Query 007277
Match_columns 609
No_of_seqs 138 out of 220
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 21:44:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 89.3 3.7 0.00013 38.5 11.9 150 58-228 55-207 (242)
2 2bpt_A Importin beta-1 subunit 87.9 5.4 0.00019 43.3 13.5 163 69-237 506-683 (861)
3 1u6g_C TIP120 protein, CAND1; 87.5 6.6 0.00023 45.5 14.7 64 70-138 95-161 (1230)
4 3oc3_A Helicase MOT1, MOT1; re 87.2 0.95 3.3E-05 51.2 7.2 146 69-242 307-452 (800)
5 1u6g_C TIP120 protein, CAND1; 86.2 12 0.00041 43.4 15.9 134 69-223 56-201 (1230)
6 4fdd_A Transportin-1; heat rep 84.1 5.6 0.00019 44.2 11.5 159 73-239 495-675 (852)
7 1qgr_A Protein (importin beta 83.2 11 0.00038 41.0 13.1 26 69-94 416-441 (876)
8 4fdd_A Transportin-1; heat rep 80.7 6 0.00021 43.9 10.1 53 58-115 214-266 (852)
9 2bpt_A Importin beta-1 subunit 80.7 19 0.00065 39.1 13.8 155 69-234 377-541 (861)
10 2qk1_A Protein STU2; STU2P, XM 78.9 20 0.00067 34.7 12.0 154 69-235 68-234 (249)
11 1ibr_B P95, importin beta-1 su 78.2 9.3 0.00032 37.9 9.6 109 60-185 91-203 (462)
12 4ffb_C Protein STU2; tubulin f 77.3 4 0.00014 39.5 6.5 80 33-119 158-246 (278)
13 3m1i_C Exportin-1; heat repeat 72.9 9.2 0.00032 44.0 9.1 48 192-239 754-802 (1049)
14 1qgr_A Protein (importin beta 69.7 30 0.001 37.7 11.7 107 69-186 374-480 (876)
15 1wa5_C Importin alpha RE-expor 67.3 6.1 0.00021 45.0 6.0 36 56-93 493-528 (960)
16 4ffb_C Protein STU2; tubulin f 66.4 11 0.00036 36.5 6.7 140 69-221 63-207 (278)
17 1b3u_A Protein (protein phosph 64.9 26 0.0009 35.9 9.6 26 69-94 410-435 (588)
18 2qk2_A LP04448P; mini spindles 63.8 41 0.0014 31.3 10.0 138 69-224 23-160 (242)
19 1w63_A Adapter-related protein 63.2 75 0.0026 34.5 13.3 23 69-91 321-343 (618)
20 2x19_B Importin-13; nuclear tr 62.9 1.9E+02 0.0065 32.3 16.8 98 74-185 698-802 (963)
21 4b8j_A Importin subunit alpha- 62.5 1.1E+02 0.0037 31.6 13.8 60 68-137 124-189 (528)
22 1wa5_C Importin alpha RE-expor 62.3 64 0.0022 36.6 13.0 57 77-138 569-626 (960)
23 1ibr_B P95, importin beta-1 su 61.6 77 0.0026 31.3 12.0 125 70-204 268-419 (462)
24 1vsy_4 Proteasome activator BL 61.1 1.3E+02 0.0044 34.7 15.2 116 78-203 399-564 (799)
25 3ibv_A Exportin-T; karyopherin 60.0 75 0.0026 37.1 13.3 106 55-165 531-657 (980)
26 1w63_A Adapter-related protein 59.9 74 0.0025 34.5 12.6 124 56-204 271-396 (618)
27 2x1g_F Cadmus; transport prote 56.9 2.5E+02 0.0086 31.6 17.3 39 74-116 706-745 (971)
28 2vgl_B AP-2 complex subunit be 54.8 14 0.00049 39.7 5.8 48 59-115 353-400 (591)
29 1xqr_A HSPBP1 protein; armadil 54.6 46 0.0016 33.3 9.1 60 68-137 89-154 (296)
30 2vgl_B AP-2 complex subunit be 54.1 37 0.0013 36.5 8.9 140 68-229 246-385 (591)
31 2x19_B Importin-13; nuclear tr 53.1 2.3E+02 0.008 31.6 15.4 149 83-237 745-909 (963)
32 4h7y_A Dual specificity protei 52.8 1.1E+02 0.0038 29.1 10.7 101 95-207 27-143 (161)
33 2x1g_F Cadmus; transport prote 52.6 85 0.0029 35.4 11.8 85 151-239 501-589 (971)
34 3tj1_A RNA polymerase I-specif 51.3 1.1E+02 0.0037 34.8 12.2 145 24-204 108-261 (649)
35 1b3u_A Protein (protein phosph 49.9 2.3E+02 0.0077 29.0 16.4 33 153-186 279-311 (588)
36 3u0r_A Apoptosis inhibitor 5; 49.9 2.6E+02 0.009 30.9 14.6 180 5-202 169-353 (507)
37 3bu8_A Telomeric repeat-bindin 46.6 37 0.0013 34.0 6.7 47 54-100 35-81 (235)
38 2vgl_A Adaptor protein complex 44.3 1.2E+02 0.0042 33.2 11.2 135 69-228 299-435 (621)
39 4b8j_A Importin subunit alpha- 42.2 3E+02 0.01 28.2 15.0 30 59-90 244-273 (528)
40 1wa5_B Importin alpha subunit; 41.3 1.8E+02 0.0062 30.1 11.4 63 68-137 306-370 (530)
41 3tj1_A RNA polymerase I-specif 40.9 1.1E+02 0.0037 34.7 10.2 108 81-202 354-468 (649)
42 3tpo_A Importin subunit alpha- 40.6 1.8E+02 0.0061 30.5 11.4 217 8-241 194-421 (529)
43 2qk1_A Protein STU2; STU2P, XM 37.8 2.7E+02 0.0093 26.6 11.4 143 69-225 24-174 (249)
44 3ul1_B Importin subunit alpha- 37.0 97 0.0033 32.5 8.6 142 68-224 323-476 (510)
45 1ldd_A APC2WHB, anaphase promo 35.7 23 0.0008 29.6 2.9 29 85-113 28-60 (74)
46 2jdq_A Importin alpha-1 subuni 35.1 2.6E+02 0.0089 27.5 11.0 119 68-203 71-202 (450)
47 4db6_A Armadillo repeat protei 34.6 2E+02 0.0067 25.4 9.1 59 68-136 19-82 (210)
48 4db8_A Armadillo-repeat protei 33.1 1.5E+02 0.0053 26.8 8.4 22 68-89 103-124 (252)
49 3ltm_A Alpha-REP4; protein eng 32.7 2.6E+02 0.009 24.8 11.2 128 68-238 57-185 (211)
50 4hxt_A De novo protein OR329; 31.4 2.3E+02 0.0079 25.2 9.2 24 68-91 9-32 (252)
51 1wa5_B Importin alpha subunit; 29.4 1.1E+02 0.0037 31.8 7.4 65 68-137 222-286 (530)
52 3a6p_A Exportin-5; exportin-5, 26.9 1.2E+02 0.0042 36.0 8.0 85 151-237 529-628 (1204)
53 3s51_A Protein FACI, fanconi a 26.5 2.7E+02 0.0094 34.1 10.8 143 82-237 174-331 (1308)
54 3m1i_C Exportin-1; heat repeat 25.3 1.7E+02 0.0057 33.7 8.6 41 74-116 247-290 (1049)
55 2jdq_A Importin alpha-1 subuni 24.8 1.6E+02 0.0056 28.9 7.4 124 69-204 157-287 (450)
56 2of3_A ZYG-9; multifunctional 24.6 5.4E+02 0.018 25.7 13.0 75 156-231 168-245 (266)
57 4db6_A Armadillo repeat protei 24.0 3.6E+02 0.012 23.6 9.0 105 68-186 61-168 (210)
58 3l6a_A Eukaryotic translation 23.4 1.7E+02 0.0057 30.5 7.4 74 8-94 180-253 (364)
59 2vgl_A Adaptor protein complex 22.9 4.7E+02 0.016 28.5 11.3 111 69-202 82-196 (621)
60 4hxt_A De novo protein OR329; 21.9 4.2E+02 0.014 23.5 9.2 107 60-186 45-158 (252)
61 4hat_C Exportin-1; heat repeat 21.0 8E+02 0.027 28.8 13.3 185 29-236 774-1001(1023)
62 1hx8_A Synapse-enriched clathr 20.9 3.2E+02 0.011 27.4 8.8 81 25-118 172-262 (299)
63 4fu3_A Regulation of nuclear P 20.6 3.5E+02 0.012 23.4 7.9 72 155-232 7-78 (135)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=89.32 E-value=3.7 Score=38.52 Aligned_cols=150 Identities=9% Similarity=0.143 Sum_probs=88.2
Q ss_pred HHHHHhhhhhhhc-cCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhh
Q 007277 58 LPTMKGLITNDLL-RRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVA 136 (609)
Q Consensus 58 ~pl~k~LVs~~LL-kHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA 136 (609)
..++..|. .+| +.+|..||..++-||..|.+-..++ | ..++..|+..++..| .|+...--......|.++.
T Consensus 55 ~~i~~~L~--~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~-~~~~~~ilp~ll~~l---~d~~~~vr~~a~~aL~~~~ 126 (242)
T 2qk2_A 55 GALVSALK--KVITKDSNVVLVAMAGKCLALLAKGLAKR--F-SNYASACVPSLLEKF---KEKKPNVVTALREAIDAIY 126 (242)
T ss_dssp HHHHHHHH--HHHHHCSCHHHHHHHHHHHHHHHHHHGGG--G-HHHHHHHHHHHHHGG---GCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHhccCCCHHHHHHHHHHHHHHHHHHhhh--H-HHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHH
Confidence 34444443 245 4688889999999999999876652 2 345666666666655 4655444455566666665
Q ss_pred hhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC--CCCHHHHHHHHHHhhccCCCCCchHH
Q 007277 137 KVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE--DVSWDLLRILLASVRKENQDVSPTSW 214 (609)
Q Consensus 137 ~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE--~Vp~eVLDvIL~~ll~~~k~~~PaA~ 214 (609)
.. +. +..++..++...... ...|......+|..++.... .+....+..|+..+..--.+..+.-+
T Consensus 127 ~~--------~~----~~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR 193 (242)
T 2qk2_A 127 AS--------TS----LEAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR 193 (242)
T ss_dssp TT--------SC----HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred Hc--------CC----HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHH
Confidence 42 12 234445556655654 34788888899999887753 34444555555444332233445555
Q ss_pred HHHHHHHhhchhhH
Q 007277 215 KLGEKVFTKCAAKL 228 (609)
Q Consensus 215 ~LA~~VI~~ca~KL 228 (609)
.-|...+......+
T Consensus 194 ~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 194 DSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 55555444444333
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=87.88 E-value=5.4 Score=43.33 Aligned_cols=163 Identities=10% Similarity=0.097 Sum_probs=82.5
Q ss_pred hccCCC--ccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhccc--------CCCC-CchhHHHHHHHHHhhh
Q 007277 69 LLRRSD--MDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENL--------SHAS-GRYYMKALSILDTVAK 137 (609)
Q Consensus 69 LLkHkD--kdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~L--------aD~s-sp~y~q~~yLLEsLA~ 137 (609)
+|.+.| ..||..++.+|..|.....++ ....+..++..++..|... .+.+ .....-+..+++.|..
T Consensus 506 ~l~~~d~~~~vr~~a~~al~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 582 (861)
T 2bpt_A 506 AANRIDNEFNARASAFSALTTMVEYATDT---VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAA 582 (861)
T ss_dssp HHTCSCCGGGHHHHHHHHHHHHHHHCCGG---GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCcchHHHHHHHHHHHHHHHHcchh---hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHH
Confidence 456555 689999999999999875433 1233555555555555432 1111 1223233344444443
Q ss_pred hhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC----CCCHHHHHHHHHHhhccCCCCCchH
Q 007277 138 VRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE----DVSWDLLRILLASVRKENQDVSPTS 213 (609)
Q Consensus 138 VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE----~Vp~eVLDvIL~~ll~~~k~~~PaA 213 (609)
+=..+ .-+....+..++..++...+...+..|.......+..++.-.. ..-..++..|+..+...+......|
T Consensus 583 l~~~~---~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a 659 (861)
T 2bpt_A 583 VIRKS---PSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA 659 (861)
T ss_dssp HHHHC---GGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHh---hhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 31111 0122345556666666666554331344333333333332221 1123466666666633333333445
Q ss_pred HHHHHHHHhhchhhHhHHHHHHHH
Q 007277 214 WKLGEKVFTKCAAKLKTNLKEAVQ 237 (609)
Q Consensus 214 ~~LA~~VI~~ca~KL~p~I~q~l~ 237 (609)
..+...++..+...+.+|+..++.
