Query 007280
Match_columns 609
No_of_seqs 494 out of 3226
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 21:26:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0335 ATP-dependent RNA heli 100.0 5.1E-88 1.1E-92 692.4 37.6 429 113-541 42-474 (482)
2 KOG0331 ATP-dependent RNA heli 100.0 6.5E-84 1.4E-88 673.7 43.6 389 145-544 91-481 (519)
3 PTZ00110 helicase; Provisional 100.0 1.2E-74 2.6E-79 635.4 53.1 401 128-543 114-516 (545)
4 KOG0339 ATP-dependent RNA heli 100.0 5.5E-76 1.2E-80 591.4 37.8 394 132-540 210-604 (731)
5 KOG0333 U5 snRNP-like RNA heli 100.0 5.4E-76 1.2E-80 594.7 35.0 403 129-539 229-653 (673)
6 KOG0330 ATP-dependent RNA heli 100.0 3.9E-76 8.5E-81 577.4 31.8 366 143-529 59-425 (476)
7 KOG0336 ATP-dependent RNA heli 100.0 7.5E-76 1.6E-80 576.8 30.7 390 137-541 211-602 (629)
8 KOG0341 DEAD-box protein abstr 100.0 2.3E-75 5.1E-80 569.7 19.3 393 133-539 158-557 (610)
9 COG0513 SrmB Superfamily II DN 100.0 5.6E-71 1.2E-75 600.8 40.4 373 145-536 29-409 (513)
10 KOG0328 Predicted ATP-dependen 100.0 2E-71 4.2E-76 522.5 28.8 375 141-536 23-398 (400)
11 KOG0338 ATP-dependent RNA heli 100.0 3.8E-71 8.3E-76 557.3 29.0 361 144-522 180-544 (691)
12 KOG0342 ATP-dependent RNA heli 100.0 8.5E-70 1.9E-74 548.0 33.2 365 142-522 79-448 (543)
13 PLN00206 DEAD-box ATP-dependen 100.0 3.2E-68 6.9E-73 583.0 43.6 395 131-538 107-502 (518)
14 PRK10590 ATP-dependent RNA hel 100.0 5.4E-67 1.2E-71 566.5 44.7 366 146-526 2-367 (456)
15 KOG0334 RNA helicase [RNA proc 100.0 1.6E-67 3.5E-72 575.5 32.6 417 133-564 353-775 (997)
16 KOG0340 ATP-dependent RNA heli 100.0 2E-67 4.3E-72 510.4 28.7 370 144-531 6-381 (442)
17 PRK04537 ATP-dependent RNA hel 100.0 4.1E-65 8.9E-70 561.7 47.0 370 145-526 9-379 (572)
18 KOG0348 ATP-dependent RNA heli 100.0 3.3E-66 7.2E-71 524.4 31.4 378 138-522 129-565 (708)
19 PRK04837 ATP-dependent RNA hel 100.0 1.4E-64 3E-69 544.0 41.7 373 143-527 6-378 (423)
20 KOG0345 ATP-dependent RNA heli 100.0 3.5E-65 7.7E-70 510.9 33.6 356 146-517 5-370 (567)
21 PRK11634 ATP-dependent RNA hel 100.0 9E-64 1.9E-68 553.9 40.7 357 144-521 5-362 (629)
22 KOG0343 RNA Helicase [RNA proc 100.0 1.6E-64 3.5E-69 513.5 31.5 360 143-520 67-432 (758)
23 KOG0326 ATP-dependent RNA heli 100.0 1.2E-65 2.6E-70 490.8 19.4 370 144-535 84-453 (459)
24 PRK11776 ATP-dependent RNA hel 100.0 3.8E-63 8.3E-68 538.5 39.9 360 145-526 4-364 (460)
25 PRK11192 ATP-dependent RNA hel 100.0 4.1E-61 9E-66 519.3 41.5 364 146-526 2-367 (434)
26 PRK01297 ATP-dependent RNA hel 100.0 1.2E-59 2.6E-64 512.5 45.5 382 142-535 84-468 (475)
27 KOG0346 RNA helicase [RNA proc 100.0 9.6E-61 2.1E-65 474.9 31.3 367 145-525 19-424 (569)
28 KOG0347 RNA helicase [RNA proc 100.0 1.1E-61 2.4E-66 492.9 22.5 378 140-525 176-584 (731)
29 PTZ00424 helicase 45; Provisio 100.0 1.4E-57 3.1E-62 487.8 38.1 368 144-532 27-395 (401)
30 KOG0344 ATP-dependent RNA heli 100.0 1E-58 2.2E-63 478.5 27.6 394 131-539 118-523 (593)
31 KOG0327 Translation initiation 100.0 1.9E-58 4E-63 454.9 25.4 370 144-536 25-395 (397)
32 KOG0332 ATP-dependent RNA heli 100.0 6.1E-58 1.3E-62 446.7 28.2 376 140-539 85-473 (477)
33 KOG0337 ATP-dependent RNA heli 100.0 5.6E-57 1.2E-61 446.1 20.6 362 144-524 20-381 (529)
34 KOG4284 DEAD box protein [Tran 100.0 1.7E-54 3.6E-59 446.7 25.4 356 136-513 16-381 (980)
35 KOG0350 DEAD-box ATP-dependent 100.0 2.1E-53 4.6E-58 428.7 29.6 364 145-524 127-553 (620)
36 TIGR03817 DECH_helic helicase/ 100.0 1E-52 2.2E-57 474.6 36.1 353 151-525 20-402 (742)
37 PLN03137 ATP-dependent DNA hel 100.0 4E-49 8.6E-54 441.9 36.8 337 151-520 443-796 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 8E-49 1.7E-53 425.9 34.9 328 161-521 5-343 (470)
39 KOG0329 ATP-dependent RNA heli 100.0 3.5E-50 7.6E-55 373.7 15.9 345 135-534 32-379 (387)
40 PRK11057 ATP-dependent DNA hel 100.0 4.5E-47 9.8E-52 422.7 35.6 325 162-520 20-352 (607)
41 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.4E-47 1.2E-51 419.7 35.8 320 163-510 12-390 (844)
42 PRK13767 ATP-dependent helicas 100.0 1.2E-46 2.5E-51 433.5 35.1 343 152-509 18-396 (876)
43 TIGR01389 recQ ATP-dependent D 100.0 6E-46 1.3E-50 414.9 34.4 325 162-520 8-340 (591)
44 PRK02362 ski2-like helicase; P 100.0 5.6E-46 1.2E-50 424.0 31.3 340 146-511 2-397 (737)
45 PRK00254 ski2-like helicase; P 100.0 9.6E-45 2.1E-49 412.9 33.4 340 146-512 2-389 (720)
46 TIGR00580 mfd transcription-re 100.0 3.8E-43 8.3E-48 400.1 38.8 322 152-512 436-771 (926)
47 PRK10917 ATP-dependent DNA hel 100.0 2.4E-42 5.1E-47 388.9 40.4 333 157-527 252-605 (681)
48 PRK10689 transcription-repair 100.0 2.1E-42 4.5E-47 402.1 38.5 319 154-511 588-919 (1147)
49 PRK01172 ski2-like helicase; P 100.0 7.8E-43 1.7E-47 395.5 31.6 339 146-511 2-378 (674)
50 TIGR00643 recG ATP-dependent D 100.0 1.4E-41 3E-46 380.3 40.7 341 154-529 223-584 (630)
51 COG1201 Lhr Lhr-like helicases 100.0 2.7E-42 5.8E-47 380.4 32.8 345 151-510 7-361 (814)
52 PRK09751 putative ATP-dependen 100.0 3.9E-42 8.5E-47 401.2 32.9 310 187-505 1-379 (1490)
53 PRK09401 reverse gyrase; Revie 100.0 2.4E-41 5.1E-46 394.1 36.1 302 163-498 77-431 (1176)
54 PHA02653 RNA helicase NPH-II; 100.0 7.6E-42 1.6E-46 377.2 28.6 314 170-513 167-516 (675)
55 KOG0349 Putative DEAD-box RNA 100.0 2.3E-42 5E-47 342.4 19.9 286 224-509 287-613 (725)
56 COG0514 RecQ Superfamily II DN 100.0 4.4E-41 9.5E-46 358.5 28.3 330 162-523 12-349 (590)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.5E-40 3.2E-45 375.4 31.5 308 171-513 6-338 (819)
58 PRK14701 reverse gyrase; Provi 100.0 2.1E-40 4.6E-45 393.4 30.0 326 155-512 67-457 (1638)
59 PRK12898 secA preprotein trans 100.0 1.8E-39 3.9E-44 352.8 32.0 322 166-513 102-588 (656)
60 PRK11664 ATP-dependent RNA hel 100.0 9.8E-40 2.1E-44 369.6 28.5 306 172-512 10-340 (812)
61 COG1111 MPH1 ERCC4-like helica 100.0 6.6E-38 1.4E-42 319.7 35.5 327 165-514 13-484 (542)
62 TIGR01054 rgy reverse gyrase. 100.0 1.7E-38 3.7E-43 370.7 33.2 297 155-484 66-410 (1171)
63 TIGR01587 cas3_core CRISPR-ass 100.0 1.4E-38 3E-43 335.6 26.9 302 184-513 1-338 (358)
64 PHA02558 uvsW UvsW helicase; P 100.0 7.4E-38 1.6E-42 341.9 28.4 302 165-502 112-443 (501)
65 PRK09200 preprotein translocas 100.0 2.8E-37 6E-42 342.6 31.1 324 164-513 76-543 (790)
66 TIGR03714 secA2 accessory Sec 100.0 1.3E-36 2.9E-41 334.0 31.1 323 168-513 69-539 (762)
67 TIGR00963 secA preprotein tran 100.0 2.4E-36 5.3E-41 329.8 31.0 322 166-513 55-519 (745)
68 PRK13766 Hef nuclease; Provisi 100.0 2E-35 4.4E-40 341.0 38.3 327 165-513 13-481 (773)
69 COG1202 Superfamily II helicas 100.0 1.6E-36 3.5E-41 310.9 24.0 345 146-510 195-552 (830)
70 PRK11131 ATP-dependent RNA hel 100.0 4.7E-36 1E-40 344.7 26.9 304 172-513 79-413 (1294)
71 TIGR03158 cas3_cyano CRISPR-as 100.0 6.3E-35 1.4E-39 305.4 29.4 296 171-496 1-357 (357)
72 COG1204 Superfamily II helicas 100.0 2.7E-35 5.8E-40 329.5 28.1 336 151-510 15-407 (766)
73 KOG0354 DEAD-box like helicase 100.0 5.4E-35 1.2E-39 315.0 28.4 336 152-510 47-528 (746)
74 KOG0352 ATP-dependent DNA heli 100.0 7.3E-35 1.6E-39 289.1 20.3 333 163-520 15-371 (641)
75 KOG0351 ATP-dependent DNA heli 100.0 4.1E-34 9E-39 321.8 27.0 337 154-521 251-602 (941)
76 COG1205 Distinct helicase fami 100.0 2.9E-33 6.3E-38 317.4 33.0 338 152-509 55-420 (851)
77 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.4E-33 3.1E-38 325.5 25.3 314 163-513 60-406 (1283)
78 KOG0952 DNA/RNA helicase MER3/ 100.0 8.2E-33 1.8E-37 300.7 28.9 344 161-518 104-498 (1230)
79 TIGR00603 rad25 DNA repair hel 100.0 5.3E-33 1.1E-37 305.7 27.0 320 166-526 254-624 (732)
80 PRK05580 primosome assembly pr 100.0 1.8E-31 4E-36 299.5 34.5 317 167-517 144-555 (679)
81 PRK04914 ATP-dependent helicas 100.0 5.3E-32 1.2E-36 307.6 30.2 333 167-525 152-617 (956)
82 COG1200 RecG RecG-like helicas 100.0 8.9E-31 1.9E-35 278.6 33.8 331 161-528 257-608 (677)
83 KOG0353 ATP-dependent DNA heli 100.0 9.6E-31 2.1E-35 256.2 25.7 342 150-518 76-474 (695)
84 PRK09694 helicase Cas3; Provis 100.0 1.6E-29 3.4E-34 285.9 35.9 313 165-500 284-664 (878)
85 cd00268 DEADc DEAD-box helicas 100.0 3.2E-30 6.8E-35 249.8 24.3 202 147-360 1-202 (203)
86 PRK13104 secA preprotein trans 100.0 6.6E-29 1.4E-33 275.1 32.5 321 167-513 82-589 (896)
87 PRK12899 secA preprotein trans 100.0 1.1E-28 2.4E-33 272.6 34.1 148 148-310 65-228 (970)
88 TIGR00595 priA primosomal prot 100.0 4.1E-29 8.8E-34 271.1 29.8 290 186-510 1-380 (505)
89 COG1061 SSL2 DNA or RNA helica 100.0 2.8E-29 6.1E-34 269.2 23.4 302 166-503 35-382 (442)
90 PRK12904 preprotein translocas 100.0 2E-28 4.3E-33 271.3 30.0 321 167-513 81-575 (830)
91 PRK12906 secA preprotein trans 100.0 8.4E-28 1.8E-32 265.3 28.7 322 166-513 79-555 (796)
92 COG1197 Mfd Transcription-repa 100.0 1.5E-26 3.2E-31 259.2 33.2 308 167-512 594-914 (1139)
93 KOG0947 Cytoplasmic exosomal R 100.0 2.2E-27 4.7E-32 255.8 25.3 308 167-511 297-723 (1248)
94 KOG0951 RNA helicase BRR2, DEA 100.0 2.7E-27 5.9E-32 260.7 25.6 351 151-513 295-704 (1674)
95 COG1643 HrpA HrpA-like helicas 100.0 1.1E-27 2.3E-32 267.0 21.0 334 171-535 54-413 (845)
96 PLN03142 Probable chromatin-re 100.0 1.6E-26 3.5E-31 263.8 29.3 315 167-508 169-594 (1033)
97 COG4098 comFA Superfamily II D 100.0 1.2E-25 2.7E-30 218.7 30.1 313 167-521 97-426 (441)
98 PRK11448 hsdR type I restricti 100.0 1.9E-26 4.2E-31 268.0 28.0 310 166-499 412-801 (1123)
99 PRK13107 preprotein translocas 99.9 9E-26 1.9E-30 249.5 28.3 321 167-513 82-593 (908)
100 KOG0948 Nuclear exosomal RNA h 99.9 6.8E-27 1.5E-31 246.4 17.5 309 167-511 129-539 (1041)
101 KOG0920 ATP-dependent RNA heli 99.9 2.5E-26 5.4E-31 254.9 22.5 334 168-529 174-565 (924)
102 PF00270 DEAD: DEAD/DEAH box h 99.9 2.2E-26 4.9E-31 215.8 18.7 168 169-349 1-169 (169)
103 KOG0922 DEAH-box RNA helicase 99.9 3E-26 6.4E-31 241.7 20.2 309 171-513 55-392 (674)
104 COG4581 Superfamily II RNA hel 99.9 5.2E-25 1.1E-29 246.9 26.1 322 161-509 114-535 (1041)
105 KOG0950 DNA polymerase theta/e 99.9 1.8E-25 3.8E-30 243.1 21.5 345 151-519 207-619 (1008)
106 KOG0924 mRNA splicing factor A 99.9 3E-25 6.4E-30 231.7 18.5 308 171-510 360-696 (1042)
107 KOG0923 mRNA splicing factor A 99.9 3.9E-25 8.5E-30 230.6 19.3 315 164-509 262-604 (902)
108 KOG0385 Chromatin remodeling c 99.9 3.1E-23 6.7E-28 219.9 27.3 318 167-511 167-599 (971)
109 COG1203 CRISPR-associated heli 99.9 5.1E-23 1.1E-27 233.6 24.6 327 168-514 196-553 (733)
110 KOG0926 DEAH-box RNA helicase 99.9 4.3E-23 9.3E-28 219.0 16.8 311 175-510 264-703 (1172)
111 PRK12900 secA preprotein trans 99.9 2.8E-22 6.1E-27 222.6 23.1 141 380-527 579-731 (1025)
112 TIGR00631 uvrb excinuclease AB 99.9 3.6E-21 7.7E-26 214.0 29.6 135 382-522 425-564 (655)
113 KOG0387 Transcription-coupled 99.9 7.9E-22 1.7E-26 210.4 21.5 314 167-507 205-652 (923)
114 COG1110 Reverse gyrase [DNA re 99.9 8E-21 1.7E-25 208.0 28.9 288 160-482 75-416 (1187)
115 TIGR01407 dinG_rel DnaQ family 99.9 1.2E-20 2.7E-25 218.5 30.1 349 152-523 231-828 (850)
116 KOG0384 Chromodomain-helicase 99.9 7.1E-21 1.5E-25 211.1 21.9 317 167-511 370-811 (1373)
117 COG0556 UvrB Helicase subunit 99.9 3.7E-20 8E-25 190.3 25.2 170 333-515 387-561 (663)
118 PRK05298 excinuclease ABC subu 99.9 6.1E-20 1.3E-24 205.7 27.2 147 382-534 429-589 (652)
119 KOG0925 mRNA splicing factor A 99.9 1.5E-20 3.2E-25 190.5 19.4 331 144-511 24-387 (699)
120 PRK12326 preprotein translocas 99.9 3.4E-19 7.4E-24 193.2 29.9 320 166-512 77-548 (764)
121 COG4096 HsdR Type I site-speci 99.9 1.2E-20 2.5E-25 204.0 18.4 299 167-498 165-525 (875)
122 TIGR00348 hsdR type I site-spe 99.9 9.7E-20 2.1E-24 204.9 26.5 303 168-498 239-634 (667)
123 smart00487 DEXDc DEAD-like hel 99.9 5.5E-20 1.2E-24 176.1 21.0 186 163-363 4-191 (201)
124 KOG0389 SNF2 family DNA-depend 99.8 1.3E-19 2.8E-24 193.3 24.1 319 168-512 400-889 (941)
125 COG1198 PriA Primosomal protei 99.8 3E-19 6.4E-24 197.0 27.9 316 167-517 198-609 (730)
126 KOG0390 DNA repair protein, SN 99.8 3.3E-18 7.3E-23 187.5 29.7 322 167-508 238-702 (776)
127 KOG1123 RNA polymerase II tran 99.8 5.2E-19 1.1E-23 179.8 17.4 296 165-500 300-636 (776)
128 PRK13103 secA preprotein trans 99.8 5.6E-18 1.2E-22 188.2 26.1 321 166-513 81-593 (913)
129 KOG0392 SNF2 family DNA-depend 99.8 2.1E-18 4.5E-23 191.0 22.3 328 168-511 976-1454(1549)
130 KOG0949 Predicted helicase, DE 99.8 1.3E-18 2.9E-23 188.8 19.9 158 167-343 511-672 (1330)
131 PRK12903 secA preprotein trans 99.8 3.7E-17 8E-22 179.8 28.7 320 167-513 78-541 (925)
132 PRK07246 bifunctional ATP-depe 99.8 2.8E-17 6.1E-22 188.1 28.7 328 167-523 245-797 (820)
133 KOG1000 Chromatin remodeling p 99.8 5.3E-17 1.1E-21 165.3 23.8 316 166-509 197-599 (689)
134 CHL00122 secA preprotein trans 99.8 1.4E-16 3E-21 176.4 25.7 280 167-471 76-491 (870)
135 cd00079 HELICc Helicase superf 99.7 2E-17 4.2E-22 147.9 13.1 120 383-507 12-131 (131)
136 KOG4150 Predicted ATP-dependen 99.7 6E-17 1.3E-21 166.9 15.7 335 157-509 276-638 (1034)
137 PF00271 Helicase_C: Helicase 99.7 1.7E-17 3.7E-22 134.4 9.0 78 422-499 1-78 (78)
138 TIGR03117 cas_csf4 CRISPR-asso 99.7 8.6E-15 1.9E-19 160.8 32.5 119 404-524 470-630 (636)
139 COG4889 Predicted helicase [Ge 99.7 1.1E-16 2.5E-21 171.8 15.9 358 155-528 149-618 (1518)
140 PRK12902 secA preprotein trans 99.7 6.5E-15 1.4E-19 162.9 28.2 280 167-471 85-506 (939)
141 PRK08074 bifunctional ATP-depe 99.7 5.4E-15 1.2E-19 172.4 29.0 120 404-523 752-907 (928)
142 KOG0386 Chromatin remodeling c 99.7 2.5E-16 5.4E-21 172.3 15.5 317 167-509 394-834 (1157)
143 cd00046 DEXDc DEAD-like helica 99.7 8E-16 1.7E-20 138.4 16.3 144 183-342 1-144 (144)
144 KOG0388 SNF2 family DNA-depend 99.7 5E-15 1.1E-19 156.2 21.2 122 381-507 1026-1148(1185)
145 KOG0391 SNF2 family DNA-depend 99.7 8.2E-15 1.8E-19 161.3 23.4 105 403-507 1275-1381(1958)
146 PF06862 DUF1253: Protein of u 99.6 2E-13 4.2E-18 143.0 28.9 297 221-520 35-424 (442)
147 KOG0953 Mitochondrial RNA heli 99.6 5.5E-15 1.2E-19 152.9 15.9 268 183-511 192-477 (700)
148 KOG1002 Nucleotide excision re 99.6 6.4E-14 1.4E-18 142.8 21.9 128 382-512 619-750 (791)
149 PF04851 ResIII: Type III rest 99.6 7.7E-15 1.7E-19 139.1 11.6 152 167-343 3-183 (184)
150 KOG0951 RNA helicase BRR2, DEA 99.6 3.9E-14 8.4E-19 157.9 17.6 319 165-518 1141-1501(1674)
151 KOG4439 RNA polymerase II tran 99.6 1.2E-13 2.5E-18 146.5 19.6 120 384-507 730-852 (901)
152 smart00490 HELICc helicase sup 99.6 9.3E-15 2E-19 119.0 8.6 81 419-499 2-82 (82)
153 COG1199 DinG Rad3-related DNA 99.6 9.8E-13 2.1E-17 149.7 27.2 118 404-524 479-632 (654)
154 TIGR00604 rad3 DNA repair heli 99.6 2.2E-12 4.8E-17 147.2 29.6 127 404-540 522-694 (705)
155 PRK12901 secA preprotein trans 99.5 4.4E-13 9.6E-18 150.0 21.4 126 380-513 609-743 (1112)
156 KOG0921 Dosage compensation co 99.5 2.1E-14 4.5E-19 155.2 10.5 315 174-509 385-772 (1282)
157 PRK11747 dinG ATP-dependent DN 99.5 6E-12 1.3E-16 142.6 30.8 104 404-510 534-673 (697)
158 COG0553 HepA Superfamily II DN 99.5 9.4E-13 2E-17 155.2 24.9 123 383-510 692-819 (866)
159 KOG2340 Uncharacterized conser 99.5 8.2E-13 1.8E-17 136.1 19.6 352 165-520 214-677 (698)
160 TIGR02562 cas3_yersinia CRISPR 99.5 1E-12 2.2E-17 147.9 20.5 91 407-500 759-881 (1110)
161 PRK14873 primosome assembly pr 99.5 1.4E-12 3.1E-17 145.2 19.0 287 186-512 164-540 (665)
162 PF02399 Herpes_ori_bp: Origin 99.5 7.4E-12 1.6E-16 137.7 22.3 293 183-510 50-387 (824)
163 KOG1015 Transcription regulato 99.4 5E-12 1.1E-16 137.5 20.2 119 384-507 1127-1271(1567)
164 PF00176 SNF2_N: SNF2 family N 99.3 4.1E-11 8.8E-16 123.0 13.7 156 171-342 1-172 (299)
165 COG0610 Type I site-specific r 99.2 2.8E-09 6E-14 124.3 26.9 301 183-509 274-651 (962)
166 COG0653 SecA Preprotein transl 99.1 1.7E-09 3.7E-14 120.1 18.7 321 168-512 79-546 (822)
167 PF07652 Flavi_DEAD: Flaviviru 99.1 2.5E-10 5.4E-15 100.7 9.0 135 182-346 4-140 (148)
168 smart00488 DEXDc2 DEAD-like he 99.1 9.7E-10 2.1E-14 111.7 13.9 73 167-246 8-84 (289)
169 smart00489 DEXDc3 DEAD-like he 99.1 9.7E-10 2.1E-14 111.7 13.9 73 167-246 8-84 (289)
170 PF07517 SecA_DEAD: SecA DEAD- 98.9 1.5E-08 3.2E-13 100.5 14.4 130 164-310 74-210 (266)
171 PRK15483 type III restriction- 98.9 3.1E-07 6.7E-12 104.6 26.1 73 454-526 501-583 (986)
172 TIGR00596 rad1 DNA repair prot 98.8 1.5E-07 3.2E-12 107.1 19.1 66 273-342 7-72 (814)
173 KOG1016 Predicted DNA helicase 98.8 1.2E-07 2.7E-12 102.0 15.8 107 404-510 719-846 (1387)
174 KOG1001 Helicase-like transcri 98.8 1.1E-07 2.3E-12 106.0 15.0 102 405-506 540-643 (674)
175 COG3587 Restriction endonuclea 98.6 3.2E-06 7E-11 93.0 19.2 72 453-524 482-566 (985)
176 KOG0952 DNA/RNA helicase MER3/ 98.4 6E-08 1.3E-12 108.1 1.0 147 166-327 926-1075(1230)
177 KOG1802 RNA helicase nonsense 98.4 6.3E-06 1.4E-10 88.2 14.9 84 159-258 402-485 (935)
178 PF13086 AAA_11: AAA domain; P 98.2 7E-06 1.5E-10 80.6 10.6 74 167-245 1-75 (236)
179 PF13307 Helicase_C_2: Helicas 98.1 5.3E-06 1.1E-10 77.4 7.3 105 404-510 9-149 (167)
180 PF13604 AAA_30: AAA domain; P 98.1 8.5E-06 1.8E-10 78.1 8.9 124 167-341 1-130 (196)
181 PF13872 AAA_34: P-loop contai 98.1 1.9E-05 4.1E-10 78.8 11.4 173 148-348 24-226 (303)
182 PF12340 DUF3638: Protein of u 98.1 5.7E-05 1.2E-09 72.8 12.4 151 146-311 4-186 (229)
183 PF02562 PhoH: PhoH-like prote 98.0 4.4E-06 9.5E-11 79.7 4.6 145 166-341 3-155 (205)
184 TIGR00376 DNA helicase, putati 97.9 0.00056 1.2E-08 77.2 19.9 67 166-245 156-223 (637)
185 KOG1132 Helicase of the DEAD s 97.9 9.5E-05 2.1E-09 82.2 12.0 142 167-311 21-261 (945)
186 PF09848 DUF2075: Uncharacteri 97.9 4.5E-05 9.7E-10 80.2 8.9 108 184-324 3-117 (352)
187 PRK10875 recD exonuclease V su 97.8 0.00017 3.8E-09 80.4 12.1 143 168-341 153-301 (615)
188 KOG1803 DNA helicase [Replicat 97.8 9.9E-05 2.1E-09 79.0 9.3 64 167-243 185-249 (649)
189 PRK13889 conjugal transfer rel 97.7 0.00031 6.8E-09 81.9 13.9 124 167-341 346-470 (988)
190 TIGR01447 recD exodeoxyribonuc 97.7 0.0003 6.6E-09 78.3 13.2 143 169-341 147-295 (586)
191 TIGR01448 recD_rel helicase, p 97.6 0.00045 9.8E-09 79.1 13.1 64 166-240 322-385 (720)
192 PRK10536 hypothetical protein; 97.6 0.0016 3.5E-08 64.1 15.0 60 164-234 56-115 (262)
193 PF13245 AAA_19: Part of AAA d 97.5 0.00039 8.4E-09 55.5 6.6 60 175-243 2-62 (76)
194 PF13401 AAA_22: AAA domain; P 97.3 0.00083 1.8E-08 59.5 8.3 17 182-198 4-20 (131)
195 PF14617 CMS1: U3-containing 9 97.3 0.0005 1.1E-08 67.6 6.4 86 222-308 125-212 (252)
196 COG3421 Uncharacterized protei 97.2 0.0018 3.8E-08 69.4 10.1 73 272-345 80-168 (812)
197 PRK14722 flhF flagellar biosyn 97.1 0.0054 1.2E-07 64.2 12.6 133 182-354 137-270 (374)
198 KOG1805 DNA replication helica 97.1 0.0022 4.8E-08 72.3 10.0 136 151-311 657-810 (1100)
199 PRK08181 transposase; Validate 97.1 0.0038 8.2E-08 62.6 10.8 30 169-198 89-122 (269)
200 PRK13826 Dtr system oriT relax 97.1 0.0083 1.8E-07 70.8 15.0 125 166-341 380-505 (1102)
201 COG1875 NYN ribonuclease and A 97.1 0.004 8.6E-08 63.4 10.6 146 163-339 224-385 (436)
202 KOG0383 Predicted helicase [Ge 97.1 2.9E-05 6.2E-10 85.9 -5.1 65 402-467 629-696 (696)
203 PRK12723 flagellar biosynthesi 97.1 0.022 4.8E-07 60.2 16.5 132 183-353 175-309 (388)
204 PF05970 PIF1: PIF1-like helic 97.0 0.0023 5E-08 67.6 8.8 60 167-239 1-66 (364)
205 KOG1131 RNA polymerase II tran 96.9 0.0057 1.2E-07 64.5 10.5 46 164-209 13-62 (755)
206 TIGR02768 TraA_Ti Ti-type conj 96.9 0.0048 1E-07 71.1 11.1 123 166-339 351-474 (744)
207 smart00492 HELICc3 helicase su 96.9 0.0067 1.5E-07 54.7 9.7 73 437-509 30-136 (141)
208 cd00009 AAA The AAA+ (ATPases 96.9 0.0092 2E-07 53.2 10.6 16 182-197 19-34 (151)
209 PRK04296 thymidine kinase; Pro 96.9 0.0026 5.7E-08 60.6 7.2 40 279-325 63-102 (190)
210 KOG0921 Dosage compensation co 96.9 0.0018 3.9E-08 72.1 6.4 46 167-212 406-451 (1282)
211 PF00580 UvrD-helicase: UvrD/R 96.8 0.0024 5.3E-08 65.6 7.1 123 168-307 1-125 (315)
212 KOG0298 DEAD box-containing he 96.8 0.0037 8E-08 72.4 8.6 153 182-343 374-551 (1394)
213 smart00491 HELICc2 helicase su 96.8 0.007 1.5E-07 54.7 8.7 70 441-510 31-138 (142)
214 PRK14974 cell division protein 96.8 0.019 4.1E-07 59.5 12.9 56 296-355 221-277 (336)
215 PRK06526 transposase; Provisio 96.8 0.0039 8.4E-08 62.2 7.5 24 177-200 93-116 (254)
216 COG1419 FlhF Flagellar GTP-bin 96.7 0.039 8.5E-07 57.6 14.8 131 182-353 203-335 (407)
217 PRK06921 hypothetical protein; 96.7 0.017 3.8E-07 58.0 12.1 27 182-209 117-143 (266)
218 PRK06893 DNA replication initi 96.7 0.0045 9.7E-08 60.9 7.7 47 295-344 89-136 (229)
219 PRK14086 dnaA chromosomal repl 96.7 0.0042 9.1E-08 68.7 7.8 52 295-349 375-427 (617)
220 PF13871 Helicase_C_4: Helicas 96.7 0.006 1.3E-07 60.9 8.2 80 445-524 52-143 (278)
221 PRK05703 flhF flagellar biosyn 96.7 0.052 1.1E-06 58.3 16.0 130 182-353 221-354 (424)
222 PRK07764 DNA polymerase III su 96.7 0.015 3.3E-07 67.3 12.6 40 295-339 118-157 (824)
223 PRK07952 DNA replication prote 96.7 0.017 3.6E-07 57.2 11.1 50 295-347 160-210 (244)
224 PRK08116 hypothetical protein; 96.6 0.038 8.1E-07 55.7 13.6 50 295-348 176-227 (268)
225 PRK11634 ATP-dependent RNA hel 96.6 1.6 3.6E-05 49.5 28.1 68 226-303 248-319 (629)
226 PRK05642 DNA replication initi 96.6 0.0062 1.3E-07 60.1 7.7 45 295-343 95-140 (234)
227 KOG0701 dsRNA-specific nucleas 96.5 0.003 6.5E-08 76.0 5.7 94 405-498 293-398 (1606)
228 PF05621 TniB: Bacterial TniB 96.5 0.029 6.3E-07 56.5 11.5 55 183-243 62-116 (302)
229 PRK08727 hypothetical protein; 96.5 0.0092 2E-07 58.9 8.0 49 295-346 91-140 (233)
230 PRK12377 putative replication 96.4 0.021 4.6E-07 56.6 10.3 46 182-241 101-146 (248)
231 TIGR02760 TraI_TIGR conjugativ 96.4 0.12 2.5E-06 65.7 19.1 136 167-341 429-566 (1960)
232 smart00382 AAA ATPases associa 96.4 0.0073 1.6E-07 53.3 6.3 17 182-198 2-18 (148)
233 PRK06835 DNA replication prote 96.3 0.035 7.5E-07 57.5 11.5 50 295-347 244-294 (329)
234 cd01120 RecA-like_NTPases RecA 96.3 0.022 4.9E-07 52.0 9.3 18 295-312 83-100 (165)
235 PRK08084 DNA replication initi 96.3 0.0098 2.1E-07 58.7 7.2 28 298-325 98-126 (235)
236 TIGR01075 uvrD DNA helicase II 96.3 0.021 4.5E-07 66.0 10.4 109 166-308 3-114 (715)
237 PRK11773 uvrD DNA-dependent he 96.2 0.022 4.7E-07 65.9 10.4 109 166-308 8-119 (721)
238 PRK07003 DNA polymerase III su 96.2 0.023 4.9E-07 64.0 9.9 52 436-495 242-295 (830)
239 PF00448 SRP54: SRP54-type pro 96.2 0.024 5.2E-07 54.2 8.9 133 184-354 3-137 (196)
240 PRK11331 5-methylcytosine-spec 96.2 0.041 8.9E-07 58.7 11.1 32 168-199 180-211 (459)
241 PF00308 Bac_DnaA: Bacterial d 96.1 0.015 3.3E-07 56.6 7.0 50 295-347 95-145 (219)
242 PRK10919 ATP-dependent DNA hel 96.0 0.02 4.3E-07 65.5 8.6 70 167-247 2-71 (672)
243 KOG0989 Replication factor C, 96.0 0.023 4.9E-07 56.7 7.7 56 293-353 125-183 (346)
244 PRK00149 dnaA chromosomal repl 96.0 0.022 4.8E-07 62.0 8.6 51 296-349 210-261 (450)
245 PRK12422 chromosomal replicati 96.0 0.027 5.9E-07 60.9 9.1 56 295-353 200-256 (445)
246 PRK14087 dnaA chromosomal repl 95.9 0.025 5.5E-07 61.3 8.5 49 295-346 204-253 (450)
247 PRK12727 flagellar biosynthesi 95.9 0.43 9.4E-06 52.1 17.6 19 181-199 349-367 (559)
248 PRK05707 DNA polymerase III su 95.9 0.027 5.8E-07 58.4 8.2 41 167-208 3-47 (328)
249 PF05127 Helicase_RecD: Helica 95.9 0.0021 4.6E-08 59.9 -0.1 124 186-343 1-124 (177)
250 PHA02533 17 large terminase pr 95.8 0.033 7.1E-07 61.6 9.0 150 167-342 59-210 (534)
251 PRK07994 DNA polymerase III su 95.8 0.077 1.7E-06 59.6 11.9 17 185-201 41-57 (647)
252 COG1444 Predicted P-loop ATPas 95.8 0.052 1.1E-06 61.2 10.4 148 160-343 207-357 (758)
