Query 007277
Match_columns 609
No_of_seqs 138 out of 220
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 21:23:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1525 Sister chromatid cohes 100.0 1.4E-51 3.1E-56 479.4 21.3 246 13-261 4-257 (1266)
2 KOG1525 Sister chromatid cohes 99.7 1.9E-17 4.2E-22 195.2 15.7 246 13-261 409-671 (1266)
3 KOG1992 Nuclear export recepto 89.8 3 6.5E-05 49.8 11.8 117 118-239 603-731 (960)
4 PF03378 CAS_CSE1: CAS/CSE pro 79.4 13 0.00027 41.6 10.2 137 80-228 45-194 (435)
5 PF01602 Adaptin_N: Adaptin N 78.9 31 0.00067 37.6 12.8 33 58-92 266-298 (526)
6 KOG0915 Uncharacterized conser 76.2 42 0.00092 43.0 14.0 165 28-202 989-1196(1702)
7 PTZ00429 beta-adaptin; Provisi 76.0 63 0.0014 38.8 15.1 146 59-230 256-401 (746)
8 PF02985 HEAT: HEAT repeat; I 73.7 1.7 3.6E-05 30.7 1.0 25 68-92 7-31 (31)
9 KOG1949 Uncharacterized conser 72.9 73 0.0016 38.4 14.1 149 22-207 205-374 (1005)
10 KOG1248 Uncharacterized conser 72.1 96 0.0021 39.0 15.4 195 28-239 200-396 (1176)
11 PF14500 MMS19_N: Dos2-interac 69.7 47 0.001 34.7 10.9 139 68-220 6-151 (262)
12 PF01602 Adaptin_N: Adaptin N 69.6 7.8 0.00017 42.2 5.4 118 67-203 120-241 (526)
13 KOG1241 Karyopherin (importin) 64.4 32 0.00069 41.3 9.1 45 67-111 557-605 (859)
14 KOG1248 Uncharacterized conser 62.2 1.7E+02 0.0037 37.0 14.8 160 72-240 708-875 (1176)
15 PF05918 API5: Apoptosis inhib 61.5 1.1E+02 0.0024 35.6 12.7 143 8-163 173-318 (556)
16 PF12717 Cnd1: non-SMC mitotic 58.8 1.1E+02 0.0024 29.5 10.5 78 70-164 72-159 (178)
17 PF12348 CLASP_N: CLASP N term 57.6 1.9E+02 0.0042 28.2 14.1 181 24-224 17-204 (228)
18 KOG0213 Splicing factor 3b, su 56.9 2E+02 0.0043 35.3 13.7 133 25-162 506-688 (1172)
19 KOG1060 Vesicle coat complex A 56.1 65 0.0014 39.1 9.8 137 74-237 282-432 (968)
20 PF03224 V-ATPase_H_N: V-ATPas 55.6 1.4E+02 0.003 31.3 11.4 123 28-166 27-157 (312)
21 PF12755 Vac14_Fab1_bd: Vacuol 50.3 51 0.0011 29.5 6.2 69 57-135 25-94 (97)
22 PF12719 Cnd3: Nuclear condens 47.5 2.6E+02 0.0056 29.2 11.9 174 63-245 67-289 (298)
23 KOG1488 Translational represso 46.9 94 0.002 35.9 9.0 102 144-255 273-382 (503)
24 PF13513 HEAT_EZ: HEAT-like re 46.7 32 0.00069 26.5 3.9 47 40-88 9-55 (55)
25 PF05327 RRN3: RNA polymerase 46.5 1.7E+02 0.0037 33.8 11.1 150 23-203 45-211 (563)
26 KOG1060 Vesicle coat complex A 45.7 3.6E+02 0.0079 33.2 13.6 155 55-238 318-474 (968)
27 KOG4256 Kinetochore component 44.6 2.1E+02 0.0046 36.2 11.6 94 66-170 499-618 (2209)
28 KOG2023 Nuclear transport rece 44.2 97 0.0021 37.2 8.7 111 129-243 580-712 (885)
29 cd07920 Pumilio Pumilio-family 42.8 2.6E+02 0.0056 28.7 10.9 19 100-118 70-88 (322)
30 PTZ00429 beta-adaptin; Provisi 41.9 7.2E+02 0.016 30.2 15.7 27 68-95 147-173 (746)
31 PF03224 V-ATPase_H_N: V-ATPas 41.7 1.1E+02 0.0025 32.0 8.2 112 55-185 146-269 (312)
32 PF12717 Cnd1: non-SMC mitotic 41.0 3.3E+02 0.0071 26.3 10.7 103 74-186 1-113 (178)
33 PF14911 MMS22L_C: S-phase gen 40.2 5.8E+02 0.012 28.6 14.2 123 23-165 223-347 (373)
34 smart00139 MyTH4 Domain in Myo 39.3 3.5E+02 0.0076 25.8 10.6 101 149-256 18-128 (144)
35 PF12348 CLASP_N: CLASP N term 39.1 2.7E+02 0.0059 27.1 9.9 89 102-201 50-138 (228)
36 KOG2171 Karyopherin (importin) 38.0 5.4E+02 0.012 32.6 13.9 158 67-237 86-288 (1075)
37 cd00020 ARM Armadillo/beta-cat 37.2 89 0.0019 26.3 5.5 66 68-139 14-80 (120)
38 PF12612 TFCD_C: Tubulin foldi 36.2 94 0.002 30.5 6.2 112 77-205 23-139 (193)
39 KOG2051 Nonsense-mediated mRNA 35.9 2.4E+02 0.0053 35.4 10.5 133 71-239 658-811 (1128)
40 PF11864 DUF3384: Domain of un 35.4 6.8E+02 0.015 28.1 13.7 111 121-237 147-260 (464)
41 cd04405 RhoGAP_BRCC3-like RhoG 33.5 2.5E+02 0.0054 29.6 8.9 106 103-208 105-226 (235)
42 PF11935 DUF3453: Domain of un 32.9 5.3E+02 0.012 26.4 11.2 172 51-255 35-210 (239)
43 COG5215 KAP95 Karyopherin (imp 32.9 5.7E+02 0.012 30.8 12.3 117 149-265 531-698 (858)
44 PF05997 Nop52: Nucleolar prot 32.9 3.1E+02 0.0068 27.8 9.5 162 33-203 19-194 (217)
45 cd00280 TRFH Telomeric Repeat 32.8 3E+02 0.0066 28.4 9.1 101 54-162 32-139 (200)
46 PF12074 DUF3554: Domain of un 32.7 6.2E+02 0.013 26.8 15.7 95 27-132 36-136 (339)
47 PF08767 CRM1_C: CRM1 C termin 32.3 6.5E+02 0.014 26.9 13.2 81 28-115 89-175 (319)
48 PF12460 MMS19_C: RNAPII trans 32.3 7.1E+02 0.015 27.3 13.3 162 74-239 56-238 (415)
49 PF07637 PSD5: Protein of unkn 31.7 1.1E+02 0.0024 25.3 5.0 59 10-72 3-61 (64)
50 PF00514 Arm: Armadillo/beta-c 31.4 26 0.00056 25.8 1.1 23 68-90 19-41 (41)
51 PF08568 Kinetochor_Ybp2: Unch 31.4 6.3E+02 0.014 29.5 12.8 124 26-185 36-176 (633)
52 cd07958 Anticodon_Ia_Leu_BEm A 30.9 1.3E+02 0.0028 25.7 5.6 29 77-105 87-115 (117)
53 smart00288 VHS Domain present 30.1 1.3E+02 0.0028 28.1 5.8 67 165-232 10-76 (133)
54 PF04118 Dopey_N: Dopey, N-ter 29.6 3.4E+02 0.0073 29.4 9.5 41 97-138 127-168 (307)
55 KOG1949 Uncharacterized conser 27.2 5.4E+02 0.012 31.6 11.1 152 63-224 173-369 (1005)
56 cd00197 VHS_ENTH_ANTH VHS, ENT 26.8 1.3E+02 0.0027 26.9 4.9 59 174-233 19-77 (115)
57 cd07961 Anticodon_Ia_Ile_ABEc 26.5 37 0.00081 32.5 1.6 27 79-105 112-138 (183)
58 KOG4338 Predicted lipoprotein 26.1 4.6E+02 0.0099 34.6 10.9 173 8-254 319-493 (1680)
59 PF14911 MMS22L_C: S-phase gen 25.9 7.9E+02 0.017 27.6 11.6 157 101-260 139-334 (373)
60 PF10508 Proteasom_PSMB: Prote 25.9 7.4E+02 0.016 28.1 11.8 115 68-189 84-213 (503)
61 COG5215 KAP95 Karyopherin (imp 25.6 9.6E+02 0.021 29.0 12.5 222 33-261 472-735 (858)
62 PF05327 RRN3: RNA polymerase 24.5 2.6E+02 0.0057 32.3 8.1 10 249-258 206-215 (563)
63 PF14868 DUF4487: Domain of un 24.3 7.8E+02 0.017 29.0 11.7 122 103-241 378-509 (559)
64 smart00188 IL10 Interleukin-10 24.0 42 0.00092 32.4 1.4 50 34-92 4-54 (137)
65 KOG0211 Protein phosphatase 2A 24.0 6.5E+02 0.014 30.8 11.3 136 70-225 527-666 (759)
66 PF08558 TRF: Telomere repeat 23.3 2.9E+02 0.0063 28.7 7.4 112 92-207 30-157 (238)
67 KOG1824 TATA-binding protein-i 23.2 3.2E+02 0.007 34.3 8.6 144 76-249 947-1120(1233)
68 cd03568 VHS_STAM VHS domain fa 23.0 1.8E+02 0.0039 27.9 5.4 68 164-232 9-76 (144)
69 PLN02959 aminoacyl-tRNA ligase 22.8 1E+02 0.0022 38.6 4.6 29 77-105 847-875 (1084)
70 PF04147 Nop14: Nop14-like fam 22.3 2.2E+02 0.0047 34.7 7.2 45 186-230 483-527 (840)
71 KOG0686 COP9 signalosome, subu 22.3 45 0.00098 37.7 1.4 116 75-204 269-396 (466)
72 cd00256 VATPase_H VATPase_H, r 22.2 1.2E+03 0.026 26.6 14.3 188 35-252 118-325 (429)
73 COG5231 VMA13 Vacuolar H+-ATPa 22.1 3.6E+02 0.0079 30.2 8.0 111 68-195 156-277 (432)
74 KOG2022 Nuclear transport rece 22.1 1.2E+03 0.026 29.4 12.8 187 56-261 702-923 (982)
75 COG5218 YCG1 Chromosome conden 21.7 1.5E+03 0.033 27.6 16.2 86 127-217 66-152 (885)
76 PF09450 DUF2019: Domain of un 21.0 1E+02 0.0022 28.7 3.2 44 27-83 26-69 (106)
77 PF05004 IFRD: Interferon-rela 20.7 1.4E+02 0.0031 31.8 4.7 41 58-100 227-270 (309)
78 KOG2022 Nuclear transport rece 20.6 1.1E+03 0.023 29.8 12.0 92 146-239 499-593 (982)
79 KOG1991 Nuclear transport rece 20.5 7.4E+02 0.016 31.2 10.8 55 73-137 435-491 (1010)
80 PF10395 Utp8: Utp8 family; I 20.4 6E+02 0.013 30.6 9.9 57 101-157 460-532 (670)
81 PF00790 VHS: VHS domain; Int 20.3 2.6E+02 0.0056 26.1 5.8 69 163-232 13-81 (140)
82 PF02565 RecO_C: Recombination 20.1 1.8E+02 0.0038 25.0 4.4 58 77-138 5-63 (118)
83 KOG0301 Phospholipase A2-activ 20.1 1.2E+03 0.026 28.4 12.1 91 27-126 539-648 (745)
No 1
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.4e-51 Score=479.36 Aligned_cols=246 Identities=34% Similarity=0.545 Sum_probs=234.3
Q ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhc
Q 007277 13 QLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRIT 92 (609)
Q Consensus 13 ~l~~~G~kLis~pis~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIy 92 (609)
+.-+-|++++.++++++|||+||++|+++|++++|++.+ .++|.|++.+|+++.||+|+|+|||+|||||++||||||
T Consensus 4 ~~~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~~~--~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~ 81 (1266)
T KOG1525|consen 4 QFYPPGCLTSLNPISKDELLKRLKKLANCLASLDQDNLD--LASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIY 81 (1266)
T ss_pred cccCCCCccccCcccHHHHHHHHHHHHHHHhhcccCchh--HHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHh
Confidence 445679999999999999999999999999999999966 999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhH
Q 007277 93 APDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFV 172 (609)
Q Consensus 93 APDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV 172 (609)
||||||++.||+|||+||++||.||.|+.+|||.|||||||+||+||.|++|.|.+|++|+.+||++||+++|.+||.+|
T Consensus 82 aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v 161 (1266)
T KOG1525|consen 82 APEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKV 161 (1266)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHH
Confidence 99999999999999999999999999999999999999999999999777777778999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhhHhHHHHHHHHhcC-------CC-Cc
Q 007277 173 FAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRG-------IA-LD 244 (609)
Q Consensus 173 ~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~I~q~l~s~G-------~~-ld 244 (609)
+. |.+||+.+|.|.+.||.++|++||.+|+++++++.+.|++||..+|..|++.+.+.+++||++.- +. ..
T Consensus 162 ~~-~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~ 240 (1266)
T KOG1525|consen 162 FN-MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKI 240 (1266)
T ss_pred HH-HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhh
Confidence 99 99999999999999999999999999999999999999999999999999999999999999762 22 47
Q ss_pred chHHHHHHHhccCCCCC
Q 007277 245 DYAEIVACICGSDDENP 261 (609)
Q Consensus 245 ~Y~~iv~sIcq~~s~~~ 261 (609)
.||++|..+..+++..+
T Consensus 241 ~~he~i~~L~~~~p~ll 257 (1266)
T KOG1525|consen 241 KYHELILELWRIAPQLL 257 (1266)
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 89999999999988776
No 2
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.9e-17 Score=195.16 Aligned_cols=246 Identities=31% Similarity=0.372 Sum_probs=231.6
Q ss_pred HHHHhccccCCCCCC--HHHHHHHHHHH--------HHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhh
Q 007277 13 QLKDAGNLLLNPPSP--VDEVINLLDKV--------EHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVT 82 (609)
Q Consensus 13 ~l~~~G~kLis~pis--~dELLkRLkkL--------~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VA 82 (609)
+++.+|.+.+.++.+ .++||..+-+. +-.|..+.|....++++++.+++..|+.=.+..|++-++.+-..
T Consensus 409 ~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q 488 (1266)
T KOG1525|consen 409 CLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQ 488 (1266)
T ss_pred HhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHH
Confidence 677899999999999 99999999877 78888889988888999999999999999999999999999999
Q ss_pred hHHhhhhh--hcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHH--HHHHhhhhhhheeecc---CCchHHHHH
Q 007277 83 SCISEITR--ITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALS--ILDTVAKVRSCLLMLD---LECDKLVVE 155 (609)
Q Consensus 83 cCLaDILR--IyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~y--LLEsLA~VKS~VLmlD---Le~ddLI~e 155 (609)
.||.+++| |.+|..||+++.|+.||..|+..+..|.|+.+..|..... +|+.++++++|+.|++ +.|.++...
T Consensus 489 ~~ls~~vr~~I~~~k~~~~d~~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~~~C~~l~~~ 568 (1266)
T KOG1525|consen 489 SRLSEEVRDYITLSKTPNTDDSMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPSISCKELLIT 568 (1266)
T ss_pred HHHHHHHHHHhccccCCCccHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 99999999 9999999999999999999999999999998876655544 9999999999999999 459999999
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhhHhHHHHHH
Q 007277 156 MFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEA 235 (609)
Q Consensus 156 LFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~I~q~ 235 (609)
||+.||..++..++.+++..|..+|++.|.+ |+.+++..|+..+...+......+..+++.|+..|+-++.+|+.+.
T Consensus 569 v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~---v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ 645 (1266)
T KOG1525|consen 569 VKEILFELGRKKQSKNLFSSMEKELIERIAE---VSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEA 645 (1266)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhcc---hhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999988888889999999999999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHhccCCCCC
Q 007277 236 VQSRGIALDDYAEIVACICGSDDENP 261 (609)
Q Consensus 236 l~s~G~~ld~Y~~iv~sIcq~~s~~~ 261 (609)
|...|-.++-|++++.+||+...+..
T Consensus 646 ls~~~~~~~~~s~~v~~i~~~~~~~~ 671 (1266)
T KOG1525|consen 646 LSSIHPDLFKYSESVLSILEKLFSEP 671 (1266)
T ss_pred hhhcCcchhhhhHHHHHHHHHhccch
Confidence 99999999999999999999988777
No 3
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.77 E-value=3 Score=49.79 Aligned_cols=117 Identities=9% Similarity=0.123 Sum_probs=75.1
Q ss_pred CCCCCchhHHHHHHHHHhhhhhhheeeccCC---chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-CCHH
Q 007277 118 SHASGRYYMKALSILDTVAKVRSCLLMLDLE---CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-VSWD 193 (609)
Q Consensus 118 aD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe---~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~-Vp~e 193 (609)
.+|++|.| ++||+|+++-+= ...++-+ --.+...||=.|-.+.+++. .+...+...||+.+++-+.. +|..
T Consensus 603 KNPs~P~f--nHYLFEsi~~li--~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI-~EfiPYvfQlla~lve~~~~~ip~~ 677 (960)
T KOG1992|consen 603 KNPSNPQF--NHYLFESIGLLI--RKTCKANPSAVSSLEEALFPVFQTILSEDI-QEFIPYVFQLLAVLVEHSSGTIPDS 677 (960)
T ss_pred cCCCCchh--HHHHHHHHHHHH--HHHhccCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCchh
Confidence 45777776 578999997651 1122333 13567777755555555444 34557778899999998876 7776
Q ss_pred HH---HHHHHHhhccCCCCCchHHHHHHHHHhhchhhHh-----HHHHHHHHhc
Q 007277 194 LL---RILLASVRKENQDVSPTSWKLGEKVFTKCAAKLK-----TNLKEAVQSR 239 (609)
Q Consensus 194 VL---DvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~-----p~I~q~l~s~ 239 (609)
.. -+||+.-+..-+++.|+.-+|-...|...+..+. .+|..+|+.+
T Consensus 678 ~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkL 731 (960)
T KOG1992|consen 678 YSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKL 731 (960)
T ss_pred HHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHH
Confidence 43 3344444445567789998898888887665543 4566677755
No 4
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=79.42 E-value=13 Score=41.59 Aligned_cols=137 Identities=12% Similarity=0.217 Sum_probs=80.6
Q ss_pred hhhhHHhhhhhhcCCC-CCCChh---HHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhh-hhheeeccCCch---H
Q 007277 80 SVTSCISEITRITAPD-SPYDDE---LMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKV-RSCLLMLDLECD---K 151 (609)
Q Consensus 80 ~VAcCLaDILRIyAPD-APYtDd---qLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~V-KS~VLmlDLe~d---d 151 (609)
|+.=||+=|+=++.-+ .||.+. +|-.|+..+. .+|++|.|. +|+.|+|+.+ |. +++-+.+ .
