Query 007279
Match_columns 609
No_of_seqs 232 out of 390
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 21:25:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07173 DUF1399: Protein of u 100.0 2.3E-35 5E-40 274.9 7.9 135 99-243 1-136 (136)
2 PF07173 DUF1399: Protein of u 99.9 5.1E-22 1.1E-26 185.5 6.1 81 16-103 56-136 (136)
3 COG4278 Uncharacterized conser 98.7 1.8E-08 3.8E-13 101.2 5.7 91 190-284 56-146 (269)
4 cd04013 C2_SynGAP_like C2 doma 98.1 3.9E-05 8.4E-10 73.1 12.6 124 330-465 8-141 (146)
5 cd04042 C2A_MCTP_PRT C2 domain 97.9 0.00017 3.6E-09 65.0 12.6 117 334-464 1-121 (121)
6 cd08678 C2_C21orf25-like C2 do 97.8 0.00032 7E-09 63.8 12.9 121 336-469 2-126 (126)
7 cd08400 C2_Ras_p21A1 C2 domain 97.8 0.00036 7.8E-09 63.8 12.8 119 333-464 4-124 (126)
8 cd08682 C2_Rab11-FIP_classI C2 97.5 0.001 2.2E-08 60.5 11.0 104 335-447 1-112 (126)
9 cd04016 C2_Tollip C2 domain pr 97.5 0.0016 3.5E-08 60.0 11.8 114 335-461 4-120 (121)
10 cd04015 C2_plant_PLD C2 domain 97.5 0.002 4.3E-08 61.6 12.8 98 353-463 58-158 (158)
11 cd04043 C2_Munc13_fungal C2 do 97.3 0.0043 9.4E-08 55.9 12.3 105 335-445 3-111 (126)
12 cd04050 C2B_Synaptotagmin-like 97.3 0.0023 4.9E-08 56.5 10.0 99 335-445 2-103 (105)
13 cd04019 C2C_MCTP_PRT_plant C2 97.3 0.0037 8.1E-08 59.4 12.0 121 335-464 2-133 (150)
14 cd08409 C2B_Synaptotagmin-15 C 97.1 0.0025 5.3E-08 59.4 8.8 100 335-441 17-135 (137)
15 cd08376 C2B_MCTP_PRT C2 domain 97.0 0.014 3E-07 51.9 12.5 102 335-447 2-106 (116)
16 cd08379 C2D_MCTP_PRT_plant C2 97.0 0.011 2.4E-07 54.9 12.1 118 335-458 2-125 (126)
17 cd08385 C2A_Synaptotagmin-1-5- 97.0 0.0067 1.4E-07 54.7 10.1 98 335-443 18-123 (124)
18 cd04033 C2_NEDD4_NEDD4L C2 dom 96.9 0.016 3.4E-07 52.8 12.5 122 335-462 2-132 (133)
19 cd08373 C2A_Ferlin C2 domain f 96.9 0.017 3.6E-07 52.5 12.2 115 339-467 2-120 (127)
20 cd04031 C2A_RIM1alpha C2 domai 96.9 0.009 2E-07 53.6 10.3 100 334-442 17-124 (125)
21 cd08681 C2_fungal_Inn1p-like C 96.9 0.011 2.3E-07 52.7 10.7 99 335-446 3-106 (118)
22 cd04022 C2A_MCTP_PRT_plant C2 96.9 0.013 2.8E-07 53.3 11.4 118 335-463 2-126 (127)
23 cd08688 C2_KIAA0528-like C2 do 96.9 0.0061 1.3E-07 54.2 9.1 99 336-444 2-109 (110)
24 cd08382 C2_Smurf-like C2 domai 96.9 0.016 3.5E-07 52.7 11.9 105 334-448 1-109 (123)
25 cd04029 C2A_SLP-4_5 C2 domain 96.8 0.012 2.5E-07 54.0 10.6 100 335-443 17-125 (125)
26 cd08685 C2_RGS-like C2 domain 96.8 0.0066 1.4E-07 55.3 8.8 101 335-442 14-119 (119)
27 cd08378 C2B_MCTP_PRT_plant C2 96.8 0.012 2.6E-07 53.7 10.4 99 335-447 2-106 (121)
28 cd04036 C2_cPLA2 C2 domain pre 96.7 0.038 8.2E-07 49.6 12.9 100 335-445 2-106 (119)
29 cd08387 C2A_Synaptotagmin-8 C2 96.7 0.015 3.3E-07 52.4 10.3 101 335-443 18-123 (124)
30 cd00276 C2B_Synaptotagmin C2 d 96.7 0.003 6.6E-08 57.1 5.5 102 335-446 16-124 (134)
31 cd04011 C2B_Ferlin C2 domain s 96.6 0.022 4.7E-07 50.6 10.6 98 334-444 5-110 (111)
32 cd08392 C2A_SLP-3 C2 domain fi 96.6 0.018 3.9E-07 53.3 10.4 102 335-442 17-127 (128)
33 cd04024 C2A_Synaptotagmin-like 96.6 0.033 7.1E-07 50.0 11.8 106 335-448 3-113 (128)
34 cd08388 C2A_Synaptotagmin-4-11 96.6 0.024 5.3E-07 52.1 10.9 103 335-444 18-128 (128)
35 cd04014 C2_PKC_epsilon C2 doma 96.6 0.029 6.2E-07 51.3 11.3 103 335-445 6-119 (132)
36 cd08394 C2A_Munc13 C2 domain f 96.6 0.015 3.2E-07 54.6 9.4 98 335-445 4-102 (127)
37 cd04030 C2C_KIAA1228 C2 domain 96.5 0.019 4.1E-07 51.7 9.5 102 335-443 18-127 (127)
38 cd08381 C2B_PI3K_class_II C2 d 96.5 0.022 4.7E-07 52.1 9.9 99 335-442 15-121 (122)
39 cd04044 C2A_Tricalbin-like C2 96.5 0.039 8.4E-07 49.2 11.4 116 335-464 4-124 (124)
40 cd04028 C2B_RIM1alpha C2 domai 96.5 0.041 8.9E-07 52.5 12.0 105 335-448 31-142 (146)
41 cd08389 C2A_Synaptotagmin-14_1 96.5 0.025 5.3E-07 51.7 10.1 101 335-444 18-124 (124)
42 cd08393 C2A_SLP-1_2 C2 domain 96.5 0.026 5.5E-07 51.6 10.1 100 334-442 16-124 (125)
43 cd08675 C2B_RasGAP C2 domain s 96.4 0.024 5.3E-07 52.9 10.1 104 336-448 2-124 (137)
44 cd08408 C2B_Synaptotagmin-14_1 96.4 0.022 4.7E-07 53.4 9.7 102 335-442 17-137 (138)
45 cd08406 C2B_Synaptotagmin-12 C 96.4 0.02 4.3E-07 53.7 9.4 101 335-442 17-135 (136)
46 cd04026 C2_PKC_alpha_gamma C2 96.4 0.022 4.8E-07 51.9 9.4 104 335-448 15-125 (131)
47 cd08386 C2A_Synaptotagmin-7 C2 96.4 0.03 6.5E-07 50.4 10.1 100 334-444 17-125 (125)
48 cd04051 C2_SRC2_like C2 domain 96.4 0.037 7.9E-07 49.9 10.7 105 335-447 2-117 (125)
49 cd04040 C2D_Tricalbin-like C2 96.4 0.038 8.3E-07 48.9 10.7 103 336-448 2-107 (115)
50 cd04045 C2C_Tricalbin-like C2 96.4 0.021 4.5E-07 52.0 9.0 103 335-448 3-107 (120)
51 cd08402 C2B_Synaptotagmin-1 C2 96.4 0.016 3.6E-07 53.2 8.4 85 335-425 17-109 (136)
52 cd04010 C2B_RasA3 C2 domain se 96.3 0.032 6.8E-07 53.2 10.2 104 335-447 2-125 (148)
53 PLN02270 phospholipase D alpha 96.0 0.048 1E-06 64.4 11.7 128 335-475 10-160 (808)
54 cd08390 C2A_Synaptotagmin-15-1 96.0 0.08 1.7E-06 47.4 10.7 99 335-444 16-123 (123)
55 cd04035 C2A_Rabphilin_Doc2 C2 96.0 0.063 1.4E-06 48.4 10.0 90 335-430 17-114 (123)
56 cd08403 C2B_Synaptotagmin-3-5- 96.0 0.039 8.5E-07 50.6 8.7 103 335-447 16-125 (134)
57 cd08383 C2A_RasGAP C2 domain ( 96.0 0.13 2.9E-06 45.4 11.9 111 335-461 2-116 (117)
58 cd08391 C2A_C2C_Synaptotagmin_ 95.9 0.1 2.2E-06 46.3 10.9 99 335-445 3-110 (121)
59 cd08384 C2B_Rabphilin_Doc2 C2 95.9 0.067 1.4E-06 48.8 10.0 100 335-445 15-122 (133)
60 cd04049 C2_putative_Elicitor-r 95.8 0.058 1.3E-06 48.6 9.2 101 335-447 3-111 (124)
61 PLN03008 Phospholipase D delta 95.8 0.07 1.5E-06 63.3 11.9 146 353-511 77-256 (868)
62 cd04041 C2A_fungal C2 domain f 95.8 0.063 1.4E-06 47.8 9.1 98 335-443 3-107 (111)
63 cd08377 C2C_MCTP_PRT C2 domain 95.7 0.21 4.5E-06 44.4 12.0 99 335-446 3-103 (119)
64 cd04020 C2B_SLP_1-2-3-4 C2 dom 95.7 0.06 1.3E-06 51.8 9.1 101 335-444 29-138 (162)
65 cd08405 C2B_Synaptotagmin-7 C2 95.7 0.075 1.6E-06 48.9 9.4 101 335-445 17-124 (136)
66 cd04021 C2_E3_ubiquitin_ligase 95.7 0.098 2.1E-06 47.8 10.1 104 334-446 3-110 (125)
67 cd04025 C2B_RasA1_RasA4 C2 dom 95.7 0.2 4.3E-06 45.1 12.0 102 335-447 2-106 (123)
68 cd08404 C2B_Synaptotagmin-4 C2 95.6 0.1 2.2E-06 48.1 9.8 101 334-445 16-124 (136)
69 cd04054 C2A_Rasal1_RasA4 C2 do 95.5 0.22 4.7E-06 45.2 11.5 115 335-461 2-120 (121)
70 cd08680 C2_Kibra C2 domain fou 95.4 0.091 2E-06 48.6 9.0 100 335-442 16-124 (124)
71 cd00275 C2_PLC_like C2 domain 95.4 0.41 8.9E-06 42.8 13.1 104 333-448 2-114 (128)
72 cd08521 C2A_SLP C2 domain firs 95.4 0.14 3E-06 45.8 9.6 99 335-442 16-123 (123)
73 cd08395 C2C_Munc13 C2 domain t 95.3 0.24 5.2E-06 45.7 11.1 102 335-445 2-113 (120)
74 cd00030 C2 C2 domain. The C2 d 95.1 0.14 3E-06 41.6 8.3 95 336-441 2-101 (102)
75 cd08375 C2_Intersectin C2 doma 95.1 0.47 1E-05 44.3 12.6 116 333-462 15-135 (136)
76 cd04017 C2D_Ferlin C2 domain f 95.0 0.48 1E-05 43.7 12.5 115 334-462 2-131 (135)
77 smart00239 C2 Protein kinase C 95.0 0.23 4.9E-06 40.9 9.2 90 335-430 2-95 (101)
78 cd08407 C2B_Synaptotagmin-13 C 94.9 0.17 3.6E-06 47.8 9.3 85 335-425 17-111 (138)
79 cd04047 C2B_Copine C2 domain s 94.8 0.2 4.3E-06 44.1 9.0 93 337-436 4-106 (110)
80 cd04046 C2_Calpain C2 domain p 94.7 0.84 1.8E-05 41.6 13.0 115 335-464 5-123 (126)
81 cd08690 C2_Freud-1 C2 domain f 94.7 0.37 8E-06 46.6 11.1 101 335-444 4-121 (155)
82 cd08401 C2A_RasA2_RasA3 C2 dom 94.7 0.79 1.7E-05 41.7 12.7 101 335-445 2-105 (121)
83 PF00168 C2: C2 domain; Inter 94.6 0.25 5.4E-06 40.1 8.4 79 335-421 1-85 (85)
84 cd04009 C2B_Munc13-like C2 dom 94.5 0.27 5.8E-06 45.3 9.3 91 335-430 18-119 (133)
85 cd08410 C2B_Synaptotagmin-17 C 94.3 0.27 5.8E-06 45.5 8.9 85 335-424 16-107 (135)
86 cd04027 C2B_Munc13 C2 domain s 94.3 1.2 2.6E-05 40.7 13.0 104 334-447 2-115 (127)
87 cd08691 C2_NEDL1-like C2 domai 94.2 0.7 1.5E-05 43.5 11.5 108 336-445 4-122 (137)
88 cd08676 C2A_Munc13-like C2 dom 94.1 0.36 7.7E-06 46.5 9.5 97 332-442 27-153 (153)
89 cd04038 C2_ArfGAP C2 domain pr 93.8 0.4 8.6E-06 45.6 9.2 91 335-434 4-95 (145)
90 cd04032 C2_Perforin C2 domain 93.6 0.58 1.3E-05 43.6 9.8 93 330-430 25-120 (127)
91 cd04052 C2B_Tricalbin-like C2 93.5 0.22 4.7E-06 44.5 6.5 73 378-464 36-110 (111)
92 cd04039 C2_PSD C2 domain prese 92.9 0.62 1.4E-05 41.8 8.5 88 335-430 3-98 (108)
93 cd04037 C2E_Ferlin C2 domain f 92.7 0.91 2E-05 41.4 9.4 87 335-429 2-93 (124)
94 cd08677 C2A_Synaptotagmin-13 C 92.6 0.89 1.9E-05 42.2 9.3 97 334-442 15-118 (118)
95 cd04048 C2A_Copine C2 domain f 91.2 3.8 8.1E-05 36.8 11.6 104 339-447 6-117 (120)
96 cd08692 C2B_Tac2-N C2 domain s 91.1 1.3 2.9E-05 42.0 8.8 101 335-445 16-124 (135)
97 cd04018 C2C_Ferlin C2 domain t 89.0 3.5 7.6E-05 39.6 9.9 88 335-430 2-107 (151)
98 PLN02352 phospholipase D epsil 86.4 1.8 4E-05 51.4 7.5 104 354-475 37-142 (758)
99 PLN03200 cellulose synthase-in 86.4 3.5 7.7E-05 53.9 10.5 110 335-458 1982-2097(2102)
100 cd08686 C2_ABR C2 domain in th 83.5 9.1 0.0002 35.7 9.3 84 336-424 2-90 (118)
101 COG4278 Uncharacterized conser 81.2 3.3 7.1E-05 42.9 5.9 193 51-255 59-265 (269)
102 KOG1028 Ca2+-dependent phospho 79.2 8.3 0.00018 43.0 8.8 103 335-444 300-420 (421)
103 KOG1028 Ca2+-dependent phospho 79.1 87 0.0019 35.1 16.7 121 333-464 167-295 (421)
104 PF10358 NT-C2: N-terminal C2 37.6 3.2E+02 0.007 24.9 13.0 116 333-463 7-135 (143)
105 KOG2059 Ras GTPase-activating 27.0 62 0.0014 38.6 3.7 120 334-468 6-130 (800)
106 cd08374 C2F_Ferlin C2 domain s 26.4 4.8E+02 0.01 24.7 9.0 29 334-362 1-34 (133)
107 KOG0696 Serine/threonine prote 24.1 1.3E+02 0.0027 34.5 5.2 99 335-443 182-287 (683)
No 1
>PF07173 DUF1399: Protein of unknown function (DUF1399); InterPro: IPR009836 This family represents a conserved region approximately 150 residues long within a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=2.3e-35 Score=274.89 Aligned_cols=135 Identities=45% Similarity=0.845 Sum_probs=123.6
Q ss_pred hHHHHHHHHhCccCCCCCcccccccc-chhhhHHHhhhhCCCCCccccccccccccccccccccccchhchHHHHHHhhh
Q 007279 99 QYKSDCEELYGKNLDNSYVVSSIQGT-CRKETEEIWNRLYPEEPYELDLAKISSEDFSAELSGLEKFTKYDLVSAVKRQS 177 (609)
Q Consensus 99 ~Y~~dC~~~~gr~id~~~v~~~~~~~-~~~~s~~~W~~~yP~epfd~d~~~~~~~~i~~~~~~~~~~~s~DLv~AV~RQ~ 177 (609)
+|++||+++|||+|+++.+.+..++. +..+++++|+..||.|||++++..... .+...++++||++||+||+
T Consensus 1 ~Y~~~C~~~~grii~~~~~~~~~~~~~a~~~~~~~w~~~~p~e~~~~~~~~~~~-------~~~~~~~~~DLv~av~Rq~ 73 (136)
T PF07173_consen 1 SYRKDCERRFGRIIDHPSISDSINEVYAKNRCRKIWQARYPREPFDLNLISMTV-------WSNGIPISYDLVAAVKRQS 73 (136)
T ss_pred ChHHHHHHHhchhcCCCchhHHHHHHHHHhhhHHHHHHhCCCchHhhhhhhccc-------ccccccchHHHHHHHHHHH
Confidence 59999999999999999999999888 899999999999999999987776554 1225678999999999999
Q ss_pred hHHHHhccCCCCcHHHHHHHHHHHHHhHHhhhhccccccccccCCchhHHHHHhhccCChhhHHHH
Q 007279 178 PFFYQVSRSHFNNDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKD 243 (609)
Q Consensus 178 ~F~~q~~~P~~~d~~~L~rAi~RYkrFL~L~~~~p~~~~~~~LVPTlDIDLvWHTHQL~p~~Y~~D 243 (609)
+|+++|++|++.+..||.+|+.||++||.|++.++++ .+||||+|||||||||||+|..|++|
T Consensus 74 ~F~~~~~~p~~~~~~~l~~A~~RY~~Fl~l~~~~~~~---~~lVPtlDIdLvWHTHqL~p~~Y~~D 136 (136)
T PF07173_consen 74 SFVYKMSSPHLSETVFLERAIRRYKRFLDLLKKYPDK---SFLVPTLDIDLVWHTHQLNPVSYRED 136 (136)
T ss_pred HHHHHHccHhhcCcHHHHHHHHHHHHHHHHHHhCCCC---CCCCChHHHHHHHHHhccCchhccCC
Confidence 9999999999999999999999999999999999864 57999999999999999999999876
No 2
>PF07173 DUF1399: Protein of unknown function (DUF1399); InterPro: IPR009836 This family represents a conserved region approximately 150 residues long within a number of hypothetical plant proteins of unknown function.
Probab=99.85 E-value=5.1e-22 Score=185.48 Aligned_cols=81 Identities=44% Similarity=0.684 Sum_probs=75.2
Q ss_pred hccceechhhHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhHHHHhhccCCCCCCccccCCcchhHHHHHhcc
Q 007279 16 AQEIEISVDDLVAAAKQQLQFLAAVDRNRWLYEGPALQRAIYRYNACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRL 95 (609)
Q Consensus 16 a~~i~~s~D~Lv~aa~rq~~Fl~k~d~~~wL~s~~~l~rAi~RY~~~wl~Lla~~~~~~~~~~~lvPPLDV~~vWH~H~L 95 (609)
+.+++|++| ||+||+||..|+.+|+ .++++++.+|.+|+.||++ |+.|++++++. .++||||||+||||||||
T Consensus 56 ~~~~~~~~D-Lv~av~Rq~~F~~~~~-~p~~~~~~~l~~A~~RY~~-Fl~l~~~~~~~----~~lVPtlDIdLvWHTHqL 128 (136)
T PF07173_consen 56 SNGIPISYD-LVAAVKRQSSFVYKMS-SPHLSETVFLERAIRRYKR-FLDLLKKYPDK----SFLVPTLDIDLVWHTHQL 128 (136)
T ss_pred cccccchHH-HHHHHHHHHHHHHHHc-cHhhcCcHHHHHHHHHHHH-HHHHHHhCCCC----CCCCChHHHHHHHHHhcc
Confidence 568999999 9999999999999999 7889999999999999999 89999998752 589999999999999999
Q ss_pred ChhhHHHH
Q 007279 96 NPVQYKSD 103 (609)
Q Consensus 96 nP~~Y~~d 103 (609)
+|..|.+|
T Consensus 129 ~p~~Y~~D 136 (136)
T PF07173_consen 129 NPVSYRED 136 (136)
T ss_pred CchhccCC
Confidence 99999875
No 3
>COG4278 Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.8e-08 Score=101.24 Aligned_cols=91 Identities=24% Similarity=0.296 Sum_probs=79.5
Q ss_pred cHHHHHHHHHHHHHhHHhhhhccccccccccCCchhHHHHHhhccCChhhHHHHHHhHhCccccCCCcccccccccchhh
Q 007279 190 NDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDMSKTLGKVLEHDDMDQDRTKGKKLDT 269 (609)
Q Consensus 190 d~~~L~rAi~RYkrFL~L~~~~p~~~~~~~LVPTlDIDLvWHTHQL~p~~Y~~Dc~~i~Gr~IdHdD~~~~r~e~~kL~~ 269 (609)
+....++.++.|++|+.|..+.+. .+..|+-.||++||-|+|+++.|.++|.+.+|+.++|++....+.+.++-+.
T Consensus 56 s~e~a~qve~e~R~F~~L~iaagk----~v~tpS~~VD~~WH~lIlhTReye~fcs~vlg~plhh~p~l~~~~~nq~~~~ 131 (269)
T COG4278 56 SRELAEQVEKELRRFVLLTIAAGK----RVFTPSGVVDLYWHELILHTREYEKFCSSVLGIPLHHNPLLAKLLNNQDNSF 131 (269)
T ss_pred cHHHHHHHHHHHHHHhhhhhhcCc----cccChhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccChhhhcccCCCchhH
Confidence 345678899999999999887763 4678999999999999999999999999999999999999887667777888
Q ss_pred hHHHHHHHHHHHhCC
Q 007279 270 GFSGTTKQWEETFGS 284 (609)
Q Consensus 270 af~~T~~Lye~~FGe 284 (609)
++.+|.+.+...+|.
