ 536 (609)
-..+++.+++++||.+-++-... + .. . .=.++-++|......+...|++
T Consensus 44 p~hl~~~~~~~lvaa~P~YlK~hS~GEyvFD~~Wa~a~~r~g~~YYPKlv~avPfTPv~G~R~l~~~~~~~~~~~~~L~~ 123 (370)
T PF04339_consen 44 PRHLTLRDGGRLVAAAPLYLKSHSYGEYVFDWAWADAYQRAGLRYYPKLVGAVPFTPVTGPRLLIAPGADRAALRAALLQ 123 (370)
T ss_pred ceEEEEEECCEEEEEeeeeeecccCcceehhHHHHHHHHHhccccCcceEeeeCCCCCcccceeECCCCCHHHHHHHHHH
Confidence 35677888899999988763210 0 00 0 0016778888888889999999
Q ss_pred HHHHHHHHCCCCEEEEE-e-HHHHHHHHHCCCeEe
Q 007275 537 YIEKKAASLGLDMLFLL-T-TRTADWFKSRGFREC 569 (609)
Q Consensus 537 ~l~~~A~~~G~~~I~l~-t-~~a~~fYek~GF~~~ 569 (609)
.+.+.|++.|+..+-+. + ..-....+..||...
T Consensus 124 ~~~~~a~~~~~Ss~h~lF~~~~~~~~l~~~G~~~r 158 (370)
T PF04339_consen 124 ALEQLAEENGLSSWHILFPDEEDAAALEEAGFLSR 158 (370)
T ss_pred HHHHHHHHcCCCcceeecCCHHHHHHHHhCCCcee
Confidence 99999999988765443 2 234556677888754
No 225
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=29.71 E-value=1.8e+02 Score=30.72 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=38.2
Q ss_pred CeEEEEeCCcccCCCC--hHHHHHHHHHHHhCCCeEEEEECCh-HHHhHHHHHcCC
Q 007275 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGH 152 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~--l~~l~~~Ia~L~~~G~~vVLVhGgG-~~i~~~l~~~g~ 152 (609)
|.|+.=+.|.+|.... .+...+.|..|++.|+.||+.+|-- ..+..+++++++
T Consensus 2 KLIftDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl 57 (302)
T PRK12702 2 RLVLSSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRL 57 (302)
T ss_pred cEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence 6788889999997543 4667778889999999999998862 223334444444
No 226
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=29.44 E-value=2.3e+02 Score=24.83 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=43.6
Q ss_pred EECCEEEEEEEEEEecCCCeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEe---HHHHHHH
Q 007275 494 EREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWF 561 (609)
Q Consensus 494 ~~dg~IVG~~~l~~~~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t---~~a~~fY 561 (609)
..++..-|++.+.+ .....++|+.++|.+.-++.|+++.+.+.+.+. .+.++..+ .+...||
T Consensus 15 y~de~y~~~AIvt~-~~~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d-----~~~L~Wrsr~~n~~n~Wy 79 (98)
T cd03173 15 YADEPLEGVAIVTY-EGNSIPYLDKFAVSDHLWLNNVTDNIFNLIRKD-----FPSLLWRVRENDANLKWY 79 (98)
T ss_pred EEcCCccEEEEEec-CCCCCEEEEEEEEcccccccCHHHHHHHHHHhh-----CCeeEEEeCCCCCccceE
Confidence 33444555555552 234688999999999999999999999988776 33555554 3456666
No 227
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=29.21 E-value=1.6e+02 Score=28.68 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=38.2
Q ss_pred EEEEeCCcccCCCC--hHHHHHHHHHHHhCCCeEEEEECChHH-HhHHHHHcCCc
Q 007275 102 FVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (609)
Q Consensus 102 iVIKlGGsvl~~~~--l~~l~~~Ia~L~~~G~~vVLVhGgG~~-i~~~l~~~g~~ 153 (609)
|+.=+.|.+++++. .....+.|..|++.|+++++++|-.+. +...++.+++.
T Consensus 2 i~~DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 56668898887644 455678888899999999999997543 45556666654
No 228
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=28.93 E-value=3.2e+02 Score=23.38 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=41.8
Q ss_pred hhHHhhcCCeEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHHHcCCcc
Q 007275 92 PYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA 154 (609)
Q Consensus 92 pyi~~~~~k~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~~~g~~~ 154 (609)
..+.+...+.+|+-+.+-..-|.. +..+.+-+..++..|.+++|+ |-.|++.+.++..|+..