T Consensus 660 ~~~l~~l~~~~~~~~~~~~~~l~~ 683 (861)
T 2bpt_A 660 VGFIADISNSLEEDFRRYSDAMMN 683 (861)
T ss_dssp HHHHHHHHHHTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhchhccchHHHHHH
Confidence 555566777777777777666554
No 3
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=87.46 E-value=6.6 Score=45.55 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=42.9
Q ss_pred ccCCCccchhhhhhHHhhhhhhcCCC---CCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhh
Q 007277 70 LRRSDMDVRLSVTSCISEITRITAPD---SPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKV 138 (609)
Q Consensus 70 LkHkDkdVRa~VAcCLaDILRIyAPD---APYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~V 138 (609)
|.+.+..||..++-||..|.+.+.|+ ..+......+++.+++..|.. ++.+..+.+.|+.|.++
T Consensus 95 l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-----~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-----QEDVSVQLEALDIMADM 161 (1230)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-----CSCHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHH
Confidence 46777889999999999999998887 344445677777777776642 23344555556655554
No 4
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=87.22 E-value=0.95 Score=51.19 Aligned_cols=146 Identities=13% Similarity=0.096 Sum_probs=100.8
Q ss_pred hccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCC
Q 007277 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (609)
Q Consensus 69 LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe 148 (609)
-|...|-|||+.+|.||..|. ..+++..|+..+-++|..|.| =+++=..-+-||..|-..... ...
T Consensus 307 GL~D~DDDVRAVAAetLiPIA---------~p~~l~~LL~iLWd~L~~LDD-LSASTgSVMdLLAkL~s~p~~-a~~--- 372 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP---------ITDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRENPE-LSI--- 372 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC---------CSSTHHHHHHHHHHHHHTCCS-CCTTHHHHHHHHHHHHHHCTT-CCC---
T ss_pred hcCCcccHHHHHHHHHhhhhc---------chhhHHHHHHHHHHHhhhhcc-cchhhHHHHHHHHHHHcCCcc-ccc---
Confidence 346679999999999999988 236689999999999999966 444445556666665554421 111
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhhH
Q 007277 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKL 228 (609)
Q Consensus 149 ~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL 228 (609)
...|+..||--|... -..|+.+....|..++ -..++..|+++++=+.. ....+++.+|...-..=+
T Consensus 373 dp~LVPRL~PFLRHt-----ITSVR~AVL~TL~tfL------~~~~LRLIFQNILLE~n---eeIl~lS~~VWk~r~~Ll 438 (800)
T 3oc3_A 373 PPERLKDIFPCFTSP-----VPEVRTSILNMVKNLS------EESIDFLVAEVVLIEEK---DEIREMAIKLLKKRRDLP 438 (800)
T ss_dssp CSGGGGGTGGGGTCS-----SHHHHHHHHHHTTTCC------CHHHHHHHHHHHHHCSC---HHHHHHHHHHHHTCSCCC
T ss_pred ChHHHHHHHhhhcCC-----cHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHH
Confidence 126666666544332 3568887777776666 67899999999875443 356667777775111119
Q ss_pred hHHHHHHHHhcCCC
Q 007277 229 KTNLKEAVQSRGIA 242 (609)
Q Consensus 229 ~p~I~q~l~s~G~~ 242 (609)
++.++.+.+-.|++
T Consensus 439 ~~wi~L~MtPIGv~ 452 (800)
T 3oc3_A 439 KNLILHFMNVIGGS 452 (800)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHhcCcCCCc
Confidence 99999999988887
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=86.21 E-value=12 Score=43.40 Aligned_cols=134 Identities=10% Similarity=0.074 Sum_probs=76.0
Q ss_pred hccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCC
Q 007277 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (609)
Q Consensus 69 LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe 148 (609)
.|.+.+..||..++.||..+...+.+ .++..|+..++..| .|++..- +......|+.+-. ++.
T Consensus 56 ~L~d~~~~vR~~A~~~L~~l~~~~~~------~~~~~i~~~Ll~~l---~d~~~~v---R~~a~~~L~~i~~-----~l~ 118 (1230)
T 1u6g_C 56 LLEDKNGEVQNLAVKCLGPLVSKVKE------YQVETIVDTLCTNM---LSDKEQL---RDISSIGLKTVIG-----ELP 118 (1230)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHHT---TCSSSHH---HHHHHHHHHHHHH-----HCC
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHh---cCCcHHH---HHHHHHHHHHHHH-----hCC
Confidence 35689999999999999999975422 56777777777664 4544332 3334444443322 222
Q ss_pred --------chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-C-C--HHHHHHHHHHhhccCCCCCchHHHH
Q 007277 149 --------CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-V-S--WDLLRILLASVRKENQDVSPTSWKL 216 (609)
Q Consensus 149 --------~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~-V-p--~eVLDvIL~~ll~~~k~~~PaA~~L 216 (609)
......+++..++..+.+.....+......++..+++.... + | ..++..++..|. ...+.-+..
T Consensus 119 ~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~----~~~~~vR~~ 194 (1230)
T 1u6g_C 119 PASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT----SPRLAVRKR 194 (1230)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG----CSSHHHHHH
T ss_pred CcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHc----CCcHHHHHH
Confidence 12345666666666665333456777777788888864322 2 2 344444444443 233444444
Q ss_pred HHHHHhh
Q 007277 217 GEKVFTK 223 (609)
Q Consensus 217 A~~VI~~ 223 (609)
|...|..
T Consensus 195 a~~al~~ 201 (1230)
T 1u6g_C 195 TIIALGH 201 (1230)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=84.06 E-value=5.6 Score=44.22 Aligned_cols=159 Identities=9% Similarity=0.173 Sum_probs=90.1
Q ss_pred CCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCchHH
Q 007277 73 SDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKL 152 (609)
Q Consensus 73 kDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddL 152 (609)
.+......+.-||.-|.....+. -...+.+..++..++..+..|.|.+...+ .+++.++.+-..+-. ..-..
T Consensus 495 ~~~~~~~~~~~ai~~l~~~~~~~-~~~~~~~~~l~p~l~~~~~~l~d~~~~~~----~~~~~l~~i~~~~g~---~~~~~ 566 (852)
T 4fdd_A 495 YQHKNLLILYDAIGTLADSVGHH-LNKPEYIQMLMPPLIQKWNMLKDEDKDLF----PLLECLSSVATALQS---GFLPY 566 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHHHGGG-GCCHHHHHHHHHHHHHHHHHSCTTCTTHH----HHHHHHHHHHHHHGG---GGHHH
T ss_pred hChHHHHHHHHHHHHHHHHhhhh-hccHHHHHHHHHHHHHHHHhcccccHHHH----HHHHHHHHHHHHHhH---hHHHH
Confidence 33444455667777776554332 12245677888888888888877554332 466666655332211 22233
Q ss_pred HHHHHHHHHHHhhcC---------------C-chhHHHHHHHHHHHHhcccCC-C-----CHHHHHHHHHHhhccCCCCC
Q 007277 153 VVEMFQHFLKVIRSN---------------H-PHFVFAAMETIMTLVIDESED-V-----SWDLLRILLASVRKENQDVS 210 (609)
Q Consensus 153 I~eLFk~FF~iVr~~---------------h-p~kV~~~M~dILs~VIeEsE~-V-----p~eVLDvIL~~ll~~~k~~~ 210 (609)
+..+|..++..++.. . ...+.....+.+..++...+. + ...++..|+..+-.......
T Consensus 567 ~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr 646 (852)
T 4fdd_A 567 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVR 646 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHH
Confidence 334444444333321 0 234555555666666554421 1 13567777777644443444
Q ss_pred chHHHHHHHHHhhchhhHhHHHHHHHHhc
Q 007277 211 PTSWKLGEKVFTKCAAKLKTNLKEAVQSR 239 (609)
Q Consensus 211 PaA~~LA~~VI~~ca~KL~p~I~q~l~s~ 239 (609)
-.|+.+-..++..|...+.+|+..++..+
T Consensus 647 ~~a~~~l~~l~~~~~~~~~~~l~~~lp~l 675 (852)
T 4fdd_A 647 QSSFALLGDLTKACFQHVKPCIADFMPIL 675 (852)
T ss_dssp HHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56777778888899999999988877533
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=83.16 E-value=11 Score=40.97 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=21.3
Q ss_pred hccCCCccchhhhhhHHhhhhhhcCC
Q 007277 69 LLRRSDMDVRLSVTSCISEITRITAP 94 (609)
Q Consensus 69 LLkHkDkdVRa~VAcCLaDILRIyAP 94 (609)
+|.+.+..||..++.||..+...+.+
T Consensus 416 ~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 416 LMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 45777888999999999999888766
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=80.73 E-value=6 Score=43.95 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=37.4
Q ss_pred HHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhc
Q 007277 58 LPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFE 115 (609)
Q Consensus 58 ~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~ 115 (609)
..+...|.. ++.+.|.+||..++-||..|...+. + +-...|..|+.+++..+.
T Consensus 214 ~~~l~~l~~--~~~d~~~~vr~~a~~~L~~l~~~~~-~--~~~~~l~~l~~~l~~~~~ 266 (852)
T 4fdd_A 214 DSFIENLFA--LAGDEEPEVRKNVCRALVMLLEVRM-D--RLLPHMHNIVEYMLQRTQ 266 (852)
T ss_dssp HHHHHHHHH--HHTCCCHHHHHHHHHHHHHHHHHCH-H--HHGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHhCH-H--HHHHHHHHHHHHHHHHcc
Confidence 344444443 5678899999999999999998742 1 112457788888887765
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=80.69 E-value=19 Score=39.09 Aligned_cols=155 Identities=6% Similarity=0.018 Sum_probs=80.0
Q ss_pred hccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCC
Q 007277 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (609)
Q Consensus 69 LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe 148 (609)
+|.+.+..+|-.++.||..|.+-+.|+ .-...+..|+..++.. |.|++..--....+.|.+++..-. -++.
T Consensus 377 ~l~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~il~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~----~~~~ 447 (861)
T 2bpt_A 377 NITADNWRNREAAVMAFGSIMDGPDKV--QRTYYVHQALPSILNL---MNDQSLQVKETTAWCIGRIADSVA----ESID 447 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHH--HHHHHHHHHHHHHHHG---GGCSCHHHHHHHHHHHHHHHHHHG----GGSC
T ss_pred HcCCCChhHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHhh----hhcC
Confidence 456788889999999999887543211 0013344444444444 455422222233445555554321 1232
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC-----CCC---HHHHHHHHHHhhccC--CCCCchHHHHHH
Q 007277 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE-----DVS---WDLLRILLASVRKEN--QDVSPTSWKLGE 218 (609)
Q Consensus 149 ~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE-----~Vp---~eVLDvIL~~ll~~~--k~~~PaA~~LA~ 218 (609)
....+..++..++....++ ..|.......+..+++... .+. ..++..|+..+...+ ....-.++....
T Consensus 448 ~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 3345666666666666553 6677766666666665432 121 345555555544322 112223444445
Q ss_pred HHHhhchhhHhHHHHH
Q 007277 219 KVFTKCAAKLKTNLKE 234 (609)
Q Consensus 219 ~VI~~ca~KL~p~I~q 234 (609)
.++..+...+.+|+.+
T Consensus 526 ~l~~~~~~~~~~~~~~ 541 (861)
T 2bpt_A 526 TMVEYATDTVAETSAS 541 (861)
T ss_dssp HHHHHCCGGGHHHHHH
T ss_pred HHHHHcchhhHHHHHH
Confidence 5666666555555444
No 10
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=78.90 E-value=20 Score=34.73 Aligned_cols=154 Identities=8% Similarity=0.132 Sum_probs=90.1
Q ss_pred hc-cCCCccchhhhhhHHhhhhhhcC-CCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeecc
Q 007277 69 LL-RRSDMDVRLSVTSCISEITRITA-PDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLD 146 (609)
Q Consensus 69 LL-kHkDkdVRa~VAcCLaDILRIyA-PDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlD 146 (609)
.| +.+|..||..++-||..|.+-.+ |. |.-.....|+-.++..| .|....--....+.|.+|.+. +-- ..
T Consensus 68 ~l~~D~n~~v~~~A~~al~~la~~l~~~~--f~~~y~~~llp~ll~~l---~dkk~~V~~aa~~al~~i~~~--~~~-~~ 139 (249)
T 2qk1_A 68 IIQKDANIQAVALAAQSVELICDKLKTPG--FSKDYVSLVFTPLLDRT---KEKKPSVIEAIRKALLTICKY--YDP-LA 139 (249)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHHHHCTTT--SCHHHHHHHHHHHHHGG---GCCCHHHHHHHHHHHHHHHHH--SCT-TC
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHH--ccc-cc
Confidence 45 67788889999999999998777 66 33234445555555544 454433334556667777663 110 01
Q ss_pred C-C-chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCC--------CHHHHHHHHHHhhccCCCCCchHHHH
Q 007277 147 L-E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDV--------SWDLLRILLASVRKENQDVSPTSWKL 216 (609)
Q Consensus 147 L-e-~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~V--------p~eVLDvIL~~ll~~~k~~~PaA~~L 216 (609)
. . -++|+..|| ...... ...|.......|..+++.+... +..++..|...+-..++...-+|+..