T Consensus 45 ylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~------kNPsnP~Fn--HylFEsi~~lir~---~~~~~~~~v~~ 113 (435)
T PF03378_consen 45 YLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVS------KNPSNPRFN--HYLFESIGALIRF---VCEADPEAVSQ 113 (435)
T ss_dssp HHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHH------TS---HHHH--HHHHHHHHHHHHH---S-GGGHH---H
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------hCCCCcchh--hhHHHHHHHHHHh---ccCCChhHHHH
Confidence 5566666665554444 566442 2222222222 348899884 5788999876 42 2222222 5
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC--CCC---HHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchh
Q 007277 152 LVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE--DVS---WDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAA 226 (609)
Q Consensus 152 LI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE--~Vp---~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~ 226 (609)
+-..||-.|-.+...+.. +...+.-.||+.+++-.. .+| ..++..||...+.+.+.+.|+.-+|-...|...+.
T Consensus 114 ~E~~L~P~f~~ILq~dV~-EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~ 192 (435)
T PF03378_consen 114 FEEALFPPFQEILQQDVQ-EFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPS 192 (435)
T ss_dssp HHHHHHHHHHHHHHTT-T-TTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCch
Confidence 566666666666665543 334555667777777655 455 45778888887888888889988888888888877
Q ss_pred hH
Q 007277 227 KL 228 (609)
Q Consensus 227 KL 228 (609)
.+
T Consensus 193 ~i 194 (435)
T PF03378_consen 193 FI 194 (435)
T ss_dssp G-
T ss_pred hh
Confidence 55
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=78.90 E-value=31 Score=37.63 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=25.5
Q ss_pred HHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhc
Q 007277 58 LPTMKGLITNDLLRRSDMDVRLSVTSCISEITRIT 92 (609)
Q Consensus 58 ~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIy 92 (609)
..+...|+ .||.++|..||..+..||..|.+.+
T Consensus 266 ~~~~~~L~--~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 266 QKAINPLI--KLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHH--HHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred HhhHHHHH--HHhhcccchhehhHHHHHHHhhccc
Confidence 33444443 5778999999999999999999886
No 6
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.22 E-value=42 Score=43.02 Aligned_cols=165 Identities=15% Similarity=0.312 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhh--------------hhccC-CCccchhhhhhH--Hhhhhh
Q 007277 28 VDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITN--------------DLLRR-SDMDVRLSVTSC--ISEITR 90 (609)
Q Consensus 28 ~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~--------------~LLkH-kDkdVRa~VAcC--LaDILR 90 (609)
.++|-.-|++|-=-|.+..=+|.-..++|+..+-+.||.. .||.+ .++.-|+--||| |+||+|
T Consensus 989 ~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~ 1068 (1702)
T KOG0915|consen 989 GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQ 1068 (1702)
T ss_pred HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHc
Confidence 3455555666666777776676666677777777777665 45555 889999999999 569998
Q ss_pred hcCCCCCCCh--hHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCC----chHHHHHHH-------
Q 007277 91 ITAPDSPYDD--ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE----CDKLVVEMF------- 157 (609)
Q Consensus 91 IyAPDAPYtD--dqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe----~ddLI~eLF------- 157 (609)
= .|+++ +.|.+||..+|+....+.+ .--.-..-....|+ |.||-|+|.. +.+.+--+.
T Consensus 1069 g----~~~~~~~e~lpelw~~~fRvmDDIKE---sVR~aa~~~~~~ls--Kl~vr~~d~~~~~~~~~~l~~iLPfLl~~g 1139 (1702)
T KOG0915|consen 1069 G----RPFDQVKEKLPELWEAAFRVMDDIKE---SVREAADKAARALS--KLCVRICDVTNGAKGKEALDIILPFLLDEG 1139 (1702)
T ss_pred C----CChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--HHHhhhcccCCcccHHHHHHHHHHHHhccC
Confidence 6 67775 6788777777776654433 11111111222222 6688888885 222222211
Q ss_pred -------------HHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHh
Q 007277 158 -------------QHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASV 202 (609)
Q Consensus 158 -------------k~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~l 202 (609)
.+..+++. .-+..+-.+..+++-.+++-...+.+.||..+--++
T Consensus 1140 ims~v~evr~~si~tl~dl~K-ssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1140 IMSKVNEVRRFSIGTLMDLAK-SSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred cccchHHHHHHHHHHHHHHHH-hchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence 22223222 122333344445555555666667777777665544
No 7
>PTZ00429 beta-adaptin; Provisional
Probab=76.04 E-value=63 Score=38.75 Aligned_cols=146 Identities=12% Similarity=0.105 Sum_probs=83.0
Q ss_pred HHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhh
Q 007277 59 PTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKV 138 (609)
Q Consensus 59 pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~V 138 (609)
.++..|. ..|+|.+..|-+-++.|+..+.-.. +.+.++.++..+...+-.|. ++ ...-+|-+|.+|..+
T Consensus 256 ~il~~l~--~~Lq~~N~AVVl~Aik~il~l~~~~------~~~~~~~~~~rl~~pLv~L~--ss-~~eiqyvaLr~I~~i 324 (746)
T PTZ00429 256 TLLTRVL--PRMSHQNPAVVMGAIKVVANLASRC------SQELIERCTVRVNTALLTLS--RR-DAETQYIVCKNIHAL 324 (746)
T ss_pred HHHHHHH--HHhcCCCHHHHHHHHHHHHHhcCcC------CHHHHHHHHHHHHHHHHHhh--CC-CccHHHHHHHHHHHH
Confidence 3444443 4588999999999999988775211 23556666655554443442 12 223445566665333
Q ss_pred hhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHH
Q 007277 139 RSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGE 218 (609)
Q Consensus 139 KS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~ 218 (609)
-.. .-.++..-++.||-..+ -|.-|...-.+||..+.++... .+||+.|...+. +..+.=.+.|-
T Consensus 325 ~~~-------~P~lf~~~~~~Ff~~~~--Dp~yIK~~KLeIL~~Lane~Nv--~~IL~EL~eYa~----d~D~ef~r~aI 389 (746)
T PTZ00429 325 LVI-------FPNLLRTNLDSFYVRYS--DPPFVKLEKLRLLLKLVTPSVA--PEILKELAEYAS----GVDMVFVVEVV 389 (746)
T ss_pred HHH-------CHHHHHHHHHhhhcccC--CcHHHHHHHHHHHHHHcCcccH--HHHHHHHHHHhh----cCCHHHHHHHH
Confidence 211 13566666788875433 4666877788999998887532 334444444333 33222233344
Q ss_pred HHHhhchhhHhH
Q 007277 219 KVFTKCAAKLKT 230 (609)
Q Consensus 219 ~VI~~ca~KL~p 230 (609)
+-|..|+.++..
T Consensus 390 rAIg~lA~k~~~ 401 (746)
T PTZ00429 390 RAIASLAIKVDS 401 (746)
T ss_pred HHHHHHHHhChH
Confidence 556677777654
No 8
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=73.68 E-value=1.7 Score=30.73 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=21.4
Q ss_pred hhccCCCccchhhhhhHHhhhhhhc
Q 007277 68 DLLRRSDMDVRLSVTSCISEITRIT 92 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILRIy 92 (609)
++|.+++..||..++-||.+|.+.+
T Consensus 7 ~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 7 QLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 6788999999999999999998753
No 9
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.90 E-value=73 Score=38.44 Aligned_cols=149 Identities=22% Similarity=0.294 Sum_probs=83.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcccCCchhh-H-------------------HhhHHHHHhhhhhhhccCCCccchhhh
Q 007277 22 LNPPSPVDEVINLLDKVEHLLANVEQAPSRSM-R-------------------DALLPTMKGLITNDLLRRSDMDVRLSV 81 (609)
Q Consensus 22 is~pis~dELLkRLkkL~~eLs~ldQ~~~ds~-~-------------------~SL~pl~k~LVs~~LLkHkDkdVRa~V 81 (609)
+.|.....+.=..+++-+.+|..+=.++.-.. - +-+..++.- |-..+-...-.+||+.|
T Consensus 205 ~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~k-I~d~~a~dt~s~VR~sv 283 (1005)
T KOG1949|consen 205 RDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKK-ITDELAFDTSSDVRCSV 283 (1005)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHhhhccchheehhH
Confidence 35555567777777777777777766555211 1 112222222 22234444566888888
Q ss_pred hhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcc-cCCCCCchhHHHHHHHHHhhhhhhheeeccCCchHHHHHHHHHH
Q 007277 82 TSCISEITRITAPDSPYDDELMKEFFQLAVSAFEN-LSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHF 160 (609)
Q Consensus 82 AcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~-LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~F 160 (609)
--||-.|+- ..+---+|+.++-.+.. |.|.+-.----.+-||-.+-.|| |-.|
T Consensus 284 f~gl~~~l~---------np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr-----------------a~~f 337 (1005)
T KOG1949|consen 284 FKGLPMILD---------NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR-----------------AAKF 337 (1005)
T ss_pred hcCcHHHHc---------CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhh-----------------hhhh
Confidence 888888872 12333455555544442 22211111111122222222222 3456
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCC
Q 007277 161 LKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQ 207 (609)
Q Consensus 161 F~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k 207 (609)
|+++. |..|+..+=.++-.+.--++..|+..+++-++
T Consensus 338 ~~I~~----------~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k 374 (1005)
T KOG1949|consen 338 WKICP----------MDHILVRLETDSRPVSRRLVSLIFNSFLPVNK 374 (1005)
T ss_pred hcccc----------HHHHHHHHhccccHHHHHHHHHHHHhhcCCCC
Confidence 66665 77888877777777888899999999998776
No 10
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.13 E-value=96 Score=38.97 Aligned_cols=195 Identities=16% Similarity=0.150 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHH
Q 007277 28 VDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFF 107 (609)
Q Consensus 28 ~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF 107 (609)
+..+++-|.=|.+-++.+--.. +++++..|++. ..-.+.-|++.+--|+.-+| -=-+++.+..+.-
T Consensus 200 ~t~v~~~L~Ll~~~~~~~p~~l-------i~sl~e~lL~i--~~~s~v~v~~~~~q~l~~lf---~~~~~~l~a~~~a-- 265 (1176)
T KOG1248|consen 200 NTTVLRSLMLLRDVLSTFPRPL-------IKSLCEVLLNI--TTESPVLVLLEVLQCLHSLF---KKHPTALAAELNA-- 265 (1176)
T ss_pred HHHHHHHHHHHHHhhccCCHHH-------HHHHHHHHHhh--cccchHHHHHHHHHHHHHHH---hcCCCcchHHHHH--
Confidence 4445555555555555532222 22333333322 23344444544444544444 3334466544332
Q ss_pred HHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCC-chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcc
Q 007277 108 QLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186 (609)
Q Consensus 108 ~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe-~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeE 186 (609)
.++..+..|. ++..--..-++.|.-|.+-..|+-..|.+ |-.=+..+|..||.+ -....+.+.....+++..|+.|
T Consensus 266 -~lL~al~~l~-ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~-~~s~~~e~~q~a~q~l~~il~~ 342 (1176)
T KOG1248|consen 266 -RLLTALMTLS-PSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTI-LESLIEELVQAASQSLKEILKE 342 (1176)
T ss_pred -HHHHHHHHhC-CCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHH-HhcccHHHHHHHHHHHHHHhcc
Confidence 2333333333 33333346677788888888888888887 667778889999984 4445567778899999999999
Q ss_pred cCCCCHHHHHHHHHHhhccCC-CCCchHHHHHHHHHhhchhhHhHHHHHHHHhc
Q 007277 187 SEDVSWDLLRILLASVRKENQ-DVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSR 239 (609)
Q Consensus 187 sE~Vp~eVLDvIL~~ll~~~k-~~~PaA~~LA~~VI~~ca~KL~p~I~q~l~s~ 239 (609)
+-.+-..+-..++..++...- ...+..+++-..++..|+..--|++...|+++
T Consensus 343 sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l 396 (1176)
T KOG1248|consen 343 SVTVIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELTKTLEGL 396 (1176)
T ss_pred cCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHH
Confidence 988666666666776665442 13355556666677788887777777777644
No 11
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=69.73 E-value=47 Score=34.70 Aligned_cols=139 Identities=12% Similarity=0.203 Sum_probs=82.9
Q ss_pred hhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccC
Q 007277 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDL 147 (609)
..|.+.|..+|+-.--||+++|-=+.|+. .+..|..-++.||.+-| .|.. .+...|.-....+-|-.+
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~-L~~~ev~~L~~F~~~rl---~D~~--------~~~~~l~gl~~L~~~~~~ 73 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDF-LSRQEVQVLLDFFCSRL---DDHA--------CVQPALKGLLALVKMKNF 73 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhh-ccHHHHHHHHHHHHHHh---ccHh--------hHHHHHHHHHHHHhCcCC
Confidence 46788999999999999999997655544 78899999999999866 3422 233333333333344444
Q ss_pred CchHHHHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhcc----cCCCCHHHHHHHHHHhhccCCCC--CchHHHHHHHH
Q 007277 148 ECDKLVVEMFQHFLKVIR-SNHPHFVFAAMETIMTLVIDE----SEDVSWDLLRILLASVRKENQDV--SPTSWKLGEKV 220 (609)
Q Consensus 148 e~ddLI~eLFk~FF~iVr-~~hp~kV~~~M~dILs~VIeE----sE~Vp~eVLDvIL~~ll~~~k~~--~PaA~~LA~~V 220 (609)
.. +.+..+.+.+|+-+. ..++...+...-.||..+++. ...+..+.+..+++.+ .+.++. .-.+++|...+
T Consensus 74 ~~-~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~-~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 74 SP-ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLI-DGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred Ch-hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHh-ccCCCHHHHHHHHHHHHHH
Confidence 42 235555555555333 345666665555555555554 3456677777666643 444432 23344444433
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=69.62 E-value=7.8 Score=42.17 Aligned_cols=118 Identities=15% Similarity=0.209 Sum_probs=59.8
Q ss_pred hhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHH-HHHHHHHHhcccCCCCCchhHHHHHHHHHh-hhhhhheee
Q 007277 67 NDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKE-FFQLAVSAFENLSHASGRYYMKALSILDTV-AKVRSCLLM 144 (609)
Q Consensus 67 ~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKD-IF~LfI~qf~~LaD~ssp~y~q~~yLLEsL-A~VKS~VLm 144 (609)
..+|.|++.-||--++.|+..|+|. .|+ .+.+ ++..+...| .|++-..-...+++|..+ ..-+.+
T Consensus 120 ~~ll~~~~~~VRk~A~~~l~~i~~~-~p~------~~~~~~~~~l~~lL---~d~~~~V~~~a~~~l~~i~~~~~~~--- 186 (526)
T PF01602_consen 120 IKLLSDPSPYVRKKAALALLKIYRK-DPD------LVEDELIPKLKQLL---SDKDPSVVSAALSLLSEIKCNDDSY--- 186 (526)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHH-CHC------CHHGGHHHHHHHHT---THSSHHHHHHHHHHHHHHHCTHHHH---
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcc-CHH------HHHHHHHHHHhhhc---cCCcchhHHHHHHHHHHHccCcchh---
Confidence 3568899999999999999999999 222 2222 333333333 444422333344444444 000110
Q ss_pred ccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCC--HHHHHHHHHHhh
Q 007277 145 LDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVS--WDLLRILLASVR 203 (609)
Q Consensus 145 lDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp--~eVLDvIL~~ll 203 (609)
..++..+|+.+...+. ...+-+...+..++..+.......+ ..++..|+..+.
T Consensus 187 -----~~~~~~~~~~L~~~l~-~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~ 241 (526)
T PF01602_consen 187 -----KSLIPKLIRILCQLLS-DPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQ 241 (526)
T ss_dssp -----TTHHHHHHHHHHHHHT-CCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH
T ss_pred -----hhhHHHHHHHhhhccc-ccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhh
Confidence 0345555555554442 3333344444555554444433334 445555555444
No 13
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.38 E-value=32 Score=41.32 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=33.6
Q ss_pred hhhccCCC----ccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHH
Q 007277 67 NDLLRRSD----MDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAV 111 (609)
Q Consensus 67 ~~LLkHkD----kdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI 111 (609)
.+.|.+.| .+++..++.||.-|+|+.+||+|-..++|-..|--++
T Consensus 557 ~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~ 605 (859)
T KOG1241|consen 557 SQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIF 605 (859)
T ss_pred HHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHH
Confidence 45666666 4689999999999999999998877776554443333
No 14
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.18 E-value=1.7e+02 Score=36.97 Aligned_cols=160 Identities=15% Similarity=0.117 Sum_probs=96.7
Q ss_pred CCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCC---
Q 007277 72 RSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE--- 148 (609)
Q Consensus 72 HkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe--- 148 (609)
..+.-+|+----||.-|++..- .+..--|+++|...+=.+.+.+...=+..|-+|-.|..+.++ +|..
T Consensus 708 s~~~~~~~~rl~~L~~L~~~~~------~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~---~d~g~e~ 778 (1176)
T KOG1248|consen 708 SSSSPAQASRLKCLKRLLKLLS------AEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSS---LDDGNEP 778 (1176)
T ss_pred ccchHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhh---hcccccc
Confidence 3445577777889999998853 344445556665555555665555666678888888875444 4553
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhh-
Q 007277 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAK- 227 (609)
Q Consensus 149 ~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~K- 227 (609)
..+.|.+++.+++...-++-...+-..+..|-..+-+....+..+.+.-+|..+--.=.+..+.-...|...|..+-.+
T Consensus 779 ~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~ 858 (1176)
T KOG1248|consen 779 ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF 858 (1176)
T ss_pred hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC
Confidence 4567777777777653333333343436665555666677799998888887753322333445555555555554443
Q ss_pred ----HhHHHHHHHHhcC
Q 007277 228 ----LKTNLKEAVQSRG 240 (609)
Q Consensus 228 ----L~p~I~q~l~s~G 240 (609)
|++++.++|-+++
T Consensus 859 pe~~l~~~~~~LL~sll 875 (1176)
T KOG1248|consen 859 PEECLSPHLEELLPSLL 875 (1176)
T ss_pred CHHHHhhhHHHHHHHHH
Confidence 4566655555443
No 15
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=61.55 E-value=1.1e+02 Score=35.64 Aligned_cols=143 Identities=17% Similarity=0.209 Sum_probs=74.2
Q ss_pred HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhcc-cCCchhhHHhhHHHHHhhhh-hhhccCCCccchhhhhhHH
Q 007277 8 IELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVE-QAPSRSMRDALLPTMKGLIT-NDLLRRSDMDVRLSVTSCI 85 (609)
Q Consensus 8 ~ele~~l~~~G~kLis~pis~dELLkRLkkL~~eLs~ld-Q~~~ds~~~SL~pl~k~LVs-~~LLkHkDkdVRa~VAcCL 85 (609)
+|.|+.+.+.-.+++.. .+.+|. ..|..+-.+|.-+. +.++.+ +..|..+..+.+. ..-+...|.+.=--...|+
T Consensus 173 ~E~e~~i~~~ikkvL~D-VTaeEF-~l~m~lL~~lk~~~~~~t~~g-~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~ 249 (556)
T PF05918_consen 173 KEMEEFIVDEIKKVLQD-VTAEEF-ELFMSLLKSLKIYGGKQTIEG-RQELVDIIEEQADLDQPFDPSDPESIDRLISCL 249 (556)
T ss_dssp HHHHHHHHHHHHHHCTT---HHHH-HHHHHHHHTSGG---GSSHHH-HHHHHHHHHHHHTTTS---SSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-ccHHHH-HHHHHHHHhCccccccCChHH-HHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHH
Confidence 66777777777777753 444443 33334444554432 233433 3335444443331 2224555554333344455
Q ss_pred hhhhhhcCCCCCCChhHHHHHHHHHHHH-hcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHH
Q 007277 86 SEITRITAPDSPYDDELMKEFFQLAVSA-FENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKV 163 (609)
Q Consensus 86 aDILRIyAPDAPYtDdqLKDIF~LfI~q-f~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~i 163 (609)
-.-+=+|.+.+ .-..+|.++..+ |+.|.+... ...+.||..||++-++.- ++++.+++..+|+.|...