T Consensus 34 ~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~-g~~~~v~~~l~~~gl~~ 96 (109)
T cd07041 34 EAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILT-GIRPEVAQTLVELGIDL 96 (109)
T ss_pred HHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEE-eCCHHHHHHHHHhCCCh
Confidence 334433456899888765544322 566666666677889886665 55688999999888864
No 229
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=28.90 E-value=1.2e+02 Score=28.88 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=29.9
Q ss_pred HHHHHHHHHHCCCCEEEEEe-----H---HHHHHHHHCCCeEeee
Q 007275 535 LDYIEKKAASLGLDMLFLLT-----T---RTADWFKSRGFRECSI 571 (609)
Q Consensus 535 L~~l~~~A~~~G~~~I~l~t-----~---~a~~fYek~GF~~~~~ 571 (609)
++.++++|+++|+++|-+.. . .-.++++..||++.+.
T Consensus 43 veEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV 87 (157)
T PF08901_consen 43 VEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSV 87 (157)
T ss_pred HHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEE
Confidence 67888999999999998865 1 2357789999998764
No 230
>PTZ00174 phosphomannomutase; Provisional
Probab=28.62 E-value=94 Score=31.38 Aligned_cols=40 Identities=15% Similarity=0.314 Sum_probs=33.5
Q ss_pred CeEEEEeCCcccCCCC-h-HHHHHHHHHHHhCCCeEEEEECC
Q 007275 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGT 139 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-l-~~l~~~Ia~L~~~G~~vVLVhGg 139 (609)
|.|+.=+.|.++.++. + +...+.|..+++.|+++||..|-
T Consensus 6 klia~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTGR 47 (247)
T PTZ00174 6 TILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGGS 47 (247)
T ss_pred eEEEEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 6788889999998754 3 56778888999999999999886
No 231
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=28.59 E-value=2.4e+02 Score=28.90 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=40.6
Q ss_pred cCeEEEEEECCEEEEEEEEEEe---------------------------cCCCeEEEEEEEEcccCcCCcHHHHHHHHHH
Q 007275 487 LDSFYVVEREGQIIACAALFPF---------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIE 539 (609)
Q Consensus 487 i~~~~V~~~dg~IVG~~~l~~~---------------------------~~~~~~eI~~iaV~p~~RgqGiG~~LL~~l~ 539 (609)
...|+++.....+|||....|. +++..+-|.++-|.+..|++|+++.|++.+.
T Consensus 130 ~k~~lFIS~rk~~VGcLvaE~Is~a~~~i~~~~~~~~~~s~~~~~~s~~~~~~~~GIsRIWV~s~~Rr~gIAs~lldva~ 209 (257)
T KOG3014|consen 130 IKTFLFISVRKIVVGCLVAEPISQAFRVIESPGVTDSYDSQKAWQNSPLPEPAICGISRIWVSSLRRRKGIASLLLDVAR 209 (257)
T ss_pred eeEEEEEEecceeeeEEEehhhhhhhhhccCcCcccchhhHHHhccCCCCCCcEeeeEEEEeehhhhhhhhHHHHHHHHH
Confidence 3456666666669998775431 0122345789999999999999999999887
Q ss_pred HHHH
Q 007275 540 KKAA 543 (609)
Q Consensus 540 ~~A~ 543 (609)
..-.
T Consensus 210 ~~~~ 213 (257)
T KOG3014|consen 210 CNFV 213 (257)
T ss_pred Hhhh
Confidence 7543
No 232
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=28.32 E-value=1.5e+02 Score=29.88 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=44.0
Q ss_pred CeEEEEeCCcccCCCC--hHHHHHHHHHHHhCCCeEEEEECChH-HHhHHHHHcCCcc
Q 007275 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHEA 154 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~--l~~l~~~Ia~L~~~G~~vVLVhGgG~-~i~~~l~~~g~~~ 154 (609)
|.+++=+.|.++.+.. -+...+.|..+++.|++++|+.|-.. .+...++.+++..