T Consensus 140 ~~~~l~~ll~~l~----~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~ 214 (249)
T 2qk1_A 140 SSGRNEDMLKDIL----EHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFES 214 (249)
T ss_dssp TTCTTHHHHHHHH----HHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred cCCcHHHHHHHHH----HHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 1 1 345555555 444444 3478888888899999888754 33444444444433333344455555
Q ss_pred HHHHHhhchhh-HhHHHHHH
Q 007277 217 GEKVFTKCAAK-LKTNLKEA 235 (609)
Q Consensus 217 A~~VI~~ca~K-L~p~I~q~ 235 (609)
...++...+.+ |.||+..+
T Consensus 215 l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 215 FAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHhCHHHHHHHHHHH
Confidence 55555555554 77777663
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=78.22 E-value=9.3 Score=37.93 Aligned_cols=109 Identities=11% Similarity=0.143 Sum_probs=62.3
Q ss_pred HHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCC-Cch-hHHHHHHHHHhhh
Q 007277 60 TMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHAS-GRY-YMKALSILDTVAK 137 (609)
Q Consensus 60 l~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~s-sp~-y~q~~yLLEsLA~ 137 (609)
+...|+. +|.+.+..| ..+|-||+.|.+...|+.-| .+++..++..+. +.+ ++. -.-.+.+|..|.+
T Consensus 91 ik~~ll~--~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w-----~~ll~~L~~~l~---~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 91 VKNYVLQ--TLGTETYRP-SSASQCVAGIACAEIPVNQW-----PELIPQLVANVT---NPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HHHHHHH--HTTCCCSSS-CSHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHH---CTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HhCCCCchh-hHHHHHHHHHHHHhcccccc-----HHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHH
Confidence 4444553 467788889 88999999999998776444 234555555443 221 221 1223344444433
Q ss_pred h-hhheeeccCCchHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhc
Q 007277 138 V-RSCLLMLDLECDKLVVEMFQHFLKVIRSNH-PHFVFAAMETIMTLVID 185 (609)
Q Consensus 138 V-KS~VLmlDLe~ddLI~eLFk~FF~iVr~~h-p~kV~~~M~dILs~VIe 185 (609)
- +.- + -...+..++..|+..+.... ...|+......+..+++
T Consensus 160 ~~~~~-----~-~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 160 DIDPE-----Q-LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp HSCGG-----G-TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred hCCch-----h-hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 1 110 0 13445567777777766553 46677777777776654
No 12
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=77.32 E-value=4 Score=39.47 Aligned_cols=80 Identities=21% Similarity=0.247 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCC-----CCCh----hHH
Q 007277 33 NLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDS-----PYDD----ELM 103 (609)
Q Consensus 33 kRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDA-----PYtD----dqL 103 (609)
..|.-|...|......... ....+..+++.| ..+|.|.|++||-.+.-||++|+|+.-+.. +|-+ .|+
T Consensus 158 ~~l~~l~~~l~~fg~~~~~-~k~~l~~i~~~l--~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~ 234 (278)
T 4ffb_C 158 AAANCVYELMAAFGLTNVN-VQTFLPELLKHV--PQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQV 234 (278)
T ss_dssp HHHHHHHHHHHHHTTTTCC-HHHHHHHHGGGH--HHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHH
T ss_pred HHHHHHHHHHHHhCCCcCC-chhHHHHHHHHH--HHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHH
Confidence 3444455555554332222 111233344443 367999999999999999999999987653 3422 466
Q ss_pred HHHHHHHHHHhcccCC
Q 007277 104 KEFFQLAVSAFENLSH 119 (609)
Q Consensus 104 KDIF~LfI~qf~~LaD 119 (609)
++|... |..+.+
T Consensus 235 k~le~~----f~k~~~ 246 (278)
T 4ffb_C 235 KDLHKL----FAKVGD 246 (278)
T ss_dssp HHHHHH----HSCCCC
T ss_pred HHHHHH----HHhcCC
Confidence 666544 455544
No 13
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=72.92 E-value=9.2 Score=44.04 Aligned_cols=48 Identities=17% Similarity=0.079 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhccCCC-CCchHHHHHHHHHhhchhhHhHHHHHHHHhc
Q 007277 192 WDLLRILLASVRKENQD-VSPTSWKLGEKVFTKCAAKLKTNLKEAVQSR 239 (609)
Q Consensus 192 ~eVLDvIL~~ll~~~k~-~~PaA~~LA~~VI~~ca~KL~p~I~q~l~s~ 239 (609)
+.+++.|+..|.+.... ..|.+..++..++......+.+|+.+.+..+
T Consensus 754 ~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l 802 (1049)
T 3m1i_C 754 EPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSV 802 (1049)
T ss_dssp HHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 44556666665432111 2367889999999999888888887776643
No 14
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=69.73 E-value=30 Score=37.66 Aligned_cols=107 Identities=9% Similarity=0.051 Sum_probs=61.9
Q ss_pred hccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCC
Q 007277 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (609)
Q Consensus 69 LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe 148 (609)
+|.+.+..||-.++.||..|..-+.|+. -...+..++..++..| .|+....-......|.+++..-.- .+.
T Consensus 374 ~l~~~~~~~r~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~~----~~~ 444 (876)
T 1qgr_A 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQ--LKPLVIQAMPTLIELM---KDPSVVVRDTAAWTVGRICELLPE----AAI 444 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHH--HHHHHHHHHHHHHHHH---TCSSHHHHHHHHHHHHHHHHHCGG----GTS
T ss_pred HccCCChHHHHHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhCch----hcc
Confidence 4567888899988889988875443220 0134555666555554 555433444556667777664211 111
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcc
Q 007277 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186 (609)
Q Consensus 149 ~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeE 186 (609)
....+..++..++..+.++ ..|.......|..++..
T Consensus 445 ~~~~l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 445 NDVYLAPLLQCLIEGLSAE--PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp STTTHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence 2344566666677766552 56666655566666654
No 15
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=67.32 E-value=6.1 Score=44.96 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=27.0
Q ss_pred hhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcC
Q 007277 56 ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITA 93 (609)
Q Consensus 56 SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyA 93 (609)
-+.+++..|++ .|.+.+.-||.++|.||..++....
T Consensus 493 ~l~~~l~~l~~--~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 493 QLIELMPILAT--FLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHHHH--HTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHH--HhCCCChhHHHHHHHHHHHHHhccc
Confidence 46666666665 3556788899999999999988643
No 16
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=66.42 E-value=11 Score=36.48 Aligned_cols=140 Identities=9% Similarity=0.057 Sum_probs=64.1
Q ss_pred hccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHH-hc-ccCCCCCchhHHHHHHHHHhhhhhhheeecc
Q 007277 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSA-FE-NLSHASGRYYMKALSILDTVAKVRSCLLMLD 146 (609)
Q Consensus 69 LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~q-f~-~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlD 146 (609)
+|.-+|.-|...+.-||..++..+.+...... ...-+...++.. +. .|+++....-......|-.+...-
T Consensus 63 ~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~------- 134 (278)
T 4ffb_C 63 YITDSNVVAQEQAIVALNSLIDAFASSSLKNA-HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD------- 134 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTCC---CCHH-HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-------
T ss_pred HhccchHHHHHHHHHHHHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-------
Confidence 44445555555566678888887776643322 222222223322 22 366654433333333333322211
Q ss_pred CCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc--CCCC-HHHHHHHHHHhhccCCCCCchHHHHHHHHH
Q 007277 147 LECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES--EDVS-WDLLRILLASVRKENQDVSPTSWKLGEKVF 221 (609)
Q Consensus 147 Le~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEs--E~Vp-~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI 221 (609)
...+. ++..++...... ..+|.......|..+|.+. ..++ ...+..|+..+.+--...++..+.-|..++
T Consensus 135 ~~~~~----~~e~l~~~l~~K-npkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 135 TSITQ----SVELVIPFFEKK-LPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp SSSHH----HHHHHGGGGGCS-CHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred CcHHH----HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 01122 233333333433 3456677777788888884 3455 345565554443322233444444444443
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=64.93 E-value=26 Score=35.92 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=13.7
Q ss_pred hccCCCccchhhhhhHHhhhhhhcCC
Q 007277 69 LLRRSDMDVRLSVTSCISEITRITAP 94 (609)
Q Consensus 69 LLkHkDkdVRa~VAcCLaDILRIyAP 94 (609)
++.+.+..||..++.||..|.+.+-+
T Consensus 410 ~~~d~~~~vr~~~~~~l~~l~~~~~~ 435 (588)
T 1b3u_A 410 LAEDAKWRVRLAIIEYMPLLAGQLGV 435 (588)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHCG
T ss_pred HhcCCCchHHHHHHHHHHHHHHHcCH
Confidence 34455555555555555555554444
No 18
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=63.79 E-value=41 Score=31.28 Aligned_cols=138 Identities=9% Similarity=0.076 Sum_probs=88.3
Q ss_pred hccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCC
Q 007277 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (609)
Q Consensus 69 LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe 148 (609)
.+..+|-.+|.-++-+|..++.-+ |. +....+.+|+..+...|. .|.+..-....+..|..|+.. +--+
T Consensus 23 ~l~s~~w~~R~~a~~~L~~l~~~~-~~--~~~~~~~~i~~~L~~~l~--kd~~~~V~~~a~~~l~~la~~----l~~~-- 91 (242)
T 2qk2_A 23 KLEEKKWTLRKESLEVLEKLLTDH-PK--LENGEYGALVSALKKVIT--KDSNVVLVAMAGKCLALLAKG----LAKR-- 91 (242)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHC-SS--BCCCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHH----HGGG--
T ss_pred hhccCCHHHHHHHHHHHHHHHccC-CC--CCCCCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHH----Hhhh--
Confidence 457889999999999999998863 33 223345677777766652 144444566667777777742 1111
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhc
Q 007277 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKC 224 (609)
Q Consensus 149 ~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~c 224 (609)
-...+..++..++....+. ...|+......|..++.... ...++..|+..+.. .+|..+.-+-..|..+
T Consensus 92 ~~~~~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~----~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS--LEAQQESIVESLSN----KNPSVKSETALFIARA 160 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTC----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcC----CChHHHHHHHHHHHHH
Confidence 2466777888888876653 45688888888888877643 24567776666542 2455555555555554
No 19
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=63.23 E-value=75 Score=34.50 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=17.4
Q ss_pred hccCCCccchhhhhhHHhhhhhh
Q 007277 69 LLRRSDMDVRLSVTSCISEITRI 91 (609)
Q Consensus 69 LLkHkDkdVRa~VAcCLaDILRI 91 (609)
||.++|..||..+-.+|..|.+.
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~ 343 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQT 343 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCchHHHHHHHHHHHHhh
Confidence 57778888887777777777765
No 20
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=62.89 E-value=1.9e+02 Score=32.34 Aligned_cols=98 Identities=9% Similarity=0.166 Sum_probs=48.2
Q ss_pred CccchhhhhhHHhhhhhhcCCC-CCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeecc--CC--
Q 007277 74 DMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLD--LE-- 148 (609)
Q Consensus 74 DkdVRa~VAcCLaDILRIyAPD-APYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlD--Le-- 148 (609)
+..|.=.++-|+..+.+.+-++ .|| |-.++.+++..+.+- + ....++++..+... + -.+ ..
T Consensus 698 ~~~v~e~~~~~l~~~~~~~~~~~~~~----l~~~~~~l~~~~~~~-----~-~~~~l~l~~~li~~--f--~~~~~~~~~ 763 (963)
T 2x19_B 698 DAQVVEAVCAIFEKSVKTLLDDFAPM----VPQLCEMLGRMYSTI-----P-QASALDLTRQLVHI--F--AHEPAHFPP 763 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSTTGGG----HHHHHHHHHHHHHHS-----C-CHHHHHHHHHHHHH--H--TTCTTTCHH
T ss_pred chHHHHHHHHHHHHHHHhhccccccc----HHHHHHHHHHHHHcC-----C-ccHHHHHHHHHHHH--h--CCCcchHHH
Confidence 4456556666677777665554 444 566666666666541 1 22345555555321 1 011 11
Q ss_pred chHHHHHHHHHHHHHhhcCC--chhHHHHHHHHHHHHhc
Q 007277 149 CDKLVVEMFQHFLKVIRSNH--PHFVFAAMETIMTLVID 185 (609)
Q Consensus 149 ~ddLI~eLFk~FF~iVr~~h--p~kV~~~M~dILs~VIe 185 (609)
...++..+|+.+|.++..+. -+.+....-.+|..++.
T Consensus 764 ~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~ 802 (963)
T 2x19_B 764 IEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALK 802 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHH
Confidence 23455556666666665332 13344444444444443
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=62.45 E-value=1.1e+02 Score=31.61 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=35.3
Q ss_pred hhccCCC-ccchhhhhhHHhhhhhhcCCCCCCChhHHHH-----HHHHHHHHhcccCCCCCchhHHHHHHHHHhhh
Q 007277 68 DLLRRSD-MDVRLSVTSCISEITRITAPDSPYDDELMKE-----FFQLAVSAFENLSHASGRYYMKALSILDTVAK 137 (609)
Q Consensus 68 ~LLkHkD-kdVRa~VAcCLaDILRIyAPDAPYtDdqLKD-----IF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~ 137 (609)
.+|.+.| ..||..++.||..|..- +.+.... +...++.. |.+++...-.+....|.+|+.