T Consensus 250 ~~Alp~fs~~v-----~Sskfv~y~~~kvlP~l~~l~e---~~kl~lLk~lAE~s~~~~--~~d~~~~L~~i~~~L~~y 318 (556)
T PF05918_consen 250 RQALPFFSRGV-----SSSKFVNYMCEKVLPKLSDLPE---DRKLDLLKLLAELSPFCG--AQDARQLLPSIFQLLKKY 318 (556)
T ss_dssp HHHGGG-BTTB-------HHHHHHHHHHTCCCTT--------HHHHHHHHHHHHHTT------THHHHHHHHHHHHHTT
T ss_pred HHhhHHhcCCC-----ChHHHHHHHHHHhcCChhhCCh---HHHHHHHHHHHHHcCCCC--cccHHHHHHHHHHHHHHh
Confidence 44454544433 456788888887 777777632 567899999999987754 555778888888887754
No 16
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=58.78 E-value=1.1e+02 Score=29.47 Aligned_cols=78 Identities=22% Similarity=0.283 Sum_probs=44.9
Q ss_pred ccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCC-Cc-----hhHH----HHHHHHHhhhhh
Q 007277 70 LRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHAS-GR-----YYMK----ALSILDTVAKVR 139 (609)
Q Consensus 70 LkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~s-sp-----~y~q----~~yLLEsLA~VK 139 (609)
|.-.|.+||.++..|+.++++-.-|++ |+..|+..+..|.+.. .+ ...+ |-+||+.+.+
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~---------i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-- 140 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNI---------IYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-- 140 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchH---------HHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--
Confidence 344567799999999999988765554 3566666666665532 12 2222 3334444332
Q ss_pred hheeeccCCchHHHHHHHHHHHHHh
Q 007277 140 SCLLMLDLECDKLVVEMFQHFLKVI 164 (609)
Q Consensus 140 S~VLmlDLe~ddLI~eLFk~FF~iV 164 (609)
|-..+.|+..+++.|...+
T Consensus 141 ------d~~~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 141 ------DKQKESLVEKLCQRFLNAV 159 (178)
T ss_pred ------HHHHHHHHHHHHHHHHHHc
Confidence 2224566666666666654
No 17
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=57.56 E-value=1.9e+02 Score=28.16 Aligned_cols=181 Identities=13% Similarity=0.176 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhc-ccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhH
Q 007277 24 PPSPVDEVINLLDKVEHLLANV-EQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDEL 102 (609)
Q Consensus 24 ~pis~dELLkRLkkL~~eLs~l-dQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdq 102 (609)
...+-++-+.-|+.|...+..- .++........|..+...|+ ..+. ....-|-.-++-||.+|.+.+...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~-~~l~-d~Rs~v~~~A~~~l~~l~~~l~~~------- 87 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAII-KQLS-DLRSKVSKTACQLLSDLARQLGSH------- 87 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHH-H-S--HH---HHHHHHHHHHHHHHHHGGG-------
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHH-HHHh-hhHHHHHHHHHHHHHHHHHHHhHh-------
Confidence 3445566666666666666654 22222323333332222222 2222 222334445566788888885443
Q ss_pred HHHHHHHHHHH-hcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 007277 103 MKEFFQLAVSA-FENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMT 181 (609)
Q Consensus 103 LKDIF~LfI~q-f~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs 181 (609)
+...+..++.. |..+++............|..+...=++ ...++ +..+... ..+.+..|+......|.
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-------~~~~~---~~~l~~~-~~~Kn~~vR~~~~~~l~ 156 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY-------SPKIL---LEILSQG-LKSKNPQVREECAEWLA 156 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---------HHH---HHHHHHH-TT-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc-------HHHHH---HHHHHHH-HhCCCHHHHHHHHHHHH
Confidence 55555555554 5666775554555556666665543110 11222 3333333 23556778777788888
Q ss_pred HHhcccC----CCCHH-HHHHHHHHhhccCCCCCchHHHHHHHHHhhc
Q 007277 182 LVIDESE----DVSWD-LLRILLASVRKENQDVSPTSWKLGEKVFTKC 224 (609)
Q Consensus 182 ~VIeEsE----~Vp~e-VLDvIL~~ll~~~k~~~PaA~~LA~~VI~~c 224 (609)
.+|.... .+... .++.|...+...-.+..|..+..|+.++..-
T Consensus 157 ~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 157 IILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp HHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 8888766 12222 2344444444333445566666666655443
No 18
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=56.90 E-value=2e+02 Score=35.30 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHHHHH----------HhcccCCc---hhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhh
Q 007277 25 PSPVDEVINLLDKVEHLL----------ANVEQAPS---RSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRI 91 (609)
Q Consensus 25 pis~dELLkRLkkL~~eL----------s~ldQ~~~---ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRI 91 (609)
.+...+|+..|+.++.-= .-+.|-.. -+...-|.++.+-+ ...|.....-||..+|.||+-+.-.
T Consensus 506 algip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii--~~gl~De~qkVR~itAlalsalaea 583 (1172)
T KOG0213|consen 506 ALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKII--EHGLKDEQQKVRTITALALSALAEA 583 (1172)
T ss_pred HhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHH--HHhhcccchhhhhHHHHHHHHHHHh
Confidence 345567777777665432 11111100 12334444444432 2345556677999999999998866
Q ss_pred cCCCCCCChhHHHHHHHHHHH---------------HhcccCCCCCchhHHHHH---HHHHhhhh------------hhh
Q 007277 92 TAPDSPYDDELMKEFFQLAVS---------------AFENLSHASGRYYMKALS---ILDTVAKV------------RSC 141 (609)
Q Consensus 92 yAPDAPYtDdqLKDIF~LfI~---------------qf~~LaD~ssp~y~q~~y---LLEsLA~V------------KS~ 141 (609)
- .||.-+++-.||..+-. .+.-|=.-..+.|.-||. ||-.+-+. |.+
T Consensus 584 a---~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv 660 (1172)
T KOG0213|consen 584 A---TPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVV 660 (1172)
T ss_pred c---CCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHH
Confidence 3 57999998888886532 222222223445555555 44443221 112
Q ss_pred eeeccCC-------chHHHHHHHHHHHH
Q 007277 142 LLMLDLE-------CDKLVVEMFQHFLK 162 (609)
Q Consensus 142 VLmlDLe-------~ddLI~eLFk~FF~ 162 (609)
--||+-+ -.+++-++|+.|+.
T Consensus 661 ~qcc~t~Gv~~~y~r~dilp~ff~~fw~ 688 (1172)
T KOG0213|consen 661 KQCCATDGVEPAYIRFDILPEFFFSFWG 688 (1172)
T ss_pred HHHhcccCCCHHHHhhhhhHHHHhhhhh
Confidence 2234443 25889999999986
No 19
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.06 E-value=65 Score=39.14 Aligned_cols=137 Identities=17% Similarity=0.281 Sum_probs=89.3
Q ss_pred Cccchhhhh--------------hHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhh
Q 007277 74 DMDVRLSVT--------------SCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVR 139 (609)
Q Consensus 74 DkdVRa~VA--------------cCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VK 139 (609)
|.|+|+++- ...|.++-+.||-. |+.-|-+-+|+.|+. .... ++-+|.++|.+-
T Consensus 282 d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-----~~~~i~kaLvrLLrs--~~~v-----qyvvL~nIa~~s 349 (968)
T KOG1060|consen 282 DPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-----QVTKIAKALVRLLRS--NREV-----QYVVLQNIATIS 349 (968)
T ss_pred CccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-----HHHHHHHHHHHHHhc--CCcc-----hhhhHHHHHHHH
Confidence 777777642 23356777777754 888888877776652 2222 235677776652
Q ss_pred hheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHH
Q 007277 140 SCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEK 219 (609)
Q Consensus 140 S~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~ 219 (609)
.- -..|+...|+.|| |+..-|..+-..=..||+.+++|+. -..+|..+...+...+.. .+| .|..
T Consensus 350 ~~-------~~~lF~P~lKsFf--v~ssDp~~vk~lKleiLs~La~esn--i~~ILrE~q~YI~s~d~~--faa--~aV~ 414 (968)
T KOG1060|consen 350 IK-------RPTLFEPHLKSFF--VRSSDPTQVKILKLEILSNLANESN--ISEILRELQTYIKSSDRS--FAA--AAVK 414 (968)
T ss_pred hc-------chhhhhhhhhceE--eecCCHHHHHHHHHHHHHHHhhhcc--HHHHHHHHHHHHhcCchh--HHH--HHHH
Confidence 11 2367777777787 6777788888888999999999963 345666666666666552 333 5667
Q ss_pred HHhhchhhHhHHHHHHHH
Q 007277 220 VFTKCAAKLKTNLKEAVQ 237 (609)
Q Consensus 220 VI~~ca~KL~p~I~q~l~ 237 (609)
-|.+|+..+-..-...|+
T Consensus 415 AiGrCA~~~~sv~~tCL~ 432 (968)
T KOG1060|consen 415 AIGRCASRIGSVTDTCLN 432 (968)
T ss_pred HHHHHHHhhCchhhHHHH
Confidence 799999887554444444
No 20
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=55.57 E-value=1.4e+02 Score=31.28 Aligned_cols=123 Identities=20% Similarity=0.193 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHH--
Q 007277 28 VDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKE-- 105 (609)
Q Consensus 28 ~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKD-- 105 (609)
.++-+..+++++.....-.++-.+.....+..++-.|++.- ..+.++.-|+-..|.||++. -|+-.+-+..
T Consensus 27 s~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~---~~~~d~v~yvL~li~dll~~----~~~~~~~~~~~~ 99 (312)
T PF03224_consen 27 SEEDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL---SSNDDTVQYVLTLIDDLLSD----DPSRVELFLELA 99 (312)
T ss_dssp -HHHHHHHHHHHHHHH-------------------HHHHHH------HHHHHHHHHHHHHHHH-----SSSSHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc---cCcHHHHHHHHHHHHHHHhc----CHHHHHHHHHhc
Confidence 34445666666666655533333322445555555555554 56888999999999999975 3444443333
Q ss_pred ------HHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhc
Q 007277 106 ------FFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRS 166 (609)
Q Consensus 106 ------IF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~ 166 (609)
.|.-|++ .|...+..-..+..++|..|+.-..- .......+++..||+.++.
T Consensus 100 ~~~~~~~~~~fl~---ll~~~D~~i~~~a~~iLt~Ll~~~~~------~~~~~~~~~l~~ll~~L~~ 157 (312)
T PF03224_consen 100 KQDDSDPYSPFLK---LLDRNDSFIQLKAAFILTSLLSQGPK------RSEKLVKEALPKLLQWLSS 157 (312)
T ss_dssp H-TTH--HHHHHH---H-S-SSHHHHHHHHHHHHHHHTSTTT--------HHHHHHHHHHHHHHHH-
T ss_pred ccccchhHHHHHH---HhcCCCHHHHHHHHHHHHHHHHcCCc------cccchHHHHHHHHHHHHHH
Confidence 5666665 33444555566777888777654311 1223234556666666554
No 21
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=50.28 E-value=51 Score=29.52 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=39.9
Q ss_pred hHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcc-cCCCCCchhHHHHHHHHHh
Q 007277 57 LLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFEN-LSHASGRYYMKALSILDTV 135 (609)
Q Consensus 57 L~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~-LaD~ssp~y~q~~yLLEsL 135 (609)
+..+..-+. ..+...|.-||-|++-||-+|.+++- +++-.-|.-+|..+-. ++|++ +.=+..-.+|.+|
T Consensus 25 l~~Il~pVL--~~~~D~d~rVRy~AcEaL~ni~k~~~-------~~~l~~f~~IF~~L~kl~~D~d-~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 25 LDEILPPVL--KCFDDQDSRVRYYACEALYNISKVAR-------GEILPYFNEIFDALCKLSADPD-ENVRSAAELLDRL 94 (97)
T ss_pred HHHHHHHHH--HHcCCCcHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHcCCc-hhHHHHHHHHHHH
Confidence 334444444 56778888899999999999999952 2333344444444333 34443 3333444555544
No 22
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=47.53 E-value=2.6e+02 Score=29.17 Aligned_cols=174 Identities=9% Similarity=0.142 Sum_probs=0.0
Q ss_pred hhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhH------HHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhh
Q 007277 63 GLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDEL------MKEFFQLAVSAFENLSHASGRYYMKALSILDTVA 136 (609)
Q Consensus 63 ~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdq------LKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA 136 (609)
.|.-..+ ...+..||+-+.-||.||+..|-++..-.... ...+.++|...|... +++ -+....|-++
T Consensus 67 ~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~-----~~~~a~EGl~ 139 (298)
T PF12719_consen 67 PLFLQAL-QKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-NPE-----LQAIAVEGLC 139 (298)
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-CHH-----HHHHHHHHHH
Q ss_pred hhhhheeeccCCchHHHHHHHHHHHHHhhc---------------------CCchhHHHHHHHHHHHHhcccCCC-----
Q 007277 137 KVRSCLLMLDLECDKLVVEMFQHFLKVIRS---------------------NHPHFVFAAMETIMTLVIDESEDV----- 190 (609)
Q Consensus 137 ~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~---------------------~hp~kV~~~M~dILs~VIeEsE~V----- 190 (609)
+.=..-.+.| ...++..|+-.+|+-... .|+..+.......+..+..-.+..
T Consensus 140 KLlL~~~i~~--~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~ 217 (298)
T PF12719_consen 140 KLLLSGRISD--PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLA 217 (298)
T ss_pred HHHhcCCCCc--HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchh
Q ss_pred ---CHHHHHHHHHHhhccCCCCCch------------HHHHHHHHHhhchhh--HhHHHHHHHHhcCCCCcc
Q 007277 191 ---SWDLLRILLASVRKENQDVSPT------------SWKLGEKVFTKCAAK--LKTNLKEAVQSRGIALDD 245 (609)
Q Consensus 191 ---p~eVLDvIL~~ll~~~k~~~Pa------------A~~LA~~VI~~ca~K--L~p~I~q~l~s~G~~ld~ 245 (609)
+..+...++.-.-+........ |-.+...+...+..+ ..+.++++|..+-++.++
T Consensus 218 ~v~~~~v~~~lv~lt~~~~~~~~~~~~~~~~~~h~~La~~il~~i~~~~~~~~~~~k~~~~~L~~L~i~~~~ 289 (298)
T PF12719_consen 218 MVSPSQVASFLVDLTDPSKLVKESNQEIQNESVHVDLAIDILNEILSDPEKEKEERKALCKALSKLEISLDE 289 (298)
T ss_pred hCCHHHHHHHHHHHCChhhccCccccccccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHhccccCcCC
No 23
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=46.89 E-value=94 Score=35.86 Aligned_cols=102 Identities=15% Similarity=0.312 Sum_probs=66.2
Q ss_pred eccCC-chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCC----CCCchHHHHHH
Q 007277 144 MLDLE-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQ----DVSPTSWKLGE 218 (609)
Q Consensus 144 mlDLe-~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k----~~~PaA~~LA~ 218 (609)
.+|++ .-+||.+|+-++...+.+.+.--|+.-+. +.+|.+-|.-|+..|...+. .+.|-..++.-
T Consensus 273 ~id~~~~~~Li~ELd~~vl~~v~DQngnHViQK~i----------e~~p~~~~~Fiv~~f~~~~~~~~ls~~~YGCRVIQ 342 (503)
T KOG1488|consen 273 KVDVSLQIQLIDELDGHLLKCVKDQNGNHVIQKCI----------ETLPPDAWQFIVDFFSGDDNLLELSTHKYGCRVIQ 342 (503)
T ss_pred hcCHHHHHHHHHHHHhhHHHHHhhcccceehhhhh----------hccChHHHHHHHHHhcCCCceeEeeccCcccHHHH
Confidence 34444 56899999888888888765555533332 36999999999999987543 35677777777
Q ss_pred HHHhhchhhHhH-HHHHHHHhc-CCCCcchHH-HHHHHhc
Q 007277 219 KVFTKCAAKLKT-NLKEAVQSR-GIALDDYAE-IVACICG 255 (609)
Q Consensus 219 ~VI~~ca~KL~p-~I~q~l~s~-G~~ld~Y~~-iv~sIcq 255 (609)
++++.|...=+. .+-.....+ .+.-|.|.+ ||--|-+
T Consensus 343 r~lE~c~~~~~~~i~~ei~~~~~~L~~dQygNYVIQHVie 382 (503)
T KOG1488|consen 343 RILEHCSEDQKQPLMEEIIRNCDQLAQDQYGNYVIQHVIE 382 (503)
T ss_pred HHhhcCChHhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Confidence 778888765433 333333333 345577766 4444433
No 24
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=46.67 E-value=32 Score=26.50 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=32.2
Q ss_pred HHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhh
Q 007277 40 HLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88 (609)
Q Consensus 40 ~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDI 88 (609)
..|..+-+...+.+...+..++..|+ .+|++.+..||..++-||..|
T Consensus 9 ~aLg~l~~~~~~~~~~~~~~~~~~L~--~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 9 WALGRLAEGCPELLQPYLPELLPALI--PLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHCTTTTTHHHHHHHHHHHHHHHH--HHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHhhHhcccHHHHHHHHHHHHHHHH--HHHcCCCHHHHHHHHHHHhcC
Confidence 34555555444444555566666666 678888889999999998765
No 25
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=46.47 E-value=1.7e+02 Score=33.78 Aligned_cols=150 Identities=11% Similarity=0.224 Sum_probs=77.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhH
Q 007277 23 NPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDEL 102 (609)
Q Consensus 23 s~pis~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdq 102 (609)
..++++.+|...|+.|..+.+.++.. .. .+..+|++-..+...+.-|++|+.-++.=+. -...-
T Consensus 45 ~d~~~~~~l~~~L~~L~~~Vs~Ld~~-~~-------~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvs--------a~~~y 108 (563)
T PF05327_consen 45 KDAISVSQLIRWLKALSSCVSLLDSS-CK-------QLVEAILSLNWLGRDEDFVEAYIQFLINLVS--------AQPKY 108 (563)
T ss_dssp TTS--HHHHHHHHHHHHHGGGGG-SC-CH-------HHHHHHHT-TGGGS-HHHHHHHHHHHHHHHH--------H-GGG
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhH-HH-------HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH--------hhHHH
Confidence 45667899999999999999999986 33 4566666667777777777777753221111 01345
Q ss_pred HHHHHHHHHHHhcccCC-----------CCCchhHHHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCc--
Q 007277 103 MKEFFQLAVSAFENLSH-----------ASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHP-- 169 (609)
Q Consensus 103 LKDIF~LfI~qf~~LaD-----------~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp-- 169 (609)
+..|+..+|..|..-.. ....-|.+.+.+|..|..+ +..-...+..++...+|
T Consensus 109 l~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~l--------------vP~s~~~L~~~l~~~FP~~ 174 (563)
T PF05327_consen 109 LSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILRL--------------VPTSPSFLIPILVQNFPHK 174 (563)
T ss_dssp HHHHHHHHHHGGGS-HHHHHH---------------HHHHHHHHHHH---------------GGGHHHHHHHHHHTS--T
T ss_pred HHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHHH--------------cCCCHHHHHHHHHHcCcCC
Confidence 66666777766652211 1233566677777776543 12222333333333332
Q ss_pred ---hh-HHHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Q 007277 170 ---HF-VFAAMETIMTLVIDESEDVSWDLLRILLASVR 203 (609)
Q Consensus 170 ---~k-V~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll 203 (609)
.. ...++..+| .+++-+..+-.++|..|+..++
T Consensus 175 ~~~~~~~~~Yv~NlL-~l~~Y~P~L~~~Il~lIi~rLi 211 (563)
T PF05327_consen 175 RKSKDEHVNYVRNLL-RLTEYCPELRSDILSLIIERLI 211 (563)
T ss_dssp TS-HHHHHHHHHHHH-HHHCC-GGGHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH-HHHcchHHHHHHHHHHHHHHHH
Confidence 22 333444433 3555556666677777766654
No 26
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.73 E-value=3.6e+02 Score=33.21 Aligned_cols=155 Identities=19% Similarity=0.167 Sum_probs=93.6
Q ss_pred HhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHH--HHHHH
Q 007277 55 DALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMK--ALSIL 132 (609)
Q Consensus 55 ~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q--~~yLL 132 (609)
+....++++|+. |--.+++||-.|-|||+-|-- .-+.+|.=.+..|-=- +.+|+-.+ -..||
T Consensus 318 ~~~~~i~kaLvr---LLrs~~~vqyvvL~nIa~~s~-----------~~~~lF~P~lKsFfv~--ssDp~~vk~lKleiL 381 (968)
T KOG1060|consen 318 NQVTKIAKALVR---LLRSNREVQYVVLQNIATISI-----------KRPTLFEPHLKSFFVR--SSDPTQVKILKLEIL 381 (968)
T ss_pred HHHHHHHHHHHH---HHhcCCcchhhhHHHHHHHHh-----------cchhhhhhhhhceEee--cCCHHHHHHHHHHHH
Confidence 456678888988 444678899888888887642 2234455444443311 23443332 24677
Q ss_pred HHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCch
Q 007277 133 DTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPT 212 (609)
Q Consensus 133 EsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~Pa 212 (609)
.+||.-..+ -++|+.|-..|+..+- .+...-..-+..+=.-.-.|+..+|+-|+.-+..++....-.