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 4 KLLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred eEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 5788889999997754 46677778889999999999999864 5667778888875
No 233
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=28.30 E-value=1.9e+02 Score=31.47 Aligned_cols=69 Identities=9% Similarity=0.203 Sum_probs=53.3
Q ss_pred hhHHHHHHHH-hhhhHHhhcCCeEEEEeCCcccCCCC-------hHHHHHHHHHHHhCCCeEEEEECChHHHhHHHH
Q 007275 80 DEQFVKWFRE-AWPYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLS 148 (609)
Q Consensus 80 ~~~~~~~~r~-a~pyi~~~~~k~iVIKlGGsvl~~~~-------l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~~~l~ 148 (609)
++.+-..|+. ..|-+..|+-.-||+..|+..|..+. ++...+-+...++.+..+.+|=|||-.+....+
T Consensus 233 D~sy~~if~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVAR 309 (425)
T KOG1342|consen 233 DESYESIFKPIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVAR 309 (425)
T ss_pred cHHHHHHHHHHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHH
Confidence 6678888887 44778899999999999999997654 467788888888889887777777765554433
No 234
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=28.25 E-value=2.7e+02 Score=28.36 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHhCCCeEEEEECChHHHh-------HHHHHcCCcccccCC
Q 007275 116 LDPILKDIAFLHHLGIRFVLVPGTHVQID-------KLLSERGHEAKYLGR 159 (609)
Q Consensus 116 l~~l~~~Ia~L~~~G~~vVLVhGgG~~i~-------~~l~~~g~~~~~~~g 159 (609)
++++++-+...++.|..|+=+|+|-|.+= ..|+++|++-+.+.|
T Consensus 61 LeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPG 111 (254)
T COG2875 61 LEEIIDLMVDAVREGKDVVRLHSGDPSIYGALAEQMRELEALGIPYEVVPG 111 (254)
T ss_pred HHHHHHHHHHHHHcCCeEEEeecCChhHHHHHHHHHHHHHHcCCCeEEeCC
Confidence 67888888888899999999999987641 125677887665544
No 235
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=28.14 E-value=1.6e+02 Score=30.00 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=41.5
Q ss_pred CCeEEEEeCCcccCCCC--hHHHHHHHHHHHhCCCeEEEEECCh-HHHhHHHHHcCCc
Q 007275 99 GGTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHE 153 (609)
Q Consensus 99 ~k~iVIKlGGsvl~~~~--l~~l~~~Ia~L~~~G~~vVLVhGgG-~~i~~~l~~~g~~ 153 (609)
-|.++.=+.|.++.++. .....+.|..|++.|++++|+.|-. ..+...++.+++.
T Consensus 4 ~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred ceEEEEcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 36788889999997433 5666777888999999999999864 3455666777765
No 236
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=27.96 E-value=1.8e+02 Score=28.47 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=40.8
Q ss_pred CeEEEEeCCcccCCCC-h-HHHHHHHHHHHhCCCeEEEEECChHH-HhHHHHHcCCc
Q 007275 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-l-~~l~~~Ia~L~~~G~~vVLVhGgG~~-i~~~l~~~g~~ 153 (609)
|.++.=+.|.++.++. + +...+.|..|++.|++++++.|=... +...+..+++.
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 4 KAIAIDIDGTITDKDRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred eEEEEecCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 5677789999997644 3 56778888899999999999987543 44556667665
No 237
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=26.88 E-value=2.1e+02 Score=31.50 Aligned_cols=71 Identities=14% Similarity=0.022 Sum_probs=43.6
Q ss_pred CCCCCCCCCCchhHHHHHHHHhhhhHHhhcCCeEEEEeCCcc--------cCCCChHHHHHHHHH-HHhCCCeEEEEECC
Q 007275 69 GNVEETYNPVEDEQFVKWFREAWPYLWAHRGGTFVVIISGEI--------VSSPYLDPILKDIAF-LHHLGIRFVLVPGT 139 (609)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~~r~a~pyi~~~~~k~iVIKlGGsv--------l~~~~l~~l~~~Ia~-L~~~G~~vVLVhGg 139 (609)
-+..|-|-.++.++.+..+.+.+.. +.+.|++++|--|+.. |++..-..+-..|+. +...|.+|++++|.
T Consensus 159 ~~~~g~gr~~~~~~I~~~~~~~~~~-~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 159 CGDVGPGRMAEPEEIVAAAERALSP-KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred CCCcCCCCCCCHHHHHHHHHHHhhh-cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 3444556667778877777766643 4567888887655432 233222223344443 56789999999986
Q ss_pred h
Q 007275 140 H 140 (609)
Q Consensus 140 G 140 (609)
.
T Consensus 238 ~ 238 (399)
T PRK05579 238 V 238 (399)
T ss_pred c
Confidence 4
No 238
>PLN02645 phosphoglycolate phosphatase
Probab=26.73 E-value=1.5e+02 Score=31.20 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=42.7
Q ss_pred CeEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECCh----HHHhHHHHHcCCc
Q 007275 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTH----VQIDKLLSERGHE 153 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG----~~i~~~l~~~g~~ 153 (609)
+.|++=+.|-++.... +....+.|..|++.|++++++.+++ .++.+.++.+|++
T Consensus 29 ~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~ 87 (311)
T PLN02645 29 ETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN 87 (311)
T ss_pred CEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 6899999998887644 6778888989999999999999976 3444455677775
No 239
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=26.50 E-value=1.9e+02 Score=29.14 Aligned_cols=54 Identities=17% Similarity=0.312 Sum_probs=41.1
Q ss_pred CeEEEEeCCcccCCCC--hHHHHHHHHHHHhCCCeEEEEECChHH-HhHHHHHcCCc
Q 007275 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~--l~~l~~~Ia~L~~~G~~vVLVhGgG~~-i~~~l~~~g~~ 153 (609)
|.|+.=+.|.++.++. -.+..+.|..+++.|++++|..|=... +...++.+++.