253 PRK12323 DNA polymerase III su 95.8 0.084 1.8E-06 58.8 11.8 41 295-340 122-162 (700)
254 PRK14721 flhF flagellar biosyn 95.8 0.28 6E-06 52.4 15.4 132 182-353 191-323 (420)
255 TIGR00362 DnaA chromosomal rep 95.7 0.023 4.9E-07 61.1 7.2 49 297-348 199-248 (405)
256 TIGR01074 rep ATP-dependent DN 95.7 0.058 1.3E-06 61.9 10.9 108 168-308 2-112 (664)
257 PRK14088 dnaA chromosomal repl 95.7 0.082 1.8E-06 57.3 11.1 52 297-351 194-246 (440)
258 PRK11054 helD DNA helicase IV; 95.7 0.04 8.8E-07 62.7 9.0 71 166-247 195-265 (684)
259 TIGR03420 DnaA_homol_Hda DnaA 95.6 0.045 9.8E-07 53.5 8.2 18 181-198 37-54 (226)
260 PRK11889 flhF flagellar biosyn 95.6 0.3 6.5E-06 51.4 14.2 131 183-354 242-375 (436)
261 TIGR02881 spore_V_K stage V sp 95.6 0.096 2.1E-06 52.6 10.6 17 183-199 43-59 (261)
262 PRK14964 DNA polymerase III su 95.5 0.097 2.1E-06 57.0 11.1 42 295-342 114-155 (491)
263 COG4371 Predicted membrane pro 95.5 0.022 4.7E-07 54.4 5.2 12 555-566 52-63 (334)
264 KOG0738 AAA+-type ATPase [Post 95.5 0.091 2E-06 54.1 9.8 65 298-362 305-381 (491)
265 PRK00411 cdc6 cell division co 95.5 0.094 2E-06 56.0 10.7 16 183-198 56-71 (394)
266 PRK14952 DNA polymerase III su 95.4 0.12 2.7E-06 57.5 11.7 40 295-339 116-155 (584)
267 cd01124 KaiC KaiC is a circadi 95.4 0.075 1.6E-06 50.1 8.7 48 185-246 2-49 (187)
268 TIGR01073 pcrA ATP-dependent D 95.4 0.058 1.3E-06 62.5 9.4 110 166-308 3-114 (726)
269 TIGR01547 phage_term_2 phage t 95.4 0.048 1E-06 58.4 8.1 147 184-354 3-152 (396)
270 PF00004 AAA: ATPase family as 95.4 0.14 3.1E-06 44.8 10.0 16 298-313 59-74 (132)
271 PRK14723 flhF flagellar biosyn 95.4 0.17 3.7E-06 57.7 12.6 68 280-354 250-318 (767)
272 TIGR02785 addA_Gpos recombinat 95.3 0.077 1.7E-06 64.9 10.5 124 167-308 1-126 (1232)
273 COG1484 DnaC DNA replication p 95.3 0.037 7.9E-07 55.3 6.5 49 181-243 104-152 (254)
274 PHA02544 44 clamp loader, smal 95.3 0.11 2.4E-06 53.7 10.4 40 297-341 100-139 (316)
275 PRK14960 DNA polymerase III su 95.3 0.098 2.1E-06 58.4 10.2 18 184-201 39-56 (702)
276 KOG1133 Helicase of the DEAD s 95.3 0.96 2.1E-05 50.1 17.3 123 404-539 629-798 (821)
277 PRK14950 DNA polymerase III su 95.3 0.19 4E-06 56.7 12.7 41 295-341 118-158 (585)
278 PRK00771 signal recognition pa 95.3 0.11 2.4E-06 55.9 10.4 53 298-354 176-229 (437)
279 PF13173 AAA_14: AAA domain 95.3 0.15 3.3E-06 45.0 9.8 38 297-341 61-98 (128)
280 PRK08691 DNA polymerase III su 95.3 0.098 2.1E-06 58.8 10.2 18 184-201 40-57 (709)
281 PRK09111 DNA polymerase III su 95.3 0.14 3E-06 57.5 11.4 40 295-339 130-169 (598)
282 PRK14959 DNA polymerase III su 95.3 0.11 2.3E-06 58.1 10.4 45 295-345 117-161 (624)
283 PRK05580 primosome assembly pr 95.3 0.12 2.7E-06 59.1 11.3 94 381-480 172-266 (679)
284 PRK14961 DNA polymerase III su 95.2 0.051 1.1E-06 57.4 7.7 39 295-338 117-155 (363)
285 PRK06995 flhF flagellar biosyn 95.2 0.21 4.5E-06 54.3 12.2 19 182-200 256-274 (484)
286 PRK14958 DNA polymerase III su 95.2 0.076 1.6E-06 58.5 9.1 39 296-339 118-156 (509)
287 PRK08769 DNA polymerase III su 95.2 0.15 3.3E-06 52.5 10.6 44 165-209 2-52 (319)
288 TIGR00595 priA primosomal prot 95.2 0.12 2.7E-06 56.8 10.6 94 381-480 7-101 (505)
289 PRK06731 flhF flagellar biosyn 95.2 0.68 1.5E-05 46.5 15.0 132 182-354 75-209 (270)
290 COG2805 PilT Tfp pilus assembl 95.2 0.058 1.3E-06 53.8 7.0 55 138-211 99-153 (353)
291 PRK14956 DNA polymerase III su 95.1 0.07 1.5E-06 57.6 8.1 17 185-201 43-59 (484)
292 cd01122 GP4d_helicase GP4d_hel 95.1 0.06 1.3E-06 54.3 7.3 22 179-200 27-48 (271)
293 PRK14873 primosome assembly pr 95.0 0.17 3.6E-06 57.5 11.3 94 381-480 170-265 (665)
294 PRK14949 DNA polymerase III su 95.0 0.066 1.4E-06 61.6 8.1 17 185-201 41-57 (944)
295 PTZ00293 thymidine kinase; Pro 95.0 0.13 2.8E-06 49.4 8.8 17 182-198 4-20 (211)
296 COG1474 CDC6 Cdc6-related prot 95.0 0.18 3.9E-06 53.1 10.8 29 295-324 121-149 (366)
297 PRK13709 conjugal transfer nic 95.0 0.21 4.6E-06 62.0 12.7 65 166-239 966-1032(1747)
298 PRK10917 ATP-dependent DNA hel 94.9 0.13 2.8E-06 59.0 10.4 75 404-478 310-389 (681)
299 PRK14955 DNA polymerase III su 94.9 0.54 1.2E-05 50.3 14.3 41 295-341 125-165 (397)
300 PRK14712 conjugal transfer nic 94.9 0.14 3.1E-06 62.7 10.7 64 167-239 835-900 (1623)
301 PRK08903 DnaA regulatory inact 94.8 0.12 2.6E-06 50.6 8.6 44 297-344 90-133 (227)
302 PRK14954 DNA polymerase III su 94.8 0.13 2.8E-06 57.8 9.5 40 295-339 125-164 (620)
303 PF06745 KaiC: KaiC; InterPro 94.8 0.08 1.7E-06 51.8 7.1 53 181-246 18-70 (226)
304 PRK05563 DNA polymerase III su 94.7 0.26 5.5E-06 55.1 11.7 43 295-343 117-159 (559)
305 PRK14957 DNA polymerase III su 94.7 0.17 3.7E-06 55.9 10.0 40 295-339 117-156 (546)
306 PRK14951 DNA polymerase III su 94.7 0.28 6.2E-06 55.0 11.8 43 295-343 122-164 (618)
307 PRK06645 DNA polymerase III su 94.7 0.42 9.2E-06 52.4 12.9 18 184-201 45-62 (507)
308 PF03354 Terminase_1: Phage Te 94.6 0.053 1.2E-06 59.5 6.0 71 170-249 1-80 (477)
309 PRK14969 DNA polymerase III su 94.6 0.2 4.3E-06 55.6 10.4 40 295-339 117-156 (527)
310 TIGR02928 orc1/cdc6 family rep 94.6 0.23 5.1E-06 52.4 10.6 16 183-198 41-56 (365)
311 PRK14962 DNA polymerase III su 94.6 0.38 8.2E-06 52.5 12.3 29 295-327 115-143 (472)
312 COG3973 Superfamily I DNA and 94.6 0.26 5.6E-06 53.7 10.6 88 153-247 191-284 (747)
313 PRK06871 DNA polymerase III su 94.5 0.18 3.8E-06 52.1 9.1 41 295-340 105-145 (325)
314 PRK09183 transposase/IS protei 94.5 0.19 4.2E-06 50.3 9.2 22 179-200 99-120 (259)
315 CHL00181 cbbX CbbX; Provisiona 94.5 0.3 6.5E-06 49.7 10.7 19 182-200 59-77 (287)
316 COG4962 CpaF Flp pilus assembl 94.5 0.069 1.5E-06 54.5 5.9 66 159-238 149-215 (355)
317 PRK12402 replication factor C 94.5 0.23 5.1E-06 51.6 10.2 16 184-199 38-53 (337)
318 COG1435 Tdk Thymidine kinase [ 94.3 0.33 7.1E-06 45.6 9.5 87 185-308 7-93 (201)
319 KOG3973 Uncharacterized conser 94.3 0.11 2.3E-06 52.1 6.5 30 153-182 5-34 (465)
320 cd00561 CobA_CobO_BtuR ATP:cor 94.3 0.34 7.4E-06 44.4 9.4 53 295-351 93-147 (159)
321 COG0593 DnaA ATPase involved i 94.2 0.23 4.9E-06 52.6 9.1 51 297-350 175-226 (408)
322 COG3972 Superfamily I DNA and 94.2 0.31 6.7E-06 51.8 9.9 141 155-308 151-306 (660)
323 cd01121 Sms Sms (bacterial rad 94.2 0.2 4.2E-06 52.9 8.7 52 181-246 81-132 (372)
324 PF13177 DNA_pol3_delta2: DNA 94.1 0.16 3.5E-06 46.9 7.0 42 296-342 101-142 (162)
325 PTZ00112 origin recognition co 94.0 0.44 9.6E-06 54.7 11.4 28 296-324 868-895 (1164)
326 PF05496 RuvB_N: Holliday junc 94.0 0.091 2E-06 50.7 5.3 15 184-198 52-66 (233)
327 TIGR02760 TraI_TIGR conjugativ 94.0 0.28 6.1E-06 62.5 10.9 63 166-239 1018-1084(1960)
328 PRK12726 flagellar biosynthesi 94.0 1.2 2.5E-05 46.9 13.6 19 182-200 206-224 (407)
329 PRK06964 DNA polymerase III su 94.0 0.54 1.2E-05 48.9 11.3 41 168-209 2-47 (342)
330 TIGR00643 recG ATP-dependent D 93.9 0.25 5.4E-06 56.3 9.6 75 404-478 284-363 (630)
331 TIGR02880 cbbX_cfxQ probable R 93.9 0.32 6.9E-06 49.4 9.4 19 182-200 58-76 (284)
332 TIGR00678 holB DNA polymerase 93.9 0.24 5.3E-06 46.8 8.1 30 295-328 94-123 (188)
333 PRK13833 conjugal transfer pro 93.9 0.1 2.2E-06 53.8 5.7 58 168-236 129-187 (323)
334 PHA03368 DNA packaging termina 93.8 0.26 5.5E-06 54.8 8.9 135 180-342 252-390 (738)
335 TIGR03015 pepcterm_ATPase puta 93.8 0.56 1.2E-05 47.0 11.0 32 167-198 23-59 (269)
336 PRK11823 DNA repair protein Ra 93.7 0.29 6.2E-06 53.1 9.2 53 181-247 79-131 (446)
337 KOG0741 AAA+-type ATPase [Post 93.7 0.45 9.8E-06 51.1 10.2 52 295-346 596-653 (744)
338 TIGR01425 SRP54_euk signal rec 93.7 0.94 2E-05 48.5 12.8 54 297-354 182-236 (429)
339 TIGR00064 ftsY signal recognit 93.7 0.74 1.6E-05 46.4 11.6 59 296-354 153-214 (272)
340 PRK08939 primosomal protein Dn 93.7 0.36 7.8E-06 49.6 9.4 26 182-208 156-181 (306)
341 TIGR03877 thermo_KaiC_1 KaiC d 93.7 0.29 6.3E-06 48.3 8.5 53 181-247 20-72 (237)
342 COG2256 MGS1 ATPase related to 93.6 0.34 7.4E-06 50.4 8.9 17 183-199 49-65 (436)
343 PHA03333 putative ATPase subun 93.6 1.1 2.4E-05 50.2 13.2 69 168-248 170-241 (752)
344 KOG0745 Putative ATP-dependent 93.6 0.078 1.7E-06 55.3 4.2 17 182-198 226-242 (564)
345 TIGR00580 mfd transcription-re 93.5 0.33 7.2E-06 57.2 9.9 74 404-477 500-578 (926)
346 COG4371 Predicted membrane pro 93.5 0.18 4E-06 48.2 6.2 12 576-587 78-89 (334)
347 PRK08533 flagellar accessory p 93.5 0.54 1.2E-05 46.2 10.0 53 180-246 22-74 (230)
348 PRK14948 DNA polymerase III su 93.5 0.86 1.9E-05 51.5 12.7 29 295-327 119-147 (620)
349 PLN03025 replication factor C 93.4 0.46 9.9E-06 49.2 9.9 17 183-199 35-51 (319)
350 PRK05973 replicative DNA helic 93.4 0.26 5.7E-06 48.4 7.5 81 151-246 24-114 (237)
351 KOG0742 AAA+-type ATPase [Post 93.3 0.28 6E-06 51.0 7.6 16 183-198 385-400 (630)
352 PRK05986 cob(I)alamin adenolsy 93.3 0.73 1.6E-05 43.5 10.0 54 295-352 113-168 (191)
353 PTZ00454 26S protease regulato 93.3 0.5 1.1E-05 50.4 9.9 53 143-198 140-195 (398)
354 PHA00729 NTP-binding motif con 93.2 0.7 1.5E-05 44.9 10.0 75 274-352 59-138 (226)
355 TIGR03881 KaiC_arch_4 KaiC dom 93.2 0.7 1.5E-05 45.2 10.3 20 181-200 19-38 (229)
356 cd03115 SRP The signal recogni 93.1 1.6 3.4E-05 40.6 12.1 55 296-354 81-136 (173)
357 PRK06647 DNA polymerase III su 93.1 0.7 1.5E-05 51.6 11.1 41 295-341 117-157 (563)
358 PRK13894 conjugal transfer ATP 93.1 0.15 3.2E-06 52.7 5.5 57 168-235 133-190 (319)
359 PF05876 Terminase_GpA: Phage 93.1 0.045 9.7E-07 61.0 1.8 62 167-240 16-79 (557)
360 KOG0733 Nuclear AAA ATPase (VC 93.0 0.19 4E-06 54.8 6.1 53 142-197 505-560 (802)
361 PRK07993 DNA polymerase III su 93.0 0.23 4.9E-06 51.7 6.8 42 295-341 106-147 (334)
362 cd00984 DnaB_C DnaB helicase C 93.0 0.43 9.2E-06 47.1 8.5 29 180-209 11-39 (242)
363 PF01443 Viral_helicase1: Vira 93.0 0.093 2E-06 51.5 3.7 13 185-197 1-13 (234)
364 PRK14965 DNA polymerase III su 93.0 0.72 1.6E-05 51.8 11.1 43 295-343 117-159 (576)
365 PF06733 DEAD_2: DEAD_2; Inte 92.9 0.093 2E-06 49.1 3.5 45 267-311 113-159 (174)
366 COG1198 PriA Primosomal protei 92.9 0.33 7.1E-06 55.2 8.2 96 376-477 222-318 (730)
367 COG1219 ClpX ATP-dependent pro 92.9 0.13 2.9E-06 51.6 4.6 19 180-198 95-113 (408)
368 PRK03992 proteasome-activating 92.9 0.43 9.4E-06 50.8 8.8 17 182-198 165-181 (389)
369 PRK06090 DNA polymerase III su 92.9 0.57 1.2E-05 48.3 9.3 41 167-208 3-50 (319)
370 PRK13342 recombination factor 92.8 0.63 1.4E-05 50.1 10.2 15 184-198 38-52 (413)
371 COG4626 Phage terminase-like p 92.8 0.69 1.5E-05 50.3 10.1 147 167-340 61-223 (546)
372 TIGR02782 TrbB_P P-type conjug 92.7 0.22 4.9E-06 50.9 6.1 58 168-236 117-175 (299)
373 PRK14963 DNA polymerase III su 92.7 0.53 1.2E-05 51.8 9.3 29 295-327 114-142 (504)
374 TIGR00708 cobA cob(I)alamin ad 92.7 0.89 1.9E-05 42.3 9.4 53 295-351 95-149 (173)
375 PRK12724 flagellar biosynthesi 92.6 1 2.2E-05 47.9 11.0 57 296-353 298-356 (432)
376 COG3267 ExeA Type II secretory 92.6 0.69 1.5E-05 45.3 8.8 23 178-200 46-69 (269)
377 KOG2543 Origin recognition com 92.6 1.8 4E-05 44.9 12.2 137 168-345 10-161 (438)
378 COG1110 Reverse gyrase [DNA re 92.5 0.38 8.3E-06 55.4 7.9 61 404-464 125-191 (1187)
379 PF03969 AFG1_ATPase: AFG1-lik 92.4 1.3 2.9E-05 46.5 11.5 48 295-346 125-172 (362)
380 PRK08451 DNA polymerase III su 92.4 1.3 2.9E-05 48.8 11.9 40 295-339 115-154 (535)
381 COG0470 HolB ATPase involved i 92.4 0.62 1.3E-05 48.1 9.1 26 182-208 23-49 (325)
382 PRK13341 recombination factor 92.4 0.72 1.6E-05 53.0 10.2 16 183-198 53-68 (725)
383 PRK05896 DNA polymerase III su 92.3 0.56 1.2E-05 52.2 9.0 18 184-201 40-57 (605)
384 PRK04537 ATP-dependent RNA hel 92.3 0.74 1.6E-05 51.7 10.1 70 225-304 259-332 (572)
385 KOG0740 AAA+-type ATPase [Post 92.3 0.96 2.1E-05 48.0 10.2 61 296-356 244-313 (428)
386 PRK06067 flagellar accessory p 92.3 1 2.3E-05 44.2 10.1 19 182-200 25-43 (234)
387 TIGR01241 FtsH_fam ATP-depende 92.2 0.6 1.3E-05 51.6 9.2 16 182-197 88-103 (495)
388 PF01695 IstB_IS21: IstB-like 92.2 0.26 5.5E-06 46.4 5.4 47 179-239 44-90 (178)
389 PRK09112 DNA polymerase III su 92.2 0.3 6.6E-06 51.1 6.5 40 295-339 139-178 (351)
390 KOG0739 AAA+-type ATPase [Post 92.2 2.1 4.5E-05 42.9 11.6 130 177-362 156-298 (439)
391 PRK07471 DNA polymerase III su 92.1 0.72 1.6E-05 48.6 9.2 42 295-341 139-180 (365)
392 PRK10416 signal recognition pa 91.9 2.4 5.2E-05 43.8 12.6 59 296-354 195-256 (318)
393 PRK08699 DNA polymerase III su 91.8 0.61 1.3E-05 48.4 8.1 34 168-201 2-40 (325)
394 TIGR02525 plasmid_TraJ plasmid 91.8 0.35 7.7E-06 50.9 6.4 27 182-209 149-175 (372)
395 PRK14971 DNA polymerase III su 91.8 1.5 3.1E-05 49.7 11.6 42 295-342 119-160 (614)
396 PRK10689 transcription-repair 91.7 0.83 1.8E-05 55.3 10.2 74 404-477 649-727 (1147)
397 PRK00440 rfc replication facto 91.7 1.6 3.4E-05 44.9 11.2 15 184-198 40-54 (319)
398 PRK08058 DNA polymerase III su 91.6 0.83 1.8E-05 47.5 8.8 41 295-341 108-148 (329)
399 PF07728 AAA_5: AAA domain (dy 91.5 0.062 1.3E-06 48.1 0.4 15 184-198 1-15 (139)
400 PRK04195 replication factor C 91.5 0.79 1.7E-05 50.4 9.1 17 182-198 39-55 (482)
401 COG2909 MalT ATP-dependent tra 91.5 0.31 6.7E-06 55.3 5.8 42 298-343 130-171 (894)
402 PRK12608 transcription termina 91.4 1.4 3E-05 46.2 10.2 29 170-198 118-149 (380)
403 PRK07940 DNA polymerase III su 91.4 1.3 2.8E-05 47.2 10.2 45 295-345 115-159 (394)
404 TIGR03499 FlhF flagellar biosy 91.3 0.34 7.3E-06 49.2 5.5 17 183-199 195-211 (282)
405 PF02572 CobA_CobO_BtuR: ATP:c 91.3 2.8 6.1E-05 39.0 11.1 53 295-351 94-148 (172)
406 TIGR02688 conserved hypothetic 91.2 1.1 2.3E-05 47.7 9.1 51 150-200 170-227 (449)
407 TIGR00767 rho transcription te 91.2 0.76 1.6E-05 48.5 8.0 28 171-198 154-184 (415)
408 PF02606 LpxK: Tetraacyldisacc 91.2 8.2 0.00018 40.0 15.6 225 192-461 47-286 (326)
409 PTZ00361 26 proteosome regulat 91.1 0.93 2E-05 48.9 8.8 17 182-198 217-233 (438)
410 cd03239 ABC_SMC_head The struc 91.0 0.25 5.3E-06 46.5 3.9 43 296-341 115-157 (178)
411 TIGR02237 recomb_radB DNA repa 91.0 0.5 1.1E-05 45.5 6.2 20 182-201 12-31 (209)
412 PRK09087 hypothetical protein; 90.9 0.59 1.3E-05 45.8 6.6 42 299-345 89-130 (226)
413 TIGR01242 26Sp45 26S proteasom 90.9 1.4 3.1E-05 46.5 10.0 17 182-198 156-172 (364)
414 KOG0991 Replication factor C, 90.8 0.61 1.3E-05 45.0 6.2 29 296-325 112-140 (333)
415 PRK14953 DNA polymerase III su 90.8 1.4 3E-05 48.4 9.9 30 295-328 117-146 (486)
416 TIGR02397 dnaX_nterm DNA polym 90.7 0.98 2.1E-05 47.4 8.6 29 295-327 115-143 (355)
417 PRK06305 DNA polymerase III su 90.7 1.4 3E-05 48.0 9.8 38 295-337 119-156 (451)
418 cd01126 TraG_VirD4 The TraG/Tr 90.7 0.17 3.7E-06 53.9 2.8 47 184-245 1-47 (384)
419 TIGR00959 ffh signal recogniti 90.6 3.4 7.4E-05 44.5 12.5 17 184-200 101-117 (428)
420 KOG3973 Uncharacterized conser 90.5 0.5 1.1E-05 47.5 5.6 12 528-539 317-328 (465)
421 PF05707 Zot: Zonular occluden 90.5 0.45 9.8E-06 45.3 5.2 55 297-352 79-135 (193)
422 PF02534 T4SS-DNA_transf: Type 90.4 0.29 6.3E-06 53.6 4.4 49 183-246 45-93 (469)
423 TIGR02524 dot_icm_DotB Dot/Icm 90.4 0.37 7.9E-06 50.6 4.9 18 181-198 133-150 (358)
424 PRK10867 signal recognition pa 90.4 4.2 9.1E-05 43.8 12.9 17 184-200 102-118 (433)
425 PRK11034 clpA ATP-dependent Cl 90.3 2.7 5.9E-05 48.6 12.2 17 182-198 207-223 (758)
426 KOG0733 Nuclear AAA ATPase (VC 90.3 1.6 3.5E-05 47.8 9.6 58 137-197 179-238 (802)
427 PHA00012 I assembly protein 90.3 4.5 9.7E-05 41.4 12.1 58 296-357 80-142 (361)
428 KOG0298 DEAD box-containing he 90.2 0.46 1E-05 55.9 5.8 97 403-503 1220-1316(1394)
429 PRK10590 ATP-dependent RNA hel 90.2 1.5 3.3E-05 47.8 9.7 68 225-302 247-318 (456)
430 PRK13900 type IV secretion sys 90.2 0.55 1.2E-05 48.8 5.9 20 178-197 156-175 (332)
431 COG0552 FtsY Signal recognitio 90.2 4.2 9E-05 41.7 11.9 134 185-354 142-281 (340)
432 PRK09376 rho transcription ter 90.1 1.2 2.6E-05 46.9 8.2 29 169-197 153-184 (416)
433 TIGR03878 thermo_KaiC_2 KaiC d 90.0 1.3 2.7E-05 44.5 8.3 21 181-201 35-55 (259)
434 TIGR03689 pup_AAA proteasome A 89.9 0.96 2.1E-05 49.6 7.8 53 143-198 177-232 (512)
435 PRK04837 ATP-dependent RNA hel 89.9 1.4 3.1E-05 47.5 9.2 70 225-304 257-330 (423)
436 TIGR03600 phage_DnaB phage rep 89.8 1.1 2.4E-05 48.3 8.2 28 179-207 191-218 (421)
437 PF05729 NACHT: NACHT domain 89.7 1.4 3E-05 40.2 7.7 15 184-198 2-16 (166)
438 PRK04841 transcriptional regul 89.7 2.8 6.1E-05 50.0 12.3 42 298-343 122-163 (903)
439 PF01637 Arch_ATPase: Archaeal 89.7 0.37 8E-06 46.8 4.1 16 182-197 20-35 (234)
440 TIGR01243 CDC48 AAA family ATP 89.7 1.4 3E-05 51.2 9.4 16 182-197 487-502 (733)
441 COG1200 RecG RecG-like helicas 89.6 1.7 3.8E-05 48.3 9.4 74 404-477 311-389 (677)
442 PRK04328 hypothetical protein; 89.6 2.1 4.6E-05 42.5 9.5 53 181-247 22-74 (249)
443 PRK13897 type IV secretion sys 89.6 0.33 7.1E-06 54.4 4.0 56 183-257 159-214 (606)
444 COG0513 SrmB Superfamily II DN 89.6 1.7 3.7E-05 48.2 9.5 68 225-302 275-346 (513)
445 TIGR03880 KaiC_arch_3 KaiC dom 89.5 1.7 3.6E-05 42.4 8.6 51 182-246 16-66 (224)
446 cd01128 rho_factor Transcripti 89.5 1.6 3.4E-05 43.4 8.3 18 180-197 14-31 (249)
447 PRK13851 type IV secretion sys 89.5 0.53 1.1E-05 49.1 5.1 45 178-236 158-202 (344)
448 KOG2028 ATPase related to the 89.3 1.4 3.1E-05 45.3 7.7 15 184-198 164-178 (554)
449 KOG0333 U5 snRNP-like RNA heli 89.2 1.1 2.5E-05 47.9 7.3 69 224-302 518-590 (673)
450 KOG0344 ATP-dependent RNA heli 89.2 1.7 3.7E-05 47.2 8.7 102 186-307 361-466 (593)
451 KOG0729 26S proteasome regulat 89.1 5.8 0.00013 39.1 11.5 57 142-199 171-228 (435)
452 PRK07399 DNA polymerase III su 89.0 2.2 4.8E-05 43.9 9.4 52 282-340 110-161 (314)
453 TIGR03346 chaperone_ClpB ATP-d 89.0 1.8 3.8E-05 51.2 9.7 18 182-199 194-211 (852)
454 TIGR01420 pilT_fam pilus retra 88.8 0.77 1.7E-05 48.1 5.9 17 182-198 122-138 (343)
455 TIGR02639 ClpA ATP-dependent C 88.7 5 0.00011 46.6 13.0 17 182-198 203-219 (731)
456 PRK07133 DNA polymerase III su 88.7 1.6 3.5E-05 49.8 8.6 43 295-343 116-158 (725)
457 TIGR00416 sms DNA repair prote 88.7 1.6 3.4E-05 47.5 8.3 52 181-246 93-144 (454)
458 CHL00176 ftsH cell division pr 88.5 2.1 4.6E-05 48.5 9.4 16 182-197 216-231 (638)
459 PRK11776 ATP-dependent RNA hel 88.5 1.9 4.1E-05 47.1 8.9 71 226-306 245-319 (460)
460 PRK11192 ATP-dependent RNA hel 88.4 1.8 4E-05 46.8 8.7 69 225-303 247-319 (434)
461 KOG0331 ATP-dependent RNA heli 88.4 1.7 3.7E-05 47.3 8.1 68 225-302 343-414 (519)
462 COG2255 RuvB Holliday junction 88.3 0.73 1.6E-05 45.9 4.8 16 183-198 53-68 (332)
463 COG2804 PulE Type II secretory 88.3 0.63 1.4E-05 50.1 4.8 40 169-209 243-284 (500)
464 PRK10865 protein disaggregatio 88.3 1.9 4.1E-05 50.9 9.2 16 183-198 200-215 (857)
465 PF10593 Z1: Z1 domain; Inter 88.2 1.3 2.9E-05 43.6 6.7 103 428-539 110-217 (239)
466 PRK13764 ATPase; Provisional 88.2 0.79 1.7E-05 51.2 5.7 26 181-207 256-281 (602)
467 PRK10263 DNA translocase FtsK; 88.1 3.3 7.2E-05 49.8 10.9 19 183-201 1011-1029(1355)
468 PF03796 DnaB_C: DnaB-like hel 88.1 1.2 2.6E-05 44.5 6.6 126 181-325 18-162 (259)
469 TIGR00665 DnaB replicative DNA 88.0 1.4 3.1E-05 47.7 7.5 27 181-208 194-220 (434)
470 TIGR01243 CDC48 AAA family ATP 87.9 1.9 4.1E-05 50.1 8.9 17 181-197 211-227 (733)
471 COG1197 Mfd Transcription-repa 87.9 2.6 5.6E-05 49.9 9.7 74 404-477 643-721 (1139)
472 PHA03372 DNA packaging termina 87.9 4.1 8.9E-05 45.1 10.6 128 183-341 203-336 (668)
473 TIGR00602 rad24 checkpoint pro 87.9 3.2 7E-05 46.9 10.3 44 145-199 81-127 (637)
474 PRK08506 replicative DNA helic 87.7 2 4.3E-05 47.0 8.4 112 181-310 191-315 (472)
475 KOG0347 RNA helicase [RNA proc 87.7 0.97 2.1E-05 48.7 5.6 68 406-477 265-345 (731)
476 KOG1133 Helicase of the DEAD s 87.6 0.72 1.6E-05 51.0 4.8 44 167-210 15-62 (821)
477 PF03237 Terminase_6: Terminas 87.6 5.8 0.00013 41.4 11.8 145 186-357 1-154 (384)
478 COG2109 BtuR ATP:corrinoid ade 87.5 3.2 7E-05 38.8 8.3 53 297-353 122-176 (198)
479 PF12683 DUF3798: Protein of u 87.5 1.4 3E-05 43.5 6.2 136 402-543 60-204 (275)
480 PTZ00110 helicase; Provisional 87.5 6.5 0.00014 43.9 12.5 71 223-303 377-451 (545)
481 PRK06904 replicative DNA helic 87.4 3.8 8.2E-05 44.8 10.3 116 181-311 220-348 (472)
482 TIGR02868 CydC thiol reductant 87.3 0.83 1.8E-05 50.9 5.3 31 295-325 486-516 (529)
483 cd01394 radB RadB. The archaea 87.3 1.5 3.2E-05 42.5 6.5 19 182-200 19-37 (218)
484 COG0630 VirB11 Type IV secreto 87.2 0.71 1.5E-05 47.5 4.3 39 165-204 125-164 (312)
485 KOG0730 AAA+-type ATPase [Post 87.1 4.2 9.1E-05 45.2 10.2 56 140-198 426-484 (693)
486 COG4604 CeuD ABC-type enteroch 87.1 0.88 1.9E-05 42.9 4.4 138 181-325 26-181 (252)
487 KOG2036 Predicted P-loop ATPas 87.1 5 0.00011 44.7 10.6 134 169-343 255-412 (1011)
488 PRK13850 type IV secretion sys 87.0 0.64 1.4E-05 52.8 4.2 49 182-245 139-187 (670)
489 TIGR00635 ruvB Holliday juncti 87.0 0.54 1.2E-05 48.2 3.4 16 183-198 31-46 (305)
490 TIGR02655 circ_KaiC circadian 86.9 2.5 5.5E-05 46.5 8.7 52 181-246 262-313 (484)
491 TIGR00631 uvrb excinuclease AB 86.9 9.4 0.0002 43.6 13.4 116 224-351 443-562 (655)
492 COG3973 Superfamily I DNA and 86.9 2.7 5.9E-05 46.1 8.5 125 335-482 591-717 (747)
493 PF13481 AAA_25: AAA domain; P 86.9 6 0.00013 37.2 10.4 63 181-247 31-93 (193)
494 PRK00080 ruvB Holliday junctio 86.9 1.1 2.3E-05 46.7 5.5 16 183-198 52-67 (328)
495 COG1132 MdlB ABC-type multidru 86.8 1 2.2E-05 50.6 5.8 31 295-325 481-511 (567)
496 KOG0732 AAA+-type ATPase conta 86.7 1.4 3.1E-05 51.6 6.7 51 145-198 262-315 (1080)
497 PRK05416 glmZ(sRNA)-inactivati 86.7 7.2 0.00016 39.7 11.2 26 413-439 259-284 (288)
498 COG1222 RPT1 ATP-dependent 26S 86.7 6.4 0.00014 40.7 10.5 53 142-197 145-200 (406)
499 PRK14701 reverse gyrase; Provi 86.7 1.6 3.5E-05 54.6 7.6 60 403-462 121-186 (1638)
500 PF00265 TK: Thymidine kinase; 86.6 0.54 1.2E-05 44.1 2.8 106 186-340 5-110 (176)
No 1
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-88 Score=692.45 Aligned_cols=429 Identities=62% Similarity=0.971 Sum_probs=407.0
Q ss_pred CCcccccccCCCcccCCCCcccccCCCCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCC
Q 007280 113 QPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTG 192 (609)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TG 192 (609)
..+....++++||++|++++|++++.++|+++.+|++..+.+.|..++...+|..|||||+.+||.+..++|+++||+||
T Consensus 42 ~~~~~~~~~~~nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTG 121 (482)
T KOG0335|consen 42 QAFFLGISTGINFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTG 121 (482)
T ss_pred hhhhhccchhhccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCC
Confidence 33444468899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhc
Q 007280 193 SGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER 272 (609)
Q Consensus 193 sGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~ 272 (609)
||||.|||+|++.++++..+..+.......+|.+|||+||||||.|+++++++|.+.+.++++++||+.+...+.+.+.+
T Consensus 122 sGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~ 201 (482)
T KOG0335|consen 122 SGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKR 201 (482)
T ss_pred CcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhcc
Confidence 99999999999999999988776666566789999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhh-cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHH
Q 007280 273 GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351 (609)
Q Consensus 273 ~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~-~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~ 351 (609)
+|||+|||||+|.++++...+.|+.++||||||||+|+| |+|+++|++|+.+..|++...+|++|||||+|++++.++.
