BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007280
(609 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 516 bits (1328), Expect = e-146, Method: Compositional matrix adjust.
Identities = 252/419 (60%), Positives = 318/419 (75%), Gaps = 14/419 (3%)
Query: 133 VETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTG 192
VE +G N PP + +F+++++GE + NI +Y +PTPVQ+HAIPI RDLMACAQTG
Sbjct: 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 62
Query: 193 SGKTAAFCFPIISGI--------MREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244
SGKTAAF PI+S I +R G R YP++L+LAPTREL+ QI+ EA+
Sbjct: 63 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 122
Query: 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304
KFSY++ V+ V YGGA I QQ+R+LERG +LVATPGRLVD++ER ++ L +YL LD
Sbjct: 123 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 182
Query: 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR 364
EADRMLDMGFEPQIR+IV+Q MPP G+R TM+FSATFPKEIQ LA DFL YIFLAVGR
Sbjct: 183 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242
Query: 365 VGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL 424
VGS+++ I Q+V +V ESDKRS L+DLL+A GK +LTLVFVETKKGAD+LE +L
Sbjct: 243 VGSTSENITQKVVWVEESDKRSFLLDLLNAT------GKDSLTLVFVETKKGADSLEDFL 296
Query: 425 YMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPND 484
Y G+ T+IHGDR+Q++RE AL F+SGK+PILVAT VAARGLDI +V HV+NFDLP+D
Sbjct: 297 YHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSD 356
Query: 485 IDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVPAWLNRYASRANY 543
I++YVHRIGRTGR G GLAT+FFNE N+++ + L +L+ EA QEVP+WL A +Y
Sbjct: 357 IEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHY 415
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/415 (45%), Positives = 281/415 (67%), Gaps = 16/415 (3%)
Query: 121 TGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISI 180
+GI+F Y +IPV+ +G +VP + F DL + + N+ + Y PTP+Q+ +IP+
Sbjct: 32 SGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVIS 91
Query: 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240
GRDLMACAQTGSGKTAAF PI+S ++ + P P +I++PTREL+ QI
Sbjct: 92 SGRDLMACAQTGSGKTAAFLLPILSKLLED-----PHELELGRPQVVIVSPTRELAIQIF 146
Query: 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRY 300
EA+KF++++ +K+ + YGG Q + RG +++ATPGRL+D ++R ++ + R+
Sbjct: 147 NEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRF 206
Query: 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFL 360
+ LDEADRMLDMGF +R+I+ + M P QT++FSATFP+EIQR+A +FL NY+F+
Sbjct: 207 VVLDEADRMLDMGFSEDMRRIMTHVTMRPE--HQTLMFSATFPEEIQRMAGEFLKNYVFV 264
Query: 361 AVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADAL 420
A+G VG + + Q + V++ KRS L+++L Q A+G T+VFVETK+GAD L
Sbjct: 265 AIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ-ADG-------TIVFVETKRGADFL 316
Query: 421 EHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFD 480
+L FP T+IHGDR Q +RE ALR FK+G +L+AT VA+RGLDI ++ HV+N+D
Sbjct: 317 ASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYD 376
Query: 481 LPNDIDDYVHRIGRTGRAGKSGLATAFFN-ENNMSLARPLTELMQEANQEVPAWL 534
+P+ IDDYVHRIGRTGR G +G AT+FF+ E + ++A L ++++ + Q VP +L
Sbjct: 377 MPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFL 431
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 278 bits (711), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 136/254 (53%), Positives = 183/254 (72%), Gaps = 3/254 (1%)
Query: 125 FDAYEDIPVETSGENVPP--AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG 182
FD Y+ IPV +G + + F E+ L + NI Y +PTP+Q++AIP +
Sbjct: 1 FDKYDSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEH 60
Query: 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242
RD+MACAQTGSGKTAAF PII+ ++ + Q+ R S+T YP LILAPTREL+ QI E
Sbjct: 61 RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ-RYSKTAYPKCLILAPTRELAIQILSE 119
Query: 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 302
++KFS T ++ V YGGA + Q+RE++ G +LVATPGRLVD +E+ ++SL+ +Y+
Sbjct: 120 SQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179
Query: 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAV 362
LDEADRMLDMGFEPQIRKI+++ +MP RQT++FSATFPKEIQ+LA+DFL NYIF+ V
Sbjct: 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239
Query: 363 GRVGSSTDLIVQRV 376
GRVGS++D I Q +
Sbjct: 240 GRVGSTSDSIKQEI 253
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/178 (60%), Positives = 139/178 (78%), Gaps = 6/178 (3%)
Query: 366 GSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLY 425
GS+++ I Q+V +V ESDKRS L+DLL+A GK +LTLVFVETKKGAD+LE +LY
Sbjct: 14 GSTSENITQKVVWVEESDKRSFLLDLLNAT------GKDSLTLVFVETKKGADSLEDFLY 67
Query: 426 MNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDI 485
G+ T+IHGDR+Q++RE AL F+SGK+PILVAT VAARGLDI +V HV+NFDLP+DI
Sbjct: 68 HEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDI 127
Query: 486 DDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVPAWLNRYASRANY 543
++YVHRIGRTGR G GLAT+FFNE N+++ + L +L+ EA QEVP+WL A +Y
Sbjct: 128 EEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHY 185
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 140/421 (33%), Positives = 222/421 (52%), Gaps = 38/421 (9%)
Query: 115 VAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRH 174
+ EE+ T + F+ E++ +V P TF + L E L I + KP+ +Q+
Sbjct: 17 LKEEDMTKVEFETSEEV-------DVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQR 66
Query: 175 AIPISIGGRDLMACAQTGSGKTAAFCFPIISGI---MREQYVQRPRGSRTVYPLALILAP 231
AI I GRD++A +Q+G+GKTA F ++ + +RE ALILAP
Sbjct: 67 AIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ-------------ALILAP 113
Query: 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 291
TREL+ QI V+ GG + + +R+L+ G ++ TPGR+ D++ R
Sbjct: 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR 173
Query: 292 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351
+ + I+ L LDEAD ML+ GF+ QI + + + PP Q +L SAT P EI + +
Sbjct: 174 SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL---PPAT-QVVLISATLPHEILEMTN 229
Query: 352 DFLANYIFLAVGRVGSSTDLIVQR-VEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVF 410
F+ + I + V R + + I Q V E K L DL QA+ +F
Sbjct: 230 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT-----QAV--IF 282
Query: 411 VETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDI 470
TK+ D L + F +++HGD Q+ERE ++ F+SG + +L++TDV ARGLD+
Sbjct: 283 CNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 342
Query: 471 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEV 530
P V+ ++N+DLPN+ + Y+HRIGR+GR G+ G+A F +++ + R + + E+
Sbjct: 343 PQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM 402
Query: 531 P 531
P
Sbjct: 403 P 403
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/421 (33%), Positives = 222/421 (52%), Gaps = 38/421 (9%)
Query: 115 VAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRH 174
+ EE+ T + F+ E++ +V P TF + L E L I + KP+ +Q+
Sbjct: 18 LKEEDMTKVEFETSEEV-------DVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQR 67
Query: 175 AIPISIGGRDLMACAQTGSGKTAAFCFPIISGI---MREQYVQRPRGSRTVYPLALILAP 231
AI I GRD++A +Q+G+GKTA F ++ + +RE ALILAP
Sbjct: 68 AIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ-------------ALILAP 114
Query: 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 291
TREL+ QI V+ GG + + +R+L+ G ++ TPGR+ D++ R
Sbjct: 115 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR 174
Query: 292 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351
+ + I+ L LDEAD ML+ GF+ QI + + + PP Q +L SAT P EI + +
Sbjct: 175 SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL---PPAT-QVVLISATLPHEILEMTN 230
Query: 352 DFLANYIFLAVGRVGSSTDLIVQR-VEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVF 410
F+ + I + V R + + I Q V E K L DL QA+ +F
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT-----QAV--IF 283
Query: 411 VETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDI 470
TK+ D L + F +++HGD Q+ERE ++ F+SG + +L++TDV ARGLD+
Sbjct: 284 CNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 343
Query: 471 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEV 530
P V+ ++N+DLPN+ + Y+HRIGR+GR G+ G+A F +++ + R + + E+
Sbjct: 344 PQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM 403
Query: 531 P 531
P
Sbjct: 404 P 404
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/421 (33%), Positives = 222/421 (52%), Gaps = 38/421 (9%)
Query: 115 VAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRH 174
+ EE+ T + F+ E++ +V P TF + L E L I + KP+ +Q+
Sbjct: 18 LKEEDMTKVEFETSEEV-------DVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQR 67
Query: 175 AIPISIGGRDLMACAQTGSGKTAAFCFPIISGI---MREQYVQRPRGSRTVYPLALILAP 231
AI I GRD++A +Q+G+GKTA F ++ + +RE ALILAP
Sbjct: 68 AIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ-------------ALILAP 114
Query: 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 291
TREL+ QI V+ GG + + +R+L+ G ++ TPGR+ D++ R
Sbjct: 115 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR 174
Query: 292 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351
+ + I+ L LDEAD ML+ GF+ QI + + + PP Q +L SAT P EI + +
Sbjct: 175 SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL---PPAT-QVVLISATLPHEILEMTN 230
Query: 352 DFLANYIFLAVGRVGSSTDLIVQR-VEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVF 410
F+ + I + V R + + I Q V E K L DL QA+ +F
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT-----QAV--IF 283
Query: 411 VETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDI 470
TK+ D L + F +++HGD Q+ERE ++ F+SG + +L++TDV ARGLD+
Sbjct: 284 CNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 343
Query: 471 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEV 530
P V+ ++N+DLPN+ + Y+HRIGR+GR G+ G+A F +++ + R + + E+
Sbjct: 344 PQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM 403
Query: 531 P 531
P
Sbjct: 404 P 404
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 215 bits (547), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 200/365 (54%), Gaps = 29/365 (7%)
Query: 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGR-DLMACAQTGSGKTAAFCFPII 204
F E++L + + IR + KPT +Q IP+ + +++A A+TGSGKTA+F P+I
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 205 SGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPIN 264
+ ++ A+IL PTREL+ Q+ E + +K+ YGG I
Sbjct: 67 ELVNENNGIE-----------AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIY 115
Query: 265 QQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324
Q++ L + +I+V TPGR++D + R ++L+ ++Y LDEAD L+ GF + KI+
Sbjct: 116 PQIKAL-KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNA 174
Query: 325 MDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDK 384
+ ++ +LFSAT P+EI LA + +Y F+ ++ ++ I Q V+E+++
Sbjct: 175 CNKD----KRILLFSATXPREILNLAKKYXGDYSFIK-AKINAN---IEQSYVEVNENER 226
Query: 385 RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERE 444
L LL K+ LVF +TK+ L L GF A IHGD +Q +RE
Sbjct: 227 FEALCRLLK--------NKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQRE 278
Query: 445 LALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLA 504
+R FK K IL+ATDV +RG+D+ + V+N+ LP + + Y HRIGRTGRAGK G A
Sbjct: 279 KVIRLFKQKKIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKA 338
Query: 505 TAFFN 509
+ N
Sbjct: 339 ISIIN 343
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/406 (34%), Positives = 216/406 (53%), Gaps = 32/406 (7%)