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 4 RVIALDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred cEEEEeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 6788889999997654 356778899999999999999886443 44556666654
No 240
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=26.18 E-value=2.8e+02 Score=29.21 Aligned_cols=93 Identities=15% Similarity=0.048 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhHhhccCccC---CHHHHHhh---c---CeEEEEEECCEEEEEEEEEEecCCCeEEEE--EEEEcccCcC
Q 007275 459 LSGIKQIIQPLVESGALVRR---TDEELLKA---L---DSFYVVEREGQIIACAALFPFFKEKCGEVA--AIGVSPECRG 527 (609)
Q Consensus 459 ~~~I~~L~~~~~~~~~~~~~---~~e~l~~~---i---~~~~V~~~dg~IVG~~~l~~~~~~~~~eI~--~iaV~p~~Rg 527 (609)
-++|..++.++.+..+.... ..+.+.+- + -...|+..||+++|+=.+..........++ .-.+||++..
T Consensus 165 ~~Ela~iY~~Lf~~Rwg~~~~~~~~~~l~e~f~~Lr~l~fG~VLfl~~~PcA~qlv~k~eSp~wi~~D~iNgG~Dpe~~~ 244 (298)
T PRK15312 165 SDELTHIFIELFRSRFGNTLSCYPADNLANFFSQLRHLLFGHILYIEGIPCAFDIVLKSESQMNVYFDVPNGAVKNECMP 244 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHhHHhheeeEEEECCcceEEEEEEEecCCCcEEEecccCccCccccc
Confidence 34555555565555554222 23333222 2 234677789999999877754433333322 5678999999
Q ss_pred CcHHHHHH----HHHHHHHHHCCCCEEE
Q 007275 528 QGQGDKLL----DYIEKKAASLGLDMLF 551 (609)
Q Consensus 528 qGiG~~LL----~~l~~~A~~~G~~~I~ 551 (609)
--.|+-|| +.+.++|++++.+..+
T Consensus 245 ~spGSIL~WlNi~~A~~~~~~~~K~lrf 272 (298)
T PRK15312 245 LSPGSILMWLNISRARHYCQERQKKLIF 272 (298)
T ss_pred CCCccEEEEecHHHHHHHHHhcCCcEEE
Confidence 98888875 5566666666655443
No 241
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=25.98 E-value=2e+02 Score=25.56 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=34.2
Q ss_pred eEEEEeCCcccCC----------CChHHHHHHHHHHHhCCCeEEEEECCh---------HHHhHHHHHcCCc
Q 007275 101 TFVVIISGEIVSS----------PYLDPILKDIAFLHHLGIRFVLVPGTH---------VQIDKLLSERGHE 153 (609)
Q Consensus 101 ~iVIKlGGsvl~~----------~~l~~l~~~Ia~L~~~G~~vVLVhGgG---------~~i~~~l~~~g~~ 153 (609)
.+++=++|.++.. .-...+.+-|..|++.|++++|++++. ..+...++.+++.
T Consensus 2 ~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 2 GVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred EEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 4555566666531 013556677778889999999998874 2355566666664
No 242
>PHA02769 hypothetical protein; Provisional
Probab=25.76 E-value=51 Score=29.52 Aligned_cols=44 Identities=23% Similarity=0.502 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHH---HHCCCCEEEEEe--HHHHHHHHHCCCeEeeeec
Q 007275 530 QGDKLLDYIEKKA---ASLGLDMLFLLT--TRTADWFKSRGFRECSIEM 573 (609)
Q Consensus 530 iG~~LL~~l~~~A---~~~G~~~I~l~t--~~a~~fYek~GF~~~~~~~ 573 (609)
-|..|+..+...+ ++.|+..++..- ..+..+|.|.||+.++...
T Consensus 93 pgd~lvnfl~~l~~k~~~dg~evlwtlgfpdhsnaly~kagfk~vg~ts 141 (154)
T PHA02769 93 PGDHLVNFLNDLAEKLKKDGFEVLWTLGFPDHSNALYKKAGFKLVGQTS 141 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCCeEEEEEecCCCcchhHHhhhhhhHhcccc
Confidence 3677777666655 456777766544 4789999999999988663
No 243
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=24.57 E-value=1.2e+02 Score=30.77 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=39.3
Q ss_pred CeEEEEeCCcccCCCC--hHHHHHHHHHHHhCCCeEEEEECChHH-HhHHHHHcCCc
Q 007275 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~--l~~l~~~Ia~L~~~G~~vVLVhGgG~~-i~~~l~~~g~~ 153 (609)
|.++.=+.|.++.++. -+...+.|..|++.|++++|+.|=... +...++++++.