T Consensus 132 ~lr~tlk~~~r~e~I 146 (269)
T COG4278 132 GLRRTLKPACRNEGI 146 (269)
T ss_pred HHHHhcchhhhcccc
Confidence 999999988877773
No 4
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=98.12 E-value=3.9e-05 Score=73.13 Aligned_cols=124 Identities=16% Similarity=0.245 Sum_probs=89.2
Q ss_pred ceEEEEEEEEEeecCCCCCcCCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEee-ccccEEEEEEecCCC
Q 007279 330 LKIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTS 406 (609)
Q Consensus 330 ~~~~ev~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE-~t~~lvlElr~~~~~ 406 (609)
|..--+.|.|++|||+|... +.|+.+..-+ ..+ .++..+ +.++.|.+-|+|.|- +...+.|.|..+...
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~--~~v--aRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~ 79 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK----RYYCELCLDK--TLY--ARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDK 79 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC----CceEEEEECC--EEE--EEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCc
Confidence 44555788999999998643 6899987543 111 122222 346799999999999 567899999655442
Q ss_pred CccCCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCCC-------CCCCceEEEEEeecCC
Q 007279 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNV-------SSKPISLRIAVSFTIP 465 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~-------~~~p~~lrva~S~TpP 465 (609)
. +...+..+||++.|+..++.. .-.+|+||+|.+.++.. .....+|||-+.+++=
T Consensus 80 ~-~~~~~~~~IG~V~Ip~~~l~~---~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 80 K-KKKDKSQLIGTVNIPVTDVSS---RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred c-ccccCCcEEEEEEEEHHHhcC---CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 2 123478999999999999984 57899999998876553 1334799999988763
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=97.94 E-value=0.00017 Score=65.01 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=84.6
Q ss_pred EEEEEEEeecCCCCCc-CCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEee-ccccEEEEEEecCCCCcc
Q 007279 334 EVFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIP 409 (609)
Q Consensus 334 ev~l~iv~~kNl~~~~-~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE-~t~~lvlElr~~~~~~l~ 409 (609)
|+.|.|++++|++... ....+-||+++... .... ++-.+ +.++.|++.+.|.+. +...+.||+.-+..
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~---kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~---- 72 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVY---KSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDR---- 72 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC-EEEE---EeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCC----
Confidence 4778899999998542 22367799887532 1111 11112 456799999999987 57789999987654
Q ss_pred CCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCCCCCCCceEEEEEeecC
Q 007279 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI 464 (609)
Q Consensus 410 ~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S~Tp 464 (609)
+++...||.+.|+++++... -..|.|++|...++ ....=.|++.+++||
T Consensus 73 -~~~~~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~--~~~~G~l~l~~~~~~ 121 (121)
T cd04042 73 -GLTDDFMGSAFVDLSTLELN---KPTEVKLKLEDPNS--DEDLGYISLVVTLTP 121 (121)
T ss_pred -CCCCcceEEEEEEHHHcCCC---CCeEEEEECCCCCC--ccCceEEEEEEEECC
Confidence 45678999999999999853 45899999987655 234558888888887
No 6
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=97.84 E-value=0.00032 Score=63.77 Aligned_cols=121 Identities=20% Similarity=0.258 Sum_probs=89.0
Q ss_pred EEEEEeecCCCCCcCCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEeec-cccEEEEEEecCCCCccCC
Q 007279 336 FVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA-TGELLFELVSHSTSKIPMT 411 (609)
Q Consensus 336 ~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE~-t~~lvlElr~~~~~~l~~~ 411 (609)
.|.+++++||+. .....+-||.++........ +..+ +.++.|++.+.|...+ ...|.|++.-+.. .
T Consensus 2 ~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~----kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~-----~ 71 (126)
T cd08678 2 LVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKY----QSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGK-----K 71 (126)
T ss_pred EEEEEEecCCCC-CCCCcCCEEEEEECCCCcEE----EeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCC-----C
Confidence 578899999987 33346789988864322111 2222 3467999999999874 6789999886655 3
Q ss_pred CCcccceeEEeecccccCCCCcceEEEEEeeccCCCCCCCCCceEEEEEeecCCCccc
Q 007279 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAP 469 (609)
Q Consensus 412 ~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S~TpPvqAp 469 (609)
++.+.||.+.|+.+++... -..+.|++|.++++......=+|++.+.+++|-.+|
T Consensus 72 ~~~~~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~~~ 126 (126)
T cd08678 72 SDSKFLGLAIVPFDELRKN---PSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAELP 126 (126)
T ss_pred CCCceEEEEEEeHHHhccC---CceeEEEEecCCCCCCCCcceEEEEEEEEeccccCC
Confidence 5789999999999999964 334789999987654334456999999999998665
No 7
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=97.82 E-value=0.00036 Score=63.85 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=83.2
Q ss_pred EEEEEEEEeecCCCCCcCCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEeecc--ccEEEEEEecCCCCccC
Q 007279 333 VEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEAT--GELLFELVSHSTSKIPM 410 (609)
Q Consensus 333 ~ev~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE~t--~~lvlElr~~~~~~l~~ 410 (609)
-.+.|.|++++|||.... .+-||.++...- ... +.++.=..++.|++.+.|.+.+. ..+.+++.....
T Consensus 4 ~~L~V~Vi~A~~L~~~~~--~DPYv~v~l~~~-~~~--kT~v~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~----- 73 (126)
T cd08400 4 RSLQLNVLEAHKLPVKHV--PHPYCVISLNEV-KVA--RTKVREGPNPVWSEEFVFDDLPPDVNSFTISLSNKAK----- 73 (126)
T ss_pred eEEEEEEEEeeCCCCCCC--CCeeEEEEECCE-eEE--EeecCCCCCCccCCEEEEecCCCCcCEEEEEEEECCC-----
Confidence 347888999999987543 678998875321 111 11111245789999999987643 467777655433
Q ss_pred CCCcccceeEEeecccccCCCCcceEEEEEeeccCCCCCCCCCceEEEEEeecC
Q 007279 411 TGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI 464 (609)
Q Consensus 411 ~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S~Tp 464 (609)
+.+...||.++|+..++... -.+|.|++|.+.+.....+.=.||+.+++++
T Consensus 74 ~~~d~~iG~v~i~l~~l~~~---~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 74 RSKDSEIAEVTVQLSKLQNG---QETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCCCeEEEEEEEHhHccCC---CcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 56788999999999998853 4579999999876533444568999988765
No 8
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=97.52 E-value=0.001 Score=60.48 Aligned_cols=104 Identities=17% Similarity=0.306 Sum_probs=73.1
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEeec-------cccEEEEEEecCCC
Q 007279 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA-------TGELLFELVSHSTS 406 (609)
Q Consensus 335 v~l~iv~~kNl~~~~-~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE~-------t~~lvlElr~~~~~ 406 (609)
|.|.|++++||+... ....+-||.++.. ..+ .. .+...=+.++-|++.+.|.+-. ...|.|++..+..
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-~~~-~k-T~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-KEK-YS-TSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC-Cee-ee-eeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-
Confidence 467889999998552 2336889999853 221 11 1111224678999998888743 4578888877653
Q ss_pred CccCCCCcccceeEEeecccccCCCCcceEEEEEeeccCCC
Q 007279 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~ 447 (609)
+++...||.+.|+..++... +.-..+.|++|.++.+
T Consensus 77 ----~~~d~~iG~~~i~l~~l~~~-~~~~~~~W~~L~~~~~ 112 (126)
T cd08682 77 ----LGLDKFLGQVSIPLNDLDED-KGRRRTRWFKLESKPG 112 (126)
T ss_pred ----cCCCceeEEEEEEHHHhhcc-CCCcccEEEECcCCCC
Confidence 45678999999999999853 3567899999987655
No 9
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=97.47 E-value=0.0016 Score=60.01 Aligned_cols=114 Identities=8% Similarity=0.175 Sum_probs=78.2
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEee-ccccEEEEEEecCCCCccCC
Q 007279 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMT 411 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE-~t~~lvlElr~~~~~~l~~~ 411 (609)
+.|.++++|+++...-...+-||+++..+ ..+ +.++.. ..++-|++.+.|.|. +...|.||+..+.. +
T Consensus 4 L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~--~~~--kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~-----~ 74 (121)
T cd04016 4 LSITVVQAKLVKNYGLTRMDPYCRIRVGH--AVY--ETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERA-----F 74 (121)
T ss_pred EEEEEEEccCCCcCCCCCCCceEEEEECC--EEE--EeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCC-----C
Confidence 56677899987643112368899988632 222 112222 357899999999998 45689999988776 5
Q ss_pred CCcccceeEEeecccccCCCCcceEEEEEeeccCCCCCCCCCceEEEEEe
Q 007279 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVS 461 (609)
Q Consensus 412 ~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S 461 (609)
.+..+||.++|+..+.+.+. =.++.|++|.++++. .+.-++++.+|
T Consensus 75 ~~dd~iG~~~i~l~~~~~~g--~~~~~W~~L~~~~~~--~~~g~i~l~l~ 120 (121)
T cd04016 75 TMDERIAWTHITIPESVFNG--ETLDDWYSLSGKQGE--DKEGMINLVFS 120 (121)
T ss_pred cCCceEEEEEEECchhccCC--CCccccEeCcCccCC--CCceEEEEEEe
Confidence 66789999999997533332 347999999886653 34456666665
No 10
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=97.46 E-value=0.002 Score=61.65 Aligned_cols=98 Identities=14% Similarity=0.316 Sum_probs=69.2
Q ss_pred CceEEEEeccCCCccccccceeee--eeccccceeEEEEee-ccccEEEEEEecCCCCccCCCCcccceeEEeecccccC
Q 007279 353 GDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFIS 429 (609)
Q Consensus 353 ~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE-~t~~lvlElr~~~~~~l~~~~~sk~lG~~sisw~dll~ 429 (609)
.+-||.++.. +.+. .++-.+ +.++.|++.+.|+|. ....+.|++..+.. + +..+||++.|++.++..
T Consensus 58 sDPYv~V~l~-~~~~---~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~-----~-~~~~IG~~~i~l~~l~~ 127 (158)
T cd04015 58 SDPYATVDLA-GARV---ARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDV-----V-GAQLIGRAYIPVEDLLS 127 (158)
T ss_pred cCeEEEEEEC-CeEe---eEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCC-----c-CCcEEEEEEEEhHHccC
Confidence 4678877743 2221 112222 356799999999997 45688888876543 2 34799999999999985
Q ss_pred CCCcceEEEEEeeccCCCCCCCCCceEEEEEeec
Q 007279 430 PISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFT 463 (609)
Q Consensus 430 ~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S~T 463 (609)
.-..+.|++|....+..-..+..|||.+++|
T Consensus 128 ---g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 128 ---GEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ---CCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 3468999999877554445567999998875
No 11
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=97.30 E-value=0.0043 Score=55.92 Aligned_cols=105 Identities=21% Similarity=0.175 Sum_probs=69.9
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCcccccccee-eeeeccccceeEEEEeec--cccEEEEEEecCCCCccC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKL-TILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPM 410 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~-~iss~s~~k~~~~lqCE~--t~~lvlElr~~~~~~l~~ 410 (609)
+.|.|++++||+.. .....+-||.++........ .+.++ .=+.++.|++.+.|.... ...|.|++..+..
T Consensus 3 ~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~-~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~----- 76 (126)
T cd04043 3 FTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRI-AKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSF----- 76 (126)
T ss_pred EEEEEEEeECCCCCCCCCCCCceEEEEECCCCeee-ecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCC-----
Confidence 35668999999854 22235679998744221111 11111 114567899999999874 5678889876653
Q ss_pred CCCcccceeEEeecccccCCCCcceEEEEEeeccC
Q 007279 411 TGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (609)
Q Consensus 411 ~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~ 445 (609)
+.+..+||.+.+++.++......-..+.|++|.+.
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~~ 111 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQ 111 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCCCceEEEEcCCC
Confidence 35678899999999887653214567899999874
No 12
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.28 E-value=0.0023 Score=56.46 Aligned_cols=99 Identities=20% Similarity=0.280 Sum_probs=71.5
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEeec--cccEEEEEEecCCCCccCC
Q 007279 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMT 411 (609)
Q Consensus 335 v~l~iv~~kNl~~~~-~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE~--t~~lvlElr~~~~~~l~~~ 411 (609)
+.|.|++++|||... ....+-||.++... ...+. +...=+.++.|++.+.|.|.. ...|.|++..+..
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT-~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~------ 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK--TTQKS-KVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT------ 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC--EEEeC-ccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC------
Confidence 567889999998542 22367789887542 21111 111114577999999999993 5678888887653
Q ss_pred CCcccceeEEeecccccCCCCcceEEEEEeeccC
Q 007279 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (609)
Q Consensus 412 ~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~ 445 (609)
.+.||++.|++.++... +...++.||+|..+
T Consensus 73 --~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 --GKSLGSLTLPLSELLKE-PDLTLDQPFPLDNS 103 (105)
T ss_pred --CCccEEEEEEHHHhhcc-ccceeeeeEecCCC
Confidence 56799999999999975 56789999999754
No 13
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=97.26 E-value=0.0037 Score=59.42 Aligned_cols=121 Identities=12% Similarity=0.240 Sum_probs=81.3
Q ss_pred EEEEEEeecCCCCCcC-CCCceEEEEeccCCCccccccceeee--eeccccceeEEEEee-c-cccEEEEEEecCCCCcc
Q 007279 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIP 409 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~-~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE-~-t~~lvlElr~~~~~~l~ 409 (609)
+.|.|++++||+.... ...+-||.++... ... +.+... +.++.|++.+.|.+. + ...+.|++.-+..
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~--~~~--kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~---- 73 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGN--QVL--RTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG---- 73 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECC--EEe--eeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC----
Confidence 4678899999975532 2467799988542 211 112222 247899999999984 3 4588899986554
Q ss_pred CCCCcccceeEEeecccccCC-CCcceEEEEEeeccCCCC----CCCC-CceEEEEEeecC
Q 007279 410 MTGASKTMGTASLSLQNFISP-ISKLAVEQWFDLVPRSGN----VSSK-PISLRIAVSFTI 464 (609)
Q Consensus 410 ~~~~sk~lG~~sisw~dll~~-~~~Ls~E~w~~L~~~~~~----~~~~-p~~lrva~S~Tp 464 (609)
.++..+||++.|+++++... .+.-.+++|++|...++. ...+ .-.|+|-+++++
T Consensus 74 -~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 74 -PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred -CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 34568999999999998753 123458999999887652 1122 256777777663
No 14
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=97.11 E-value=0.0025 Score=59.36 Aligned_cols=100 Identities=16% Similarity=0.265 Sum_probs=71.9
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCccccccceee---eeeccccceeEEEEeec----cccEEEEEEecCCCC
Q 007279 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLT---ILSKSGMKQVASFQCEA----TGELLFELVSHSTSK 407 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~---iss~s~~k~~~~lqCE~----t~~lvlElr~~~~~~ 407 (609)
+.|.|++++||+.......+.||+.+..-.++... +++.. =+.++.|++.+.|.... +..|.|+|..+..
T Consensus 17 L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~-~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~-- 93 (137)
T cd08409 17 LTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVK-TKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG-- 93 (137)
T ss_pred EEEEEEEecCCCcccCCCCCeEEEEEEEECCEEee-eeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC--
Confidence 67778999999754333478999999663333322 11222 25677999999998852 3689999988876
Q ss_pred ccCCCCcccceeEEee------------cccccCCCCcceEEEEEe
Q 007279 408 IPMTGASKTMGTASLS------------LQNFISPISKLAVEQWFD 441 (609)
Q Consensus 408 l~~~~~sk~lG~~sis------------w~dll~~~~~Ls~E~w~~ 441 (609)
.++..+||.+.|+ |+++++. |.-.+++|=.
T Consensus 94 ---~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~-p~~~i~~WH~ 135 (137)
T cd08409 94 ---VRKSKLLGRVVLGPFMYARGKELEHWNDMLSK-PKELIKRWHA 135 (137)
T ss_pred ---CCCcceEEEEEECCcccCCChHHHHHHHHHhC-CCCceeEEEe
Confidence 5678899999997 8888875 5778888854
No 15
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=97.02 E-value=0.014 Score=51.86 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=70.5
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEee-c-cccEEEEEEecCCCCccCC
Q 007279 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIPMT 411 (609)
Q Consensus 335 v~l~iv~~kNl~~~~-~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE-~-t~~lvlElr~~~~~~l~~~ 411 (609)
|.|.|++++||+... ....+-||.++... ..... +...=+.++.|++.+.|... + ...+.+++..+.. +
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~kT-~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~-----~ 73 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGN--EKYKS-KVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDT-----G 73 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECC--EeEec-ccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCC-----C
Confidence 456689999998652 22357799888532 11110 11112567799999988876 3 5678888766543 4
Q ss_pred CCcccceeEEeecccccCCCCcceEEEEEeeccCCC
Q 007279 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (609)
Q Consensus 412 ~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~ 447 (609)
.+...||.+.+++.++... -..+.|++|.+..|
T Consensus 74 ~~~~~iG~~~~~l~~l~~~---~~~~~w~~L~~~~G 106 (116)
T cd08376 74 KKDEFIGRCEIDLSALPRE---QTHSLELELEDGEG 106 (116)
T ss_pred CCCCeEEEEEEeHHHCCCC---CceEEEEEccCCCc
Confidence 6778999999999998863 46899999998744
No 16
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=97.00 E-value=0.011 Score=54.93 Aligned_cols=118 Identities=11% Similarity=0.093 Sum_probs=78.5
Q ss_pred EEEEEEeecC---CCCC-cCCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEee-ccccEEEEEEecCCCC-c
Q 007279 335 VFVEIVAVKN---LPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSK-I 408 (609)
Q Consensus 335 v~l~iv~~kN---l~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE-~t~~lvlElr~~~~~~-l 408 (609)
+.|.+++++| ++.. .....+-||.++- ++.... .+.+.=+.++.|++.+.|+|. +...|.|++..+.... =
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~--g~~~~r-Tk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKY--GPKWVR-TRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWK 78 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEE--CCEEeE-cCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccc
Confidence 4566799999 5533 1223578999884 222221 111222567899999999997 5668999997765421 0
Q ss_pred cCCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCCCCCCCceEEE
Q 007279 409 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRI 458 (609)
Q Consensus 409 ~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~~lrv 458 (609)
...++..+||++.|+.+++... -.++.|++|...++....+.-+||.
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDD---RVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCC---CEEeeEEEeEeCCCCCccCCcEEEe
Confidence 1235789999999999998753 4689999998766443444556654
No 17
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=96.97 E-value=0.0067 Score=54.65 Aligned_cols=98 Identities=16% Similarity=0.204 Sum_probs=69.5
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEeec----cccEEEEEEecCCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHSTS 406 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE~----t~~lvlElr~~~~~ 406 (609)
+.|.|++++||+.. .....+-||.++....+.. ..+..+ +.++.|++.+.|.+.. +..|.|++..+..
T Consensus 18 L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~---~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~- 93 (124)
T cd08385 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR- 93 (124)
T ss_pred EEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCC---ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC-
Confidence 78889999999854 2233678999986522211 112222 4577999999999863 4578888886643
Q ss_pred CccCCCCcccceeEEeecccccCCCCcceEEEEEeec
Q 007279 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~ 443 (609)
+++...||.+.|++.++... -..+.|++|.
T Consensus 94 ----~~~~~~lG~~~i~l~~~~~~---~~~~~W~~l~ 123 (124)
T cd08385 94 ----FSKHDLIGEVRVPLLTVDLG---HVTEEWRDLE 123 (124)
T ss_pred ----CCCCceeEEEEEecCcccCC---CCcceEEEcc
Confidence 56778999999999998652 3578999974
No 18
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.95 E-value=0.016 Score=52.78 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=80.9
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCC--Cccccccceeee--eeccccceeEEEEeec-cccEEEEEEecCCCCc
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQP--DIFFNAKQKLTI--LSKSGMKQVASFQCEA-TGELLFELVSHSTSKI 408 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~--d~~~~~~~~~~i--ss~s~~k~~~~lqCE~-t~~lvlElr~~~~~~l 408 (609)
+.|.|++++||+.. .....+-||.++.... ...+.-.++-.+ +.++.|++.+.|+..+ ...+.|++..+..
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~--- 78 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENR--- 78 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCC---
Confidence 45678999999854 2223677998885422 111111111112 4567999999999874 5678889886654
Q ss_pred cCCCCcccceeEEeecccccCCCCc---ceEEEEEeeccCCCCCCCCCceEEEEEee
Q 007279 409 PMTGASKTMGTASLSLQNFISPISK---LAVEQWFDLVPRSGNVSSKPISLRIAVSF 462 (609)
Q Consensus 409 ~~~~~sk~lG~~sisw~dll~~~~~---Ls~E~w~~L~~~~~~~~~~p~~lrva~S~ 462 (609)
+.+...||.+.|+..++....+. -..++|+.|.+.++ .+...=.|++.+++
T Consensus 79 --~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 --LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSS-KSRVKGHLRLYMAY 132 (133)
T ss_pred --CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCC-CCcceeEEEEEEee
Confidence 46678999999999999976432 25889999986533 23334477777764
No 19
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.90 E-value=0.017 Score=52.50 Aligned_cols=115 Identities=21% Similarity=0.245 Sum_probs=79.5
Q ss_pred EEeecCCCCCcCCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEee----ccccEEEEEEecCCCCccCCCCc
Q 007279 339 IVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE----ATGELLFELVSHSTSKIPMTGAS 414 (609)
Q Consensus 339 iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE----~t~~lvlElr~~~~~~l~~~~~s 414 (609)
++.++||+. .....+-||+++... .+ .+ .+...=+.++.|++.+.|.+. ....+.|++..+.. +.+.