T Consensus 382 s~La~esni------------~~ILrE~q~YI~s~d~-~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~e 448 (968)
T KOG1060|consen 382 SNLANESNI------------SEILRELQTYIKSSDR-SFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAE 448 (968)
T ss_pred HHHhhhccH------------HHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHH
Confidence 777765433 3445555554554333 333332333444444555789999999999888887776666
Q ss_pred HHHHHHHHHhhchhhHhHHHHHHHHh
Q 007277 213 SWKLGEKVFTKCAAKLKTNLKEAVQS 238 (609)
Q Consensus 213 A~~LA~~VI~~ca~KL~p~I~q~l~s 238 (609)
|-..-+.+|.+-..+--.+|.+++..
T Consensus 449 aV~vIk~Llq~~p~~h~~ii~~La~l 474 (968)
T KOG1060|consen 449 AVVVIKRLLQKDPAEHLEILFQLARL 474 (968)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 66666777777666655566666553
No 27
>KOG4256 consensus Kinetochore component [Cell cycle control, cell division, chromosome partitioning]
Probab=44.58 E-value=2.1e+02 Score=36.25 Aligned_cols=94 Identities=18% Similarity=0.268 Sum_probs=50.1
Q ss_pred hhhhccCCCccchhhhhhHHhhhhhhcCCCCCC------------------------ChhHHHHHHHHHHHHhcccCCCC
Q 007277 66 TNDLLRRSDMDVRLSVTSCISEITRITAPDSPY------------------------DDELMKEFFQLAVSAFENLSHAS 121 (609)
Q Consensus 66 s~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPY------------------------tDdqLKDIF~LfI~qf~~LaD~s 121 (609)
.+.+++.-|. ..+.-|-|+-|++|-||--|-| +.+.++|||.-|+ +
T Consensus 499 KkRlikdeDi-lalI~ad~lkevlgahaiiagf~eafePsrekfnesiW~eFlealhdaddlidIflefi---------s 568 (2209)
T KOG4256|consen 499 KKRLIKDEDI-LALIEADCLKEVLGAHAIIAGFPEAFEPSREKFNESIWDEFLEALHDADDLIDIFLEFI---------S 568 (2209)
T ss_pred HHhhcchHHH-HHHHHHHHHHHHHhhhhhhccCccccCCchhhhcchhHHHHHHhhcccchHHHHHHHHh---------h
Confidence 3445554444 5667799999999988844432 2234455554444 2
Q ss_pred CchhHHHHHHHHHh-hhhhhheeeccCC-chHHHHHHHHHHHHHhhcCCch
Q 007277 122 GRYYMKALSILDTV-AKVRSCLLMLDLE-CDKLVVEMFQHFLKVIRSNHPH 170 (609)
Q Consensus 122 sp~y~q~~yLLEsL-A~VKS~VLmlDLe-~ddLI~eLFk~FF~iVr~~hp~ 170 (609)
...|.+.-||.-+- |.+-+. .+.|.+ --.-+..||+.|.+.++.+.+.
T Consensus 569 danftcAq~i~lRHganfedr-f~~deentisrLEsLfrmfidaiSadiSk 618 (2209)
T KOG4256|consen 569 DANFTCAQVIFLRHGANFEDR-FCDDEENTISRLESLFRMFIDAISADISK 618 (2209)
T ss_pred ccceeehhhHHHhhcCchhhh-hccchhhhHHHHHHHHHHHHHHhhhhHHH
Confidence 23333333332221 222111 111111 1223899999999999987543
No 28
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.21 E-value=97 Score=37.20 Aligned_cols=111 Identities=17% Similarity=0.288 Sum_probs=74.6
Q ss_pred HHHHHHhhhhhhheeeccCC-chHHHHHHHHHHHHHhh--------cCCchhH-------HHHHHHHHHHHhccc----C
Q 007277 129 LSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFLKVIR--------SNHPHFV-------FAAMETIMTLVIDES----E 188 (609)
Q Consensus 129 ~yLLEsLA~VKS~VLmlDLe-~ddLI~eLFk~FF~iVr--------~~hp~kV-------~~~M~dILs~VIeEs----E 188 (609)
|-|||.|+.|-+.+-.--++ |..+ |+-+|+++. ..++..+ .-.-.++++.+++-. +
T Consensus 580 fPLLEClSsia~AL~~gF~P~~~~V----y~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie 655 (885)
T KOG2023|consen 580 FPLLECLSSIASALGVGFLPYAQPV----YQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIE 655 (885)
T ss_pred HHHHHHHHHHHHHHhccccccCHHH----HHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchH
Confidence 46888888887766555556 5544 444555444 2222221 112234455444432 1
Q ss_pred --CCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhhHhHHHHHHHHhcCCCC
Q 007277 189 --DVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIAL 243 (609)
Q Consensus 189 --~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~I~q~l~s~G~~l 243 (609)
.-+..+++++|..+..+-+...-.||.|--+++..|.+.+.|++..||--+|.-+
T Consensus 656 ~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl 712 (885)
T KOG2023|consen 656 PLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANL 712 (885)
T ss_pred HHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcC
Confidence 2345688999999988888888889999999999999999999999998766543
No 29
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=42.82 E-value=2.6e+02 Score=28.74 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHhcccC
Q 007277 100 DELMKEFFQLAVSAFENLS 118 (609)
Q Consensus 100 DdqLKDIF~LfI~qf~~La 118 (609)
+++...||..|...+..|+
T Consensus 70 ~~~~~~i~~~~~~~~~~l~ 88 (322)
T cd07920 70 EEQRLQLLEKILGHVVRLS 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3444445544444444443
No 30
>PTZ00429 beta-adaptin; Provisional
Probab=41.93 E-value=7.2e+02 Score=30.21 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=22.1
Q ss_pred hhccCCCccchhhhhhHHhhhhhhcCCC
Q 007277 68 DLLRRSDMDVRLSVTSCISEITRITAPD 95 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILRIyAPD 95 (609)
..|.|++.-||--+|.|+.-|+|+ .|+
T Consensus 147 k~L~D~~pYVRKtAalai~Kly~~-~pe 173 (746)
T PTZ00429 147 RAVADPDPYVRKTAAMGLGKLFHD-DMQ 173 (746)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhh-Ccc
Confidence 345789999999999999999997 444
No 31
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=41.71 E-value=1.1e+02 Score=31.96 Aligned_cols=112 Identities=15% Similarity=0.276 Sum_probs=52.8
Q ss_pred HhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHH------HHHHHHhcccC-CCCCchhHH
Q 007277 55 DALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFF------QLAVSAFENLS-HASGRYYMK 127 (609)
Q Consensus 55 ~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF------~LfI~qf~~La-D~ssp~y~q 127 (609)
..|..+..-|-+ .+++.|.+++..+..||+.+||+ .+.+.+| ..++..+.... ...+..++-
T Consensus 146 ~~l~~ll~~L~~--~l~~~~~~~~~~av~~L~~LL~~---------~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 146 EALPKLLQWLSS--QLSSSDSELQYIAVQCLQNLLRS---------KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp HHHHHHHHHHH---TT-HHHH---HHHHHHHHHHHTS---------HHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred HHHHHHHHHHHH--hhcCCCcchHHHHHHHHHHHhCc---------chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 456666666555 77888999999999999999987 3333333 34444332211 233444444
Q ss_pred HHHHHHHhhhhhhheeeccCCchHHHHH-----HHHHHHHHhhcCCchhHHHHHHHHHHHHhc
Q 007277 128 ALSILDTVAKVRSCLLMLDLECDKLVVE-----MFQHFLKVIRSNHPHFVFAAMETIMTLVID 185 (609)
Q Consensus 128 ~~yLLEsLA~VKS~VLmlDLe~ddLI~e-----LFk~FF~iVr~~hp~kV~~~M~dILs~VIe 185 (609)
.||+| .|++++=++. +.+.+ +|..+.++++...-++|......|+.-+++
T Consensus 215 ~Y~~l-------l~lWlLSF~~-~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 215 QYQAL-------LCLWLLSFEP-EIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHH-------HHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred HHHHH-------HHHHHHhcCH-HHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 44444 3666666652 12222 333444444444444444444444444443
No 32
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=41.03 E-value=3.3e+02 Score=26.26 Aligned_cols=103 Identities=12% Similarity=0.243 Sum_probs=59.0
Q ss_pred CccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhh-----hhhhhe---eec
Q 007277 74 DMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVA-----KVRSCL---LML 145 (609)
Q Consensus 74 DkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA-----~VKS~V---Lml 145 (609)
|+.||.-+..||+|+.--|- . .-+.-+..+| ..|.|++-.-=.+.+.+|..|. .+|.-+ ++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~--~ve~~~~~l~-------~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-N--LVEPYLPNLY-------KCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-H--HHHhHHHHHH-------HHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHH
Confidence 56799999999999997762 1 1122233333 3455654434444555555542 222211 111
Q ss_pred c-CCchHHHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhcc
Q 007277 146 D-LECDKLVVEMFQHFLKVIRSN-HPHFVFAAMETIMTLVIDE 186 (609)
Q Consensus 146 D-Le~ddLI~eLFk~FF~iVr~~-hp~kV~~~M~dILs~VIeE 186 (609)
- .|.+.-|..+=+.||.-+... .|..+...+.+++..+-..
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 1 356667777777777755544 6677777777777765553
No 33
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=40.16 E-value=5.8e+02 Score=28.58 Aligned_cols=123 Identities=15% Similarity=0.263 Sum_probs=79.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCC--h
Q 007277 23 NPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYD--D 100 (609)
Q Consensus 23 s~pis~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYt--D 100 (609)
.+|....-.|..|.+|-+.+. .|. .+....-+..+.-.|...-++-|--.-||..+.-=|-.|++-+. ..+.. .
T Consensus 223 ~p~p~l~~vL~fl~~Ll~~~~--~~~-~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~-~~~~~~~~ 298 (373)
T PF14911_consen 223 APPPRLASVLAFLQQLLKRLQ--RQN-ENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ-VGSSGEPR 298 (373)
T ss_pred CCCCcHHHHHHHHHHHHHhcC--ccc-chhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc-ccCcchHH
Confidence 356667778888888877765 221 11123334445555555556666677799998888888887766 22222 3
Q ss_pred hHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhh
Q 007277 101 ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIR 165 (609)
Q Consensus 101 dqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr 165 (609)
++|..+|.-|+.---. -|-.+||.+|++||... .+||..||-++=..++
T Consensus 299 ~~l~s~lrsfvqk~l~------~~t~~~f~~l~~vA~l~----------p~lV~~Lip~i~q~l~ 347 (373)
T PF14911_consen 299 EQLTSVLRSFVQKYLA------HYTYQYFQFLEKVAELD----------PQLVISLIPTIRQSLK 347 (373)
T ss_pred HHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhC----------HHHHHHHHHHHHHHHH
Confidence 7888888888875322 35568899999999986 4566666655544433
No 34
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=39.34 E-value=3.5e+02 Score=25.83 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHHHHhhcCCc---hhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc---CCC--CCchHHHHHHHH
Q 007277 149 CDKLVVEMFQHFLKVIRSNHP---HFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKE---NQD--VSPTSWKLGEKV 220 (609)
Q Consensus 149 ~ddLI~eLFk~FF~iVr~~hp---~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~---~k~--~~PaA~~LA~~V 220 (609)
....-++||+.++....+... ......+..|+...++ ..+|-|.|+-|+++. |++ ..--+|+|-.-+
T Consensus 18 ~~~~A~~iF~~Il~ymgd~~~~~~~~~~~l~~~i~~~~~~-----~~~LrDEiy~QLiKQtt~Np~~~s~~rgW~Ll~l~ 92 (144)
T smart00139 18 LQKEAVKIFKAILKFMGDLPLPKPDSHLDLVQFILQKGLA-----HPELRDEIYCQLIKQLTDNPSRQSEERGWELLYLC 92 (144)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 456778899988887654221 2233455566666665 356777777777643 222 223456664433
Q ss_pred Hh--hchhhHhHHHHHHHHhcCCCCcchHHHHHHHhcc
Q 007277 221 FT--KCAAKLKTNLKEAVQSRGIALDDYAEIVACICGS 256 (609)
Q Consensus 221 I~--~ca~KL~p~I~q~l~s~G~~ld~Y~~iv~sIcq~ 256 (609)
+. -++..|.+||..||+..+-..++ ..++..|+.
T Consensus 93 ~~~FpPS~~l~~yL~~~l~~~~~~~~~--~~~a~~c~~ 128 (144)
T smart00139 93 TSLFPPSERLLPYLLQFLSRRADQPSE--QGLAKYCLY 128 (144)
T ss_pred HhHcCChHHHHHHHHHHHHhcCCCccH--HHHHHHHHh
Confidence 32 46778999999999976443222 334556665
No 35
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=39.09 E-value=2.7e+02 Score=27.12 Aligned_cols=89 Identities=12% Similarity=0.229 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 007277 102 LMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMT 181 (609)
Q Consensus 102 qLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs 181 (609)
.|+++...|+.++. |..+.-......+|..|+..=.- .-+..+..++..++..+.. ....+.......|.
T Consensus 50 ~l~~~~~~i~~~l~---d~Rs~v~~~A~~~l~~l~~~l~~------~~~~~~~~~l~~Ll~~~~~-~~~~i~~~a~~~L~ 119 (228)
T PF12348_consen 50 CLRQLLDAIIKQLS---DLRSKVSKTACQLLSDLARQLGS------HFEPYADILLPPLLKKLGD-SKKFIREAANNALD 119 (228)
T ss_dssp HHH---HHHHH-S----HH---HHHHHHHHHHHHHHHHGG------GGHHHHHHHHHHHHHGGG----HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhH------hHHHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHH
Confidence 34444455555544 44566777778888888765111 1345566677777775543 23456666777777
Q ss_pred HHhcccCCCCHHHHHHHHHH
Q 007277 182 LVIDESEDVSWDLLRILLAS 201 (609)
Q Consensus 182 ~VIeEsE~Vp~eVLDvIL~~ 201 (609)
.++.-+. .+..++-.++..
T Consensus 120 ~i~~~~~-~~~~~~~~~l~~ 138 (228)
T PF12348_consen 120 AIIESCS-YSPKILLEILSQ 138 (228)
T ss_dssp HHHTTS--H--HHHHHHHHH
T ss_pred HHHHHCC-cHHHHHHHHHHH
Confidence 7777654 346663333333
No 36
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.99 E-value=5.4e+02 Score=32.61 Aligned_cols=158 Identities=16% Similarity=0.217 Sum_probs=88.0
Q ss_pred hhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeecc
Q 007277 67 NDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLD 146 (609)
Q Consensus 67 ~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlD 146 (609)
..+++-.-.-||--+|=-|++|.|---|+ +--++.+|+|.+.. .++.+.-.-.++||.+|.++..-.+.
T Consensus 86 ~~~~~E~~~~vr~k~~dviAeia~~~l~e------~WPell~~L~q~~~---S~~~~~rE~al~il~s~~~~~~~~~~-- 154 (1075)
T KOG2171|consen 86 EIIQSETEPSVRHKLADVIAEIARNDLPE------KWPELLQFLFQSTK---SPNPSLRESALLILSSLPETFGNTLQ-- 154 (1075)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHHhc---CCCcchhHHHHHHHHhhhhhhccccc--
Confidence 35566677789999999999999998887 55566666666653 34444444556777776655322111
Q ss_pred CCchHHHHHHHHHHHHHhhc-----------------CCc-------hhHHHHHHHHHHHHhcccCC-------------
Q 007277 147 LECDKLVVEMFQHFLKVIRS-----------------NHP-------HFVFAAMETIMTLVIDESED------------- 189 (609)
Q Consensus 147 Le~ddLI~eLFk~FF~iVr~-----------------~hp-------~kV~~~M~dILs~VIeEsE~------------- 189 (609)
+--+-+..||...+.-.+. ++. ..+...|..+|..+|+..+.
T Consensus 155 -~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El 233 (1075)
T KOG2171|consen 155 -PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIEL 233 (1075)
T ss_pred -hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHH
Confidence 1123445555444432111 011 11334455666666665544
Q ss_pred --CCHHHHHHHHHHhh------ccCCCCCchHHHHHHHHHhhchhhHhHHHHHHHH
Q 007277 190 --VSWDLLRILLASVR------KENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQ 237 (609)
Q Consensus 190 --Vp~eVLDvIL~~ll------~~~k~~~PaA~~LA~~VI~~ca~KL~p~I~q~l~ 237 (609)
..+.++...|.+++ -.+++-....+.+|-.+|..++.. .|..+....