T Consensus 124 ~lL~~~~~~~v~~~A~~~L~~l~~~-------~~~~~~~~~~~g~i~~L~~l---L~~~~~~v~~~a~~aL~~l~~ 189 (528)
T 4b8j_A 124 QFLTREDFPQLQFEAAWALTNIASG-------TSENTKVVIDHGAVPIFVKL---LGSSSDDVREQAVWALGNVAG 189 (528)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHTS-------CHHHHHHHHHTTHHHHHHHH---TTCSCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhCC-------CHHHHHHHHhCCcHHHHHHH---hcCCCHHHHHHHHHHHHHHhC
Confidence 3677776 89999999999998842 2232222 23333333 344433344455666777753
No 22
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=62.28 E-value=64 Score=36.65 Aligned_cols=57 Identities=9% Similarity=0.206 Sum_probs=36.9
Q ss_pred chhhhhhHHhhhhhhcCCC-CCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhh
Q 007277 77 VRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKV 138 (609)
Q Consensus 77 VRa~VAcCLaDILRIyAPD-APYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~V 138 (609)
..-++..||..|...+..+ .||-+.-+.-++..+-.. +.+++++.+. .+++|+|+.+
T Consensus 569 ~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~---~~~~~~~~~~--~~~~e~l~~l 626 (960)
T 1wa5_C 569 ENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIM---AKNPSNPRFT--HYTFESIGAI 626 (960)
T ss_dssp SCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHH---TTSCCCHHHH--HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HhCCCCcHHH--HHHHHHHHHH
Confidence 4568889999998887765 777665444444433332 2456676664 6688888766
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=61.60 E-value=77 Score=31.26 Aligned_cols=125 Identities=11% Similarity=0.114 Sum_probs=62.3
Q ss_pred ccCCCccchhhhhhHHhhhhhhc------C--------C--CCCCC--hhHHHHHHHHHHHHhcccCC-CCCchhHHH--
Q 007277 70 LRRSDMDVRLSVTSCISEITRIT------A--------P--DSPYD--DELMKEFFQLAVSAFENLSH-ASGRYYMKA-- 128 (609)
Q Consensus 70 LkHkDkdVRa~VAcCLaDILRIy------A--------P--DAPYt--DdqLKDIF~LfI~qf~~LaD-~ssp~y~q~-- 128 (609)
+++.+.+||..+.-++..+.+.- + | ...+. ...+..++..++..|....+ .++..+.-+
T Consensus 268 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~ 347 (462)
T 1ibr_B 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA 347 (462)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHH
Confidence 45778888887777666666542 0 0 11111 12346666666666654321 112222333
Q ss_pred -HHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC-----CCCHHHHHHHHHHh
Q 007277 129 -LSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE-----DVSWDLLRILLASV 202 (609)
Q Consensus 129 -~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE-----~Vp~eVLDvIL~~l 202 (609)
...|..|+.+- + +.++..++..+.....+. .-.+.......|..+.+... ..-..++..|+..+
T Consensus 348 a~~~L~~l~~~~--------~-~~~~~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l 417 (462)
T 1ibr_B 348 AGVCLMLLATCC--------E-DDIVPHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 417 (462)
T ss_dssp HHHHHHHHHHHT--------T-TTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGG
T ss_pred HHHHHHHHHHhc--------c-HHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 34444444431 1 244445555554444433 34566666666676665432 11145676666666
Q ss_pred hc
Q 007277 203 RK 204 (609)
Q Consensus 203 l~ 204 (609)
..
T Consensus 418 ~d 419 (462)
T 1ibr_B 418 KD 419 (462)
T ss_dssp GC
T ss_pred cC
Confidence 43
No 24
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=61.05 E-value=1.3e+02 Score=34.69 Aligned_cols=116 Identities=6% Similarity=0.200 Sum_probs=72.9
Q ss_pred hhhhh-hHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCC-c------
Q 007277 78 RLSVT-SCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE-C------ 149 (609)
Q Consensus 78 Ra~VA-cCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe-~------ 149 (609)
|+.+| .||+-|.|..+-..+|.. .+..++.++ ++|+ |++++. +-.+.+.-++.|=++|.+.|+. .
T Consensus 399 rl~~aL~~l~~~~r~lv~~~~yr~-hl~~lL~l~---LpgI-D~ND~~--KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~ 471 (799)
T 1vsy_4 399 RIISSLKQFTRVIRFIVMDKLYRV-HITNVLSML---VSKL-DMNDTN--LTSNLINGIVSIAAFIPIQDLTGEDDYISF 471 (799)
T ss_dssp HHHHHHHHHHTTHHHHTTSTTGGG-HHHHHHHHH---HHTC-CSSCHH--HHHHHHHHHHHHHHTSCBCCCCCCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHhcCcccHH-HHHHHHHHH---hccC-CcccHH--HHHHHHHHHHHHHHhccccccCCcchhhhh
Confidence 44443 479999999998888854 444444444 3443 234443 5666777777777777777664 1
Q ss_pred ------------------------------------------hHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc
Q 007277 150 ------------------------------------------DKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES 187 (609)
Q Consensus 150 ------------------------------------------ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEs 187 (609)
.+.+.++|.-+|..+..+.-..|...+...+..++.
T Consensus 472 ~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~-- 549 (799)
T 1vsy_4 472 ESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQE-- 549 (799)
T ss_dssp HHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHH--
T ss_pred hhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH--
Confidence 167777888888887765556666555554444444
Q ss_pred CCCCHHHHHHHHHHhh
Q 007277 188 EDVSWDLLRILLASVR 203 (609)
Q Consensus 188 E~Vp~eVLDvIL~~ll 203 (609)
.++.++.+.++..+.
T Consensus 550 -~lS~~if~~~l~k~~ 564 (799)
T 1vsy_4 550 -SMDDKIFNYFASLLN 564 (799)
T ss_dssp -TBCHHHHHHHHHHHH
T ss_pred -hCCHHHHHHHHHHHH
Confidence 467777777776654
No 25
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=60.00 E-value=75 Score=37.07 Aligned_cols=106 Identities=11% Similarity=0.138 Sum_probs=69.8
Q ss_pred HhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCC-CCCChhHHHHHHHHHHHHhcc--c--CCC---------
Q 007277 55 DALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFEN--L--SHA--------- 120 (609)
Q Consensus 55 ~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPD-APYtDdqLKDIF~LfI~qf~~--L--aD~--------- 120 (609)
+-|.++...|++..-|.|+++.||..+|..|.-+.+-+.+. .||-+. |++.+-..|.. . .+.
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~----il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTES----SLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHH----HHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHH----HHHHHHHhhcCcCCCCCcccccccchhh
Confidence 45778888899888889999999999999999999998887 576544 33333332221 1 111
Q ss_pred --CCchhHHHHHHHHHhhhhhhheeeccCC-----chHHHHHHHHHHHHHhh
Q 007277 121 --SGRYYMKALSILDTVAKVRSCLLMLDLE-----CDKLVVEMFQHFLKVIR 165 (609)
Q Consensus 121 --ssp~y~q~~yLLEsLA~VKS~VLmlDLe-----~ddLI~eLFk~FF~iVr 165 (609)
++..|..++||.|.++.+=+.+-. ..+ .+.|+..+|+.+-..+.
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~-~~e~~~~~l~~ll~pl~~~l~~~l~ 657 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNL-TPEEQALYCDSLINALIGKANAALS 657 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112588899999999988555321 111 34556666666555554
No 26
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=59.95 E-value=74 Score=34.54 Aligned_cols=124 Identities=10% Similarity=0.129 Sum_probs=65.4
Q ss_pred hhHHHHHhhhhh-hhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcc-cCCCCCchhHHHHHHHH
Q 007277 56 ALLPTMKGLITN-DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFEN-LSHASGRYYMKALSILD 133 (609)
Q Consensus 56 SL~pl~k~LVs~-~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~-LaD~ssp~y~q~~yLLE 133 (609)
.+..+...|..+ ..++|.+..|..-++-||..+ .+ +..+.. ..+..|.. |.+. ++ .-++..|.
T Consensus 271 ~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~~-----~~~l~~---~a~~~L~~~L~~~-d~--~vr~~aL~ 335 (618)
T 1w63_A 271 AMNDILAQVATNTETSKNVGNAILYETVLTIMDI----KS-----ESGLRV---LAINILGRFLLNN-DK--NIRYVALT 335 (618)
T ss_dssp TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----CC-----CHHHHH---HHHHHHHHHHTCS-ST--TTHHHHHH
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhc----CC-----CHHHHH---HHHHHHHHHHhCC-CC--chHHHHHH
Confidence 334444444432 346777788888888888774 12 122222 22222222 3332 22 23334556
Q ss_pred HhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Q 007277 134 TVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRK 204 (609)
Q Consensus 134 sLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~ 204 (609)
+|..+-.. ..+++...+..+|.... +-+..|...-.++|..+.++.. + ..++..|+..+..
T Consensus 336 ~L~~i~~~-------~p~~~~~~~~~i~~~l~-d~d~~Ir~~alelL~~l~~~~n-v-~~iv~eL~~~l~~ 396 (618)
T 1w63_A 336 SLLKTVQT-------DHNAVQRHRSTIVDCLK-DLDVSIKRRAMELSFALVNGNN-I-RGMMKELLYFLDS 396 (618)
T ss_dssp HHHHHHHH-------HHHHHGGGHHHHHHGGG-SSCHHHHHHHHHHHHHHCCSSS-T-HHHHHHHHHHHHH
T ss_pred HHHHHHhh-------CHHHHHHHHHHHHHHcc-CCChhHHHHHHHHHHHHccccc-H-HHHHHHHHHHHHh
Confidence 66555321 12344455556666554 3345677777778887777643 2 5567777766654
No 27
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=56.85 E-value=2.5e+02 Score=31.57 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=27.8
Q ss_pred CccchhhhhhHHhhhhhhcCCC-CCCChhHHHHHHHHHHHHhcc
Q 007277 74 DMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFEN 116 (609)
Q Consensus 74 DkdVRa~VAcCLaDILRIyAPD-APYtDdqLKDIF~LfI~qf~~ 116 (609)
|.+|.-.++-|+..+++.|-.+ .|| |-.++.+++..|..
T Consensus 706 ~~~v~e~~~~~~~~~~~~~~~~~~p~----l~~~~~~l~~~~~~ 745 (971)
T 2x1g_F 706 EIDVLEAACSAMKHAITNLRSSFQPM----LQDLCLFIVASFQT 745 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC--CTH----HHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHHHhhhhhcccc----HHHHHHHHHHHHhc
Confidence 5567777777888888887666 566 77788888877754
No 28
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=54.84 E-value=14 Score=39.69 Aligned_cols=48 Identities=8% Similarity=0.094 Sum_probs=29.9
Q ss_pred HHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhc
Q 007277 59 PTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFE 115 (609)
Q Consensus 59 pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~ 115 (609)
.+...|. .++.+.|.++|.-++-+|..+..-|+|+ ...++.+++..|.
T Consensus 353 ~iv~~L~--~~l~~~d~~~r~~~v~aI~~la~~~~~~-------~~~~v~~Ll~ll~ 400 (591)
T 2vgl_B 353 QVLAELK--EYATEVDVDFVRKAVRAIGRCAIKVEQS-------AERCVSTLLDLIQ 400 (591)
T ss_dssp HHHHHHH--HHTTSSCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHhChhH-------HHHHHHHHHHHHc
Confidence 3444444 5677888888888888888877665422 2344555555443
No 29
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=54.60 E-value=46 Score=33.29 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=38.6
Q ss_pred hhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHH------HHHHHHHHHhcccCCCCCchhHHHHHHHHHhhh
Q 007277 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMK------EFFQLAVSAFENLSHASGRYYMKALSILDTVAK 137 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLK------DIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~ 137 (609)
.||.|.+.+||..+|-||..|..- ++..+ ..+..++..|.. +++...-...++.|-+|+.
T Consensus 89 ~lL~s~~~~vr~~Aa~~Lg~ia~~--------n~~~~~~vv~~g~l~~Ll~LL~~--~~~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 89 RYLEAGAAGLRWRAAQLIGTCSQN--------VAAIQEQVLGLGALRKLLRLLDR--DACDTVRVKALFAISCLVR 154 (296)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHTT--------CHHHHHHHHHTTHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhC--------CHHHHHHHHHCCCHHHHHHHHcc--CCCHHHHHHHHHHHHHHHc
Confidence 588999999999999999998842 22222 244455555542 2333345556777777753
No 30
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=54.10 E-value=37 Score=36.49 Aligned_cols=140 Identities=14% Similarity=0.211 Sum_probs=68.4
Q ss_pred hhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccC
Q 007277 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDL 147 (609)
.+|+|.|..|+.-++.||..+..-. +-+.+.++.++.-++..|-.|.+ .++ .-++..|.+|..+-...
T Consensus 246 ~~l~~~~~~V~~ea~~~i~~l~~~~----~~~~~~~~~~~~~~~~~L~~L~~-~d~--~vr~~aL~~l~~i~~~~----- 313 (591)
T 2vgl_B 246 PRLSHANSAVVLSAVKVLMKFLELL----PKDSDYYNMLLKKLAPPLVTLLS-GEP--EVQYVALRNINLIVQKR----- 313 (591)
T ss_dssp TCSCSSTTHHHHHHHHHHHHSCCSC----CBTTBSHHHHHHHTHHHHHHHTT-SCH--HHHHHHHHHHHHHHHHC-----
T ss_pred HHHcCCChHHHHHHHHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHhc-CCc--cHHHHHHHHHHHHHHhC-----
Confidence 3689999999999999999886422 11223455555444444334444 222 34556677776653211
Q ss_pred CchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhh
Q 007277 148 ECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAK 227 (609)
Q Consensus 148 e~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~K 227 (609)
+ +++....+.|| ...+.+..|...-.++|..+.++.. + ..++..|+..+.. ....-+.-+..-|..|+.+
T Consensus 314 p--~~~~~~~~~~~--~~~~d~~~Ir~~al~~L~~l~~~~n-v-~~iv~~L~~~l~~----~d~~~r~~~v~aI~~la~~ 383 (591)
T 2vgl_B 314 P--EILKQEIKVFF--VKYNDPIYVKLEKLDIMIRLASQAN-I-AQVLAELKEYATE----VDVDFVRKAVRAIGRCAIK 383 (591)
T ss_dssp C--STTTTCTTTTS--CCTTSCHHHHHHHHHHHHHTCCSST-H-HHHHHHHHHHTTS----SCHHHHHHHHHHHHHHHTT
T ss_pred h--HHHHHHHHhhe--eccCChHHHHHHHHHHHHHHCChhh-H-HHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHh
Confidence 0 01111112222 1112335566666666666665532 2 2344444444322 1222223333445556555
Q ss_pred Hh
Q 007277 228 LK 229 (609)
Q Consensus 228 L~ 229 (609)
+.