T Consensus 3 kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 3 RLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD 59 (272)
T ss_pred cEEEEeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 6788889999997644 366778899999999999999886432 33444555543
No 244
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=24.44 E-value=1.1e+02 Score=30.30 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCeEEEEECChH-HHhHHHHHcCCcc
Q 007275 119 ILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHEA 154 (609)
Q Consensus 119 l~~~Ia~L~~~G~~vVLVhGgG~-~i~~~l~~~g~~~ 154 (609)
..+-++.+++.|++++||+||-. .+..+.+.+|+..
T Consensus 82 a~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~ 118 (212)
T COG0560 82 AEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY 118 (212)
T ss_pred HHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch
Confidence 34445567889999999999966 4677777888764
No 245
>PRK10976 putative hydrolase; Provisional
Probab=24.20 E-value=1.2e+02 Score=30.50 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=39.9
Q ss_pred CeEEEEeCCcccCCCC-h-HHHHHHHHHHHhCCCeEEEEECChHH-HhHHHHHcCCc
Q 007275 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-l-~~l~~~Ia~L~~~G~~vVLVhGgG~~-i~~~l~~~g~~ 153 (609)
|.+++=+.|.++.++. + +...+.|..|++.|++++|..|=... +...++.+++.
T Consensus 3 kli~~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 3 QVVASDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred eEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 5788889999997644 3 56788888999999999999886433 33445566654
No 246
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=24.08 E-value=1.2e+02 Score=30.63 Aligned_cols=54 Identities=19% Similarity=0.291 Sum_probs=40.4
Q ss_pred CeEEEEeCCcccCCCC-h-HHHHHHHHHHHhCCCeEEEEECChHH-HhHHHHHcCCc
Q 007275 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-l-~~l~~~Ia~L~~~G~~vVLVhGgG~~-i~~~l~~~g~~ 153 (609)
|.+++=+.|.++.++. + +...+.|..|++.|++++|..|=... +...++.+++.
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 4 KLIAIDMDGTLLLPDHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred EEEEEecCCcCcCCCCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 5788889999997644 3 56778888999999999999886433 44455666654
No 247
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=23.82 E-value=1.9e+02 Score=29.28 Aligned_cols=54 Identities=9% Similarity=0.180 Sum_probs=39.5
Q ss_pred CeEEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECCh----HHHhHHHHHcCCc
Q 007275 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTH----VQIDKLLSERGHE 153 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG----~~i~~~l~~~g~~ 153 (609)
+.+++=+.|.++.... +....+.|..|++.|++++++.++. ..+...++.+|++
T Consensus 2 ~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred CEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 3577777787776544 5667788888999999999999854 3445556677765
No 248
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=23.57 E-value=1.7e+02 Score=29.81 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEeH-------HHHHHHHHCCCeEeeeec
Q 007275 531 GDKLLDYIEKKAASLGLDMLFLLTT-------RTADWFKSRGFRECSIEM 573 (609)
Q Consensus 531 G~~LL~~l~~~A~~~G~~~I~l~t~-------~a~~fYek~GF~~~~~~~ 573 (609)
...-...+.+-++..|+++|.+.|. +...||++.||+......
T Consensus 104 ~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~ 153 (239)
T TIGR02990 104 VVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTC 153 (239)
T ss_pred eeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeec
Confidence 3344556666778889999999882 568999999999886543
No 249
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=23.40 E-value=3.3e+02 Score=28.87 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=68.3
Q ss_pred ccccccCCcCCHHHHHHHHhhhHhh-ccCccCCHHHHHhhc-----------CeEEEEE-ECCEEEEEEEEEEecC----
Q 007275 448 YEGTRTAKVTDLSGIKQIIQPLVES-GALVRRTDEELLKAL-----------DSFYVVE-REGQIIACAALFPFFK---- 510 (609)
Q Consensus 448 ~~~IR~a~~~D~~~I~~L~~~~~~~-~~~~~~~~e~l~~~i-----------~~~~V~~-~dg~IVG~~~l~~~~~---- 510 (609)
...+|+++.+|++++.+|+.+.... .+....+.+++..+. ...||++ -||+|-+|..++..+.