Query: 131 IPVETSGE-NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACA 189
+ ETS E +V P TF + L E L I + KP+ +Q+ AI I GRD++A +
Sbjct: 4 VEFETSEEVDVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQS 60
Query: 190 QTGSGKTAAFCFPIISGI---MREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246
Q+G+GKTA F ++ + +RE ALILAPTREL+ QI
Sbjct: 61 QSGTGKTATFSISVLQCLDIQVRETQ-------------ALILAPTRELAVQIQKGLLAL 107
Query: 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEA 306
V+ GG + + +R+L+ G ++ TPGR+ D++ R + + I+ L LDEA
Sbjct: 108 GDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 167
Query: 307 DRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVG 366
D ML+ GF+ QI + + + PP Q +L SAT P EI + + F+ + I + V R
Sbjct: 168 DEMLNKGFKEQIYDVYRYL---PPAT-QVVLISATLPHEILEMTNKFMTDPIRILVKRDE 223
Query: 367 SSTDLIVQR-VEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLY 425
+ + I Q V E K L DL QA+ +F TK+ D L +
Sbjct: 224 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT-----QAV--IFCNTKRKVDWLTEKMR 276
Query: 426 MNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDI 485
F +++HGD Q+ERE ++ F+SG + +L++TDV ARGLD+P V+ ++N+DLPN+
Sbjct: 277 EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNR 336
Query: 486 DDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVP 531
+ Y+HRIGR+GR G+ G+A F +++ + R + + E+P
Sbjct: 337 ELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 382
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/390 (33%), Positives = 208/390 (53%), Gaps = 28/390 (7%)
Query: 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIIS 205
TF + L E L I + KP+ +Q+ AI I GRD++A +Q+G+GKTA F ++
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 206 GI---MREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262
+ +RE ALILAPTREL+ Q+ V+ GG
Sbjct: 62 CLDIQVRETQ-------------ALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTN 108
Query: 263 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322
+ + +R+L+ G ++ TPGR+ D++ R + + I+ L LDEAD ML+ GF+ QI +
Sbjct: 109 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 168
Query: 323 QQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQR-VEFVHE 381
+ + PP Q +L SAT P EI + + F+ + I + V R + + I Q V E
Sbjct: 169 RYL---PPAT-QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE 224
Query: 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQ 441
K L DL QA+ +F TK+ D L + F +++HGD Q+
Sbjct: 225 EWKFDTLCDLYDTLTIT-----QAV--IFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 277
Query: 442 ERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 501
ERE ++ F+SG + +L++TDV ARGLD+P V+ ++N+DLPN+ + Y+HRIGR+GR G+
Sbjct: 278 ERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 337
Query: 502 GLATAFFNENNMSLARPLTELMQEANQEVP 531
G+A F +++ + R + + E+P
Sbjct: 338 GVAVNFVKNDDIRVLRDIEQYYSTQIDEMP 367
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/390 (33%), Positives = 208/390 (53%), Gaps = 28/390 (7%)
Query: 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIIS 205
TF + L E L I + KP+ +Q+ AI I GRD++A +Q+G+GKTA F ++
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 206 GI---MREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262
+ +RE ALILAPTREL+ Q+ V+ GG
Sbjct: 62 CLDIQVRETQ-------------ALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTN 108
Query: 263 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322
+ + +R+L+ G ++ TPGR+ D++ R + + I+ L LDEAD ML+ GF+ QI +
Sbjct: 109 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 168
Query: 323 QQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQR-VEFVHE 381
+ + PP Q +L SAT P E+ + + F+ + I + V R + + I Q V E
Sbjct: 169 RYL---PPAT-QVVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE 224
Query: 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQ 441
K L DL QA+ +F TK+ D L + F +++HGD Q+
Sbjct: 225 EWKFDTLCDLYDTLTIT-----QAV--IFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 277
Query: 442 ERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 501
ERE ++ F+SG + +L++TDV ARGLD+P V+ ++N+DLPN+ + Y+HRIGR+GR G+
Sbjct: 278 ERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 337
Query: 502 GLATAFFNENNMSLARPLTELMQEANQEVP 531
G+A F +++ + R + + E+P
Sbjct: 338 GVAVNFVKNDDIRVLRDIEQYYSTQIDEMP 367
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 198 bits (503), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 145/231 (62%), Gaps = 9/231 (3%)
Query: 133 VETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTG 192
+ G N P V F E + + I R + +PT +Q P+++ G D++ AQTG
Sbjct: 31 ITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTG 90
Query: 193 SGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGV 252
SGKT ++ P I I + +++R G P+ L+LAPTREL+ Q+ A ++ +
Sbjct: 91 SGKTLSYLLPAIVHINHQPFLERGDG-----PICLVLAPTRELAQQVQQVAAEYCRACRL 145
Query: 253 KVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM 312
K YGGAP Q+R+LERGV+I +ATPGRL+D LE + +L+ YL LDEADRMLDM
Sbjct: 146 KSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDM 205
Query: 313 GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363
GFEPQIRKIV Q+ RQT+++SAT+PKE+++LA DFL +YI + +G
Sbjct: 206 GFEPQIRKIVDQIRPD----RQTLMWSATWPKEVRQLAEDFLKDYIHINIG 252
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 146/231 (63%), Gaps = 9/231 (3%)
Query: 133 VETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTG 192
+ G N P V F E + + I R + +PT +Q P+++ G D++ AQTG
Sbjct: 17 ITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTG 76
Query: 193 SGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGV 252
SGKT ++ P I I + +++R G P+ L+LAPTREL+ Q+ A ++ +
Sbjct: 77 SGKTLSYLLPAIVHINHQPFLERGDG-----PICLVLAPTRELAQQVQQVAAEYCRACRL 131
Query: 253 KVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM 312
K YGGAP Q+R+LERGV+I +ATPGRL+D LE + +L+ YL LDEADRMLDM
Sbjct: 132 KSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDM 191
Query: 313 GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363
GFEPQIRKIV Q+ P RQT+++SAT+PKE+++LA DFL +YI + +G
Sbjct: 192 GFEPQIRKIVDQIR---PD-RQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/375 (34%), Positives = 189/375 (50%), Gaps = 38/375 (10%)
Query: 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQ 211
+ E + IR + T VQ IP+ + G++++ A+TGSGKTAA+ PI+ M+
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMK-- 58
Query: 212 YVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE 271
+L++ PTREL+ Q+ + KV YGG P Q+ +
Sbjct: 59 --------------SLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV- 103
Query: 272 RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPG 331
R DI+VATPGRL+DL + + L + +DEAD M +MGF I+ I+ Q
Sbjct: 104 RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQ----TSN 159
Query: 332 MRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDL 391
+ T LFSAT P+EI+++ DF+ NY + + L +FVH D +
Sbjct: 160 RKITGLFSATIPEEIRKVVKDFITNY-----EEIEACIGLANVEHKFVHVKDDWRSKVQA 214
Query: 392 LHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFK 451
L GV +VFV T+ L L+ N A + GD Q R + +F+
Sbjct: 215 LRENKDKGV-------IVFVRTRNRVAKLVR-LFDN---AIELRGDLPQSVRNRNIDAFR 263
Query: 452 SGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEN 511
G+ +L+ TDVA+RGLDIP V V+NFD P D+ Y+HRIGRTGR G+ G A F N
Sbjct: 264 EGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI-LN 322
Query: 512 NMSLARPLTELMQEA 526
L + + ++ Q+A
Sbjct: 323 EYWLEKEVKKVSQKA 337
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 127/392 (32%), Positives = 192/392 (48%), Gaps = 33/392 (8%)
Query: 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPII 204
NTF + L L + I + KP+P+Q AIP++I GRD++A A+ G+GKTAAF P +
Sbjct: 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 80
Query: 205 SGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPIN 264
+ +P+ ++ ALI+ PTREL+ Q + G+ +V GG +
Sbjct: 81 EKV-------KPKLNKIQ---ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLR 130
Query: 265 QQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324
+ L V ILV TPGR++DL R L +DEAD+ML F + I++Q
Sbjct: 131 DDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDF----KTIIEQ 186
Query: 325 MDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDL----IVQRVEFVH 380
+ P Q++LFSATFP ++ +F+ ++ + +L I Q FV
Sbjct: 187 ILSFLPPTHQSLLFSATFPLTVK----EFMVKHLHKPY-EINLMEELTLKGITQYYAFVE 241
Query: 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ 440
E K H ++ L +++ QA+ +F + + L + G+ H Q
Sbjct: 242 ERQKL-HCLNTLFSKL----QINQAI--IFCNSTNRVELLAKKITDLGYSCYYSHARMKQ 294
Query: 441 QERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK 500
QER F+ GK LV +D+ RG+DI V V+NFD P + Y+HRIGR+GR G
Sbjct: 295 QERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGH 354
Query: 501 SGLATAFFNENNMSLARPLTELMQEANQEVPA 532
GLA N N+ L ++ QE E+ A
Sbjct: 355 LGLAINLINWNDRF---NLYKIEQELGTEIAA 383
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 23/395 (5%)
Query: 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198
N V++F +++L E+L I + KP+ +Q+ AI I G D++A AQ+G+GKTA
Sbjct: 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTAT 93
Query: 199 FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258
F I+ I + + AL+LAPTREL+ QI G
Sbjct: 94 FAISILQQIELDLKATQ----------ALVLAPTRELAQQIQKVVMALGDYMGASCHACI 143
Query: 259 GGAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQ 317
GG + ++++L+ I+V TPGR+ D+L R +S + I+ LDEAD ML GF+ Q
Sbjct: 144 GGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQ 203
Query: 318 IRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ-RV 376
I I Q+++ Q +L SAT P ++ + F+ + I + V + + + I Q +
Sbjct: 204 IYDIFQKLN----SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYI 259
Query: 377 EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHG 436
E K L DL QA+ +F+ T++ D L ++ F + +HG
Sbjct: 260 NVEREEWKLDTLCDLYETLTIT-----QAV--IFINTRRKVDWLTEKMHARDFTVSAMHG 312
Query: 437 DRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG 496
D Q+ER++ +R F+SG + +L+ TD+ ARG+D+ V+ V+N+DLP + ++Y+HRIGR G
Sbjct: 313 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 372
Query: 497 RAGKSGLATAFFNENNMSLARPLTELMQEANQEVP 531
R G+ G+A E + R + + +E+P
Sbjct: 373 RFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMP 407
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 23/395 (5%)
Query: 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198
N V++F +++L E+L I + KP+ +Q+ AI I G D++A AQ+G+GKTA
Sbjct: 8 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTAT 67
Query: 199 FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258
F I+ I + + AL+LAPTREL+ QI G
Sbjct: 68 FAISILQQIELDLKATQ----------ALVLAPTRELAQQIQKVVMALGDYMGASCHACI 117
Query: 259 GGAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQ 317
GG + ++++L+ I+V TPGR+ D+L R +S + I+ LDEAD ML GF+ Q
Sbjct: 118 GGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQ 177
Query: 318 IRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ-RV 376
I I Q+++ Q +L SAT P ++ + F+ + I + V + + + I Q +
Sbjct: 178 IYDIFQKLNSNT----QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYI 233
Query: 377 EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHG 436
E K L DL QA+ +F+ T++ D L ++ F + +HG
Sbjct: 234 NVEREEWKLDTLCDLYETLTIT-----QAV--IFINTRRKVDWLTEKMHARDFTVSAMHG 286
Query: 437 DRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG 496
D Q+ER++ +R F+SG + +L+ TD+ ARG+D+ V+ V+N+DLP + ++Y+HRIGR G