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~-~~-~k-T~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-----~~~d 72 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRG-VK-KK-TRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-----VGRN 72 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECC-Ee-ee-cceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-----CCCC
Confidence 678999987 333367789888531 11 11 011112357799999999995 35678888887654 3566
Q ss_pred ccceeEEeecccccCCCCcceEEEEEeeccCCCCCCCCCceEEEEEeecCCCc
Q 007279 415 KTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTL 467 (609)
Q Consensus 415 k~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S~TpPvq 467 (609)
.+||.+.++.+++... -....|++|.+.++. ...-.|++.+++.||--
T Consensus 73 ~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~~--~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 73 RLIGSATVSLQDLVSE---GLLEVTEPLLDSNGR--PTGATISLEVSYQPPDG 120 (127)
T ss_pred ceEEEEEEEhhHcccC---CceEEEEeCcCCCCC--cccEEEEEEEEEeCCCC
Confidence 8999999999999963 458889999766542 22358899999888753
No 20
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.90 E-value=0.009 Score=53.57 Aligned_cols=100 Identities=11% Similarity=0.195 Sum_probs=67.4
Q ss_pred EEEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccce--eeeeeccccceeEEEEeec-----cccEEEEEEecCC
Q 007279 334 EVFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQK--LTILSKSGMKQVASFQCEA-----TGELLFELVSHST 405 (609)
Q Consensus 334 ev~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~--~~iss~s~~k~~~~lqCE~-----t~~lvlElr~~~~ 405 (609)
++.|.|++++|++.. .....+-||+++....+......++ ..=+.++.|++.+.|.+-. +..|.|++..+..
T Consensus 17 ~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~ 96 (125)
T cd04031 17 QLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR 96 (125)
T ss_pred EEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 378889999999754 2234678999987542221111111 1125677999999999642 4578888877654
Q ss_pred CCccCCCCcccceeEEeecccccCCCCcceEEEEEee
Q 007279 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (609)
Q Consensus 406 ~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L 442 (609)
+++..+||.++|+.++.... . .+.|++|
T Consensus 97 -----~~~~~~iG~~~i~l~~~~~~--~--~~~W~~L 124 (125)
T cd04031 97 -----DGENDFLGEVVIDLADALLD--D--EPHWYPL 124 (125)
T ss_pred -----CCCCcEeeEEEEeccccccc--C--CcceEEC
Confidence 46788999999999994332 2 3689986
No 21
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=96.90 E-value=0.011 Score=52.75 Aligned_cols=99 Identities=15% Similarity=0.276 Sum_probs=69.2
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEeec--cccEEEEEEecCCCCcc
Q 007279 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA--TGELLFELVSHSTSKIP 409 (609)
Q Consensus 335 v~l~iv~~kNl~~~~-~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE~--t~~lvlElr~~~~~~l~ 409 (609)
+.|.|++++||+... ....+-||.++... .+ . +.+... +.++-|++.+.|.+-. ...+.||+..+..
T Consensus 3 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~-~--kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~---- 74 (118)
T cd08681 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGG-VT-K--KTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK---- 74 (118)
T ss_pred EEEEEEEccCCCCCCcCCCCCceEEEEECC-Cc-c--ccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC----
Confidence 677889999998542 22357799988542 11 1 111111 2478999999999874 4578899887544
Q ss_pred CCCCcccceeEEeecccccCCCCcceEEEEEeeccCC
Q 007279 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (609)
Q Consensus 410 ~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~ 446 (609)
.+ ..+||.+.|++.+++... ..+.|++|..++
T Consensus 75 -~~-~~~iG~~~~~l~~~~~~~---~~~~w~~L~~~~ 106 (118)
T cd08681 75 -RK-PDLIGDTEVDLSPALKEG---EFDDWYELTLKG 106 (118)
T ss_pred -CC-CcceEEEEEecHHHhhcC---CCCCcEEeccCC
Confidence 23 789999999999998642 468999998643
No 22
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=96.89 E-value=0.013 Score=53.26 Aligned_cols=118 Identities=16% Similarity=0.145 Sum_probs=76.6
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccce-eeeeeccccceeEEEEee-cc----ccEEEEEEecCCCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQK-LTILSKSGMKQVASFQCE-AT----GELLFELVSHSTSK 407 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~-~~iss~s~~k~~~~lqCE-~t----~~lvlElr~~~~~~ 407 (609)
+.|.|++++||+.. .....+-||.++... .+. +.+ ..=+.++.|++.+.|.+. +. ..|.|++.-+.. +
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~---rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~-~ 76 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDG-QKK---RTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR-S 76 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EEe---cceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC-C
Confidence 56789999999754 223467799887432 111 111 111456789999999997 32 357777776433 1
Q ss_pred ccCCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCCCCCCCceEEEEEeec
Q 007279 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFT 463 (609)
Q Consensus 408 l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S~T 463 (609)
.++...||.+.|+.+++..+ .-....|++|..++. .+..-=+|++.+.+|
T Consensus 77 ---~~~d~~lG~v~i~l~~l~~~--~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~~ 126 (127)
T cd04022 77 ---GRRRSFLGRVRISGTSFVPP--SEAVVQRYPLEKRGL-FSRVRGEIGLKVYIT 126 (127)
T ss_pred ---cCCCCeeeEEEEcHHHcCCC--CCccceEeEeeeCCC-CCCccEEEEEEEEEc
Confidence 23678999999999999842 345789999986522 221222677777766
No 23
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=96.89 E-value=0.0061 Score=54.25 Aligned_cols=99 Identities=20% Similarity=0.301 Sum_probs=72.0
Q ss_pred EEEEEeecCCCCCc--CCCCceEEEEeccCCCccccccceeee--eecccc-ceeEEEEeec----cccEEEEEEecCCC
Q 007279 336 FVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGM-KQVASFQCEA----TGELLFELVSHSTS 406 (609)
Q Consensus 336 ~l~iv~~kNl~~~~--~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~-k~~~~lqCE~----t~~lvlElr~~~~~ 406 (609)
.|.|++++|||... ....+-||.++... ... + +-.+ +.++.| ++.+.|.+.. +..|.|++..+..
T Consensus 2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~--~~~--k-T~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~- 75 (110)
T cd08688 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGS--TTY--K-TDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT- 75 (110)
T ss_pred EEEEEEEECCCccccCCCCCCceEEEEECC--eeE--e-cceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC-
Confidence 56789999998542 22357899998643 111 1 1222 456799 8988888863 3678899988764
Q ss_pred CccCCCCcccceeEEeecccccCCCCcceEEEEEeecc
Q 007279 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~ 444 (609)
+++..+||.+.++.+++..+.+.-.+++||+|..
T Consensus 76 ----~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 76 ----YSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ----CCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 4567899999999999998656778999999853
No 24
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=96.88 E-value=0.016 Score=52.65 Aligned_cols=105 Identities=8% Similarity=0.030 Sum_probs=74.5
Q ss_pred EEEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEeeccccEEEEEEecCCCCccC
Q 007279 334 EVFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEATGELLFELVSHSTSKIPM 410 (609)
Q Consensus 334 ev~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE~t~~lvlElr~~~~~~l~~ 410 (609)
|+.|.|++++||+.. .-...+-||+++.. +.... ++..+ +.++.|++.+.|.+.....|.||+..+...
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~-~~~~~---kT~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d~~~~---- 72 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVD-GGQTH---STDVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKF---- 72 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEEC-Cccce---EccEEcCCCCCcccceEEEEeCCCCEEEEEEEECCCC----
Confidence 578999999999754 21235779998853 22111 12223 457799999999998888999999876552
Q ss_pred CC-CcccceeEEeecccccCCCCcceEEEEEeeccCCCC
Q 007279 411 TG-ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (609)
Q Consensus 411 ~~-~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~ 448 (609)
.+ ....||.+.|+.++|+... =+.+.|++|.+.+..
T Consensus 73 ~~~~d~~lG~~~i~l~~l~~~~--~~~~~~~~l~~~~~~ 109 (123)
T cd08382 73 KKKDQGFLGCVRIRANAVLPLK--DTGYQRLDLRKLKKS 109 (123)
T ss_pred CCCCCceEeEEEEEHHHccccC--CCccceeEeecCCCC
Confidence 22 2579999999999999642 345679999766543
No 25
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=96.82 E-value=0.012 Score=54.01 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=70.1
Q ss_pred EEEEEEeecCCCCCc--CCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEeec----cccEEEEEEecCC
Q 007279 335 VFVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHST 405 (609)
Q Consensus 335 v~l~iv~~kNl~~~~--~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE~----t~~lvlElr~~~~ 405 (609)
+.|.|++++||+... ....+-||.++....+.... +++..+ +.++.|++.+.|.... ...|.|++..+..
T Consensus 17 L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~-~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 17 LNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQS-KRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR 95 (125)
T ss_pred EEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCcccc-ceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 667789999997541 23467899998753332211 112233 3567999999998863 3468888886654
Q ss_pred CCccCCCCcccceeEEeecccccCCCCcceEEEEEeec
Q 007279 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (609)
Q Consensus 406 ~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~ 443 (609)
+++...||.+.|+..++--. =.++.|++|.
T Consensus 96 -----~~~~~~lG~~~i~l~~~~~~---~~~~~w~~l~ 125 (125)
T cd04029 96 -----FGRNTFLGEVEIPLDSWNFD---SQHEECLPLH 125 (125)
T ss_pred -----CCCCcEEEEEEEeCCccccc---CCcccEEECc
Confidence 57889999999999998643 3489999874
No 26
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=96.82 E-value=0.0066 Score=55.31 Aligned_cols=101 Identities=16% Similarity=0.274 Sum_probs=67.6
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCc-cccccce-eeeeeccccceeEEEEeec-c--ccEEEEEEecCCCCcc
Q 007279 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDI-FFNAKQK-LTILSKSGMKQVASFQCEA-T--GELLFELVSHSTSKIP 409 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~-~~~~~~~-~~iss~s~~k~~~~lqCE~-t--~~lvlElr~~~~~~l~ 409 (609)
+.|.|++++||+.......+-||+++...... ...-+.+ ..=+.++.|++.+.|.+.. . ..++|++..+...
T Consensus 14 L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~--- 90 (119)
T cd08685 14 LTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK--- 90 (119)
T ss_pred EEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC---
Confidence 77889999999754333358899999653221 1111111 1224577999999999863 2 3477777665442
Q ss_pred CCCCcccceeEEeecccccCCCCcceEEEEEee
Q 007279 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (609)
Q Consensus 410 ~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L 442 (609)
.+.+..||.++|+..++... =.++.|+.|
T Consensus 91 -~~~~~~lG~~~i~l~~~~~~---~~~~~Wy~l 119 (119)
T cd08685 91 -SRDSGLLGCMSFGVKSIVNQ---KEISGWYYL 119 (119)
T ss_pred -cCCCEEEEEEEecHHHhccC---ccccceEeC
Confidence 35678999999999999843 236899864
No 27
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=96.81 E-value=0.012 Score=53.67 Aligned_cols=99 Identities=18% Similarity=0.307 Sum_probs=71.0
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEeec--cccEEEEEEecCCCCccC
Q 007279 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPM 410 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE~--t~~lvlElr~~~~~~l~~ 410 (609)
+.|.|++++||+.. . .+-||.++... . . .++-.+ +.++.|++.+.|++.. ...|.|++..+..
T Consensus 2 L~V~Vi~a~~L~~~-~--~Dpyv~v~l~~-~-~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~----- 68 (121)
T cd08378 2 LYVRVVKARGLPAN-S--NDPVVEVKLGN-Y-K---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK----- 68 (121)
T ss_pred EEEEEEEecCCCcc-c--CCCEEEEEECC-c-c---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCC-----
Confidence 46778999999877 4 68899998642 1 1 111122 4567999999999973 4568888876543
Q ss_pred CCCcccceeEEeecccccCCC--CcceEEEEEeeccCCC
Q 007279 411 TGASKTMGTASLSLQNFISPI--SKLAVEQWFDLVPRSG 447 (609)
Q Consensus 411 ~~~sk~lG~~sisw~dll~~~--~~Ls~E~w~~L~~~~~ 447 (609)
+ +..+||.+.|+++++.... ..-...+|++|.+.++
T Consensus 69 ~-~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~ 106 (121)
T cd08378 69 A-KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG 106 (121)
T ss_pred C-cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC
Confidence 2 6788999999999987532 1334789999988765
No 28
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=96.72 E-value=0.038 Score=49.58 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=68.9
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEeecc--ccEEEEEEecCCCCcc
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEAT--GELLFELVSHSTSKIP 409 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE~t--~~lvlElr~~~~~~l~ 409 (609)
+.|.|++++|++.. .....+-||.++........ .++-.+ +.++.|++.+.|..... .-+.|++..+..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~--~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~---- 75 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEK--KRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDY---- 75 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCcc--CccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCC----
Confidence 45678999999854 22336789999854211111 111122 45679999999988743 346777777543
Q ss_pred CCCCcccceeEEeecccccCCCCcceEEEEEeeccC
Q 007279 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (609)
Q Consensus 410 ~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~ 445 (609)
+ +...||++.|++.++.. .-..+.|++|.++
T Consensus 76 -~-~~~~iG~~~~~l~~l~~---g~~~~~~~~L~~~ 106 (119)
T cd04036 76 -V-MDDHLGTVLFDVSKLKL---GEKVRVTFSLNPQ 106 (119)
T ss_pred -C-CCcccEEEEEEHHHCCC---CCcEEEEEECCCC
Confidence 4 66799999999999874 4689999999876
No 29
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=96.71 E-value=0.015 Score=52.42 Aligned_cols=101 Identities=11% Similarity=0.137 Sum_probs=68.7
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEeec----cccEEEEEEecCCCCcc
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA----TGELLFELVSHSTSKIP 409 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE~----t~~lvlElr~~~~~~l~ 409 (609)
+.|.|++++||+.. .....+-||+++....+....-.+...=+.++.|++.+.|.+.. ...|.|++..+..
T Consensus 18 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~---- 93 (124)
T cd08387 18 LNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ---- 93 (124)
T ss_pred EEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC----
Confidence 67888999999854 22236789999974222211100111124567899998888752 3478888876643
Q ss_pred CCCCcccceeEEeecccccCCCCcceEEEEEeec
Q 007279 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (609)
Q Consensus 410 ~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~ 443 (609)
+++...||.+.|+.+++... . .+..|+.|.
T Consensus 94 -~~~~~~iG~~~i~l~~~~~~-~--~~~~W~~l~ 123 (124)
T cd08387 94 -FSRDECIGVVELPLAEVDLS-E--KLDLWRKIQ 123 (124)
T ss_pred -CCCCceeEEEEEecccccCC-C--CcceEEECc
Confidence 56778999999999999864 2 678899874
No 30
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=96.68 E-value=0.003 Score=57.08 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=71.1
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccce--eeeeeccccceeEEEEeec----cccEEEEEEecCCCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQK--LTILSKSGMKQVASFQCEA----TGELLFELVSHSTSK 407 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~--~~iss~s~~k~~~~lqCE~----t~~lvlElr~~~~~~ 407 (609)
+.|.|++++||+.. .....+.||+++....+......++ ..-+.++.|++.+.|.+.. ...|.|+|..+..
T Consensus 16 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~-- 93 (134)
T cd00276 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS-- 93 (134)
T ss_pred EEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC--
Confidence 67778999999864 2334789999997644321111111 2224567999999999874 3578888876654
Q ss_pred ccCCCCcccceeEEeecccccCCCCcceEEEEEeeccCC
Q 007279 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (609)
Q Consensus 408 l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~ 446 (609)
+++..+||.+.|+..+ . .-..+.|++|..+.
T Consensus 94 ---~~~~~~lG~~~i~l~~-~----~~~~~~W~~l~~~~ 124 (134)
T cd00276 94 ---VGRNEVIGQVVLGPDS-G----GEELEHWNEMLASP 124 (134)
T ss_pred ---CCCCceeEEEEECCCC-C----CcHHHHHHHHHhCC
Confidence 3677899999999998 2 34578999987764
No 31
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=96.64 E-value=0.022 Score=50.64 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=68.9
Q ss_pred EEEEEEEeecCCCCCcCCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEee-c-----cccEEEEEEecCC
Q 007279 334 EVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-A-----TGELLFELVSHST 405 (609)
Q Consensus 334 ev~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE-~-----t~~lvlElr~~~~ 405 (609)
+|.|.+++++||+.+. .+-||.++.. +... + +-.+ +.++-|++.+.|... + ...|.|++..+..
T Consensus 5 ~l~V~v~~a~~L~~~~---~dpyv~v~~~--~~~~--k-T~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 5 QVRVRVIEARQLVGGN---IDPVVKVEVG--GQKK--Y-TSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEcccCCCCC---CCCEEEEEEC--CEee--e-eeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 5888999999999332 5779998865 2111 1 1122 346789999999864 3 2457777776544
Q ss_pred CCccCCCCcccceeEEeecccccCCCCcceEEEEEeecc
Q 007279 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (609)
Q Consensus 406 ~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~ 444 (609)
+++..+||.++|+++++......=-+++|++|..
T Consensus 77 -----~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 77 -----LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred -----cccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 4567999999999999987643345799999853
No 32
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=96.63 E-value=0.018 Score=53.29 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=68.4
Q ss_pred EEEEEEeecCCCCC-cC-CCCceEEEEeccCCCccccccceeee---eeccccceeEEEEeec----cccEEEEEEecCC
Q 007279 335 VFVEIVAVKNLPED-HK-DKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHST 405 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~-~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE~----t~~lvlElr~~~~ 405 (609)
+.|.|++++||+.. .. ...+-||+++......... +++..+ +.++-|++.+.|.... ...|.+.+..+..
T Consensus 17 L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~-k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~ 95 (128)
T cd08392 17 LEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNS-KRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT 95 (128)
T ss_pred EEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccc-eeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence 66778999999754 22 3468899999763222111 122223 4567899999999763 3466666665443
Q ss_pred CCccCCCCcccceeEEeecccccCCCCcceEEEEEee
Q 007279 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (609)
Q Consensus 406 ~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L 442 (609)
+++...||.+.|++.++--+..+=..-+|+.|
T Consensus 96 -----~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 96 -----LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred -----CcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 57889999999999999543223456688876
No 33
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=96.62 E-value=0.033 Score=50.05 Aligned_cols=106 Identities=16% Similarity=0.213 Sum_probs=70.3
Q ss_pred EEEEEEeecCCCCC-c--CCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEee--ccccEEEEEEecCCCCcc
Q 007279 335 VFVEIVAVKNLPED-H--KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE--ATGELLFELVSHSTSKIP 409 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~--~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE--~t~~lvlElr~~~~~~l~ 409 (609)
+.|.|++++||+.. . ....+-||.++..+ ..... +...=+.++.|++.+.|... ....|.|++.-+..
T Consensus 3 l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~--~~~kT-~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~---- 75 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA--QRFKT-QTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR---- 75 (128)
T ss_pred EEEEEEEeeCCCcccCCCCCCcCCeEEEEECC--EEEec-ceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC----
Confidence 45778999999753 2 22356788877431 11110 11122467789999999887 36788888865553
Q ss_pred CCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCC
Q 007279 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (609)
Q Consensus 410 ~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~ 448 (609)
+.+...||.+.|++.++......=..+.|++|.+++..
T Consensus 76 -~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~ 113 (128)
T cd04024 76 -FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPG 113 (128)
T ss_pred -CCCCCcceEEEEEHHHhhcccccCccceeEEccCcccC
Confidence 34668999999999999853112236899999887443
No 34
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=96.58 E-value=0.024 Score=52.11 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=69.4
Q ss_pred EEEEEEeecCCCCCc-C-CCCceEEEEeccCCCc-cccccceeeeeeccccceeEEEEeec-----cccEEEEEEecCCC
Q 007279 335 VFVEIVAVKNLPEDH-K-DKGDLFVFFSKSQPDI-FFNAKQKLTILSKSGMKQVASFQCEA-----TGELLFELVSHSTS 406 (609)
Q Consensus 335 v~l~iv~~kNl~~~~-~-~~~~lFVr~~~~q~d~-~~~~~~~~~iss~s~~k~~~~lqCE~-----t~~lvlElr~~~~~ 406 (609)
+.|.|++++||+... . ...+-||+++....+. ..+ .+...=+.++.|++.+.|+.-+ ...|.|++..+..
T Consensus 18 L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~k-T~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~- 95 (128)
T cd08388 18 LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVK-TRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR- 95 (128)
T ss_pred EEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceee-ccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC-
Confidence 777889999998642 1 3468899998652221 111 0111114567999999995332 2357777776543
Q ss_pred CccCCCCcccceeEEeecccccCCCCcceEEEEEeecc
Q 007279 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~ 444 (609)
+++..+||.+.|++.++--. ...+++-|++|.|
T Consensus 96 ----~~~d~~lG~~~i~L~~l~~~-~~~~~~~~~~~~~ 128 (128)
T cd08388 96 ----YSRDDVIGEVVCPLAGADLL-NEGELLVSREIQP 128 (128)
T ss_pred ----CCCCceeEEEEEeccccCCC-CCceEEEEEeccC
Confidence 56788999999999999543 4688999999865
No 35
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=96.57 E-value=0.029 Score=51.35 Aligned_cols=103 Identities=12% Similarity=0.181 Sum_probs=69.1
Q ss_pred EEEEEEeecCCCCCcC-----------CCCceEEEEeccCCCccccccceeeeeeccccceeEEEEeeccccEEEEEEec
Q 007279 335 VFVEIVAVKNLPEDHK-----------DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSH 403 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~-----------~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE~t~~lvlElr~~ 403 (609)
+.|.|+.++||+.... ...+-||.++.. ...... .+...-+.++.|++.+.|.+.....+.|++..+
T Consensus 6 l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~-~~~~~k-T~~~~~t~~P~Wne~f~~~v~~~~~l~~~v~d~ 83 (132)
T cd04014 6 LKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD-DTHIGK-TSTKPKTNSPVWNEEFTTEVHNGRNLELTVFHD 83 (132)
T ss_pred EEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC-CEEEeE-EeEcCCCCCCCcceeEEEEcCCCCEEEEEEEeC
Confidence 6677899999964321 135778888753 111110 001112456799999999998667788887544
Q ss_pred CCCCccCCCCcccceeEEeecccccCCCCcceEEEEEeeccC
Q 007279 404 STSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (609)
Q Consensus 404 ~~~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~ 445 (609)
.. +.+..++|.+.+++.++... ..-..+.|++|.|.