T Consensus 202 gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~ 281 (482)
T KOG0335|consen 202 GCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAA 281 (482)
T ss_pred CccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHH
Confidence 999999999999999999999999999999999999999 9999999999999999989999999999999999999999
Q ss_pred HhhcC-cEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhc--CcCCCCceEEEEecchhhHHHHHHHHHhCC
Q 007280 352 DFLAN-YIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVAN--GVHGKQALTLVFVETKKGADALEHWLYMNG 428 (609)
Q Consensus 352 ~~l~~-~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~--~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~ 428 (609)
.|+.+ |+++.+.+++...+++.|.+.+|.+..|..+|+++|...... .......+++|||++++.|+.|+.+|...+
T Consensus 282 ~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~ 361 (482)
T KOG0335|consen 282 DFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG 361 (482)
T ss_pred HHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC
Confidence 99987 999999999999999999999999999999999999866532 111224489999999999999999999999
Q ss_pred CCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEE
Q 007280 429 FPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFF 508 (609)
Q Consensus 429 ~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~ 508 (609)
+++..|||+.+|.+|+++++.|+.|+++|||||+|++||||||+|+||||||+|.++++|+||||||||+|+.|.++.||
T Consensus 362 ~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 362 YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHhcccchHHHHHHHhhc
Q 007280 509 NENNMSLARPLTELMQEANQEVPAWLNRYASRA 541 (609)
Q Consensus 509 ~~~~~~~~~~l~~~l~~~~q~vp~~l~~~a~~~ 541 (609)
+..+..+++.|.++|.+++|++|+||.+++...
T Consensus 442 n~~~~~i~~~L~~~l~ea~q~vP~wl~~~~~~~ 474 (482)
T KOG0335|consen 442 NEKNQNIAKALVEILTEANQEVPQWLSELSRER 474 (482)
T ss_pred ccccchhHHHHHHHHHHhcccCcHHHHhhhhhc
Confidence 999999999999999999999999999976554
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-84 Score=673.66 Aligned_cols=389 Identities=49% Similarity=0.791 Sum_probs=366.6
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccc
Q 007280 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (609)
Q Consensus 145 ~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~ 224 (609)
..|.+++|++.+...++..+|+.|||||.++||.+++|+|++..|.||||||++|++|++.++.... ....+..+|
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~----~~~~~~~~P 166 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ----GKLSRGDGP 166 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcc----ccccCCCCC
Confidence 3899999999999999999999999999999999999999999999999999999999999998742 122345678
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEec
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlD 304 (609)
.+|||+||||||.||..++.+|+....++++|+|||.++..|++.++++++|+|+||+||+|+++...+.|+++.|||||
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLD 246 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLD 246 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccC--CcccceeEEEEEEecc
Q 007280 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVG--SSTDLIVQRVEFVHES 382 (609)
Q Consensus 305 Eah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~--~~~~~i~q~~~~~~~~ 382 (609)
|||+|+||||+++|+.|+..+. ++.+|++|+|||||.++..++..||.+|+.+.+.... ....++.|.++.++..
T Consensus 247 EADrMldmGFe~qI~~Il~~i~---~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~ 323 (519)
T KOG0331|consen 247 EADRMLDMGFEPQIRKILSQIP---RPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDET 323 (519)
T ss_pred cHHhhhccccHHHHHHHHHhcC---CCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHH
Confidence 9999999999999999999994 3445999999999999999999999999999988554 6678899999999999
Q ss_pred chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc
Q 007280 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 462 (609)
Q Consensus 383 ~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~ 462 (609)
.|...|.++|.... .++..|+||||+|++.|+.|+..|...++++..|||+++|.+|+.+|+.|++|+++||||||
T Consensus 324 ~K~~~l~~lL~~~~----~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd 399 (519)
T KOG0331|consen 324 AKLRKLGKLLEDIS----SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD 399 (519)
T ss_pred HHHHHHHHHHHHHh----ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcc
Confidence 99999999998886 33578999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcccchHHHHHHHhhcc
Q 007280 463 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVPAWLNRYASRAN 542 (609)
Q Consensus 463 v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~a~~~~ 542 (609)
||+||||||+|++|||||+|.++++||||+|||||+|++|.+++||+..+...+..|.+.+++++|.||+.|..++....
T Consensus 400 VAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~ 479 (519)
T KOG0331|consen 400 VAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSG 479 (519)
T ss_pred cccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CC
Q 007280 543 YG 544 (609)
Q Consensus 543 ~g 544 (609)
++
T Consensus 480 ~~ 481 (519)
T KOG0331|consen 480 SG 481 (519)
T ss_pred cC
Confidence 44
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.2e-74 Score=635.43 Aligned_cols=401 Identities=46% Similarity=0.745 Sum_probs=366.3
Q ss_pred CCCCcccccCCCCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHH
Q 007280 128 YEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGI 207 (609)
Q Consensus 128 ~~~~~v~~~~~~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l 207 (609)
..++.+ +.+..+|.|+.+|++++|++.+++.|..++|++|||+|.++||.+++++|+|++||||||||++|++|++.++
T Consensus 114 ~~~i~~-~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i 192 (545)
T PTZ00110 114 EKEITI-IAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHI 192 (545)
T ss_pred hcCcEE-ecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHH
Confidence 333443 3678899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHH
Q 007280 208 MREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDL 287 (609)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~ 287 (609)
....... ...+|.+|||+||||||.|+++++++|.....+++.+++||.+...+...+.++++|||+||++|+++
T Consensus 193 ~~~~~~~-----~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~ 267 (545)
T PTZ00110 193 NAQPLLR-----YGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDF 267 (545)
T ss_pred Hhccccc-----CCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 7643221 13357899999999999999999999999889999999999999999999999999999999999999
Q ss_pred HHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhc-CcEEEEecccC
Q 007280 288 LERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA-NYIFLAVGRVG 366 (609)
Q Consensus 288 l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~-~~~~~~~~~~~ 366 (609)
+......++++++|||||||+|++++|+++++.|+..+ ++.+|+++||||+|++++.+++.++. +++.+.+....
T Consensus 268 l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~----~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~ 343 (545)
T PTZ00110 268 LESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI----RPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD 343 (545)
T ss_pred HHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhC----CCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 99888889999999999999999999999999999988 56789999999999999999999886 57777776554
Q ss_pred -CcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHH
Q 007280 367 -SSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 445 (609)
Q Consensus 367 -~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~ 445 (609)
.....+.+.+..+....|...|.++|..... ...++||||++++.|+.|++.|...++++..+||++++.+|+.
T Consensus 344 l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~-----~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~ 418 (545)
T PTZ00110 344 LTACHNIKQEVFVVEEHEKRGKLKMLLQRIMR-----DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTW 418 (545)
T ss_pred cccCCCeeEEEEEEechhHHHHHHHHHHHhcc-----cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHH
Confidence 3456788888888888888888888876542 2678999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHH
Q 007280 446 ALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQE 525 (609)
Q Consensus 446 ~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~ 525 (609)
+++.|++|+.+|||||+++++|||||+|++|||||+|.++++|+||+|||||+|++|.|++|+++++..++..|.++|++
T Consensus 419 il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~ 498 (545)
T PTZ00110 419 VLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLRE 498 (545)
T ss_pred HHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHhhccC
Q 007280 526 ANQEVPAWLNRYASRANY 543 (609)
Q Consensus 526 ~~q~vp~~l~~~a~~~~~ 543 (609)
+.|+||+||.+++....+
T Consensus 499 ~~q~vp~~l~~~~~~~~~ 516 (545)
T PTZ00110 499 AKQPVPPELEKLSNERSN 516 (545)
T ss_pred ccCCCCHHHHHHHHHhcC
Confidence 999999999999987644
No 4
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-76 Score=591.42 Aligned_cols=394 Identities=44% Similarity=0.700 Sum_probs=375.1
Q ss_pred cccccCCCCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhh
Q 007280 132 PVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQ 211 (609)
Q Consensus 132 ~v~~~~~~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~ 211 (609)
.+.+++...|.|+.+|+.+++++.|+..+...-|.+|||+|.+++|..+.++|++-+|.||||||.||+.|++-+++.+.
T Consensus 210 nlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~ 289 (731)
T KOG0339|consen 210 NLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP 289 (731)
T ss_pred cceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchh
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc
Q 007280 212 YVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 291 (609)
Q Consensus 212 ~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~ 291 (609)
..++ ..+|+.||||||||||.||+.++++|++..+++++++|||.+..+|...|+.+|.||||||+||++++...
T Consensus 290 eL~~-----g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK 364 (731)
T KOG0339|consen 290 ELKP-----GEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK 364 (731)
T ss_pred hhcC-----CCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh
Confidence 6543 45799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccc
Q 007280 292 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDL 371 (609)
Q Consensus 292 ~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 371 (609)
..++.+++||||||||+|+++||+++++.|..++ .+++|+|+|||||+..++.+++++|.+++.+..+.++..+..
T Consensus 365 atn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hi----rpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~d 440 (731)
T KOG0339|consen 365 ATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHI----RPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANED 440 (731)
T ss_pred cccceeeeEEEEechhhhhccccHHHHHHHHhhc----CCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccc
Confidence 9999999999999999999999999999999999 788999999999999999999999999999999999999999
Q ss_pred eeEEEEEEecc-chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhh
Q 007280 372 IVQRVEFVHES-DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSF 450 (609)
Q Consensus 372 i~q~~~~~~~~-~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F 450 (609)
|.|.+.++... .|+..|+..|..... .+++|||+.-+..++.++..|...++.+..+||+|.|.+|.+++.+|
T Consensus 441 ITQ~V~V~~s~~~Kl~wl~~~L~~f~S------~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~f 514 (731)
T KOG0339|consen 441 ITQTVSVCPSEEKKLNWLLRHLVEFSS------EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKF 514 (731)
T ss_pred hhheeeeccCcHHHHHHHHHHhhhhcc------CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHH
Confidence 99999988764 567777777776542 56799999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcccc
Q 007280 451 KSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEV 530 (609)
Q Consensus 451 ~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~v 530 (609)
+....+|||+||+++||+||+++..|||||+-.+++.|+|||||+||+|.+|.+++++++.|..++-.|++.|+.+.|.|
T Consensus 515 Kkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnV 594 (731)
T KOG0339|consen 515 KKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNV 594 (731)
T ss_pred hhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhh
Q 007280 531 PAWLNRYASR 540 (609)
Q Consensus 531 p~~l~~~a~~ 540 (609)
|+.|.+||-.
T Consensus 595 P~~l~dlamk 604 (731)
T KOG0339|consen 595 PDELMDLAMK 604 (731)
T ss_pred ChHHHHHHhh
Confidence 9999999844
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5.4e-76 Score=594.68 Aligned_cols=403 Identities=41% Similarity=0.681 Sum_probs=373.7
Q ss_pred CCCcccccCCCCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 129 EDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 129 ~~~~v~~~~~~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
+++.+..++..+|.|+.+|++.+|+..+++.|...+|..|||||.++||..++.+|+|..|+||||||++|++|++..|.
T Consensus 229 edynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~Is 308 (673)
T KOG0333|consen 229 EDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWIS 308 (673)
T ss_pred cceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHH
Q 007280 209 REQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL 288 (609)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l 288 (609)
..++..+. .....+|.++||+|||+|++||.++..+|+..++++++.++||.+..++--.+..+|+|+|+||++|++.|
T Consensus 309 slP~~~~~-en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~L 387 (673)
T KOG0333|consen 309 SLPPMARL-ENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSL 387 (673)
T ss_pred cCCCcchh-hhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHH
Confidence 66533221 12356788999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCC---------------------CceEEEEEeeccHHHH
Q 007280 289 ERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPG---------------------MRQTMLFSATFPKEIQ 347 (609)
Q Consensus 289 ~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~---------------------~~q~il~SAT~~~~~~ 347 (609)
++..+.++.+.|||+||||+|+||+|++++..|+.++...... -+|++|||||+|+.+.
T Consensus 388 enr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ve 467 (673)
T KOG0333|consen 388 ENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVE 467 (673)
T ss_pred HHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHH
Confidence 9999999999999999999999999999999999988432111 2799999999999999
Q ss_pred HHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC
Q 007280 348 RLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (609)
Q Consensus 348 ~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~ 427 (609)
.+++.||.+++.+.++..+...+.+.|.+.++....|...|+++|...+ ..++|||+|+++.|+.|++.|...
T Consensus 468 rlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~-------~ppiIIFvN~kk~~d~lAk~LeK~ 540 (673)
T KOG0333|consen 468 RLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNF-------DPPIIIFVNTKKGADALAKILEKA 540 (673)
T ss_pred HHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCC-------CCCEEEEEechhhHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999998764 678999999999999999999999
Q ss_pred CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEE
Q 007280 428 GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF 507 (609)
Q Consensus 428 ~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f 507 (609)
++.++.|||+.+|++|+.+|..|+++...|||||||++||||||+|.+|||||++.++++|+||||||||+|+.|+|++|
T Consensus 541 g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSf 620 (673)
T KOG0333|consen 541 GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISF 620 (673)
T ss_pred cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCChhhHHHHHHHHH-HhcccchHHHHHHHh
Q 007280 508 FNENNMSLARPLTELMQ-EANQEVPAWLNRYAS 539 (609)
Q Consensus 508 ~~~~~~~~~~~l~~~l~-~~~q~vp~~l~~~a~ 539 (609)
+++.|.....+|.+.+. ......|..|...-+
T Consensus 621 lt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~ 653 (673)
T KOG0333|consen 621 LTPADTAVFYDLKQALRESVKSHCPPELANHPD 653 (673)
T ss_pred eccchhHHHHHHHHHHHHhhhccCChhhccChh
Confidence 99999998888888777 466778888866543
No 6
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-76 Score=577.37 Aligned_cols=366 Identities=40% Similarity=0.617 Sum_probs=349.9
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccc
Q 007280 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (609)
Q Consensus 143 ~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~ 222 (609)
...+|.++++.+.|.++++..++.+||+||+++||.++.++|+|+.|+||||||.+|+|||+++|+++...
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~--------- 129 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKL--------- 129 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCC---------
Confidence 44679999999999999999999999999999999999999999999999999999999999999985432
Q ss_pred cceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHc-ccccccceEEE
Q 007280 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQMIRYL 301 (609)
Q Consensus 223 ~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~-~~~~l~~i~~l 301 (609)
|++|||+||||||.||.+.+..+....+++++++.||.....|...+.+.+||||||||+|.+++++ +.+++..++||
T Consensus 130 -~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 130 -FFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred -ceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 6799999999999999999999999999999999999999999999999999999999999999995 56789999999
Q ss_pred EeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEec
Q 007280 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE 381 (609)
Q Consensus 302 VlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~ 381 (609)
|+||||+++|+.|.+.+.+|+..+ |..+|++|||||+++.+.++....+.++..+.+.......+.+.|.|.+++.
T Consensus 209 VlDEADrlLd~dF~~~ld~ILk~i----p~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~ 284 (476)
T KOG0330|consen 209 VLDEADRLLDMDFEEELDYILKVI----PRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG 284 (476)
T ss_pred hhchHHhhhhhhhHHHHHHHHHhc----CccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc
Confidence 999999999999999999999999 7899999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEc
Q 007280 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVAT 461 (609)
Q Consensus 382 ~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT 461 (609)
..|..+|+.+|.+.. ...+||||++...+++++-+|...++.+..+||+|+|..|.-+++.|+++.+.|||||
T Consensus 285 k~K~~yLV~ll~e~~-------g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~T 357 (476)
T KOG0330|consen 285 KDKDTYLVYLLNELA-------GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCT 357 (476)
T ss_pred cccchhHHHHHHhhc-------CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEec
Confidence 999999999998765 5779999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhccc
Q 007280 462 DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQE 529 (609)
Q Consensus 462 ~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~ 529 (609)
||++||||||.|++|||||+|.+..+||||+||++|+|.+|++|.|++..|.+.+..|+..+.....+
T Consensus 358 DVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 358 DVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred chhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999888877655
No 7
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-76 Score=576.77 Aligned_cols=390 Identities=43% Similarity=0.687 Sum_probs=354.8
Q ss_pred CCCCCcccCccccC-CCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccC
Q 007280 137 GENVPPAVNTFAEI-DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR 215 (609)
Q Consensus 137 ~~~~p~~~~~f~~~-~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~ 215 (609)
...+|.|.-+|++. .-.++++++|.+.||.+|||+|.++||++++|.|++..|+||+|||++||+|-+-++......
T Consensus 211 krpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~-- 288 (629)
T KOG0336|consen 211 KRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR-- 288 (629)
T ss_pred cccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchh--
Confidence 44578899999876 788999999999999999999999999999999999999999999999999998777654321
Q ss_pred CCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccc
Q 007280 216 PRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSL 295 (609)
Q Consensus 216 ~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l 295 (609)
.....+|.+||++|||||+.|+.-+++++.+. +++.+++|||.+..+|+..++++.+|+|+||++|.++.....++|
T Consensus 289 --~~qr~~p~~lvl~ptreLalqie~e~~kysyn-g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l 365 (629)
T KOG0336|consen 289 --REQRNGPGVLVLTPTRELALQIEGEVKKYSYN-GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINL 365 (629)
T ss_pred --hhccCCCceEEEeccHHHHHHHHhHHhHhhhc-CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeee
Confidence 11345678999999999999999999998776 789999999999999999999999999999999999999999999
Q ss_pred cceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCc-ccceeE
Q 007280 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSS-TDLIVQ 374 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~-~~~i~q 374 (609)
.++.||||||||+||||+|+++|++|+-.+ .+++|++|.|||||..+.+|+..|+++++.+.++..+.. ...+.|
T Consensus 366 ~siTYlVlDEADrMLDMgFEpqIrkilldi----RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ 441 (629)
T KOG0336|consen 366 ASITYLVLDEADRMLDMGFEPQIRKILLDI----RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQ 441 (629)
T ss_pred eeeEEEEecchhhhhcccccHHHHHHhhhc----CCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeee
Confidence 999999999999999999999999999998 788999999999999999999999999999998876654 456777
Q ss_pred EEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCC
Q 007280 375 RVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK 454 (609)
Q Consensus 375 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~ 454 (609)
.+.+..+.+|...+-.++.. + ..+.|+||||..+-.|+.|..-|+..++.+..|||...|.+|+.+++.|++|+
T Consensus 442 ~i~v~~d~~k~~~~~~f~~~-m-----s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~ 515 (629)
T KOG0336|consen 442 NIIVTTDSEKLEIVQFFVAN-M-----SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGE 515 (629)
T ss_pred eEEecccHHHHHHHHHHHHh-c-----CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCc
Confidence 77555566666444444333 2 24788999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcccchHHH
Q 007280 455 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVPAWL 534 (609)
Q Consensus 455 ~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~vp~~l 534 (609)
.+||||||+++||||+|+++||+|||+|.++++|+||+||+||+|++|.+++|++.+|...+..|+++|++++|+||+.|
T Consensus 516 vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL 595 (629)
T KOG0336|consen 516 VRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDEL 595 (629)
T ss_pred eEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 007280 535 NRYASRA 541 (609)
Q Consensus 535 ~~~a~~~ 541 (609)
..||++-
T Consensus 596 ~~mAery 602 (629)
T KOG0336|consen 596 VRMAERY 602 (629)
T ss_pred HHHHHHH
Confidence 9999864
No 8
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.3e-75 Score=569.73 Aligned_cols=393 Identities=41% Similarity=0.734 Sum_probs=369.2
Q ss_pred ccccCCCCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhc
Q 007280 133 VETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQY 212 (609)
Q Consensus 133 v~~~~~~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~ 212 (609)
+.+.++.+|+|+.+|.++.++..+++.++..|+.+|||+|.+.||.++++||+|-.|-||||||++|.+|++...+++..
T Consensus 158 I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~ 237 (610)
T KOG0341|consen 158 ILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEM 237 (610)
T ss_pred EEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999877776543
Q ss_pred ccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccC------CeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHH
Q 007280 213 VQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT------GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVD 286 (609)
Q Consensus 213 ~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~------~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~ 286 (609)
.-+ ..+..+|..||+||+||||.|+++.+..|+... .++..+++||.+..+|+..+.++.+|+|+||+||.|
T Consensus 238 ~lP--f~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~D 315 (610)
T KOG0341|consen 238 MLP--FARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMD 315 (610)
T ss_pred cCc--cccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHH
Confidence 221 345678999999999999999999988875432 478899999999999999999999999999999999
Q ss_pred HHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccC
Q 007280 287 LLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVG 366 (609)
Q Consensus 287 ~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~ 366 (609)
+|.+..++|.-++||+|||||||+||||+.+|+.|+..+ +..+|+++||||+|+.+|.+++..|.+++.+.+++.+
T Consensus 316 mL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~F----K~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAG 391 (610)
T KOG0341|consen 316 MLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFF----KGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG 391 (610)
T ss_pred HHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHH----hhhhheeeeeccccHHHHHHHHhhcccceEEeccccc
Confidence 999999999999999999999999999999999999999 7789999999999999999999999999999999999
Q ss_pred CcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHH
Q 007280 367 SSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELA 446 (609)
Q Consensus 367 ~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~ 446 (609)
..+-++.|.++++..+.|..+|++.|.+. ..++||||+.+..++.++++|-..|+.++.|||+..|++|...
T Consensus 392 AAsldViQevEyVkqEaKiVylLeCLQKT--------~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~a 463 (610)
T KOG0341|consen 392 AASLDVIQEVEYVKQEAKIVYLLECLQKT--------SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYA 463 (610)
T ss_pred ccchhHHHHHHHHHhhhhhhhHHHHhccC--------CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHH
Confidence 99999999999999999999999999765 6779999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCC-ChhhHHHHHHHHHH
Q 007280 447 LRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEN-NMSLARPLTELMQE 525 (609)
Q Consensus 447 ~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~-~~~~~~~l~~~l~~ 525 (609)
++.|+.|+.+|||||||++.|||+|++.||||||+|..+++|+||||||||.|++|.+++|++.+ +...+-+|..+|.+
T Consensus 464 i~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~E 543 (610)
T KOG0341|consen 464 IEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQE 543 (610)
T ss_pred HHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999975 56778899999999
Q ss_pred hcccchHHHHHHHh
Q 007280 526 ANQEVPAWLNRYAS 539 (609)
Q Consensus 526 ~~q~vp~~l~~~a~ 539 (609)
+.|+||+.|.+++.
T Consensus 544 akQ~vP~~L~~L~~ 557 (610)
T KOG0341|consen 544 AKQEVPPVLAELAG 557 (610)
T ss_pred hhccCCHHHHHhCC
Confidence 99999999999984
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-71 Score=600.78 Aligned_cols=373 Identities=44% Similarity=0.687 Sum_probs=341.8
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccc
Q 007280 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (609)
Q Consensus 145 ~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~ 224 (609)
..|++++|++.+++++.+++|..|||||.++||.++.++|++++|+||||||+||++|+++++...... ...+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~-------~~~~ 101 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVER-------KYVS 101 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccccc-------CCCc
Confidence 679999999999999999999999999999999999999999999999999999999999997643110 0111
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccC-CeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEe
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
+||++||||||.||++++.+|+... ++++++++||.+...+...+.++++|||+||+||+|++++..+.++.+.+|||
T Consensus 102 -aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 102 -ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred -eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 8999999999999999999999988 79999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCC--cccceeEEEEEEec
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGS--STDLIVQRVEFVHE 381 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~--~~~~i~q~~~~~~~ 381 (609)
||||+|++|||.+++..|+..+ +.++|+++||||+|..+..++..++.++..+.+..... ....+.|.+..+..