Sbjct: 287 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 346
Query: 497 RAGKSGLATAFFNENNMSLARPLTELMQEANQEVP 531
R G+ G+A E + R + + +E+P
Sbjct: 347 RFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMP 381
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 195/380 (51%), Gaps = 33/380 (8%)
Query: 141 PPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFC 200
P ++ F + L L I C + P+ VQ IP +I G D++ A++G GKTA F
Sbjct: 3 PGHMSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 62
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS-YQTGVKVVVAYG 259
+ Q ++ G +V L++ TREL+ QI E ++FS Y VKV V +G
Sbjct: 63 LATL------QQLEPVTGQVSV----LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFG 112
Query: 260 GAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQI 318
G I + L++ I+V TPGR++ L ++L+ I++ LDEAD+ML+ + +
Sbjct: 113 GLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEADKMLE---QLDM 169
Query: 319 RKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN--YIFLAVGRVGSSTDLIVQRV 376
R+ VQ++ P +Q M+FSAT KEI+ + F+ + IF V T L + +
Sbjct: 170 RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF-----VDDETKLTLHGL 224
Query: 377 E----FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPAT 432
+ + +++K L DLL N V ++FV++ + AL L FPA
Sbjct: 225 QQYYVKLKDNEKNRKLFDLLDVLEFNQV-------VIFVKSVQRCIALAQLLVEQNFPAI 277
Query: 433 TIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 492
IH Q+ER + FK + ILVAT++ RG+DI V N+D+P D D Y+HR+
Sbjct: 278 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRV 337
Query: 493 GRTGRAGKSGLATAFFNENN 512
R GR G GLA F ++ N
Sbjct: 338 ARAGRFGTKGLAITFVSDEN 357
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 178 bits (451), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 186/358 (51%), Gaps = 33/358 (9%)
Query: 163 CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222
C + P+ VQ IP +I G D++ A++G GKTA F + Q ++ G +V
Sbjct: 26 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL------QQLEPVTGQVSV 79
Query: 223 YPLALILAPTRELSSQIHVEAKKFS-YQTGVKVVVAYGGAPINQQLRELERGV-DILVAT 280
L++ TREL+ QI E ++FS Y VKV V +GG I + L++ I+V T
Sbjct: 80 ----LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGT 135
Query: 281 PGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340
PGR++ L ++L+ I++ LDE D+ML+ + +R+ VQ++ P +Q M+FSA
Sbjct: 136 PGRILALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMTPHEKQVMMFSA 192
Query: 341 TFPKEIQRLASDFLAN--YIFLAVGRVGSSTDLIVQRVE----FVHESDKRSHLMDLLHA 394
T KEI+ + F+ + IF V T L + ++ + +++K L DLL
Sbjct: 193 TLSKEIRPVCRKFMQDPMEIF-----VDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDV 247
Query: 395 QVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK 454
N V ++FV++ + AL L FPA IH Q+ER + FK +
Sbjct: 248 LEFNQV-------VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 300
Query: 455 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENN 512
ILVAT++ RG+DI V N+D+P D D Y+HR+ R GR G GLA F ++ N
Sbjct: 301 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 186/358 (51%), Gaps = 33/358 (9%)
Query: 163 CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222
C + P+ VQ IP +I G D++ A++G GKTA F + Q ++ G +V
Sbjct: 26 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL------QQLEPVTGQVSV 79
Query: 223 YPLALILAPTRELSSQIHVEAKKFS-YQTGVKVVVAYGGAPINQQLRELERGV-DILVAT 280
L++ TREL+ QI E ++FS Y VKV V +GG I + L++ I+V T
Sbjct: 80 ----LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGT 135
Query: 281 PGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340
PGR++ L ++L+ I++ LDE D+ML+ + +R+ VQ++ P +Q M+FSA
Sbjct: 136 PGRILALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMTPHEKQVMMFSA 192
Query: 341 TFPKEIQRLASDFLAN--YIFLAVGRVGSSTDLIVQRVE----FVHESDKRSHLMDLLHA 394
T KEI+ + F+ + IF V T L + ++ + +++K L DLL
Sbjct: 193 TLSKEIRPVCRKFMQDPMEIF-----VDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDV 247
Query: 395 QVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK 454
N V ++FV++ + AL L FPA IH Q+ER + FK +
Sbjct: 248 LEFNQV-------VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 300
Query: 455 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENN 512
ILVAT++ RG+DI V N+D+P D D Y+HR+ R GR G GLA F ++ N
Sbjct: 301 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 197/380 (51%), Gaps = 41/380 (10%)
Query: 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPI 203
+F E+ L L I K+ KP+ +Q A+P+ + R+++A +Q+G+GKTAAF +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 204 ISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ---IHVEAKKFSYQTGVKVVVAYGG 260
++ + E P A+ LAP+REL+ Q + E KF+ T +V
Sbjct: 66 LTRVNPED----------ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV--PDS 113
Query: 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM-GFEPQIR 319
N+Q+ ++V TPG ++DL+ R + LQ I+ LDEAD MLD G Q
Sbjct: 114 FEKNKQI-----NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCI 168
Query: 320 KIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ-RVEF 378
++ + + P Q +LFSATF +++ A + N L + + D I Q ++
Sbjct: 169 RVKRFL----PKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC 224
Query: 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDR 438
+E+DK L +L +++FV TKK A+ L L G + +HGD
Sbjct: 225 KNEADKFDVLTELYGVMTIGS-------SIIFVATKKTANVLYGKLKSEGHEVSILHGDL 277
Query: 439 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPN------DIDDYVHRI 492
QER+ + F+ G++ +L+ T+V ARG+DIP V+ VVN+DLP D Y+HRI
Sbjct: 278 QTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRI 337
Query: 493 GRTGRAGKSGLATAFFNENN 512
GRTGR G+ G+A +F ++ N
Sbjct: 338 GRTGRFGRKGVAISFVHDKN 357
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 197/380 (51%), Gaps = 41/380 (10%)
Query: 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPI 203
+F E+ L L I K+ KP+ +Q A+P+ + R+++A +Q+G+GKTAAF +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 204 ISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ---IHVEAKKFSYQTGVKVVVAYGG 260
++ + E P A+ LAP+REL+ Q + E KF+ T +V
Sbjct: 66 LTRVNPED----------ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV--PDS 113
Query: 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM-GFEPQIR 319
N+Q+ ++V TPG ++DL+ R + LQ I+ LDEAD MLD G Q
Sbjct: 114 FEKNKQI-----NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCI 168
Query: 320 KIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ-RVEF 378
++ + + P Q +LFSATF +++ A + N L + + D I Q ++
Sbjct: 169 RVKRFL----PKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC 224
Query: 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDR 438
+E+DK L +L +++FV TKK A+ L L G + +HGD
Sbjct: 225 KNEADKFDVLTELYGLMTIGS-------SIIFVATKKTANVLYGKLKSEGHEVSILHGDL 277
Query: 439 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPN------DIDDYVHRI 492
QER+ + F+ G++ +L+ T+V ARG+DIP V+ VVN+DLP D Y+HRI
Sbjct: 278 QTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRI 337
Query: 493 GRTGRAGKSGLATAFFNENN 512
GRTGR G+ G+A +F ++ N
Sbjct: 338 GRTGRFGRKGVAISFVHDKN 357
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 124/394 (31%), Positives = 203/394 (51%), Gaps = 21/394 (5%)
Query: 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198
N V F +++L E L + + +P+ +Q+ AI I G D++A AQ+G+GKT
Sbjct: 16 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 75
Query: 199 FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258
F + I + P AL+LAPTREL+ QI ++ +KV
Sbjct: 76 FSIAALQRI----------DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI 125
Query: 259 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQI 318
GG + L R I+V TPGR+ D ++R R I+ LDEAD ML GF+ QI
Sbjct: 126 GGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQI 184
Query: 319 RKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEF 378
+I + PP Q +L SAT P ++ + + F+ N + + V + + + I Q
Sbjct: 185 YQI---FTLLPPTT-QVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVN 240
Query: 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDR 438
V E + + + L+ + + QA+ +F T++ + L L + F + I+ D
Sbjct: 241 VEEEEYKYECLTDLY----DSISVTQAV--IFCNTRRKVEELTTKLRNDKFTVSAIYSDL 294
Query: 439 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 498
QQER+ ++ F+SG + IL++TD+ ARG+D+ V+ V+N+DLP + ++Y+HRIGR GR
Sbjct: 295 PQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRF 354
Query: 499 GKSGLATAFFNENNMSLARPLTELMQEANQEVPA 532
G+ G+A F ++ R L + +E+P+
Sbjct: 355 GRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 388
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 168 bits (425), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 123/394 (31%), Positives = 198/394 (50%), Gaps = 21/394 (5%)
Query: 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198
N V F + +L E L + + +P+ +Q+ AI I G D++A AQ+G+GKT
Sbjct: 15 NYDKVVYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGT 74
Query: 199 FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258
F + I + P AL LAPTREL+ QI ++ +KV
Sbjct: 75 FSIAALQRI----------DTSVKAPQALXLAPTRELALQIQKVVXALAFHXDIKVHACI 124
Query: 259 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQI 318
GG + L R I+V TPGR+ D ++R R I+ LDEAD L GF+ QI
Sbjct: 125 GGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKXFILDEADEXLSSGFKEQI 183
Query: 319 RKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEF 378
+I + PP Q +L SAT P ++ + + F N + + V + + + I Q
Sbjct: 184 YQI---FTLLPPTT-QVVLLSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVN 239
Query: 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDR 438
V E + + + L+ + + QA+ +F T++ + L L + F + I+ D
Sbjct: 240 VEEEEYKYECLTDLY----DSISVTQAV--IFCNTRRKVEELTTKLRNDKFTVSAIYSDL 293
Query: 439 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 498
QQER+ + F+SG + IL++TD+ ARG+D+ V+ V+N+DLP + ++Y+HRIGR GR
Sbjct: 294 PQQERDTIXKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRF 353
Query: 499 GKSGLATAFFNENNMSLARPLTELMQEANQEVPA 532
G+ G+A F ++ R L + +E+P+
Sbjct: 354 GRKGVAINFVTNEDVGAXRELEKFYSTQIEELPS 387
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 120/403 (29%), Positives = 200/403 (49%), Gaps = 27/403 (6%)
Query: 152 LGEALNLNIRRCKYVKPTPVQRHAIP--ISIGGRDLMACAQTGSGKTAAFCFPIISGIMR 209
L + ++ I R ++ TPVQ+ I +S D++A A+TG+GKT AF PI ++
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 210 EQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF-SYQTGVK---VVVAYGGAPINQ 265
++ A+I+APTR+L+ QI E KK G+K V GG
Sbjct: 88 TKF------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 141
Query: 266 QLRELERGV-DILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFEPQ---IRK 320
+ ++ + +I++ATPGRL+D+LE+ + + + Y LDEADR+L++GF I
Sbjct: 142 AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISG 201
Query: 321 IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVE--- 377
I+ + + +T+LFSAT ++Q+LA++ + L + V + +R++
Sbjct: 202 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 261
Query: 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL---YMNGFPATTI 434
+ E S + H + ++F T K L L + P
Sbjct: 262 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEF 321
Query: 435 HGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGR 494
HG TQ +R ++ FK ++ ILV TDV ARG+D P+V V+ +P+++ +Y+HRIGR
Sbjct: 322 HGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGR 381
Query: 495 TGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVPAWLNRY 537
T R+GK G + F ++ + R L ++A V A +Y