T Consensus 84 ~~-----~~~~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~~~ 119 (132)
T cd04014 84 AA-----IGPDDFVANCTISFEDLIQR-GSGSFDLWVDLEPQ 119 (132)
T ss_pred CC-----CCCCceEEEEEEEhHHhccc-CCCcccEEEEccCC
Confidence 32 45668899999999999973 13457999999864
No 36
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=96.57 E-value=0.015 Score=54.57 Aligned_cols=98 Identities=15% Similarity=0.071 Sum_probs=70.1
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEee-ccccEEEEEEecCCCCccCCCC
Q 007279 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGA 413 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE-~t~~lvlElr~~~~~~l~~~~~ 413 (609)
++|.+++|++++..+. .+-||.+.-- ..+. +.+..=-+++-|++.+.|+.+ +..++++|++.+.. + .
T Consensus 4 L~V~Vv~Ar~L~~~~~--~dPYV~Ik~g-~~k~---kT~v~~~~nP~WnE~F~F~~~~~~~~L~v~V~dkd~-----~-~ 71 (127)
T cd08394 4 LCVLVKKAKLDGAPDK--FNTYVTLKVQ-NVKS---TTIAVRGSQPCWEQDFMFEINRLDLGLVIELWNKGL-----I-W 71 (127)
T ss_pred EEEEEEEeeCCCCCCC--CCCeEEEEEC-CEEe---EeeECCCCCCceeeEEEEEEcCCCCEEEEEEEeCCC-----c-C
Confidence 6788999999976443 4569998852 2211 101111247899999999997 66779999999662 3 6
Q ss_pred cccceeEEeecccccCCCCcceEEEEEeeccC
Q 007279 414 SKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (609)
Q Consensus 414 sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~ 445 (609)
-.+||.++|+++++......|. ..|+.|.|.
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~-~~Wy~L~~~ 102 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGP-GEWLTLDSE 102 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCC-CccEecChH
Confidence 6789999999999997754333 569999764
No 37
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=96.50 E-value=0.019 Score=51.72 Aligned_cols=102 Identities=17% Similarity=0.259 Sum_probs=68.3
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEeec----cccEEEEEEecCCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHSTS 406 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE~----t~~lvlElr~~~~~ 406 (609)
+.|.|++++||+.. .....+-||+++....... ....+..+ +.++.|++.+.|.... +..|.+++..+..
T Consensus 18 L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~-~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~- 95 (127)
T cd04030 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSK-STRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS- 95 (127)
T ss_pred EEEEEEEEECCCCccCCCCCCceEEEEEEcCCCC-CceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc-
Confidence 77789999999855 2244788999996532110 11112223 4567899999999863 3466666655433
Q ss_pred CccCCCCcccceeEEeecccccCCCCcceEEEEEeec
Q 007279 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~ 443 (609)
++ .++...||.+.|+..++... -..+.|+.|.
T Consensus 96 ~~--~~~~~~iG~~~i~l~~l~~~---~~~~~W~~L~ 127 (127)
T cd04030 96 FL--SREKKLLGQVLIDLSDLDLS---KGFTQWYDLT 127 (127)
T ss_pred cc--CCCCceEEEEEEeccccccc---CCccceEECc
Confidence 21 26788999999999998543 4678999873
No 38
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=96.50 E-value=0.022 Score=52.05 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=67.4
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEe-e----ccccEEEEEEecCCC
Q 007279 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQC-E----ATGELLFELVSHSTS 406 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqC-E----~t~~lvlElr~~~~~ 406 (609)
+.|.|++++||+.......+-||.++......... +.+..+ +.++.|++.+.|+. . .+..|.|+|..+..
T Consensus 15 L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~-~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~- 92 (122)
T cd08381 15 LFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTT-KRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS- 92 (122)
T ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCC-ceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC-
Confidence 67778999999854333467899999652111111 111222 45779999999986 2 24567777776654
Q ss_pred CccCCCCcccceeEEeecccccCCCCcceEEEEEee
Q 007279 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L 442 (609)
+++...||.+.|++.++.... ..+.|+.|
T Consensus 93 ----~~~~~~lG~~~i~l~~l~~~~---~~~~W~~L 121 (122)
T cd08381 93 ----LVENEFLGGVCIPLKKLDLSQ---ETEKWYPL 121 (122)
T ss_pred ----CcCCcEEEEEEEeccccccCC---CccceEEC
Confidence 567889999999999998532 36889886
No 39
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=96.49 E-value=0.039 Score=49.21 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=74.4
Q ss_pred EEEEEEeecCCCCC--cCCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEee-ccccEEEEEEecCCCCcc
Q 007279 335 VFVEIVAVKNLPED--HKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIP 409 (609)
Q Consensus 335 v~l~iv~~kNl~~~--~~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE-~t~~lvlElr~~~~~~l~ 409 (609)
+.|.|++++||+.. .....+-||.++.... ....++..+ +.++.|++.+.|.+. ....+.||+..+..
T Consensus 4 l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~---- 76 (124)
T cd04044 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFND---- 76 (124)
T ss_pred EEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCC----
Confidence 56778999999842 1112578999886542 011111222 456799999989887 36789999887654
Q ss_pred CCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCCCCCCCceEEEEEeecC
Q 007279 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI 464 (609)
Q Consensus 410 ~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S~Tp 464 (609)
+++..+||.+++++.++.... ... +.|..+..+ +...=.|+|.+.+-|
T Consensus 77 -~~~d~~iG~~~~~l~~l~~~~-~~~-~~~~~~~~~----~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 -KRKDKLIGTAEFDLSSLLQNP-EQE-NLTKNLLRN----GKPVGELNYDLRFFP 124 (124)
T ss_pred -CCCCceeEEEEEEHHHhccCc-ccc-CcchhhhcC----CccceEEEEEEEeCC
Confidence 457789999999999999753 321 122333221 112247788777654
No 40
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.47 E-value=0.041 Score=52.53 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=72.2
Q ss_pred EEEEEEeecCCCCC--cCCCCceEEEEeccCCC-ccccccceeee---eeccccceeEEEEee-ccccEEEEEEecCCCC
Q 007279 335 VFVEIVAVKNLPED--HKDKGDLFVFFSKSQPD-IFFNAKQKLTI---LSKSGMKQVASFQCE-ATGELLFELVSHSTSK 407 (609)
Q Consensus 335 v~l~iv~~kNl~~~--~~~~~~lFVr~~~~q~d-~~~~~~~~~~i---ss~s~~k~~~~lqCE-~t~~lvlElr~~~~~~ 407 (609)
+.|.|++++||+.. .....+=||+++.. +| +... +++..+ +.++.|++.+.|... ....|.|++..+...
T Consensus 31 L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Ll-p~~~~~~-k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~- 107 (146)
T cd04028 31 LEVEVIRARGLVQKPGSKVLPAPYVKVYLL-EGKKCIA-KKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR- 107 (146)
T ss_pred EEEEEEEeeCCCcccCCCCCcCCeEEEEEE-CCCcccc-ceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC-
Confidence 67778999999753 22235779999976 44 2211 222222 456789999999887 556788888743332
Q ss_pred ccCCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCC
Q 007279 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (609)
Q Consensus 408 l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~ 448 (609)
+++...||.+.|+++++--.. ....|+.|.|....
T Consensus 108 ---~~~~~~iG~~~i~L~~l~~~~---~~~~Wy~L~~~~~~ 142 (146)
T cd04028 108 ---MDKKVFMGVAQILLDDLDLSN---LVIGWYKLFPTSSL 142 (146)
T ss_pred ---CCCCceEEEEEEEcccccCCC---CceeEEecCCcccc
Confidence 567789999999999974222 46889999987543
No 41
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=96.47 E-value=0.025 Score=51.75 Aligned_cols=101 Identities=15% Similarity=0.197 Sum_probs=69.0
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEeec-----cccEEEEEEecCCCCc
Q 007279 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA-----TGELLFELVSHSTSKI 408 (609)
Q Consensus 335 v~l~iv~~kNl~~~~-~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE~-----t~~lvlElr~~~~~~l 408 (609)
+.|.|++++||+... .....-||++.... ++.-.-+.++.=..++-|++.+.|+..+ ...|.|+|..+..
T Consensus 18 L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp-~~~~~~kTkv~~~~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~--- 93 (124)
T cd08389 18 LTVTVIRAQDIPTKDRGGASSWQVHLVLLP-SKKQRAKTKVQRGPNPVFNETFTFSRVEPEELNNMALRFRLYGVER--- 93 (124)
T ss_pred EEEEEEEecCCCchhcCCCCCcEEEEEEcc-CCcceeecccccCCCCcccCEEEECCCCHHHhccCEEEEEEEECCC---
Confidence 678899999998552 22346799987542 2111101111112577899999998542 3468888888754
Q ss_pred cCCCCcccceeEEeecccccCCCCcceEEEEEeecc
Q 007279 409 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (609)
Q Consensus 409 ~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~ 444 (609)
++....||.+.|+++++--. =....|++|.|
T Consensus 94 --~~~~~~lG~~~i~L~~l~~~---~~~~~w~~L~p 124 (124)
T cd08389 94 --MRKERLIGEKVVPLSQLNLE---GETTVWLTLEP 124 (124)
T ss_pred --cccCceEEEEEEeccccCCC---CCceEEEeCCC
Confidence 57789999999999999432 35889999865
No 42
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=96.45 E-value=0.026 Score=51.63 Aligned_cols=100 Identities=16% Similarity=0.263 Sum_probs=69.5
Q ss_pred EEEEEEEeecCCCCCc--CCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEeec----cccEEEEEEecC
Q 007279 334 EVFVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHS 404 (609)
Q Consensus 334 ev~l~iv~~kNl~~~~--~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE~----t~~lvlElr~~~ 404 (609)
++.|.|++++||+... +...+-||+++......... +.+..+ +.++.|++.+.|.... +..|.|+|..+.
T Consensus 16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~-~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~ 94 (125)
T cd08393 16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRG-KRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRD 94 (125)
T ss_pred EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccc-cccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCC
Confidence 4788899999998652 23468899999763221111 112222 4567999999998863 357888888765
Q ss_pred CCCccCCCCcccceeEEeecccccCCCCcceEEEEEee
Q 007279 405 TSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (609)
Q Consensus 405 ~~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L 442 (609)
. +++...||.+.|++.++-.. =..+.|++|
T Consensus 95 ~-----~~~~~~iG~~~i~L~~~~~~---~~~~~W~~L 124 (125)
T cd08393 95 S-----LGRNSFLGEVEVDLGSWDWS---NTQPTWYPL 124 (125)
T ss_pred C-----CCCCcEeEEEEEecCccccC---CCCcceEEC
Confidence 4 57788999999999998533 135789886
No 43
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=96.44 E-value=0.024 Score=52.86 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=71.6
Q ss_pred EEEEEeecCCCCCcCCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEeec-----------------cccE
Q 007279 336 FVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA-----------------TGEL 396 (609)
Q Consensus 336 ~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE~-----------------t~~l 396 (609)
.|.|++++||+.......+-||+++...++.... .++..+ +.++.|++.+.|.+-. ...+
T Consensus 2 ~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~-~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 2 SVRVLECRDLALKSNGTCDPFARVTLNYSSKTDT-KRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred EEEEEEccCCCcccCCCCCcEEEEEEecCCcCCe-eccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 4678999999755112367899998764321111 112222 5577999999999763 2356
Q ss_pred EEEEEecCCCCccCCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCC
Q 007279 397 LFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (609)
Q Consensus 397 vlElr~~~~~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~ 448 (609)
.||+..... +++...||.+.|+++++... -..+.|+.|.+++..
T Consensus 81 ~i~V~d~~~-----~~~~~~IG~~~i~l~~l~~~---~~~~~W~~L~~~~~~ 124 (137)
T cd08675 81 RVELWHASM-----VSGDDFLGEVRIPLQGLQQA---GSHQAWYFLQPREAP 124 (137)
T ss_pred EEEEEcCCc-----CcCCcEEEEEEEehhhccCC---CcccceEecCCcCCC
Confidence 677665544 46788999999999999853 457999999998643
No 44
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=96.44 E-value=0.022 Score=53.42 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=68.6
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEee----ccccEEEEEEecCCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCE----ATGELLFELVSHSTS 406 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE----~t~~lvlElr~~~~~ 406 (609)
+.|.|++++||+.. .....+.||+++.+..+.....+.+..+ +.++.|++.+.|.=. .+..|.|+|..+..
T Consensus 17 L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~- 95 (138)
T cd08408 17 LSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK- 95 (138)
T ss_pred EEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC-
Confidence 66778999999854 2234688999997643321111122333 456789999999854 24588888888765
Q ss_pred CccCCCCcccceeEEee-----------cccccCCCCcceEEEEEee
Q 007279 407 KIPMTGASKTMGTASLS-----------LQNFISPISKLAVEQWFDL 442 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sis-----------w~dll~~~~~Ls~E~w~~L 442 (609)
+++.+.||.++|+ |.++++. |...+++|-.|
T Consensus 96 ----~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~-~~~~v~~WH~l 137 (138)
T cd08408 96 ----MKRKEMIGWFSLGLNSSGEEEEEHWNEMKES-KGQQVCRWHTL 137 (138)
T ss_pred ----CCCCcEEEEEEECCcCCCchHHHHHHHHHhC-CCCEEeEeeec
Confidence 4678899998886 6666664 56777777553
No 45
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=96.43 E-value=0.02 Score=53.68 Aligned_cols=101 Identities=20% Similarity=0.265 Sum_probs=67.6
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEeec----cccEEEEEEecCCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHSTS 406 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE~----t~~lvlElr~~~~~ 406 (609)
+.|.|++++||+.. .....+-||.++.....+.+. +.+..+ +.++.|++.+.|.-.. ...|.|+|..+..
T Consensus 17 L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~-k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~- 94 (136)
T cd08406 17 LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKIS-KKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE- 94 (136)
T ss_pred EEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCcccc-ccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC-
Confidence 77888999999854 233468899999763222221 112222 4577999999998653 3467777777654
Q ss_pred CccCCCCcccceeEEee----------cccccCCCCcceEEEEEee
Q 007279 407 KIPMTGASKTMGTASLS----------LQNFISPISKLAVEQWFDL 442 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sis----------w~dll~~~~~Ls~E~w~~L 442 (609)
+++...||.+.|. |.+++.. +.-.+++|=.|
T Consensus 95 ----~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~-~~~~v~~WH~l 135 (136)
T cd08406 95 ----DGKTPNVGHVIIGPAASGMGLSHWNQMLAS-LRKPVAMWHPL 135 (136)
T ss_pred ----CCCCCeeEEEEECCCCCChhHHHHHHHHHC-CCCeeeEeeec
Confidence 4667889999987 6677765 56777777443
No 46
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=96.41 E-value=0.022 Score=51.87 Aligned_cols=104 Identities=20% Similarity=0.261 Sum_probs=70.4
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCC--Cccccccce-eeeeeccccceeEEEEee-c--cccEEEEEEecCCCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQP--DIFFNAKQK-LTILSKSGMKQVASFQCE-A--TGELLFELVSHSTSK 407 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~--d~~~~~~~~-~~iss~s~~k~~~~lqCE-~--t~~lvlElr~~~~~~ 407 (609)
+.|.|+.++|++.. .....+-||+++.... +... .+.+ +.=+..+.|++.+.|... + ...+.|++..+..
T Consensus 15 l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~-~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~-- 91 (131)
T cd04026 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETK-QKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR-- 91 (131)
T ss_pred EEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCce-ecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC--
Confidence 67889999999854 2223567888886421 1111 1111 111456799999999865 3 2467788776543
Q ss_pred ccCCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCC
Q 007279 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (609)
Q Consensus 408 l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~ 448 (609)
+.+...||.+.+++.++... ..+.|++|...+.+
T Consensus 92 ---~~~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~~~~ 125 (131)
T cd04026 92 ---TTRNDFMGSLSFGVSELIKM----PVDGWYKLLNQEEG 125 (131)
T ss_pred ---CCCcceeEEEEEeHHHhCcC----ccCceEECcCcccc
Confidence 45778999999999999853 68999999766443
No 47
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=96.41 E-value=0.03 Score=50.40 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=68.6
Q ss_pred EEEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEeec-----cccEEEEEEecC
Q 007279 334 EVFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA-----TGELLFELVSHS 404 (609)
Q Consensus 334 ev~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE~-----t~~lvlElr~~~ 404 (609)
.+.|.|++++||+.. .....+-||+++....+... .+..+ +.++.|++.+.|...+ ...|.|++.-+.
T Consensus 17 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~---~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 17 TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHK---LETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred EEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcc---eeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 367788999999754 22236789999864322111 12222 4467999999987432 235888888665
Q ss_pred CCCccCCCCcccceeEEeecccccCCCCcceEEEEEeecc
Q 007279 405 TSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (609)
Q Consensus 405 ~~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~ 444 (609)
. +++...||.++|++.++.. .-..+.|++|.|
T Consensus 94 ~-----~~~~~~iG~~~i~l~~l~~---~~~~~~W~~l~~ 125 (125)
T cd08386 94 R-----FSRNDPIGEVSLPLNKVDL---TEEQTFWKDLKP 125 (125)
T ss_pred C-----CcCCcEeeEEEEecccccC---CCCcceEEecCC
Confidence 4 4566789999999999874 346899999865
No 48
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=96.40 E-value=0.037 Score=49.93 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=72.6
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEee-c-----cccEEEEEEecCC
Q 007279 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-A-----TGELLFELVSHST 405 (609)
Q Consensus 335 v~l~iv~~kNl~~~~-~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE-~-----t~~lvlElr~~~~ 405 (609)
+.|.|++++||+... ....+-||.++....++. +.++.. +.++.|++.+.|++. + ...|.||+..+..
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~---~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQ---STPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCccc---ccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 456789999998542 233678999886431221 111211 356899999999998 4 4688899988655
Q ss_pred CCccCCCCcccceeEEeecccccCCCCc--ceEEEEEeeccCCC
Q 007279 406 SKIPMTGASKTMGTASLSLQNFISPISK--LAVEQWFDLVPRSG 447 (609)
Q Consensus 406 ~~l~~~~~sk~lG~~sisw~dll~~~~~--Ls~E~w~~L~~~~~ 447 (609)
+++..+||.+.|+..|++...+. -....|+.|..++|
T Consensus 79 -----~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g 117 (125)
T cd04051 79 -----SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG 117 (125)
T ss_pred -----CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC
Confidence 35678899999999999986431 02567999886543
No 49
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=96.40 E-value=0.038 Score=48.90 Aligned_cols=103 Identities=18% Similarity=0.278 Sum_probs=71.5
Q ss_pred EEEEEeecCCCCCc-CCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEeec--cccEEEEEEecCCCCccCCC
Q 007279 336 FVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMTG 412 (609)
Q Consensus 336 ~l~iv~~kNl~~~~-~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE~--t~~lvlElr~~~~~~l~~~~ 412 (609)
.|.|++++|++... ....+-||+++... ..... .+...-+.++.|++.+.|.+.. ...+.|++..+.. +.
T Consensus 2 ~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-~~~~~-T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~-----~~ 74 (115)
T cd04040 2 TVDVISAENLPSADRNGKSDPFVKFYLNG-EKVFK-TKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDR-----GG 74 (115)
T ss_pred EEEEEeeeCCCCCCCCCCCCCeEEEEECC-Cccee-eceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCC-----CC
Confidence 46789999998542 22356789888642 11111 0111124567999999999863 3578888887654 46
Q ss_pred CcccceeEEeecccccCCCCcceEEEEEeeccCCCC
Q 007279 413 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (609)
Q Consensus 413 ~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~ 448 (609)
+.+.||.+.+++.++... -..+.|++|.++++.
T Consensus 75 ~~~~iG~~~~~l~~l~~~---~~~~~~~~L~~~g~~ 107 (115)
T cd04040 75 KDDLLGSAYIDLSDLEPE---ETTELTLPLDGQGGG 107 (115)
T ss_pred CCCceEEEEEEHHHcCCC---CcEEEEEECcCCCCc
Confidence 778999999999999863 457999999988764
No 50
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=96.38 E-value=0.021 Score=52.01 Aligned_cols=103 Identities=10% Similarity=0.103 Sum_probs=71.1
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEee-ccccEEEEEEecCCCCccCCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTG 412 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE-~t~~lvlElr~~~~~~l~~~~ 412 (609)
+.|.|++++|++.. .....+-||+++.. ...... .+...-+.++.|++.+.|.+. +...+.||+-.+.. +.
T Consensus 3 L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~-~~~~~k-T~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~-----~~ 75 (120)
T cd04045 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVN-GIVKGR-TVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEK-----VG 75 (120)
T ss_pred EEEEEEeeECCCCccCCCCcCCEEEEEEC-CEEeec-eeEECCCcCCccCceEEEEecCCCCEEEEEEEECCC-----CC
Confidence 55778999998754 22235679998853 111110 011122467899999999887 56789999876654 45
Q ss_pred CcccceeEEeecccccCCCCcceEEEEEeeccCCCC
Q 007279 413 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (609)
Q Consensus 413 ~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~ 448 (609)
+...||.+.|++.++.+. +.+.|+.|..++.+
T Consensus 76 ~d~~IG~~~~~l~~l~~~----~~~~~~~~~~~~~~ 107 (120)
T cd04045 76 KDRSLGSVEINVSDLIKK----NEDGKYVEYDDEEE 107 (120)
T ss_pred CCCeeeEEEEeHHHhhCC----CCCceEEecCCCcc
Confidence 567899999999999974 56999998776543
No 51
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=96.37 E-value=0.016 Score=53.22 Aligned_cols=85 Identities=21% Similarity=0.207 Sum_probs=56.0
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEeecc----ccEEEEEEecCCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEAT----GELLFELVSHSTS 406 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE~t----~~lvlElr~~~~~ 406 (609)
|.|.+++++||+.. .....+-||+++.........-. +..+ +.++.|++.+.|.+... ..+.||+.-+..