T Consensus 181 DEADrmLd~Gf~~~i~~I~~~~----p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~ 256 (513)
T COG0513 181 DEADRMLDMGFIDDIEKILKAL----PPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES 256 (513)
T ss_pred ccHhhhhcCCCHHHHHHHHHhC----CcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCC
Confidence 9999999999999999999999 66899999999999999999999999999888875554 78899999999998
Q ss_pred cc-hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEE
Q 007280 382 SD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA 460 (609)
Q Consensus 382 ~~-k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVa 460 (609)
.. |...|..++.... ..++||||+|++.++.|+..|...++.+..|||+|+|++|+++++.|++|+.+||||
T Consensus 257 ~~~k~~~L~~ll~~~~-------~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVa 329 (513)
T COG0513 257 EEEKLELLLKLLKDED-------EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVA 329 (513)
T ss_pred HHHHHHHHHHHHhcCC-------CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 76 8888887776543 446999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCC-ChhhHHHHHHHHHHh---cccchHHHHH
Q 007280 461 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEN-NMSLARPLTELMQEA---NQEVPAWLNR 536 (609)
Q Consensus 461 T~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~-~~~~~~~l~~~l~~~---~q~vp~~l~~ 536 (609)
|||++||||||+|++|||||+|.+++.|+||||||||+|++|.+++|+++. +...+..+.+.+... .+.+|.+...
T Consensus 330 TDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~~ 409 (513)
T COG0513 330 TDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEPE 409 (513)
T ss_pred echhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchhh
Confidence 999999999999999999999999999999999999999999999999986 888899998888665 3466655443
No 10
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-71 Score=522.47 Aligned_cols=375 Identities=33% Similarity=0.556 Sum_probs=353.2
Q ss_pred CcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCc
Q 007280 141 PPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSR 220 (609)
Q Consensus 141 p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~ 220 (609)
-.++.+|++++|.++|++.+...||++|..+|+.||+.|+.++|+|++|+.|+|||.+|.+-+++.+--...
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r-------- 94 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVR-------- 94 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccc--------
Confidence 345678999999999999999999999999999999999999999999999999999998888766543221
Q ss_pred cccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEE
Q 007280 221 TVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 221 ~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
..++|||+||||||.|+.+.+..+....++++..+.||.+..++++.+..+++++.+|||++++++++..+..+.+++
T Consensus 95 --~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkm 172 (400)
T KOG0328|consen 95 --ETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKM 172 (400)
T ss_pred --eeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeE
Confidence 234999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred EEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEe
Q 007280 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH 380 (609)
Q Consensus 301 lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~ 380 (609)
|||||||.||+.+|.+++..|+..+ |+..|++++|||+|.++.++.+.|+.+++.+.+.+.+...+.+.|.+..++
T Consensus 173 lVLDEaDemL~kgfk~Qiydiyr~l----p~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve 248 (400)
T KOG0328|consen 173 LVLDEADEMLNKGFKEQIYDIYRYL----PPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE 248 (400)
T ss_pred EEeccHHHHHHhhHHHHHHHHHHhC----CCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec
Confidence 9999999999999999999999999 889999999999999999999999999999999999999999999999988
Q ss_pred ccc-hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEE
Q 007280 381 ESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 459 (609)
Q Consensus 381 ~~~-k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILV 459 (609)
.++ |...|.++..... -...+|||+|++.+++|.+.|.+.++.+..+||+|+|++|++++++|++|+.+|||
T Consensus 249 ~EewKfdtLcdLYd~Lt-------ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLi 321 (400)
T KOG0328|consen 249 KEEWKFDTLCDLYDTLT-------ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLI 321 (400)
T ss_pred hhhhhHhHHHHHhhhhe-------hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEE
Confidence 777 8888888876654 45689999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcccchHHHHH
Q 007280 460 ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVPAWLNR 536 (609)
Q Consensus 460 aT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~vp~~l~~ 536 (609)
+|||.+||+|+|.|++|||||+|.+.+.|+|||||.||.|++|.++-|+..+|...++++.+++.....+.|..+.+
T Consensus 322 tTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad 398 (400)
T KOG0328|consen 322 TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVAD 398 (400)
T ss_pred EechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987654
No 11
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-71 Score=557.32 Aligned_cols=361 Identities=38% Similarity=0.591 Sum_probs=335.4
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 144 ~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
..+|.+++|+..|++.+..+||.+|||||..+||..+-++|++.||.||||||.||++|+|.+|+-.+.. ...
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-------~~~ 252 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-------VAA 252 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-------Ccc
Confidence 4589999999999999999999999999999999999999999999999999999999999999865432 122
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc-cccccceEEEE
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYLA 302 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~-~~~l~~i~~lV 302 (609)
.+||||+|||||+.|++...++++..+.+.+++++||.+...|...|...+||||+|||||+|+|.+. .+++++|.+||
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLv 332 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLV 332 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEE
Confidence 45999999999999999999999999999999999999999999999999999999999999999874 57899999999
Q ss_pred eccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEe--
Q 007280 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH-- 380 (609)
Q Consensus 303 lDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~-- 380 (609)
||||||||+.+|..++..|+..| +.++|++|||||++.++.+|+...|.+|+.+.+.........+.|.|.-+.
T Consensus 333 lDEADRMLeegFademnEii~lc----pk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~ 408 (691)
T KOG0338|consen 333 LDEADRMLEEGFADEMNEIIRLC----PKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPK 408 (691)
T ss_pred echHHHHHHHHHHHHHHHHHHhc----cccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccc
Confidence 99999999999999999999999 899999999999999999999999999999999988888888888887664
Q ss_pred -ccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEE
Q 007280 381 -ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 459 (609)
Q Consensus 381 -~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILV 459 (609)
+..+...|..++...+ ...+|||+.|++.|..|.-+|-..|+.+.-+||.++|.+|-+.++.|++.+++|||
T Consensus 409 re~dRea~l~~l~~rtf-------~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLi 481 (691)
T KOG0338|consen 409 REGDREAMLASLITRTF-------QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLI 481 (691)
T ss_pred cccccHHHHHHHHHHhc-------ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEE
Confidence 3345556666776665 56699999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHH
Q 007280 460 ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTEL 522 (609)
Q Consensus 460 aT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~ 522 (609)
|||+++|||||+.|.+||||++|.+++.|+||+|||+|+|+.|.+++|+.+.+..+++.+++-
T Consensus 482 aTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 482 ATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred EechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999888887665
No 12
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=8.5e-70 Score=548.03 Aligned_cols=365 Identities=35% Similarity=0.542 Sum_probs=335.4
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcc
Q 007280 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (609)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~ 221 (609)
.....|++..|++...++|.+++|+++|++|+.+|+.++.++|+++.|.||+|||+|||||+++.+++.+...+
T Consensus 79 ~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r------ 152 (543)
T KOG0342|consen 79 TTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR------ 152 (543)
T ss_pred hhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC------
Confidence 34567889999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred ccceEEEEcCcHHHHHHHHHHHHHhhccC-CeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccc-ccccceE
Q 007280 222 VYPLALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-VSLQMIR 299 (609)
Q Consensus 222 ~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~-~~l~~i~ 299 (609)
.+..+||||||||||.|++.+++++.+.. .+.+.+++||+....+...+.++|+|+|||||||+|+|++.. +.+..++
T Consensus 153 ~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k 232 (543)
T KOG0342|consen 153 NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLK 232 (543)
T ss_pred CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccc
Confidence 33559999999999999999999998877 899999999999999999999999999999999999999854 4566778
Q ss_pred EEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcC-cEEEEecc--cCCcccceeEEE
Q 007280 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN-YIFLAVGR--VGSSTDLIVQRV 376 (609)
Q Consensus 300 ~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~-~~~~~~~~--~~~~~~~i~q~~ 376 (609)
++|+||||+++++||+.+|.+|+..+ +..+|+++||||.+.++++++...|.. ++++.+.. ...+.+.+.|.+
T Consensus 233 ~lvlDEADrlLd~GF~~di~~Ii~~l----pk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgy 308 (543)
T KOG0342|consen 233 CLVLDEADRLLDIGFEEDVEQIIKIL----PKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGY 308 (543)
T ss_pred eeEeecchhhhhcccHHHHHHHHHhc----cccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceE
Confidence 99999999999999999999999999 789999999999999999999988875 66666644 345567899999
Q ss_pred EEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCc
Q 007280 377 EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTP 456 (609)
Q Consensus 377 ~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ 456 (609)
.+++...+...++.+|++... ..++||||+|...+.++++.|....++|..|||.++|..|+.++.+|++.+.-
T Consensus 309 vv~~~~~~f~ll~~~LKk~~~------~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg 382 (543)
T KOG0342|consen 309 VVAPSDSRFSLLYTFLKKNIK------RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG 382 (543)
T ss_pred EeccccchHHHHHHHHHHhcC------CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc
Confidence 999988888999999988762 37899999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHH
Q 007280 457 ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTEL 522 (609)
Q Consensus 457 ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~ 522 (609)
|||||||++||+|||+|++||+||+|.++++||||+|||||.|+.|.+++|+.+.+..+++.|.++
T Consensus 383 IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~l 448 (543)
T KOG0342|consen 383 ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKL 448 (543)
T ss_pred eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999888887643
No 13
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.2e-68 Score=583.00 Aligned_cols=395 Identities=36% Similarity=0.622 Sum_probs=359.9
Q ss_pred CcccccCCCCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhh
Q 007280 131 IPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMRE 210 (609)
Q Consensus 131 ~~v~~~~~~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~ 210 (609)
..+.+.+...|.|+.+|++++|++.++++|...+|.+|||+|.++||.+++++|+|++||||||||++|++|++.+++..
T Consensus 107 ~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~ 186 (518)
T PLN00206 107 LEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTI 186 (518)
T ss_pred CCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhh
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred hcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHc
Q 007280 211 QYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER 290 (609)
Q Consensus 211 ~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~ 290 (609)
.... .....+|++|||+||||||.|++++++.+....++++..++||.....+...+..+++|+|+||++|++++.+
T Consensus 187 ~~~~---~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~ 263 (518)
T PLN00206 187 RSGH---PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK 263 (518)
T ss_pred cccc---ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc
Confidence 2111 1112457899999999999999999999998888999999999999999888888999999999999999998
Q ss_pred ccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCccc
Q 007280 291 ARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTD 370 (609)
Q Consensus 291 ~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 370 (609)
..+.++++++|||||||+|++++|.+++..|+..+ +.+|+++||||++.+++.++..++.+++.+.+........
T Consensus 264 ~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-----~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~ 338 (518)
T PLN00206 264 HDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-----SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNK 338 (518)
T ss_pred CCccchheeEEEeecHHHHhhcchHHHHHHHHHhC-----CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCc
Confidence 88889999999999999999999999999999887 2469999999999999999999999999988887777777
Q ss_pred ceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHh-CCCCcEEecCccCHHHHHHHHHh
Q 007280 371 LIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYM-NGFPATTIHGDRTQQERELALRS 449 (609)
Q Consensus 371 ~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~-~~~~~~~ihg~~~~~~R~~~~~~ 449 (609)
.+.+.+.++....|...|++++..... ...++||||+++..++.|++.|.. .++.+..+||+|++.+|..+++.
T Consensus 339 ~v~q~~~~~~~~~k~~~l~~~l~~~~~-----~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~ 413 (518)
T PLN00206 339 AVKQLAIWVETKQKKQKLFDILKSKQH-----FKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKS 413 (518)
T ss_pred ceeEEEEeccchhHHHHHHHHHHhhcc-----cCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHH
Confidence 788888888888888888888765431 145799999999999999999975 58999999999999999999999
Q ss_pred hhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhccc
Q 007280 450 FKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQE 529 (609)
Q Consensus 450 F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~ 529 (609)
|++|+.+|||||++++||||||+|++|||||+|.++++|+||+|||||.|+.|.|++|++.++...+..|.++|+.+.++
T Consensus 414 Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~ 493 (518)
T PLN00206 414 FLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAA 493 (518)
T ss_pred HHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHH
Q 007280 530 VPAWLNRYA 538 (609)
Q Consensus 530 vp~~l~~~a 538 (609)
+|++|.++.
T Consensus 494 vp~~l~~~~ 502 (518)
T PLN00206 494 IPRELANSR 502 (518)
T ss_pred CCHHHHhCh
Confidence 999998865
No 14
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.4e-67 Score=566.49 Aligned_cols=366 Identities=43% Similarity=0.698 Sum_probs=330.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccce
Q 007280 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (609)
Q Consensus 146 ~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~ 225 (609)
+|++++|++.+.+.|.+++|..|||+|+++||.+++++|+|++||||||||++|++|+++.+........ ....++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~----~~~~~~ 77 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAK----GRRPVR 77 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccc----cCCCce
Confidence 5899999999999999999999999999999999999999999999999999999999999876432111 112356
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEecc
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 305 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDE 305 (609)
+|||+||++||.|+.++++++....++++..++|+.+...+...+...++|+|+||++|++++....+.++++++|||||
T Consensus 78 aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDE 157 (456)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE 157 (456)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeec
Confidence 99999999999999999999998889999999999999988888888999999999999999988888899999999999
Q ss_pred chhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchH
Q 007280 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKR 385 (609)
Q Consensus 306 ah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~ 385 (609)
||+|++++|...++.++..+ +..+|+++||||++.++..++..++.++..+.+.........+.+.+.+++...+.
T Consensus 158 ah~ll~~~~~~~i~~il~~l----~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 233 (456)
T PRK10590 158 ADRMLDMGFIHDIRRVLAKL----PAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKR 233 (456)
T ss_pred HHHHhccccHHHHHHHHHhC----CccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHH
Confidence 99999999999999999888 67789999999999999999999999998887776666667788888777766665
Q ss_pred HHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccc
Q 007280 386 SHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAA 465 (609)
Q Consensus 386 ~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~ 465 (609)
..|..++.. ....++||||+++..++.|++.|...++.+..+||+|++.+|.++++.|++|+++|||||++++
T Consensus 234 ~~l~~l~~~-------~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~ 306 (456)
T PRK10590 234 ELLSQMIGK-------GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAA 306 (456)
T ss_pred HHHHHHHHc-------CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHh
Confidence 555444432 1256799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHh
Q 007280 466 RGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEA 526 (609)
Q Consensus 466 ~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~ 526 (609)
+|||||+|++|||||+|.++++|+||+|||||.|..|.|++|++.++...++.+.+++...
T Consensus 307 rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 307 RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred cCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999888888877644
No 15
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-67 Score=575.46 Aligned_cols=417 Identities=41% Similarity=0.682 Sum_probs=382.1
Q ss_pred ccccCCCCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhc
Q 007280 133 VETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQY 212 (609)
Q Consensus 133 v~~~~~~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~ 212 (609)
+.+.+..+|.|+.+|...++...++..+++++|.+|||||.+|||+|+.++|+|.+|.||||||++|++|++.+++.+..
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999977766543
Q ss_pred ccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccc
Q 007280 213 VQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR 292 (609)
Q Consensus 213 ~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~ 292 (609)
. ....+|.+|||+|||+|+.||++++++|+..++++++++||+..+.+++..+++++.|+|||||+++|++-...
T Consensus 433 ~-----~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~ 507 (997)
T KOG0334|consen 433 L-----EEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANS 507 (997)
T ss_pred h-----hhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcC
Confidence 3 33558999999999999999999999999999999999999999999999999999999999999999886533
Q ss_pred ---ccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcc
Q 007280 293 ---VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSST 369 (609)
Q Consensus 293 ---~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 369 (609)
.++.++.|||+||||+|++++|+|++..|++.+ ++.+|+++||||+|..+..++...+..|+.+.++.....+
T Consensus 508 grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nl----rpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~ 583 (997)
T KOG0334|consen 508 GRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNL----RPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVC 583 (997)
T ss_pred CccccccccceeeechhhhhheeccCcccchHHhhc----chhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEe
Confidence 367777899999999999999999999999999 7889999999999999999999999999999999888888
Q ss_pred cceeEEEEEEe-ccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHH
Q 007280 370 DLIVQRVEFVH-ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALR 448 (609)
Q Consensus 370 ~~i~q~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~ 448 (609)
..+.|.+.++. +..|...|+++|..... ..++||||.....|+.|.+.|...+++|..+||+.+|.+|..+++
T Consensus 584 k~V~q~v~V~~~e~eKf~kL~eLl~e~~e------~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~ 657 (997)
T KOG0334|consen 584 KEVTQVVRVCAIENEKFLKLLELLGERYE------DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIE 657 (997)
T ss_pred ccceEEEEEecCchHHHHHHHHHHHHHhh------cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHH
Confidence 99999999999 88999999999998763 677999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcc
Q 007280 449 SFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQ 528 (609)
Q Consensus 449 ~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q 528 (609)
+|+++.+.+||||+++++|||++++.+|||||+|+..++|+||.|||||+|++|.|++|+++.+..++.+|.+.|....+
T Consensus 658 dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~ 737 (997)
T KOG0334|consen 658 DFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQ 737 (997)
T ss_pred HHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhhccC--CCCCCCCCCCCCCCCccccCC
Q 007280 529 EVPAWLNRYASRANY--GGGKSKRSGGNRFGARDFRRD 564 (609)
Q Consensus 529 ~vp~~l~~~a~~~~~--g~~~~~~~~~~~~g~~~~r~~ 564 (609)
.+|..|+.|+.+--- ..++...+++|+|+|.+++.+
T Consensus 738 ~~P~~l~~l~~~f~~~~~~~~s~~~~~Gg~~G~g~~~~ 775 (997)
T KOG0334|consen 738 PVPKLLQALSERFKAKQKAGGSQVHGGGGFGGKGLKFD 775 (997)
T ss_pred CCchHHHHHHHHHHhhhhcccccccccCcccCCccccc
Confidence 999999988864211 112222334446777776663
No 16
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-67 Score=510.43 Aligned_cols=370 Identities=36% Similarity=0.510 Sum_probs=337.4
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 144 ~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
...|..++|++|+.+.++.+++.+|||+|+.|||.|++|+|+|-||.||||||++|.+|+++++.++.+ +
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~----------g 75 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY----------G 75 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC----------c
Confidence 356999999999999999999999999999999999999999999999999999999999999987754 3
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc----cccccceE
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA----RVSLQMIR 299 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~----~~~l~~i~ 299 (609)
.++||+.||||||.|+.+.+..+.+..++++.+++||...-.+...|.+.+||||+|||+|.+++... ...+++++
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 56999999999999999999999999999999999999999999999999999999999999999875 23588999
Q ss_pred EEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcC--cEEEEecccCCcccceeEEEE
Q 007280 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN--YIFLAVGRVGSSTDLIVQRVE 377 (609)
Q Consensus 300 ~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~--~~~~~~~~~~~~~~~i~q~~~ 377 (609)
++|+||||+|++..|.+++..+.+.+ |..+|+++||||+.+.+.++...-... ..++......+..+.+.|.|.
T Consensus 156 flVlDEADrvL~~~f~d~L~~i~e~l----P~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI 231 (442)
T KOG0340|consen 156 FLVLDEADRVLAGCFPDILEGIEECL----PKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYI 231 (442)
T ss_pred eEEecchhhhhccchhhHHhhhhccC----CCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhhee
Confidence 99999999999999999999999988 777999999999999988876655544 233444455566788999999
Q ss_pred EEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcE
Q 007280 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPI 457 (609)
Q Consensus 378 ~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~I 457 (609)
++....|..+|+.+|...... ....++||+++..+|+.|...|....+.+..+|+.|+|.+|..++.+|+++..+|
T Consensus 232 ~~~~~vkdaYLv~~Lr~~~~~----~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~i 307 (442)
T KOG0340|consen 232 LVSIDVKDAYLVHLLRDFENK----ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARI 307 (442)
T ss_pred ecchhhhHHHHHHHHhhhhhc----cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccE
Confidence 999999999999999876532 3667999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcccch
Q 007280 458 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVP 531 (609)
Q Consensus 458 LVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~vp 531 (609)
||||||++||||||.|++|||||+|.++.+|+||+||++|+|+.|.+++|+++.|.+++..+++-+.....|.+
T Consensus 308 liaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 308 LIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred EEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999888876665543
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.1e-65 Score=561.72 Aligned_cols=370 Identities=38% Similarity=0.586 Sum_probs=327.5
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccc
Q 007280 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (609)
Q Consensus 145 ~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~ 224 (609)
.+|++++|++.|+++|..++|.+|||+|+++||.+++++|+|++||||||||++|++|++++++....... .....+
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~---~~~~~~ 85 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALAD---RKPEDP 85 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccc---cccCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999876432110 112246
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc-cccccceEEEEe
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYLAL 303 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~-~~~l~~i~~lVl 303 (609)
++|||+||+|||.|+++.+.+|....++++..++|+.....+...+..+++|||+||++|++++.+. .+.+..+++|||
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 7999999999999999999999998999999999999998888888888999999999999999775 467889999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccc
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~ 383 (609)
||||+|++++|..++..|+..+.. ...+|+++||||++..+..++..++.++..+.+.........+.+.+.......
T Consensus 166 DEAh~lld~gf~~~i~~il~~lp~--~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~ 243 (572)
T PRK04537 166 DEADRMFDLGFIKDIRFLLRRMPE--RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEE 243 (572)
T ss_pred cCHHHHhhcchHHHHHHHHHhccc--ccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHH
Confidence 999999999999999999988732 126799999999999999999999988877666555555566777777777667
Q ss_pred hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccc
Q 007280 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 463 (609)
Q Consensus 384 k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v 463 (609)
|...|+.++... ...++||||++++.++.|++.|...++.+..|||+|++.+|+++++.|++|+.+|||||++
T Consensus 244 k~~~L~~ll~~~-------~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv 316 (572)
T PRK04537 244 KQTLLLGLLSRS-------EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDV 316 (572)
T ss_pred HHHHHHHHHhcc-------cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehh
Confidence 766666666432 2567999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHh
Q 007280 464 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEA 526 (609)
Q Consensus 464 ~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~ 526 (609)
+++|||||+|++|||||+|.++++|+||+|||||.|++|.|++|+++.+...+..+.+.+...
T Consensus 317 ~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 317 AARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred hhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999998888888887776543
No 18
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-66 Score=524.41 Aligned_cols=378 Identities=33% Similarity=0.524 Sum_probs=332.2
Q ss_pred CCCCcccCccccCCCCHHHHHHHH-HCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCC
Q 007280 138 ENVPPAVNTFAEIDLGEALNLNIR-RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRP 216 (609)
Q Consensus 138 ~~~p~~~~~f~~~~l~~~l~~~i~-~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~ 216 (609)
.+.|-.-..|.+++|++.+..+|+ .+++..||.+|+++||.+++++|++|.++||||||++|++|+++.|.... +
T Consensus 129 ~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~----~ 204 (708)
T KOG0348|consen 129 SEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAME----P 204 (708)
T ss_pred cccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcC----c
Confidence 344555678999999999999997 57999999999999999999999999999999999999999999987654 2
Q ss_pred CCCccccceEEEEcCcHHHHHHHHHHHHHhhcc-CCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc-ccc
Q 007280 217 RGSRTVYPLALILAPTRELSSQIHVEAKKFSYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVS 294 (609)
Q Consensus 217 ~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~-~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~-~~~ 294 (609)
+-.+..+|.+|||+||||||.|+++.+.++.+. ..|-.++++||.....+...|+++++|||+|||||+|+|++. .+.
T Consensus 205 ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~ 284 (708)
T KOG0348|consen 205 KIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIK 284 (708)
T ss_pred cccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchhe
Confidence 345788999999999999999999999999764 456778889999999999999999999999999999999885 457
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCC---------CCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEeccc
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM---------PPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRV 365 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~---------~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~ 365 (609)
++.++||||||||+++++||+.+|..|++.+.. ..+..+|.+|+|||+.+.+.+|+..-|.+|+.|..+..
T Consensus 285 ~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s 364 (708)
T KOG0348|consen 285 FSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKS 364 (708)
T ss_pred eeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccch
Confidence 889999999999999999999999999988732 11235799999999999999999999999998883211
Q ss_pred -------------------------CCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHH
Q 007280 366 -------------------------GSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADAL 420 (609)
Q Consensus 366 -------------------------~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l 420 (609)
....+.+.|.|.+|+...+...|..+|........ ..++|||+.+.+.+++.
T Consensus 365 ~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~---~qk~iVF~S~~d~VeFH 441 (708)
T KOG0348|consen 365 HSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEE---KQKMIVFFSCSDSVEFH 441 (708)
T ss_pred hhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhh---hceeEEEEechhHHHHH
Confidence 12335577889999999999999999888776543 55899999999999999
Q ss_pred HHHHHhC----------------------CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEE
Q 007280 421 EHWLYMN----------------------GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN 478 (609)
Q Consensus 421 ~~~L~~~----------------------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~ 478 (609)
+++|... +..+..+||.|+|++|+.++..|...+..||+||||++||||+|+|.+||+
T Consensus 442 y~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ 521 (708)
T KOG0348|consen 442 YSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ 521 (708)
T ss_pred HHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE
Confidence 9988532 345677999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHH
Q 007280 479 FDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTEL 522 (609)
Q Consensus 479 ~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~ 522 (609)
||+|.+.++|+||||||+|+|.+|.+++|+.+.+.++++.|...
T Consensus 522 Yd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 522 YDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred eCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 99999999999999999999999999999999998888776543
No 19
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-64 Score=544.04 Aligned_cols=373 Identities=36% Similarity=0.560 Sum_probs=332.3
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccc
Q 007280 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (609)
Q Consensus 143 ~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~ 222 (609)
+..+|++++|++.+.+.+..++|..|||+|+++||.+++++|++++||||||||++|++|+++.++...... .....
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~---~~~~~ 82 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE---DRKVN 82 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc---ccccC
Confidence 346899999999999999999999999999999999999999999999999999999999999998653211 11123
Q ss_pred cceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEE
Q 007280 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (609)
Q Consensus 223 ~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lV 302 (609)
.|++|||+||+|||.|+++++.++....++++.+++||.....+...+..+++|+|+||++|++++....+.++.+++||
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lV 162 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVV 162 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEE
Confidence 57899999999999999999999999999999999999998888888888999999999999999998888899999999
Q ss_pred eccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEecc
Q 007280 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES 382 (609)
Q Consensus 303 lDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~ 382 (609)
|||||+|++++|..++..++..+.. ...+++++||||++..+..++..++.++..+.+.........+.+.+.+....
T Consensus 163 iDEad~l~~~~f~~~i~~i~~~~~~--~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~ 240 (423)
T PRK04837 163 LDEADRMFDLGFIKDIRWLFRRMPP--ANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNE 240 (423)
T ss_pred EecHHHHhhcccHHHHHHHHHhCCC--ccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHH
Confidence 9999999999999999999988732 24578899999999999999999999988888766665566677766666666
Q ss_pred chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc
Q 007280 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 462 (609)
Q Consensus 383 ~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~ 462 (609)
.|...|..++... ...++||||+++..|+.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+
T Consensus 241 ~k~~~l~~ll~~~-------~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd 313 (423)
T PRK04837 241 EKMRLLQTLIEEE-------WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD 313 (423)
T ss_pred HHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec
Confidence 6666666665432 256799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhc
Q 007280 463 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEAN 527 (609)
Q Consensus 463 v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~ 527 (609)
++++|||||+|++|||||+|.++++|+||+||+||.|+.|.|++|+++.+...+..+.+.+....
T Consensus 314 v~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~ 378 (423)
T PRK04837 314 VAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSI 378 (423)
T ss_pred hhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999998888888877765544
No 20
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-65 Score=510.91 Aligned_cols=356 Identities=35% Similarity=0.535 Sum_probs=320.7
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 146 TFAEID--LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 146 ~f~~~~--l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
.|+++. |.++|++.+..+||.++||+|..+||.++.++|+++.|+||||||+||++|++..+.......++. .
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~-----~ 79 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG-----Q 79 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc-----c
Confidence 466664 669999999999999999999999999999999999999999999999999999986654332221 2
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhcc-CCeEEEEEECCcChHHHHHHHhc-CCCEEEeChHHHHHHHHccc--ccccceE
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQ-TGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERAR--VSLQMIR 299 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~-~~i~~~~~~gg~~~~~~~~~l~~-~~~IlV~Tpg~L~~~l~~~~--~~l~~i~ 299 (609)
.-+|||+||||||.||.+.+..|... ..+++.+++||.+..+++..+.+ +++|+|+|||||.+++++.. +++.++.
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccc
Confidence 34999999999999999999999866 78999999999999999888754 78999999999999998843 4566999
Q ss_pred EEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCC--cccceeEEEE
Q 007280 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGS--STDLIVQRVE 377 (609)
Q Consensus 300 ~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~--~~~~i~q~~~ 377 (609)
+|||||||+++||||+.++..|+..+ |..++|=|||||...++.++....|.+++.+.+..... ....+...|.
T Consensus 160 ~LVLDEADrLldmgFe~~~n~ILs~L----PKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~ 235 (567)
T KOG0345|consen 160 ILVLDEADRLLDMGFEASVNTILSFL----PKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYL 235 (567)
T ss_pred eEEecchHhHhcccHHHHHHHHHHhc----ccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceee
Confidence 99999999999999999999999999 88999999999999999999999999999999887665 5666888889
Q ss_pred EEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC--CCCcEEecCccCHHHHHHHHHhhhcCCC
Q 007280 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKT 455 (609)
Q Consensus 378 ~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~ 455 (609)
.|....|...|+++|.... ..++|||++|...+++....|... ..+++.|||.|.+..|..+++.|.+...
T Consensus 236 v~~a~eK~~~lv~~L~~~~-------~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~ 308 (567)
T KOG0345|consen 236 VCEADEKLSQLVHLLNNNK-------DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSN 308 (567)
T ss_pred EecHHHHHHHHHHHHhccc-------cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccC
Confidence 9999999999999997643 778999999999999999887654 6788999999999999999999999888
Q ss_pred cEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHH
Q 007280 456 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLAR 517 (609)
Q Consensus 456 ~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~ 517 (609)
.+|+||||++||||||+|++||+||+|.+++.|+||.|||+|+|+.|.|++|+.+.+..++.
T Consensus 309 ~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 309 GVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVE 370 (567)
T ss_pred ceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997655443
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=9e-64 Score=553.93 Aligned_cols=357 Identities=40% Similarity=0.625 Sum_probs=325.3
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 144 ~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
..+|.+++|++.+++.|..++|.+|||+|+++||.+++++|+|++||||||||++|++|+++.+.... ..
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~----------~~ 74 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL----------KA 74 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc----------CC
Confidence 34699999999999999999999999999999999999999999999999999999999998875321 12
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccC-CeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEE
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lV 302 (609)
|++|||+||++||.|+++++.+|.... +++++.++||.+...+...+..+++|||+||++|++++.+..+.++++++||
T Consensus 75 ~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lV 154 (629)
T PRK11634 75 PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLV 154 (629)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEE
Confidence 569999999999999999999987654 7999999999999999999989999999999999999999888899999999
Q ss_pred eccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEecc
Q 007280 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES 382 (609)
Q Consensus 303 lDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~ 382 (609)
|||||+|++++|...+..|+..+ +..+|+++||||+|+.+..++..|+.++..+.+.........+.+.+..+...
T Consensus 155 lDEAd~ml~~gf~~di~~Il~~l----p~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~ 230 (629)
T PRK11634 155 LDEADEMLRMGFIEDVETIMAQI----PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM 230 (629)
T ss_pred eccHHHHhhcccHHHHHHHHHhC----CCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechh
Confidence 99999999999999999999988 77889999999999999999999999998887776666677788888888877
Q ss_pred chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc
Q 007280 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 462 (609)
Q Consensus 383 ~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~ 462 (609)
.|...|..+|... ...++||||+|+..++.|++.|...++.+..+|++|++.+|+++++.|++|+++|||||+
T Consensus 231 ~k~~~L~~~L~~~-------~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd 303 (629)
T PRK11634 231 RKNEALVRFLEAE-------DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 (629)
T ss_pred hHHHHHHHHHHhc-------CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc
Confidence 8888877777543 245799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHH
Q 007280 463 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTE 521 (609)
Q Consensus 463 v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~ 521 (609)
++++|||+|+|++|||||+|.+++.|+||+|||||+|+.|.|++|+++.+...++.+.+
T Consensus 304 v~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~ 362 (629)
T PRK11634 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 (629)
T ss_pred hHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998776655555543
No 22
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-64 Score=513.52 Aligned_cols=360 Identities=33% Similarity=0.540 Sum_probs=329.6
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccc
Q 007280 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (609)
Q Consensus 143 ~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~ 222 (609)
.+..|+++.|+....+.|+..+|..||.||+++||..+.|+|+|..|.||||||+||++|+|++|+..+-. ...