T Consensus 384 ~~ 385 (591)
T 2vgl_B 384 VE 385 (591)
T ss_dssp CH
T ss_pred Ch
Confidence 43
No 31
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=53.11 E-value=2.3e+02 Score=31.62 Aligned_cols=149 Identities=14% Similarity=0.091 Sum_probs=78.0
Q ss_pred hHHhhhhhhcCCCCCCCh---hHHHHHHHHHHHHhcccCCC-CCc-hhHHHHHHHHHhhhhhhheeeccCCchHHHHHHH
Q 007277 83 SCISEITRITAPDSPYDD---ELMKEFFQLAVSAFENLSHA-SGR-YYMKALSILDTVAKVRSCLLMLDLECDKLVVEMF 157 (609)
Q Consensus 83 cCLaDILRIyAPDAPYtD---dqLKDIF~LfI~qf~~LaD~-ssp-~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLF 157 (609)
.++..|++.|+-+..|.+ .-+..+|..++..|. .+. +.| .-..+|.+|..+...-.-.++ .....+..+|
T Consensus 745 ~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~--~~~~~~pd~~~~~f~ll~~~~~~~~~~~~---~~~~~~~~i~ 819 (963)
T 2x19_B 745 DLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQ--QGPRDHPDIVDSFMQLLAQALKRKPDLFL---CERLDVKAVF 819 (963)
T ss_dssp HHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHH--HCTTTCHHHHHHHHHHHHHHHHHCGGGGG---CTTSCHHHHH
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHh--hCcccCchHHHHHHHHHHHHHHhCcHHHc---CCcccHHHHH
Confidence 346777777776654543 223344444444444 122 234 346678888888765333332 1222266677
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhcccC----------CCCHHHHHHHHHHhhccCCC-CCchHHHHHHHHHhhchh
Q 007277 158 QHFLKVIRSNHPHFVFAAMETIMTLVIDESE----------DVSWDLLRILLASVRKENQD-VSPTSWKLGEKVFTKCAA 226 (609)
Q Consensus 158 k~FF~iVr~~hp~kV~~~M~dILs~VIeEsE----------~Vp~eVLDvIL~~ll~~~k~-~~PaA~~LA~~VI~~ca~ 226 (609)
..+....+. ....+......++..+|.... ..-..++..||..+...... .......+...++..+..
T Consensus 820 ~~~~~~l~~-~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~ 898 (963)
T 2x19_B 820 QCAVLALKF-PEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFS 898 (963)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChH
Confidence 777776663 334455556667777776532 23345666666666533221 112222222344555666
Q ss_pred hHhHHHHHHHH
Q 007277 227 KLKTNLKEAVQ 237 (609)
Q Consensus 227 KL~p~I~q~l~ 237 (609)
.+..++.++|.
T Consensus 899 ~~~~~l~~~l~ 909 (963)
T 2x19_B 899 LLSMWIKEALQ 909 (963)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 66666666663
No 32
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=52.84 E-value=1.1e+02 Score=29.11 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=64.8
Q ss_pred CCCCCh---hHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchh
Q 007277 95 DSPYDD---ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHF 171 (609)
Q Consensus 95 DAPYtD---dqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~k 171 (609)
-.|++| +.++++|.-.|.+++-= ...++.+|.||+=+.|...-+ -|++ --.++|+.+.+. ...+ .+
T Consensus 27 g~p~~d~~l~rlrd~YerAia~~Pp~---k~~~wrrYI~LWIrYA~~~ei---~D~d---~aR~vy~~a~~~-hKkF-AK 95 (161)
T 4h7y_A 27 SVPLSDALLNKLIGRYSQAIEALPPD---KYGQNESFARIQVRFAELKAI---QEPD---DARDYFQMARAN-CKKF-AF 95 (161)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHSCGG---GGTTCHHHHHHHHHHHHHHHH---HCGG---GCHHHHHHHHHH-CTTB-HH
T ss_pred CCCchhhHHHHHHHHHHHHHHcCCcc---ccccHHHHHHHHHHHHHHHHh---cCHH---HHHHHHHHHHHH-hHHH-HH
Confidence 347777 56778888777776633 377999999999999988544 6666 225566666543 2222 11
Q ss_pred HH-------------HHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCC
Q 007277 172 VF-------------AAMETIMTLVIDESEDVSWDLLRILLASVRKENQ 207 (609)
Q Consensus 172 V~-------------~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k 207 (609)
|. ..-..||..-|.- -..|.++|...|.++..+.+
T Consensus 96 iwi~~AqFEiRqgnl~kARkILg~AiG~-~~k~~~~le~a~~nl~~~~~ 143 (161)
T 4h7y_A 96 VHISFAQFELSQGNVKKSKQLLQKAVER-GAVPLEMLEIALRNLNLQKK 143 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc-CCCcHHHHHHHHHhhhcCCC
Confidence 11 2233566666663 36788888888888765543
No 33
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=52.60 E-value=85 Score=35.40 Aligned_cols=85 Identities=8% Similarity=0.078 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHH---HhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchh
Q 007277 151 KLVVEMFQHFLKVIRS-NHPHFVFAAMETIMTL---VIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAA 226 (609)
Q Consensus 151 dLI~eLFk~FF~iVr~-~hp~kV~~~M~dILs~---VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~ 226 (609)
..+..||+.+...-.. .|+ .|......++.. .+.+....=..++..|+..+ . +.....|...-.++|..|..
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~-~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~ 576 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNV-KLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQL 576 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCH-HHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhcCccccCH-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHH
Confidence 5667777755444322 243 455444444443 33332233445667777666 2 44445555566689999999
Q ss_pred hHhHHHHHHHHhc
Q 007277 227 KLKTNLKEAVQSR 239 (609)
Q Consensus 227 KL~p~I~q~l~s~ 239 (609)
.|.||+.++++.+
T Consensus 577 ~l~p~~~~ll~~l 589 (971)
T 2x1g_F 577 QLKPYADPLLNAC 589 (971)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hccccHHHHHHHH
Confidence 9999988777644
No 34
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=51.28 E-value=1.1e+02 Score=34.78 Aligned_cols=145 Identities=8% Similarity=0.063 Sum_probs=95.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhh-hhccCCCccchhhhhh--HHhhhhhhcCCCCCCCh
Q 007277 24 PPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITN-DLLRRSDMDVRLSVTS--CISEITRITAPDSPYDD 100 (609)
Q Consensus 24 ~pis~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~-~LLkHkDkdVRa~VAc--CLaDILRIyAPDAPYtD 100 (609)
.+++..+|...|+.|..+.+.+|.. +...+..+|++- ..+...+.-|++|+.- .|+=. ..
T Consensus 108 d~~~~~~L~~~L~aLs~~Vs~Ld~~-------~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa----------~~ 170 (649)
T 3tj1_A 108 ERINDKNLNILLDILSSNINRIESS-------RGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSS----------IP 170 (649)
T ss_dssp TSCCHHHHHHHHHHHHHTGGGGCSG-------GGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHH----------CG
T ss_pred CcCCHHHHHHHHHHHHhhhhhcCch-------hHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhc----------cH
Confidence 3578999999999999999998753 234677788888 8888888888887752 22210 13
Q ss_pred hHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCc------hhHHH
Q 007277 101 ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHP------HFVFA 174 (609)
Q Consensus 101 dqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp------~kV~~ 174 (609)
.-|..|+..+|..|..- .....+.+.+|..|..+ |..-+..++.++...+| ..+..
T Consensus 171 ~yl~~vl~mLV~~F~~~----~~~~~~~H~~L~~Il~l--------------vP~s~~~L~~iL~~~FP~~~~s~~~~~~ 232 (649)
T 3tj1_A 171 KWWQDVSMILVSCFILP----IKQTVCHHDMLKYFLRM--------------IPSSMGFIDTYLAKFFPNKNDTRRKLVN 232 (649)
T ss_dssp GGHHHHHHHHHHGGGSC----HHHHHHHHHHHHHHHHH--------------CGGGHHHHHHHHHHTCCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhccCC----CcccHHHHHHHHHHHHH--------------cCCCHHHHHHHHHHhCCCCCCchhHHHH
Confidence 56889999999998631 11234566666666543 22223334444444333 33556
Q ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Q 007277 175 AMETIMTLVIDESEDVSWDLLRILLASVRK 204 (609)
Q Consensus 175 ~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~ 204 (609)
++.++|. |++=+..+-.++|.+|+..+++
T Consensus 233 Yv~NLLr-l~~Y~PeL~~~Il~LIierlik 261 (649)
T 3tj1_A 233 YTSNLLK-LRGYCSELGFQIWSLLIEKIIS 261 (649)
T ss_dssp HHHHHHH-HHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhhchHHHHHHHHHHHHHHHH
Confidence 6666665 4556677888899999888764
No 35
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=49.88 E-value=2.3e+02 Score=28.95 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcc
Q 007277 153 VVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186 (609)
Q Consensus 153 I~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeE 186 (609)
..+++..|+...++. ...|+.....-|..+...
T Consensus 279 ~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 279 KTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp HHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHH
Confidence 345566666655543 345665555555555554
No 36
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=49.87 E-value=2.6e+02 Score=30.90 Aligned_cols=180 Identities=17% Similarity=0.197 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhh-hhhccCCCccchhhhhh
Q 007277 5 KREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLIT-NDLLRRSDMDVRLSVTS 83 (609)
Q Consensus 5 ~~~~ele~~l~~~G~kLis~pis~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs-~~LLkHkDkdVRa~VAc 83 (609)
.-.+|.|+-+.+.-.+++ -..+.+|..-.+ .+-..|.-.+. +.. +..|..+....+. ..-+...|.+.=--...
T Consensus 169 ~l~~E~E~~i~~~ikK~L-~DVT~~EF~L~m-~lL~~lkl~~t-~~g--~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~ 243 (507)
T 3u0r_A 169 VLTKEVEELILTESKKVL-EDVTGEEFVLFM-KILSGLKSLQT-VSG--RQQLVELVAEQADLEQTFNPSDPDCVDRLLQ 243 (507)
T ss_dssp TSCHHHHHHHHHHHHHHT-TSCCHHHHHHHH-HHHHTSGGGSS-HHH--HHHHHHHHHHHHTTTSCCCSSCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHh-ccccHHHHHHHH-HHHHhcccccC-chH--HHHHHHHHHHHHhccCCCCCcCHHHHHHHHH
Confidence 345788888888888888 466777753333 33344443322 222 3344444444321 13345556665556667
Q ss_pred HHhhhhhhcCCCCCCChhHHHHHHHHHHHH-hcccCCCCCc--hhHHHHHHHHHhhhhhhheeeccCC-chHHHHHHHHH
Q 007277 84 CISEITRITAPDSPYDDELMKEFFQLAVSA-FENLSHASGR--YYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQH 159 (609)
Q Consensus 84 CLaDILRIyAPDAPYtDdqLKDIF~LfI~q-f~~LaD~ssp--~y~q~~yLLEsLA~VKS~VLmlDLe-~ddLI~eLFk~ 159 (609)
|+-..|=+|++.+. -..+|.++..+ |+.|.+...+ --...+.||..||++-++. -+++ +.+++..+|++
T Consensus 244 C~~~ALP~FS~~v~-----StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~--~~~e~a~~~l~~iy~~ 316 (507)
T 3u0r_A 244 CTRQAVPLFSKNVH-----STRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFC--GDMEKLETNLRKLFDK 316 (507)
T ss_dssp HHHHHGGGCBTTBC-----CHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTC--CCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCC-----hHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCC--CccchHHHHHHHHHHH
Confidence 77777888887776 44588888887 7777764433 2236789999999997763 3565 77899999999
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHh
Q 007277 160 FLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASV 202 (609)
Q Consensus 160 FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~l 202 (609)
|+..+- .-|..+.. =.++. ++-..+....+.++|..|
T Consensus 317 L~~ymP-~~p~~~~~-~~~~~----~~~p~l~fS~vECLLy~f 353 (507)
T 3u0r_A 317 LLEYMP-LPPEEAEN-GENAG----NEEPKLQFSYVECLLYSF 353 (507)
T ss_dssp HHTTSC-CCC-------------------CCCHHHHHHHHHHH
T ss_pred HHHHCC-CCcccccc-ccccc----ccCcccchhHHHHHHHHH
Confidence 998655 22322110 01111 345568888889988765
No 37
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=46.57 E-value=37 Score=34.04 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=37.3
Q ss_pred HHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCCh
Q 007277 54 RDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDD 100 (609)
Q Consensus 54 ~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtD 100 (609)
-.....++.+|+-..|=.|....=.+++++||+=|..=--+|+-|+.