T Consensus 17 l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~-kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~- 94 (136)
T cd08402 17 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKK-KTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR- 94 (136)
T ss_pred EEEEEEEeeCCCcccCCCCCCCeEEEEEEECCccccee-eccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC-
Confidence 67778999999854 22235779999865322111111 1222 44678999999998632 368889987664
Q ss_pred CccCCCCcccceeEEeecc
Q 007279 407 KIPMTGASKTMGTASLSLQ 425 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~ 425 (609)
+++...||.+.|+..
T Consensus 95 ----~~~~~~iG~~~i~~~ 109 (136)
T cd08402 95 ----IGKNDPIGKVVLGCN 109 (136)
T ss_pred ----CCCCceeEEEEECCc
Confidence 466789999999654
No 52
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=96.32 E-value=0.032 Score=53.24 Aligned_cols=104 Identities=14% Similarity=0.230 Sum_probs=69.2
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEee------------c-----cc
Q 007279 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCE------------A-----TG 394 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE------------~-----t~ 394 (609)
+.|.+++++||+.. ....+=||.++...+.+... +.+..+ +.++.|++.+.|.+. + ..
T Consensus 2 L~V~Vi~ArnL~~~-~g~sDPYV~V~l~~~~~k~~-~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLALK-NGTCDPYASVTLIYSNKKQD-TKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCCC-CCCCCceEEEEEeCCcccCc-ccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 57889999999873 22357798888553221111 111222 456789999999994 1 23
Q ss_pred cEEEEEEecCCCCccCCCCcccceeEEeecccccCCCCcceEEEEEeeccCCC
Q 007279 395 ELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (609)
Q Consensus 395 ~lvlElr~~~~~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~ 447 (609)
.|.+++..+.. ++...+||.+.|+..++... .=....|+.|.+.++
T Consensus 80 ~L~i~V~d~~~-----~~~ddfLG~v~i~l~~l~~~--~~~~~~W~~L~~~~~ 125 (148)
T cd04010 80 ELRVDLWHASM-----GGGDVFLGEVRIPLRGLDLQ--AGSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEcCCC-----CCCCceeEEEEEeccccccc--CCcCcceeecCCccc
Confidence 56666655543 46788999999999998864 123589999988754
No 53
>PLN02270 phospholipase D alpha
Probab=96.02 E-value=0.048 Score=64.43 Aligned_cols=128 Identities=12% Similarity=0.233 Sum_probs=92.0
Q ss_pred EEEEEEeecCCCCC-------------------cCCCCceEEEEeccCCCccccccceeeee---eccccceeEEEEee-
Q 007279 335 VFVEIVAVKNLPED-------------------HKDKGDLFVFFSKSQPDIFFNAKQKLTIL---SKSGMKQVASFQCE- 391 (609)
Q Consensus 335 v~l~iv~~kNl~~~-------------------~~~~~~lFVr~~~~q~d~~~~~~~~~~is---s~s~~k~~~~lqCE- 391 (609)
+.|.|++++|||.. ++..+..||.....+ + .+.++..|+ .++.|++.++.+|-
T Consensus 10 l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~--a--~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 10 LHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK--A--RVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred eEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC--c--EEEEEeecCCCCCCCccccceEEeecc
Confidence 45667888888741 122345666655332 1 123445554 36799999999999
Q ss_pred ccccEEEEEEecCCCCccCCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCCCCCCCceEEEEEeecCCCccchh
Q 007279 392 ATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAPHL 471 (609)
Q Consensus 392 ~t~~lvlElr~~~~~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S~TpPvqApyl 471 (609)
...+|+|-+--... =++.+||++.|+=++++.- =.+|+||++...++.--..-..|||.+.+||=.+.|+.
T Consensus 86 ~~~~v~f~vkd~~~------~g~~~ig~~~~p~~~~~~g---~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~ 156 (808)
T PLN02270 86 MASNIIFTVKDDNP------IGATLIGRAYIPVEEILDG---EEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNW 156 (808)
T ss_pred CcceEEEEEecCCc------cCceEEEEEEEEHHHhcCC---CccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcch
Confidence 88999999865443 2456999999999999974 36999999987765433444789999999998888877
Q ss_pred hccc
Q 007279 472 LRMV 475 (609)
Q Consensus 472 l~~v 475 (609)
=+-|
T Consensus 157 ~~gv 160 (808)
T PLN02270 157 GRGI 160 (808)
T ss_pred hccc
Confidence 6665
No 54
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=96.00 E-value=0.08 Score=47.41 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=66.6
Q ss_pred EEEEEEeecCCCCCc--CCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEee--c--cccEEEEEEecCC
Q 007279 335 VFVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCE--A--TGELLFELVSHST 405 (609)
Q Consensus 335 v~l~iv~~kNl~~~~--~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE--~--t~~lvlElr~~~~ 405 (609)
+.|.|++++|++... ....+-||.++....+... + +..+ +.++.|++.+.|.=. . ...+.|++..+..
T Consensus 16 L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~--~-~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 92 (123)
T cd08390 16 LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRS--L-QSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR 92 (123)
T ss_pred EEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCc--e-EeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence 667789999998542 2235779998864222211 1 2222 456789998888632 1 2457777765443
Q ss_pred CCccCCCCcccceeEEeecccccCCCCcceEEEEEeecc
Q 007279 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (609)
Q Consensus 406 ~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~ 444 (609)
.++..+||.+.|+++++.-. .....|++|.|
T Consensus 93 -----~~~~~~iG~~~i~L~~l~~~---~~~~~w~~L~~ 123 (123)
T cd08390 93 -----FSRHCIIGHVLFPLKDLDLV---KGGVVWRDLEP 123 (123)
T ss_pred -----CCCCcEEEEEEEeccceecC---CCceEEEeCCC
Confidence 45678999999999999863 46689999864
No 55
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=95.98 E-value=0.063 Score=48.36 Aligned_cols=90 Identities=9% Similarity=0.109 Sum_probs=61.3
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccce--eeeeeccccceeEEEEee-c----cccEEEEEEecCCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQK--LTILSKSGMKQVASFQCE-A----TGELLFELVSHSTS 406 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~--~~iss~s~~k~~~~lqCE-~----t~~lvlElr~~~~~ 406 (609)
+.|.|++++|++.. .....+-||+++....+......++ ..-+.++.|++.+.|+.- + ..-+.|++..+..
T Consensus 17 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~- 95 (123)
T cd04035 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR- 95 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC-
Confidence 77888999999854 2234689999987533211111111 122567899999999622 1 3468888876643
Q ss_pred CccCCCCcccceeEEeecccccCC
Q 007279 407 KIPMTGASKTMGTASLSLQNFISP 430 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~dll~~ 430 (609)
+ +...||.+.|++.+|...
T Consensus 96 ----~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 96 ----F-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred ----c-CCeeEEEEEEEcccCCCC
Confidence 4 678999999999999964
No 56
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=95.96 E-value=0.039 Score=50.60 Aligned_cols=103 Identities=14% Similarity=0.209 Sum_probs=64.2
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEeec--c--ccEEEEEEecCCCC
Q 007279 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA--T--GELLFELVSHSTSK 407 (609)
Q Consensus 335 v~l~iv~~kNl~~~~-~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE~--t--~~lvlElr~~~~~~ 407 (609)
+.|.|++++|++... ....+-||+++...........++..+ +.++.|++.+.|.+.. . ..|.|+|.-+..
T Consensus 16 L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~-- 93 (134)
T cd08403 16 LTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR-- 93 (134)
T ss_pred EEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC--
Confidence 677789999998542 223688999986421111111111122 3467899999999863 2 258888887654
Q ss_pred ccCCCCcccceeEEeecccccCCCCcceEEEEEeeccCCC
Q 007279 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (609)
Q Consensus 408 l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~ 447 (609)
+++...||.+.|+-. . +.-..+.|.+|....+
T Consensus 94 ---~~~~~~IG~~~l~~~---~--~~~~~~~w~~~~~~~~ 125 (134)
T cd08403 94 ---VGHNELIGVCRVGPN---A--DGQGREHWNEMLANPR 125 (134)
T ss_pred ---CCCCceeEEEEECCC---C--CCchHHHHHHHHHCCC
Confidence 567789999999753 1 1233456666655433
No 57
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=95.96 E-value=0.13 Score=45.37 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=65.2
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEeecc----ccEEEEEEecCCCCccC
Q 007279 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEAT----GELLFELVSHSTSKIPM 410 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE~t----~~lvlElr~~~~~~l~~ 410 (609)
+.|.|++++|++... ..+-||.++... ......+ ...= .++.|++.+.|.+... ..|.+++..+..
T Consensus 2 L~v~vi~a~~l~~~~--~~dpyv~v~~~~-~~~~kT~-~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~----- 71 (117)
T cd08383 2 LRLRILEAKNLPSKG--TRDPYCTVSLDQ-VEVARTK-TVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS----- 71 (117)
T ss_pred eEEEEEEecCCCcCC--CCCceEEEEECC-EEeEecc-eEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc-----
Confidence 457799999998763 368899887532 2111111 1112 5788999999988652 345555554332
Q ss_pred CCCcccceeEEeecccccCCCCcceEEEEEeeccCCCCCCCCCceEEEEEe
Q 007279 411 TGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVS 461 (609)
Q Consensus 411 ~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S 461 (609)
..+...+|++.|. ++.. .=..|.|++|.|.++ .....=.|++.++
T Consensus 72 ~~~~~~~g~v~l~--~~~~---~~~~~~w~~L~~~~~-~~~~~G~l~l~~~ 116 (117)
T cd08383 72 KDRDIVIGKVALS--KLDL---GQGKDEWFPLTPVDP-DSEVQGSVRLRAR 116 (117)
T ss_pred CCCeeEEEEEEec--CcCC---CCcceeEEECccCCC-CCCcCceEEEEEE
Confidence 2333455655554 4332 245799999998755 2223336666665
No 58
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=95.93 E-value=0.1 Score=46.35 Aligned_cols=99 Identities=16% Similarity=0.266 Sum_probs=67.6
Q ss_pred EEEEEEeecCCCCCcC-------CCCceEEEEeccCCCccccccceeeeeeccccceeEEEEeec--cccEEEEEEecCC
Q 007279 335 VFVEIVAVKNLPEDHK-------DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHST 405 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~-------~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE~--t~~lvlElr~~~~ 405 (609)
+.|.|++++||+.... ...+-||.++..+ ...+. +...=+.++-|++.+.|.+.. ...+.|++..+..
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~--~~~kT-~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFKS-KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEECC--EeEEc-cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 5677899999985421 1256788887542 11110 111114567899999998863 5677788765543
Q ss_pred CCccCCCCcccceeEEeecccccCCCCcceEEEEEeeccC
Q 007279 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (609)
Q Consensus 406 ~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~ 445 (609)
+ +...||.+.|++.++... . ..+.|++|.+.
T Consensus 80 -----~-~~~~iG~~~i~l~~l~~~--~-~~~~w~~L~~~ 110 (121)
T cd08391 80 -----D-KDDFLGRLSIDLGSVEKK--G-FIDEWLPLEDV 110 (121)
T ss_pred -----C-CCCcEEEEEEEHHHhccc--C-ccceEEECcCC
Confidence 3 567899999999999874 2 36999999764
No 59
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=95.91 E-value=0.067 Score=48.84 Aligned_cols=100 Identities=14% Similarity=0.178 Sum_probs=66.9
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEeec----cccEEEEEEecCCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHSTS 406 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE~----t~~lvlElr~~~~~ 406 (609)
+.|.|++++||+.. .....+-||+++....+.... ..+..+ +.++.|++.+.|.... +..+.|+|..+..
T Consensus 15 L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~-~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~- 92 (133)
T cd08384 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKS-KHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDI- 92 (133)
T ss_pred EEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccC-CceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCC-
Confidence 78889999999854 223467899999652211111 122223 4567999999999863 3578888886543
Q ss_pred CccCCCCcccceeEEeecccccCCCCcceEEEEEeeccC
Q 007279 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~ 445 (609)
.++...||.+.|+..+ ..-..+.|++|.++
T Consensus 93 ----~~~~~~lG~~~i~l~~-----~~~~~~~W~~~l~~ 122 (133)
T cd08384 93 ----GKSNDYIGGLQLGINA-----KGERLRHWLDCLKN 122 (133)
T ss_pred ----CCCccEEEEEEEecCC-----CCchHHHHHHHHhC
Confidence 4567899999999864 12345778877654
No 60
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=95.85 E-value=0.058 Score=48.63 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=69.7
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEee-c----cccEEEEEEecCCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-A----TGELLFELVSHSTS 406 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE-~----t~~lvlElr~~~~~ 406 (609)
+.|.|++++||+.. .....+-||.++... .. . +.++.- +.++.|++.+.|.+. + ...|.|++..+..
T Consensus 3 L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-~~-~--~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~- 77 (124)
T cd04049 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRT-QE-R--KSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN- 77 (124)
T ss_pred EEEEEEecCCCCCCCCCCCcCceEEEEECC-Ee-e--eeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-
Confidence 56778999999753 222356788887431 11 1 111111 346799999999998 4 3567888776654
Q ss_pred CccCCCCcccceeEEeecccccCCCCcceEEEEEeeccCCC
Q 007279 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~ 447 (609)
+++...||.+.|++.+++... ..+.|++|.|.+-
T Consensus 78 ----~~~d~~iG~~~i~l~~l~~~~---~~~~~~~l~p~~~ 111 (124)
T cd04049 78 ----FSDDDFIGEATIHLKGLFEEG---VEPGTAELVPAKY 111 (124)
T ss_pred ----CCCCCeEEEEEEEhHHhhhCC---CCcCceEeeccce
Confidence 456789999999999999753 4599999998643
No 61
>PLN03008 Phospholipase D delta
Probab=95.83 E-value=0.07 Score=63.33 Aligned_cols=146 Identities=15% Similarity=0.231 Sum_probs=96.6
Q ss_pred CceEEEEeccCCCccccccceeee--eeccccceeEEEEee-ccccEEEEEEecCCCCccCCCCcccceeEEeecccccC
Q 007279 353 GDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFIS 429 (609)
Q Consensus 353 ~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE-~t~~lvlElr~~~~~~l~~~~~sk~lG~~sisw~dll~ 429 (609)
++.||.+..- +... .++..+ +-++-|++.++|+|. +...|+|+|--.-. ++ ..+||.++|+.++|+.
T Consensus 77 SDPYV~I~Lg--~~rv--~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~-----~g-aD~IG~a~IPL~~L~~ 146 (868)
T PLN03008 77 SDPYVTVVVP--QATL--ARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDV-----FG-AQIIGTAKIPVRDIAS 146 (868)
T ss_pred CCceEEEEEC--Ccce--eeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCc-----cC-CceeEEEEEEHHHcCC
Confidence 4678877752 2111 122223 236799999999999 67799999877544 33 4799999999999885
Q ss_pred CCCcceEEEEEeeccCCCCCCCCCceEEEEEeecCCCccchhhccc---------ccccc-CCCcc-------------c
Q 007279 430 PISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAPHLLRMV---------RSRPL-SKSSC-------------F 486 (609)
Q Consensus 430 ~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S~TpPvqApyll~~v---------~~r~~-~~~~~-------------~ 486 (609)
.-.+++|++|...++.-...-..|||.+.++|=-+-|+-=+-| |.--| -.+|| +
T Consensus 147 ---Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~ 223 (868)
T PLN03008 147 ---GERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGT 223 (868)
T ss_pred ---CCceEEEEEccccCCCCCCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCC
Confidence 4569999999887763223336899999999977766544443 22112 22444 3
Q ss_pred cCCC-----CCCCCCCcee---EeeccCCceEE
Q 007279 487 FPLP-----GRIQPAKSWT---RVIDETQSEVI 511 (609)
Q Consensus 487 ~~~~-----~~~q~~~~~t---~v~d~~g~e~~ 511 (609)
+|.. ..-+++++|. .-++.|-.+++
T Consensus 224 ~p~i~l~~g~~y~~~rcwedi~~AI~~Ak~~Iy 256 (868)
T PLN03008 224 LPAIGLDNGKVYEHGKCWEDICYAISEAHHMIY 256 (868)
T ss_pred CCccccCCCccccccccHHHHHHHHHhhhheEE
Confidence 3311 1346688996 35677777766
No 62
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=95.80 E-value=0.063 Score=47.81 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=65.3
Q ss_pred EEEEEEeecCCCCCcC--CCCceEEEEeccCCCccccccceeeeeeccccceeEEEEeec-----cccEEEEEEecCCCC
Q 007279 335 VFVEIVAVKNLPEDHK--DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA-----TGELLFELVSHSTSK 407 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~--~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE~-----t~~lvlElr~~~~~~ 407 (609)
+.|.|++++||+.... ...+-||.++.....+...-.+...-+.++.|++.+.|.+.+ ...|.|++.-+..
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~-- 80 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR-- 80 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC--
Confidence 5677899999985421 235789999854222211101111224567999999998874 3578888877654
Q ss_pred ccCCCCcccceeEEeecccccCCCCcceEEEEEeec
Q 007279 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (609)
Q Consensus 408 l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~ 443 (609)
+++...||.++|++.+|+.. .+|.++.
T Consensus 81 ---~~~dd~lG~~~i~l~~l~~~------~~~~~~~ 107 (111)
T cd04041 81 ---FTADDRLGRVEIDLKELIED------RNWMGRR 107 (111)
T ss_pred ---CCCCCcceEEEEEHHHHhcC------CCCCccc
Confidence 45678999999999999864 3565543
No 63
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=95.70 E-value=0.21 Score=44.36 Aligned_cols=99 Identities=11% Similarity=0.235 Sum_probs=67.3
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEee-ccccEEEEEEecCCCCccCCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTG 412 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE-~t~~lvlElr~~~~~~l~~~~ 412 (609)
+.|.|++++||+.. .....+-||+++..+- . .. .+...=+.++.|++.+.|.+. ....+.|++..+.. +.
T Consensus 3 l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~-~~-T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~-----~~ 74 (119)
T cd08377 3 LQVKVIRASGLAAADIGGKSDPFCVLELVNA-R-LQ-THTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDK-----DK 74 (119)
T ss_pred EEEEEEeeeCCCCCCCCCCCCcEEEEEECCE-e-ee-cceecCCcCCccCcEEEEEecCcCCEEEEEEEECCC-----CC
Confidence 45778999999854 2223577999875421 1 11 001111456789999999986 36788888865543 35
Q ss_pred CcccceeEEeecccccCCCCcceEEEEEeeccCC
Q 007279 413 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (609)
Q Consensus 413 ~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~ 446 (609)
+..+||.+.+++.++... .++|+.|.+..
T Consensus 75 ~~~~iG~~~~~l~~~~~~-----~~~~~~l~~~~ 103 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNG-----ERKWYALKDKK 103 (119)
T ss_pred CCceeeEEEEEHHHCCCC-----CceEEECcccC
Confidence 678999999999998743 26899997653
No 64
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=95.70 E-value=0.06 Score=51.84 Aligned_cols=101 Identities=18% Similarity=0.136 Sum_probs=69.1
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEeec-----cccEEEEEEecCC
Q 007279 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA-----TGELLFELVSHST 405 (609)
Q Consensus 335 v~l~iv~~kNl~~~~-~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE~-----t~~lvlElr~~~~ 405 (609)
+.|.|++++||+... ....+=||.++....+..... .+..+ +.++.|++.+.|.+-. ...|.|+|.-+..
T Consensus 29 L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~-~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~ 107 (162)
T cd04020 29 LHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSK-QKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK 107 (162)
T ss_pred EEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcc-eeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC
Confidence 788899999998552 233577999886533321111 12222 4567999999998642 2357777776554
Q ss_pred CCccCCCCcccceeEEeecccccCCCCcceEEEEEeecc
Q 007279 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (609)
Q Consensus 406 ~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~ 444 (609)
+++..+||.+.|+..++... -..+.|++|..
T Consensus 108 -----~~~d~~lG~v~i~l~~~~~~---~~~~~w~~~~~ 138 (162)
T cd04020 108 -----LSSNDFLGGVRLGLGTGKSY---GQAVDWMDSTG 138 (162)
T ss_pred -----CCCCceEEEEEEeCCccccC---CCccccccCCh
Confidence 56788999999999998753 24689998753
No 65
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=95.68 E-value=0.075 Score=48.88 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=63.2
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee--eeccccceeEEEE--eec--cccEEEEEEecCCCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQ--CEA--TGELLFELVSHSTSK 407 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lq--CE~--t~~lvlElr~~~~~~ 407 (609)
+.|.+++++||+.. .....+-||+++....+......++-.+ +.++.|++.+.|. .+. ...+.|+|..+..