Sbjct: 382 TARSGKEGSSVLFICKDELPFVREL----EDAKNIVIAKQEKY 420
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 120/403 (29%), Positives = 200/403 (49%), Gaps = 27/403 (6%)
Query: 152 LGEALNLNIRRCKYVKPTPVQRHAIP--ISIGGRDLMACAQTGSGKTAAFCFPIISGIMR 209
L + ++ I R ++ TPVQ+ I +S D++A A+TG+GKT AF PI ++
Sbjct: 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 138
Query: 210 EQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF-SYQTGVK---VVVAYGGAPINQ 265
++ A+I+APTR+L+ QI E KK G+K V GG
Sbjct: 139 TKF------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 192
Query: 266 QLRELERGV-DILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFEPQ---IRK 320
+ ++ + +I++ATPGRL+D+LE+ + + + Y LDEADR+L++GF I
Sbjct: 193 AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISG 252
Query: 321 IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVE--- 377
I+ + + +T+LFSAT ++Q+LA++ + L + V + +R++
Sbjct: 253 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 312
Query: 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL---YMNGFPATTI 434
+ E S + H + ++F T K L L + P
Sbjct: 313 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEF 372
Query: 435 HGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGR 494
HG TQ +R ++ FK ++ ILV TDV ARG+D P+V V+ +P+++ +Y+HRIGR
Sbjct: 373 HGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGR 432
Query: 495 TGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVPAWLNRY 537
T R+GK G + F ++ + R L ++A V A +Y
Sbjct: 433 TARSGKEGSSVLFICKDELPFVREL----EDAKNIVIAKQEKY 471
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 203/403 (50%), Gaps = 27/403 (6%)
Query: 152 LGEALNLNIRRCKYVKPTPVQRHAIP--ISIGGRDLMACAQTGSGKTAAFCFPIISGIMR 209
L + ++ I R ++ TPVQ+ I +S D++A A+TG+GKT AF PI ++
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 210 EQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF-SYQTGVK---VVVAYGGAPINQ 265
++ S+ + A+I+APTR+L+ QI E KK G+K V GG
Sbjct: 88 TKF-----DSQYMVK-AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 141
Query: 266 QLRELERGV-DILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFEPQ---IRK 320
+ ++ + +I++ATPGRL+D+LE+ + + + Y LDEADR+L++GF I
Sbjct: 142 AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISG 201
Query: 321 IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVE--- 377
I+ + + +T+LFSAT ++Q+LA++ + L + V + +R++
Sbjct: 202 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 261
Query: 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL---YMNGFPATTI 434
+ E S + H + ++F T K L L + P
Sbjct: 262 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEF 321
Query: 435 HGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGR 494
HG TQ +R ++ FK ++ ILV TDV ARG+D P+V V+ +P+++ +Y+HRIGR
Sbjct: 322 HGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGR 381
Query: 495 TGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVPAWLNRY 537
T R+GK G + F ++ + R L ++A V A +Y
Sbjct: 382 TARSGKEGSSVLFICKDELPFVREL----EDAKNIVIAKQEKY 420
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 128/204 (62%), Gaps = 9/204 (4%)
Query: 159 NIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218
+I R +KPTP+Q A PI + G DL+ AQTG+GKT ++ P + + + R
Sbjct: 34 SIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93
Query: 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILV 278
P L+L PTREL+ + E K+SY+ G+K + YGG N Q+ ++ +GVDI++
Sbjct: 94 G----PGMLVLTPTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDIII 148
Query: 279 ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338
ATPGRL DL V+L+ I YL +DEAD+MLDM FEPQIRKI+ +D+ P RQT++
Sbjct: 149 ATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL--LDVRPD--RQTVMT 204
Query: 339 SATFPKEIQRLASDFLANYIFLAV 362
SAT+P +++LA +L + + + V
Sbjct: 205 SATWPDTVRQLALSYLKDPMIVYV 228
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 183/378 (48%), Gaps = 42/378 (11%)
Query: 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFC 200
+V +F E+ L L + + +P+ +Q +A+P+ + ++L+A +Q+G+GKTAAF
Sbjct: 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HVEAKKFSYQTGVKVVVAYG 259
++S + P YP L L+PT EL+ Q V + + +K+ A
Sbjct: 150 LAMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 199
Query: 260 GAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DMG 313
G +LERG I++ TPG ++D + + + + I+ LDEAD M+ G
Sbjct: 200 G-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 252
Query: 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIV 373
+ Q +I + + P Q +LFSATF + + A + + + + R + D I
Sbjct: 253 HQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK 308
Query: 374 QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATT 433
Q D++ + L+ + A ++F T+K A L L G
Sbjct: 309 QYYVLCSSRDEKFQALCNLYGAIT------IAQAMIFCHTRKTASWLAAELSKEGHQVAL 362
Query: 434 IHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDID------D 487
+ G+ ++R + F+ GK +LV T+V ARG+D+ V+ V+NFDLP D D
Sbjct: 363 LSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNET 422
Query: 488 YVHRIGRTGRAGKSGLAT 505
Y+HRIGRTGR GK GLA
Sbjct: 423 YLHRIGRTGRFGKRGLAV 440
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 183/378 (48%), Gaps = 42/378 (11%)
Query: 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFC 200
+V +F E+ L L + + +P+ +Q +A+P+ + ++L+A +Q+G+GKTAAF
Sbjct: 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HVEAKKFSYQTGVKVVVAYG 259
++S + P YP L L+PT EL+ Q V + + +K+ A
Sbjct: 83 LAMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 132
Query: 260 GAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DMG 313
G +LERG I++ TPG ++D + + + + I+ LDEAD M+ G
Sbjct: 133 G-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 185
Query: 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIV 373
+ Q +I + + P Q +LFSATF + + A + + + + R + D I
Sbjct: 186 HQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK 241
Query: 374 QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATT 433
Q D++ + L+ + A ++F T+K A L L G
Sbjct: 242 QYYVLCSSRDEKFQALCNLYGAIT------IAQAMIFCHTRKTASWLAAELSKEGHQVAL 295
Query: 434 IHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDID------D 487
+ G+ ++R + F+ GK +LV T+V ARG+D+ V+ V+NFDLP D D
Sbjct: 296 LSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNET 355
Query: 488 YVHRIGRTGRAGKSGLAT 505
Y+HRIGRTGR GK GLA
Sbjct: 356 YLHRIGRTGRFGKRGLAV 373
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 183/378 (48%), Gaps = 42/378 (11%)
Query: 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFC 200
+V +F E+ L L + + +P+ +Q +A+P+ + ++L+A +Q+G+GKTAAF
Sbjct: 39 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 98
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HVEAKKFSYQTGVKVVVAYG 259
++S + P YP L L+PT EL+ Q V + + +K+ A
Sbjct: 99 LAMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 148
Query: 260 GAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DMG 313
G +LERG I++ TPG ++D + + + + I+ LDEAD M+ G
Sbjct: 149 G-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 201
Query: 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIV 373
+ Q +I + + P Q +LFSATF + + A + + + + R + D I
Sbjct: 202 HQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK 257
Query: 374 QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATT 433
Q D++ + L+ + A ++F T+K A L L G
Sbjct: 258 QYYVLCSSRDEKFQALCNLYGAIT------IAQAMIFCHTRKTASWLAAELSKEGHQVAL 311
Query: 434 IHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDID------D 487
+ G+ ++R + F+ GK +LV T+V ARG+D+ V+ V+NFDLP D D
Sbjct: 312 LSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNET 371
Query: 488 YVHRIGRTGRAGKSGLAT 505
Y+HRIGRTGR GK GLA
Sbjct: 372 YLHRIGRTGRFGKRGLAV 389
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 183/378 (48%), Gaps = 42/378 (11%)
Query: 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFC 200
+V +F E+ L L + + +P+ +Q +A+P+ + ++L+A +Q+G+GKTAAF
Sbjct: 60 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 119
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HVEAKKFSYQTGVKVVVAYG 259
++S + P YP L L+PT EL+ Q V + + +K+ A
Sbjct: 120 LAMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 169
Query: 260 GAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DMG 313
G +LERG I++ TPG ++D + + + + I+ LDEAD M+ G
Sbjct: 170 G-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 222
Query: 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIV 373
+ Q +I + + P Q +LFSATF + + A + + + + R + D I
Sbjct: 223 HQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK 278
Query: 374 QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATT 433
Q D++ + L+ + A ++F T+K A L L G
Sbjct: 279 QYYVLCSSRDEKFQALCNLYGAIT------IAQAMIFCHTRKTASWLAAELSKEGHQVAL 332
Query: 434 IHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDID------D 487
+ G+ ++R + F+ GK +LV T+V ARG+D+ V+ V+NFDLP D D
Sbjct: 333 LSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNET 392
Query: 488 YVHRIGRTGRAGKSGLAT 505
Y+HRIGRTGR GK GLA
Sbjct: 393 YLHRIGRTGRFGKRGLAV 410
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 180/358 (50%), Gaps = 47/358 (13%)
Query: 171 VQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI 228
+Q A+P+ + R+++ +Q+G+GKTAAF ++S + + V +P+ A+
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV--DASVPKPQ--------AIC 194
Query: 229 LAPTRELSSQIHVEAKKFSYQTGVKVVVAYG-------GAPINQQLRELERGVDILVATP 281
LAP+REL+ QI + T VK A+G GA I+ Q I++ TP
Sbjct: 195 LAPSRELARQIMDVVTEMGKYTEVKT--AFGIKDSVPKGAKIDAQ---------IVIGTP 243
Query: 282 GRLVDLLERARVSLQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSA 340
G ++DL++R ++ + I+ LDEAD MLD G Q +I + P Q +LFSA
Sbjct: 244 GTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL----PRNTQIVLFSA 299
Query: 341 TFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGV 400
TF + +++ A F N + + S + I Q + + +++ L+ + G
Sbjct: 300 TFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIG- 358
Query: 401 HGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA 460
+++F + K A+ + + +G + G+ +R+ + SF+ G + +LV
Sbjct: 359 -----QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVT 413
Query: 461 TDVAARGLDIPHVAHVVNFDLPNDI------DDYVHRIGRTGRAGKSGLATAFFNENN 512
T+V ARG+D+ V VVN+D+P D Y+HRIGRTGR G+ G++ F ++
Sbjct: 414 TNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 471
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 135/253 (53%), Gaps = 38/253 (15%)
Query: 111 AEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTP 170
A QP+ EEE T TF ++ + + L + + KPT
Sbjct: 32 ASQPIVEEEET-----------------------KTFKDLGVTDVLCEACDQLGWTKPTK 68
Query: 171 VQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA 230
+Q AIP+++ GRD++ A+TGSGKT AF PI++ ++ + QR AL+L
Sbjct: 69 IQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQR--------LFALVLT 118
Query: 231 PTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER 290
PTREL+ QI + + GV+ V GG Q L + I++ATPGRL+D LE
Sbjct: 119 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLEN 178
Query: 291 AR-VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRL 349
+ +L+ ++YL +DEADR+L+M FE ++ KI++ + P R+T LFSAT K++Q+L
Sbjct: 179 TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI----PRDRKTFLFSATMTKKVQKL 234
Query: 350 ASDFLANYIFLAV 362
L N + AV
Sbjct: 235 QRAALKNPVKCAV 247
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 139 bits (349), Expect = 5e-33, Method: Composition-based stats.
