BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007278
(609 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 31/158 (19%)
Query: 47 VIFSFPGSWTISDWFSRSPFGEKMIDPHPPQFASLRSIGNDQVATV--NEAFLTRFQAIL 104
++ SF GS +I +W F K I ND + ++ F + ++++
Sbjct: 76 IVLSFRGSRSIENWIGNLNFDLKEI--------------NDICSGCRGHDGFTSSWRSVA 121
Query: 105 PQLQNEVVKAVAERK--QIVFTGHSSAGPIAVLMTVWFLENWENFIKSDPSTSRMPPICV 162
L+ +V AV E ++VFTGHS G +A + +D +
Sbjct: 122 DTLRQKVEDAVREHPDYRVVFTGHSLGGALATVA------------GADLRGNGYDIDVF 169
Query: 163 TFGSPLVGDFIINHALRRESWSHYFIHFVMRYDIVPRV 200
++G+P VG+ L ++ + DIVPR+
Sbjct: 170 SYGAPRVGNRAFAEFLTVQTGGTLY-RITHTNDIVPRL 206
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 31/158 (19%)
Query: 47 VIFSFPGSWTISDWFSRSPFGEKMIDPHPPQFASLRSIGNDQVATV--NEAFLTRFQAIL 104
++ SF GS +I +W F K I ND + ++ F + ++++
Sbjct: 76 IVLSFRGSRSIENWIGNLNFDLKEI--------------NDICSGCRGHDGFTSSWRSVA 121
Query: 105 PQLQNEVVKAVAERK--QIVFTGHSSAGPIAVLMTVWFLENWENFIKSDPSTSRMPPICV 162
L+ +V AV E ++VFTGH+ G +A + +D +
Sbjct: 122 DTLRQKVEDAVREHPDYRVVFTGHALGGALATVA------------GADLRGNGYDIDVF 169
Query: 163 TFGSPLVGDFIINHALRRESWSHYFIHFVMRYDIVPRV 200
++G+P VG+ L ++ + DIVPR+
Sbjct: 170 SYGAPRVGNRAFAEFLTVQTGGTLY-RITHTNDIVPRL 206
>pdb|3MR0|A Chain A, Crystal Structure Of Sensory Box Histidine KinaseRESPONSE
REGULATOR From Burkholderia Thailandensis E264
pdb|3MR0|B Chain B, Crystal Structure Of Sensory Box Histidine KinaseRESPONSE
REGULATOR From Burkholderia Thailandensis E264
Length = 142
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 460 YELPDEFEGHREWINIGTRYRRIVEPLDIANYYRHLKNEDTGP--YMKRGRPKRYRYTQR 517
+ELPDE GHRE I+ R R +A HL++ DT Y R R +R+ Q
Sbjct: 47 HELPDEITGHRESIHPDDRARV------LAALKAHLEHRDTYDVEYRVRTRSGDFRWIQS 100
Query: 518 WLEYALKISAGSSGESCFWARIEDLCLRTINMGLFEDVKEEILSL 562
AL SAG W I D+ R + +EE+ L
Sbjct: 101 -RGQALWNSAGEPYRXVGW--IXDVTDRKRDEDALRVSREELRRL 142
>pdb|2J0P|A Chain A, Structure Of The Haem-Chaperone Proteobacteria-Protein
Hems
Length = 345
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 80 SLRSIGNDQVATVNEAFLTRFQAILPQLQNEVVKAVAERKQI-VFTG 125
+ R++GND V+ + LT+ I Q QNE++ V R + +FTG
Sbjct: 212 AFRAVGNDLAYQVDNSSLTQLLNIAQQEQNEIMIFVGNRGCVQIFTG 258
>pdb|2J0R|A Chain A, Structure Of The Haem-Chaperone Proteobacteria-Protein
Hems
Length = 345
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 80 SLRSIGNDQVATVNEAFLTRFQAILPQLQNEVVKAVAERKQI-VFTG 125
+ R++GND V+ + LT+ I Q QNE++ V R + +FTG
Sbjct: 212 AFRAVGNDLAYQVDNSSLTQLLNIAQQEQNEIMIFVGNRGCVQIFTG 258
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
pdb|3L0O|B Chain B, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
Length = 427
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 12 MKEEVIKKACSIAMKAHKLPEKQLYLVEKNRG--------SSDVIFSFPGSWTISDWFSR 63
M EE +K SI+ + + KQLY + K+ G D+IF+ + T S +
Sbjct: 1 MSEE--QKTISIS-ELESMNIKQLYEIAKSLGIPRYTSMRKRDLIFAILKAQTESTGYF- 56
Query: 64 SPFGEKMIDPHPPQFASLRSIGNDQVATVNEAFLTRFQ 101
FGE +++ HP F LR I ++ + + ++ +++ Q
Sbjct: 57 --FGEGVLEIHPEGFGFLRRIEDNLLPSNDDIYISPSQ 92
>pdb|2VD2|A Chain A, The Crystal Structure Of Hisg From B. Subtilis
Length = 214
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 449 IFDEIMEMLKR--YELPDEFEGHREW-INIGTRYRRIV--EPLDIANYYRH 494
IF+E +L++ Y LP+EFE R+ I++ R + +P+D+ Y H
Sbjct: 15 IFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEENLRFILAKPMDVTTYVEH 65
>pdb|3K9T|A Chain A, Crystal Structure Of Putative Peptidase (np_348812.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
Length = 435
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 2 ASERLGEVISMKEEVIKKACSIA----MKAHKLPEKQ--LYLVEKNRGSSDVIFSFPGSW 55
+SE GE+ ++ EE+ SI K + K L + E G+ ++ P W
Sbjct: 12 SSETGGEIYNLIEELFPICRSITGNGVRKTXDIIRKHIPLEIHEVKSGTKVFDWTVPKEW 71
Query: 56 TISDWFSRSPFGEKMID 72
I D + R+ GEK+ID
Sbjct: 72 NIKDAYVRNSKGEKVID 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,651,300
Number of Sequences: 62578
Number of extensions: 714894
Number of successful extensions: 1665
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1665
Number of HSP's gapped (non-prelim): 9
length of query: 609
length of database: 14,973,337
effective HSP length: 105
effective length of query: 504
effective length of database: 8,402,647
effective search space: 4234934088
effective search space used: 4234934088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)