T Consensus 17 L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~-- 94 (136)
T cd08405 17 ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR-- 94 (136)
T ss_pred EEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC--
Confidence 67788999999753 2233678999986533322111111112 4567999988876 222 3568899988754
Q ss_pred ccCCCCcccceeEEeecccccCCCCcceEEEEEeeccC
Q 007279 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (609)
Q Consensus 408 l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~ 445 (609)
+++...||.++|++.+. ....+.|++|..+
T Consensus 95 ---~~~~~~lG~~~i~~~~~-----~~~~~~w~~~~~~ 124 (136)
T cd08405 95 ---LSRNDLIGKIYLGWKSG-----GLELKHWKDMLSK 124 (136)
T ss_pred ---CCCCcEeEEEEECCccC-----CchHHHHHHHHhC
Confidence 45668999999988653 1234555555443
No 66
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=95.68 E-value=0.098 Score=47.79 Aligned_cols=104 Identities=18% Similarity=0.154 Sum_probs=70.4
Q ss_pred EEEEEEEeecCCCCCcCCCCceEEEEeccCCCccccccce-eeeeeccccceeEEEEeeccccEEEEEEecCCCCccCCC
Q 007279 334 EVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQK-LTILSKSGMKQVASFQCEATGELLFELVSHSTSKIPMTG 412 (609)
Q Consensus 334 ev~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~-~~iss~s~~k~~~~lqCE~t~~lvlElr~~~~~~l~~~~ 412 (609)
++.|.|++++..+.......+-||+++.. ..... +.+ ..-+.++.|++.+.|.+.....+.||+.-+.. .+
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~-~~~~~--kT~v~~~t~~P~Wne~f~~~~~~~~~l~~~V~d~~~-----~~ 74 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVD-GQPPK--KTEVSKKTSNPKWNEHFTVLVTPQSTLEFKVWSHHT-----LK 74 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEEC-CcccE--EeeeeCCCCCCccccEEEEEeCCCCEEEEEEEeCCC-----CC
Confidence 46777888875544333336779998753 11011 111 11145779999999999877889999887665 46
Q ss_pred CcccceeEEeecccccCCCCcceEE---EEEeeccCC
Q 007279 413 ASKTMGTASLSLQNFISPISKLAVE---QWFDLVPRS 446 (609)
Q Consensus 413 ~sk~lG~~sisw~dll~~~~~Ls~E---~w~~L~~~~ 446 (609)
...+||.+.|++.+++... ....+ .|++|+.++
T Consensus 75 ~~~~iG~~~i~l~~l~~~~-~~~~~~~~~~~~~~~~~ 110 (125)
T cd04021 75 ADVLLGEASLDLSDILKNH-NGKLENVKLTLNLSSEN 110 (125)
T ss_pred CCcEEEEEEEEHHHhHhhc-CCCccceEEEEEEEccC
Confidence 6789999999999999753 44434 488887543
No 67
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=95.68 E-value=0.2 Score=45.09 Aligned_cols=102 Identities=16% Similarity=0.247 Sum_probs=68.2
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEee-c-cccEEEEEEecCCCCccCC
Q 007279 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIPMT 411 (609)
Q Consensus 335 v~l~iv~~kNl~~~~-~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE-~-t~~lvlElr~~~~~~l~~~ 411 (609)
+.|.+++++||+... ....+-||.++... ..... +...-+.++.|++.+.|... + ...|.|++.-+.. +
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~--~~~kT-~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~-----~ 73 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG--QTLET-SVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDL-----V 73 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC--EEEec-eeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCC-----C
Confidence 456789999997542 22346799988531 11110 11111456789998888876 3 3568888876543 4
Q ss_pred CCcccceeEEeecccccCCCCcceEEEEEeeccCCC
Q 007279 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (609)
Q Consensus 412 ~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~ 447 (609)
++...||.++++..++... -..+.|++|.|...
T Consensus 74 ~~~~~iG~~~~~l~~l~~~---~~~~~w~~L~~~~~ 106 (123)
T cd04025 74 SKNDFLGKVVFSIQTLQQA---KQEEGWFRLLPDPR 106 (123)
T ss_pred CCCcEeEEEEEEHHHcccC---CCCCCEEECCCCCC
Confidence 5678999999999999753 23588999988643
No 68
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=95.58 E-value=0.1 Score=48.12 Aligned_cols=101 Identities=12% Similarity=0.170 Sum_probs=62.3
Q ss_pred EEEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEeec--cc--cEEEEEEecCC
Q 007279 334 EVFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA--TG--ELLFELVSHST 405 (609)
Q Consensus 334 ev~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE~--t~--~lvlElr~~~~ 405 (609)
++.|.|++++||+.. .....+-||+++.......+. ..+..+ +.++.|++.+.|.... .. .+.|++..+..
T Consensus 16 ~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~-~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~ 94 (136)
T cd08404 16 RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRIS-KKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR 94 (136)
T ss_pred eEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceee-eEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC
Confidence 477889999999854 222367899998653222111 111212 3467899988888652 23 45556665544
Q ss_pred CCccCCCCcccceeEEeecccccCCCCcceEEEEEeeccC
Q 007279 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (609)
Q Consensus 406 ~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~ 445 (609)
+++..+||.+.|+.++ .. =..+.|.+|...
T Consensus 95 -----~~~~~~iG~~~~~~~~-~~----~~~~~w~~l~~~ 124 (136)
T cd08404 95 -----VTKNEVIGRLVLGPKA-SG----SGGHHWKEVCNP 124 (136)
T ss_pred -----CCCCccEEEEEECCcC-CC----chHHHHHHHHhC
Confidence 4677899999998776 21 124666666543
No 69
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=95.51 E-value=0.22 Score=45.16 Aligned_cols=115 Identities=14% Similarity=0.265 Sum_probs=73.5
Q ss_pred EEEEEEeecCCCCCc-CCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEee-ccccEEEEEEecCCCCccC
Q 007279 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPM 410 (609)
Q Consensus 335 v~l~iv~~kNl~~~~-~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE-~t~~lvlElr~~~~~~l~~ 410 (609)
+.|.|+.++||+... ....+-||.++.. ... + .++-.+ +.++-|++.+.|.+- +..-+.|++..+..
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~-~~~-~--~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~----- 72 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD-NEV-I--IRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDT----- 72 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC-CEe-e--eeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCC-----
Confidence 578899999997552 2235678887743 111 1 112223 346789998888886 34677777765543
Q ss_pred CCCcccceeEEeecccccCCCCcceEEEEEeeccCCCCCCCCCceEEEEEe
Q 007279 411 TGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVS 461 (609)
Q Consensus 411 ~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S 461 (609)
+.+...||.+.|+.+++... + =.++.|++|.+.++. +..+=.+.+.+|
T Consensus 73 ~~~d~~iG~~~~~~~~~~~~-~-~~~~~W~~L~~~~~~-~~~~G~i~l~~~ 120 (121)
T cd04054 73 LSRDDVIGKVSLTREVISAH-P-RGIDGWMNLTEVDPD-EEVQGEIHLELS 120 (121)
T ss_pred CCCCCEEEEEEEcHHHhccC-C-CCCCcEEECeeeCCC-CccccEEEEEEE
Confidence 45678899999999888753 2 246899999875432 223335555554
No 70
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=95.44 E-value=0.091 Score=48.57 Aligned_cols=100 Identities=16% Similarity=0.260 Sum_probs=65.8
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCc-cccccceeee---eeccccceeEEEEeec----cccEEEEEEecCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDI-FFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHST 405 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~-~~~~~~~~~i---ss~s~~k~~~~lqCE~----t~~lvlElr~~~~ 405 (609)
+.|.|++++||+.. .+...+-||+.+.+ ||. ...-+.+..+ +.++.|++.+.|.=.. ...|.|.|..+..
T Consensus 16 L~V~V~~arnL~~~~~~~~~dpyVKv~Ll-p~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~ 94 (124)
T cd08680 16 LVISVEQLRNLSALSIPENSKVYVRVALL-PCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP 94 (124)
T ss_pred EEEEEeEecCCcccccCCCCCeEEEEEEc-cCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC
Confidence 67778999999764 33346899999965 442 1111222223 4567899988887432 3466666666532
Q ss_pred CCccCCCCcccceeEEeecccccCCCCcceEEEEEee
Q 007279 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (609)
Q Consensus 406 ~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L 442 (609)
++....||.+.|++.++-.... ...+|++|
T Consensus 95 -----~~~~~~lG~~~i~L~~~~~~~~--~~~~Wy~l 124 (124)
T cd08680 95 -----DQQEECLGGAQISLADFESSEE--MSTKWYNL 124 (124)
T ss_pred -----CCceeEEEEEEEEhhhccCCCc--cccccccC
Confidence 5778899999999999933222 36778764
No 71
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=95.44 E-value=0.41 Score=42.83 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=68.5
Q ss_pred EEEEEEEEeecCCCCCc---CCCCceEEEEeccCCCc--ccccccee-eeee-ccccceeEEEEee-cc-ccEEEEEEec
Q 007279 333 VEVFVEIVAVKNLPEDH---KDKGDLFVFFSKSQPDI--FFNAKQKL-TILS-KSGMKQVASFQCE-AT-GELLFELVSH 403 (609)
Q Consensus 333 ~ev~l~iv~~kNl~~~~---~~~~~lFVr~~~~q~d~--~~~~~~~~-~iss-~s~~k~~~~lqCE-~t-~~lvlElr~~ 403 (609)
+.+.|.|++++|++... ....+.||.++....+. .-..+.++ .-.+ ++-|++.+.|++. +. .-+.|++..+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 45788999999997532 23468899888642221 00111122 1133 7789999999977 32 3567777665
Q ss_pred CCCCccCCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCC
Q 007279 404 STSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (609)
Q Consensus 404 ~~~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~ 448 (609)
.. + +.++||.+.++..+|... .+|+.|..+++.
T Consensus 82 ~~-----~-~~~~iG~~~~~l~~l~~g------~~~~~l~~~~~~ 114 (128)
T cd00275 82 DS-----G-DDDFLGQACLPLDSLRQG------YRHVPLLDSKGE 114 (128)
T ss_pred CC-----C-CCcEeEEEEEEhHHhcCc------eEEEEecCCCCC
Confidence 43 3 668999999999999652 378999877664
No 72
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=95.35 E-value=0.14 Score=45.79 Aligned_cols=99 Identities=16% Similarity=0.270 Sum_probs=64.5
Q ss_pred EEEEEEeecCCCCCc--CCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEeec----cccEEEEEEecCC
Q 007279 335 VFVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHST 405 (609)
Q Consensus 335 v~l~iv~~kNl~~~~--~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE~----t~~lvlElr~~~~ 405 (609)
+.|.|++++||+... ....+-||+++....+.... +.+..+ +.++.|++.+.|.=.. ...+.|++..+..
T Consensus 16 L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 94 (123)
T cd08521 16 LEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQS-KRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR 94 (123)
T ss_pred EEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCc-eeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 667789999997543 23467899998652211111 112222 4567899988876332 3467888765443
Q ss_pred CCccCCCCcccceeEEeecccccCCCCcceEEEEEee
Q 007279 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (609)
Q Consensus 406 ~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L 442 (609)
+++...||.+.|+.+++.- .-..+.|+.|
T Consensus 95 -----~~~~~~iG~~~i~l~~l~~---~~~~~~w~~l 123 (123)
T cd08521 95 -----FGRNTFLGEVEIPLDSWDL---DSQQSEWYPL 123 (123)
T ss_pred -----CcCCceeeEEEEecccccc---cCCCccEEEC
Confidence 4567899999999999953 2346888875
No 73
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=95.26 E-value=0.24 Score=45.72 Aligned_cols=102 Identities=17% Similarity=0.094 Sum_probs=68.5
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEecc---CCCccccccceeee--eeccccceeEEEEeecc-----ccEEEEEEecC
Q 007279 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKS---QPDIFFNAKQKLTI--LSKSGMKQVASFQCEAT-----GELLFELVSHS 404 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~~~~~lFVr~~~~---q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE~t-----~~lvlElr~~~ 404 (609)
+.|.+++++||+.......+=||.++.. .+++.-. .++..+ +.++-|++.+.|..... ..|.|++.-+.
T Consensus 2 L~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k-~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRK-FATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccE-eeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 4577899999986522335789988864 2332111 112222 23678999999987532 24666776653
Q ss_pred CCCccCCCCcccceeEEeecccccCCCCcceEEEEEeeccC
Q 007279 405 TSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (609)
Q Consensus 405 ~~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~ 445 (609)
+ +++..+||.+.|+++++.... ..+.|++|.+.
T Consensus 81 --~---~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~~ 113 (120)
T cd08395 81 --F---ARDDRLVGVTVLQLRDIAQAG---SCACWLPLGRR 113 (120)
T ss_pred --c---cCCCCEEEEEEEEHHHCcCCC---cEEEEEECcCc
Confidence 3 577889999999999999653 57889999664
No 74
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=95.14 E-value=0.14 Score=41.64 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=65.8
Q ss_pred EEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEeec--cccEEEEEEecCCCCccC
Q 007279 336 FVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPM 410 (609)
Q Consensus 336 ~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE~--t~~lvlElr~~~~~~l~~ 410 (609)
.|.|+++++++.. .....+.||+++.... .. .++..+ +.++.|++.+.|.+.. ...+.||+..+.+
T Consensus 2 ~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~-~~---~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~----- 72 (102)
T cd00030 2 RVTVIEARNLPAKDLNGKSDPYVKVSLGGK-QK---FKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDR----- 72 (102)
T ss_pred EEEEEeeeCCCCcCCCCCCCcEEEEEeccC-ce---EecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCC-----
Confidence 4678899998753 3345788999886631 11 111122 3567899989998886 6789999988877
Q ss_pred CCCcccceeEEeecccccCCCCcceEEEEEe
Q 007279 411 TGASKTMGTASLSLQNFISPISKLAVEQWFD 441 (609)
Q Consensus 411 ~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~ 441 (609)
..+.+++|.+.++..++.. ..-..+.|++
T Consensus 73 ~~~~~~ig~~~~~l~~l~~--~~~~~~~~~~ 101 (102)
T cd00030 73 FSKDDFLGEVEIPLSELLD--SGKEGELWLP 101 (102)
T ss_pred CCCCceeEEEEEeHHHhhh--cCCcCcceec
Confidence 3467899999999999882 1234455554
No 75
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=95.06 E-value=0.47 Score=44.29 Aligned_cols=116 Identities=11% Similarity=0.106 Sum_probs=74.8
Q ss_pred EEEEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEee-c-cccEEEEEEecCCCCcc
Q 007279 333 VEVFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIP 409 (609)
Q Consensus 333 ~ev~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE-~-t~~lvlElr~~~~~~l~ 409 (609)
=.|.|.+++++|++.. .....+-||.++.. +.... .....-+.++.|++.+.|... + ...+.||+..+..
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~--~~~~k-T~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~---- 87 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG--SQEHK-TKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF---- 87 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC--CEeee-ccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC----
Confidence 3477889999999754 22235678988853 21111 001111456799999999885 2 3568888886653
Q ss_pred CCCCcccceeEEeecccccC--CCCcceEEEEEeeccCCCCCCCCCceEEEEEee
Q 007279 410 MTGASKTMGTASLSLQNFIS--PISKLAVEQWFDLVPRSGNVSSKPISLRIAVSF 462 (609)
Q Consensus 410 ~~~~sk~lG~~sisw~dll~--~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S~ 462 (609)
+.+..+||.+.|++.+++. ..+.-.+.+|+.+.... .-.+++.++|
T Consensus 88 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~------~g~i~l~~~~ 135 (136)
T cd08375 88 -FSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVP------TGEVVVKLDL 135 (136)
T ss_pred -CCCCCeeEEEEEEHHHhccccccCCCcEEEEecccccc------ceeEEEEEEe
Confidence 4566899999999999997 12345567888874332 1356665553
No 76
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=95.05 E-value=0.48 Score=43.71 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=71.9
Q ss_pred EEEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee--eeccccceeEEEE-ee-cc---------ccEEEE
Q 007279 334 EVFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQ-CE-AT---------GELLFE 399 (609)
Q Consensus 334 ev~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lq-CE-~t---------~~lvlE 399 (609)
++.|.|++++|++.. .....+-||.++.. +.. .++..+ +.++.|++.+.|. ++ ++ ..+.||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~--~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL--NQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC--Cee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 577889999999854 33346778888753 111 112222 3466899999886 33 11 257889
Q ss_pred EEecCCCCccCCCCcccceeEEe-ecccccCCCCcceEEEEEeeccCCCCCCCCCceEEEEEee
Q 007279 400 LVSHSTSKIPMTGASKTMGTASL-SLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSF 462 (609)
Q Consensus 400 lr~~~~~~l~~~~~sk~lG~~si-sw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S~ 462 (609)
+.-+.. +++...||++.+ +...+..+.+.-...+|++|..++...| .|-+++++
T Consensus 77 V~d~d~-----~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~G----eil~~~~~ 131 (135)
T cd04017 77 LFDQDS-----VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAG----ELLAAFEL 131 (135)
T ss_pred EEeCcC-----CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchh----heeEEeEE
Confidence 887654 466789999997 4433433334567889999976544222 45555543
No 77
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=94.95 E-value=0.23 Score=40.89 Aligned_cols=90 Identities=21% Similarity=0.305 Sum_probs=62.9
Q ss_pred EEEEEEeecCCCCCcC-CCCceEEEEeccCCCccccccceeee-eeccccceeEEEEeec--cccEEEEEEecCCCCccC
Q 007279 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTI-LSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPM 410 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~-~~~~lFVr~~~~q~d~~~~~~~~~~i-ss~s~~k~~~~lqCE~--t~~lvlElr~~~~~~l~~ 410 (609)
+.|.|++++|++.... ...+.||+++....+ ....+.+..- +.++.|++.+.|.|.. ...+.|++..+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~----- 75 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP-KEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDR----- 75 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc-cceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCC-----
Confidence 4577899999875532 347899999976443 1111111211 2377999999999985 6788888877665
Q ss_pred CCCcccceeEEeecccccCC
Q 007279 411 TGASKTMGTASLSLQNFISP 430 (609)
Q Consensus 411 ~~~sk~lG~~sisw~dll~~ 430 (609)
..+..++|.+++++.++...
T Consensus 76 ~~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 76 FGRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred ccCCceeEEEEEEHHHcccC
Confidence 23678999999999998865
No 78
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=94.93 E-value=0.17 Score=47.81 Aligned_cols=85 Identities=19% Similarity=0.268 Sum_probs=58.3
Q ss_pred EEEEEEeecCCCCCc---CCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEeec----cccEEEEEEecC
Q 007279 335 VFVEIVAVKNLPEDH---KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHS 404 (609)
Q Consensus 335 v~l~iv~~kNl~~~~---~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE~----t~~lvlElr~~~ 404 (609)
+.|.|+.++||+... ..+.+-||.++....++... +++..+ +.++-|++.+.|.=.. ...|.|+|..+.
T Consensus 17 L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~-kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d 95 (138)
T cd08407 17 LLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLK-KKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQD 95 (138)
T ss_pred EEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccc-eeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCC
Confidence 667789999997542 12368999999764333332 222223 4567899999997432 356889988876
Q ss_pred CCCccCCCCcccceeEEeecc
Q 007279 405 TSKIPMTGASKTMGTASLSLQ 425 (609)
Q Consensus 405 ~~~l~~~~~sk~lG~~sisw~ 425 (609)
. +++...||.++|..+
T Consensus 96 ~-----~~~~d~iG~v~lg~~ 111 (138)
T cd08407 96 S-----PGQSLPLGRCSLGLH 111 (138)
T ss_pred C-----CcCcceeceEEecCc
Confidence 5 567889999999953
No 79
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=94.83 E-value=0.2 Score=44.11 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=60.9
Q ss_pred EEEEeecCCCCCc-CCCCceEEEEeccCCC-ccccccceeee--eeccccceeEEEEeec------cccEEEEEEecCCC
Q 007279 337 VEIVAVKNLPEDH-KDKGDLFVFFSKSQPD-IFFNAKQKLTI--LSKSGMKQVASFQCEA------TGELLFELVSHSTS 406 (609)
Q Consensus 337 l~iv~~kNl~~~~-~~~~~lFVr~~~~q~d-~~~~~~~~~~i--ss~s~~k~~~~lqCE~------t~~lvlElr~~~~~ 406 (609)
+.+++++||+... ....+-||+++....+ ......++-.+ +.++.|+ .+.|.++. ...|.|||..+..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 3467889987542 2236779999865433 11111112222 4567889 68887752 5689999998764
Q ss_pred CccCCCCcccceeEEeecccccCCCCcceE
Q 007279 407 KIPMTGASKTMGTASLSLQNFISPISKLAV 436 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~dll~~~~~Ls~ 436 (609)
+++...||.+.+++++|+.. ...+.
T Consensus 82 ----~~~d~~iG~~~~~l~~l~~~-~~~~~ 106 (110)
T cd04047 82 ----SGKHDLIGEFETTLDELLKS-SPLEF 106 (110)
T ss_pred ----CCCCcEEEEEEEEHHHHhcC-CCceE
Confidence 56778999999999999953 34443
No 80
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=94.71 E-value=0.84 Score=41.60 Aligned_cols=115 Identities=12% Similarity=0.128 Sum_probs=73.2
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCcccccccee-eeeeccccceeEEEEee-ccccEEEEEEecCCCCccCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKL-TILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMT 411 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~-~iss~s~~k~~~~lqCE-~t~~lvlElr~~~~~~l~~~ 411 (609)
+.|.|++++||+.. .....+-||.++.. +.. . +.++ .-+.++.|++.+.|+.. +...+.|||.-+.. +
T Consensus 5 ~~V~v~~A~~L~~~d~~g~~dPyv~v~~~-~~~-~--kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~-----~ 75 (126)
T cd04046 5 TQVHVHSAEGLSKQDSGGGADPYVIIKCE-GES-V--RSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNL-----L 75 (126)
T ss_pred EEEEEEeCcCCCCCCCCCCcCccEEEEEC-CEE-E--EeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCC-----C
Confidence 66778999999754 22236779988743 211 1 1111 11456799999999876 66789999987643 2
Q ss_pred CCcccceeEEeecccccCCCCcceEEEEEeeccCCCCCCCCCc-eEEEEEeecC
Q 007279 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPI-SLRIAVSFTI 464 (609)
Q Consensus 412 ~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~-~lrva~S~Tp 464 (609)
+ ...||.++++.+++.. ...+++.|...+...+.+.. .|+|-+++++
T Consensus 76 ~-d~~lG~~~~~l~~~~~-----~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 C-DEFLGQATLSADPNDS-----QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred C-CCceEEEEEecccCCC-----cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 3 5899999999987542 23477888644333333332 6666666543
No 81
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=94.68 E-value=0.37 Score=46.61 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=67.9
Q ss_pred EEEEEEeecC--CCCC-cCCCCceEEEEeccCC-Cccccccceeee---eeccccceeEEEEee----------ccccEE
Q 007279 335 VFVEIVAVKN--LPED-HKDKGDLFVFFSKSQP-DIFFNAKQKLTI---LSKSGMKQVASFQCE----------ATGELL 397 (609)
Q Consensus 335 v~l~iv~~kN--l~~~-~~~~~~lFVr~~~~q~-d~~~~~~~~~~i---ss~s~~k~~~~lqCE----------~t~~lv 397 (609)
..|.|+.++| +|.+ .....+-||.|+..-| +..-.. +..+ +.++-|++.+.|.=. ..+.|.