Identities = 69/171 (40%), Positives = 106/171 (61%), Gaps = 9/171 (5%)
Query: 365 VGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL 424
+G+++ ++Q VE+V E K +L++ L L+F E K DA+ +L
Sbjct: 23 MGAASLDVIQEVEYVKEEAKMVYLLECLQK--------TPPPVLIFAEKKADVDAIHEYL 74
Query: 425 YMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPND 484
+ G A IHG + Q+ER A+ +F+ GK +LVATDVA++GLD P + HV+N+D+P +
Sbjct: 75 LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE 134
Query: 485 IDDYVHRIGRTGRAGKSGLATAFFNEN-NMSLARPLTELMQEANQEVPAWL 534
I++YVHRIGRTG +G +G+AT F N+ + S+ L L+ EA Q+VP L
Sbjct: 135 IENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 185
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 110/195 (56%), Gaps = 13/195 (6%)
Query: 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227
PTP+Q A+P+++ G+DL+ A+TG+GKT AF PI + P R P AL
Sbjct: 24 PTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLA-------PSQERGRKPRAL 76
Query: 228 ILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDL 287
+L PTREL+ Q+ E + +KVV YGG +Q L RG D +VATPGR +D
Sbjct: 77 VLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDY 134
Query: 288 LERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347
L + + L + LDEAD ML MGFE ++ + + PP RQT+LFSAT P +
Sbjct: 135 LRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEAL---LSATPPS-RQTLLFSATLPSWAK 190
Query: 348 RLASDFLANYIFLAV 362
RLA ++ N + + V
Sbjct: 191 RLAERYMKNPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 110/195 (56%), Gaps = 13/195 (6%)
Query: 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227
PTP++ A+P+++ G+DL+ A+TG+GKT AF PI + P R P AL
Sbjct: 24 PTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLA-------PSQERGRKPRAL 76
Query: 228 ILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDL 287
+L PTREL+ Q+ E + +KVV YGG +Q L RG D +VATPGR +D
Sbjct: 77 VLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDY 134
Query: 288 LERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347
L + + L + LDEAD ML MGFE ++ + + PP RQT+LFSAT P +
Sbjct: 135 LRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEAL---LSATPPS-RQTLLFSATLPSWAK 190
Query: 348 RLASDFLANYIFLAV 362
RLA ++ N + + V
Sbjct: 191 RLAERYMKNPVLINV 205
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 122/214 (57%), Gaps = 21/214 (9%)
Query: 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPII 204
N F + L L + I + KP+P+Q +IPI++ GRD++A A+ G+GK+ A+ P++
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 205 SGI-MREQYVQRPRGSRTVYPLALILAPTRELS---SQIHVEAKKFSYQTGVKVVVAYGG 260
+ +++ +Q A+++ PTREL+ SQI ++ K + G KV+ GG
Sbjct: 63 ERLDLKKDNIQ-----------AMVIVPTRELALQVSQICIQVSK--HMGGAKVMATTGG 109
Query: 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK 320
+ + L+ V +++ATPGR++DL+++ + ++ + LDEAD++L F +
Sbjct: 110 TNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF----VQ 165
Query: 321 IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354
I++ + + P RQ +L+SATFP +Q+ + L
Sbjct: 166 IMEDIILTLPKNRQILLYSATFPLSVQKFMNSHL 199
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 115/192 (59%), Gaps = 11/192 (5%)
Query: 160 IRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219
I+ + T +Q +I + GRDL+A A+TGSGKT AF P + I++ +++ PR
Sbjct: 69 IKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNG 126
Query: 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVA 279
V LIL+PTREL+ Q K+ + GG+ + + ++L G++I+VA
Sbjct: 127 TGV----LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVA 182
Query: 280 TPGRLVDLLERA-RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338
TPGRL+D ++ + ++ L +DEADR+LD+GFE ++++I++ + P RQTMLF
Sbjct: 183 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL----PTRRQTMLF 238
Query: 339 SATFPKEIQRLA 350
SAT ++++ LA
Sbjct: 239 SATQTRKVEDLA 250
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 132/243 (54%), Gaps = 26/243 (10%)
Query: 133 VETSGENVPPAVNTFAEID----LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMAC 188
+ G ++P + TF ++D + L NI + PTP+Q AIP+ + GR+L+A
Sbjct: 13 IHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLAS 72
Query: 189 AQTGSGKTAAFCFPIISGIMREQYVQRP--RGSRTVYPLALILAPTRELSSQIHVEAKKF 246
A TGSGKT AF PI+ +++P +G R ALI++PTREL+SQIH E K
Sbjct: 73 APTGSGKTLAFSIPIL------MQLKQPANKGFR-----ALIISPTRELASQIHRELIKI 121
Query: 247 SYQTGVKVVVAYGGAPINQQLR-ELERGVDILVATPGRLVDLLER--ARVSLQMIRYLAL 303
S TG ++ + + A ++ + + DILV TP RL+ LL++ + L + +L +
Sbjct: 122 SEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181
Query: 304 DEADRMLD---MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFL 360
DE+D++ + GF Q+ I + +R+ M FSATF ++++ L N I +
Sbjct: 182 DESDKLFEDGKTGFRDQLASIF--LACTSHKVRRAM-FSATFAYDVEQWCKLNLDNVISV 238
Query: 361 AVG 363
++G
Sbjct: 239 SIG 241
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 15/222 (6%)
Query: 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPI 203
V+ F +++L E+L I + KP+ +Q+ AI I G D++A AQ+G+GKTA F I
Sbjct: 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISI 88
Query: 204 ISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263
+ + E + AL+LAPTREL+ QI G GG +
Sbjct: 89 LQQLEIEFKETQ----------ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNV 138
Query: 264 NQQLRELE-RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322
++++L+ I+V TPGR+ D+L R +S + I+ LDEAD ML GF+ QI +I
Sbjct: 139 RNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIF 198
Query: 323 QQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR 364
Q+++ Q +L SAT P ++ + F+ + I + V +
Sbjct: 199 QKLNTSI----QVVLLSATMPTDVLEVTKKFMRDPIRILVKK 236
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 113/215 (52%), Gaps = 14/215 (6%)
Query: 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPI 203
+ F++ L + ++ +Y T +Q+ I +++ G+D++ A+TGSGKT AF P+
Sbjct: 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 83
Query: 204 ISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263
+ + R Q+ + T LI++PTREL+ Q +K + GG +
Sbjct: 84 LEALYRLQW------TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDL 137
Query: 264 NQQLRELERGVDILVATPGRLVDLLERARVSLQM--IRYLALDEADRMLDMGFEPQIRKI 321
+ + ++ILV TPGRL+ ++ VS ++ L LDEADR+LDMGF + +
Sbjct: 138 KHEAERI-NNINILVCTPGRLLQHMDET-VSFHATDLQMLVLDEADRILDMGFADTMNAV 195
Query: 322 VQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN 356
++ + P RQT+LFSAT K ++ LA L N
Sbjct: 196 IENL----PKKRQTLLFSATQTKSVKDLARLSLKN 226
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198
N V F +++L E L + + +P+ +Q+ AI I G D++A AQ+G+GKT
Sbjct: 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67
Query: 199 FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258
F + I + P AL+LAPTREL+ QI ++ +KV
Sbjct: 68 FSIAALQRI----------DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI 117
Query: 259 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQI 318
GG + L R I+V TPGR+ D ++R R I+ LDEAD ML GF+ QI
Sbjct: 118 GGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQI 176
Query: 319 RKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR 364
+I + PP Q +L SAT P ++ + + F+ N + + V +
Sbjct: 177 YQI---FTLLPP-TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 107/218 (49%), Gaps = 15/218 (6%)
Query: 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198
N V F +++L E L + + +P+ +Q+ AI I G D++A AQ+G+GKT
Sbjct: 15 NYQKVVYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 74
Query: 199 FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258
F + I + P AL+LAPTREL+ QI ++ +KV
Sbjct: 75 FSIAALQRI----------DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI 124
Query: 259 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQI 318
GG + L R I+V TPGR+ D ++R R I+ LDEAD ML GF+ QI
Sbjct: 125 GGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQI 183
Query: 319 RKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN 356
+I + PP Q +L SAT P ++ + + F+ N
Sbjct: 184 YQI---FTLLPP-TTQVVLLSATMPNDVLEVTTKFMRN 217
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 15/225 (6%)
Query: 134 ETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGS 193
+ G V + F + L L I C + P+ VQ IP +I G D++ A++G
Sbjct: 3 DVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGM 62
Query: 194 GKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS-YQTGV 252
GKTA F + Q ++ G +V L++ TREL+ QI E ++FS Y V
Sbjct: 63 GKTAVFVLATL------QQLEPVTGQVSV----LVMCHTRELAFQISKEYERFSKYMPNV 112
Query: 253 KVVVAYGGAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD 311
KV V +GG I + L++ I+V TPGR++ L ++L+ I++ LDE D+ML+
Sbjct: 113 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 172
Query: 312 MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN 356
+ +R+ VQ++ P +Q M+FSAT KEI+ + F+ +
Sbjct: 173 ---QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 214
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 104/212 (49%), Gaps = 15/212 (7%)
Query: 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPI 203
V++F +++L E+L I + P+ +Q+ AI I G D++A AQ+G+G TA F I
Sbjct: 14 VDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISI 73
Query: 204 ISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263
+ I + + AL+LAPTREL+ QI G GG +
Sbjct: 74 LQQIELDLXATQ----------ALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNV 123
Query: 264 NQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322
+++ L+ I+V TPGR+ D+L R +S I LDEAD ML GF QI I
Sbjct: 124 RAEVQXLQMEAPHIIVGTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIF 183
Query: 323 QQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354
Q ++ Q +L SAT P ++ + F+
Sbjct: 184 QXLN----SNTQVVLLSATMPSDVLEVTXXFM 211
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 100 bits (249), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
+++FV TKK A+ L L G + +HGD QER+ + F+ G++ +L+ T+V AR
Sbjct: 40 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 99
Query: 467 GLDIPHVAHVVNFDLPN------DIDDYVHRIGRTGRAGKSGLATAFFNENN 512
G+DIP V+ VVN+DLP D Y+HRIGRTGR G+ G+A +F ++ N