T Consensus 258 t~GlR~~e~kD~~~v~~L~~~y~~Rfel~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p~gkItdFfsFyslp~t~i~ 337 (451)
T COG5092 258 TEGLRLAEEKDMEDVARLYLEYSRRFELYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEPNGKITDFFSFYSLPFTTIE 337 (451)
T ss_pred CcccchhhhhCHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccccccCceEEEEEEeCCCCccccceEEEeccceeec
Confidence 3568999999999999998764321 222334455555554 1224555 4799999998874321
Q ss_pred ------CCeEEEEEEEEcccCcCC------cH---HHHHHHHHHHHHHHCCCCEEEEEeH-HHHHHHHHCCCeEe
Q 007275 511 ------EKCGEVAAIGVSPECRGQ------GQ---GDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFREC 569 (609)
Q Consensus 511 ------~~~~eI~~iaV~p~~Rgq------Gi---G~~LL~~l~~~A~~~G~~~I~l~t~-~a~~fYek~GF~~~ 569 (609)
-..+++.-.+-+..+..- -+ -..|+..++-.|+..|+...-+.+. ...-|...++|-.-
T Consensus 338 n~kykdiq~gYLYYya~d~~~kd~~~~a~~a~~~r~~e~v~Da~ilak~~~~DVFNalt~~dN~lFL~dLkFg~G 412 (451)
T COG5092 338 NKKYKDIQGGYLYYYAGDDQFKDFDPKATKALKTRVAEMVGDAMILAKVEGCDVFNALTMMDNSLFLADLKFGCG 412 (451)
T ss_pred CccccccceeEEEEEccCccccccChHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhccchhHHHhcCccCC
Confidence 123455444444433221 01 2334444555667777765444442 33446677888654
No 250
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=23.24 E-value=2.9e+02 Score=31.17 Aligned_cols=70 Identities=10% Similarity=-0.042 Sum_probs=42.0
Q ss_pred CCCCCCCCCchhHHHHHHHHhhhh--HHhhcCCeEEEEeCCcc--------cCCCChHHHHHHHHH-HHhCCCeEEEEEC
Q 007275 70 NVEETYNPVEDEQFVKWFREAWPY--LWAHRGGTFVVIISGEI--------VSSPYLDPILKDIAF-LHHLGIRFVLVPG 138 (609)
Q Consensus 70 ~~~~~g~~~~~~~~~~~~r~a~py--i~~~~~k~iVIKlGGsv--------l~~~~l~~l~~~Ia~-L~~~G~~vVLVhG 138 (609)
|..|.|-..+.+..+..+...+.- -+.+.|++++|--|+.. |++..--+.-..|+. +...|.+|.+|||
T Consensus 225 g~~G~Grm~e~~~I~~~v~~~~~~~~~~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~G 304 (475)
T PRK13982 225 GEAGVGRMAEPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISG 304 (475)
T ss_pred CCcCCCCCCCHHHHHHHHHHHHhhccccccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeC
Confidence 344556666766666655544311 12378999999999864 222222233333443 5568999999997
Q ss_pred C
Q 007275 139 T 139 (609)
Q Consensus 139 g 139 (609)
-
T Consensus 305 p 305 (475)
T PRK13982 305 P 305 (475)
T ss_pred C
Confidence 5
No 251
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=23.17 E-value=2.3e+02 Score=28.90 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=39.6
Q ss_pred CeEEEEeCCcccCCCC-h-HHHHHHHHHHHhCCCeEEEEECChH-HHhHHHHHcCC
Q 007275 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGH 152 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-l-~~l~~~Ia~L~~~G~~vVLVhGgG~-~i~~~l~~~g~ 152 (609)
+.|+.=+.|.++.++. + +...+.|..|++.|+++||.+|-.. .+...++.+++
T Consensus 8 ~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~ 63 (271)
T PRK03669 8 LLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGL 63 (271)
T ss_pred eEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCC
Confidence 5677789999997644 3 5677889999999999999998743 23445556665
No 252
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=23.14 E-value=2.4e+02 Score=25.76 Aligned_cols=24 Identities=17% Similarity=0.175 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHhCCCeEEEEECC
Q 007275 116 LDPILKDIAFLHHLGIRFVLVPGT 139 (609)
Q Consensus 116 l~~l~~~Ia~L~~~G~~vVLVhGg 139 (609)
.+.+.+-|..|++.|++++|++++
T Consensus 29 ~~g~~~~l~~Lk~~g~~~~I~Sn~ 52 (147)
T TIGR01656 29 RPGAVPALLTLRAAGYTVVVVTNQ 52 (147)
T ss_pred cCChHHHHHHHHHCCCEEEEEeCC