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~--KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSG--KTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLK 81 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCcee--ecCcccCCCCCcccceEEEEeccccchhhhhccCCcEE
Confidence 4566777777 5554 2334689999986433 322211 2223 556789998887643 245799
Q ss_pred EEEEecCCCCccCCCCcccceeEEeecccccCCCCcceEEEEEeecc
Q 007279 398 FELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (609)
Q Consensus 398 lElr~~~~~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~ 444 (609)
||+..+.. + +++.++||++.+.+++|.... .++.|++|..
T Consensus 82 ~~V~d~~~-f---~~~D~~iG~~~i~L~~l~~~~---~~~~~~~L~~ 121 (155)
T cd08690 82 FEVYHKGG-F---LRSDKLLGTAQVKLEPLETKC---EIHESVDLMD 121 (155)
T ss_pred EEEEeCCC-c---ccCCCeeEEEEEEcccccccC---cceEEEEhhh
Confidence 99977654 2 478999999999999997642 4667999874
No 82
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=94.66 E-value=0.79 Score=41.75 Aligned_cols=101 Identities=15% Similarity=0.235 Sum_probs=66.9
Q ss_pred EEEEEEeecCCCCC-c-CCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEee-ccccEEEEEEecCCCCccCC
Q 007279 335 VFVEIVAVKNLPED-H-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMT 411 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~-~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE-~t~~lvlElr~~~~~~l~~~ 411 (609)
+.|.|+.++||+.. . ....+-||.++.. .....+. +...=+.++-|++.+.|.+- +...+.|++..+.. +
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~-~~~~~kT-~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~-----~ 74 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD-QEEVFRT-KTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDV-----L 74 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC-CccEEEe-eEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCC-----C
Confidence 45678999999864 2 1234678888652 1111110 01111457799999999986 34567777654443 4
Q ss_pred CCcccceeEEeecccccCCCCcceEEEEEeeccC
Q 007279 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (609)
Q Consensus 412 ~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~ 445 (609)
++...||.++|+.+++... -..+.|++|.|.
T Consensus 75 ~~~~~iG~~~i~l~~l~~~---~~~~~w~~L~~~ 105 (121)
T cd08401 75 RRDSVIGKVAIKKEDLHKY---YGKDTWFPLQPV 105 (121)
T ss_pred CCCceEEEEEEEHHHccCC---CCcEeeEEEEcc
Confidence 5668899999999999863 347999999885
No 83
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=94.56 E-value=0.25 Score=40.08 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=55.2
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEee--ccccEEEEEEecCCCCc
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCE--ATGELLFELVSHSTSKI 408 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE--~t~~lvlElr~~~~~~l 408 (609)
+.|.|++++||+.. .....+.||+++-..... . ..+..+ +..+.|++.+.|.|. ....|.|+|.....
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~-~--~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~--- 74 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES-T--KYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDS--- 74 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC-E--EEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETS---
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee-e--eeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCC---
Confidence 35678999999874 334579999999665332 0 112222 345689999999966 45679999997776
Q ss_pred cCCCCcccceeEE
Q 007279 409 PMTGASKTMGTAS 421 (609)
Q Consensus 409 ~~~~~sk~lG~~s 421 (609)
+++.++||.+.
T Consensus 75 --~~~~~~iG~~~ 85 (85)
T PF00168_consen 75 --FGKDELIGEVK 85 (85)
T ss_dssp --SSSEEEEEEEE
T ss_pred --CCCCCEEEEEC
Confidence 56688999863
No 84
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=94.47 E-value=0.27 Score=45.26 Aligned_cols=91 Identities=21% Similarity=0.202 Sum_probs=61.6
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccc-cccceeee---eeccccceeEEEEeec------cccEEEEEEec
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFF-NAKQKLTI---LSKSGMKQVASFQCEA------TGELLFELVSH 403 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~-~~~~~~~i---ss~s~~k~~~~lqCE~------t~~lvlElr~~ 403 (609)
+.|.|++++||+.. .....+-||+++....+.+- ....+..+ +.++.|++.+.|.+.. ...+.|++.-+
T Consensus 18 L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~ 97 (133)
T cd04009 18 LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDY 97 (133)
T ss_pred EEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEec
Confidence 77788999999854 22346889999865332210 01122333 2456899999999863 23677887766
Q ss_pred CCCCccCCCCcccceeEEeecccccCC
Q 007279 404 STSKIPMTGASKTMGTASLSLQNFISP 430 (609)
Q Consensus 404 ~~~~l~~~~~sk~lG~~sisw~dll~~ 430 (609)
.. +++...||.+.|+++++...
T Consensus 98 d~-----~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 98 DL-----LGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred CC-----CCCCcEeEEEEEeHHHCCcc
Confidence 43 46778999999999999854
No 85
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=94.29 E-value=0.27 Score=45.53 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=54.0
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEeec--cc--cEEEEEEecCCCC
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA--TG--ELLFELVSHSTSK 407 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE~--t~--~lvlElr~~~~~~ 407 (609)
+.|.|+.++||+.. .....+-||.++...+.+.+..+++..+ +.++-|++.+.|.-.. .. -+.|++..+..
T Consensus 16 L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~-- 93 (135)
T cd08410 16 LNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV-- 93 (135)
T ss_pred EEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC--
Confidence 67788999999754 2234688999886433222221111112 3567999999998742 22 47788887654
Q ss_pred ccCCCCcccceeEEeec
Q 007279 408 IPMTGASKTMGTASLSL 424 (609)
Q Consensus 408 l~~~~~sk~lG~~sisw 424 (609)
.++..+||.+.|+-
T Consensus 94 ---~~~~~~iG~~~l~~ 107 (135)
T cd08410 94 ---KSSNDFIGRIVIGQ 107 (135)
T ss_pred ---CCCCcEEEEEEEcC
Confidence 46778888877653
No 86
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=94.29 E-value=1.2 Score=40.68 Aligned_cols=104 Identities=13% Similarity=0.284 Sum_probs=69.4
Q ss_pred EEEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEee-ccccEEEEEEecCCCCcc
Q 007279 334 EVFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIP 409 (609)
Q Consensus 334 ev~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE-~t~~lvlElr~~~~~~l~ 409 (609)
.+.|.|++++||+.. .....+-||+++.. +.. .++..+ +.++.|++.+.|.|. +...+.|++..+......
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~~~---~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~ 76 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG--KTK---KRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKS 76 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC--CEe---eecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccc
Confidence 367889999999854 22235679998853 211 111122 456799999999996 566788888665432110
Q ss_pred ------CCCCcccceeEEeecccccCCCCcceEEEEEeeccCCC
Q 007279 410 ------MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (609)
Q Consensus 410 ------~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~ 447 (609)
...+-..||.+.|++.++-.. .+.|++|.++++
T Consensus 77 ~~~~~~~~~~~~~iG~~~i~l~~~~~~-----~~~w~~L~~~~~ 115 (127)
T cd04027 77 RLKQKFTRESDDFLGQTIIEVRTLSGE-----MDVWYNLEKRTD 115 (127)
T ss_pred ccceeccccCCCcceEEEEEhHHccCC-----CCeEEECccCCC
Confidence 013577899999999987532 368999998753
No 87
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=94.16 E-value=0.7 Score=43.54 Aligned_cols=108 Identities=14% Similarity=0.060 Sum_probs=70.7
Q ss_pred EEEEEeecCCCCCcCCCCceEEEEeccCCCccc--------cccceeee--eecccc-ceeEEEEeeccccEEEEEEecC
Q 007279 336 FVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFF--------NAKQKLTI--LSKSGM-KQVASFQCEATGELLFELVSHS 404 (609)
Q Consensus 336 ~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~--------~~~~~~~i--ss~s~~-k~~~~lqCE~t~~lvlElr~~~ 404 (609)
-|.++.++||+...-...+=||.+.....+..+ +..++-.+ +.++.| ++.+.|.+.....|.+|+.-+.
T Consensus 4 ~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~V~D~~ 83 (137)
T cd08691 4 SLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPTDVLEIEVKDKF 83 (137)
T ss_pred EEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEEEEecC
Confidence 356789999984322236778888865322210 11112222 346799 9999999998888999997643
Q ss_pred CCCccCCCCcccceeEEeecccccCCCCcceEEEEEeeccC
Q 007279 405 TSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (609)
Q Consensus 405 ~~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~ 445 (609)
+.- .......||.+.|++.++++..-+-..+.|+.|...
T Consensus 84 ~~~--~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 84 AKS--RPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred CCC--CccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 310 011248999999999999976434458889988754
No 88
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=94.06 E-value=0.36 Score=46.49 Aligned_cols=97 Identities=16% Similarity=0.301 Sum_probs=64.2
Q ss_pred EEEEEEEEEeecCCCCC-cCCCCceEEEEeccCCCcc------c------------------cccceeee---eeccccc
Q 007279 332 IVEVFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIF------F------------------NAKQKLTI---LSKSGMK 383 (609)
Q Consensus 332 ~~ev~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~------~------------------~~~~~~~i---ss~s~~k 383 (609)
+..+.|.|++++||+.. .....+=||.+...+.... . ... +..+ +.++.|+
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-kT~v~~~tlnP~Wn 105 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIK-VTEVKPQTLNPVWN 105 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccE-ecceecCCCCCccc
Confidence 34466667999999754 2223567888874321100 0 001 2222 3567999
Q ss_pred eeEEEEeec--cccEEEEEEecCCCCccCCCCcccceeEEeecccccCCCCcceEEEEEee
Q 007279 384 QVASFQCEA--TGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (609)
Q Consensus 384 ~~~~lqCE~--t~~lvlElr~~~~~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L 442 (609)
+.+.|.+.. +..+.|++.-+. ..+||.++|+.+++.. .. ++.|++|
T Consensus 106 E~F~f~v~~~~~~~L~i~V~D~d---------d~~IG~v~i~l~~l~~--~~--~d~W~~L 153 (153)
T cd08676 106 ETFRFEVEDVSNDQLHLDIWDHD---------DDFLGCVNIPLKDLPS--CG--LDSWFKL 153 (153)
T ss_pred cEEEEEeccCCCCEEEEEEEecC---------CCeEEEEEEEHHHhCC--CC--CCCeEeC
Confidence 999999973 567888888654 5679999999999983 22 5999986
No 89
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=93.80 E-value=0.4 Score=45.59 Aligned_cols=91 Identities=16% Similarity=0.228 Sum_probs=64.0
Q ss_pred EEEEEEeecCCCCCcCCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEee-ccccEEEEEEecCCCCccCCCC
Q 007279 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGA 413 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE-~t~~lvlElr~~~~~~l~~~~~ 413 (609)
+.|.+++++|++.......+-||+++... ...+ .+...=+.++-|++.+.|... +...+.||+.-+.. +.+
T Consensus 4 L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~--~~~k-T~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~-----~~~ 75 (145)
T cd04038 4 LKVRVVRGTNLAVRDFTSSDPYVVLTLGN--QKVK-TRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDT-----FSK 75 (145)
T ss_pred EEEEEEeeECCCCCCCCCcCcEEEEEECC--EEEE-eeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCC-----CCC
Confidence 66778999999754223467899888532 1111 011112456899999999987 67789999987765 456
Q ss_pred cccceeEEeecccccCCCCcc
Q 007279 414 SKTMGTASLSLQNFISPISKL 434 (609)
Q Consensus 414 sk~lG~~sisw~dll~~~~~L 434 (609)
...||.+.|++++|+.. .++
T Consensus 76 dd~iG~a~i~l~~l~~~-~~~ 95 (145)
T cd04038 76 DDSMGEAEIDLEPLVEA-AKL 95 (145)
T ss_pred CCEEEEEEEEHHHhhhh-hhh
Confidence 68899999999999976 344
No 90
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=93.62 E-value=0.58 Score=43.59 Aligned_cols=93 Identities=15% Similarity=0.094 Sum_probs=63.8
Q ss_pred ceEEEEEEEEEeecCCCCCcCCCCceEEEEeccCCCccccccceeeeeeccccceeEEEEe-e--ccccEEEEEEecCCC
Q 007279 330 LKIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQC-E--ATGELLFELVSHSTS 406 (609)
Q Consensus 330 ~~~~ev~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqC-E--~t~~lvlElr~~~~~ 406 (609)
+-+-.|.|.|++++||+.......+-||+++... . ..+ .+.+.-+.++.|++.+.|.. + ....|.|||.-+..
T Consensus 25 ~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~-~-~~k-T~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~- 100 (127)
T cd04032 25 RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGG-Q-EKR-TEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN- 100 (127)
T ss_pred CCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECC-c-ccc-CceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC-
Confidence 4455688999999999854333467899998542 1 111 01111134679999999974 3 35688888888766
Q ss_pred CccCCCCcccceeEEeecccccCC
Q 007279 407 KIPMTGASKTMGTASLSLQNFISP 430 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~dll~~ 430 (609)
+.+..+||+++|++....+.
T Consensus 101 ----~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 101 ----GWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred ----CCCCCeeEEEEEEecCCcee
Confidence 56778999999999866643
No 91
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=93.50 E-value=0.22 Score=44.45 Aligned_cols=73 Identities=16% Similarity=0.302 Sum_probs=55.1
Q ss_pred eccccceeEEEEeec--cccEEEEEEecCCCCccCCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCCCCCCCce
Q 007279 378 SKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPIS 455 (609)
Q Consensus 378 s~s~~k~~~~lqCE~--t~~lvlElr~~~~~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~~ 455 (609)
.++-|++.+.|.|.. ...|.|++..+.. + +...||.+.|++.+++.. .-..+.||.|.. .+.-.
T Consensus 36 ~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-----~-~d~~iG~~~v~L~~l~~~--~~~~~~w~~L~~------~~~G~ 101 (111)
T cd04052 36 NNPSWNASTEFLVTDRRKSRVTVVVKDDRD-----R-HDPVLGSVSISLNDLIDA--TSVGQQWFPLSG------NGQGR 101 (111)
T ss_pred CCCccCCceEEEecCcCCCEEEEEEEECCC-----C-CCCeEEEEEecHHHHHhh--hhccceeEECCC------CCCCE
Confidence 467899999999973 3458888866554 4 678999999999999874 234789999974 23356
Q ss_pred EEEEEeecC
Q 007279 456 LRIAVSFTI 464 (609)
Q Consensus 456 lrva~S~Tp 464 (609)
|++.+.++|
T Consensus 102 i~~~~~~~p 110 (111)
T cd04052 102 IRISALWKP 110 (111)
T ss_pred EEEEEEEec
Confidence 788888776
No 92
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=92.90 E-value=0.62 Score=41.77 Aligned_cols=88 Identities=20% Similarity=0.298 Sum_probs=58.3
Q ss_pred EEEEEEeecCCCCCc---C--CCCceEEEEeccCCCccccccceeeeeeccccceeEEEE-eeccc--cEEEEEEecCCC
Q 007279 335 VFVEIVAVKNLPEDH---K--DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQ-CEATG--ELLFELVSHSTS 406 (609)
Q Consensus 335 v~l~iv~~kNl~~~~---~--~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lq-CE~t~--~lvlElr~~~~~ 406 (609)
+.|.|++++||+... + ...+=||.+... ....+ .+...-+.++-|++.+.|. |++.. .|.|++..+..
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~--~~~~k-T~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~- 78 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG--RRVFR-TSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK- 78 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEEC--CEeEe-eeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC-
Confidence 567889999998531 1 113668988853 22221 1111114567899988886 44433 57788877754
Q ss_pred CccCCCCcccceeEEeecccccCC
Q 007279 407 KIPMTGASKTMGTASLSLQNFISP 430 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~dll~~ 430 (609)
++....||+++|++++|+..
T Consensus 79 ----~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 79 ----FSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred ----CCCCcceEEEEEEHHHHHhh
Confidence 46678999999999999874
No 93
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=92.67 E-value=0.91 Score=41.39 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=59.8
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEeccCCCccccccceeee--eeccccceeEEEEee-c-cccEEEEEEecCCCCcc
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIP 409 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~q~d~~~~~~~~~~i--ss~s~~k~~~~lqCE-~-t~~lvlElr~~~~~~l~ 409 (609)
|.|.|++++|++.. .....+-||+++.... . ...+ +..+ +.++-|++.+.|.|. + ...+.|++.-+..
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~-~~~k-T~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~---- 74 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-K-INDR-DNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDL---- 74 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCe-e-ccce-eeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCC----
Confidence 56778999999754 2234678999986422 1 1111 1112 456799999999997 3 4578888887654
Q ss_pred CCCCcccceeEEeecccccC
Q 007279 410 MTGASKTMGTASLSLQNFIS 429 (609)
Q Consensus 410 ~~~~sk~lG~~sisw~dll~ 429 (609)
+.+...||++.|++.+...
T Consensus 75 -~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 75 -LGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred -CCCCceeEEEEEeeccccc
Confidence 4566899999999987764
No 94
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=92.63 E-value=0.89 Score=42.22 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=67.9
Q ss_pred EEEEEEEeecCCCCCcCCCCceEEEEeccCCCccccccceeee---eeccccceeEEEEee----ccccEEEEEEecCCC
Q 007279 334 EVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCE----ATGELLFELVSHSTS 406 (609)
Q Consensus 334 ev~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE----~t~~lvlElr~~~~~ 406 (609)
++.|.|++++|++.... .+=||..+...+++.- +.+..+ +.++.|++.+.|.=. +...|.|.|.-+-.
T Consensus 15 ~L~V~vikA~~L~~~g~--sDPYVKv~L~~~~k~~--k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr- 89 (118)
T cd08677 15 ELHVNILEAENISVDAG--CECYISGCVSVSEGQK--EAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR- 89 (118)
T ss_pred EEEEEEEEecCCCCCCC--CCeEEEEEEcCCcCcc--EEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC-
Confidence 47788899999994443 6889999976544422 223344 456799998888633 24567888876654
Q ss_pred CccCCCCcccceeEEeecccccCCCCcceEEEEEee
Q 007279 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L 442 (609)
+++..+||.+.++++++-. ....|-|-+|
T Consensus 90 ----fs~~d~IG~v~l~l~~~~~---~~~~~~W~~~ 118 (118)
T cd08677 90 ----FSRHSTLGELRLKLADVSM---MLGAAQWVDL 118 (118)
T ss_pred ----CCCCceEEEEEEccccccC---CccccchhcC
Confidence 6778899999999998743 2456777664
No 95
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=91.21 E-value=3.8 Score=36.80 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=66.9
Q ss_pred EEeecCCCCC-cCCCCceEEEEeccCCC--ccccccceeee---eeccccceeEEEEee--ccccEEEEEEecCCCCccC
Q 007279 339 IVAVKNLPED-HKDKGDLFVFFSKSQPD--IFFNAKQKLTI---LSKSGMKQVASFQCE--ATGELLFELVSHSTSKIPM 410 (609)
Q Consensus 339 iv~~kNl~~~-~~~~~~lFVr~~~~q~d--~~~~~~~~~~i---ss~s~~k~~~~lqCE--~t~~lvlElr~~~~~~l~~ 410 (609)
.+.++||+.. .....+-||+++..... .... ..+..+ +.++.|++.+.|... ....+.||+.-+...- ..
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~-~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~-~~ 83 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVE-IGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS-KD 83 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEE-eccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc-CC
Confidence 4677888744 22235679999966443 1111 122323 456789998888643 4567999998876520 01
Q ss_pred CCCcccceeEEeecccccCCCCcceEEEEEeeccCCC
Q 007279 411 TGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (609)
Q Consensus 411 ~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~ 447 (609)
+++..+||.+.++.++|+.. . ....|++|.+.++
T Consensus 84 ~~~~d~iG~~~i~l~~l~~~-~--~~~~~~~l~~~~~ 117 (120)
T cd04048 84 LSDHDFLGEAECTLGEIVSS-P--GQKLTLPLKGGKG 117 (120)
T ss_pred CCCCcEEEEEEEEHHHHhcC-C--CcEEEEEccCCCc
Confidence 45678899999999999964 2 3456788866543
No 96
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=91.09 E-value=1.3 Score=42.01 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=63.8
Q ss_pred EEEEEEeecCCCCCcC-CCCceEEEEeccCCCccccccceeeee----eccccceeEEEEeec-c--ccEEEEEEecCCC
Q 007279 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTIL----SKSGMKQVASFQCEA-T--GELLFELVSHSTS 406 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~-~~~~lFVr~~~~q~d~~~~~~~~~~is----s~s~~k~~~~lqCE~-t--~~lvlElr~~~~~ 406 (609)
+-|.|+.++||+.... ...+-||..+....++.+.-+ +..+- ..+.|++.+.|.... - -.|++++.-+.+
T Consensus 16 LtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~Kk-KT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~- 93 (135)
T cd08692 16 IQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKK-KTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS- 93 (135)
T ss_pred EEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceee-cCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC-
Confidence 5677899999986422 223569999877555444322 23331 235699999999873 2 255566554432
Q ss_pred CccCCCCcccceeEEeecccccCCCCcceEEEEEeeccC
Q 007279 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~ 445 (609)
.+++..||.+.|..+... .-..|-|-+|..+
T Consensus 94 ----~~~n~~IG~v~lG~~~~~----~~~~~hW~~m~~~ 124 (135)
T cd08692 94 ----VRRKHFLGQVWISSDSSS----SEAVEQWKDTIAN 124 (135)
T ss_pred ----CcCCceEEEEEECCccCC----chhhhhHHHHHhC
Confidence 567889999999886532 1235777777554
No 97
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=88.95 E-value=3.5 Score=39.58 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=60.0
Q ss_pred EEEEEEeecCCCCCcC---------------CCCceEEEEeccCCCccccccceeeeeeccccceeEEEEee---ccccE
Q 007279 335 VFVEIVAVKNLPEDHK---------------DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE---ATGEL 396 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~---------------~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE---~t~~l 396 (609)
++|.|.++++||.... ...+-||++.-. + ...+ .+...=+.++.|++.+.|..- ....+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~-g-~~~k-T~v~~~t~nPvWNE~f~f~v~~p~~~~~l 78 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA-G-QKVK-TSVKKNSYNPEWNEQIVFPEMFPPLCERI 78 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC-C-Eeee-cceEcCCCCCCcceEEEEEeeCCCcCCEE
Confidence 4677899999986421 124678888732 2 1111 111122457899999999842 35689
Q ss_pred EEEEEecCCCCccCCCCcccceeEEeecccccCC
Q 007279 397 LFELVSHSTSKIPMTGASKTMGTASLSLQNFISP 430 (609)
Q Consensus 397 vlElr~~~~~~l~~~~~sk~lG~~sisw~dll~~ 430 (609)
+|||..+.. ..+..+||+++|++.++...