Sbjct: 100 GIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 151
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 100 bits (249), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
+++FV TKK A+ L L G + +HGD QER+ + F+ G++ +L+ T+V AR
Sbjct: 39 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 98
Query: 467 GLDIPHVAHVVNFDLPN------DIDDYVHRIGRTGRAGKSGLATAFFNENN 512
G+DIP V+ VVN+DLP D Y+HRIGRTGR G+ G+A +F ++ N
Sbjct: 99 GIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 150
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
+++FV TKK A+ L L G + +HGD QER+ + F+ G++ +L+ T+V AR
Sbjct: 38 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 97
Query: 467 GLDIPHVAHVVNFDLPN------DIDDYVHRIGRTGRAGKSGLATAFFNENN 512
G+DIP V+ VVN+DLP D Y+HRIGRTGR G+ G+A +F ++ N
Sbjct: 98 GIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 149
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 70/119 (58%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
++VFV ++ L +WL G + G+ Q +R A++ G+ +LVATDVAAR
Sbjct: 33 SIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAAR 92
Query: 467 GLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQE 525
G+DIP V+HV NFD+P D Y+HRIGRT RAG+ G A + ++ L + ++E
Sbjct: 93 GIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 57/142 (40%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 366 GSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLY 425
G +T I V V E +K S L D+L + + ++F TK+ + L L
Sbjct: 4 GLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSC-------IIFCRTKEHVNQLTDELD 56
Query: 426 MNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDI 485
G+P IHG Q++R + FK G+ LVATDVAARG+DI +++ V+N+DLP +
Sbjct: 57 DLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEK 116
Query: 486 DDYVHRIGRTGRAGKSGLATAF 507
+ YVHR GRTGRAG G A +F
Sbjct: 117 ESYVHRTGRTGRAGNKGKAISF 138
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 103/201 (51%), Gaps = 25/201 (12%)
Query: 160 IRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219
+R + +P+PVQ AIP+ G DL+ A++G+GKT F + ++ E +
Sbjct: 39 LRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQ---- 94
Query: 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILV 278
LILAPTRE++ QIH + G++ V GG P++Q L++ I V
Sbjct: 95 ------ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CHIAV 147
Query: 279 ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTML 337
+PGR+ L+E ++ IR LDEAD++L+ G F+ QI I + P +Q +
Sbjct: 148 GSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSL----PASKQMLA 203
Query: 338 FSATFPKEIQRLASDFLANYI 358
SAT+P +FLAN +
Sbjct: 204 VSATYP--------EFLANAL 216
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 20/208 (9%)
Query: 160 IRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQY-VQRPRG 218
I+ ++ KPT +Q IP ++ G + +QTG+GKT A+ PI I E+ VQ
Sbjct: 19 IKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKIKPERAEVQ---- 74
Query: 219 SRTVYPLALILAPTRELSSQIHVEAKKFS-YQTGVKVVVA---YGGAPINQQLRELERGV 274
A+I APTREL++QI+ E K + + + +VA GG + L +L
Sbjct: 75 -------AVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQP 127
Query: 275 DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQ 334
I++ TPGR+ D + + + L +DEAD LD GF + +I + P Q
Sbjct: 128 HIVIGTPGRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAARX----PKDLQ 183
Query: 335 TMLFSATFPKEIQRLASDFLANYIFLAV 362
++FSAT P++++ + N F+ V
Sbjct: 184 XLVFSATIPEKLKPFLKKYXENPTFVHV 211
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDR 438
+ +++K L DLL N V ++FV++ + AL L FPA IH
Sbjct: 13 LKDNEKNRKLFDLLDVLEFNQV-------VIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 65
Query: 439 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 498
Q+ER + FK + ILVAT++ RG+DI V N+D+P D D Y+HR+ R GR
Sbjct: 66 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 125
Query: 499 GKSGLATAFFNENN 512
G GLA F ++ N
Sbjct: 126 GTKGLAITFVSDEN 139
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 27/220 (12%)
Query: 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFC 200
+ +F E+ L L I K+ KP+ +Q A+P+ + R+++A +Q+G+GKTAAF
Sbjct: 20 SAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 79
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ---IHVEAKKFSYQTGVKVVVA 257
+++ + E P A+ LAP+REL+ Q + E KF+ T +V
Sbjct: 80 LTMLTRVNPED----------ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV-- 127
Query: 258 YGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEP 316
N+Q+ ++V TPG ++DL+ R + LQ I+ LDEAD MLD G
Sbjct: 128 PDSFEKNKQI-----NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGD 182
Query: 317 QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN 356
Q ++ + + P Q +LFSATF +++ A + N
Sbjct: 183 QCIRVKRFL----PKDTQLVLFSATFADAVRQYAKKIVPN 218
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/103 (39%), Positives = 63/103 (61%), Gaps = 6/103 (5%)
Query: 408 LVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARG 467
++F +T++ A L + +G + + G+ T ++R ++ F+ GK +L+ T+V ARG
Sbjct: 38 IIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARG 97
Query: 468 LDIPHVAHVVNFDLP------NDIDDYVHRIGRTGRAGKSGLA 504
+D+ V VVNFDLP D + Y+HRIGRTGR GK GLA
Sbjct: 98 IDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLA 140
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 7/133 (5%)
Query: 408 LVFVETKKGADALEHWL---YMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVA 464
++F T K L L + P HG TQ +R ++ FK ++ ILV TDV
Sbjct: 37 IIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVG 96
Query: 465 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQ 524
ARG+D P+V V+ +P+++ +Y+HRIGRT R+GK G + F ++ + R L +
Sbjct: 97 ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL----E 152
Query: 525 EANQEVPAWLNRY 537
+A V A +Y
Sbjct: 153 DAKNIVIAKQEKY 165
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 7/133 (5%)
Query: 408 LVFVETKKGADALEHWL---YMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVA 464
++F T K L L + P HG TQ +R ++ FK ++ ILV TDV
Sbjct: 37 IIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVG 96
Query: 465 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQ 524
ARG+D P+V V+ +P+++ +Y+HRIGRT R+GK G + F ++ + R L +
Sbjct: 97 ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL----E 152
Query: 525 EANQEVPAWLNRY 537
+A V A +Y
Sbjct: 153 DAKNIVIAKQEKY 165
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 7/133 (5%)
Query: 408 LVFVETKKGADALEHWL---YMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVA 464
++F T K L L + P HG TQ +R ++ FK ++ ILV TDV
Sbjct: 37 IIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVG 96
Query: 465 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQ 524
ARG+D P+V V+ +P+++ +Y+HRIGRT R+GK G + F ++ + R L +
Sbjct: 97 ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL----E 152
Query: 525 EANQEVPAWLNRY 537
+A V A +Y
Sbjct: 153 DAKNIVIAKQEKY 165
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 52/84 (61%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
+VF TK + + L G PA +HGD +Q ERE L +F+ G+ +LVATDVAAR
Sbjct: 34 AMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAAR 93
Query: 467 GLDIPHVAHVVNFDLPNDIDDYVH 490
GLDIP V VV++ LP+ + Y H
Sbjct: 94 GLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 77.8 bits (190), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 77/125 (61%)
Query: 408 LVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARG 467
++F T++ + L L + F + I+ D QQER+ ++ F+SG + IL++TD+ ARG
Sbjct: 34 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 93
Query: 468 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEAN 527
+D+ V+ V+N+DLP + ++Y+HRIGR GR G+ G+A F ++ R L +
Sbjct: 94 IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQI 153
Query: 528 QEVPA 532
+E+P+
Sbjct: 154 EELPS 158
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 52/84 (61%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
+VF TK + + L G PA +HGD +Q ERE + +F+ G+ +LVATDVAAR
Sbjct: 31 AMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAAR 90
Query: 467 GLDIPHVAHVVNFDLPNDIDDYVH 490
GLDIP V VV++ +P+ + Y H
Sbjct: 91 GLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 67/137 (48%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
+++F + + + L + G+ IH Q+ R F++G LV TD+ R
Sbjct: 47 SIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTR 106
Query: 467 GLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEA 526
G+DI V V+NFD P + Y+HRIGR+GR G GLA ++ + + E +
Sbjct: 107 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTE 166
Query: 527 NQEVPAWLNRYASRANY 543
+ +P+ +++ A Y
Sbjct: 167 IKPIPSNIDKSLYVAEY 183
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 30/217 (13%)
Query: 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFC 200
+V +F E+ L L + + +P+ +Q +A+P+ + ++L+A +Q+G+GKTAAF
Sbjct: 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HVEAKKFSYQTGVKVVVAYG 259
++S + P YP L L+PT EL+ Q V + + +K+ A
Sbjct: 150 LAMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 199
Query: 260 GAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DMG 313
G +LERG I++ TPG ++D + + + + I+ LDEAD M+ G
Sbjct: 200 G-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 252
Query: 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLA 350
+ Q +I + + P Q +LFSATF + + A
Sbjct: 253 HQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFA 285
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 30/217 (13%)
Query: 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFC 200
+V +F E+ L L + + +P+ +Q +A+P+ + ++L+A +Q+G+GKTAAF
Sbjct: 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82
Query: 201 FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HVEAKKFSYQTGVKVVVAYG 259
++S + P YP L L+PT EL+ Q V + + +K+ A
Sbjct: 83 LAMLSQV-------EPANK---YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 132
Query: 260 GAPINQQLRELERGV----DILVATPGRLVDLLERAR-VSLQMIRYLALDEADRML-DMG 313
G +LERG I++ TPG ++D + + + + I+ LDEAD M+ G
Sbjct: 133 G-------NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 185