T Consensus 234 ~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~-Ap~~~k~~~ 288 (1075)
T KOG2171|consen 234 LESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY-APAMCKKLA 288 (1075)
T ss_pred HhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh-hHHHhhhch
Confidence 12222222233322 245666778888888888877766 555444443
No 37
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=37.19 E-value=89 Score=26.26 Aligned_cols=66 Identities=17% Similarity=0.119 Sum_probs=41.3
Q ss_pred hhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHH-HHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhh
Q 007277 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMK-EFFQLAVSAFENLSHASGRYYMKALSILDTVAKVR 139 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLK-DIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VK 139 (609)
.+|.+.+..+|..++.||..+..-. +++....+. +++..++..|. +.+..........|.+|+...
T Consensus 14 ~~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~~i~~l~~~l~---~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 14 SLLSSSDENVQREAAWALSNLSAGN---NDNIQAVVEAGGLPALVQLLK---SEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCChHHHHHHHh---CCCHHHHHHHHHHHHHHccCc
Confidence 3667778899999999999887652 222222233 55666666543 444445566677777776543
No 38
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=36.22 E-value=94 Score=30.54 Aligned_cols=112 Identities=15% Similarity=0.224 Sum_probs=56.8
Q ss_pred chhhhhhHHhhhhhhcCCCCCCC--hhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCchHHHH
Q 007277 77 VRLSVTSCISEITRITAPDSPYD--DELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVV 154 (609)
Q Consensus 77 VRa~VAcCLaDILRIyAPDAPYt--DdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~ 154 (609)
||..++-||..|+.-..|.-|+- .++|.+||..--.. ....-....+|.+-+-||.. +.+-.
T Consensus 23 vR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~-~~~w~~~~~~F~~l~~LL~~---------------~~y~~ 86 (193)
T PF12612_consen 23 VREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEA-SLNWSSSSEYFPRLVKLLDL---------------PEYRY 86 (193)
T ss_pred HHHHHHHHHHHHhcCCCccccCCCcHHHHHHHccccccc-ccccCCHHHHHHHHHHHhcc---------------HHHHH
Confidence 88899999999995544433333 36777777643322 00111233456555544321 13333
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHhhcc
Q 007277 155 EMFQHFLKVIRSNHPHFVFAAMETIMTLVID---ESEDVSWDLLRILLASVRKE 205 (609)
Q Consensus 155 eLFk~FF~iVr~~hp~kV~~~M~dILs~VIe---EsE~Vp~eVLDvIL~~ll~~ 205 (609)
.++..+.-.+- ...+.+......-|...+. +.......++..|+.-|..+
T Consensus 87 ~ll~Glv~S~G-~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~ 139 (193)
T PF12612_consen 87 SLLSGLVVSAG-GLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKEN 139 (193)
T ss_pred HHHhHHHhcCC-CCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Confidence 34444443322 2445555555555555543 34445555566666555543
No 39
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=35.94 E-value=2.4e+02 Score=35.41 Aligned_cols=133 Identities=18% Similarity=0.181 Sum_probs=70.1
Q ss_pred cCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCch
Q 007277 71 RRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECD 150 (609)
Q Consensus 71 kHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~d 150 (609)
.-+|+.|+.|+-||++.+--| +|+. |.++.+.+.||. .|.+.| +-
T Consensus 658 ~W~D~e~~~yli~~~~k~w~i-----ky~~------i~~lA~llaGL~-----~y~~~f-------------------vi 702 (1128)
T KOG2051|consen 658 DWSDPEVKQYLISCFSKPWKI-----KYQN------IHALASLLAGLS-----SYHPEF-------------------VI 702 (1128)
T ss_pred ccccHHHHHHHHHHhhhhhcc-----cccc------HHHHHHHHHHHH-----hhchhh-------------------hh
Confidence 446777888888887776544 4433 223333344443 222222 23
Q ss_pred HHHHHHHHHHHHHhhcC--CchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCC-------c----hHHHHH
Q 007277 151 KLVVEMFQHFLKVIRSN--HPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVS-------P----TSWKLG 217 (609)
Q Consensus 151 dLI~eLFk~FF~iVr~~--hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~-------P----aA~~LA 217 (609)
.+|..+|+.++-.+.-+ +...=+.++.-.|+++.. .+.|...|+=-+|.+++.-...++ | --.+|+
T Consensus 703 ~VID~vlE~Ir~glEin~~~~nQrriA~aryL~ELyn-femvds~vIl~tLy~~i~~g~~~~~~~~~ldppddlFRirlV 781 (1128)
T KOG2051|consen 703 HVIDHVLEDIRPGLEINDYVSNQRRIALARYLGELYN-FEMVDSDVILNTLYHLISLGHFENLTPSALDPPDDLFRIRLV 781 (1128)
T ss_pred hhHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhcccccCCCCcccCCChHHHHHHHHH
Confidence 46667777776655432 233333444444544432 345556665555666654322222 2 235788
Q ss_pred HHHHhhchh--------hHhHHHHHHHHhc
Q 007277 218 EKVFTKCAA--------KLKTNLKEAVQSR 239 (609)
Q Consensus 218 ~~VI~~ca~--------KL~p~I~q~l~s~ 239 (609)
..|+.+|+. +--.++.-||+..
T Consensus 782 ~~lL~tc~~yf~rgs~kkkl~~fL~~fq~Y 811 (1128)
T KOG2051|consen 782 CMLLQTCGPYFTRGSTKKKLDQFLVAFQRY 811 (1128)
T ss_pred HHHHHHcccccccchhHHHHHHHHHHHHHH
Confidence 889999998 4444555555544
No 40
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=35.40 E-value=6.8e+02 Score=28.07 Aligned_cols=111 Identities=13% Similarity=0.163 Sum_probs=67.0
Q ss_pred CCchhHHHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHH
Q 007277 121 SGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLA 200 (609)
Q Consensus 121 ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~ 200 (609)
+...+.+.+.+|.++-+..+..+ .++.+..|-+..+.+.+..........-..++-.||. ...||.+-+..++.
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l-----~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~ 220 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYL-----DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIE 220 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHH
Confidence 44566677777777766655433 3455555555555554444444444444566666666 66888888887776
Q ss_pred Hhhc-cC-CCCCchHHHHHHHHHh-hchhhHhHHHHHHHH
Q 007277 201 SVRK-EN-QDVSPTSWKLGEKVFT-KCAAKLKTNLKEAVQ 237 (609)
Q Consensus 201 ~ll~-~~-k~~~PaA~~LA~~VI~-~ca~KL~p~I~q~l~ 237 (609)
-|=. .+ .+-...+|+..+.++. .++...=..++.+|.
T Consensus 221 vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~ 260 (464)
T PF11864_consen 221 VLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILR 260 (464)
T ss_pred HHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHHc
Confidence 5421 11 1334578888888884 445666666777773
No 41
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=33.45 E-value=2.5e+02 Score=29.59 Aligned_cols=106 Identities=14% Similarity=0.227 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcccCCC--CCchhHHHHHHHHHhh---------hhhhheeeccCCchHHHHHHHHHHHHHhhcCC---
Q 007277 103 MKEFFQLAVSAFENLSHA--SGRYYMKALSILDTVA---------KVRSCLLMLDLECDKLVVEMFQHFLKVIRSNH--- 168 (609)
Q Consensus 103 LKDIF~LfI~qf~~LaD~--ssp~y~q~~yLLEsLA---------~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~h--- 168 (609)
=+|||..+.+-|.+|.+| .+.+|.-+..|++-+- .++.|++++.=+.-+.+..|..-..+++..+.
T Consensus 105 e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va~~~~~~L 184 (235)
T cd04405 105 KRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAKNDMPRL 184 (235)
T ss_pred HHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 348888888888888775 5667887777777544 56777777766666777777777776666542
Q ss_pred ch--hHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCC
Q 007277 169 PH--FVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQD 208 (609)
Q Consensus 169 p~--kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~ 208 (609)
.+ .-+..|..+.+..|--+..++....+.|+..++.+.+.
T Consensus 185 ~~~~~nR~~v~~~Fs~~ii~~~~l~~~~~~~LV~Fmmd~~~~ 226 (235)
T cd04405 185 HKEIENRMLVKQTFSRAILCSKDLDEGLADLLVLFLMDHHQD 226 (235)
T ss_pred ccccchHHHHHHHhhhHhcCccccCHHHHHHHHHHHHHcchh
Confidence 12 22346667777777777788877788888888777654
No 42
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=32.94 E-value=5.3e+02 Score=26.43 Aligned_cols=172 Identities=13% Similarity=0.106 Sum_probs=86.0
Q ss_pred hhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCC--CCCchhHHH
Q 007277 51 RSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSH--ASGRYYMKA 128 (609)
Q Consensus 51 ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD--~ssp~y~q~ 128 (609)
..+++.+..+...+++. +.+.+.|||+.+.=.+--+.=++.|..+.++..... ..--.|+. +++|+
T Consensus 35 ~~~W~~~~~lK~~Il~~--~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~------~~d~SL~~vp~~Hp~---- 102 (239)
T PF11935_consen 35 EQLWESMNELKDRILSL--WDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGS------PNDFSLSSVPPNHPL---- 102 (239)
T ss_dssp HHHHHHHHHHHHHHHHG--GGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGG------TTS--GGGS-TT-SS----
T ss_pred HHHHHHHHHHHHHHHHH--hcCCCchHHHHHHHHHHHHHHhcCCCCCCCcccccc------ccCCCHHHcCCCCCc----
Confidence 46788888888888887 888899999999888888888888887776543000 00001221 12222
Q ss_pred HHHHHHhhhhhhheeeccCC--chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccC
Q 007277 129 LSILDTVAKVRSCLLMLDLE--CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206 (609)
Q Consensus 129 ~yLLEsLA~VKS~VLmlDLe--~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~ 206 (609)
+-.-.|+ +..|+..|+..|+... .+..+...+.+-|+.|+--=...-.-|+.+|+..-....
T Consensus 103 -------------l~~~~Le~Ea~~lL~~Ll~~l~~~~---i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~~~~~~ 166 (239)
T PF11935_consen 103 -------------LNPQQLEAEANGLLDRLLDVLQSPH---ISSPLLTAIINSLSNIAKQRPQFMSRILPALLSFNPNLS 166 (239)
T ss_dssp -------------S-HHHHHHHHHHHHHHHHHHHC-TT-----HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHS--
T ss_pred -------------CCHHHHHHHHHHHHHHHHHHHhhcc---cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcccc
Confidence 2222332 5566666666666422 355555555555666665544444455555554322110
Q ss_pred CCCCchHHHHHHHHHhhchhhHhHHHHHHHHhcCCCCcchHHHHHHHhc
Q 007277 207 QDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICG 255 (609)
Q Consensus 207 k~~~PaA~~LA~~VI~~ca~KL~p~I~q~l~s~G~~ld~Y~~iv~sIcq 255 (609)
....+.-+.++.+ .....|+-.+..+++.-... .|+.-+...+.
T Consensus 167 ~~~~~~~~~~~v~---sv~k~lk~~l~~llk~~~~~--~~~~~i~~~L~ 210 (239)
T PF11935_consen 167 PMQPPTLSKLQVK---SVEKTLKIFLLHLLKHPASS--PFQGRITQALT 210 (239)
T ss_dssp ----TTCSHHHHH---HHHHHHHHHHHHHHTSGGGG--GGHHHHHHHHH
T ss_pred ccCCccchHHHHH---HHHHHHHHHHHHHHCCCCch--hhHHHHHHHHH
Confidence 0112222233322 22234555666666633222 66665555554
No 43
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=32.94 E-value=5.7e+02 Score=30.77 Aligned_cols=117 Identities=15% Similarity=0.269 Sum_probs=61.2
Q ss_pred chHHHHHHHHHHHHHhhcC------------------CchhHHHHHHHHHHHHhccc----CCCCHHHHHHHHHHhhccC
Q 007277 149 CDKLVVEMFQHFLKVIRSN------------------HPHFVFAAMETIMTLVIDES----EDVSWDLLRILLASVRKEN 206 (609)
Q Consensus 149 ~ddLI~eLFk~FF~iVr~~------------------hp~kV~~~M~dILs~VIeEs----E~Vp~eVLDvIL~~ll~~~ 206 (609)
|-+-+.+|.-.||+.+... .-..+.+.+.++|..||--. +.+...++..+|.-+-+..
T Consensus 531 ~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~ 610 (858)
T COG5215 531 CPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTK 610 (858)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccC
Confidence 4456667777777766631 12335555666677777643 4566666666555554443
Q ss_pred CCCC-----chHHHHHH---HHHhhchhhHhHHHHHHHH-------------------hcCCCCcchHHHH-HHHhccCC
Q 007277 207 QDVS-----PTSWKLGE---KVFTKCAAKLKTNLKEAVQ-------------------SRGIALDDYAEIV-ACICGSDD 258 (609)
Q Consensus 207 k~~~-----PaA~~LA~---~VI~~ca~KL~p~I~q~l~-------------------s~G~~ld~Y~~iv-~sIcq~~s 258 (609)
+.+. -+--.|+. +=+..-+.++-||+...++ ++|..+..|.+++ .++.|+-+
T Consensus 611 ~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~ls 690 (858)
T COG5215 611 PTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLS 690 (858)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 3221 00111221 1134455667788776665 2344567788854 44556544
Q ss_pred CCC-CCCC
Q 007277 259 ENP-QHGH 265 (609)
Q Consensus 259 ~~~-~~~~ 265 (609)
+.. .++.
T Consensus 691 s~~~~R~l 698 (858)
T COG5215 691 SEATHRDL 698 (858)
T ss_pred Chhhcccc
Confidence 443 4444
No 44
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=32.85 E-value=3.1e+02 Score=27.85 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHH
Q 007277 33 NLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVS 112 (609)
Q Consensus 33 kRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~ 112 (609)
+-|+.|..+|+.-.+... ...+..+-+.|-= ++-..--+-||--+|..|++|++.+.++. .---=++-.|.-+.+
T Consensus 19 ~al~~l~~~l~~~~~~~~---~~~~~kLWKGLfy-~mWmsDkpl~Q~~la~~la~l~~~~~~~~-~~~~f~~~f~~tm~r 93 (217)
T PF05997_consen 19 RALKSLRKWLSKRSQLLT---ELDMLKLWKGLFY-CMWMSDKPLVQEELAEELASLIHSFPSEK-AALLFLKAFWETMRR 93 (217)
T ss_pred HHHHHHHHHHHhccccCC---HHHHHHHHHHHHH-HHHhcCCchhHHHHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHH
Confidence 345577777776655421 2234445555432 22223335688899999999999987665 001223444444445
Q ss_pred HhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCC-chHHHHHHHHHHHHHhh-c-C-CchhHHHHHHHHHHHHhccc-
Q 007277 113 AFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFLKVIR-S-N-HPHFVFAAMETIMTLVIDES- 187 (609)
Q Consensus 113 qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe-~ddLI~eLFk~FF~iVr-~-~-hp~kV~~~M~dILs~VIeEs- 187 (609)
.+.+|.. +=-.-||+|-+.---.++.++-.-. ..+++.++.+.+...+= . + .|.-+..++.+|...=++..
T Consensus 94 EW~~ID~----~R~DKf~~LvR~~~~~~~~~l~~~~w~~~~v~~~~~~l~~~~l~~~~~~p~Gl~~H~~Di~ldEL~k~~ 169 (217)
T PF05997_consen 94 EWDGIDR----LRMDKFLMLVRRFLRQSFRFLKKNGWDKELVEEFNEILSETPLNPNDQVPNGLRYHFADIFLDELEKVG 169 (217)
T ss_pred HHcccHH----HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccCCCcCCCchhHHHHHHHHHHHHHHHHh
Confidence 5556542 2222356665555555555555544 44555555555555321 1 1 44556666665544332221
Q ss_pred ---------CCCCHHHHHHHHHHhh
Q 007277 188 ---------EDVSWDLLRILLASVR 203 (609)
Q Consensus 188 ---------E~Vp~eVLDvIL~~ll 203 (609)
+.++.+.+..+|..|.
T Consensus 170 ~~~~~~~e~~~~~~~~~~~ll~PF~ 194 (217)
T PF05997_consen 170 GSESEDEEEENLPAEPLLLLLEPFV 194 (217)
T ss_pred cccccchhcccCCHHHHHHHHHHHH
Confidence 1255666666665554
No 45
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.82 E-value=3e+02 Score=28.36 Aligned_cols=101 Identities=10% Similarity=0.084 Sum_probs=68.7
Q ss_pred HHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhH-H------HHHHHHHHHHhcccCCCCCchhH
Q 007277 54 RDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDEL-M------KEFFQLAVSAFENLSHASGRYYM 126 (609)
Q Consensus 54 ~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdq-L------KDIF~LfI~qf~~LaD~ssp~y~ 126 (609)
-.....++.+|+...+=.+....-.+++++||+=|--==.+|.-|+.+. + -.||..|=+-+.. . .
T Consensus 32 Fr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~E~~~----~----~ 103 (200)
T cd00280 32 FRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVLESIEKEFSL----P----E 103 (200)
T ss_pred HHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHHHHHHHhcCC----c----H
Confidence 4566788999998877777778889999999987776677889998543 2 2455555444431 1 1
Q ss_pred HHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHH
Q 007277 127 KALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLK 162 (609)
Q Consensus 127 q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~ 162 (609)
.-+-..+.|-.+..+++|..-.-.+.-.++|+.+|.
T Consensus 104 ~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 104 TLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 223445556666666676666666777778888886
No 46
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=32.65 E-value=6.2e+02 Score=26.76 Aligned_cols=95 Identities=11% Similarity=0.114 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHH
Q 007277 27 PVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEF 106 (609)
Q Consensus 27 s~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDI 106 (609)
+-..|...|..+..++..++.+.++. +.+.++. =|..|...||-....|+.++|+ .+.-.-....+..+
T Consensus 36 nE~aL~~~l~al~~~~~~~~~~~~~~-------~~~~~~k--Gl~~kk~~vR~~w~~~~~~~~~--~~~~~~~~~~~~~~ 104 (339)
T PF12074_consen 36 NEAALSALLSALFKHLFFLSSELPKK-------VVDAFKK--GLKDKKPPVRRAWLLCLGEALW--ESPNSDSLKFAEPF 104 (339)
T ss_pred CHHHHHHHHHHHHHHHHHhCcCCCHH-------HHHHHHH--HhcCCCCcHHHHHHHHHHHHHh--hccCchHHHHHHHH
Confidence 44557777778888888774433332 2222222 3455556699999999999999 11111112456666
Q ss_pred HHHHHHHhccc-----CC-CCCchhHHHHHHH
Q 007277 107 FQLAVSAFENL-----SH-ASGRYYMKALSIL 132 (609)
Q Consensus 107 F~LfI~qf~~L-----aD-~ssp~y~q~~yLL 132 (609)
...++..++.- .. ..+....-|++++
T Consensus 105 ~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~ 136 (339)
T PF12074_consen 105 LPKLLQSLKEASANPLQSAQNGELVGAYVLLA 136 (339)
T ss_pred HHHHHHHHHHHHhCCCCccccccHHHHHHHHH
Confidence 66666665422 22 2344566666666
No 47
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=32.32 E-value=6.5e+02 Score=26.92 Aligned_cols=81 Identities=17% Similarity=0.273 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCcc------chhhhhhHHhhhhhhcCCCCCCChh
Q 007277 28 VDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMD------VRLSVTSCISEITRITAPDSPYDDE 101 (609)
Q Consensus 28 ~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkd------VRa~VAcCLaDILRIyAPDAPYtDd 101 (609)
-.|.|..+..+-..|...-++.+..+.+++-..-..+++..+..-++-- +|+.+..|..=++.+ +.+
T Consensus 89 ~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~l-------p~~ 161 (319)
T PF08767_consen 89 EPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQL-------PPE 161 (319)
T ss_dssp -HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS--------HH
T ss_pred ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcC-------CHH
Confidence 5678888888888888876666666677777777777877766554422 344555565555553 455
Q ss_pred HHHHHHHHHHHHhc
Q 007277 102 LMKEFFQLAVSAFE 115 (609)
Q Consensus 102 qLKDIF~LfI~qf~ 115 (609)
+.+.++..++-.+.