T Consensus 79 ~~~v~D~d~-----~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 79 KIQIRDWDR-----VGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred EEEEEECCC-----CCCCCEEEEEEEeHHHhccC
Confidence 999988766 45678899999999999864
No 98
>PLN02352 phospholipase D epsilon
Probab=86.43 E-value=1.8 Score=51.38 Aligned_cols=104 Identities=13% Similarity=0.243 Sum_probs=77.3
Q ss_pred ceEEEEeccCCCccccccceeeeeeccccceeEEEEee-cc-ccEEEEEEecCCCCccCCCCcccceeEEeecccccCCC
Q 007279 354 DLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-AT-GELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPI 431 (609)
Q Consensus 354 ~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE-~t-~~lvlElr~~~~~~l~~~~~sk~lG~~sisw~dll~~~ 431 (609)
..||.....+. .+ .++ +-..++.|++.++.+|- .. ..|+|-|.- ++.+||++.|+=++++.-.
T Consensus 37 ~~y~tv~~~~~--~v--~rt-~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----------~~~~ig~~~~p~~~~~~g~ 101 (758)
T PLN02352 37 ATYVTIKIGNK--KV--AKT-SHEYDRVWNQTFQILCAHPLDSTITITLKT----------KCSILGRFHIQAHQIVTEA 101 (758)
T ss_pred CceEEEEeCCc--EE--ecC-CCCCCCccccceeEEeeeecCCcEEEEEec----------CCeEEEEEEEEHHHhhCCC
Confidence 77877664421 11 222 22347789999999999 66 689999865 3688999999999999742
Q ss_pred CcceEEEEEeeccCCCCCCCCCceEEEEEeecCCCccchhhccc
Q 007279 432 SKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAPHLLRMV 475 (609)
Q Consensus 432 ~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S~TpPvqApyll~~v 475 (609)
-.+++||++...++.-- ++..||+.+.+||=.+-|+--+-|
T Consensus 102 --~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~g~ 142 (758)
T PLN02352 102 --SFINGFFPLIMENGKPN-PELKLRFMLWFRPAELEPTWCKIL 142 (758)
T ss_pred --cccceEEEcccCCCCCC-CCCEEEEEEEEEEhhhCcchhhcc
Confidence 33999999987665433 347999999999999888766665
No 99
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=86.40 E-value=3.5 Score=53.88 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=77.8
Q ss_pred EEEEEEeecCCCCC-cCCCCceEEEEecc-CCCccccccceeeeeeccccceeEEEEee-cc-cc-EEEEEEecCCCCcc
Q 007279 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKS-QPDIFFNAKQKLTILSKSGMKQVASFQCE-AT-GE-LLFELVSHSTSKIP 409 (609)
Q Consensus 335 v~l~iv~~kNl~~~-~~~~~~lFVr~~~~-q~d~~~~~~~~~~iss~s~~k~~~~lqCE-~t-~~-lvlElr~~~~~~l~ 409 (609)
+.|.+++.+|++.+ +. .+=||+++-. |+.+..+ .+.=+.+|-|++.+.|-++ |. +. +.||+..+..
T Consensus 1982 L~V~V~~a~nl~~~~~~--sdPyv~l~~g~~~~~kTk---vvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~---- 2052 (2102)
T PLN03200 1982 LTVTIKRGNNLKQSMGN--TNAFCKLTLGNGPPRQTK---VVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT---- 2052 (2102)
T ss_pred eEEEEeeccccccccCC--CCCeEEEEECCCCccccc---ccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc----
Confidence 56778999999843 43 6889999855 4333221 2223557899999999999 54 44 8999998873
Q ss_pred CCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCC-CCCCCceEEE
Q 007279 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN-VSSKPISLRI 458 (609)
Q Consensus 410 ~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~-~~~~p~~lrv 458 (609)
|++. .+|.++|+..++... =.+..||.|.+++.. +.++-+++.+
T Consensus 2053 -f~kd-~~G~~~i~l~~vv~~---~~~~~~~~L~~~~~k~G~~~~~~~e~ 2097 (2102)
T PLN03200 2053 -FGKS-SLGKVTIQIDRVVME---GTYSGEYSLNPESNKDGSSRTLEIEF 2097 (2102)
T ss_pred -cCCC-CCceEEEEHHHHhcC---ceeeeeeecCcccccCCCcceEEEEE
Confidence 6555 799999999999964 478999999975332 2234455443
No 100
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=83.48 E-value=9.1 Score=35.66 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=57.5
Q ss_pred EEEEEeecCCCCCcCCCCceEEEEeccC-CCccccccceeee--eeccccceeEEEEeeccccEEEEEEecCCCC--ccC
Q 007279 336 FVEIVAVKNLPEDHKDKGDLFVFFSKSQ-PDIFFNAKQKLTI--LSKSGMKQVASFQCEATGELLFELVSHSTSK--IPM 410 (609)
Q Consensus 336 ~l~iv~~kNl~~~~~~~~~lFVr~~~~q-~d~~~~~~~~~~i--ss~s~~k~~~~lqCE~t~~lvlElr~~~~~~--l~~ 410 (609)
.|.+++++||+. . .+-||-+.... .+.+-..+ +-.+ +.++-|++.+.|+.+++..+.|.+.-....+ +..
T Consensus 2 ~V~V~~A~~L~~-~---sDPYV~l~v~~~~~~~~~~K-Tk~i~~TlnPvWnE~F~i~l~~s~~L~~~v~d~~~~~~~~d~ 76 (118)
T cd08686 2 NVIVHSAQGFKQ-S---ANLYCTLEVDSFGYFVKKAK-TRVCRDTTEPNWNEEFEIELEGSQTLRILCYEKCYSKVKLDG 76 (118)
T ss_pred EEEEEeCCCCCC-C---CCCEEEEEEcCccccceeee-eeeecCCCCCccceEEEEEeCCCCEEEEEEEEcccccccccc
Confidence 567899999962 2 58899996442 22221222 2233 4678999999999998889989888764322 233
Q ss_pred CCCcccceeEEeec
Q 007279 411 TGASKTMGTASLSL 424 (609)
Q Consensus 411 ~~~sk~lG~~sisw 424 (609)
.++-+++|++.|.+
T Consensus 77 ~~~d~~~G~g~i~L 90 (118)
T cd08686 77 EGTDAIMGKGQIQL 90 (118)
T ss_pred cCcccEEEEEEEEE
Confidence 56778998888776
No 101
>COG4278 Uncharacterized conserved protein [Function unknown]
Probab=81.19 E-value=3.3 Score=42.89 Aligned_cols=193 Identities=12% Similarity=0.055 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhhHHHHhhccCCCCCCccccCCcchhHHHHHhccChhhHHHHHHHHhCccCCCCCccc--cccccchhh
Q 007279 51 ALQRAIYRYNACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRLNPVQYKSDCEELYGKNLDNSYVVS--SIQGTCRKE 128 (609)
Q Consensus 51 ~l~rAi~RY~~~wl~Lla~~~~~~~~~~~lvPPLDV~~vWH~H~LnP~~Y~~dC~~~~gr~id~~~v~~--~~~~~~~~~ 128 (609)
..++-+.-|.+| +-|.-..+ ..+..|-=-||.+||-|.|.-..|.+.|.+..|+.++|+.... +.++.....
T Consensus 59 ~a~qve~e~R~F-~~L~iaag-----k~v~tpS~~VD~~WH~lIlhTReye~fcs~vlg~plhh~p~l~~~~~nq~~~~~ 132 (269)
T COG4278 59 LAEQVEKELRRF-VLLTIAAG-----KRVFTPSGVVDLYWHELILHTREYEKFCSSVLGIPLHHNPLLAKLLNNQDNSFG 132 (269)
T ss_pred HHHHHHHHHHHH-hhhhhhcC-----ccccChhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccChhhhcccCCCchhHH
Confidence 455556666663 32322222 1245577779999999999999999999999999998863222 223323333
Q ss_pred hHHHhhhhCCCCCccc------ccccccccc-----ccccccccccchhchHHHHHHhhhh-HHHHhccCCCCcHHHHHH
Q 007279 129 TEEIWNRLYPEEPYEL------DLAKISSED-----FSAELSGLEKFTKYDLVSAVKRQSP-FFYQVSRSHFNNDVFLEE 196 (609)
Q Consensus 129 s~~~W~~~yP~epfd~------d~~~~~~~~-----i~~~~~~~~~~~s~DLv~AV~RQ~~-F~~q~~~P~~~d~~~L~r 196 (609)
-++.|......|--++ .+...+..+ +..+..-...-...|++.-|.-|.- .+..+. ..+.....+
T Consensus 133 lr~tlk~~~r~e~I~P~~~l~s~p~drl~r~Llf~rldakl~i~k~~~t~~~F~~vp~~c~~~~~~~~---r~d~~~av~ 209 (269)
T COG4278 133 LRRTLKPACRNEGILPKKALESLPDDRLPRVLLFARLDAKLAIEKGLHTIDEFKYVPEQCAPLIAHFG---RQDGNIAVR 209 (269)
T ss_pred HHHhcchhhhccccCchhhhhcCcccccccchhhhhhhhhhhhhcccchhhHHhhcccccccchhhcc---ccCCceEEE
Confidence 3444544433222111 000000000 0000000000001222322222210 000000 112223345
Q ss_pred HHHHHHHhHHhhhhccccccccccCCchhHHHHHhhccCChhhHHHHHHhHhCccccCC
Q 007279 197 AVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDMSKTLGKVLEHD 255 (609)
Q Consensus 197 Ai~RYkrFL~L~~~~p~~~~~~~LVPTlDIDLvWHTHQL~p~~Y~~Dc~~i~Gr~IdHd 255 (609)
.+...++.+.....+..+ .+=.|.-+.|.--|--..+.-.|-.+|..-+|.+.+|.
T Consensus 210 c~a~f~~~~sgcgS~gg~---~~gs~~g~gd~~~H~~g~~~g~dgs~CgggcGg~gg~~ 265 (269)
T COG4278 210 CEAEFKKWMSGCGSYGGK---NFGSPSGVGDMYFHGCGGHTGGDGSFCGGGCGGFGGDP 265 (269)
T ss_pred ehhhhcCccccccccccC---CcCCCcccccccccccccCcCCCccccCCCCCCCCCCC
Confidence 555555556555555443 34467777777777777777777777766677766543
No 102
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.22 E-value=8.3 Score=42.99 Aligned_cols=103 Identities=19% Similarity=0.312 Sum_probs=68.2
Q ss_pred EEEEEEeecCCCCCcC-CCCceEEEEeccCCCccccccceeee---eeccccceeEEEEeecc--c--cEEEEEEecCCC
Q 007279 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEAT--G--ELLFELVSHSTS 406 (609)
Q Consensus 335 v~l~iv~~kNl~~~~~-~~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE~t--~--~lvlElr~~~~~ 406 (609)
+.|.|+.+|||+.... ...+-||..+....++.++ +.+..+ +.++.|+..+.|.+-+. . .++|++.-+..
T Consensus 300 ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~-kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~- 377 (421)
T KOG1028|consen 300 LTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLS-KKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDT- 377 (421)
T ss_pred EEEEEEEecCCCcccCCCCCCccEEEEEecCCceee-eeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEccc-
Confidence 6777899999984422 1244799999887775443 334444 34458899999977643 2 57777777666
Q ss_pred CccCCCCcccceeEEee----------cccccCCCCcceEEEEEeecc
Q 007279 407 KIPMTGASKTMGTASLS----------LQNFISPISKLAVEQWFDLVP 444 (609)
Q Consensus 407 ~l~~~~~sk~lG~~sis----------w~dll~~~~~Ls~E~w~~L~~ 444 (609)
++....||...+. |++++.. |..-++.|-.|.+
T Consensus 378 ----~~~~~~iG~~~lG~~~~~~~~~hW~~m~~~-p~~pv~~wh~l~~ 420 (421)
T KOG1028|consen 378 ----LGSNDLIGRCILGSDSTGEEVRHWQEMLNS-PRKPVAQWHSLRS 420 (421)
T ss_pred ----ccccceeeEEEecCCCCchHHHHHHHHHhC-ccCceeeeEeccc
Confidence 4445577766654 6677775 5777777776543
No 103
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.08 E-value=87 Score=35.09 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=78.2
Q ss_pred EEEEEEEEeecCCCCCcCC-CCceEEEEeccCCCccccccceeee---eeccccceeEEEEee----ccccEEEEEEecC
Q 007279 333 VEVFVEIVAVKNLPEDHKD-KGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCE----ATGELLFELVSHS 404 (609)
Q Consensus 333 ~ev~l~iv~~kNl~~~~~~-~~~lFVr~~~~q~d~~~~~~~~~~i---ss~s~~k~~~~lqCE----~t~~lvlElr~~~ 404 (609)
.++.|-|++++|+|...++ ..+=||+.+.+ ||+. -+....+ +.++-|++.+.|+=. ++..|.|-+.-..
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~ll-Pdk~--~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLL-PDKK--GKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred CEEEEEEEEecCCCcccCCCCCCCeeEEEEc-CCCC--CcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 3467778999999976532 26889999966 6652 2223333 344678998888822 3557777765544
Q ss_pred CCCccCCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCCCCCCCceEEEEEeecC
Q 007279 405 TSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI 464 (609)
Q Consensus 405 ~~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S~Tp 464 (609)
. |..-..||.+++++.++-.. .+.+.|.+|.+........+=.|=++++--|
T Consensus 244 r-----fsr~~~iGev~~~l~~~~~~---~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p 295 (421)
T KOG1028|consen 244 R-----FSRHDFIGEVILPLGEVDLL---STTLFWKDLQPSSTDSEELAGELLLSLCYLP 295 (421)
T ss_pred C-----cccccEEEEEEecCcccccc---ccceeeeccccccCCcccccceEEEEEEeec
Confidence 4 66778899999998777654 2388999999874433322223444444333
No 104
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=37.58 E-value=3.2e+02 Score=24.94 Aligned_cols=116 Identities=21% Similarity=0.323 Sum_probs=67.7
Q ss_pred EEEEEEEEeecCCCCCcCCCCceEEEEeccCCCcccc-cc-ceeeee-eccccceeEEEEeec----------cccEEEE
Q 007279 333 VEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFN-AK-QKLTIL-SKSGMKQVASFQCEA----------TGELLFE 399 (609)
Q Consensus 333 ~ev~l~iv~~kNl~~~~~~~~~lFVr~~~~q~d~~~~-~~-~~~~is-s~s~~k~~~~lqCE~----------t~~lvlE 399 (609)
.++.|.|..+.|+|... ..+||....- +.... .. ....+. ..-.|++.+.+.|-= .+.+.|.
T Consensus 7 f~~~l~i~~l~~~p~~~---~~v~v~wkr~--~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 7 FQFDLTIHELENLPSSN---GKVFVKWKRG--DKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred EEEEEEEEEeECcCCCC---CEEEEEEEEC--CCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 57889999999998733 6899998632 32110 00 111111 122678777777761 1256666
Q ss_pred EEecCCCCccCCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCCCCCCCceEEEEEeec
Q 007279 400 LVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFT 463 (609)
Q Consensus 400 lr~~~~~~l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~~~p~~lrva~S~T 463 (609)
|....++ -++ +.+|++.|.+.++.... .=....-+.|... ....-.|+|-+++.
T Consensus 82 v~~~~~~----~~k-~~lG~~~inLaey~~~~-~~~~~~~~~l~~~----~~~~a~L~isi~~~ 135 (143)
T PF10358_consen 82 VFEVDGS----GKK-KVLGKVSINLAEYANED-EEPITVRLLLKKC----KKSNATLSISISLS 135 (143)
T ss_pred EEEecCC----Ccc-ceEEEEEEEHHHhhCcC-CCcEEEEEeCccC----CCCCcEEEEEEEEE
Confidence 6665321 122 78999999999999853 2234444565554 12234566666644
No 105
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=27.04 E-value=62 Score=38.58 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=70.6
Q ss_pred EEEEEEEeecCCCCCcC-CCCceEEEEeccCCCccccccceeeeeeccccceeEEEEee-c-c-ccEEEEEEecCCCCcc
Q 007279 334 EVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-T-GELLFELVSHSTSKIP 409 (609)
Q Consensus 334 ev~l~iv~~kNl~~~~~-~~~~lFVr~~~~q~d~~~~~~~~~~iss~s~~k~~~~lqCE-~-t-~~lvlElr~~~~~~l~ 409 (609)
.+.|.|+++||||+... .+.+-|-.....|--.+ . ...++=+=.+.|-. -|||| | | .-|-|=+.-+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~-R-T~tv~ksL~PF~gE--e~~~~iP~~F~~l~fYv~D~d----- 76 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVC-R-TATVEKSLCPFFGE--EFYFEIPRTFRYLSFYVWDRD----- 76 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhh-h-hhhhhhhcCCcccc--ceEEecCcceeeEEEEEeccc-----
Confidence 47899999999997733 34455655443332211 0 00111122234443 57888 4 3 45555544322
Q ss_pred CCCCcccceeEEeecccccCCCCcceEEEEEeeccCCCCCC-CCCceEEEEEeecCCCcc
Q 007279 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVS-SKPISLRIAVSFTIPTLA 468 (609)
Q Consensus 410 ~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~~~~~~~~-~~p~~lrva~S~TpPvqA 468 (609)
++.-++||++.|+=.||..- | -.+.||.|.|-....- .--|.|++++ |+-.|+
T Consensus 77 -~~~D~~IGKvai~re~l~~~-~--~~d~W~~L~~VD~dsEVQG~v~l~l~~--~e~~~~ 130 (800)
T KOG2059|consen 77 -LKRDDIIGKVAIKREDLHMY-P--GKDTWFSLQPVDPDSEVQGKVHLELAL--TEAIQS 130 (800)
T ss_pred -cccccccceeeeeHHHHhhC-C--CCccceeccccCCChhhceeEEEEEEe--ccccCC
Confidence 57889999999999999974 5 7899999988644322 2244555544 444443
No 106
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=26.37 E-value=4.8e+02 Score=24.74 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=20.8
Q ss_pred EEEEEEEeecCCCCC-----cCCCCceEEEEecc
Q 007279 334 EVFVEIVAVKNLPED-----HKDKGDLFVFFSKS 362 (609)
Q Consensus 334 ev~l~iv~~kNl~~~-----~~~~~~lFVr~~~~ 362 (609)
|+.|-|..++|++.. .++++++||.....
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~ 34 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLD 34 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEc
Confidence 567778999997643 22357899998854
No 107
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.11 E-value=1.3e+02 Score=34.49 Aligned_cols=99 Identities=24% Similarity=0.360 Sum_probs=62.5
Q ss_pred EEEEEEeecCC-CCCcCCCCceEEEEeccCCCcccccc-ceeee--eeccccceeEEEEeec---cccEEEEEEecCCCC
Q 007279 335 VFVEIVAVKNL-PEDHKDKGDLFVFFSKSQPDIFFNAK-QKLTI--LSKSGMKQVASFQCEA---TGELLFELVSHSTSK 407 (609)
Q Consensus 335 v~l~iv~~kNl-~~~~~~~~~lFVr~~~~q~d~~~~~~-~~~~i--ss~s~~k~~~~lqCE~---t~~lvlElr~~~~~~ 407 (609)
+-|.|.+++|| |-+.+.-++=||-+... ||..-+.+ ..-+| +-++.|+.++.|+=.| .+.|.+|+-----
T Consensus 182 l~v~i~ea~NLiPMDpNGlSDPYvk~kli-PD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr-- 258 (683)
T KOG0696|consen 182 LTVTIKEAKNLIPMDPNGLSDPYVKLKLI-PDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR-- 258 (683)
T ss_pred EEEEehhhccccccCCCCCCCcceeEEec-cCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc--
Confidence 45678999996 43344345678887643 45221111 12223 4467999999998885 4689999742111
Q ss_pred ccCCCCcccceeEEeecccccCCCCcceEEEEEeec
Q 007279 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (609)
Q Consensus 408 l~~~~~sk~lG~~sisw~dll~~~~~Ls~E~w~~L~ 443 (609)
....-.+|+.||..++|+++ .+.-|+-|-
T Consensus 259 ---TsRNDFMGslSFgisEl~K~----p~~GWyKlL 287 (683)
T KOG0696|consen 259 ---TSRNDFMGSLSFGISELQKA----PVDGWYKLL 287 (683)
T ss_pred ---cccccccceecccHHHHhhc----chhhHHHHh
Confidence 12234589999999999975 356777663
Done!