Query: 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLA 350
+ Q +I + + P Q +LFSATF + + A
Sbjct: 186 HQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFA 218
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 13/143 (9%)
Query: 364 RVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHW 423
R+ + L+VQ E + K L +++ Q+ + K +VF ++ A + +
Sbjct: 324 RMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSK---IIVFTNYRETAKKIVNE 380
Query: 424 LYMNGFPATTIHG------DR--TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAH 475
L +G A G DR +Q+E++L L F G+ +LVAT V GLD+P V
Sbjct: 381 LVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDL 440
Query: 476 VVNFD-LPNDIDDYVHRIGRTGR 497
VV ++ +P+ I + R GRTGR
Sbjct: 441 VVFYEPVPSAIRS-IQRRGRTGR 462
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 191 TGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT 250
TG GKT + +M +Y G + L+LAPT+ L Q H E+ + +
Sbjct: 32 TGLGKT-------LIAMMIAEYRLTKYGGKV-----LMLAPTKPLVLQ-HAESFRRLFNL 78
Query: 251 GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR 308
+ +VA G ++ + ++VATP + + L R+SL+ + + DEA R
Sbjct: 79 PPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR 136
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 139/366 (37%), Gaps = 44/366 (12%)
Query: 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFP--IISGIMREQYVQRPRGSRTV 222
Y + P Q I + GRD + TG GK+ + P +++G+ + V
Sbjct: 23 YQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGL-----------TVVV 71
Query: 223 YPL-ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATP 281
PL +L+ +L + A S QT + + G Q + +L P
Sbjct: 72 SPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--------IRLLYIAP 123
Query: 282 GRLV--DLLERARVSLQMIRYLALDEADRMLDMG--FEPQIRKIVQQMDMPP--PGMRQT 335
RL+ + LE ++ LA+DEA + G F P+ + Q P P M T
Sbjct: 124 ERLMLDNFLEH--LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALT 181
Query: 336 MLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQ 395
T ++I RL N + + SS D R + + LM + Q
Sbjct: 182 ATADDTTRQDIVRLLG---LNDPLIQI----SSFDRPNIRYMLMEKFKPLDQLMRYVQEQ 234
Query: 396 VANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT 455
GK + ++ ++ + L G A H R F+
Sbjct: 235 -----RGKSGI--IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDL 287
Query: 456 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSL 515
I+VAT G++ P+V VV+FD+P +I+ Y GR GR G A F++ +M+
Sbjct: 288 QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAW 347
Query: 516 ARPLTE 521
R E
Sbjct: 348 LRRCLE 353
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 1/124 (0%)
Query: 408 LVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARG 467
+++ ++ + L G A H R F+ I+VAT G
Sbjct: 240 IIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGXG 299
Query: 468 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMS-LARPLTELMQEA 526
++ P+V VV+FD+P +I+ Y GR GR G A F++ + + L R L E Q
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAXLFYDPADXAWLRRCLEEKPQGQ 359
Query: 527 NQEV 530
Q++
Sbjct: 360 LQDI 363
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 408 LVFVETKKGADALEHWLYMN------GFPATTIHGD--------RTQQERELALRSFKSG 453
++F +T++ A AL W+ N G A + G TQ E++ + F++G
Sbjct: 404 IIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTG 463
Query: 454 KTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 501
K +L+AT VA GLDI V+ + L + V GR RA +S
Sbjct: 464 KINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR-ARADES 510
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
TLV TKK A+ L +L G +H + ER +R + GK +LV ++
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 467 GLDIPHVAHVVNFD 480
GLDIP V+ V D
Sbjct: 508 GLDIPEVSLVAILD 521
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
TLV TKK A+ L +L G +H + ER +R + GK +LV ++
Sbjct: 447 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 506
Query: 467 GLDIPHVAHVVNFD 480
GLDIP V+ V D
Sbjct: 507 GLDIPEVSLVAILD 520
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
TLV TKK A+ L +L G +H + ER +R + GK +LV ++
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 467 GLDIPHVAHVVNFD 480
GLDIP V+ V D
Sbjct: 508 GLDIPEVSLVAILD 521
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
TLV TKK A+ L +L G +H + ER +R + GK +LV ++
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 467 GLDIPHVAHVVNFD 480
GLDIP V+ V D
Sbjct: 508 GLDIPEVSLVAILD 521
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
TLV TKK A+ L +L G +H + ER +R + GK +LV ++
Sbjct: 473 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 532
Query: 467 GLDIPHVAHVVNFD 480
GLDIP V+ V D
Sbjct: 533 GLDIPEVSLVAILD 546
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 14/148 (9%)
Query: 386 SHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 445
+ ++DL+ G++ TLV V T + A+ L +L +G A +H + +R+
Sbjct: 423 NQILDLMEGIRERAARGER--TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQA 480
Query: 446 ALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR----IGRTGRAGKS 501
+R + G LV ++ GLDIP V+ V D D + ++ I GRA ++
Sbjct: 481 LIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILD--ADKEGFLRSERSLIQTIGRAARN 538
Query: 502 GLATAFFNENNMSLARPLTELMQEANQE 529
+ + +S E MQ A +E
Sbjct: 539 ARGEVWLYADRVS------EAMQRAIEE 560
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 14/148 (9%)
Query: 386 SHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 445
+ ++DL+ G++ TLV V T + A+ L +L +G A +H + +R+
Sbjct: 424 NQILDLMEGIRERAARGER--TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQA 481
Query: 446 ALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR----IGRTGRAGKS 501
+R + G LV ++ GLDIP V+ V D D + ++ I GRA ++
Sbjct: 482 LIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILD--ADKEGFLRSERSLIQTIGRAARN 539
Query: 502 GLATAFFNENNMSLARPLTELMQEANQE 529
+ + +S E MQ A +E
Sbjct: 540 ARGEVWLYADRVS------EAMQRAIEE 561
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 404 QALTLVFVETKKGADALEHWL------------YMNGFPATTIHGDRTQQERELALRSFK 451
+ +T++FV+T+ DAL++W+ + G T + T ++ L +FK
Sbjct: 389 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 448
Query: 452 -SGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGR-TGRAGKSGLATA 506
SG IL+AT VA G+DI V+ ++ ++ + GR R K L T+
Sbjct: 449 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS 505
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 175 AIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGSRTVYPLALILAPTR 233
A+P ++ G++ + CA TG GKT +S ++ E ++++ P+G + P
Sbjct: 13 ALP-AMKGKNTIICAPTGCGKT------FVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 65
Query: 234 ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV 293
E + + K+ + G +V G N + ++ DI++ TP LV+ L++ +
Sbjct: 66 EQNKSVF---SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 122
Query: 294 -SLQMIRYLALDEA 306
SL + + DE
Sbjct: 123 PSLSIFTLMIFDEC 136
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 404 QALTLVFVETKKGADALEHWL------------YMNGFPATTIHGDRTQQERELALRSFK 451
+ +T++FV+T+ DAL++W+ + G T + T ++ L +FK
Sbjct: 397 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 456
Query: 452 -SGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGR-TGRAGKSGLATA 506
SG IL+AT VA G+DI V+ ++ ++ + GR R K L T+
Sbjct: 457 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS 513
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 175 AIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGSRTVYPLALILAPTR 233
A+P ++ G++ + CA TG GKT +S ++ E ++++ P+G + P
Sbjct: 21 ALP-AMKGKNTIICAPTGCGKT------FVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 73
Query: 234 ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV 293
E Q V +K F + G +V G N + ++ DI++ TP LV+ L++ +
Sbjct: 74 E--QQKSVFSKYFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 130
Query: 294 -SLQMIRYLALDEA 306
SL + + DE
Sbjct: 131 PSLSIFTLMIFDEC 144
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 404 QALTLVFVETKKGADALEHWL------------YMNGFPATTIHGDRTQQERELALRSFK 451
+ +T++FV+T+ DAL++W+ + G T + T ++ L +FK
Sbjct: 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457
Query: 452 -SGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGR-TGRAGKSGLATA 506
SG IL+AT VA G+DI V+ ++ ++ + GR R K L T+
Sbjct: 458 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS 514
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 175 AIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGSRTVYPLALILAPTR 233
A+P ++ G++ + CA TG GKT +S ++ E ++++ P+G + P
Sbjct: 22 ALP-AMKGKNTIICAPTGCGKT------FVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 74
Query: 234 ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV 293
E + + K+ + G +V G N + ++ DI++ TP LV+ L++ +
Sbjct: 75 EQNKSVF---SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 131
Query: 294 -SLQMIRYLALDEA 306
SL + + DE
Sbjct: 132 PSLSIFTLMIFDEC 145
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 14/88 (15%)
Query: 408 LVFVETKKGADALEHWLYMN------GFPATTIHGD--------RTQQERELALRSFKSG 453
++F +T++ A AL W+ N G A + G TQ E+ + F++G
Sbjct: 154 IIFTKTRQSAYALSQWITDNKKFAEVGVKAHHLIGAGHSSEFKPXTQNEQREVISKFRTG 213
Query: 454 KTPILVATDVAARGLDIPHVAHVVNFDL 481
K +L+AT VA GLDI V+ + L
Sbjct: 214 KINLLIATTVAEEGLDIKECNIVIRYGL 241
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
LV TKK ++ L +L G +H + ER +R + GK +LV ++
Sbjct: 454 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 513
Query: 467 GLDIPHVAHVVNFD 480
GLDIP V+ V D
Sbjct: 514 GLDIPEVSLVAILD 527
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
LV TKK ++ L +L G +H + ER +R + GK +LV ++
Sbjct: 448 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 467 GLDIPHVAHVVNFD 480
GLDIP V+ V D
Sbjct: 508 GLDIPEVSLVAILD 521
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 419 ALEHWLYMNG-----FPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV 473
A+E + Y++ F +HG +Q+E++ + F G+ ILV+T V G+D+P
Sbjct: 599 AVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPR- 657
Query: 474 AHVVNFDLPNDID-DYVHRI-GRTGRAGKSG 502