T Consensus 35 Frq~rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~ 81 (235)
T 3bu8_A 35 FRQIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDM 81 (235)
T ss_dssp HHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSS
T ss_pred HHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHcCCCCCcccCC
Confidence 45567889999988887777766788999998777777778888875
No 38
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=44.26 E-value=1.2e+02 Score=33.15 Aligned_cols=135 Identities=11% Similarity=0.058 Sum_probs=74.0
Q ss_pred hccCCCc--cchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeecc
Q 007277 69 LLRRSDM--DVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLD 146 (609)
Q Consensus 69 LLkHkDk--dVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlD 146 (609)
.|+|.+. .|-.-++.||..+- | +.+.++.++..+..-+ . ++...-+|..|.+|..+-..-
T Consensus 299 ~l~~~n~~~aVl~ea~~~i~~l~----~----~~~~~~~~~~~L~~~L---~---~~~~niry~aL~~l~~l~~~~---- 360 (621)
T 2vgl_A 299 KVQHSNAKNAVLFEAISLIIHHD----S----EPNLLVRACNQLGQFL---Q---HRETNLRYLALESMCTLASSE---- 360 (621)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHHHS---S---CSCHHHHHHHHHHHHHHTTCT----
T ss_pred cccccchHHHHHHHHHHHHHhcC----C----cHHHHHHHHHHHHHHh---c---CCCcchHHHHHHHHHHHHhcc----
Confidence 5677766 66666666666652 2 2233444444433332 2 122234556677777663211
Q ss_pred CCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchh
Q 007277 147 LECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAA 226 (609)
Q Consensus 147 Le~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~ 226 (609)
+..+++......||...+.+.+..|...-.+||..++++.. =..++..|+..+...+ +.-...+..-|..|+.
T Consensus 361 -~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N--v~~Iv~eL~~yl~~~d----~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 361 -FSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSN--AQQIVAEMLSYLETAD----YSIREEIVLKVAILAE 433 (621)
T ss_dssp -TTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh--HHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHH
Confidence 22356677777888877745556788888899999988742 1445555555554332 2212222333456666
Q ss_pred hH
Q 007277 227 KL 228 (609)
Q Consensus 227 KL 228 (609)
++
T Consensus 434 k~ 435 (621)
T 2vgl_A 434 KY 435 (621)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 39
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=42.19 E-value=3e+02 Score=28.24 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=22.7
Q ss_pred HHHHhhhhhhhccCCCccchhhhhhHHhhhhh
Q 007277 59 PTMKGLITNDLLRRSDMDVRLSVTSCISEITR 90 (609)
Q Consensus 59 pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILR 90 (609)
.+...|+ .+|.|.|.+|+..++.||..|..
T Consensus 244 ~~l~~L~--~lL~~~~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 244 PALPALA--RLIHSNDEEVLTDACWALSYLSD 273 (528)
T ss_dssp THHHHHH--HHTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHH--HHHCCCCHHHHHHHHHHHHHHHc
Confidence 3344444 36789999999999999998874
No 40
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=41.28 E-value=1.8e+02 Score=30.08 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=35.4
Q ss_pred hhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHH-HHHHH-hcccCCCCCchhHHHHHHHHHhhh
Q 007277 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQ-LAVSA-FENLSHASGRYYMKALSILDTVAK 137 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~-LfI~q-f~~LaD~ssp~y~q~~yLLEsLA~ 137 (609)
.+|.|.+..||..++.||..|..- ++.+...++. -++.. +.-|.+.+...-......|-+|+.
T Consensus 306 ~lL~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 306 ELLSHESTLVQTPALRAVGNIVTG-------NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTS-------CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHCCCChhhHHHHHHHHHHHHcC-------CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 367889999999999999988742 2333333332 12222 223344433333445566666653
No 41
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=40.90 E-value=1.1e+02 Score=34.75 Aligned_cols=108 Identities=10% Similarity=0.053 Sum_probs=72.0
Q ss_pred hhhHHhhhhhhcCCCCCCCh-----hHHHHHHHHHHHHhcccCC-CCCchhHHHHHHHHHhhhhhhheeeccCC-chHHH
Q 007277 81 VTSCISEITRITAPDSPYDD-----ELMKEFFQLAVSAFENLSH-ASGRYYMKALSILDTVAKVRSCLLMLDLE-CDKLV 153 (609)
Q Consensus 81 VAcCLaDILRIyAPDAPYtD-----dqLKDIF~LfI~qf~~LaD-~ssp~y~q~~yLLEsLA~VKS~VLmlDLe-~ddLI 153 (609)
+=+||.-+|..+.+- |+. .+...+|+.++..|...== +-...|.|++. =.++.. +.+ ++.++
T Consensus 354 LD~im~llf~~~~~~--~~~~~l~~~~~~~lf~~Ll~~F~~~ILpT~~sr~vQFl~--Fy~cs~-------~~~~~~~Fl 422 (649)
T 3tj1_A 354 LDSILTLVSTHVEEQ--VTPESLESGEGVGVFNTLTTLFKTHVLPTYYTRSIQYIM--FHVSQQ-------QLELMDSFL 422 (649)
T ss_dssp HHHHHHHHHHHHHHH--SCHHHHHSSTHHHHHHHHHHHHHHTTTTSCSCSSTTHHH--HHHHTT-------SHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh--cCCCccccchHHHHHHHHHHHHHHhccccccCccHHHHH--HHHHhC-------CHHHHHHHH
Confidence 456777778777654 443 3456799999999985433 33445555532 223322 222 56667
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHh
Q 007277 154 VEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASV 202 (609)
Q Consensus 154 ~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~l 202 (609)
..|++.+| .++.|..++..-..-|+..|--+-.||.+++..+|..|
T Consensus 423 ~~L~~~~~---~~~~~~~~RqaAaaYLaSflARAk~v~~~~v~~vl~~L 468 (649)
T 3tj1_A 423 VTLIDISF---AVNEAAEKKIKSLQYLGSYIARAKKLSRTQIIFVASYL 468 (649)
T ss_dssp HHHHHHHH---CSSSCHHHHHHHHHHHHHHHHHBTTCCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCCcHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77777666 45677888888888899999999999988777776654
No 42
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=40.63 E-value=1.8e+02 Score=30.52 Aligned_cols=217 Identities=14% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcc-----ccCCCCCCHHHHHHHHHHHHHHHHhcccCCch-hhHHhhHHHHHhhhhhhhccCCCccchhhh
Q 007277 8 IELEEQLKDAGN-----LLLNPPSPVDEVINLLDKVEHLLANVEQAPSR-SMRDALLPTMKGLITNDLLRRSDMDVRLSV 81 (609)
Q Consensus 8 ~ele~~l~~~G~-----kLis~pis~dELLkRLkkL~~eLs~ldQ~~~d-s~~~SL~pl~k~LVs~~LLkHkDkdVRa~V 81 (609)
.+..+.+.+.|. .++..+.....-...++.+...|+.+-.+... ........+...|+. ||.|.|.+|+..+
T Consensus 194 ~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~--LL~~~~~~v~~~a 271 (529)
T 3tpo_A 194 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR--LLHHNDPEVLADS 271 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHH--HTTSSCHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHH--HhcCCcHHHHHHH
Q ss_pred hhHHhhhhhhcCCCCCCChhHHHHHHH--HHHHHhcccCCCCCchhHHHHHHHHHhhhh--hhheeeccCCchHHHHHHH
Q 007277 82 TSCISEITRITAPDSPYDDELMKEFFQ--LAVSAFENLSHASGRYYMKALSILDTVAKV--RSCLLMLDLECDKLVVEMF 157 (609)
Q Consensus 82 AcCLaDILRIyAPDAPYtDdqLKDIF~--LfI~qf~~LaD~ssp~y~q~~yLLEsLA~V--KS~VLmlDLe~ddLI~eLF 157 (609)
+.||+.+.. .+++....|.. ++-.-..-|.+.+...-......|.+|+.- .....+++...-..+..|.
T Consensus 272 ~~aL~~l~~-------~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL 344 (529)
T 3tpo_A 272 CWAISYLTD-------GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 344 (529)
T ss_dssp HHHHHHHHS-------SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT
T ss_pred HHHHHHhhh-------hhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHH-HHHHhhccCCCCCchHHHHHHHHHhhchhhHhHHHHHHH
Q 007277 158 QHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRI-LLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAV 236 (609)
Q Consensus 158 k~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDv-IL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~I~q~l 236 (609)
+ +....|......+|..+.......-..+++. ++..|+.--....+....-|...|.+....-.+....+|
T Consensus 345 ~--------~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l 416 (529)
T 3tpo_A 345 T--------NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYL 416 (529)
T ss_dssp T--------CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred c--------CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Q ss_pred HhcCC
Q 007277 237 QSRGI 241 (609)
Q Consensus 237 ~s~G~ 241 (609)
-..|+
T Consensus 417 ~~~g~ 421 (529)
T 3tpo_A 417 VHCGI 421 (529)
T ss_dssp HHTTC
T ss_pred HHCcC
No 43
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=37.77 E-value=2.7e+02 Score=26.61 Aligned_cols=143 Identities=10% Similarity=0.121 Sum_probs=79.1
Q ss_pred hccCCCccchhhhhhHHhh-hhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheee-cc
Q 007277 69 LLRRSDMDVRLSVTSCISE-ITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLM-LD 146 (609)
Q Consensus 69 LLkHkDkdVRa~VAcCLaD-ILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLm-lD 146 (609)
.|.+++-.-|.-+..+|.. ++.= .|+....+....+++..+...+. .|.+-.--......|..||+. +- -.
T Consensus 24 ~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~--~D~n~~v~~~A~~al~~la~~----l~~~~ 96 (249)
T 2qk1_A 24 RITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQ--KDANIQAVALAAQSVELICDK----LKTPG 96 (249)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHH----HCTTT
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHh----ccccc
Confidence 4567777778777888888 8742 33322212223355555555442 243333334556666666631 01 11
Q ss_pred CCch-HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-----CCHHHHHHHHHHhhccCCCCCchHHHHHHHH
Q 007277 147 LECD-KLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-----VSWDLLRILLASVRKENQDVSPTSWKLGEKV 220 (609)
Q Consensus 147 Le~d-dLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~-----Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~V 220 (609)
+ . .....++-.+|+...+.. ..|...+..-|..+++..+. -...+++.|+..+... +|..+.-+-..
T Consensus 97 f--~~~y~~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k----~~~vk~~al~~ 169 (249)
T 2qk1_A 97 F--SKDYVSLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK----TPQIRMECTQL 169 (249)
T ss_dssp S--CHHHHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS----SHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC----ChHHHHHHHHH
Confidence 1 2 455556667777666544 45766766666666665531 1457888888776433 35555555555
Q ss_pred Hhhch
Q 007277 221 FTKCA 225 (609)
Q Consensus 221 I~~ca 225 (609)
|..|.
T Consensus 170 l~~~~ 174 (249)
T 2qk1_A 170 FNASM 174 (249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66555
No 44
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=36.97 E-value=97 Score=32.53 Aligned_cols=142 Identities=13% Similarity=0.165 Sum_probs=0.0
Q ss_pred hhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHH--HHHHHhcccCCCCCchhHHHHHHHHHhhh---hhhhe
Q 007277 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQ--LAVSAFENLSHASGRYYMKALSILDTVAK---VRSCL 142 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~--LfI~qf~~LaD~ssp~y~q~~yLLEsLA~---VKS~V 142 (609)
.||.|.+..||..+|.||+.|..- +.++...|+. ++-..+..|.+.+...-....+.|.+|+. ...+.
T Consensus 323 ~LL~~~~~~v~~~A~~aL~nl~a~-------~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~ 395 (510)
T 3ul1_B 323 SLLTNPKTNIQKEATWTMSNITAG-------RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIV 395 (510)
T ss_dssp -CTTCSSHHHHHHHHHHHHHHTTS-------CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcC-------cHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHH
Q ss_pred eeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCC--CHHHHHHH-----HHHhhccCCCCCchHHH
Q 007277 143 LMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDV--SWDLLRIL-----LASVRKENQDVSPTSWK 215 (609)
Q Consensus 143 LmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~V--p~eVLDvI-----L~~ll~~~k~~~PaA~~ 215 (609)
.+++..+-..+.+|. .....++.....+.|..|+.-.+.+ ...+...| +..+..=+...+..-|+
T Consensus 396 ~L~~~g~i~~L~~LL--------~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~ 467 (510)
T 3ul1_B 396 YLVHCGIIEPLMNLL--------SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYK 467 (510)
T ss_dssp HHHHTTCHHHHHHGG--------GCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHH
T ss_pred HHHHCCCHHHHHHHh--------cCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHH
Q ss_pred HHHHHHhhc
Q 007277 216 LGEKVFTKC 224 (609)
Q Consensus 216 LA~~VI~~c 224 (609)
.|..+|.++
T Consensus 468 ~A~~iie~y 476 (510)
T 3ul1_B 468 ASLNLIEKY 476 (510)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 45
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=35.70 E-value=23 Score=29.59 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=23.9
Q ss_pred HhhhhhhcCC-CCCCCh---hHHHHHHHHHHHH
Q 007277 85 ISEITRITAP-DSPYDD---ELMKEFFQLAVSA 113 (609)
Q Consensus 85 LaDILRIyAP-DAPYtD---dqLKDIF~LfI~q 113 (609)
|..+||+|+| ++||+. +||+....-.++.