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs------~~D 140 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS------PTD 140 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCC------CCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999976532 233
Q ss_pred cceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc-cccccceEEE
Q 007280 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYL 301 (609)
Q Consensus 223 ~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~-~~~l~~i~~l 301 (609)
+.=||||+||||||.|+++.+.++.....+.+.+++||.....+...+. .++|||||||||+.++... .++.+++.+|
T Consensus 141 GlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmL 219 (758)
T KOG0343|consen 141 GLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQML 219 (758)
T ss_pred CceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEE
Confidence 4449999999999999999999999999999999999999776666554 5899999999999999765 4678899999
Q ss_pred EeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEec--ccCCcccceeEEEEEE
Q 007280 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG--RVGSSTDLIVQRVEFV 379 (609)
Q Consensus 302 VlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~--~~~~~~~~i~q~~~~~ 379 (609)
||||||||+||||...+..|++.+ |..+|++|||||....+..+++..+.+|.++.+. .....+.++.|.|.++
T Consensus 220 vLDEADR~LDMGFk~tL~~Ii~~l----P~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v 295 (758)
T KOG0343|consen 220 VLDEADRMLDMGFKKTLNAIIENL----PKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIV 295 (758)
T ss_pred EeccHHHHHHHhHHHHHHHHHHhC----ChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEE
Confidence 999999999999999999999999 8999999999999999999999999999888876 3456778899999999
Q ss_pred eccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC--CCCcEEecCccCHHHHHHHHHhhhcCCCcE
Q 007280 380 HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKTPI 457 (609)
Q Consensus 380 ~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~I 457 (609)
+..+|...|..+|..+. ..++|||+.|.+++.++++.++.. ++++..+||.|+|..|.+++++|-..+.-|
T Consensus 296 ~l~~Ki~~L~sFI~shl-------k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~v 368 (758)
T KOG0343|consen 296 PLEDKIDMLWSFIKSHL-------KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVV 368 (758)
T ss_pred ehhhHHHHHHHHHHhcc-------ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceE
Confidence 99999999999998876 678999999999999999999875 889999999999999999999999999999
Q ss_pred EEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCC-hhhHHHHH
Q 007280 458 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENN-MSLARPLT 520 (609)
Q Consensus 458 LVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~-~~~~~~l~ 520 (609)
|+|||+++||||+|.|++||++|.|.++++||||+||++|....|.|++++++.+ ..++..|.
T Consensus 369 LF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq 432 (758)
T KOG0343|consen 369 LFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQ 432 (758)
T ss_pred EEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887 44444443
No 23
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-65 Score=490.82 Aligned_cols=370 Identities=31% Similarity=0.535 Sum_probs=344.9
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 144 ~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
-..|+++.|..+|+..|.++||++|.|+|.++||+++.|+|+++.|..|+|||.+|++|++..+-.... .
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~----------~ 153 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKN----------V 153 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcccc----------c
Confidence 357999999999999999999999999999999999999999999999999999999999988754332 2
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEe
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
..++|++||||||.|+...++.+++..++++.+..||++..+++-.+...++++|+||||++|+.++....++++.++|+
T Consensus 154 IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~ 233 (459)
T KOG0326|consen 154 IQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVM 233 (459)
T ss_pred eeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEe
Confidence 45999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccc
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~ 383 (609)
||||.||+..|.+.+.+++..+ |+.+|++|+|||+|-.+..+...+|.+|..+..- .......+.|.|.+|++..
T Consensus 234 DEADKlLs~~F~~~~e~li~~l----P~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e~q 308 (459)
T KOG0326|consen 234 DEADKLLSVDFQPIVEKLISFL----PKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEERQ 308 (459)
T ss_pred chhhhhhchhhhhHHHHHHHhC----CccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeechhh
Confidence 9999999999999999999999 8999999999999999999999999999888764 3445577899999999999
Q ss_pred hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccc
Q 007280 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 463 (609)
Q Consensus 384 k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v 463 (609)
|...|-.++.+.. -...||||++.+.++.|++.+.+.|+.|..+|+.|.|+.|..++.+|++|.++.|||||.
T Consensus 309 KvhCLntLfskLq-------INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 309 KVHCLNTLFSKLQ-------INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred hhhhHHHHHHHhc-------ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhh
Confidence 9887777776553 445899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcccchHHHH
Q 007280 464 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVPAWLN 535 (609)
Q Consensus 464 ~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~vp~~l~ 535 (609)
+.|||||+.|++|||||+|.+.++|.|||||.||.|..|.|+.+++-+|...+..+++-|.....++|..++
T Consensus 382 ~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 382 FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999988888886654
No 24
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.8e-63 Score=538.51 Aligned_cols=360 Identities=38% Similarity=0.605 Sum_probs=327.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccc
Q 007280 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (609)
Q Consensus 145 ~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~ 224 (609)
.+|++++|++.+.+.+..++|.+|||+|+++||.+++++|++++||||||||++|++|+++.+.... ..+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~----------~~~ 73 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR----------FRV 73 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc----------CCc
Confidence 4699999999999999999999999999999999999999999999999999999999999875322 124
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccC-CeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEe
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
++|||+||++||.|++++++++.... ++++..++||.+...+...+..+++|+|+||++|.+++.+..+.++++++|||
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lVi 153 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVL 153 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEE
Confidence 59999999999999999999987643 78999999999999999999999999999999999999988888999999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccc
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~ 383 (609)
||||+|++++|...+..++..+ +..+|+++||||+++.+..++..++.++..+.+.... ....+.+.+..+....
T Consensus 154 DEad~~l~~g~~~~l~~i~~~~----~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~ 228 (460)
T PRK11776 154 DEADRMLDMGFQDAIDAIIRQA----PARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDE 228 (460)
T ss_pred ECHHHHhCcCcHHHHHHHHHhC----CcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHH
Confidence 9999999999999999999988 7788999999999999999999999999888775543 3455778787777777
Q ss_pred hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccc
Q 007280 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 463 (609)
Q Consensus 384 k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v 463 (609)
|...|..++... ...++||||++++.++.+++.|...++.+..+||+|++.+|+.+++.|++|+.+|||||++
T Consensus 229 k~~~l~~ll~~~-------~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv 301 (460)
T PRK11776 229 RLPALQRLLLHH-------QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDV 301 (460)
T ss_pred HHHHHHHHHHhc-------CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecc
Confidence 777777777543 2567999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHh
Q 007280 464 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEA 526 (609)
Q Consensus 464 ~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~ 526 (609)
+++|||||++++||+||+|.+.+.|+||+|||||+|+.|.|++|+++.+...++.+.+.+...
T Consensus 302 ~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~ 364 (460)
T PRK11776 302 AARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRK 364 (460)
T ss_pred cccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999888888887776543
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.1e-61 Score=519.30 Aligned_cols=364 Identities=35% Similarity=0.572 Sum_probs=323.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccce
Q 007280 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (609)
Q Consensus 146 ~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~ 225 (609)
+|++++|++.+++.+..++|.+||++|.++|+.+++++|+|++||||+|||++|++|++++++...... ...++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~------~~~~~ 75 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRK------SGPPR 75 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccC------CCCce
Confidence 599999999999999999999999999999999999999999999999999999999999987542111 12356
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEecc
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 305 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDE 305 (609)
+|||+||++||.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|++++....+.+.++++|||||
T Consensus 76 ~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 76 ILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 99999999999999999999999999999999999998888888888899999999999999998888899999999999
Q ss_pred chhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccH-HHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEec-cc
Q 007280 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK-EIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE-SD 383 (609)
Q Consensus 306 ah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~-~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~-~~ 383 (609)
||+|++++|...+..+...+ +...|+++||||++. .+..++..++.+++.+.+.........+.+.+..++. ..
T Consensus 156 ah~~l~~~~~~~~~~i~~~~----~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~ 231 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAET----RWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEH 231 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhC----ccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHH
Confidence 99999999999999998887 556799999999985 5788888888888888776666666667776666553 33
Q ss_pred hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccc
Q 007280 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 463 (609)
Q Consensus 384 k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v 463 (609)
|...|..++.. ....++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||++
T Consensus 232 k~~~l~~l~~~-------~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~ 304 (434)
T PRK11192 232 KTALLCHLLKQ-------PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDV 304 (434)
T ss_pred HHHHHHHHHhc-------CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccc
Confidence 44444444321 12578999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHh
Q 007280 464 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEA 526 (609)
Q Consensus 464 ~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~ 526 (609)
+++|||||+|++|||||+|.+.+.|+||+|||||.|+.|.|++|++..|...+..+.+++.+.
T Consensus 305 ~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 305 AARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred cccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999998888888777643
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-59 Score=512.47 Aligned_cols=382 Identities=40% Similarity=0.588 Sum_probs=335.0
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcc
Q 007280 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (609)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~ 221 (609)
+....|.+++|++.|.+.|..++|.+||++|+++|+.+++++|+|++++||||||++|++|+++.+.+...... ...
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~---~~~ 160 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKE---RYM 160 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccc---ccc
Confidence 34467999999999999999999999999999999999999999999999999999999999999886532110 011
Q ss_pred ccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhc-CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 222 ~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
..+++|||+||++||.|+++.++.+....++++..++||.....+.+.+.+ .++|+|+||++|++++.+....++++++
T Consensus 161 ~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~ 240 (475)
T PRK01297 161 GEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEV 240 (475)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCce
Confidence 236799999999999999999999998889999999999988888777754 6899999999999999888888999999
Q ss_pred EEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEe
Q 007280 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH 380 (609)
Q Consensus 301 lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~ 380 (609)
|||||||++++++|.+.++.|+..+.. ...+|+++||||++.++..++..++.++..+.+.........+.+.+..+.
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~--~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 318 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPR--KEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVA 318 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCC--CCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEec
Confidence 999999999999999999999988732 235799999999999999999999999888777666666667777777777
Q ss_pred ccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEE
Q 007280 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA 460 (609)
Q Consensus 381 ~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVa 460 (609)
...+...|..++... ...++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+++||||
T Consensus 319 ~~~k~~~l~~ll~~~-------~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLva 391 (475)
T PRK01297 319 GSDKYKLLYNLVTQN-------PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVA 391 (475)
T ss_pred chhHHHHHHHHHHhc-------CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEE
Confidence 777776666666432 2568999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhc-cc-chHHHH
Q 007280 461 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEAN-QE-VPAWLN 535 (609)
Q Consensus 461 T~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~-q~-vp~~l~ 535 (609)
|+++++|||||+|++||+||+|.++.+|+||+||+||.|+.|.+++|++++|..++..+.+++.... .+ .|..|.
T Consensus 392 T~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T PRK01297 392 TDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELL 468 (475)
T ss_pred ccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHh
Confidence 9999999999999999999999999999999999999999999999999999888899988887654 23 344443
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-61 Score=474.89 Aligned_cols=367 Identities=30% Similarity=0.473 Sum_probs=327.8
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccc
Q 007280 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (609)
Q Consensus 145 ~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~ 224 (609)
.+|++++|++.|+++|..+||.+||-||+.+||.+++++|+++.|.||||||+||+||+++.++..+... ....+|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~----~~e~~~ 94 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN----DGEQGP 94 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc----cccccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999876432 335678
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCC--eEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccc-ccccceEEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTG--VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-VSLQMIRYL 301 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~--i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~-~~l~~i~~l 301 (609)
.++||+||+|||.|++..+.++...+. ++++-+....+.......+...++|+|+||++|+.++..+. ..+..+++|
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~L 174 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFL 174 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeE
Confidence 899999999999999999998865443 55555554555455556667789999999999999999876 578899999
Q ss_pred EeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCc-ccceeEEEEEEe
Q 007280 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSS-TDLIVQRVEFVH 380 (609)
Q Consensus 302 VlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~-~~~i~q~~~~~~ 380 (609)
|+||||.|+..||++++..|...+ |...|.+|||||+.++++.+-..++.+|+.+.+...... ...+.|....|.
T Consensus 175 VvDEADLllsfGYeedlk~l~~~L----Pr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs 250 (569)
T KOG0346|consen 175 VVDEADLLLSFGYEEDLKKLRSHL----PRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS 250 (569)
T ss_pred EechhhhhhhcccHHHHHHHHHhC----CchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec
Confidence 999999999999999999999999 888999999999999999999999999999888765544 356778888888
Q ss_pred ccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEE
Q 007280 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA 460 (609)
Q Consensus 381 ~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVa 460 (609)
+.+|...++.+++-... .+++|||+||.+.|-.|.-+|...|++..+++|.|+.+.|..+++.|+.|.++||||
T Consensus 251 e~DKflllyallKL~LI------~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIA 324 (569)
T KOG0346|consen 251 EEDKFLLLYALLKLRLI------RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIA 324 (569)
T ss_pred cchhHHHHHHHHHHHHh------cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEE
Confidence 99999999998886553 677999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-----------------------------------cccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEE
Q 007280 461 TDV-----------------------------------AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLAT 505 (609)
Q Consensus 461 T~v-----------------------------------~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~ 505 (609)
||. ++||||+..|.+|||||+|.++..|+||+|||+|++++|.++
T Consensus 325 tD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gtal 404 (569)
T KOG0346|consen 325 TDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTAL 404 (569)
T ss_pred ccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceE
Confidence 992 569999999999999999999999999999999999999999
Q ss_pred EEEcCCChhhHHHHHHHHHH
Q 007280 506 AFFNENNMSLARPLTELMQE 525 (609)
Q Consensus 506 ~f~~~~~~~~~~~l~~~l~~ 525 (609)
+|+.+.+..-...|..++..
T Consensus 405 Sfv~P~e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 405 SFVSPKEEFGKESLESILKD 424 (569)
T ss_pred EEecchHHhhhhHHHHHHhh
Confidence 99999887766666666655
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-61 Score=492.93 Aligned_cols=378 Identities=30% Similarity=0.478 Sum_probs=321.5
Q ss_pred CCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCC-CCceeeccCCCCchHHhHHHHHHHHHhhhcccCC--
Q 007280 140 VPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRP-- 216 (609)
Q Consensus 140 ~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~-~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~-- 216 (609)
.+..++.|..+.|+..++++|..+||..|||||+.+||.+..+ .|+|..|.||||||+||-|||++.+.+.......
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3556778999999999999999999999999999999999988 8999999999999999999999966654322111
Q ss_pred -CCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccc--
Q 007280 217 -RGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-- 293 (609)
Q Consensus 217 -~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~-- 293 (609)
...+...|.+||++||||||.||..-+..++..+++++..++||....+|.+.|.+.++|||||||||+.+++....
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 01112234599999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred -cccceEEEEeccchhhhhcCCHHHHHHHHHHcC-CCCCCCceEEEEEeeccHH---------------------HHHHH
Q 007280 294 -SLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD-MPPPGMRQTMLFSATFPKE---------------------IQRLA 350 (609)
Q Consensus 294 -~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~-~~~~~~~q~il~SAT~~~~---------------------~~~l~ 350 (609)
.++.+++|||||+|||++.|....+.+|++.+. ......+|++.||||+.-. ++.++
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 678899999999999999999999999999886 3445678999999998521 23333
Q ss_pred HHh--hcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCC
Q 007280 351 SDF--LANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG 428 (609)
Q Consensus 351 ~~~--l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~ 428 (609)
... ..++.++.+.+.......+......|+..+|..+|+-+|..+ ++++|||||+++.+..|.-+|...+
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--------PGrTlVF~NsId~vKRLt~~L~~L~ 487 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY--------PGRTLVFCNSIDCVKRLTVLLNNLD 487 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec--------CCceEEEechHHHHHHHHHHHhhcC
Confidence 322 234566666655555555666666667777777766666554 7889999999999999999999999
Q ss_pred CCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEE
Q 007280 429 FPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFF 508 (609)
Q Consensus 429 ~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~ 508 (609)
++...||+.|.|.+|.+-+++|++....||||||||+||||||+|.|||||-+|.+.+.|+||.|||+|++..|..++|+
T Consensus 488 i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~ 567 (731)
T KOG0347|consen 488 IPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLC 567 (731)
T ss_pred CCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHH
Q 007280 509 NENNMSLARPLTELMQE 525 (609)
Q Consensus 509 ~~~~~~~~~~l~~~l~~ 525 (609)
.+.+...+..|.+-|..
T Consensus 568 ~P~e~~~~~KL~ktL~k 584 (731)
T KOG0347|consen 568 GPQEVGPLKKLCKTLKK 584 (731)
T ss_pred ChHHhHHHHHHHHHHhh
Confidence 99887777766665554
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.4e-57 Score=487.75 Aligned_cols=368 Identities=32% Similarity=0.536 Sum_probs=321.4
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 144 ~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
..+|++++|++.+.+++..++|..|+|+|.++|+.+++++|++++||||||||++|++|++..+.... ..
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~----------~~ 96 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL----------NA 96 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCC----------CC
Confidence 46799999999999999999999999999999999999999999999999999999999998764221 12
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEe
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
+++|||+||++|+.|+.+.+..+.....+.+..++|+.....+...+..+++|+|+||++|.+++.+....++++++||+
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvVi 176 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFIL 176 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEE
Confidence 45999999999999999999999888888899999999888888888888999999999999999888788999999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEecc-
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES- 382 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~- 382 (609)
||||++++.+|...+..++..+ +...|++++|||+++++..+...++.++..+.+.........+.+.+..+...
T Consensus 177 DEah~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (401)
T PTZ00424 177 DEADEMLSRGFKGQIYDVFKKL----PPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEE 252 (401)
T ss_pred ecHHHHHhcchHHHHHHHHhhC----CCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHH
Confidence 9999999999999998888877 66789999999999999999999988887766655444455555555544432
Q ss_pred chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc
Q 007280 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 462 (609)
Q Consensus 383 ~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~ 462 (609)
.+...+.+++... ...++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+
T Consensus 253 ~~~~~l~~~~~~~-------~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~ 325 (401)
T PTZ00424 253 WKFDTLCDLYETL-------TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD 325 (401)
T ss_pred HHHHHHHHHHHhc-------CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc
Confidence 2333334333221 246799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcccchH
Q 007280 463 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVPA 532 (609)
Q Consensus 463 v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~vp~ 532 (609)
++++|||+|++++||+||+|.++.+|+||+||+||.|+.|.|++|+++++...+..+.+.+....+++|.
T Consensus 326 ~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 326 LLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred cccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 9999999999999999999999999999999999999999999999999998888888777766665554
No 30
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-58 Score=478.51 Aligned_cols=394 Identities=32% Similarity=0.503 Sum_probs=351.0
Q ss_pred CcccccCCCCCcccCccccC----CCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHH
Q 007280 131 IPVETSGENVPPAVNTFAEI----DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISG 206 (609)
Q Consensus 131 ~~v~~~~~~~p~~~~~f~~~----~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~ 206 (609)
..+.+.|..+|.++.+|.++ .+...|++++...+|..|+|+|++|||.+++.+|+|+|||||||||++|++|++++
T Consensus 118 ~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~ 197 (593)
T KOG0344|consen 118 NKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQH 197 (593)
T ss_pred ceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHH
Confidence 35678999999999999985 58899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhh--ccCCeEEEEEECCcChHHH-HHHHhcCCCEEEeChHH
Q 007280 207 IMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS--YQTGVKVVVAYGGAPINQQ-LRELERGVDILVATPGR 283 (609)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~--~~~~i~~~~~~gg~~~~~~-~~~l~~~~~IlV~Tpg~ 283 (609)
|...... ....+.+++|+.|||+||.|++.++.++. ..+..++..........+. .......++|+|.||-+
T Consensus 198 L~~~~~~-----~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~r 272 (593)
T KOG0344|consen 198 LKDLSQE-----KHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMR 272 (593)
T ss_pred HHHhhcc-----cCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHH
Confidence 9876532 23556779999999999999999999998 5566665554433222221 12223358999999999
Q ss_pred HHHHHHccc--ccccceEEEEeccchhhhhc-CCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEE
Q 007280 284 LVDLLERAR--VSLQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFL 360 (609)
Q Consensus 284 L~~~l~~~~--~~l~~i~~lVlDEah~~l~~-gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~ 360 (609)
+..++.... +.++.|.++|+||||++++. .|..|+..|+..+.+ ++..+-+||||++.++++++...+.+.+.+
T Consensus 273 i~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s---~~i~~a~FSat~~~~VEE~~~~i~~~~~~v 349 (593)
T KOG0344|consen 273 IVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS---PDIRVALFSATISVYVEEWAELIKSDLKRV 349 (593)
T ss_pred HHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC---cchhhhhhhccccHHHHHHHHHhhccceeE
Confidence 999998765 68999999999999999998 899999999999975 457789999999999999999999999999
Q ss_pred EecccCCcccceeEEEEEEec-cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHH-HhCCCCcEEecCcc
Q 007280 361 AVGRVGSSTDLIVQRVEFVHE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL-YMNGFPATTIHGDR 438 (609)
Q Consensus 361 ~~~~~~~~~~~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L-~~~~~~~~~ihg~~ 438 (609)
.++...+....+.|...++.. ..|...+.+++..-+ ..++|||+++++.|..|.+.| ...++.+.+|||..
T Consensus 350 ivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-------~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~ 422 (593)
T KOG0344|consen 350 IVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF-------KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGER 422 (593)
T ss_pred EEecchhHhhhhhhhheeeecchhHHHHHHHHHhccC-------CCCeEEEEecHHHHHHHHHHhhhccCcceeeEeccc
Confidence 999999999999999998865 456666666666553 778999999999999999999 78899999999999
Q ss_pred CHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHH
Q 007280 439 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARP 518 (609)
Q Consensus 439 ~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~ 518 (609)
++.+|++++++|+.|+++|||||++++||||+.+|++|||||+|.+...|+|||||+||+|+.|+|++||++.|..+++.
T Consensus 423 ~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~ 502 (593)
T KOG0344|consen 423 SQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRS 502 (593)
T ss_pred chhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccchHHHHHHHh
Q 007280 519 LTELMQEANQEVPAWLNRYAS 539 (609)
Q Consensus 519 l~~~l~~~~q~vp~~l~~~a~ 539 (609)
+.+.++...-+||.|+..+..
T Consensus 503 iae~~~~sG~evpe~~m~~~k 523 (593)
T KOG0344|consen 503 IAEVMEQSGCEVPEKIMGIKK 523 (593)
T ss_pred HHHHHHHcCCcchHHHHhhhh
Confidence 999999999999999999885
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-58 Score=454.87 Aligned_cols=370 Identities=35% Similarity=0.573 Sum_probs=344.2
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 144 ~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
+.+|++++|++.|++.|...||++|+.+|+.||..+..|.|+++++++|+|||.+|++++++.+--.. ..
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~----------ke 94 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV----------KE 94 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch----------HH
Confidence 35899999999999999999999999999999999999999999999999999999999998873222 12
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH-hcCCCEEEeChHHHHHHHHcccccccceEEEE
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL-ERGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l-~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lV 302 (609)
..+|+++||||||.|+++..+.+....++++..+.||.....+...+ ...++|+|.||+++.+++....+....++++|
T Consensus 95 ~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfv 174 (397)
T KOG0327|consen 95 TQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFV 174 (397)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEe
Confidence 34999999999999999999999888899999999999888555444 44689999999999999999888888899999
Q ss_pred eccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEecc
Q 007280 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES 382 (609)
Q Consensus 303 lDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~ 382 (609)
+||||.|+..+|.++|..|++.+ +.+.|++++|||.|.++.++.+.|+.+++.+.+...+...+.+.|.+..+.+.
T Consensus 175 lDEaDEmLs~gfkdqI~~if~~l----p~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~ 250 (397)
T KOG0327|consen 175 LDEADEMLSRGFKDQIYDIFQEL----PSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKE 250 (397)
T ss_pred ecchHhhhccchHHHHHHHHHHc----CcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeecccc
Confidence 99999999999999999999999 77889999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc
Q 007280 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 462 (609)
Q Consensus 383 ~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~ 462 (609)
.|...|.++.. . -...+|||++++.++.+..+|...++.+..+|++|.+.+|+.++++|+.|..+|||.|+
T Consensus 251 ~k~~~l~dl~~-~--------~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttd 321 (397)
T KOG0327|consen 251 EKLDTLCDLYR-R--------VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTD 321 (397)
T ss_pred ccccHHHHHHH-h--------hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecc
Confidence 99999998888 2 33479999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcccchHHHHH
Q 007280 463 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVPAWLNR 536 (609)
Q Consensus 463 v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~vp~~l~~ 536 (609)
.++||||+..+..|||||+|.+.++|+||+||+||.|.+|.++.|+++.+...++++.+++.....|+|....+
T Consensus 322 l~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 322 LLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred ccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987654
No 32
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-58 Score=446.74 Aligned_cols=376 Identities=31% Similarity=0.500 Sum_probs=325.2
Q ss_pred CCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhC--CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCC
Q 007280 140 VPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIG--GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPR 217 (609)
Q Consensus 140 ~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~--~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~ 217 (609)
.--.+.+|+++.|.++|++.|..|+|.+|+.||..++|.++. .+++|++++.|+|||+||.+.+|.++--.
T Consensus 85 PlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~------- 157 (477)
T KOG0332|consen 85 PLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD------- 157 (477)
T ss_pred CccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-------
Confidence 334678999999999999999999999999999999999996 48999999999999999999999876432
Q ss_pred CCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHc-cccccc
Q 007280 218 GSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQ 296 (609)
Q Consensus 218 ~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~-~~~~l~ 296 (609)
...|.++||+||||||.|+-+.+.+..+.+++++...+-+..... -+.+ ..+|+|.||+.++|++.+ ..+.+.
T Consensus 158 ---~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r-G~~i--~eqIviGTPGtv~Dlm~klk~id~~ 231 (477)
T KOG0332|consen 158 ---VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR-GNKL--TEQIVIGTPGTVLDLMLKLKCIDLE 231 (477)
T ss_pred ---ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc-CCcc--hhheeeCCCccHHHHHHHHHhhChh
Confidence 334779999999999999999999998888888877766652110 0011 148999999999999988 667889
Q ss_pred ceEEEEeccchhhhh-cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEE
Q 007280 297 MIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQR 375 (609)
Q Consensus 297 ~i~~lVlDEah~~l~-~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~ 375 (609)
.++++|+||||.|++ .||.++-..|...+ +.+.|+|+||||+...+..++..++.++..+.+.+.......+.|.
T Consensus 232 kikvfVlDEAD~Mi~tqG~~D~S~rI~~~l----P~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQl 307 (477)
T KOG0332|consen 232 KIKVFVLDEADVMIDTQGFQDQSIRIMRSL----PRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQL 307 (477)
T ss_pred hceEEEecchhhhhhcccccccchhhhhhc----CCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhh
Confidence 999999999999986 45888888888887 7789999999999999999999999999999999999999999999
Q ss_pred EEEEec-cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCC
Q 007280 376 VEFVHE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK 454 (609)
Q Consensus 376 ~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~ 454 (609)
+..|.. .+|...|.++..... -+..||||.|++.+..|+..|...|..+..+||+|+-++|..++++|+.|+
T Consensus 308 yv~C~~~~~K~~~l~~lyg~~t-------igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~ 380 (477)
T KOG0332|consen 308 YVLCACRDDKYQALVNLYGLLT-------IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGK 380 (477)
T ss_pred eeeccchhhHHHHHHHHHhhhh-------hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCc
Confidence 988875 456666666443322 456899999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccccccCCCCCCccEEEEcCCCC------CHHHHHHHhhhcccCCCCceEEEEEcC-CChhhHHHHHHHHHH-h
Q 007280 455 TPILVATDVAARGLDIPHVAHVVNFDLPN------DIDDYVHRIGRTGRAGKSGLATAFFNE-NNMSLARPLTELMQE-A 526 (609)
Q Consensus 455 ~~ILVaT~v~~~GlDip~v~~VI~~d~p~------s~~~y~QriGRagR~g~~G~~~~f~~~-~~~~~~~~l~~~l~~-~ 526 (609)
.+|||+|+|++||||++.|++|||||+|. +.+.|+||||||||.|++|.++.|++. ...+++..|.++.+. .
T Consensus 381 ~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i 460 (477)
T KOG0332|consen 381 EKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKI 460 (477)
T ss_pred ceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999996 789999999999999999999999986 556778888888754 4
Q ss_pred cccchHHHHHHHh
Q 007280 527 NQEVPAWLNRYAS 539 (609)
Q Consensus 527 ~q~vp~~l~~~a~ 539 (609)
.+-.|+.++++.+
T Consensus 461 ~~~~~~d~~E~ek 473 (477)
T KOG0332|consen 461 KRLDPDDLDELEK 473 (477)
T ss_pred eecCCccHHHHHH
Confidence 4556777776654
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-57 Score=446.13 Aligned_cols=362 Identities=35% Similarity=0.551 Sum_probs=338.9
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 144 ~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
...|..++|+..+.++|.+.+|..|||+|++.||.+++++|++..+-||||||.||+||+++++.... ..+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s---------~~g 90 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS---------QTG 90 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc---------ccc
Confidence 46799999999999999999999999999999999999999999999999999999999999997654 223
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEe
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
.++||++|||+|+.|..+.++.+...+++++.+++||.++.+|+..+..++|||+|||++++.+.-...+.|+.+.||||
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 45999999999999999999999999999999999999999999999999999999999999887776788999999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccc
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~ 383 (609)
||||++++|||.+++.+++..+ +..+|+++||||+|+.+..+++.-+.++..+.++......+.+...+..+...+
T Consensus 171 dEadrlfemgfqeql~e~l~rl----~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~ 246 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRL----PESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE 246 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhC----CCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH
Confidence 9999999999999999999999 788899999999999999999999999999998888888888888889999999
Q ss_pred hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccc
Q 007280 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 463 (609)
Q Consensus 384 k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v 463 (609)
|...|+.++..... +..++|||.|+.+++.+...|...++.+..|+|.|.+..|..-+.+|..++..+||.||+
T Consensus 247 K~aaLl~il~~~~~------~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdv 320 (529)
T KOG0337|consen 247 KEAALLSILGGRIK------DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDV 320 (529)
T ss_pred HHHHHHHHHhcccc------ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehh
Confidence 99999999887653 556999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHH
Q 007280 464 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQ 524 (609)
Q Consensus 464 ~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~ 524 (609)
++||+|||-.+.|||||+|.+...|+||+||+.|+|+.|.+|.|+..++..++-+|..++.
T Consensus 321 aaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflg 381 (529)
T KOG0337|consen 321 AARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLG 381 (529)
T ss_pred hhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcC
Confidence 9999999999999999999999999999999999999999999999988887777765554
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.7e-54 Score=446.68 Aligned_cols=356 Identities=30% Similarity=0.481 Sum_probs=318.9
Q ss_pred cCCCCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccC
Q 007280 136 SGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR 215 (609)
Q Consensus 136 ~~~~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~ 215 (609)
+.+..+.....|+++.|-..++..|++.+|..||++|..|||.++.+.|+||+|..|+|||++|.+.+++.+...