Confidence 345677788899999999999876
No 253
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=21.83 E-value=6.8e+02 Score=23.61 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=63.9
Q ss_pred ccccCCcCCHHHHHHHHhhhHh---h---cc-------CccCCHHH--HHhhcCeEEEEE-ECCEEEEEEEEEEecCC--
Q 007275 450 GTRTAKVTDLSGIKQIIQPLVE---S---GA-------LVRRTDEE--LLKALDSFYVVE-REGQIIACAALFPFFKE-- 511 (609)
Q Consensus 450 ~IR~a~~~D~~~I~~L~~~~~~---~---~~-------~~~~~~e~--l~~~i~~~~V~~-~dg~IVG~~~l~~~~~~-- 511 (609)
.+|++++.|++.+..+-..... . .. ..+.+... +.....+.|+++ +++++.||+-....|.+
T Consensus 2 ~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrfy~RsgHSFvA~~e~~~~~GfvLAQaVWQGdr 81 (161)
T PF09390_consen 2 RYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRFYERSGHSFVAEDEGGELQGFVLAQAVWQGDR 81 (161)
T ss_dssp EEE---GGGHHHHHHC--------------------STTS---HHHHHHHHCCS--EEEE-ETTEEEEEEEEEEEE-SSS
T ss_pred cccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhhhhhccCCcEEEEccCCceeeeeehhHHhcCCC
Confidence 3789999999999887322111 0 11 11122222 223335667777 88999999977655543
Q ss_pred CeEEEEEEEEcccCcCCcHHHHHHHHHHHHHHHCCCCEEEEEeHH-HHHHHHHCCCeEee
Q 007275 512 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTR-TADWFKSRGFRECS 570 (609)
Q Consensus 512 ~~~eI~~iaV~p~~RgqGiG~~LL~~l~~~A~~~G~~~I~l~t~~-a~~fYek~GF~~~~ 570 (609)
....+..+.+.|. +....-.-||..+.+-|=.-++..+.+..++ ...--+..||...+
T Consensus 82 ptVlV~ri~~~~~-~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p~l~~A~~a~~~~~~~ 140 (161)
T PF09390_consen 82 PTVLVRRILLAPG-EPEEVYEGLLRAVVKSAYDAGVYEVHLHLDPELEAAARAEGFRLGG 140 (161)
T ss_dssp EEEEEEEE---EE-SSHHHHHHHHHHHHHHHHHTT-SEEEE---THHHHHHHHTT----S
T ss_pred ceEEEEEeecCCC-CcHHHHHHHHHHHHHhhhccceEEEEeeCCHHHHHHHhhcccccCC
Confidence 3456777777664 3457888899999999988899999887754 33445666776544
No 254
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=21.66 E-value=1.7e+02 Score=28.55 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=32.8
Q ss_pred CeEEEEeCCcccCCCC-h-HHHHHHHHHHHhCCCeEEEEECCh
Q 007275 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTH 140 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-l-~~l~~~Ia~L~~~G~~vVLVhGgG 140 (609)
|.++.=+.|.++.++. + +...+.|..|++.|++++|+.|-.
T Consensus 2 k~v~~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~ 44 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVTGNT 44 (215)
T ss_pred cEEEEecCCCcCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 4677789999997543 3 567788888999999999999863
No 255
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=20.89 E-value=2e+02 Score=26.20 Aligned_cols=40 Identities=13% Similarity=0.288 Sum_probs=30.3
Q ss_pred CeEEEEeCCcccCCCC--------hHHHHHHHHHHHhCCCeEEEEECC
Q 007275 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGT 139 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~--------l~~l~~~Ia~L~~~G~~vVLVhGg 139 (609)
|.|++=+.|.++.+.. .....+.|..|++.|+++|+++|=
T Consensus 2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR 49 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSR 49 (126)
T ss_pred CEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 6788889998886421 246677777788899998888775
No 256
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=20.89 E-value=41 Score=33.67 Aligned_cols=27 Identities=41% Similarity=0.487 Sum_probs=21.8
Q ss_pred Cccccccccccccceeeeeeccccccc
Q 007275 1 MATTHHSVSASATKTQLLFSSRVSNSL 27 (609)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (609)
|+.|--..|.|++|+|++|.|..|++.