T Consensus 28 Ih~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e 60 (74)
T 1ldd_A 28 IHSFLKITVPKDWGYNRITLQQLEGYLNTLADE 60 (74)
T ss_dssp HHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhC
Confidence 6779999999 578876 9999988877765
No 46
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=35.09 E-value=2.6e+02 Score=27.47 Aligned_cols=119 Identities=11% Similarity=0.117 Sum_probs=64.1
Q ss_pred hhccCC-CccchhhhhhHHhhhhhhcCCCCCCChhHHHH-----HHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhh
Q 007277 68 DLLRRS-DMDVRLSVTSCISEITRITAPDSPYDDELMKE-----FFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSC 141 (609)
Q Consensus 68 ~LLkHk-DkdVRa~VAcCLaDILRIyAPDAPYtDdqLKD-----IF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~ 141 (609)
.+|.+. |..||..++-||..|.+- +.+..+. +...++.. |.+.+...-.+....|.+|+....-
T Consensus 71 ~~L~~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~i~~L~~l---L~~~~~~vr~~a~~~L~~l~~~~~~ 140 (450)
T 2jdq_A 71 EFLKRKENCTLQFESAWVLTNIASG-------NSLQTRIVIQAGAVPIFIEL---LSSEFEDVQEQAVWALGNIAGDSTM 140 (450)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHSS-------CHHHHHHHHHTTHHHHHHHH---TTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcC-------CHHHHHHHHhCCCHHHHHHH---HcCCCHHHHHHHHHHHHHHccCCHH
Confidence 356777 899999999999999862 2333333 33334443 3443333344556667776653110
Q ss_pred eeeccCCchHHHH--HHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc-CC----CCHHHHHHHHHHhh
Q 007277 142 LLMLDLECDKLVV--EMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES-ED----VSWDLLRILLASVR 203 (609)
Q Consensus 142 VLmlDLe~ddLI~--eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEs-E~----Vp~eVLDvIL~~ll 203 (609)
.-+.+. ..+..+...+..+....|.......|..+.... .. +-..++..|+.-+.
T Consensus 141 -------~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~ 202 (450)
T 2jdq_A 141 -------CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202 (450)
T ss_dssp -------HHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT
T ss_pred -------HHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 011111 234445555554455667776677777776543 11 12456666665554
No 47
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=34.61 E-value=2e+02 Score=25.38 Aligned_cols=59 Identities=20% Similarity=0.185 Sum_probs=36.1
Q ss_pred hhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHH-----HHHHHHHHHhcccCCCCCchhHHHHHHHHHhh
Q 007277 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMK-----EFFQLAVSAFENLSHASGRYYMKALSILDTVA 136 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLK-----DIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA 136 (609)
.||+|.|.+||..++.||..|.+- +++... .++..++..| .+.+...-......|-+|+
T Consensus 19 ~LL~s~~~~v~~~a~~~L~~l~~~-------~~~~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 19 QQLNSPDQQELQSALRKLSQIASG-------GNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIA 82 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTS-------CHHHHHHHHHTTHHHHHHHHT---TCSCHHHHHHHHHHHHHHT
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcC-------CHHHHHHHHHcCCHHHHHHHH---cCCCHHHHHHHHHHHHHHh
Confidence 578899999999999999998742 222222 2334444443 4443334445566666665
No 48
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=33.10 E-value=1.5e+02 Score=26.81 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.2
Q ss_pred hhccCCCccchhhhhhHHhhhh
Q 007277 68 DLLRRSDMDVRLSVTSCISEIT 89 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDIL 89 (609)
.+|++.|..||..++.||..|.
T Consensus 103 ~lL~~~~~~v~~~a~~~L~~l~ 124 (252)
T 4db8_A 103 QLLSSPNEQILQEALWALSNIA 124 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHhh
Confidence 5678889999999999999985
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=32.68 E-value=2.6e+02 Score=24.75 Aligned_cols=128 Identities=12% Similarity=0.175 Sum_probs=65.7
Q ss_pred hhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccC
Q 007277 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDL 147 (609)
.+|.+.|..||..++.+|..+-. . +.+..++..| .| +...-+...+..|+.+..
T Consensus 57 ~~l~~~~~~vr~~a~~aL~~~~~---------~----~~~~~L~~~l---~~---~~~~vr~~a~~aL~~~~~------- 110 (211)
T 3ltm_A 57 KALKDEDAWVRRAAADALGQIGD---------E----RAVEPLIKAL---KD---EDGWVRQSAAVALGQIGD------- 110 (211)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCC---------G----GGHHHHHHHT---TC---SSHHHHHHHHHHHHHHCC-------
T ss_pred HHHcCCCHHHHHHHHHHHHhhCC---------H----HHHHHHHHHH---cC---CCHHHHHHHHHHHHHhCc-------
Confidence 36678899999999999988731 1 2334444443 33 334456677777776542
Q ss_pred CchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHh-hchh
Q 007277 148 ECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFT-KCAA 226 (609)
Q Consensus 148 e~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~-~ca~ 226 (609)
.+.+ ..+...+. +-...|.......|..+=+ .+.+..|+..+... .+..+.-|...+. -...
T Consensus 111 --~~~~----~~L~~~l~-d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~----~~~vr~~a~~aL~~~~~~ 173 (211)
T 3ltm_A 111 --ERAV----EPLIKALK-DEDWFVRIAAAFALGEIGD------ERAVEPLIKALKDE----DGWVRQSAADALGEIGGE 173 (211)
T ss_dssp --GGGH----HHHHHHTT-CSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCSH
T ss_pred --HHHH----HHHHHHHh-CCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCch
Confidence 1122 22222233 3334566666666665522 34555555544222 2333333333333 2334
Q ss_pred hHhHHHHHHHHh
Q 007277 227 KLKTNLKEAVQS 238 (609)
Q Consensus 227 KL~p~I~q~l~s 238 (609)
...+.|.++++.
T Consensus 174 ~~~~~L~~~l~d 185 (211)
T 3ltm_A 174 RVRAAMEKLAET 185 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhC
Confidence 556666666663
No 50
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=31.41 E-value=2.3e+02 Score=25.22 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=19.6
Q ss_pred hhccCCCccchhhhhhHHhhhhhh
Q 007277 68 DLLRRSDMDVRLSVTSCISEITRI 91 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILRI 91 (609)
.+|.+.|.+||..++-||..|.+-
T Consensus 9 ~~L~~~~~~~~~~a~~~L~~l~~~ 32 (252)
T 4hxt_A 9 KLLTSTDSETQKEAARDLAEIASG 32 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcC
Confidence 467788899999999999888754
No 51
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=29.37 E-value=1.1e+02 Score=31.83 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=39.6
Q ss_pred hhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhh
Q 007277 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAK 137 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~ 137 (609)
.+|.+.+..|+..++.||+.|.+-..|... ......++..++..+. +.+...-......|.+|+.
T Consensus 222 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~--~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPD--WSVVSQALPTLAKLIY---SMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HGGGSCCHHHHHHHHHHHHHHHCCSSSCCC--HHHHGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHHS
T ss_pred HHhccCCHHHHHHHHHHHHHHhCCCCCCCc--HHHHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhC
Confidence 356678899999999999999985434332 3344556666666553 3333233344555555553
No 52
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=26.89 E-value=1.2e+02 Score=35.95 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHH---HHhcccCCCCHHHHHHHHHHhhccC------------CCCCchHHH
Q 007277 151 KLVVEMFQHFLKVIRSNHPHFVFAAMETIMT---LVIDESEDVSWDLLRILLASVRKEN------------QDVSPTSWK 215 (609)
Q Consensus 151 dLI~eLFk~FF~iVr~~hp~kV~~~M~dILs---~VIeEsE~Vp~eVLDvIL~~ll~~~------------k~~~PaA~~ 215 (609)
.++..||+.++.+ ...+|. +......++. ..+......=..||..||..|.... +.....|..
T Consensus 529 ~~~~~Ll~~ll~~-~~~~p~-l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~ 606 (1204)
T 3a6p_A 529 NDGIELLQMVLNF-DTKDPL-ILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACS 606 (1204)
T ss_dssp HHHHHHHHHHHHC-CCSCHH-HHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCChH-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHH
Confidence 5677777775543 345665 4444444333 3333222222334455554443210 111222333
Q ss_pred HHHHHHhhchhhHhHHHHHHHH
Q 007277 216 LGEKVFTKCAAKLKTNLKEAVQ 237 (609)
Q Consensus 216 LA~~VI~~ca~KL~p~I~q~l~ 237 (609)
.-..++..|.+.|.||+.++++
T Consensus 607 al~~L~~~~~~~L~p~~~~i~~ 628 (1204)
T 3a6p_A 607 SIIKMCRDYPQLVLPNFDMLYN 628 (1204)
T ss_dssp HHHHHHHHCHHHHGGGHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3347899999999888876665
No 53
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=26.45 E-value=2.7e+02 Score=34.14 Aligned_cols=143 Identities=14% Similarity=0.185 Sum_probs=87.0
Q ss_pred hhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHH
Q 007277 82 TSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFL 161 (609)
Q Consensus 82 AcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF 161 (609)
..+|+++|| |-|.+.+++..|..=|++.|..|.-.+=|.+-.+.-+|-+-..-+. || .=|..+|..++
T Consensus 174 li~l~~mFr----Dv~Ls~eel~~VV~Kv~~~l~~l~l~ElPpLvyQLLlLs~kg~k~~-IL-------~gl~~yF~~~~ 241 (1308)
T 3s51_A 174 MIQLTSVFK----DVCLTPEEMNLVVAKVLTMFSKLNLQEIPPLVYQLLVLSSKGSRRS-VL-------DGIIAFFRELD 241 (1308)
T ss_dssp HHHHHHHGG----GSCCCHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHTTSCHHH-HH-------HHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCCCHHHHHHHHHHHHHhhhcCChhhchHHHHHHHHHhcccchHH-HH-------HHHHHHHHHhh
Confidence 455667776 6799999999999999999999998899988888777766654332 22 13455665554
Q ss_pred HHhhc-----------CCc-hhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCC---CCchHHHHHHHHHhhchh
Q 007277 162 KVIRS-----------NHP-HFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQD---VSPTSWKLGEKVFTKCAA 226 (609)
Q Consensus 162 ~iVr~-----------~hp-~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~---~~PaA~~LA~~VI~~ca~ 226 (609)
.-.+. .+| ..++..-.+||-.|--. -...+++...+|..|....+. .....|.+|.-+.-.--.
T Consensus 242 ~~~~~~~~~~~~~d~~~~s~~elr~vEgTVL~HI~~A-ik~D~~Lgre~LK~~K~~~~~~p~~~l~PF~lalLLsvarI~ 320 (1308)
T 3s51_A 242 KQHREEQSSDELSELITAPADELYHVEGTVILHIVFA-IKLDCELGRELLKHLKAGQQGDPSKCLCPFSIALLLSLTRIQ 320 (1308)
T ss_dssp HHHHHHHCC-------CCSHHHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHCCSSTHHHHHHCCHHHHHHHHHHTTSG
T ss_pred hhcchhccCCcccccccCCHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHhhhcccCccccCChHHHHHHHHHhcch
Confidence 32211 244 44555555666655333 257888889999888765421 223334444333222223
Q ss_pred hHhHHHHHHHH
Q 007277 227 KLKTNLKEAVQ 237 (609)
Q Consensus 227 KL~p~I~q~l~ 237 (609)
+++..+..+|.
T Consensus 321 Rf~e~v~d~Lk 331 (1308)
T 3s51_A 321 RFEEQVFDLLK 331 (1308)
T ss_dssp GGHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 44444444444
No 54
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=25.26 E-value=1.7e+02 Score=33.72 Aligned_cols=41 Identities=20% Similarity=0.394 Sum_probs=29.4
Q ss_pred CccchhhhhhHHhhhhhhcCCCCCCC---hhHHHHHHHHHHHHhcc
Q 007277 74 DMDVRLSVTSCISEITRITAPDSPYD---DELMKEFFQLAVSAFEN 116 (609)
Q Consensus 74 DkdVRa~VAcCLaDILRIyAPDAPYt---DdqLKDIF~LfI~qf~~ 116 (609)
+.++|..+.-||.+|+....| |++ +..+..+|..++.++..
T Consensus 247 ~~~~~~~a~~~L~~i~~~~~~--~~~~~~~~~~~~l~~~~l~~l~~ 290 (1049)
T 3m1i_C 247 SPDTRAITLKCLTEVSNLKIP--QDNDLIKRQTVLFFQNTLQQIAT 290 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHCCCC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHHHHHHHHHHH
Confidence 788999999999999988544 332 24666777777775543
No 55
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=24.75 E-value=1.6e+02 Score=28.94 Aligned_cols=124 Identities=8% Similarity=0.108 Sum_probs=61.9
Q ss_pred hccC-CCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccC
Q 007277 69 LLRR-SDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (609)
Q Consensus 69 LLkH-kDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDL 147 (609)
+|.+ .+..||..++.||..|.+-..|...+ ..+..++..++..+. +.+..........|.+|+....-.