T Consensus 16 s~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~----- 90 (980)
T KOG4284|consen 16 SIDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR----- 90 (980)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-----
Confidence 344456666789999999999999999999999999999999999999999999999999999998888766432
Q ss_pred CCCCccccceEEEEcCcHHHHHHHHHHHHHhhc-cCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccccc
Q 007280 216 PRGSRTVYPLALILAPTRELSSQIHVEAKKFSY-QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS 294 (609)
Q Consensus 216 ~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~-~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~ 294 (609)
...+.++||+||||||.||++.+.+++. ..+++|.+++||+........+.+ |+|+|+|||||..+++.+.++
T Consensus 91 -----~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n 164 (980)
T KOG4284|consen 91 -----SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMN 164 (980)
T ss_pred -----cCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCC
Confidence 3346799999999999999999999985 568999999999998887777654 899999999999999999999
Q ss_pred ccceEEEEeccchhhhh-cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCccccee
Q 007280 295 LQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIV 373 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~-~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~ 373 (609)
++.++++||||||.|++ ..|..+|..|++.+ |..+|++.||||.|..+..++..||.++.++.....+...-.|.
T Consensus 165 ~s~vrlfVLDEADkL~~t~sfq~~In~ii~sl----P~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~Gik 240 (980)
T KOG4284|consen 165 MSHVRLFVLDEADKLMDTESFQDDINIIINSL----PQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIK 240 (980)
T ss_pred ccceeEEEeccHHhhhchhhHHHHHHHHHHhc----chhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechh
Confidence 99999999999999998 55999999999999 88999999999999999999999999999998887777777888
Q ss_pred EEEEEEeccc--------hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHH
Q 007280 374 QRVEFVHESD--------KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 445 (609)
Q Consensus 374 q~~~~~~~~~--------k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~ 445 (609)
|.+..+.... |.+.|-.++.... -...||||+....|+-++.+|...|++|..|.|.|+|.+|..
T Consensus 241 Qyv~~~~s~nnsveemrlklq~L~~vf~~ip-------y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~ 313 (980)
T KOG4284|consen 241 QYVVAKCSPNNSVEEMRLKLQKLTHVFKSIP-------YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLL 313 (980)
T ss_pred heeeeccCCcchHHHHHHHHHHHHHHHhhCc-------hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHH
Confidence 8887765432 3344444443332 445799999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 446 ALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 446 ~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
+++.++.-.++|||+||..+||||-++|++|||.|+|.+.++|.||||||||.|..|.+++|+.....
T Consensus 314 a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 314 AVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred HHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999987544
No 35
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-53 Score=428.73 Aligned_cols=364 Identities=30% Similarity=0.434 Sum_probs=301.9
Q ss_pred CccccCCCCHHHHH----------HHHHCCCCCCCHHHHHHHhhHhC---------CCCceeeccCCCCchHHhHHHHHH
Q 007280 145 NTFAEIDLGEALNL----------NIRRCKYVKPTPVQRHAIPISIG---------GRDLMACAQTGSGKTAAFCFPIIS 205 (609)
Q Consensus 145 ~~f~~~~l~~~l~~----------~i~~~~~~~pt~iQ~~~i~~i~~---------~~d~ii~a~TGsGKT~a~llpil~ 205 (609)
..|+.+++++.+.. ++..+++....|+|..++|.++. .+|+.|.||||||||++|.|||++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 34566666655544 48899999999999999998852 589999999999999999999999
Q ss_pred HHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcC-----CCEEEeC
Q 007280 206 GIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERG-----VDILVAT 280 (609)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~-----~~IlV~T 280 (609)
.+..... ...+||||+||++|+.|+++++.+++..+++.|+.+.|..+...+.++|... .||||+|
T Consensus 207 ~L~~R~v---------~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaT 277 (620)
T KOG0350|consen 207 LLSSRPV---------KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVAT 277 (620)
T ss_pred HHccCCc---------cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcC
Confidence 8865432 1245999999999999999999999999999999999999999888888653 4899999
Q ss_pred hHHHHHHHHc-ccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCC------------------------------C
Q 007280 281 PGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMP------------------------------P 329 (609)
Q Consensus 281 pg~L~~~l~~-~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~------------------------------~ 329 (609)
||||+|+|.+ ..++|+.++|+|+||||||++..|...+..++..+..+ .
T Consensus 278 PGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~ 357 (620)
T KOG0350|consen 278 PGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKL 357 (620)
T ss_pred chHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCc
Confidence 9999999985 56899999999999999999988888777776655322 1
Q ss_pred CCCceEEEEEeeccHHHHHHHHHhhcCcEEEEec----ccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCc
Q 007280 330 PGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG----RVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQA 405 (609)
Q Consensus 330 ~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~----~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~ 405 (609)
.+..+.+.||||+...-..+...-+..|....+. ........+...+..++...|...++.++.... -.
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k-------~~ 430 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNK-------LN 430 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhh-------cc
Confidence 2234678899999777677776666666333332 233444556666666677778888888887653 66
Q ss_pred eEEEEecchhhHHHHHHHHH----hCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCC
Q 007280 406 LTLVFVETKKGADALEHWLY----MNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDL 481 (609)
Q Consensus 406 k~lVF~~t~~~~~~l~~~L~----~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~ 481 (609)
++|+|+++...+..++..|. ...+.+..+.|.+++..|.+.++.|..|.++||||+|+++||||+.+|+.|||||+
T Consensus 431 r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~ 510 (620)
T KOG0350|consen 431 RTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDP 510 (620)
T ss_pred eEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCC
Confidence 79999999999999999886 33566777999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHH
Q 007280 482 PNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQ 524 (609)
Q Consensus 482 p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~ 524 (609)
|.+...|+||+|||+|+|+.|.|+.+.+..+......+.+...
T Consensus 511 P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 511 PASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred CchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhc
Confidence 9999999999999999999999999999988877666655544
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1e-52 Score=474.55 Aligned_cols=353 Identities=20% Similarity=0.262 Sum_probs=274.9
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEc
Q 007280 151 DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA 230 (609)
Q Consensus 151 ~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~ 230 (609)
.|++.+.+.|++++|++||++|.++|+.+++++|+++++|||||||+||++|+++.+.+.. .+++|||+
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-----------~~~aL~l~ 88 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP-----------RATALYLA 88 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-----------CcEEEEEc
Confidence 4889999999999999999999999999999999999999999999999999999987532 24599999
Q ss_pred CcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHc----ccccccceEEEEeccc
Q 007280 231 PTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER----ARVSLQMIRYLALDEA 306 (609)
Q Consensus 231 Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~----~~~~l~~i~~lVlDEa 306 (609)
|||+||.|+..+++++. ..++++.++.|+.+. ++...+...++|+|+||++|...+.. ....++++++||||||
T Consensus 89 PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 89 PTKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred ChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 99999999999999987 457888887777764 44456677799999999999754322 1234789999999999
Q ss_pred hhhhhcCCHHHHHHHHHHcCC---CCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEec--
Q 007280 307 DRMLDMGFEPQIRKIVQQMDM---PPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE-- 381 (609)
Q Consensus 307 h~~l~~gf~~~i~~i~~~l~~---~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~-- 381 (609)
|+|.+. |...+..++..+.. .....+|+++||||+++..+ +++.++..++.+ +........... ...+.+.
T Consensus 167 h~~~g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~~-~~~~~p~~~ 242 (742)
T TIGR03817 167 HSYRGV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGART-VALWEPPLT 242 (742)
T ss_pred hhccCc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCceE-EEEecCCcc
Confidence 999774 77777666655421 11456899999999988754 677777766544 332222222111 1111111
Q ss_pred -----------cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC--------CCCcEEecCccCHHH
Q 007280 382 -----------SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--------GFPATTIHGDRTQQE 442 (609)
Q Consensus 382 -----------~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~--------~~~~~~ihg~~~~~~ 442 (609)
........+++...... ..++||||+|++.++.++..|... +..+..+||++++++
T Consensus 243 ~~~~~~~~~~r~~~~~~~~~~l~~l~~~-----~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~e 317 (742)
T TIGR03817 243 ELTGENGAPVRRSASAEAADLLADLVAE-----GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPED 317 (742)
T ss_pred ccccccccccccchHHHHHHHHHHHHHC-----CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHH
Confidence 00111223333333322 567999999999999999988753 567889999999999
Q ss_pred HHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcC--CChhhHHHHH
Q 007280 443 RELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE--NNMSLARPLT 520 (609)
Q Consensus 443 R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~--~~~~~~~~l~ 520 (609)
|.+++++|++|+++|||||+++++||||++|++||+|++|.++++|+||+|||||.|+.|.++++..+ .|..++..+.
T Consensus 318 R~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~ 397 (742)
T TIGR03817 318 RRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPE 397 (742)
T ss_pred HHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999864 3444455555
Q ss_pred HHHHH
Q 007280 521 ELMQE 525 (609)
Q Consensus 521 ~~l~~ 525 (609)
++++.
T Consensus 398 ~~~~~ 402 (742)
T TIGR03817 398 ALFDR 402 (742)
T ss_pred HHhcC
Confidence 55443
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4e-49 Score=441.90 Aligned_cols=337 Identities=18% Similarity=0.287 Sum_probs=260.0
Q ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEE
Q 007280 151 DLGEALNLNIR-RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALIL 229 (609)
Q Consensus 151 ~l~~~l~~~i~-~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil 229 (609)
...+.|...++ .+||..++|+|+++|+.++.++|+|+++|||+|||++|++|++.. . ..+|||
T Consensus 443 pw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---~-------------GiTLVI 506 (1195)
T PLN03137 443 PWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---P-------------GITLVI 506 (1195)
T ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---C-------------CcEEEE
Confidence 34455554444 479999999999999999999999999999999999999999842 1 249999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh------cCCCEEEeChHHHHH--HHHccc---ccccce
Q 007280 230 APTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE------RGVDILVATPGRLVD--LLERAR---VSLQMI 298 (609)
Q Consensus 230 ~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~------~~~~IlV~Tpg~L~~--~l~~~~---~~l~~i 298 (609)
+|+++|+.++...+.. .++++..+.++....++...+. ..++|||+||++|.. .+.+.. .....+
T Consensus 507 SPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~L 582 (1195)
T PLN03137 507 SPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLL 582 (1195)
T ss_pred eCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccc
Confidence 9999999865555544 3789999999988777655443 358999999999862 222111 123458
Q ss_pred EEEEeccchhhhhcC--CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhc--CcEEEEecccCCcccceeE
Q 007280 299 RYLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA--NYIFLAVGRVGSSTDLIVQ 374 (609)
Q Consensus 299 ~~lVlDEah~~l~~g--f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~--~~~~~~~~~~~~~~~~i~q 374 (609)
.+|||||||++++|| |++.++.+-..... .+..++++||||++..+++.+...+. +++.+. .....+++
T Consensus 583 slIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~--fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr---~Sf~RpNL-- 655 (1195)
T PLN03137 583 ARFVIDEAHCVSQWGHDFRPDYQGLGILKQK--FPNIPVLALTATATASVKEDVVQALGLVNCVVFR---QSFNRPNL-- 655 (1195)
T ss_pred ceeccCcchhhhhcccchHHHHHHHHHHHHh--CCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee---cccCccce--
Confidence 999999999999998 88888775322221 23578999999999988876555543 222221 11222333
Q ss_pred EEEEEeccch-HHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcC
Q 007280 375 RVEFVHESDK-RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSG 453 (609)
Q Consensus 375 ~~~~~~~~~k-~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g 453 (609)
.+.++....+ ...+..++... ......||||.+++.|+.+++.|...++.+..||++|++.+|+.++++|..|
T Consensus 656 ~y~Vv~k~kk~le~L~~~I~~~------~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G 729 (1195)
T PLN03137 656 WYSVVPKTKKCLEDIDKFIKEN------HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD 729 (1195)
T ss_pred EEEEeccchhHHHHHHHHHHhc------ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC
Confidence 2333333322 23333333321 1245689999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHH
Q 007280 454 KTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLT 520 (609)
Q Consensus 454 ~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~ 520 (609)
+++|||||+++++|||+|+|++||||++|.+++.|+||+|||||.|+++.|++||+..|...++.++
T Consensus 730 ei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 730 EINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred CCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987776666554
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8e-49 Score=425.94 Aligned_cols=328 Identities=20% Similarity=0.295 Sum_probs=255.6
Q ss_pred HHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHH
Q 007280 161 RRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (609)
Q Consensus 161 ~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~ 240 (609)
+.++|..|+|+|+++|+.+++++|+++++|||+|||++|++|++.. . ..+|||+||++|+.|+.
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---~-------------~~~lVi~P~~~L~~dq~ 68 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---D-------------GITLVISPLISLMEDQV 68 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---C-------------CcEEEEecHHHHHHHHH
Confidence 3579999999999999999999999999999999999999998742 1 23899999999999998
Q ss_pred HHHHHhhccCCeEEEEEECCcChHHHHH---HHh-cCCCEEEeChHHHHHHHH-cccc-cccceEEEEeccchhhhhcC-
Q 007280 241 VEAKKFSYQTGVKVVVAYGGAPINQQLR---ELE-RGVDILVATPGRLVDLLE-RARV-SLQMIRYLALDEADRMLDMG- 313 (609)
Q Consensus 241 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~-~~~~IlV~Tpg~L~~~l~-~~~~-~l~~i~~lVlDEah~~l~~g- 313 (609)
+.+..+ ++.+..+.++....++.. .+. ..++|+|+||++|..... ...+ .+..+++|||||||++++|+
T Consensus 69 ~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~ 144 (470)
T TIGR00614 69 LQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGH 144 (470)
T ss_pred HHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCcccc
Confidence 888764 677877777766553332 222 248999999999754221 1111 46789999999999999987
Q ss_pred -CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhh--cCcEEEEecccCCcccceeEEEEEEecc-chHHHHH
Q 007280 314 -FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL--ANYIFLAVGRVGSSTDLIVQRVEFVHES-DKRSHLM 389 (609)
Q Consensus 314 -f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l--~~~~~~~~~~~~~~~~~i~q~~~~~~~~-~k~~~l~ 389 (609)
|.+.+..+...... .+..++++||||+++.+...+...+ .++..+... ...+++. +.+.... .....++
T Consensus 145 ~fr~~~~~l~~l~~~--~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~~r~nl~--~~v~~~~~~~~~~l~ 217 (470)
T TIGR00614 145 DFRPDYKALGSLKQK--FPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---FDRPNLY--YEVRRKTPKILEDLL 217 (470)
T ss_pred ccHHHHHHHHHHHHH--cCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---CCCCCcE--EEEEeCCccHHHHHH
Confidence 77877765433222 2356899999999998766555543 233333221 1122222 2222222 2334455
Q ss_pred HHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCC
Q 007280 390 DLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLD 469 (609)
Q Consensus 390 ~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlD 469 (609)
+++... .+...+||||++++.++.+++.|...++.+..+|++|++.+|+++++.|++|+++|||||+++++|||
T Consensus 218 ~~l~~~------~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID 291 (470)
T TIGR00614 218 RFIRKE------FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGIN 291 (470)
T ss_pred HHHHHh------cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCC
Confidence 554432 12455799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHH
Q 007280 470 IPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTE 521 (609)
Q Consensus 470 ip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~ 521 (609)
+|+|++||||++|.+++.|+||+|||||.|++|.|++|++..|...++.+..
T Consensus 292 ~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 292 KPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred cccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998877776654
No 39
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-50 Score=373.68 Aligned_cols=345 Identities=32% Similarity=0.500 Sum_probs=290.6
Q ss_pred ccCCCCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhccc
Q 007280 135 TSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQ 214 (609)
Q Consensus 135 ~~~~~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~ 214 (609)
..|..+.-..+-|.++-|.++|+++|-.+||++|..+|.+|||...-|.|++++|..|.|||++|.+.-|+++--..
T Consensus 32 ~kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~--- 108 (387)
T KOG0329|consen 32 KKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD--- 108 (387)
T ss_pred ccCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC---
Confidence 45555556667799999999999999999999999999999999999999999999999999999998887763221
Q ss_pred CCCCCccccceEEEEcCcHHHHHHHHHHHHHhhc-cCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccc
Q 007280 215 RPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY-QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV 293 (609)
Q Consensus 215 ~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~-~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~ 293 (609)
-...+||+|.|||||-||..+..+|++ -..+++.+.+||.++.+....+.+-++|+|+||||++.+..+..+
T Consensus 109 -------g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l 181 (387)
T KOG0329|consen 109 -------GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSL 181 (387)
T ss_pred -------CeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccC
Confidence 123499999999999999999999875 467999999999999999988988899999999999999999999
Q ss_pred cccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCC-cccce
Q 007280 294 SLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGS-STDLI 372 (609)
Q Consensus 294 ~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~-~~~~i 372 (609)
++++++++||||||.|++. -++++-++.+-...|...|+++||||+++++...++.|+.++..+.++.... ....+
T Consensus 182 ~lk~vkhFvlDEcdkmle~---lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGL 258 (387)
T KOG0329|consen 182 NLKNVKHFVLDECDKMLEQ---LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGL 258 (387)
T ss_pred chhhcceeehhhHHHHHHH---HHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhH
Confidence 9999999999999999863 3344444444333488899999999999999999999999998888865543 34567
Q ss_pred eEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhc
Q 007280 373 VQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS 452 (609)
Q Consensus 373 ~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~ 452 (609)
.|.|....+.+|...|.++|.... -..++||+.+.... . |
T Consensus 259 qQ~YvkLke~eKNrkl~dLLd~Le-------FNQVvIFvKsv~Rl------------------------------~-f-- 298 (387)
T KOG0329|consen 259 QQYYVKLKENEKNRKLNDLLDVLE-------FNQVVIFVKSVQRL------------------------------S-F-- 298 (387)
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhh-------hcceeEeeehhhhh------------------------------h-h--
Confidence 788888888888888888887664 45689999887651 0 2
Q ss_pred CCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcC-CChhhHHHHHHHHHHhcccch
Q 007280 453 GKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE-NNMSLARPLTELMQEANQEVP 531 (609)
Q Consensus 453 g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~-~~~~~~~~l~~~l~~~~q~vp 531 (609)
..+ ||||++..||+||..|+.|||||+|.+.++|.||++||||.|.+|.++.|+.. ++..++..+.+-..-...++|
T Consensus 299 -~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLp 376 (387)
T KOG0329|consen 299 -QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELP 376 (387)
T ss_pred -hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcC
Confidence 223 89999999999999999999999999999999999999999999999999985 556667777766666666777
Q ss_pred HHH
Q 007280 532 AWL 534 (609)
Q Consensus 532 ~~l 534 (609)
+.+
T Consensus 377 dei 379 (387)
T KOG0329|consen 377 DEI 379 (387)
T ss_pred ccc
Confidence 663
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.5e-47 Score=422.74 Aligned_cols=325 Identities=22% Similarity=0.315 Sum_probs=255.1
Q ss_pred HCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 162 ~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
.+||..|+|+|+++|+.+++++|+++++|||+|||++|++|++.. . ..+|||+|+++|+.|+.+
T Consensus 20 ~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~-------------g~tlVisPl~sL~~dqv~ 83 (607)
T PRK11057 20 TFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---D-------------GLTLVVSPLISLMKDQVD 83 (607)
T ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---C-------------CCEEEEecHHHHHHHHHH
Confidence 369999999999999999999999999999999999999999842 1 138999999999999988
Q ss_pred HHHHhhccCCeEEEEEECCcChHHHHHHH---h-cCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcC--CH
Q 007280 242 EAKKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG--FE 315 (609)
Q Consensus 242 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~g--f~ 315 (609)
.++.+ ++.+.++.++....+....+ . ...+|+|+||++|........+...++++|||||||++++++ |.
T Consensus 84 ~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr 159 (607)
T PRK11057 84 QLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFR 159 (607)
T ss_pred HHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCccc
Confidence 88774 67777777776655543322 2 247899999999874222222334578999999999999987 77
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhh--cCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHH
Q 007280 316 PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL--ANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLH 393 (609)
Q Consensus 316 ~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l--~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~ 393 (609)
+.+..+...... .+..++++||||++..+.......+ .++.... ... ..+++ .+.++....+...++..+.
T Consensus 160 ~~y~~L~~l~~~--~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~--~r~nl--~~~v~~~~~~~~~l~~~l~ 232 (607)
T PRK11057 160 PEYAALGQLRQR--FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSF--DRPNI--RYTLVEKFKPLDQLMRYVQ 232 (607)
T ss_pred HHHHHHHHHHHh--CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCC--CCCcc--eeeeeeccchHHHHHHHHH
Confidence 777665433221 2357899999999987765443333 3333322 111 12222 2333444444445555554
Q ss_pred HHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCc
Q 007280 394 AQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV 473 (609)
Q Consensus 394 ~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v 473 (609)
.. ...++||||++++.|+.+++.|...++.+..+|++|++.+|+++++.|+.|+.+|||||+++++|||+|+|
T Consensus 233 ~~-------~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V 305 (607)
T PRK11057 233 EQ-------RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNV 305 (607)
T ss_pred hc-------CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCc
Confidence 32 25679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHH
Q 007280 474 AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLT 520 (609)
Q Consensus 474 ~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~ 520 (609)
++|||||+|.+++.|+||+|||||.|.+|.|++||+..|...++.+.
T Consensus 306 ~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876665543
No 41
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.4e-47 Score=419.74 Aligned_cols=320 Identities=21% Similarity=0.207 Sum_probs=249.7
Q ss_pred CCCCCCCHHHHHHHhhHhCCC-CceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEE-EcCcHHHHHHHH
Q 007280 163 CKYVKPTPVQRHAIPISIGGR-DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI-LAPTRELSSQIH 240 (609)
Q Consensus 163 ~~~~~pt~iQ~~~i~~i~~~~-d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Li-l~Ptr~La~Qi~ 240 (609)
.||+ |||||+++|+.++.|+ ++++++|||||||.+|.++++.. ... ...|+.|| ++||||||.|++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~----------~~~~~rLv~~vPtReLa~Qi~ 79 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG----------AKVPRRLVYVVNRRTVVDQVT 79 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc----------ccccceEEEeCchHHHHHHHH
Confidence 4887 9999999999999998 57778999999999776555522 111 11234555 779999999999
Q ss_pred HHHHHhhccC-----------------------CeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccc----
Q 007280 241 VEAKKFSYQT-----------------------GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV---- 293 (609)
Q Consensus 241 ~~~~~~~~~~-----------------------~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~---- 293 (609)
++++++.+.. .+++.+++||.+...++..+..+++|||+|+ |++.+..+
T Consensus 80 ~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gY 155 (844)
T TIGR02621 80 EEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccc
Confidence 9999998754 4889999999999999999999999999994 55555443
Q ss_pred ------------cccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCC-CCCceEEEEEeeccHHHHHHHHHhhcCcEEE
Q 007280 294 ------------SLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPP-PGMRQTMLFSATFPKEIQRLASDFLANYIFL 360 (609)
Q Consensus 294 ------------~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~-~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~ 360 (609)
.++++++||||||| ++++|.+++..|+..+..+. ...+|+++||||++.++..++..++.++..+
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i 233 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKH 233 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCcee
Confidence 26889999999999 78999999999999753221 1237999999999999888888888777665
Q ss_pred EecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCH
Q 007280 361 AVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ 440 (609)
Q Consensus 361 ~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~ 440 (609)
.+.........+.+. ..+....|...++..+...... ...++||||+|++.|+.+++.|...++ ..|||+|++
T Consensus 234 ~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e----~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q 306 (844)
T TIGR02621 234 PVLKKRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKD----SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRG 306 (844)
T ss_pred ecccccccccceEEE-EecChHHHHHHHHHHHHHHHhh----CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCH
Confidence 554444444445543 2333344444444444333321 256799999999999999999998876 899999999
Q ss_pred HHHH-----HHHHhhhc----CC-------CcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCc-e
Q 007280 441 QERE-----LALRSFKS----GK-------TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG-L 503 (609)
Q Consensus 441 ~~R~-----~~~~~F~~----g~-------~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G-~ 503 (609)
.+|+ .++++|++ ++ ..|||||+++++||||+. ++||++..| ++.|+||+||++|.|+.+ .
T Consensus 307 ~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 307 AERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred HHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCc
Confidence 9999 88999987 44 679999999999999986 899998877 699999999999999854 4
Q ss_pred EEEEEcC
Q 007280 504 ATAFFNE 510 (609)
Q Consensus 504 ~~~f~~~ 510 (609)
++++++.
T Consensus 384 ~i~vv~~ 390 (844)
T TIGR02621 384 QIAVVHL 390 (844)
T ss_pred eEEEEee
Confidence 4666543
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.2e-46 Score=433.48 Aligned_cols=343 Identities=22% Similarity=0.308 Sum_probs=259.3
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcC
Q 007280 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (609)
Q Consensus 152 l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 231 (609)
|++.+.+.+.. +|..|||+|+++|+.+++++|++++||||||||++|++|+++.++...... .....+.+|||+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~----~~~~~~~~LyIsP 92 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREG----ELEDKVYCLYVSP 92 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcccc----CCCCCeEEEEEcC
Confidence 56677666665 799999999999999999999999999999999999999999987643211 1123467999999
Q ss_pred cHHHHHHHHHHHHH-------hh----ccC-CeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccc--cccc
Q 007280 232 TRELSSQIHVEAKK-------FS----YQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV--SLQM 297 (609)
Q Consensus 232 tr~La~Qi~~~~~~-------~~----~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~--~l~~ 297 (609)
|++|+.|+++.+.. ++ ... ++++.+.+|+.+..++.+.+.+.++|+|+||++|..++....+ .+++
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 99999999876542 22 222 6788999999988888777888899999999999888765433 5789
Q ss_pred eEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcC--------cEEEEecccCCcc
Q 007280 298 IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN--------YIFLAVGRVGSST 369 (609)
Q Consensus 298 i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~--------~~~~~~~~~~~~~ 369 (609)
+++|||||||.|++..+...+..++..+........|+|+||||+++ ...++. ++.. +..+. ... ..
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~-~L~~~~~~~~~r~~~iv-~~~--~~ 247 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAK-FLVGYEDDGEPRDCEIV-DAR--FV 247 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHH-HhcCccccCCCCceEEE-ccC--CC
Confidence 99999999999998877777766666554333456899999999965 233333 3321 11111 110 00
Q ss_pred cceeEEEE-------EEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC------CCCcEEecC
Q 007280 370 DLIVQRVE-------FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN------GFPATTIHG 436 (609)
Q Consensus 370 ~~i~q~~~-------~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~------~~~~~~ihg 436 (609)
..+...+. ..........+...|...... ..++||||+|++.|+.++..|... +..+..+||
T Consensus 248 k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~-----~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg 322 (876)
T PRK13767 248 KPFDIKVISPVDDLIHTPAEEISEALYETLHELIKE-----HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHS 322 (876)
T ss_pred ccceEEEeccCccccccccchhHHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeC
Confidence 11111110 011122234455555554432 457999999999999999999763 467899999
Q ss_pred ccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccC-CCCceEEEEEc
Q 007280 437 DRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA-GKSGLATAFFN 509 (609)
Q Consensus 437 ~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~-g~~G~~~~f~~ 509 (609)
+|++++|..+++.|++|+++|||||+++++|||||+|++||+|+.|.++.+|+||+||+||. |..+.++++..
T Consensus 323 ~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 323 SLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999986 44444555544
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6e-46 Score=414.86 Aligned_cols=325 Identities=20% Similarity=0.320 Sum_probs=261.7
Q ss_pred HCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 162 ~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
.+||..++|+|.++|+.+++++|+++++|||+|||++|++|++.. . ..+|||+|+++|+.|+.+
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---~-------------g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---K-------------GLTVVISPLISLMKDQVD 71 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---C-------------CcEEEEcCCHHHHHHHHH
Confidence 479999999999999999999999999999999999999998732 1 128999999999999988
Q ss_pred HHHHhhccCCeEEEEEECCcChHHHHHHH----hcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcC--CH
Q 007280 242 EAKKFSYQTGVKVVVAYGGAPINQQLREL----ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG--FE 315 (609)
Q Consensus 242 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~g--f~ 315 (609)
.++.+ ++.+..+.++.+..+....+ ...++|+|+||++|........+...++++|||||||++.+++ |+
T Consensus 72 ~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~fr 147 (591)
T TIGR01389 72 QLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFR 147 (591)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccH
Confidence 88774 67888888887765543322 2358999999999975443344456789999999999999877 88
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhc--CcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHH
Q 007280 316 PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA--NYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLH 393 (609)
Q Consensus 316 ~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~--~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~ 393 (609)
+.+..+....... +..++++||||++..+...+...+. ++..+. . ....+++ .+..+....+...+.+++.
T Consensus 148 p~y~~l~~l~~~~--~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~--~~~r~nl--~~~v~~~~~~~~~l~~~l~ 220 (591)
T TIGR01389 148 PEYQRLGSLAERF--PQVPRIALTATADAETRQDIRELLRLADANEFI-T--SFDRPNL--RFSVVKKNNKQKFLLDYLK 220 (591)
T ss_pred HHHHHHHHHHHhC--CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-c--CCCCCCc--EEEEEeCCCHHHHHHHHHH
Confidence 8887776544322 2345999999999888776665553 222221 1 1112222 2344455566666776665
Q ss_pred HHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCc
Q 007280 394 AQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV 473 (609)
Q Consensus 394 ~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v 473 (609)
... ..++||||++++.++.+++.|...++++..+|++|++++|+.+++.|..|+++|||||+++++|||+|+|
T Consensus 221 ~~~-------~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v 293 (591)
T TIGR01389 221 KHR-------GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNV 293 (591)
T ss_pred hcC-------CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCC
Confidence 432 5678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHH
Q 007280 474 AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLT 520 (609)
Q Consensus 474 ~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~ 520 (609)
++||+|++|.+++.|+|++|||||.|+++.|++||+..|...++.+.
T Consensus 294 ~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 294 RFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988876655544
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.6e-46 Score=424.02 Aligned_cols=340 Identities=23% Similarity=0.298 Sum_probs=262.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhh-HhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccc
Q 007280 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (609)
Q Consensus 146 ~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~-i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~ 224 (609)
.|++++|++.+.+.+...+|.+|+|+|.+|++. +++++|++++||||||||++|++|++..+... .
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~-------------~ 68 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG-------------G 68 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC-------------C
Confidence 478899999999999999999999999999997 67899999999999999999999999888532 2
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEec
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlD 304 (609)
++|||+|+++||.|++++++++.. .++++..++|+...... ....++|+||||+++..++.+....++++++||+|
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViD 144 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVD 144 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEE
Confidence 399999999999999999998754 47899999998764432 22357999999999999888765568899999999
Q ss_pred cchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEE--------EEecccCCcccceeEEE
Q 007280 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIF--------LAVGRVGSSTDLIVQRV 376 (609)
Q Consensus 305 Eah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~--------~~~~~~~~~~~~i~q~~ 376 (609)
|+|.+.+.++.+.++.++..+... ....|+|+||||+++. .+++. |+....+ +................
T Consensus 145 E~H~l~d~~rg~~le~il~rl~~~-~~~~qii~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~ 221 (737)
T PRK02362 145 EVHLIDSANRGPTLEVTLAKLRRL-NPDLQVVALSATIGNA-DELAD-WLDAELVDSEWRPIDLREGVFYGGAIHFDDSQ 221 (737)
T ss_pred CccccCCCcchHHHHHHHHHHHhc-CCCCcEEEEcccCCCH-HHHHH-HhCCCcccCCCCCCCCeeeEecCCeecccccc
Confidence 999999989999999888877543 3458999999999752 33443 3322111 10000000000000000
Q ss_pred EEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC-----------------------------
Q 007280 377 EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN----------------------------- 427 (609)
Q Consensus 377 ~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~----------------------------- 427 (609)
..+....+ ...+.++..... ...++||||++++.|+.++..|...