T Consensus 162 ~f~~~idsi~wg~k 175 (319)
T PF08767_consen 162 QFKLVIDSIVWGFK 175 (319)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 55555555544443
No 48
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=32.28 E-value=7.1e+02 Score=27.32 Aligned_cols=162 Identities=14% Similarity=0.154 Sum_probs=83.1
Q ss_pred CccchhhhhhHHhhhhhhcCCCCCCChh-HHHH--HHHHHHHHhcccCCCCCchhHHHHHHHHHhhhh-hhheeeccCC-
Q 007277 74 DMDVRLSVTSCISEITRITAPDSPYDDE-LMKE--FFQLAVSAFENLSHASGRYYMKALSILDTVAKV-RSCLLMLDLE- 148 (609)
Q Consensus 74 DkdVRa~VAcCLaDILRIyAPDAPYtDd-qLKD--IF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~V-KS~VLmlDLe- 148 (609)
+.+.-..+.-||..++.-..-+.++.+. ...+ |...+++.+-...+.+.. ....+|+.++.+ +.++-.++.+
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~---~~~~~L~~~~~l~~~iv~~l~~~~ 132 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD---LDDRVLELLSRLINLIVRSLSPEK 132 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc---cchHHHHHHHHHHHHHHHhCCHHH
Confidence 3344444455566666555555534332 2222 444444443333322222 556778888887 8888888887
Q ss_pred chHHHHHHHHHHH----------HHhhc-CCchhHHHHHHHHHHHHhcccCCCC--HHHHHHHHHHhhccC-CCCCchHH
Q 007277 149 CDKLVVEMFQHFL----------KVIRS-NHPHFVFAAMETIMTLVIDESEDVS--WDLLRILLASVRKEN-QDVSPTSW 214 (609)
Q Consensus 149 ~ddLI~eLFk~FF----------~iVr~-~hp~kV~~~M~dILs~VIeEsE~Vp--~eVLDvIL~~ll~~~-k~~~PaA~ 214 (609)
.+.++.++|..|+ ..... ..+......+..|+..+=-+. .+| .++++-++.-..... ......+.
T Consensus 133 q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~~ 211 (415)
T PF12460_consen 133 QQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDV-SLPDLEELLQSLLNLALSSEDEFSRLAAL 211 (415)
T ss_pred HHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCccc-CccCHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 7788999999998 11100 133344344444444332222 222 234444444433332 22234455
Q ss_pred HHHHHHHhhc--hhhHhHHHHHHHHhc
Q 007277 215 KLGEKVFTKC--AAKLKTNLKEAVQSR 239 (609)
Q Consensus 215 ~LA~~VI~~c--a~KL~p~I~q~l~s~ 239 (609)
++..-+++++ .+.+..++..+++..
T Consensus 212 ~~la~LvNK~~~~~~l~~~l~~~~~~~ 238 (415)
T PF12460_consen 212 QLLASLVNKWPDDDDLDEFLDSLLQSI 238 (415)
T ss_pred HHHHHHHcCCCChhhHHHHHHHHHhhh
Confidence 5555677773 444666666665543
No 49
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=31.65 E-value=1.1e+02 Score=25.31 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=41.2
Q ss_pred HHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccC
Q 007277 10 LEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRR 72 (609)
Q Consensus 10 le~~l~~~G~kLis~pis~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkH 72 (609)
+.+-|..+|.+---.|.+.+| +.++-.+-.....-..+..+++. ..+..-|.++.||-.
T Consensus 3 a~~~l~~Fa~rAfRRp~~~~e-~~~~~~~~~~~~~~g~~~~~a~~---~~l~aiL~SP~FLY~ 61 (64)
T PF07637_consen 3 AREILRRFARRAFRRPLTDEE-VDRYLALYDSARAQGEDFEEALK---EALQAILCSPSFLYR 61 (64)
T ss_pred HHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHcCcchhcc
Confidence 456788899999999999999 77777776666554554444444 345556888888743
No 50
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=31.45 E-value=26 Score=25.80 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.4
Q ss_pred hhccCCCccchhhhhhHHhhhhh
Q 007277 68 DLLRRSDMDVRLSVTSCISEITR 90 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILR 90 (609)
.||+|.|.+|+-.++.||..|.|
T Consensus 19 ~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 19 QLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhC
Confidence 57889999999999999998865
No 51
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=31.43 E-value=6.3e+02 Score=29.49 Aligned_cols=124 Identities=19% Similarity=0.273 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcccCCchhh-HHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHH
Q 007277 26 SPVDEVINLLDKVEHLLANVEQAPSRSM-RDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMK 104 (609)
Q Consensus 26 is~dELLkRLkkL~~eLs~ldQ~~~ds~-~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLK 104 (609)
.+.++--..|..|.+.|.+ .|+-+..+ ++-...+...+..... ..+.-.+--||-+|-|.+-| |
T Consensus 36 ~~~~~~~~~l~~L~~~L~~-n~~l~~~igWDL~~~l~~~~~~~~~-----~~~~~~~~~~l~~la~~gnP---------k 100 (633)
T PF08568_consen 36 YSNEEKEEFLPELLEILQD-NQELTYEIGWDLPKLLLPFLPSSEI-----SPCVDCCMKCLEELARLGNP---------K 100 (633)
T ss_pred cchhhHHHHHHHHHHHHhh-CHHHHHHccccCHHHHHHHhhhhhc-----chHHHHHHHHHHHHHHhCCH---------H
Confidence 4445556666666666643 23222211 2223334333333333 44566667778888888766 6
Q ss_pred HHHHHHHHHhcccCCCC---------------CchhHHHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCc
Q 007277 105 EFFQLAVSAFENLSHAS---------------GRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHP 169 (609)
Q Consensus 105 DIF~LfI~qf~~LaD~s---------------sp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp 169 (609)
++|--+..++..|...+ ...|.-.|| ++.+|.++.+.-+...+|
T Consensus 101 E~~l~~~E~l~~l~~ed~~~~~~~~~~~~~~~~~~~~~kf~---------------------~Ll~~l~~~l~ri~t~~p 159 (633)
T PF08568_consen 101 ELLLKVCELLEELSPEDEDDEEDDESIERNQIEEPFDLKFY---------------------CLLELLQIVLKRIQTKYP 159 (633)
T ss_pred HHHHHHHHHHHhcccccccccccccccccccchhhhHHHHH---------------------HHHHHHHHHHHHhcccch
Confidence 77777777777665310 111111111 256777777777777788
Q ss_pred hh-HHHHHHHHHHHHhc
Q 007277 170 HF-VFAAMETIMTLVID 185 (609)
Q Consensus 170 ~k-V~~~M~dILs~VIe 185 (609)
.. +..++..|+..+=.
T Consensus 160 s~Fl~~~l~~i~~~~~~ 176 (633)
T PF08568_consen 160 SRFLAMALSAILNFLKN 176 (633)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 77 66666666665544
No 52
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=30.89 E-value=1.3e+02 Score=25.75 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=24.4
Q ss_pred chhhhhhHHhhhhhhcCCCCCCChhHHHH
Q 007277 77 VRLSVTSCISEITRITAPDSPYDDELMKE 105 (609)
Q Consensus 77 VRa~VAcCLaDILRIyAPDAPYtDdqLKD 105 (609)
+...+.-||..++++.+|=.|+..+++-+
T Consensus 87 ~~~~~~~~l~~~~~lL~P~~P~~aeei~~ 115 (117)
T cd07958 87 HAAVLREALETLVLLLAPFAPHIAEELWE 115 (117)
T ss_pred hHHHHHHHHHHHHHHHcccchHHHHHHHh
Confidence 66677788999999999999999887643
No 53
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=30.10 E-value=1.3e+02 Score=28.09 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=47.8
Q ss_pred hcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhhHhHHH
Q 007277 165 RSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNL 232 (609)
Q Consensus 165 r~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~I 232 (609)
++..+..=...+..|. .+|...+.-|.+.+..|...|...++...--|..|.+.++.+|+..+...|
T Consensus 10 s~~l~~~dw~~~l~ic-D~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev 76 (133)
T smart00288 10 SPSLLEEDWELILEIC-DLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEV 76 (133)
T ss_pred CcCCCCcCHHHHHHHH-HHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3344433344455553 455666789999999999999977776666777788888899998886555
No 54
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=29.57 E-value=3.4e+02 Score=29.37 Aligned_cols=41 Identities=17% Similarity=0.457 Sum_probs=31.6
Q ss_pred CCChhHHHHHHH-HHHHHhcccCCCCCchhHHHHHHHHHhhhh
Q 007277 97 PYDDELMKEFFQ-LAVSAFENLSHASGRYYMKALSILDTVAKV 138 (609)
Q Consensus 97 PYtDdqLKDIF~-LfI~qf~~LaD~ssp~y~q~~yLLEsLA~V 138 (609)
|-.. .|+-+++ |++.-|+||.|.++.+|.+-+.||+.+...
T Consensus 127 pL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~ 168 (307)
T PF04118_consen 127 PLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEA 168 (307)
T ss_pred CccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHh
Confidence 4444 5555555 555669999999999999999999999754
No 55
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.22 E-value=5.4e+02 Score=31.60 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=83.3
Q ss_pred hhhhhhh---ccCCCccchhhhhhHHhhhhhhcCCCCCCC--hhHHHHHHHHHHHHhc------------ccCC------
Q 007277 63 GLITNDL---LRRSDMDVRLSVTSCISEITRITAPDSPYD--DELMKEFFQLAVSAFE------------NLSH------ 119 (609)
Q Consensus 63 ~LVs~~L---LkHkDkdVRa~VAcCLaDILRIyAPDAPYt--DdqLKDIF~LfI~qf~------------~LaD------ 119 (609)
-|.++.| |+-.|..||.-+|--+.|.+=|--||+--. |..|..=|.++-+.|+ |+..
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 3444444 566899999999999999999999998332 2233333333322221 0000
Q ss_pred ---CCCchhHHHHHHHHH----------hhhhhhheeeccCC-chHHHHHHHHHHHHHhhc---CCchhHHHHHHHHHHH
Q 007277 120 ---ASGRYYMKALSILDT----------VAKVRSCLLMLDLE-CDKLVVEMFQHFLKVIRS---NHPHFVFAAMETIMTL 182 (609)
Q Consensus 120 ---~ssp~y~q~~yLLEs----------LA~VKS~VLmlDLe-~ddLI~eLFk~FF~iVr~---~hp~kV~~~M~dILs~ 182 (609)
|..-.-.--.||... ++.++.+..|+|.+ |..+ |+..+-.++. +.++.|+.+|.+|+..
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~----le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPL----LEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhH----HHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 000001111233332 34445555677776 5444 4444444443 6678899999999877
Q ss_pred Hhcc-----cCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhc
Q 007277 183 VIDE-----SEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKC 224 (609)
Q Consensus 183 VIeE-----sE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~c 224 (609)
|=+- -..+|. |.||..|-..+ .|.+++++.-|+..|
T Consensus 329 ik~vra~~f~~I~~~---d~~l~~L~~d~---~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 329 IKAVRAAKFWKICPM---DHILVRLETDS---RPVSRRLVSLIFNSF 369 (1005)
T ss_pred HHhhhhhhhhccccH---HHHHHHHhccc---cHHHHHHHHHHHHhh
Confidence 5432 233554 45555554433 456666665555443
No 56
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=26.82 E-value=1.3e+02 Score=26.88 Aligned_cols=59 Identities=14% Similarity=0.243 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhhHhHHHH
Q 007277 174 AAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLK 233 (609)
Q Consensus 174 ~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~I~ 233 (609)
..|..|...+ .+...-+.++++.|...+...+....--|-.|-+.++.+|+..+..+++
T Consensus 19 ~~i~~i~d~~-~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~ 77 (115)
T cd00197 19 PLIMEICDLI-NETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVA 77 (115)
T ss_pred HHHHHHHHHH-HCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 4455554444 4556678889999999987665444445666677888888888776654
No 57
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=26.49 E-value=37 Score=32.47 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=23.2
Q ss_pred hhhhhHHhhhhhhcCCCCCCChhHHHH
Q 007277 79 LSVTSCISEITRITAPDSPYDDELMKE 105 (609)
Q Consensus 79 a~VAcCLaDILRIyAPDAPYtDdqLKD 105 (609)
..+..||..++|+.||=+||..+++-.
T Consensus 112 ~~l~~~l~~ll~ll~P~~P~~aEElw~ 138 (183)
T cd07961 112 ATLYEVLLTLSRLMAPFTPFITEEIYQ 138 (183)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 467789999999999999999987654
No 58
>KOG4338 consensus Predicted lipoprotein [Lipid transport and metabolism]
Probab=26.12 E-value=4.6e+02 Score=34.61 Aligned_cols=173 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhh
Q 007277 8 IELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISE 87 (609)
Q Consensus 8 ~ele~~l~~~G~kLis~pis~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaD 87 (609)
+-||+|+.+-|-.=..|+.....+-..|+.|..+-..+++.+..-... .+.-|+.
T Consensus 319 e~Le~q~~~~~d~a~~pq~~e~~~~~kl~~l~s~a~~i~~~e~~~~~e-------------------------~~~tla~ 373 (1680)
T KOG4338|consen 319 EKLETQLLKPGDEAESPQLTESTSEQKLDLLESIAEQIEETENNEPVE-------------------------TRHTLAR 373 (1680)
T ss_pred HHHHHHHhcCCChhcCcccccchHHHHHHHHHHHHHHHhhhccccchh-------------------------HHHHHHH
Q ss_pred hhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcC
Q 007277 88 ITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSN 167 (609)
Q Consensus 88 ILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~ 167 (609)
+.|+ +|++ +.+||+.||.+. |-+++.-...-+.++|.++...+-..
T Consensus 374 ~Vkl-~~e~--s~dqLk~i~r~~-------------------------------ve~~~~~~~~~ir~i~d~~l~~~gTk 419 (1680)
T KOG4338|consen 374 LVKL-LREP--SHDQLKKIYRLL-------------------------------VETCYVKAPEKIRELIDVALALAGTK 419 (1680)
T ss_pred HHHH-hccC--CHHHHHHHHHHH-------------------------------HhhhhccchHHHHHHHHHHHHHhhhh
Q ss_pred CchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchh--hHhHHHHHHHHhcCCCCcc
Q 007277 168 HPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAA--KLKTNLKEAVQSRGIALDD 245 (609)
Q Consensus 168 hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~--KL~p~I~q~l~s~G~~ld~ 245 (609)
..-.+..+| ...++.+..+++.-+.--....-++..+|+.+|+.|.. .+.++-...+++. ...
T Consensus 420 ~ti~~~~~~------------v~~~k~itP~~as~ik~lv~~pfps~~ia~~liQ~~esf~~i~~d~~~lrQaa---~l~ 484 (1680)
T KOG4338|consen 420 NTIQHITHH------------VLNQKSITPLEASRIKLLVEMPFPSLTIAEALIQLLESFHPISEDAEVLRQAA---WLA 484 (1680)
T ss_pred HHHHHHHHH------------HhhhhhcchhHhhhhhhhhcCCCchHHHHHHHHHHHHhhcccCcccHHHHHHH---HHh
Q ss_pred hHHHHHHHh
Q 007277 246 YAEIVACIC 254 (609)
Q Consensus 246 Y~~iv~sIc 254 (609)
|..+|.-+|
T Consensus 485 a~t~V~~v~ 493 (1680)
T KOG4338|consen 485 AGTAVRGVF 493 (1680)
T ss_pred hchHhhhhh
No 59
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=25.88 E-value=7.9e+02 Score=27.55 Aligned_cols=157 Identities=18% Similarity=0.235 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHhcccCCCCCchhHHHHH-HHH----Hhhhhhhhee--------eccCCchHHHHHHHHHHHHHhh--
Q 007277 101 ELMKEFFQLAVSAFENLSHASGRYYMKALS-ILD----TVAKVRSCLL--------MLDLECDKLVVEMFQHFLKVIR-- 165 (609)
Q Consensus 101 dqLKDIF~LfI~qf~~LaD~ssp~y~q~~y-LLE----sLA~VKS~VL--------mlDLe~ddLI~eLFk~FF~iVr-- 165 (609)
.-++++|-+|+.-+..+.-..++|-.+..- |+. .+.--.+... ..+-+ -..++.+.+++.++
T Consensus 139 ~ai~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~---~~~~l~~~il~~i~~~ 215 (373)
T PF14911_consen 139 QAIRKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTP---RNEELRKFILQVIRSN 215 (373)
T ss_pred HHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhh---hhhHHHHHHHHHHHHH
Confidence 458999999999998888888887666531 111 1111111111 12221 22233333333333
Q ss_pred -----cCCchhHHHHHHHHHHHHhcc----cCCCCHHHHHHHH----HHhhccC--CCCCchHHHHHHHHHhhch-----
Q 007277 166 -----SNHPHFVFAAMETIMTLVIDE----SEDVSWDLLRILL----ASVRKEN--QDVSPTSWKLGEKVFTKCA----- 225 (609)
Q Consensus 166 -----~~hp~kV~~~M~dILs~VIeE----sE~Vp~eVLDvIL----~~ll~~~--k~~~PaA~~LA~~VI~~ca----- 225 (609)
+.-|+.-......++.+++.+ ....-..+++.++ ..+.--+ ...-..|-.+-..+++.|.
T Consensus 216 fl~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~ 295 (373)
T PF14911_consen 216 FLEFKGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSG 295 (373)
T ss_pred HhcCCCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcc
Confidence 233333334455556666666 2333333333333 3333222 1122333334444556666
Q ss_pred ---hhHhHHHHHHHHhcCC-CCcchHHHHHHHhccCCCC
Q 007277 226 ---AKLKTNLKEAVQSRGI-ALDDYAEIVACICGSDDEN 260 (609)
Q Consensus 226 ---~KL~p~I~q~l~s~G~-~ld~Y~~iv~sIcq~~s~~ 260 (609)
+.+...+++|.+..+. -.-.|..++.+|+..+.+.