T Consensus 1 m~Ata~~ts~sa~k~~~~~d~~~H~s~ 27 (328)
T KOG2960|consen 1 MSATATATSTSASKPQRLFDSQLHGSA 27 (328)
T ss_pred CCccceeccccccCcccchhhhhhhhh
Confidence 455566678899999999999999753
No 257
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=20.57 E-value=7.5e+02 Score=26.46 Aligned_cols=40 Identities=25% Similarity=0.479 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEECChHHH----hHHHHHcCCcccccCC
Q 007275 117 DPILKDIAFLHHLGIRFVLVPGTHVQI----DKLLSERGHEAKYLGR 159 (609)
Q Consensus 117 ~~l~~~Ia~L~~~G~~vVLVhGgG~~i----~~~l~~~g~~~~~~~g 159 (609)
+.+..+|. +.+-+.||+-||-.++ ...++.+|++-....|
T Consensus 65 es~~~eI~---~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG 108 (337)
T COG2247 65 ESVLDEII---ELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGG 108 (337)
T ss_pred HHHHHHHH---hhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecC
Confidence 34455554 4466788888986554 4457778887665554
No 258
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=20.29 E-value=1.6e+02 Score=29.18 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHhCCCeEEEEECC-hHHHhHHHHHcCCcc
Q 007275 116 LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEA 154 (609)
Q Consensus 116 l~~l~~~Ia~L~~~G~~vVLVhGg-G~~i~~~l~~~g~~~ 154 (609)
+++++ +.|++.|.+|.|++|| -+.|.....++|++.
T Consensus 93 i~eLv---~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 93 IRELV---SRLHARGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred HHHHH---HHHHHcCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 45554 4578899999999999 345677777888864
No 259
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=20.24 E-value=3.1e+02 Score=27.25 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=36.3
Q ss_pred EEEEeCCcccCCCC-hHHHHHHHHHHHhCCCeEEEEECCh-HHHhHHHHHcCCc
Q 007275 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHE 153 (609)
Q Consensus 102 iVIKlGGsvl~~~~-l~~l~~~Ia~L~~~G~~vVLVhGgG-~~i~~~l~~~g~~ 153 (609)
|+.=+.|.++.+.. .....+.|..|++.|+++|+++|-. ..+...++++++.
T Consensus 2 i~~DlDGTLl~~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 2 IFTDLDGTLLPPGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred EEEeCCCCCcCCCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 45567788886433 5667888888999999999998764 2344455566653
No 260
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=20.16 E-value=1.8e+02 Score=29.53 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=38.5
Q ss_pred CeEEEEeCCcccCCCC-----hHHHHHHHHHHHhCCCeEEEEECChH----HHhHHHHHcCCc
Q 007275 100 GTFVVIISGEIVSSPY-----LDPILKDIAFLHHLGIRFVLVPGTHV----QIDKLLSERGHE 153 (609)
Q Consensus 100 k~iVIKlGGsvl~~~~-----l~~l~~~Ia~L~~~G~~vVLVhGgG~----~i~~~l~~~g~~ 153 (609)
|.+++=+-|.++.... +....+.|..|++.|++++++.++.. ++...++.+|++
T Consensus 2 k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred CEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 3566666676665422 56778888889999999999998653 355567777764
No 261
>PRK14368 Maf-like protein; Provisional
Probab=20.05 E-value=3.9e+02 Score=26.27 Aligned_cols=89 Identities=19% Similarity=0.087 Sum_probs=44.3
Q ss_pred eeeccCccccccccccccccccccCCCCCCCCCCCchhHHHHHHHH--hhhhHHhhcCCe-----EEEEeCCcccCCCC-
Q 007275 44 GLCHHSIKNKERNLSKCKVFSEAMGGNVEETYNPVEDEQFVKWFRE--AWPYLWAHRGGT-----FVVIISGEIVSSPY- 115 (609)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~r~--a~pyi~~~~~k~-----iVIKlGGsvl~~~~- 115 (609)
.|++.||||+|.-..-.-.|...+..-.+..-....+.+++..+-+ |..-..++.+.. -||-++|.++..|.
T Consensus 8 ILAS~SprR~eLL~~~g~~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~vI~aDTvV~~~g~ilgKP~~ 87 (193)
T PRK14368 8 VLASASPRRSELLASAGIEFDVVPADIPEEPLPGEEPVDHVLRLAREKARAAAALAEGRFFIGADTIVVCDGEIMGKPKD 87 (193)
T ss_pred EEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEeCcEEEECCEEecCCCC
Confidence 5899999999864431112221222222211011124455555443 222223344442 23557888887665
Q ss_pred hHHHHHHHHHHHhCCCe
Q 007275 116 LDPILKDIAFLHHLGIR 132 (609)
Q Consensus 116 l~~l~~~Ia~L~~~G~~ 132 (609)
.++..+.|..|...-++
T Consensus 88 ~~eA~~~L~~lsG~~h~ 104 (193)
T PRK14368 88 EADAVRMLKKLSGVPHE 104 (193)
T ss_pred HHHHHHHHHHhCCCCcE
Confidence 66677777766544343
Done!