T Consensus 222 ~~~~~~~~-~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 295 (737)
T PRK02362 222 REVEVPSK-DDTLNLVLDTLE-----EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETS 295 (737)
T ss_pred ccCCCccc-hHHHHHHHHHHH-----cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCcccc
Confidence 00111111 223333333322 2567999999999999998887542
Q ss_pred -------CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEE----cC-----CCCCHHHHHHH
Q 007280 428 -------GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN----FD-----LPNDIDDYVHR 491 (609)
Q Consensus 428 -------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~----~d-----~p~s~~~y~Qr 491 (609)
...+..+|++|++.+|+.+++.|++|.++|||||+++++|+|+|.+++||+ || .|.++.+|+||
T Consensus 296 ~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm 375 (737)
T PRK02362 296 KDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQM 375 (737)
T ss_pred HHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHH
Confidence 135778999999999999999999999999999999999999999999997 77 58899999999
Q ss_pred hhhcccCCCC--ceEEEEEcCC
Q 007280 492 IGRTGRAGKS--GLATAFFNEN 511 (609)
Q Consensus 492 iGRagR~g~~--G~~~~f~~~~ 511 (609)
+|||||.|.. |.|+++....
T Consensus 376 ~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 376 AGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred hhcCCCCCCCCCceEEEEecCc
Confidence 9999999875 9999998654
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=9.6e-45 Score=412.86 Aligned_cols=340 Identities=21% Similarity=0.282 Sum_probs=262.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhh-HhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccc
Q 007280 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (609)
Q Consensus 146 ~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~-i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~ 224 (609)
+|+++++++.+.+.++..+|.+|+|+|.++|+. +++++|++++||||||||++|++|++..+...+ .
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~------------~ 69 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREG------------G 69 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcC------------C
Confidence 478889999999999999999999999999985 789999999999999999999999998876432 2
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEec
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlD 304 (609)
++|||+|+++|+.|+++.+++|. ..++++..++|+.....+ ....++|+|+||+++..++......++++++||+|
T Consensus 70 ~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 70 KAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred eEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEc
Confidence 49999999999999999998874 358899999998765432 23468999999999998887766668999999999
Q ss_pred cchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcc-cceeEEEEEEeccc
Q 007280 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSST-DLIVQRVEFVHESD 383 (609)
Q Consensus 305 Eah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~i~q~~~~~~~~~ 383 (609)
|+|.+.+.++...+..++..+ ....|+|+||||+++ ..+++. |+....+....+..... ..+.+.+.......
T Consensus 146 E~H~l~~~~rg~~le~il~~l----~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~ 219 (720)
T PRK00254 146 EIHLIGSYDRGATLEMILTHM----LGRAQILGLSATVGN-AEELAE-WLNAELVVSDWRPVKLRKGVFYQGFLFWEDGK 219 (720)
T ss_pred CcCccCCccchHHHHHHHHhc----CcCCcEEEEEccCCC-HHHHHH-HhCCccccCCCCCCcceeeEecCCeeeccCcc
Confidence 999999989999999999987 456899999999975 355554 44433211111110000 00111111111111
Q ss_pred --h-HHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC---------------------------------
Q 007280 384 --K-RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--------------------------------- 427 (609)
Q Consensus 384 --k-~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~--------------------------------- 427 (609)
+ ...+..++...... ..++||||+|++.|+.++..|...
T Consensus 220 ~~~~~~~~~~~~~~~i~~-----~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 294 (720)
T PRK00254 220 IERFPNSWESLVYDAVKK-----GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKAL 294 (720)
T ss_pred hhcchHHHHHHHHHHHHh-----CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 1 12223333333322 567999999999998877666321
Q ss_pred CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEE-------cCCCC-CHHHHHHHhhhcccCC
Q 007280 428 GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN-------FDLPN-DIDDYVHRIGRTGRAG 499 (609)
Q Consensus 428 ~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~-------~d~p~-s~~~y~QriGRagR~g 499 (609)
...+..+|++|++.+|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. .+.+|+||+|||||.|
T Consensus 295 ~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 295 RGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred hhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 235789999999999999999999999999999999999999999999993 55544 5789999999999965
Q ss_pred --CCceEEEEEcCCC
Q 007280 500 --KSGLATAFFNENN 512 (609)
Q Consensus 500 --~~G~~~~f~~~~~ 512 (609)
..|.|++|.+.++
T Consensus 375 ~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 375 YDEVGEAIIVATTEE 389 (720)
T ss_pred cCCCceEEEEecCcc
Confidence 5799999987654
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.8e-43 Score=400.10 Aligned_cols=322 Identities=18% Similarity=0.211 Sum_probs=248.5
Q ss_pred CCHHHHHHHH-HCCCCCCCHHHHHHHhhHhCC------CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccc
Q 007280 152 LGEALNLNIR-RCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (609)
Q Consensus 152 l~~~l~~~i~-~~~~~~pt~iQ~~~i~~i~~~------~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~ 224 (609)
.+..+.+.+. .++| +|||+|.+||+.++++ +|+++|++||||||.+|++|++..+... +
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-------------~ 501 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-------------K 501 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-------------C
Confidence 3444444444 4678 5999999999999874 7899999999999999999998877543 3
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHH---HHHhc-CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL---RELER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
+++||+||++||.|+++.++++....++++.+++++.+..++. ..+.. .++|||+||..| ...+.++++++
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~l 576 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGL 576 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCE
Confidence 4999999999999999999998888889999998887654443 33444 489999999432 23456889999
Q ss_pred EEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEe
Q 007280 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH 380 (609)
Q Consensus 301 lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~ 380 (609)
|||||+|++ ....+..+..+ +...|+++||||+.+....+....+.+...+...... ...+...+. .
T Consensus 577 lVIDEahrf-----gv~~~~~L~~~----~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~--~ 643 (926)
T TIGR00580 577 LIIDEEQRF-----GVKQKEKLKEL----RTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVM--E 643 (926)
T ss_pred EEeeccccc-----chhHHHHHHhc----CCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEE--e
Confidence 999999994 33445555555 4568999999998666555554444555554432221 112222221 1
Q ss_pred ccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC--CCCcEEecCccCHHHHHHHHHhhhcCCCcEE
Q 007280 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKTPIL 458 (609)
Q Consensus 381 ~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~IL 458 (609)
.. ...+.+.+..... +..+++|||++++.++.+++.|... ++++..+||+|++.+|++++++|++|+.+||
T Consensus 644 ~~--~~~i~~~i~~el~-----~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~IL 716 (926)
T TIGR00580 644 YD--PELVREAIRRELL-----RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVL 716 (926)
T ss_pred cC--HHHHHHHHHHHHH-----cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 11 1223333333332 2567999999999999999999874 7889999999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEcCCCC-CHHHHHHHhhhcccCCCCceEEEEEcCCC
Q 007280 459 VATDVAARGLDIPHVAHVVNFDLPN-DIDDYVHRIGRTGRAGKSGLATAFFNENN 512 (609)
Q Consensus 459 VaT~v~~~GlDip~v~~VI~~d~p~-s~~~y~QriGRagR~g~~G~~~~f~~~~~ 512 (609)
|||+++++|||||++++||+++.|. ...+|+||+||+||.|+.|.|++|+...+
T Consensus 717 VaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~ 771 (926)
T TIGR00580 717 VCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQK 771 (926)
T ss_pred EECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcc
Confidence 9999999999999999999999975 68899999999999999999999997654
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.4e-42 Score=388.87 Aligned_cols=333 Identities=19% Similarity=0.271 Sum_probs=247.5
Q ss_pred HHHHHHCCCCCCCHHHHHHHhhHhCC------CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEc
Q 007280 157 NLNIRRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA 230 (609)
Q Consensus 157 ~~~i~~~~~~~pt~iQ~~~i~~i~~~------~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~ 230 (609)
...+..+.| +||++|+++|+.|.++ .++|++++||||||++|++|++..+... +++|||+
T Consensus 252 ~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g-------------~q~lila 317 (681)
T PRK10917 252 KKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG-------------YQAALMA 317 (681)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC-------------CeEEEEe
Confidence 334455667 6999999999999875 4799999999999999999999876432 3499999
Q ss_pred CcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHH---HHHHhc-CCCEEEeChHHHHHHHHcccccccceEEEEeccc
Q 007280 231 PTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQ---LRELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEA 306 (609)
Q Consensus 231 Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEa 306 (609)
||++||.|+++.++++....++++.+++|+.+..+. +..+.. .++|+|+||+.|.+ .+.+.++++||+||+
T Consensus 318 PT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~ 392 (681)
T PRK10917 318 PTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQ 392 (681)
T ss_pred ccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEech
Confidence 999999999999999998889999999999885443 344444 49999999988754 345788999999999
Q ss_pred hhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHH
Q 007280 307 DRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRS 386 (609)
Q Consensus 307 h~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~ 386 (609)
|++. ...+..+... ....++++||||+.+....+.. ..+.....+.........+... +....+..
T Consensus 393 Hrfg-----~~qr~~l~~~----~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~---~~~~~~~~ 458 (681)
T PRK10917 393 HRFG-----VEQRLALREK----GENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTV---VIPDSRRD 458 (681)
T ss_pred hhhh-----HHHHHHHHhc----CCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEE---EeCcccHH
Confidence 9953 2333333333 2347899999997654433332 2222222222221212223222 22233445
Q ss_pred HHHHHHHHHHhcCcCCCCceEEEEecchh--------hHHHHHHHHHhC--CCCcEEecCccCHHHHHHHHHhhhcCCCc
Q 007280 387 HLMDLLHAQVANGVHGKQALTLVFVETKK--------GADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKTP 456 (609)
Q Consensus 387 ~l~~~l~~~~~~~~~~~~~k~lVF~~t~~--------~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ 456 (609)
.+++.+...... ..+++|||+.++ .++.+++.|... ++++..+||+|++.+|++++++|++|+.+
T Consensus 459 ~~~~~i~~~~~~-----g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ 533 (681)
T PRK10917 459 EVYERIREEIAK-----GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEID 533 (681)
T ss_pred HHHHHHHHHHHc-----CCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 566666665532 667999999654 455667777665 47899999999999999999999999999
Q ss_pred EEEEccccccCCCCCCccEEEEcCCCC-CHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhc
Q 007280 457 ILVATDVAARGLDIPHVAHVVNFDLPN-DIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEAN 527 (609)
Q Consensus 457 ILVaT~v~~~GlDip~v~~VI~~d~p~-s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~ 527 (609)
|||||+++++|||+|++++||+++.|. ..+.|+||+||+||.|++|.|+++++...........+++.+..
T Consensus 534 ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~ 605 (681)
T PRK10917 534 ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETN 605 (681)
T ss_pred EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhc
Confidence 999999999999999999999999997 57889999999999999999999996443333444444554433
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.1e-42 Score=402.13 Aligned_cols=319 Identities=18% Similarity=0.187 Sum_probs=246.7
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHhhHhCC------CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEE
Q 007280 154 EALNLNIRRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227 (609)
Q Consensus 154 ~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~------~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~L 227 (609)
++..+....+.| .||++|.+||+.++++ +|+++|++||+|||.+|+.+++..+.. ++++|
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-------------g~qvl 653 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-------------HKQVA 653 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-------------CCeEE
Confidence 344455566777 7999999999999886 899999999999999999888765432 13499
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh----cCCCEEEeChHHHHHHHHcccccccceEEEEe
Q 007280 228 ILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 228 il~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
||+||++||.|+++.++++....++++.+++++.+..++...+. ..++|||+||+.| . ..+.++++++|||
T Consensus 654 vLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVI 728 (1147)
T PRK10689 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIV 728 (1147)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEE
Confidence 99999999999999999877767888888888888776655443 2589999999643 2 3456788999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccc
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~ 383 (609)
||+|++ ++. ....+..+ +..+|+++||||+.+.+..++...+.++..+...... ...+.+.+... .
T Consensus 729 DEahrf---G~~--~~e~lk~l----~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~---~ 794 (1147)
T PRK10689 729 DEEHRF---GVR--HKERIKAM----RADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREY---D 794 (1147)
T ss_pred echhhc---chh--HHHHHHhc----CCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEec---C
Confidence 999996 332 23444555 5678999999998887777777777777766543322 11222222221 1
Q ss_pred hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC--CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEc
Q 007280 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKTPILVAT 461 (609)
Q Consensus 384 k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT 461 (609)
.......++.... ...+++|||++++.++.+++.|... ++.+..+||+|++.+|++++++|++|+.+|||||
T Consensus 795 ~~~~k~~il~el~------r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT 868 (1147)
T PRK10689 795 SLVVREAILREIL------RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868 (1147)
T ss_pred cHHHHHHHHHHHh------cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 1111112222222 2567999999999999999999887 7889999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEcCCC-CCHHHHHHHhhhcccCCCCceEEEEEcCC
Q 007280 462 DVAARGLDIPHVAHVVNFDLP-NDIDDYVHRIGRTGRAGKSGLATAFFNEN 511 (609)
Q Consensus 462 ~v~~~GlDip~v~~VI~~d~p-~s~~~y~QriGRagR~g~~G~~~~f~~~~ 511 (609)
+++++|||||+|++||..+.. .+..+|+||+||+||.|+.|.|++++...
T Consensus 869 dIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 869 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred chhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 999999999999999955443 25678999999999999999999988654
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=7.8e-43 Score=395.53 Aligned_cols=339 Identities=17% Similarity=0.230 Sum_probs=255.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccce
Q 007280 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (609)
Q Consensus 146 ~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~ 225 (609)
.|++++|++.+.+.+...+|. |+|+|+++++.+.++++++++||||||||++++++++..+... .+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~-------------~k 67 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG-------------LK 67 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC-------------Cc
Confidence 477889999999999998886 9999999999999999999999999999999999998877542 23
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEecc
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 305 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDE 305 (609)
+|+|+|+++||.|++++++++. ..++++...+|+...... ..+.++|+|+||+++..++.+....+.++++||+||
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDE 143 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADE 143 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEec
Confidence 8999999999999999999864 457888888887654332 224689999999999998887766789999999999
Q ss_pred chhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCccccee-EEEEEEeccc-
Q 007280 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIV-QRVEFVHESD- 383 (609)
Q Consensus 306 ah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~-q~~~~~~~~~- 383 (609)
||++.+..+.+.++.++..+... ....|+|+||||+++ ..++++ |+....+....+.......+. .....++...
T Consensus 144 aH~l~d~~rg~~le~ll~~~~~~-~~~~riI~lSATl~n-~~~la~-wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~ 220 (674)
T PRK01172 144 IHIIGDEDRGPTLETVLSSARYV-NPDARILALSATVSN-ANELAQ-WLNASLIKSNFRPVPLKLGILYRKRLILDGYER 220 (674)
T ss_pred chhccCCCccHHHHHHHHHHHhc-CcCCcEEEEeCccCC-HHHHHH-HhCCCccCCCCCCCCeEEEEEecCeeeeccccc
Confidence 99999988888888887766433 346899999999975 345554 443222111000000000000 0000111111
Q ss_pred hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCC-------------------------CCcEEecCcc
Q 007280 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG-------------------------FPATTIHGDR 438 (609)
Q Consensus 384 k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~-------------------------~~~~~ihg~~ 438 (609)
....+..++..... ...++||||++++.|+.++..|.... ..+..+|++|
T Consensus 221 ~~~~~~~~i~~~~~-----~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl 295 (674)
T PRK01172 221 SQVDINSLIKETVN-----DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGL 295 (674)
T ss_pred ccccHHHHHHHHHh-----CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCC
Confidence 11123344444332 25679999999999999998886531 2467799999
Q ss_pred CHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCC---------CCCHHHHHHHhhhcccCCC--CceEEEE
Q 007280 439 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDL---------PNDIDDYVHRIGRTGRAGK--SGLATAF 507 (609)
Q Consensus 439 ~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~---------p~s~~~y~QriGRagR~g~--~G~~~~f 507 (609)
++++|+.+++.|++|.++|||||+++++|+|+|... ||++|. |.++.+|.||+|||||.|. .|.+++|
T Consensus 296 ~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 296 SNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIY 374 (674)
T ss_pred CHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEE
Confidence 999999999999999999999999999999999864 554443 4588999999999999985 6778888
Q ss_pred EcCC
Q 007280 508 FNEN 511 (609)
Q Consensus 508 ~~~~ 511 (609)
+...
T Consensus 375 ~~~~ 378 (674)
T PRK01172 375 AASP 378 (674)
T ss_pred ecCc
Confidence 6543
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.4e-41 Score=380.29 Aligned_cols=341 Identities=19% Similarity=0.268 Sum_probs=246.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHhhHhCC------CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEE
Q 007280 154 EALNLNIRRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227 (609)
Q Consensus 154 ~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~------~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~L 227 (609)
+.+.+.+..+.| +||++|+++|+.|+++ .+.+++++||||||++|++|++..+... ++++
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-------------~qvl 288 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-------------YQVA 288 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-------------CcEE
Confidence 445566677888 7999999999999865 3579999999999999999998876432 3499
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHH---HHHHhc-CCCEEEeChHHHHHHHHcccccccceEEEEe
Q 007280 228 ILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQ---LRELER-GVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 228 il~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
||+||++||.|+++.+++++...++++.+++|+....+. +..+.. .++|+|+||+.|.+ .+.+.++++||+
T Consensus 289 ilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVI 363 (630)
T TIGR00643 289 LMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVII 363 (630)
T ss_pred EECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEE
Confidence 999999999999999999998889999999999876553 333333 47999999998754 345788999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccc
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~ 383 (609)
||+|++.. .+...+...... ....++++||||+.+....+.. ..+.....+.........+... .+.. .
T Consensus 364 DEaH~fg~----~qr~~l~~~~~~--~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p~~r~~i~~~--~~~~-~ 432 (630)
T TIGR00643 364 DEQHRFGV----EQRKKLREKGQG--GFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELPPGRKPITTV--LIKH-D 432 (630)
T ss_pred echhhccH----HHHHHHHHhccc--CCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCCCCCCceEEE--EeCc-c
Confidence 99998532 122223332210 1246899999997554332221 1111111111111111122222 2222 2
Q ss_pred hHHHHHHHHHHHHhcCcCCCCceEEEEecch--------hhHHHHHHHHHh--CCCCcEEecCccCHHHHHHHHHhhhcC
Q 007280 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETK--------KGADALEHWLYM--NGFPATTIHGDRTQQERELALRSFKSG 453 (609)
Q Consensus 384 k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~--------~~~~~l~~~L~~--~~~~~~~ihg~~~~~~R~~~~~~F~~g 453 (609)
....+++.+...... ..+++|||+.. ..++.+++.|.. .++.+..+||+|++.+|++++++|++|
T Consensus 433 ~~~~~~~~i~~~l~~-----g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g 507 (630)
T TIGR00643 433 EKDIVYEFIEEEIAK-----GRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREG 507 (630)
T ss_pred hHHHHHHHHHHHHHh-----CCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 335566666655433 56799999876 345667777765 367899999999999999999999999
Q ss_pred CCcEEEEccccccCCCCCCccEEEEcCCCC-CHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhccc
Q 007280 454 KTPILVATDVAARGLDIPHVAHVVNFDLPN-DIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQE 529 (609)
Q Consensus 454 ~~~ILVaT~v~~~GlDip~v~~VI~~d~p~-s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~ 529 (609)
+.+|||||+++++|||+|++++||+++.|. ..+.|.||+||+||.|++|.|++++............+++.....-
T Consensus 508 ~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~dg 584 (630)
T TIGR00643 508 EVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLDG 584 (630)
T ss_pred CCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999987 6889999999999999999999999433333333334555544433
No 51
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.7e-42 Score=380.38 Aligned_cols=345 Identities=24% Similarity=0.310 Sum_probs=278.5
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEc
Q 007280 151 DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA 230 (609)
Q Consensus 151 ~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~ 230 (609)
-|++.+.+.+... |..|||.|.+|||.+.+|+|++++||||||||+|+.+|++..|.+... +....+..||+|+
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~-----~~~~~~i~~lYIs 80 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGK-----GKLEDGIYALYIS 80 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccC-----CCCCCceEEEEeC
Confidence 3788899998887 999999999999999999999999999999999999999999998741 1122345699999
Q ss_pred CcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccc--ccccceEEEEeccchh
Q 007280 231 PTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEADR 308 (609)
Q Consensus 231 Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~--~~l~~i~~lVlDEah~ 308 (609)
|.|+|...+...+..+....++.+.+.+|.++..+..+...+.+||||+||+.|.-+|.... -.|.++++||+||+|.
T Consensus 81 PLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 81 PLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh
Confidence 99999999999999999999999999999999888888889999999999999988876533 3689999999999999
Q ss_pred hhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCc-EEEEecccCCcccceeEEEEEEec-----c
Q 007280 309 MLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANY-IFLAVGRVGSSTDLIVQRVEFVHE-----S 382 (609)
Q Consensus 309 ~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~-~~~~~~~~~~~~~~i~q~~~~~~~-----~ 382 (609)
+.+.....++.--++.+....+ +.|.|.+|||..+ ..++++.+.... .+..+.........+ .+..... .
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k~~~i--~v~~p~~~~~~~~ 236 (814)
T COG1201 161 LAESKRGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAKKLEI--KVISPVEDLIYDE 236 (814)
T ss_pred hhccccchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCCcceE--EEEecCCcccccc
Confidence 9987777777777777765555 8899999999863 334444333332 222222111111111 1111111 1
Q ss_pred chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCC-CCcEEecCccCHHHHHHHHHhhhcCCCcEEEEc
Q 007280 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG-FPATTIHGDRTQQERELALRSFKSGKTPILVAT 461 (609)
Q Consensus 383 ~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~-~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT 461 (609)
.-...+++.+...... ...+|||+||+..++.++..|++.. .++..+||.++.++|..+.++|++|+.+++|||
T Consensus 237 ~~~~~~~~~i~~~v~~-----~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~T 311 (814)
T COG1201 237 ELWAALYERIAELVKK-----HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVAT 311 (814)
T ss_pred chhHHHHHHHHHHHhh-----cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEc
Confidence 2334456666555543 4469999999999999999999887 889999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEcCCCCCHHHHHHHhhhccc-CCCCceEEEEEcC
Q 007280 462 DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGR-AGKSGLATAFFNE 510 (609)
Q Consensus 462 ~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR-~g~~G~~~~f~~~ 510 (609)
..++-||||-+|+.||+|..|.++..++||+||+|+ .+...+.+++..+
T Consensus 312 SSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 312 SSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred cchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999999999995 5555666666554
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.9e-42 Score=401.22 Aligned_cols=310 Identities=22% Similarity=0.274 Sum_probs=224.9
Q ss_pred eeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhh------------ccCCeEE
Q 007280 187 ACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS------------YQTGVKV 254 (609)
Q Consensus 187 i~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~------------~~~~i~~ 254 (609)
|+||||||||++|++|+|..++...............+++|||+|+++|+.|+++.+++.. ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999999998653211000011234679999999999999999887522 1347899
Q ss_pred EEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc-cccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCc
Q 007280 255 VVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMR 333 (609)
Q Consensus 255 ~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~-~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~ 333 (609)
.+.+|+++..++.+.+.+.++|||+||++|..+|.+. ...++++++|||||+|.|++..+..++..++..+....+.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988887777888999999999999887653 346899999999999999976555555555554443335678
Q ss_pred eEEEEEeeccHHHHHHHHHhhc--CcEEEEecccCCcccceeEEEEEEeccch----------------HH----HHHHH
Q 007280 334 QTMLFSATFPKEIQRLASDFLA--NYIFLAVGRVGSSTDLIVQRVEFVHESDK----------------RS----HLMDL 391 (609)
Q Consensus 334 q~il~SAT~~~~~~~l~~~~l~--~~~~~~~~~~~~~~~~i~q~~~~~~~~~k----------------~~----~l~~~ 391 (609)
|+|+||||+++ .+++++ |+. .++.+.. ........+. .+..+.+..+ .. .+...
T Consensus 161 QrIgLSATI~n-~eevA~-~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAA-FLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCC-HHHHHH-HhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 99999999976 455554 443 2333322 1111111121 1111111000 00 11111
Q ss_pred HHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCC---------------------------------CCcEEecCcc
Q 007280 392 LHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG---------------------------------FPATTIHGDR 438 (609)
Q Consensus 392 l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~---------------------------------~~~~~ihg~~ 438 (609)
+...+. ...++||||||++.|+.++..|++.. +.+..+||+|
T Consensus 237 il~~i~-----~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsL 311 (1490)
T PRK09751 237 ILDEVL-----RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSV 311 (1490)
T ss_pred HHHHHh-----cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccC
Confidence 111111 25679999999999999999987531 1256789999
Q ss_pred CHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccC-CCCceEE
Q 007280 439 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA-GKSGLAT 505 (609)
Q Consensus 439 ~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~-g~~G~~~ 505 (609)
++++|..+++.|++|++++||||+++++||||++|++||+|+.|.++.+|+||+||+||. +..+.++
T Consensus 312 SkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 312 SKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred CHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 999999999999999999999999999999999999999999999999999999999996 3334445
No 53
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.4e-41 Score=394.08 Aligned_cols=302 Identities=23% Similarity=0.292 Sum_probs=240.9
Q ss_pred CCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 163 CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 163 ~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
.|+ +||++|++++|.++.++|++++||||+|||+ |+++++..+... ++++|||+||++|+.|+++.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~~------------g~~alIL~PTreLa~Qi~~~ 142 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAKK------------GKKSYIIFPTRLLVEQVVEK 142 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHhc------------CCeEEEEeccHHHHHHHHHH
Confidence 366 8999999999999999999999999999996 666665544321 24599999999999999999
Q ss_pred HHHhhccCCeEEEEEECCcC-----hHHHHHHHhc-CCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhh-----
Q 007280 243 AKKFSYQTGVKVVVAYGGAP-----INQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD----- 311 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~-----~~~~~~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~----- 311 (609)
+++++...++.+.+++++.. ..++...+.+ .++|+|+||++|.+++. .+....+++|||||||+|++
T Consensus 143 l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 143 LEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccch
Confidence 99999888888888877654 2333444454 58999999999999886 34566799999999999996
Q ss_pred ------cCCH-HHHHHHHHHcCCC--------------------CCCCceEEEEEeeccHH-HHHHHHHhhcCcEEEEec
Q 007280 312 ------MGFE-PQIRKIVQQMDMP--------------------PPGMRQTMLFSATFPKE-IQRLASDFLANYIFLAVG 363 (609)
Q Consensus 312 ------~gf~-~~i~~i~~~l~~~--------------------~~~~~q~il~SAT~~~~-~~~l~~~~l~~~~~~~~~ 363 (609)
+||. +++..++..+... .....|+++||||+++. +.. .++.+...+.++
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~ 297 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVG 297 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEec
Confidence 7885 6788888776320 01268999999999764 332 233455556666
Q ss_pred ccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhh---HHHHHHHHHhCCCCcEEecCccCH
Q 007280 364 RVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKG---ADALEHWLYMNGFPATTIHGDRTQ 440 (609)
Q Consensus 364 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~---~~~l~~~L~~~~~~~~~ihg~~~~ 440 (609)
.......++.+.+..+. .+...|.+++... ...+||||+++.. ++.++++|...++++..+||+|
T Consensus 298 ~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l--------~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-- 365 (1176)
T PRK09401 298 SPVFYLRNIVDSYIVDE--DSVEKLVELVKRL--------GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-- 365 (1176)
T ss_pred CcccccCCceEEEEEcc--cHHHHHHHHHHhc--------CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH--
Confidence 66666677877776554 5666777776533 3458999999888 9999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEEE----ccccccCCCCCC-ccEEEEcCCCC------CHHHHHHHhhhcccC
Q 007280 441 QERELALRSFKSGKTPILVA----TDVAARGLDIPH-VAHVVNFDLPN------DIDDYVHRIGRTGRA 498 (609)
Q Consensus 441 ~~R~~~~~~F~~g~~~ILVa----T~v~~~GlDip~-v~~VI~~d~p~------s~~~y~QriGRagR~ 498 (609)
++.+++|++|+++|||| |++++||||||+ |++|||||+|. ..+.|.||+||+...
T Consensus 366 ---~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 366 ---ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred ---HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 23469999999999999 699999999999 89999999998 678899999999743
No 54
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.6e-42 Score=377.23 Aligned_cols=314 Identities=18% Similarity=0.243 Sum_probs=231.4
Q ss_pred HHHHHHHhhHhCCCCceeeccCCCCchHH---------hHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHH
Q 007280 170 PVQRHAIPISIGGRDLMACAQTGSGKTAA---------FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (609)
Q Consensus 170 ~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a---------~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~ 240 (609)
.+|+++++.+++++++|++|+||||||++ |++|.+..+..-... ...+.++|++|||+||.|+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~-------~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPN-------FIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccc-------cCCcEEEEECcHHHHHHHHH
Confidence 47999999999999999999999999997 444444443211100 11235999999999999999
Q ss_pred HHHHHhhc---cCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHH
Q 007280 241 VEAKKFSY---QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQ 317 (609)
Q Consensus 241 ~~~~~~~~---~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~ 317 (609)
.++.+... ..++.+.+.+|+... .+.....+..+|+|+|++... ..++.+++|||||||++..++ +.
T Consensus 240 ~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~--Dl 309 (675)
T PHA02653 240 ITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG--DI 309 (675)
T ss_pred HHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch--hH
Confidence 98876542 245778888999873 222333346899999976311 247889999999999988765 45
Q ss_pred HHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEec---------cchHHHH
Q 007280 318 IRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE---------SDKRSHL 388 (609)
Q Consensus 318 i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~---------~~k~~~l 388 (609)
+..++..+. +..+|+++||||++.+++.+ ..++.++..+.+. +.....+.+.+..... ......+
T Consensus 310 lL~llk~~~---~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~--grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~ 383 (675)
T PHA02653 310 IIAVARKHI---DKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIP--GGTLFPISEVYVKNKYNPKNKRAYIEEEKKNI 383 (675)
T ss_pred HHHHHHHhh---hhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeC--CCcCCCeEEEEeecCcccccchhhhHHHHHHH
Confidence 555554431 23369999999999888877 5788887777664 2222334444332110 0111122
Q ss_pred HHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC--CCCcEEecCccCHHHHHHHHHhh-hcCCCcEEEEccccc
Q 007280 389 MDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSF-KSGKTPILVATDVAA 465 (609)
Q Consensus 389 ~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F-~~g~~~ILVaT~v~~ 465 (609)
+..+.... ......+|||++++++++.+++.|... ++.+..+||+|++. ++++++| ++|+.+|||||++|+
T Consensus 384 l~~L~~~~----~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAE 457 (675)
T PHA02653 384 VTALKKYT----PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLE 457 (675)
T ss_pred HHHHHHhh----cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhh
Confidence 33332221 112457999999999999999999877 68999999999975 5677777 789999999999999
Q ss_pred cCCCCCCccEEEEcC---CCC---------CHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 466 RGLDIPHVAHVVNFD---LPN---------DIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 466 ~GlDip~v~~VI~~d---~p~---------s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
||||||+|++||+++ .|. |.++|+||+|||||. ++|.|+.|+++++.