T Consensus 296 ~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~l 334 (373)
T PF14911_consen 296 EPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQL 334 (373)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHH
Confidence 4567777777776533 2344778888888777654
No 60
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=25.87 E-value=7.4e+02 Score=28.14 Aligned_cols=115 Identities=16% Similarity=0.218 Sum_probs=65.1
Q ss_pred hhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhhe--e--
Q 007277 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCL--L-- 143 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~V--L-- 143 (609)
..|.|.++.||.+++-.|..+.|- ++.-..--.=.+||.+++..+ .|++...-.....+|..|+...... +
T Consensus 84 ~gL~h~~~~Vr~l~l~~l~~~~~~--~~~~~~~~~~~~l~~~i~~~L---~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~ 158 (503)
T PF10508_consen 84 RGLTHPSPKVRRLALKQLGRIARH--SEGAAQLLVDNELLPLIIQCL---RDPDLSVAKAAIKALKKLASHPEGLEQLFD 158 (503)
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcC--CHHHHHHhcCccHHHHHHHHH---cCCcHHHHHHHHHHHHHHhCCchhHHHHhC
Confidence 356799999999987776555543 111000000124555555554 6778778888888888888764333 1
Q ss_pred ---eccCC------chHHHHHHHHHHHHHhhcCCchhHHHHHHH--HHHHHhcccCC
Q 007277 144 ---MLDLE------CDKLVVEMFQHFLKVIRSNHPHFVFAAMET--IMTLVIDESED 189 (609)
Q Consensus 144 ---mlDLe------~ddLI~eLFk~FF~iVr~~hp~kV~~~M~d--ILs~VIeEsE~ 189 (609)
+.+|. .+.+-..++..+-.+. .++......+.+ ++..++.|.+.
T Consensus 159 ~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~--~~S~~~~~~~~~sgll~~ll~eL~~ 213 (503)
T PF10508_consen 159 SNLLSKLKSLMSQSSDIVRCRVYELLVEIA--SHSPEAAEAVVNSGLLDLLLKELDS 213 (503)
T ss_pred cchHHHHHHHHhccCHHHHHHHHHHHHHHH--hcCHHHHHHHHhccHHHHHHHHhcC
Confidence 11111 1223334444444332 355666666664 78888877766
No 61
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=25.61 E-value=9.6e+02 Score=29.03 Aligned_cols=222 Identities=13% Similarity=0.254 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHH
Q 007277 33 NLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVS 112 (609)
Q Consensus 33 kRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~ 112 (609)
.|..-|.+.+...+.....-+..-|..+...|+.-.=+.--+...|+..-..|..+. .|+||+ -.+-+-.|+.++..
T Consensus 472 w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli-~~~~d~--V~~~~a~~~~~~~~ 548 (858)
T COG5215 472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLI-LICPDA--VSDILAGFYDYTSK 548 (858)
T ss_pred HHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH-hhcchh--HHHHHHHHHHHHHH
Confidence 445566666666665444445677778888888776666666667777777777776 457775 23445566666654
Q ss_pred Hhc-------ccCCCCCc-----hhHHHHHHHHHhhhhhhheeeccCC-chHHHHHHHHHHHHHhhcC-CchhHHHHHHH
Q 007277 113 AFE-------NLSHASGR-----YYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFLKVIRSN-HPHFVFAAMET 178 (609)
Q Consensus 113 qf~-------~LaD~ssp-----~y~q~~yLLEsLA~VKS~VLmlDLe-~ddLI~eLFk~FF~iVr~~-hp~kV~~~M~d 178 (609)
-|. ..-++++. .-..|..+|+.+-..+- -|++ ..|.+.+||=.++....+. .-..|+..+..
T Consensus 549 kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~----~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsa 624 (858)
T COG5215 549 KLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRR----RDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISA 624 (858)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHH
Confidence 432 22222222 23455666666543321 3665 4565555554445443332 23567788888
Q ss_pred HHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchh------------------------hHhHHHHH
Q 007277 179 IMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAA------------------------KLKTNLKE 234 (609)
Q Consensus 179 ILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~------------------------KL~p~I~q 234 (609)
+++.+=+-.+.--...+-.++..+...+.-....|-.|.-++-+.-.. .|+|.|..
T Consensus 625 l~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLS 704 (858)
T COG5215 625 LSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILS 704 (858)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHH
Confidence 777655544432222222222222111111111222222222222222 34555555
Q ss_pred HHHhc----CCCCcchHHHHHHHhccCCCCC
Q 007277 235 AVQSR----GIALDDYAEIVACICGSDDENP 261 (609)
Q Consensus 235 ~l~s~----G~~ld~Y~~iv~sIcq~~s~~~ 261 (609)
.|... |-.+..|-++|-.+||..++.-
T Consensus 705 vFgDIAlaiga~F~~YL~~im~L~qqas~~~ 735 (858)
T COG5215 705 VFGDIALAIGANFESYLDMIMMLFQQASELD 735 (858)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccC
Confidence 44422 4456789999999999888775
No 62
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=24.51 E-value=2.6e+02 Score=32.25 Aligned_cols=10 Identities=20% Similarity=0.185 Sum_probs=5.3
Q ss_pred HHHHHhccCC
Q 007277 249 IVACICGSDD 258 (609)
Q Consensus 249 iv~sIcq~~s 258 (609)
||..+.+.|.
T Consensus 206 Ii~rLi~iDV 215 (563)
T PF05327_consen 206 IIERLIKIDV 215 (563)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5555555554
No 63
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=24.28 E-value=7.8e+02 Score=28.99 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhc---ccCCCCCchhHHHHHHH-HHhhhhhhheeeccCCchHHHHHHHHHHHHHhhc-----C-CchhH
Q 007277 103 MKEFFQLAVSAFE---NLSHASGRYYMKALSIL-DTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRS-----N-HPHFV 172 (609)
Q Consensus 103 LKDIF~LfI~qf~---~LaD~ssp~y~q~~yLL-EsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~-----~-hp~kV 172 (609)
.++|+...+.+.. ++.--+..-+.+-...| -.|+.+.+..-++|.....-|.+++..|...++. + +-..+
T Consensus 378 ~~~i~~~~~~~~~~~~~~~~~s~g~l~~~~~~LsalL~~c~~~~~~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~ 457 (559)
T PF14868_consen 378 VQEIFTLCFAFCQKWLSPSSCSLGELGQLNFALSALLQVCNSSGSTIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQT 457 (559)
T ss_pred HHHHHHHHHHHHHHhcccCCcCcchHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhchhhhccchHHHHH
Confidence 4456666655543 43333444555555555 5556666666666655566666676666665532 2 22456
Q ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhhHhHHHHHHHHhcCC
Q 007277 173 FAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGI 241 (609)
Q Consensus 173 ~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~I~q~l~s~G~ 241 (609)
...+..|++..|... .++.+.-++-. +..-+...+.+.+++++.+|+.++|-
T Consensus 458 ~~~lL~l~~~~~~~l---~~~~i~qv~~~--------------l~~l~~~~pp~~~kl~~~~FLs~lg~ 509 (559)
T PF14868_consen 458 LSLLLSLLSFFIQLL---DPQLIEQVLTE--------------LTSLFKSEPPDHVKLALLDFLSSLGK 509 (559)
T ss_pred HHHHHHHHHHHHHhc---ChHHHHHHHHH--------------HHHHHhhCCCccchHHHHHHHHHhcc
Confidence 777777777776653 33333333322 22233356677799999999998864
No 64
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=24.03 E-value=42 Score=32.43 Aligned_cols=50 Identities=22% Similarity=0.279 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhH-Hhhhhhhc
Q 007277 34 LLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSC-ISEITRIT 92 (609)
Q Consensus 34 RLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcC-LaDILRIy 92 (609)
+|++|....+++...-.. .+.+. .-|+...+|+ +++.+.+|| +.+|+|.|
T Consensus 4 ~L~eLR~~f~~Ik~~~q~--kD~~~---~vll~~~ll~----~~k~~~gC~~l~ell~FY 54 (137)
T smart00188 4 MLRELRAAFSRVKTFFQM--KDQLD---NILLTESLLE----DFKGYLGCQALSEMIQFY 54 (137)
T ss_pred HHHHHHHHHHHHHHHHHc--cchHh---hHhhhHHHHH----HhCCCcchHHHHHHHHHH
Confidence 456666666655432000 22222 2356667775 588899999 78899985
No 65
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=23.98 E-value=6.5e+02 Score=30.77 Aligned_cols=136 Identities=10% Similarity=0.107 Sum_probs=85.4
Q ss_pred ccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCc
Q 007277 70 LRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLEC 149 (609)
Q Consensus 70 LkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ 149 (609)
|.+..-.||-.+|-|+.-+.+.|-. .| .....|++++...... .|..|..+|-+++.+ ..+=.
T Consensus 527 l~d~v~~Ir~~aa~~l~~l~~~~G~--~w--~~~~~i~k~L~~~~q~-------~y~~R~t~l~si~~l------a~v~g 589 (759)
T KOG0211|consen 527 LPDHVYSIREAAARNLPALVETFGS--EW--ARLEEIPKLLAMDLQD-------NYLVRMTTLFSIHEL------AEVLG 589 (759)
T ss_pred hhhhHHHHHHHHHHHhHHHHHHhCc--ch--hHHHhhHHHHHHhcCc-------ccchhhHHHHHHHHH------HHHhc
Confidence 4455667999999999999988773 22 3456677777665443 788888888888832 22224
Q ss_pred hHHHHHHHHHHHHHhhcCCchhHH----HHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhch
Q 007277 150 DKLVVEMFQHFLKVIRSNHPHFVF----AAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCA 225 (609)
Q Consensus 150 ddLI~eLFk~FF~iVr~~hp~kV~----~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca 225 (609)
.++..+.|-.+|.-...+-..+|+ .++..|+..++. .+-.+.+-.++..|...+.-.-+.+..+|..+|..|.
T Consensus 590 ~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~---~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 590 QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE---SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch---HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence 666666666666655555555555 444555554444 2445556667777776544444666667776666544
No 66
>PF08558 TRF: Telomere repeat binding factor (TRF); InterPro: IPR013867 Telomeres function to shield chromosome ends from degradation and end-to-end fusions, as well as preventing the activation of DNA damage checkpoints. Telomeric repeat binding factor (TRF) proteins TRF1 and TRF2 are major components of vertebrate telomeres required for regulation of telomere stability. TRF1 and TRF2 bind to telomeric DNA as homodimers. Dimerisation involves the TRF homology (TRFH) subdomain contained within the dimerisation domain. The TRFH subdomain is important not only for dimerisation, but for DNA binding, telomere localisation, and interactions with other telomeric proteins. The dimerisation domains of TRF1 and TRF2 show the same multi-helical structure, arranged in a solenoid conformation similar to TPR repeats, which can be divided into an alpha-alpha superhelix and a long alpha hairpin []. The two related human TRF proteins hTRF1 and hTRF2 form homodimers and bind directly to telomeric TTAGGG repeats via the myb DNA binding domain IPR001005 from INTERPRO at the carboxy terminus []. TRF1 is implicated in telomere length regulation and TRF2 in telomere protection []. Other telomere complex associated proteins are recruited through their interaction with either TRF1 or TRF2. The fission yeast protein Taz1p (telomere-associated in Schizosaccharomyces pombe (Fission yeast) has similarity to both hTRF1 and hTRF2 and may perform the dual functions of TRF1 and TRF2 at fission yeast telomeres []. This entry represents dimerisation domain.; GO: 0042162 telomeric DNA binding, 0042803 protein homodimerization activity; PDB: 3BQO_A 1H6O_A 3L82_A 3BUA_B 1H6P_B 3BU8_B.
Probab=23.32 E-value=2.9e+02 Score=28.66 Aligned_cols=112 Identities=14% Similarity=0.176 Sum_probs=56.5
Q ss_pred cCCCCCCCh--hHHHHHHHHHHHHhcccCCCCCc--------hhHHHHHHHHHhhhhhhhee-eccCCchH-HHHHHHHH
Q 007277 92 TAPDSPYDD--ELMKEFFQLAVSAFENLSHASGR--------YYMKALSILDTVAKVRSCLL-MLDLECDK-LVVEMFQH 159 (609)
Q Consensus 92 yAPDAPYtD--dqLKDIF~LfI~qf~~LaD~ssp--------~y~q~~yLLEsLA~VKS~VL-mlDLe~dd-LI~eLFk~ 159 (609)
.-||.+... ..|+++|+.+...+. ..+| .-....||.++|..+--.-- ..=+++++ =..++=..
T Consensus 30 ~~~~s~~~~~F~~l~~lFe~~~~~y~----~~~~~L~~~~l~~~~~e~~I~~~lrk~Nla~~l~~~f~~~~i~~~el~~~ 105 (238)
T PF08558_consen 30 SDPDSERGESFRRLRDLFEATKRIYS----SDSPFLSVDELALQDKEQRICQTLRKANLATFLDSLFGTDEIGFLELAES 105 (238)
T ss_dssp -----T-HHHHHHHHHHHHHHCCT-S----CCTH--------HHHHHHHHHHHHHHHCTTT-TTEE-SSSTS-HHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHHHHcC----CCCccchhhhhhhcchHHHHHHHHHHHHhhchHHHhcCCCCCCHHHHHHH
Confidence 345665554 567777776665552 3444 55566777777766522211 11224444 34566688
Q ss_pred HHHHhhcCCc---hhHHHHHHHHHHHH-hcccCCCCHHHHHHHHHHhhccCC
Q 007277 160 FLKVIRSNHP---HFVFAAMETIMTLV-IDESEDVSWDLLRILLASVRKENQ 207 (609)
Q Consensus 160 FF~iVr~~hp---~kV~~~M~dILs~V-IeEsE~Vp~eVLDvIL~~ll~~~k 207 (609)
||++..+++. +.....-..|-++. |.-.+..+..-...||..+.+.+-
T Consensus 106 Fl~if~pe~~~l~k~~~~L~l~LKtQa~i~~l~~~~~~~~~eiL~~lFp~~~ 157 (238)
T PF08558_consen 106 FLDIFCPEDSKLLKSQEELYLDLKTQAVISALEKGPFRSAEEILDRLFPDDL 157 (238)
T ss_dssp HHCCCCCCTC--HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHTSSSS
T ss_pred HHHHHcccccchhhhHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHcCCCh
Confidence 9998888766 33333333333332 222235666677777777766554
No 67
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=23.18 E-value=3.2e+02 Score=34.32 Aligned_cols=144 Identities=19% Similarity=0.278 Sum_probs=0.0
Q ss_pred cchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhhee------eccCC-
Q 007277 76 DVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLL------MLDLE- 148 (609)
Q Consensus 76 dVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VL------mlDLe- 148 (609)
|+|-.||-||--+.=| +|++-+|.-..++--.=+..|+.|+ +.|=+
T Consensus 947 gtR~vvAECLGkL~l~---------------------------epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~ 999 (1233)
T KOG1824|consen 947 GTRNVVAECLGKLVLI---------------------------EPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQ 999 (1233)
T ss_pred hhHHHHHHHhhhHHhC---------------------------ChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCC
Q ss_pred -chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCC--------------------
Q 007277 149 -CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQ-------------------- 207 (609)
Q Consensus 149 -~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k-------------------- 207 (609)
-|.++.+-|..|+..++ +-.-+|+..-...+..++---..+=.+|++.||--+..+.+
T Consensus 1000 ~id~~lk~~ig~fl~~~~-dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDd 1078 (1233)
T KOG1824|consen 1000 PIDPLLKQQIGDFLKLLR-DPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDD 1078 (1233)
T ss_pred ccCHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccc
Q ss_pred --CCCchHHHHHHHHHhhchhhHhHHHHHHHHhcCCCCcchHHH
Q 007277 208 --DVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEI 249 (609)
Q Consensus 208 --~~~PaA~~LA~~VI~~ca~KL~p~I~q~l~s~G~~ld~Y~~i 249 (609)
+...+||.-.-.++..|.+++-+ ++|++-+-.+|.+.|+|
T Consensus 1079 gLd~RKaaFEcmytLLdscld~~di--t~Fl~~~~~GL~Dhydi 1120 (1233)
T KOG1824|consen 1079 GLDLRKAAFECMYTLLDSCLDRLDI--TEFLNHVEDGLEDHYDI 1120 (1233)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhccH--HHHHHHHHhhcchhhHH
No 68
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=22.97 E-value=1.8e+02 Score=27.85 Aligned_cols=68 Identities=9% Similarity=0.214 Sum_probs=46.7
Q ss_pred hhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhhHhHHH
Q 007277 164 IRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNL 232 (609)
Q Consensus 164 Vr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~I 232 (609)
.++..+..=...+.+|.- +|...+.-|.+.+..|...|...+....--|..|.+.++.+|+..+...|
T Consensus 9 Tse~l~~~dw~~il~icD-~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 76 (144)
T cd03568 9 TDEKLTSENWGLILDVCD-KVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEV 76 (144)
T ss_pred cCccCCCcCHHHHHHHHH-HHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 344444443444555544 44444778899999999998876666666677788888999998886655
No 69
>PLN02959 aminoacyl-tRNA ligase
Probab=22.83 E-value=1e+02 Score=38.55 Aligned_cols=29 Identities=24% Similarity=0.127 Sum_probs=24.7
Q ss_pred chhhhhhHHhhhhhhcCCCCCCChhHHHH
Q 007277 77 VRLSVTSCISEITRITAPDSPYDDELMKE 105 (609)
Q Consensus 77 VRa~VAcCLaDILRIyAPDAPYtDdqLKD 105 (609)
.+..+.-||-.++|+.||=+||..++|-.
T Consensus 847 ~~~~L~~vl~~~l~LLaP~~PfiaEEiW~ 875 (1084)
T PLN02959 847 NRDLVWRFMDVQTRLITPICPHYAEHVWR 875 (1084)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 45577789999999999999999987654
No 70
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=22.34 E-value=2.2e+02 Score=34.71 Aligned_cols=45 Identities=9% Similarity=0.171 Sum_probs=24.3
Q ss_pred ccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhhHhH
Q 007277 186 ESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKT 230 (609)
Q Consensus 186 EsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p 230 (609)
+...++..+|+.|+..|..=.+...-.+....+.+|..+...+.+
T Consensus 483 ~~~~~~~~~ld~L~~~L~~Laq~~p~~~a~~~r~~L~~~~~~~~~ 527 (840)
T PF04147_consen 483 QDSPPPFEVLDSLIPHLYDLAQKYPEEAAECFREVLKEMQKRFRK 527 (840)
T ss_pred ccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333577777777777665433333233444455555555555544
No 71
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.30 E-value=45 Score=37.67 Aligned_cols=116 Identities=21% Similarity=0.263 Sum_probs=66.0
Q ss_pred ccchhhhhhHHhhhhhhcCCCCCCChhHHH------HHHHHHHHHhcccCCCCCch-hHHHHHHHHHhhhhhhheeeccC
Q 007277 75 MDVRLSVTSCISEITRITAPDSPYDDELMK------EFFQLAVSAFENLSHASGRY-YMKALSILDTVAKVRSCLLMLDL 147 (609)
Q Consensus 75 kdVRa~VAcCLaDILRIyAPDAPYtDdqLK------DIF~LfI~qf~~LaD~ssp~-y~q~~yLLEsLA~VKS~VLmlDL 147 (609)
.||-+|...|-. |+|+-.+|+ .-|++|+..-+.|.+.=..+ -.+|-..|+.|.++|.=++ +|+
T Consensus 269 sdv~iYggLcAL---------Atfdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy~sky~~cl~~L~~~k~~ll-LD~ 338 (466)
T KOG0686|consen 269 SDVAIYGGLCAL---------ATFDRQDLKLNVIKNESFKLFLELEPQLREILFKFYSSKYASCLELLREIKPRLL-LDM 338 (466)
T ss_pred hhhHHHHhhHhh---------ccCCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHhhhhHHHHHHHHHHhcccee-ech
Confidence 567777777742 788877776 56888888776666644443 4566678888889985443 444
Q ss_pred CchHHHHHHHHHHHHHhhcC-----CchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Q 007277 148 ECDKLVVEMFQHFLKVIRSN-----HPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRK 204 (609)
Q Consensus 148 e~ddLI~eLFk~FF~iVr~~-----hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~ 204 (609)
=--+=+ .++|+.||.. +.+-+-.-|..|-..+=.....+-.+|+.+|++.-+.