A+V+ + P +H++ GR GR G+
Sbjct: 658 ANVMVIENPERFGLAQLHQLRGRVGRGGQEA 688
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 407 TLVFVETKKGADALEHWLYMN---GFPATTIHGDRTQQER---------ELALRSFK-SG 453
T++FV+T+ DAL+ W+ N F I R + R + L +F+ SG
Sbjct: 392 TILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGXTLPAQKCVLEAFRASG 451
Query: 454 KTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 501
IL+AT VA G+DI V+ ++ ++ + GR GRA S
Sbjct: 452 DNNILIATSVADEGIDIAECNLVILYEYVGNVIKXIQTRGR-GRARDS 498
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 409 VFVETKKGADALEHWLYM---NGFPATTIHGDRTQQERELALRSFKSGKT--PILVATDV 463
V V K A AL+ + G A H + ER+ A F T +L+ +++
Sbjct: 506 VLVICAKAATALQLEQVLREREGIRAAVFHEGXSIIERDRAAAWFAEEDTGAQVLLCSEI 565
Query: 464 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 501
+ G + +H V FDLP + D RIGR R G++
Sbjct: 566 GSEGRNFQFASHXVXFDLPFNPDLLEQRIGRLDRIGQA 603
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 395 QVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK 454
++ NG + Q+ +++ ++K ++ + L G A H + +++ R + + +
Sbjct: 259 KLINGRYKGQS-GIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANE 317
Query: 455 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGR 497
++VAT G+D P V V++ + +++Y GR GR
Sbjct: 318 IQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGR 360
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Query: 404 QALTLVFVETKKGADALEHWLYMNGF-----PATTIHGDRTQQERELALRS-------FK 451
Q TL+F +T+ AL+ + N P + R Q + L S FK
Sbjct: 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690
Query: 452 SGK-TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 510
+ K +L+AT VA G+DI VV ++ ++ + GR AG + E
Sbjct: 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTE 750
Query: 511 --NNMSLARPLTELMQEANQEVPAW 533
N R E+M +A +++ W
Sbjct: 751 VVENEKCNRYKEEMMNKAVEKIQKW 775
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGSRTVYPLALILAPTRELSS 237
+I G++ + CA TGSGKT +S ++ E + Q P G + P E
Sbjct: 260 AINGKNALICAPTGSGKT------FVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQK 313
Query: 238 QI---HVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV- 293
+ H E + +S Q G+ G N + ++ DI+V TP LV+ E +
Sbjct: 314 NVFKHHFERQGYSVQ-GIS-----GENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 367
Query: 294 SLQMIRYLALDEA 306
SL + + DE
Sbjct: 368 SLSIFTLMIFDEC 380
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Query: 404 QALTLVFVETKKGADALEHWLYMNGF-----PATTIHGDRTQQERELALRS-------FK 451
Q TL+F +T+ AL+ + N P + R Q + L S FK
Sbjct: 390 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449
Query: 452 SGK-TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 510
+ K +L+AT VA G+DI VV ++ ++ + GR AG + E
Sbjct: 450 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTE 509
Query: 511 --NNMSLARPLTELMQEANQEVPAW 533
N R E+M +A +++ W
Sbjct: 510 VVENEKCNRYKEEMMNKAVEKIQKW 534
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGSRTVYPLALILAPTRELSS 237
+I G++ + CA TGSGKT +S ++ E + Q P G + P E
Sbjct: 19 AINGKNALICAPTGSGKT------FVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQK 72
Query: 238 QI---HVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV- 293
+ H E + +S Q G+ G N + ++ DI+V TP LV+ E +
Sbjct: 73 NVFKHHFERQGYSVQ-GIS-----GENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 126
Query: 294 SLQMIRYLALDEA 306
SL + + DE
Sbjct: 127 SLSIFTLMIFDEC 139
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Query: 404 QALTLVFVETKKGADALEHWLYMNGF-----PATTIHGDRTQQERELALRS-------FK 451
Q TL+F +T+ AL+ + N P + R Q + L S FK
Sbjct: 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690
Query: 452 SGK-TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 510
+ K +L+AT VA G+DI VV ++ ++ + GR AG + E
Sbjct: 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTE 750
Query: 511 --NNMSLARPLTELMQEANQEVPAW 533
N R E+M +A +++ W
Sbjct: 751 VVENEKCNRYKEEMMNKAVEKIQKW 775
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR-PRGSRTVYPLALILAPTRELSS 237
+I G++ + CA TGSGKT +S ++ E + Q P G + P E
Sbjct: 260 AINGKNALICAPTGSGKT------FVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQK 313
Query: 238 QI---HVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV- 293
+ H E + +S Q G+ G N + ++ DI+V TP LV+ E +
Sbjct: 314 NVFKHHFERQGYSVQ-GIS-----GENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 367
Query: 294 SLQMIRYLALDEA 306
SL + + DE
Sbjct: 368 SLSIFTLMIFDEC 380
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 439 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 498
+++ERE L F++G+ +V++ V G+D+P V +Y+ R+GR R
Sbjct: 379 SREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRP 438
Query: 499 GK 500
K
Sbjct: 439 SK 440
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI-LAPTRELSSQIHVE 242
+L+ CA TG+GKT ++ I + + G+ V +I +AP R L ++
Sbjct: 97 NLLLCAPTGAGKTNVALMCMLREIGKHINMD---GTINVDDFKIIYIAPMRSLVQEMVGS 153
Query: 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA---RVSLQMIR 299
K G+ V G +Q +E I+V TP + D++ R R Q++R
Sbjct: 154 FGKRLATYGITVAELTGD---HQLCKEEISATQIIVCTPEKW-DIITRKGGERTYTQLVR 209
Query: 300 YLALDEADRMLDMG---FEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343
+ LDE + D E + + ++ ++M +R L SAT P
Sbjct: 210 LIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGL-SATLP 255
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI-LAPTRELSSQIHVE 242
+L+ CA TG+GKT ++ I + + G+ V +I +AP R L ++
Sbjct: 97 NLLLCAPTGAGKTNVALMCMLREIGKHINMD---GTINVDDFKIIYIAPMRSLVQEMVGS 153
Query: 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA---RVSLQMIR 299
K G+ V G +Q +E I+V TP + D++ R R Q++R
Sbjct: 154 FGKRLATYGITVAELTGD---HQLCKEEISATQIIVCTPEKW-DIITRKGGERTYTQLVR 209
Query: 300 YLALDEADRMLDMG---FEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343
+ LDE + D E + + ++ ++M +R L SAT P
Sbjct: 210 LIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGL-SATLP 255
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 439 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 498
+++ERE L F++G+ +V++ V G+D+P V +Y+ R+GR R
Sbjct: 144 SREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRP 203
Query: 499 GK 500
K
Sbjct: 204 SK 205
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 17/153 (11%)
Query: 160 IRRCKYVKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218
I++ K P Q A+ + G L+ + TGSGKT IIS +++ G
Sbjct: 23 IKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-------NG 75
Query: 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILV 278
+ +Y + P R L+++ ++ K + G KV + G + + DI++
Sbjct: 76 GKAIY-----VTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDAWL---KNYDIII 126
Query: 279 ATPGRLVDLLERARVSLQMIRYLALDEADRMLD 311
T +L L L + Y LDE + D
Sbjct: 127 TTYEKLDSLWRHRPEWLNEVNYFVLDELHYLND 159
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga
Maritima
Length = 822
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
LV + + ++ L L G P ++ ++E E+ ++ + G I AT++A R
Sbjct: 477 VLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTI--ATNMAGR 534
Query: 467 GLDI---PHVAHVVNFDLPNDIDDYVHRI-----GRTGRAGKSGLATAFFN 509
G DI P VA + + RI GR GR G G + F +
Sbjct: 535 GTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLS 585
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|B Chain B, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 871
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAAR 466
LV + + ++ L L G P ++ ++E E+ ++ + G I AT++A R
Sbjct: 477 VLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTI--ATNMAGR 534
Query: 467 GLDI---PHVAHVVNFDLPNDIDDYVHRI-----GRTGRAGKSGLATAFFN 509
G DI P VA + + RI GR GR G G + F +
Sbjct: 535 GTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLS 585
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 185 LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244
+ A QTGSGKT ++ ++ ++ PR + L + L +HV
Sbjct: 87 VFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKL---IDENDLLDCLVHVSYL 143
Query: 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQM 297
+ Y+ + ++ G A + QLRE ERG +L V+ L+ L+M
Sbjct: 144 EV-YKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEM 195
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 185 LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244
+ A QTGSGKT ++ ++ ++ PR + L + L +HV
Sbjct: 87 VFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKL---IDENDLLDCLVHVSYL 143
Query: 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQM 297
+ Y+ + ++ G A + QLRE ERG +L V+ L+ L+M
Sbjct: 144 EV-YKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEM 195
>pdb|1CF2|P Chain P, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|R Chain R, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|O Chain O, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|Q Chain Q, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
Length = 337
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 302
A + Q +KV+ P + L++G D+ VA P R V L E+A + +
Sbjct: 17 ADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPER-VKLFEKAGIEVAGTVDDM 75
Query: 303 LDEADRMLD 311
LDEAD ++D
Sbjct: 76 LDEADIVID 84
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 435 HGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVV-----NFDLPNDIDDYV 489
HG ++E E + F + +LV T + G+DIP ++ +F L +
Sbjct: 845 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ-----L 899
Query: 490 HRI-GRTGRAGKSGLA 504
H++ GR GR+ A
Sbjct: 900 HQLRGRVGRSHHQAYA 915
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,072,924
Number of Sequences: 62578
Number of extensions: 635292
Number of successful extensions: 1657
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1364
Number of HSP's gapped (non-prelim): 129
length of query: 609
length of database: 14,973,337
effective HSP length: 105
effective length of query: 504
effective length of database: 8,402,647
effective search space: 4234934088
effective search space used: 4234934088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)