T Consensus 157 ~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~l~~~~~~~----- 226 (450)
T 2jdq_A 157 LFSKQNRLTMTRNAVWALSNLCRGKSPPPEF--AKVSPCLNVLSWLLF---VSDTDVLADACWALSYLSDGPNDK----- 226 (450)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHCCSSSCCCG--GGTGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHTSSSHHH-----
T ss_pred HhcCCCCHHHHHHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHCCCcHH-----
Confidence 4554 78899999999999999864444432 223555555555543 333323334445555554321000
Q ss_pred CchHHH-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-----CCHHHHHHHHHHhhc
Q 007277 148 ECDKLV-VEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-----VSWDLLRILLASVRK 204 (609)
Q Consensus 148 e~ddLI-~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~-----Vp~eVLDvIL~~ll~ 204 (609)
...++ ..++..++..+.. ....|.......|..+....+. +...++..|+.-+..
T Consensus 227 -~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 227 -IQAVIDAGVCRRLVELLMH-NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp -HHHHHHTTTHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred -HHHHHHcCcHHHHHHHHCC-CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC
Confidence 00111 1234444444442 2345655556666665544321 122455555555443
No 56
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=24.56 E-value=5.4e+02 Score=25.71 Aligned_cols=75 Identities=11% Similarity=0.088 Sum_probs=38.9
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHH---HHHHHHhhccCCCCCchHHHHHHHHHhhchhhHhHH
Q 007277 156 MFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLL---RILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTN 231 (609)
Q Consensus 156 LFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVL---DvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~ 231 (609)
+|..+.+.++..++ .+..-..+.|..+|+....-|...+ ..|...|-..+.+..-+|-+.-..+....++++..+
T Consensus 168 v~~~l~~g~ksKN~-R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~ 245 (266)
T 2of3_A 168 MTPMLLDALKSKNA-RQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKA 245 (266)
T ss_dssp HHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHccCCH-HHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44455555555553 4445555667778888765555555 445554544444333344333344444445554443
No 57
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=24.03 E-value=3.6e+02 Score=23.57 Aligned_cols=105 Identities=13% Similarity=0.163 Sum_probs=55.1
Q ss_pred hhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHH-HHHH-hcccCCCCCchhHHHHHHHHHhhhhhhheeec
Q 007277 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQL-AVSA-FENLSHASGRYYMKALSILDTVAKVRSCLLML 145 (609)
Q Consensus 68 ~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~L-fI~q-f~~LaD~ssp~y~q~~yLLEsLA~VKS~VLml 145 (609)
.+|.+.|..||..++.||..|.+- +++....|+.. .+.. +.-|.+.+...-......|.+|+.-..-.
T Consensus 61 ~lL~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--- 130 (210)
T 4db6_A 61 QLLSSPNEQILQEALWALSNIASG-------GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--- 130 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTS-------CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH---
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcC-------CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHH---
Confidence 567888999999999999998741 22332333220 1122 23344444334445566777776321000
Q ss_pred cCCchHHH-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcc
Q 007277 146 DLECDKLV-VEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186 (609)
Q Consensus 146 DLe~ddLI-~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeE 186 (609)
...++ ...+..+...++.. ...|......+|..+...
T Consensus 131 ---~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 131 ---IQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASG 168 (210)
T ss_dssp ---HHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS
T ss_pred ---HHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence 01111 12345555555544 456666666667766654
No 58
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.35 E-value=1.7e+02 Score=30.47 Aligned_cols=74 Identities=23% Similarity=0.226 Sum_probs=38.1
Q ss_pred HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhh
Q 007277 8 IELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISE 87 (609)
Q Consensus 8 ~ele~~l~~~G~kLis~pis~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaD 87 (609)
..+++.+.+-|-..+.+ |.+|...|.++=++... .+.+-...++-+.+..+.+.+- ||++..|.+--
T Consensus 180 ~~~~e~~~~~~L~~l~~----------~~~l~~~L~~~l~~~~~--~~~i~~wik~n~~~~~~~~~~f-ir~L~t~v~~~ 246 (364)
T 3l6a_A 180 DRMLEILEGKGLSFLFP----------LLKLEKELLKQIKLDPS--PQTIYKWIKDNISPKLHVDKGF-VNILMTSFLQY 246 (364)
T ss_dssp HHHHHHHHHHTCGGGCH----------HHHHHHHHHHHHHHCCC--HHHHHHHHHHHSCHHHHTCHHH-HHHHHHHHHHH
T ss_pred hHHHHHHHhCCCcccCC----------HHHHHHHHHHHHHcCCC--hHHHHHHHHHhCCcccCCCHHH-HHHHHHHHHHH
Confidence 34566666666544431 23444444444332222 3445555666666666555544 67666666666
Q ss_pred hhhhcCC
Q 007277 88 ITRITAP 94 (609)
Q Consensus 88 ILRIyAP 94 (609)
|.+-..|
T Consensus 247 ~~~~~~~ 253 (364)
T 3l6a_A 247 ISSEVNP 253 (364)
T ss_dssp HHHHHC-
T ss_pred HHHhccc
Confidence 6554444
No 59
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=22.92 E-value=4.7e+02 Score=28.51 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=60.0
Q ss_pred hccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhc-ccCCCCCchhHHHHHHHHHhhhhhhheeeccC
Q 007277 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFE-NLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (609)
Q Consensus 69 LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~-~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDL 147 (609)
++.++|..+|-++-.++..++. +. . |+..+++.+|. .|.|+ ++++ +-.-|.+|+.++.
T Consensus 82 l~~s~~~~~Krl~YL~l~~~~~----~~---~----e~~~L~iN~l~kDl~~~-n~~i--r~lALr~L~~i~~------- 140 (621)
T 2vgl_A 82 LLSSNRYTEKQIGYLFISVLVN----SN---S----ELIRLINNAIKNDLASR-NPTF--MGLALHCIANVGS------- 140 (621)
T ss_dssp GGGCSCHHHHHHHHHHHHHSCC----CC---H----HHHHHHHHHHHHHHHSC-CHHH--HHHHHHHHHHHCC-------
T ss_pred HhcCCCHHHHHHHHHHHHHHcc----CC---c----HHHHHHHHHHHHhcCCC-CHHH--HHHHHHHhhccCC-------
Confidence 6677788888766666665552 21 1 44567777765 55543 3433 6677888888764
Q ss_pred CchHHHHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhcccC-CCCH-HHHHHHHHHh
Q 007277 148 ECDKLVVEMFQHFLKVIR-SNHPHFVFAAMETIMTLVIDESE-DVSW-DLLRILLASV 202 (609)
Q Consensus 148 e~ddLI~eLFk~FF~iVr-~~hp~kV~~~M~dILs~VIeEsE-~Vp~-eVLDvIL~~l 202 (609)
.+++..+...++..+. .+...-|+....--+..+..-.. .++. .+++.|..-|
T Consensus 141 --~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL 196 (621)
T 2vgl_A 141 --REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLL 196 (621)
T ss_dssp --HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHh
Confidence 3466666666666552 23344555444433333333322 2332 4445444433
No 60
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=21.90 E-value=4.2e+02 Score=23.48 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=56.3
Q ss_pred HHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHH-----HHHHHHHHHhcccCCCCCchhHHHHHHHHH
Q 007277 60 TMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMK-----EFFQLAVSAFENLSHASGRYYMKALSILDT 134 (609)
Q Consensus 60 l~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLK-----DIF~LfI~qf~~LaD~ssp~y~q~~yLLEs 134 (609)
+...|+ .+|++.|.+||..++.||..|..- .++.-. +++..++..+ .+.+...-.....+|.+
T Consensus 45 ~i~~L~--~ll~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~i~~l~~ll---~~~~~~v~~~a~~~L~~ 112 (252)
T 4hxt_A 45 GVEVLV--KLLTSTDSEVQKEAARALANIASG-------PDEAIKAIVDAGGVEVLVKLL---TSTDSEVQKEAARALAN 112 (252)
T ss_dssp HHHHHH--HHTTCSCHHHHHHHHHHHHHHTTS-------CHHHHHHHHHTTHHHHHHHHT---TCSSHHHHHHHHHHHHH
T ss_pred CHHHHH--HHHhCCCHHHHHHHHHHHHHHHcC-------ChHHHHHHHHCCCHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 334444 577889999999999999988642 122112 2344444444 34444455566777777
Q ss_pred hhhh--hhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcc
Q 007277 135 VAKV--RSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186 (609)
Q Consensus 135 LA~V--KS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeE 186 (609)
|+.. .....+.+. ..+..++...+... ..+......+|..+...
T Consensus 113 l~~~~~~~~~~~~~~-------~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 113 IASGPDEAIKAIVDA-------GGVEVLVKLLTSTD-SEVQKEAARALANIASG 158 (252)
T ss_dssp HTTSCHHHHHHHHHT-------THHHHHHHHTTCSC-HHHHHHHHHHHHHHTTS
T ss_pred HHcCCHHHHHHHHHC-------CCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC
Confidence 7632 111111111 13344444444333 44555555566655543
No 61
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=21.00 E-value=8e+02 Score=28.76 Aligned_cols=185 Identities=10% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCC------ccchhhhhhHHhhhhhhcCCCCCCChhH
Q 007277 29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSD------MDVRLSVTSCISEITRITAPDSPYDDEL 102 (609)
Q Consensus 29 dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkD------kdVRa~VAcCLaDILRIyAPDAPYtDdq 102 (609)
.+.|..+..+-+++...-.+...-+.+++-..--.+++++|=.|+| +=.++++.+|..-+|.+ ..++
T Consensus 774 ~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~-------~~~~ 846 (1023)
T 4hat_C 774 AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLEL-------PPAA 846 (1023)
T ss_dssp HHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTS-------CHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcC-------CHHH
Q ss_pred HHHH-------------------HHHHHHHhcccCCCCCchhHHHHHHHHHhhhh-hhheeeccCC---chHHHHHHHHH
Q 007277 103 MKEF-------------------FQLAVSAFENLSHASGRYYMKALSILDTVAKV-RSCLLMLDLE---CDKLVVEMFQH 159 (609)
Q Consensus 103 LKDI-------------------F~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~V-KS~VLmlDLe---~ddLI~eLFk~ 159 (609)
++.| ++++..-+.++....++-|.+.||-=--+.-+ ..+.+|+|-. .=.+-..++..
T Consensus 847 ~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~~l~~ 926 (1023)
T 4hat_C 847 FKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMK 926 (1023)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHH
Q ss_pred HHHHhhcC--------------CchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhch
Q 007277 160 FLKVIRSN--------------HPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCA 225 (609)
Q Consensus 160 FF~iVr~~--------------hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca 225 (609)
.|.++-.+ ...+......-|...+..-...++++-+..++..+.....+ .
T Consensus 927 l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp~~~~~qi~~fv~~l~~~~~~----------------~ 990 (1023)
T 4hat_C 927 LISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQCKD----------------L 990 (1023)
T ss_dssp HHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTTC----------------H
T ss_pred HHHHHHcCCcccccCCccccCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCC----------------H
Q ss_pred hhHhHHHHHHH
Q 007277 226 AKLKTNLKEAV 236 (609)
Q Consensus 226 ~KL~p~I~q~l 236 (609)
.+++..+..|+
T Consensus 991 ~~f~~~lrdfl 1001 (1023)
T 4hat_C 991 VVFKGTLRDFL 1001 (1023)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
No 62
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=20.87 E-value=3.2e+02 Score=27.43 Aligned_cols=81 Identities=10% Similarity=0.127 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccCCc-------hhhHHhhHHHHHhhhhhhhccCCCccchhhhhhH--HhhhhhhcCCC
Q 007277 25 PSPVDEVINLLDKVEHLLANVEQAPS-------RSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSC--ISEITRITAPD 95 (609)
Q Consensus 25 pis~dELLkRLkkL~~eLs~ldQ~~~-------ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcC--LaDILRIyAPD 95 (609)
.++++.|++.|..|...|-.+-+-.. +=...+|.++.+++. ++|-+.| |.-||+-| -+
T Consensus 172 ~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~------------~lY~~i~~gi~~lLe~~-fe 238 (299)
T 1hx8_A 172 SMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLI------------RLFACYNDGIINLLEKY-FD 238 (299)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH-TT
T ss_pred hCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH-hc
Confidence 45688898888888877776543111 112345555544432 5555544 44466554 35
Q ss_pred CCCCh-hHHHHHHHHHHHHhcccC
Q 007277 96 SPYDD-ELMKEFFQLAVSAFENLS 118 (609)
Q Consensus 96 APYtD-dqLKDIF~LfI~qf~~La 118 (609)
..+.| .+--+||+-|..|+..|.
T Consensus 239 m~~~d~~~al~iykrf~~q~~~L~ 262 (299)
T 1hx8_A 239 MNKKHARDALDLYKKFLVRMDRVG 262 (299)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 555569999999998876
No 63
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=20.60 E-value=3.5e+02 Score=23.44 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhhHhHHH
Q 007277 155 EMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNL 232 (609)
Q Consensus 155 eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~I 232 (609)
+-|...+..++ .....+...+.- +|+-. .-..+++++|...|.......--+..-|+-+|+.+|..+-.+|.
T Consensus 7 ~~l~~~L~~L~-~s~~sI~~~s~w----~l~~~-~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~ 78 (135)
T 4fu3_A 7 SALEKKLSELS-NSQQSVQTLSLW----LIHHR-KHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFT 78 (135)
T ss_dssp HHHHHHHHHCC-SSTTHHHHHHHH----HHHTG-GGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHH
T ss_pred HHHHHHHHHcc-ccHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 34555555444 233444444333 33333 23677889999888766655445566678899988876544443
Done!