T Consensus 339 yLaphV----d~Ly~~IR~r~llqy~~py~s~~m~~mA~af~~sv~~le~~l~~LI~~~~i~ 396 (466)
T KOG0686|consen 339 YLAPHV----DNLYSLIRNRALLQYLSPYSSADMSKMAEAFNTSVAILESELLELILEGKIS 396 (466)
T ss_pred hcchhH----HHHHHHHHHhhHHHhcCccccchHHHHHHHhcccHHHHHHHHHHHHHccchh
Confidence 211112 4555555642 1222222333333332223334666788888876543
No 72
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=22.19 E-value=1.2e+03 Score=26.57 Aligned_cols=188 Identities=16% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHH------
Q 007277 35 LDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQ------ 108 (609)
Q Consensus 35 LkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~------ 108 (609)
.......|+.+-+-....+.....+..-..+...|-...+.+.+-.++.||+.+||+ +..+.+|-
T Consensus 118 ~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~---------~~~R~~f~~~~~v~ 188 (429)
T cd00256 118 VHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV---------DEYRFAFVLADGVP 188 (429)
T ss_pred HHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC---------chHHHHHHHccCHH
Q ss_pred HHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCC--chHHH--HHHHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 007277 109 LAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE--CDKLV--VEMFQHFLKVIRSNHPHFVFAAMETIMTLVI 184 (609)
Q Consensus 109 LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe--~ddLI--~eLFk~FF~iVr~~hp~kV~~~M~dILs~VI 184 (609)
+++..|..-. .+.--+|..+| |++++-++ +.+.+ ..++..+.++++...-++|......|+.-++
T Consensus 189 ~L~~~L~~~~---~~~Ql~Y~~ll--------~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll 257 (429)
T cd00256 189 TLVKLLSNAT---LGFQLQYQSIF--------CIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLI 257 (429)
T ss_pred HHHHHHhhcc---ccHHHHHHHHH--------HHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q ss_pred c------ccCCCCHHHHH----HHHHHhhccCCCCCchHHHHHHHHHhhchhhHhHHHHHHHHhcCCCCcchHHHHHH
Q 007277 185 D------ESEDVSWDLLR----ILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVAC 252 (609)
Q Consensus 185 e------EsE~Vp~eVLD----vIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~I~q~l~s~G~~ld~Y~~iv~s 252 (609)
+ .....-..+++ .++.++....-+- .=|..--..|.-.+.+.++.+ +.+|+|..=|.+
T Consensus 258 ~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~D---------edL~edl~~L~e~L~~~~k~l-tsfD~Y~~El~s 325 (429)
T cd00256 258 SKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDD---------EDLTDDLKFLTEELKNSVQDL-SSFDEYKSELRS 325 (429)
T ss_pred hcccccchhhhHHHHHHHcChHHHHHHHhcCCCCc---------HHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHhc
No 73
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=22.11 E-value=3.6e+02 Score=30.18 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=62.2
Q ss_pred hhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHH---HHHHHHHhc-ccCCCCCchhHHHHHHHHHhhhhhhhee
Q 007277 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEF---FQLAVSAFE-NLSHASGRYYMKALSILDTVAKVRSCLL 143 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDI---F~LfI~qf~-~LaD~ssp~y~q~~yLLEsLA~VKS~VL 143 (609)
+|++.=|.-.|+++..|+.++.-+- + |.+-..-+= |+ |+..+. .+++..= ||++|+ |++
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~--e--~R~i~waentcs~r-~~e~l~n~vg~~ql----QY~SL~--------~iw 218 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDV--E--KRKIEWAENTCSRR-FMEILQNYVGVKQL----QYNSLI--------IIW 218 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhH--H--HHHHHHHHhhHHHH-HHHHHHhhhhhhhh----HHHHHH--------HHH
Confidence 5666777777888888888876331 1 111111000 11 111111 2222222 333333 445
Q ss_pred eccCC--chHHHHHHHHH---HHHHhhcCCchhHHHHHHHHHHHHhccc--CCCCHHHH
Q 007277 144 MLDLE--CDKLVVEMFQH---FLKVIRSNHPHFVFAAMETIMTLVIDES--EDVSWDLL 195 (609)
Q Consensus 144 mlDLe--~ddLI~eLFk~---FF~iVr~~hp~kV~~~M~dILs~VIeEs--E~Vp~eVL 195 (609)
++-++ |-++|..||.. +..+|+.+.-++|......|+..+|+-+ ..|.+-++
T Consensus 219 ~lTf~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll 277 (432)
T COG5231 219 ILTFSKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL 277 (432)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh
Confidence 55554 55666665554 4557888889999999999999999965 44554443
No 74
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.09 E-value=1.2e+03 Score=29.37 Aligned_cols=187 Identities=14% Similarity=0.234 Sum_probs=105.6
Q ss_pred hhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHh
Q 007277 56 ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTV 135 (609)
Q Consensus 56 SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsL 135 (609)
.+-++...+.+ .-++..| +.=|.|+..+--+.--..||..--|.+++.|+++ |- .++. +-++
T Consensus 702 k~i~~~~kv~s-~~~~~s~----vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~-----~~~~-------a~tl 763 (982)
T KOG2022|consen 702 KAIPVFEKVLS-MWLGLSD----VVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FL-----TSCL-------AVTL 763 (982)
T ss_pred HHHHHHHHHHH-HHhcchh----HHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hc-----cchH-------HHHH
Confidence 34455555554 3333333 3668888888877666678989999999999999 53 2222 2233
Q ss_pred hhhhhheeeccCC--chHHHHHHHHHHHH----Hhh----cCCchhHHHHHHHHHHHHhcccCCCCH----HHHHHHHHH
Q 007277 136 AKVRSCLLMLDLE--CDKLVVEMFQHFLK----VIR----SNHPHFVFAAMETIMTLVIDESEDVSW----DLLRILLAS 201 (609)
Q Consensus 136 A~VKS~VLmlDLe--~ddLI~eLFk~FF~----iVr----~~hp~kV~~~M~dILs~VIeEsE~Vp~----eVLDvIL~~ 201 (609)
.-.+-|++|.--+ |-+++...|..+|. +.. .++|..+...|. .++.++.--..++. ..=..|+.+
T Consensus 764 ~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~-~v~~ilkk~P~~~~~~~~~~ts~i~~~ 842 (982)
T KOG2022|consen 764 SLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIG-FVRQILKKIPKFLEPSMLAFTSLILIC 842 (982)
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH-HHHHHHHhCcCccccchHHHHHHHHHH
Confidence 3334455544332 55555544444443 333 255666666665 67777765544332 233455533
Q ss_pred hh----ccCCCCCchHHHHHHHHHhhchhhHhHHHHHHHHhcCC-----------------CCcchHHHHHHHhccCCCC
Q 007277 202 VR----KENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGI-----------------ALDDYAEIVACICGSDDEN 260 (609)
Q Consensus 202 ll----~~~k~~~PaA~~LA~~VI~~ca~KL~p~I~q~l~s~G~-----------------~ld~Y~~iv~sIcq~~s~~ 260 (609)
+. .+.+.+..+|.+.-..++..|....=-.+.+.++..|- .+|-|++|+.++.......
T Consensus 843 a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~ld~~aDIL~al~~k~~se 922 (982)
T KOG2022|consen 843 AFILLNSPEPTTIRAASQFLTALATYATSHDLVTVTSVVAEIGPILIYAIMRGVGGEASRSTLDALADILLALNAKFFSE 922 (982)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHHhhcccchhHHHHHHHHhcchHHHHHHHHHhcCcCccchhHHHHHHHHHHHHhhhHH
Confidence 22 33444445555555556776666444444555554332 2688999888887766544
Q ss_pred C
Q 007277 261 P 261 (609)
Q Consensus 261 ~ 261 (609)
.
T Consensus 923 ~ 923 (982)
T KOG2022|consen 923 T 923 (982)
T ss_pred H
Confidence 4
No 75
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=21.73 E-value=1.5e+03 Score=27.58 Aligned_cols=86 Identities=21% Similarity=0.180 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhhhhheeeccCC-chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc
Q 007277 127 KALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKE 205 (609)
Q Consensus 127 q~~yLLEsLA~VKS~VLmlDLe-~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~ 205 (609)
+-+..|.++-+ -.|.|.| ..+++...|.|++..+- .--++|+.-...|+..+.+-...|...|...++..+...
T Consensus 66 Ril~fl~~f~~----Y~~~~dpeg~~~V~~~~~h~lRg~e-skdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R 140 (885)
T COG5218 66 RILSFLKRFFE----YDMPDDPEGEELVAGTFYHLLRGTE-SKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSER 140 (885)
T ss_pred HHHHHHHHHHH----hcCCCChhhhHHHHHHHHHHHhccc-CcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34445544433 2466776 68999999998887643 234779998999999888877777777777777776554
Q ss_pred CCCCCchHHHHH
Q 007277 206 NQDVSPTSWKLG 217 (609)
Q Consensus 206 ~k~~~PaA~~LA 217 (609)
--...|+.+.=|
T Consensus 141 ~~DRE~~VR~eA 152 (885)
T COG5218 141 LFDREKAVRREA 152 (885)
T ss_pred HhcchHHHHHHH
Confidence 333334433333
No 76
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=20.97 E-value=1e+02 Score=28.69 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhh
Q 007277 27 PVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTS 83 (609)
Q Consensus 27 s~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAc 83 (609)
..+-+-+++..+..+|....-+. +++|. .||+|.|.+||+.+|-
T Consensus 26 ~~Nr~~~k~~~~~~eLk~r~gd~----r~aLl---------~LL~hpn~~VRl~AA~ 69 (106)
T PF09450_consen 26 TANRLYDKMIRIYDELKSRGGDQ----RDALL---------PLLKHPNMQVRLWAAA 69 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT-G----GGGGG---------GGGGSS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcch----HHHHH---------HHHcCCChhHHHHHHH
Confidence 35567777888888887664332 33343 6899999999999885
No 77
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=20.66 E-value=1.4e+02 Score=31.81 Aligned_cols=41 Identities=32% Similarity=0.487 Sum_probs=31.0
Q ss_pred HHHHHhhhhhhhccCCCccchhhhhhHHh---hhhhhcCCCCCCCh
Q 007277 58 LPTMKGLITNDLLRRSDMDVRLSVTSCIS---EITRITAPDSPYDD 100 (609)
Q Consensus 58 ~pl~k~LVs~~LLkHkDkdVRa~VAcCLa---DILRIyAPDAPYtD 100 (609)
...+..|+. ||.+.|.+||+.++-||| |+.|=...+.+|.+
T Consensus 227 ~~~~~~l~~--lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~ 270 (309)
T PF05004_consen 227 EEALPALSE--LLDSDDVDVRIAAGEAIALLYELARDHEEDFLYED 270 (309)
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHhhcccccccccC
Confidence 334444543 999999999999999977 88886667766664
No 78
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.62 E-value=1.1e+03 Score=29.76 Aligned_cols=92 Identities=10% Similarity=0.144 Sum_probs=55.8
Q ss_pred cCCchHHHHHHHHHHHHH-hhcCCchhHHHHHHHH--HHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHh
Q 007277 146 DLECDKLVVEMFQHFLKV-IRSNHPHFVFAAMETI--MTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFT 222 (609)
Q Consensus 146 DLe~ddLI~eLFk~FF~i-Vr~~hp~kV~~~M~dI--Ls~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~ 222 (609)
+..-.+-|..+|++.+.+ ++.-.++-+.++|..| +..-+.|-..-=+..|..+|..+-... .+-.|----..+|+
T Consensus 499 ~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~ 576 (982)
T KOG2022|consen 499 GETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCE 576 (982)
T ss_pred CcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHH
Confidence 334678899999999985 3323344455555433 223333433322334777777774222 22223333678999
Q ss_pred hchhhHhHHHHHHHHhc
Q 007277 223 KCAAKLKTNLKEAVQSR 239 (609)
Q Consensus 223 ~ca~KL~p~I~q~l~s~ 239 (609)
.|...|.||+.+|++-+
T Consensus 577 ~C~~~L~py~d~~~a~~ 593 (982)
T KOG2022|consen 577 TCPESLDPYADQFSAVC 593 (982)
T ss_pred hhhhhCchHHHHHHHHH
Confidence 99999999998887743
No 79
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.52 E-value=7.4e+02 Score=31.22 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=34.8
Q ss_pred CCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHH--hcccCCCCCchhHHHHHHHHHhhh
Q 007277 73 SDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSA--FENLSHASGRYYMKALSILDTVAK 137 (609)
Q Consensus 73 kDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~q--f~~LaD~ssp~y~q~~yLLEsLA~ 137 (609)
+|--.|++.+.| ++|+= .+|| ++++..|+-+ |+.+.++.+-.-+|..++|-.++.
T Consensus 435 kdGAL~~vgsl~--~~L~K---~s~~-----~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~ 491 (1010)
T KOG1991|consen 435 KDGALRMVGSLA--SILLK---KSPY-----KSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSS 491 (1010)
T ss_pred hhhHHHHHHHHH--HHHcc---CCch-----HHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHh
Confidence 444555555555 77654 3444 5677777776 777777766666677777766663
No 80
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=20.36 E-value=6e+02 Score=30.64 Aligned_cols=57 Identities=14% Similarity=0.331 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHhcccCC-C--------CCchhHHH--HHHHHHhhhh-----hhheeeccCCchHHHHHHH
Q 007277 101 ELMKEFFQLAVSAFENLSH-A--------SGRYYMKA--LSILDTVAKV-----RSCLLMLDLECDKLVVEMF 157 (609)
Q Consensus 101 dqLKDIF~LfI~qf~~LaD-~--------ssp~y~q~--~yLLEsLA~V-----KS~VLmlDLe~ddLI~eLF 157 (609)
+=|..|+.|||.+|..=.= | .+|.|+-. --||+.|..= +.+|-|-.|+|++|+.+||
T Consensus 460 ~Fi~~vl~LIF~~f~d~efvPe~tLtYLLThPLFP~~~T~gLL~~l~~~prL~kQAIvTCPNlPl~eLl~qL~ 532 (670)
T PF10395_consen 460 EFIEKVLDLIFDNFKDPEFVPEKTLTYLLTHPLFPIEYTKGLLELLRNNPRLFKQAIVTCPNLPLDELLQQLF 532 (670)
T ss_pred HHHHHHHHHHhhhccccccCchhhhhhhhcCCCCchhhhhhHHHHhhcChhHHHHHhccCCCCcHHHHHHHHH
Confidence 4588899999998761111 2 35555433 4577777643 5788899999999999999
No 81
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=20.27 E-value=2.6e+02 Score=26.13 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=46.6
Q ss_pred HhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhhHhHHH
Q 007277 163 VIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNL 232 (609)
Q Consensus 163 iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~I 232 (609)
+.++..+..=...+..| ..+|.....-+.+++..|-..|...++...-.|-.|...++.+|+..+...|
T Consensus 13 ATs~~~~~~Dw~~~l~i-cD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev 81 (140)
T PF00790_consen 13 ATSESLPSPDWSLILEI-CDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREV 81 (140)
T ss_dssp HT-TTSSS--HHHHHHH-HHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HhCcCCCCCCHHHHHHH-HHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444443333444443 3466666788899999999999887766666777778888889988886665
No 82
>PF02565 RecO_C: Recombination protein O C terminal; InterPro: IPR003717 The damage avoidance-tolerance pathway(s) requires functional recA, recF, recO, and recR genes, suggesting the mechanism to be daughter strand gap repair. The ruvABC genes or the recG gene is also required. The RecG pathway appears to be more active than the RuvABC pathway []. RecO may contain a mononucleotide-binding fold [].; GO: 0006281 DNA repair, 0006310 DNA recombination; PDB: 3Q8D_B 1W3S_B 2V1C_C 1U5K_B.
Probab=20.11 E-value=1.8e+02 Score=25.03 Aligned_cols=58 Identities=21% Similarity=0.317 Sum_probs=38.4
Q ss_pred chhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHH-HHHHHhhhh
Q 007277 77 VRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKAL-SILDTVAKV 138 (609)
Q Consensus 77 VRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~-yLLEsLA~V 138 (609)
.|.++|+.++|++.-+.|+.- .-..+|.++...|..|....++...-.. +.+.-+...
T Consensus 5 ~~~~~a~~~~El~~~~~~~~~----~~~~lf~ll~~~L~~L~~~~~~~~~~~~~f~l~ll~~~ 63 (118)
T PF02565_consen 5 ERLAYASYIAELLDRLLPEGE----PNPELFDLLLAALDALEEGEDPWLLLLIQFELKLLKLL 63 (118)
T ss_dssp HHHHHHHHHHHHHHHHS-CTS------HHHHHHHHHHHHHHHCSSSHCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcccCC----ChHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHc
Confidence 577889999999988775521 1245999999999999876655433333 555554443
No 83
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=20.06 E-value=1.2e+03 Score=28.37 Aligned_cols=91 Identities=22% Similarity=0.193 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhh---hcc--------------C--CCccchhhhhhHHhh
Q 007277 27 PVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITND---LLR--------------R--SDMDVRLSVTSCISE 87 (609)
Q Consensus 27 s~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~---LLk--------------H--kDkdVRa~VAcCLaD 87 (609)
..++.+..| .+|..+.|-|.+-|--+|.-++-.+.++. ++. . .+.--++++.=||+.
T Consensus 539 ~~~e~~~~l----~~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~~~an~ll~vR~L~N 614 (745)
T KOG0301|consen 539 YSSEVLQSL----LALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNADPANQLLVVRCLAN 614 (745)
T ss_pred ccchhHHHH----HHHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccccchhHHHHHHHHHHH
Confidence 344444444 36666777777755555544443333221 111 1 223345666667777
Q ss_pred hhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhH
Q 007277 88 ITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYM 126 (609)
Q Consensus 88 ILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~ 126 (609)
+| ++ |+.-.-+---+..+++.|....--++..++
T Consensus 615 ~f----~~-~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ 648 (745)
T KOG0301|consen 615 LF----SN-PAGRELFMSRLESILDPVIEASSLSNKNLQ 648 (745)
T ss_pred hc----cC-HHHHHHHHHHHHHHhhhhhhhhcccchhHH
Confidence 76 44 555444444455555555554443333433
Done!