T Consensus 458 RGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 458 SSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred ccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 999999999999999 565 889999999999999 89999999998764
No 55
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-42 Score=342.43 Aligned_cols=286 Identities=32% Similarity=0.512 Sum_probs=232.4
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhc---cCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEE
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSY---QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~---~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
|.+||+-|.|||++|.+..+++|.. ...++..+++||.-.+.|...+..+.+|+|+||+||.+.+....+.+..+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 7889999999999999997666644 4456777899999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhhcCCHHHHHHHHHHcCCCCC--CCceEEEEEeecc-HHHHHHHHHhhcCcEEEEecccCCcccceeEEEE
Q 007280 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPP--GMRQTMLFSATFP-KEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVE 377 (609)
Q Consensus 301 lVlDEah~~l~~gf~~~i~~i~~~l~~~~~--~~~q~il~SAT~~-~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~ 377 (609)
+|+||||.+|..++.+.|.++..++..... ...|.+++|||+. -++..+.+..|.-++.+.+...+...+.++..+.
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 999999999999999999999888754332 3579999999985 3566667777777777766666665555555444
Q ss_pred EEeccc------------------------------hHHHHHHHHHHHHh--cCcCCCCceEEEEecchhhHHHHHHHHH
Q 007280 378 FVHESD------------------------------KRSHLMDLLHAQVA--NGVHGKQALTLVFVETKKGADALEHWLY 425 (609)
Q Consensus 378 ~~~~~~------------------------------k~~~l~~~l~~~~~--~~~~~~~~k~lVF~~t~~~~~~l~~~L~ 425 (609)
.+...- ....-..+|+-... ......-.+.||||.|+..|+.|..+|.
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 432110 01111112111000 0001235679999999999999999998
Q ss_pred hCC---CCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCc
Q 007280 426 MNG---FPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 502 (609)
Q Consensus 426 ~~~---~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G 502 (609)
+.+ +.|+.+|+++.+.+|.+-++.|+....++||||||++|||||..+-++||..+|.+..+|+|||||+||+.+-|
T Consensus 527 qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermg 606 (725)
T KOG0349|consen 527 QKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMG 606 (725)
T ss_pred HcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcc
Confidence 874 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEc
Q 007280 503 LATAFFN 509 (609)
Q Consensus 503 ~~~~f~~ 509 (609)
.+|.++.
T Consensus 607 laislva 613 (725)
T KOG0349|consen 607 LAISLVA 613 (725)
T ss_pred eeEEEee
Confidence 9999873
No 56
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.4e-41 Score=358.47 Aligned_cols=330 Identities=22% Similarity=0.361 Sum_probs=262.6
Q ss_pred HCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 162 ~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
-+||..++|-|.++|..+++++|+|+..|||.||+++|.+|++-. .+ .+|||+|..+|...+.+
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~G-------------~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---EG-------------LTLVVSPLISLMKDQVD 75 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---CC-------------CEEEECchHHHHHHHHH
Confidence 358999999999999999999999999999999999999999743 21 28999999999999888
Q ss_pred HHHHhhccCCeEEEEEECCcChHHHHHH---Hhc-CCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcC--CH
Q 007280 242 EAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG--FE 315 (609)
Q Consensus 242 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~g--f~ 315 (609)
.++.. ++.+..+.+..+..+.... +.. ..+||+.+|++|..--....+.-..+.++||||||++.+|| |+
T Consensus 76 ~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 76 QLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 88874 7888888887765554333 333 37999999999865332222335568899999999999998 99
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhc--CcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHH
Q 007280 316 PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA--NYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLH 393 (609)
Q Consensus 316 ~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~--~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~ 393 (609)
+++..+.......+ +..++++|||.++.++..+...|. .+..+. .....+++...+ +....-...+. .+.
T Consensus 152 P~Y~~lg~l~~~~~--~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~---~sfdRpNi~~~v--~~~~~~~~q~~-fi~ 223 (590)
T COG0514 152 PDYRRLGRLRAGLP--NPPVLALTATATPRVRDDIREQLGLQDANIFR---GSFDRPNLALKV--VEKGEPSDQLA-FLA 223 (590)
T ss_pred HhHHHHHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHhcCCCcceEE---ecCCCchhhhhh--hhcccHHHHHH-HHH
Confidence 99999887765433 678999999999988777666553 322221 122233333222 22111122222 332
Q ss_pred HHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCc
Q 007280 394 AQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV 473 (609)
Q Consensus 394 ~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v 473 (609)
.. .+......||||.|++.++.++++|...++.+..+|++|+.++|+.+.+.|..++.+|+|||.++++|||.|+|
T Consensus 224 ~~----~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdV 299 (590)
T COG0514 224 TV----LPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDV 299 (590)
T ss_pred hh----ccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCc
Confidence 21 12235668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHH
Q 007280 474 AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELM 523 (609)
Q Consensus 474 ~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l 523 (609)
.+|||||+|.+++.|+|-+|||||.|.+..|++||.+.|....+.+.+..
T Consensus 300 RfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 300 RFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred eEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988777766553
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.5e-40 Score=375.38 Aligned_cols=308 Identities=18% Similarity=0.215 Sum_probs=230.7
Q ss_pred HHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH-hhcc
Q 007280 171 VQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK-FSYQ 249 (609)
Q Consensus 171 iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~-~~~~ 249 (609)
+-.+.+..+.+++++|++|+||||||++|.++++..... .+++||++|||++|.|+++.+.+ +...
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-------------~~~ilvlqPrR~aA~qiA~rva~~~~~~ 72 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-------------GGKIIMLEPRRLAARSAAQRLASQLGEA 72 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-------------CCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 344566677788999999999999999999999876521 12499999999999999988754 4444
Q ss_pred CCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccch-hhhhcCCHHHH-HHHHHHcCC
Q 007280 250 TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEAD-RMLDMGFEPQI-RKIVQQMDM 327 (609)
Q Consensus 250 ~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah-~~l~~gf~~~i-~~i~~~l~~ 327 (609)
.+..+...+.+.. .....++|+|+||++|++++... ..++.+++|||||+| ++++.+|...+ ..+...+
T Consensus 73 ~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~l-- 143 (819)
T TIGR01970 73 VGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSL-- 143 (819)
T ss_pred cCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhc--
Confidence 4555554444432 22345799999999999998874 469999999999999 68887765443 3444445
Q ss_pred CCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHH-HHHHHHHHHHhcCcCCCCce
Q 007280 328 PPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRS-HLMDLLHAQVANGVHGKQAL 406 (609)
Q Consensus 328 ~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~-~l~~~l~~~~~~~~~~~~~k 406 (609)
+.+.|+|+||||++.+. ...|+.+...+.+... . ..+.+.|..+....+.. .+...+...... ..+.
T Consensus 144 --r~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr--~-~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~----~~g~ 211 (819)
T TIGR01970 144 --REDLKILAMSATLDGER---LSSLLPDAPVVESEGR--S-FPVEIRYLPLRGDQRLEDAVSRAVEHALAS----ETGS 211 (819)
T ss_pred --CCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc--c-eeeeeEEeecchhhhHHHHHHHHHHHHHHh----cCCc
Confidence 45689999999998753 3556655443433211 1 12333343333222221 222233332221 2567
Q ss_pred EEEEecchhhHHHHHHHHHh---CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCC
Q 007280 407 TLVFVETKKGADALEHWLYM---NGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPN 483 (609)
Q Consensus 407 ~lVF~~t~~~~~~l~~~L~~---~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~ 483 (609)
+|||++++++++.+++.|.. .++.+..+||+|++.+|.++++.|++|+.+||||||++++|||||+|++||++++|.
T Consensus 212 iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r 291 (819)
T TIGR01970 212 ILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLAR 291 (819)
T ss_pred EEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccc
Confidence 99999999999999999987 478899999999999999999999999999999999999999999999999999875
Q ss_pred ------------------CHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 484 ------------------DIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 484 ------------------s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
|.++|+||+|||||. ++|.||.||++.+.
T Consensus 292 ~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 292 VARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred ccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 345699999999999 89999999986543
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.1e-40 Score=393.38 Aligned_cols=326 Identities=20% Similarity=0.239 Sum_probs=248.8
Q ss_pred HHHHHHHH-CCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcH
Q 007280 155 ALNLNIRR-CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (609)
Q Consensus 155 ~l~~~i~~-~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 233 (609)
++.+.+++ +|| +|+++|+++|+.+++++|++++||||+|||++++++++..... ++++|||+||+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~-------------g~~aLVl~PTr 132 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALK-------------GKKCYIILPTT 132 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhc-------------CCeEEEEECHH
Confidence 34445555 799 6999999999999999999999999999999655554432211 13599999999
Q ss_pred HHHHHHHHHHHHhhccC--CeEEEEEECCcChHHHHH---HHhc-CCCEEEeChHHHHHHHHcccccccceEEEEeccch
Q 007280 234 ELSSQIHVEAKKFSYQT--GVKVVVAYGGAPINQQLR---ELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEAD 307 (609)
Q Consensus 234 ~La~Qi~~~~~~~~~~~--~i~~~~~~gg~~~~~~~~---~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah 307 (609)
+|+.|+++.++.++... ++++..++|+.+..++.. .+.. .++|||+||++|.+++... ....+++|||||||
T Consensus 133 eLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD 210 (1638)
T PRK14701 133 LLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVD 210 (1638)
T ss_pred HHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECce
Confidence 99999999999998764 467788889988776643 3444 4899999999998876642 12678999999999
Q ss_pred hhhh-----------cCCHHHHHH----HHHHcC------------------CCCCCCce-EEEEEeeccHHHHHHHHHh
Q 007280 308 RMLD-----------MGFEPQIRK----IVQQMD------------------MPPPGMRQ-TMLFSATFPKEIQRLASDF 353 (609)
Q Consensus 308 ~~l~-----------~gf~~~i~~----i~~~l~------------------~~~~~~~q-~il~SAT~~~~~~~l~~~~ 353 (609)
+|++ +||.+++.. |+.... ...+..+| ++++|||++.... ...+
T Consensus 211 ~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l 288 (1638)
T PRK14701 211 AFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKL 288 (1638)
T ss_pred eccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHH
Confidence 9986 689988875 432100 01133445 6789999985311 1133
Q ss_pred hcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhh---HHHHHHHHHhCCCC
Q 007280 354 LANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKG---ADALEHWLYMNGFP 430 (609)
Q Consensus 354 l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~---~~~l~~~L~~~~~~ 430 (609)
+.++..+.++.......++.+.+..+....+ ..|++++... ...+||||++++. |+.++++|...+++
T Consensus 289 ~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--------g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~ 359 (1638)
T PRK14701 289 YRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL--------GKGGLIFVPIDEGAEKAEEIEKYLLEDGFK 359 (1638)
T ss_pred hhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--------CCCeEEEEeccccchHHHHHHHHHHHCCCe
Confidence 4566667777666666778887766554444 4566666432 2458999999886 58999999999999
Q ss_pred cEEecCccCHHHHHHHHHhhhcCCCcEEEEc----cccccCCCCCC-ccEEEEcCCCC---CHHHHHHHh----------
Q 007280 431 ATTIHGDRTQQERELALRSFKSGKTPILVAT----DVAARGLDIPH-VAHVVNFDLPN---DIDDYVHRI---------- 492 (609)
Q Consensus 431 ~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT----~v~~~GlDip~-v~~VI~~d~p~---s~~~y~Qri---------- 492 (609)
+..+|++ |..++++|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|..
T Consensus 360 a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~ 434 (1638)
T PRK14701 360 IELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEI 434 (1638)
T ss_pred EEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHH
Confidence 9999994 8899999999999999999 59999999999 99999999999 888777665
Q ss_pred ---hhcccCCCCceEEEEEcCCC
Q 007280 493 ---GRTGRAGKSGLATAFFNENN 512 (609)
Q Consensus 493 ---GRagR~g~~G~~~~f~~~~~ 512 (609)
||++|.|.+..++..+...+
T Consensus 435 ~~~~~a~~~g~~~~~~~~~~~~~ 457 (1638)
T PRK14701 435 LKIEEELKEGIPIEGVLDVFPED 457 (1638)
T ss_pred HHhhhhcccCCcchhHHHhHHHH
Confidence 99999998877774433333
No 59
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.8e-39 Score=352.83 Aligned_cols=322 Identities=21% Similarity=0.203 Sum_probs=248.9
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
..|+|+|..+++.++.|+ |+.++||+|||++|++|++...+.. +.++||+||++||.|.++++.+
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G-------------~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAG-------------LPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcC-------------CeEEEEcCcHHHHHHHHHHHHH
Confidence 379999999999999998 9999999999999999999876543 3499999999999999999999
Q ss_pred hhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHccc-------------------------ccccceE
Q 007280 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR-------------------------VSLQMIR 299 (609)
Q Consensus 246 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~~-------------------------~~l~~i~ 299 (609)
+....++++.+++|+.+. +.+....+|||+|+|...| .|.|.... .....+.
T Consensus 167 l~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~ 244 (656)
T PRK12898 167 LYEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLH 244 (656)
T ss_pred HHhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccc
Confidence 999999999999999764 4555567899999999877 45553321 1235578
Q ss_pred EEEeccchhhh-hcC-----------------CHHHHHHHHHHcCCC---------------------------------
Q 007280 300 YLALDEADRML-DMG-----------------FEPQIRKIVQQMDMP--------------------------------- 328 (609)
Q Consensus 300 ~lVlDEah~~l-~~g-----------------f~~~i~~i~~~l~~~--------------------------------- 328 (609)
+.|+||+|.+| |.. +...+..++..+...
T Consensus 245 ~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~ 324 (656)
T PRK12898 245 FAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAW 324 (656)
T ss_pred eeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhc
Confidence 99999999754 210 001111111111000
Q ss_pred ----------------------------------------------------------------CCC-------------
Q 007280 329 ----------------------------------------------------------------PPG------------- 331 (609)
Q Consensus 329 ----------------------------------------------------------------~~~------------- 331 (609)
...
T Consensus 325 ~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~ 404 (656)
T PRK12898 325 RGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRF 404 (656)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHH
Confidence 000
Q ss_pred ---CceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEE
Q 007280 332 ---MRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTL 408 (609)
Q Consensus 332 ---~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~l 408 (609)
-.++..||||.+.+..++.+.|..+++.+...... .....+.+.+++...|...|.+++..... ...++|
T Consensus 405 Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~-----~~~pvL 477 (656)
T PRK12898 405 FRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHA-----QGRPVL 477 (656)
T ss_pred HHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHh-----cCCCEE
Confidence 01467799999988888888887776665443322 22244445667777888888888876432 245699
Q ss_pred EEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCC---Ccc-----EEEEcC
Q 007280 409 VFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIP---HVA-----HVVNFD 480 (609)
Q Consensus 409 VF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip---~v~-----~VI~~d 480 (609)
|||+|++.++.+++.|...++++..||+++. +|+..+..|+.++..|+||||+++||+||+ +|. |||+||
T Consensus 478 Ift~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d 555 (656)
T PRK12898 478 VGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTE 555 (656)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcC
Confidence 9999999999999999999999999999855 555556666666667999999999999999 676 999999
Q ss_pred CCCCHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 481 LPNDIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 481 ~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
+|.+...|+||+|||||.|++|.+++|++.+|.
T Consensus 556 ~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 556 RHDSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred CCCCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 999999999999999999999999999997664
No 60
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9.8e-40 Score=369.59 Aligned_cols=306 Identities=16% Similarity=0.222 Sum_probs=228.8
Q ss_pred HHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH-hhccC
Q 007280 172 QRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK-FSYQT 250 (609)
Q Consensus 172 Q~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~-~~~~~ 250 (609)
-.+.+..+.++++++++|+||||||++|.+++++..... .++||++|||++|.|+++.+.+ +....
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~-------------~~ilvlqPrR~aA~qia~rva~~l~~~~ 76 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGIN-------------GKIIMLEPRRLAARNVAQRLAEQLGEKP 76 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcC-------------CeEEEECChHHHHHHHHHHHHHHhCccc
Confidence 345566777889999999999999999999888643211 2499999999999999998754 44555
Q ss_pred CeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchh-hhhcCCHH-HHHHHHHHcCCC
Q 007280 251 GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-MLDMGFEP-QIRKIVQQMDMP 328 (609)
Q Consensus 251 ~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~-~l~~gf~~-~i~~i~~~l~~~ 328 (609)
+..+...+++... ..+..+|+|+|||+|++++... ..++.+++|||||+|. +++..+.- .+..++..+
T Consensus 77 g~~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~l--- 146 (812)
T PRK11664 77 GETVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGL--- 146 (812)
T ss_pred CceEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhC---
Confidence 6666666665542 1234689999999999998875 4699999999999996 56554432 234444444
Q ss_pred CCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHH-HHHHHHHHHHhcCcCCCCceE
Q 007280 329 PPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRS-HLMDLLHAQVANGVHGKQALT 407 (609)
Q Consensus 329 ~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~-~l~~~l~~~~~~~~~~~~~k~ 407 (609)
+++.|+|+||||++.+ . ...|+.+...+.+.. .. ..+.+.|..+....+.. .+...+...... ..+.+
T Consensus 147 -r~~lqlilmSATl~~~--~-l~~~~~~~~~I~~~g--r~-~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~----~~g~i 215 (812)
T PRK11664 147 -RDDLKLLIMSATLDND--R-LQQLLPDAPVIVSEG--RS-FPVERRYQPLPAHQRFDEAVARATAELLRQ----ESGSL 215 (812)
T ss_pred -CccceEEEEecCCCHH--H-HHHhcCCCCEEEecC--cc-ccceEEeccCchhhhHHHHHHHHHHHHHHh----CCCCE
Confidence 5678999999999865 2 345665544443321 11 12444444333333332 222233333321 25679
Q ss_pred EEEecchhhHHHHHHHHHh---CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCC-
Q 007280 408 LVFVETKKGADALEHWLYM---NGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPN- 483 (609)
Q Consensus 408 lVF~~t~~~~~~l~~~L~~---~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~- 483 (609)
|||++++++++.+++.|.. .++.+..+||+|++.+|.++++.|++|+.+|||||+++++|||||+|++||+++++.
T Consensus 216 LVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~ 295 (812)
T PRK11664 216 LLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERV 295 (812)
T ss_pred EEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCccc
Confidence 9999999999999999987 578899999999999999999999999999999999999999999999999988764
Q ss_pred -----------------CHHHHHHHhhhcccCCCCceEEEEEcCCC
Q 007280 484 -----------------DIDDYVHRIGRTGRAGKSGLATAFFNENN 512 (609)
Q Consensus 484 -----------------s~~~y~QriGRagR~g~~G~~~~f~~~~~ 512 (609)
|.++|+||.|||||. ++|.||.||++.+
T Consensus 296 ~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~ 340 (812)
T PRK11664 296 ARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQ 340 (812)
T ss_pred ccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHH
Confidence 346899999999999 7999999998653
No 61
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.6e-38 Score=319.69 Aligned_cols=327 Identities=21% Similarity=0.250 Sum_probs=242.9
Q ss_pred CCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 165 ~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
..+++.||......++.+ ++||+.|||.|||+++++-+...+...+. .+|+|+||+.|+.|..+.++
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~------------kvlfLAPTKPLV~Qh~~~~~ 79 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG------------KVLFLAPTKPLVLQHAEFCR 79 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC------------eEEEecCCchHHHHHHHHHH
Confidence 346788999888777765 99999999999999988877766655432 29999999999999999999
Q ss_pred HhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcC-CHHHHHHHHH
Q 007280 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-FEPQIRKIVQ 323 (609)
Q Consensus 245 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~g-f~~~i~~i~~ 323 (609)
++..-..-.++.+.|.....+....+. ..+|+|+||+.+.+-|..+.+++.++.+||||||||-.... |-......+.
T Consensus 80 ~v~~ip~~~i~~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~ 158 (542)
T COG1111 80 KVTGIPEDEIAALTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR 158 (542)
T ss_pred HHhCCChhheeeecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHH
Confidence 997776678888888887665555554 46999999999999999999999999999999999965432 2222232333
Q ss_pred HcCCCCCCCceEEEEEeeccH---HHHHHHHHhhcCcEEEEecccCCccc---cee------------------------
Q 007280 324 QMDMPPPGMRQTMLFSATFPK---EIQRLASDFLANYIFLAVGRVGSSTD---LIV------------------------ 373 (609)
Q Consensus 324 ~l~~~~~~~~q~il~SAT~~~---~~~~l~~~~l~~~~~~~~~~~~~~~~---~i~------------------------ 373 (609)
. ..+..++.+|||+-. .+++.++++--..+.+.........+ .+.
T Consensus 159 ~-----~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~ 233 (542)
T COG1111 159 S-----AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALK 233 (542)
T ss_pred h-----ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHH
Confidence 2 344579999999742 22232222211111111000000000 000
Q ss_pred --------------------------------------------------------------------------------
Q 007280 374 -------------------------------------------------------------------------------- 373 (609)
Q Consensus 374 -------------------------------------------------------------------------------- 373 (609)
T Consensus 234 ~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~ 313 (542)
T COG1111 234 PRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEA 313 (542)
T ss_pred HHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHh
Confidence
Q ss_pred -------------------------EEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCC
Q 007280 374 -------------------------QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG 428 (609)
Q Consensus 374 -------------------------q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~ 428 (609)
.....--...|...+.+++++.+.. +...++|||++.+++++.+.++|...+
T Consensus 314 ~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k---~~~~RvIVFT~yRdTae~i~~~L~~~~ 390 (542)
T COG1111 314 TKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEK---NGDSRVIVFTEYRDTAEEIVNFLKKIG 390 (542)
T ss_pred cccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhc---CCCceEEEEehhHhHHHHHHHHHHhcC
Confidence 0000000234555566666666543 236889999999999999999999988
Q ss_pred CCcE-Ee--------cCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCC
Q 007280 429 FPAT-TI--------HGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG 499 (609)
Q Consensus 429 ~~~~-~i--------hg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g 499 (609)
..+. .+ ..+|+|.++.+++++|+.|.++|||||+|+++|||||+|++||.|++-.|.-.++||.|||||.
T Consensus 391 ~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~- 469 (542)
T COG1111 391 IKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK- 469 (542)
T ss_pred CcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-
Confidence 7774 33 2469999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEEEcCCChh
Q 007280 500 KSGLATAFFNENNMS 514 (609)
Q Consensus 500 ~~G~~~~f~~~~~~~ 514 (609)
++|.+++++++....
T Consensus 470 r~Grv~vLvt~gtrd 484 (542)
T COG1111 470 RKGRVVVLVTEGTRD 484 (542)
T ss_pred CCCeEEEEEecCchH
Confidence 899999999987443
No 62
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.7e-38 Score=370.71 Aligned_cols=297 Identities=20% Similarity=0.322 Sum_probs=226.2
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHH
Q 007280 155 ALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE 234 (609)
Q Consensus 155 ~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 234 (609)
++.+.+......+|+++|+.+++.++.++|++++||||+|||+ |.+|++..+... ++++|||+||++
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~------------g~~vLIL~PTre 132 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK------------GKRCYIILPTTL 132 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc------------CCeEEEEeCHHH
Confidence 3444445445558999999999999999999999999999997 777776655332 245999999999
Q ss_pred HHHHHHHHHHHhhccCCeEEE---EEECCcChHHHH---HHHhc-CCCEEEeChHHHHHHHHcccccccceEEEEeccch
Q 007280 235 LSSQIHVEAKKFSYQTGVKVV---VAYGGAPINQQL---RELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEAD 307 (609)
Q Consensus 235 La~Qi~~~~~~~~~~~~i~~~---~~~gg~~~~~~~---~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah 307 (609)
||.|+++.+++++...++.+. +++|+.+..++. ..+.+ +++|||+||++|.+++.... . .+++|||||||
T Consensus 133 La~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD 209 (1171)
T TIGR01054 133 LVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVD 209 (1171)
T ss_pred HHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChH
Confidence 999999999999887666543 467888776543 33444 49999999999998876522 2 79999999999
Q ss_pred hhhh-----------cCCHHH-HHHHHHHcCC------------------CCCCCce--EEEEEee-ccHHHHHHHHHhh
Q 007280 308 RMLD-----------MGFEPQ-IRKIVQQMDM------------------PPPGMRQ--TMLFSAT-FPKEIQRLASDFL 354 (609)
Q Consensus 308 ~~l~-----------~gf~~~-i~~i~~~l~~------------------~~~~~~q--~il~SAT-~~~~~~~l~~~~l 354 (609)
+|++ +||.++ +..++..+.. ..+..+| +++|||| +|..+.. .++
T Consensus 210 ~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~ 286 (1171)
T TIGR01054 210 ALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLF 286 (1171)
T ss_pred hhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHc
Confidence 9998 788874 5665432210 0123444 6779999 5655432 234
Q ss_pred cCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecch---hhHHHHHHHHHhCCCCc
Q 007280 355 ANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETK---KGADALEHWLYMNGFPA 431 (609)
Q Consensus 355 ~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~---~~~~~l~~~L~~~~~~~ 431 (609)
.+...+.++.......++.+.+..+.. +...|.+++... ...+||||+++ +.|+.|++.|...++++
T Consensus 287 r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--------~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a 356 (1171)
T TIGR01054 287 RELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL--------GTGGIVYVSIDYGKEKAEEIAEFLENHGVKA 356 (1171)
T ss_pred ccccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc--------CCCEEEEEeccccHHHHHHHHHHHHhCCceE
Confidence 555556666655566677776654332 244566666432 34589999999 99999999999999999
Q ss_pred EEecCccCHHHHHHHHHhhhcCCCcEEEE----ccccccCCCCCC-ccEEEEcCCCCC
Q 007280 432 TTIHGDRTQQERELALRSFKSGKTPILVA----TDVAARGLDIPH-VAHVVNFDLPND 484 (609)
Q Consensus 432 ~~ihg~~~~~~R~~~~~~F~~g~~~ILVa----T~v~~~GlDip~-v~~VI~~d~p~s 484 (609)
..+||++++ .++++|++|+++|||| |++++||||||+ |++|||||+|..
T Consensus 357 ~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 357 VAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred EEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 999999973 6899999999999999 599999999999 899999999974
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.4e-38 Score=335.56 Aligned_cols=302 Identities=20% Similarity=0.164 Sum_probs=210.5
Q ss_pred CceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcCh
Q 007280 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~ 263 (609)
+++++||||||||++|++|++..+..... .+++|++|+++|+.|+++.++.+... ++..+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~-----------~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~ 66 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKA-----------DRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSF 66 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCC-----------CeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHH
Confidence 58999999999999999999977543221 24999999999999999999887432 33444443321
Q ss_pred H------------HHHHHHh------cCCCEEEeChHHHHHHHHcc-c---cccc--ceEEEEeccchhhhhcCCHHHHH
Q 007280 264 N------------QQLRELE------RGVDILVATPGRLVDLLERA-R---VSLQ--MIRYLALDEADRMLDMGFEPQIR 319 (609)
Q Consensus 264 ~------------~~~~~l~------~~~~IlV~Tpg~L~~~l~~~-~---~~l~--~i~~lVlDEah~~l~~gf~~~i~ 319 (609)
. ....... ...+|+|+||++++..+... . ..+. ..++|||||||.++++++.. +.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 67 KRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred HHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 1 0001111 13689999999998877651 1 1122 23789999999998865444 66
Q ss_pred HHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEe--ccchHHHHHHHHHHHHh
Q 007280 320 KIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH--ESDKRSHLMDLLHAQVA 397 (609)
Q Consensus 320 ~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~--~~~k~~~l~~~l~~~~~ 397 (609)
.++..+. ....|+++||||+|+.+++++..+............ .......+.+..+. ...+...+..++....
T Consensus 146 ~~l~~l~---~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~- 220 (358)
T TIGR01587 146 AVLEVLK---DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK-EERRFERHRFIKIESDKVGEISSLERLLEFIK- 220 (358)
T ss_pred HHHHHHH---HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc-cccccccccceeeccccccCHHHHHHHHHHhh-
Confidence 6665553 235789999999998777776654332111111100 00001112222222 1234444555543321
Q ss_pred cCcCCCCceEEEEecchhhHHHHHHHHHhCCC--CcEEecCccCHHHHHHH----HHhhhcCCCcEEEEccccccCCCCC
Q 007280 398 NGVHGKQALTLVFVETKKGADALEHWLYMNGF--PATTIHGDRTQQERELA----LRSFKSGKTPILVATDVAARGLDIP 471 (609)
Q Consensus 398 ~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~--~~~~ihg~~~~~~R~~~----~~~F~~g~~~ILVaT~v~~~GlDip 471 (609)
+..++||||++++.++.+++.|.+.+. .+..+||.+++.+|+++ ++.|++++.+|||||+++++||||+
T Consensus 221 -----~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~ 295 (358)
T TIGR01587 221 -----KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS 295 (358)
T ss_pred -----CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC
Confidence 267899999999999999999988765 48899999999999764 8999999999999999999999995
Q ss_pred CccEEEEcCCCCCHHHHHHHhhhcccCCCC----ceEEEEEcCCCh
Q 007280 472 HVAHVVNFDLPNDIDDYVHRIGRTGRAGKS----GLATAFFNENNM 513 (609)
Q Consensus 472 ~v~~VI~~d~p~s~~~y~QriGRagR~g~~----G~~~~f~~~~~~ 513 (609)
+++||++..| ++.|+||+||+||.|+. |.+++|....+.
T Consensus 296 -~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 296 -ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred -CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 8999998877 78999999999998864 367777765544
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=7.4e-38 Score=341.89 Aligned_cols=302 Identities=17% Similarity=0.189 Sum_probs=217.4
Q ss_pred CCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 165 ~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
...|+++|+++++.++.+++.++++|||+|||+++.. +...++.... ..+|||+||++|+.||.++++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~~~-----------~~vLilvpt~eL~~Q~~~~l~ 179 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLENYE-----------GKVLIIVPTTSLVTQMIDDFV 179 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhcCC-----------CeEEEEECcHHHHHHHHHHHH
Confidence 3589999999999999999999999999999997643 2222222211 139999999999999999999
Q ss_pred HhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHH
Q 007280 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (609)
Q Consensus 245 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~ 324 (609)
+|.......+..+++|.... ...+|+|+||++|.+... ..++++++||+||||++... .+..++..
T Consensus 180 ~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~ 245 (501)
T PHA02558 180 DYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITK 245 (501)
T ss_pred HhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHh
Confidence 98754445555666765432 347999999999976542 24678999999999998753 45666666
Q ss_pred cCCCCCCCceEEEEEeeccHHHHHHHH--HhhcCcEEEEecccC-----Ccccc-e--------------------eEEE
Q 007280 325 MDMPPPGMRQTMLFSATFPKEIQRLAS--DFLANYIFLAVGRVG-----SSTDL-I--------------------VQRV 376 (609)
Q Consensus 325 l~~~~~~~~q~il~SAT~~~~~~~l~~--~~l~~~~~~~~~~~~-----~~~~~-i--------------------~q~~ 376 (609)
+ +..+++++||||+.+....... .++. ++...+.... ..... + .+.+
T Consensus 246 ~----~~~~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 320 (501)
T PHA02558 246 L----DNCKFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEI 320 (501)
T ss_pred h----hccceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHH
Confidence 5 4457899999998653221111 1111 1111111000 00000 0 0000
Q ss_pred E-EEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCC
Q 007280 377 E-FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT 455 (609)
Q Consensus 377 ~-~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~ 455 (609)
. .+....+...+.+++.... ....++||||+++++++.|++.|...++++..+||++++.+|..+++.|++++.
T Consensus 321 ~~l~~~~~Rn~~I~~~~~~~~-----~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~ 395 (501)
T PHA02558 321 KYITSHTKRNKWIANLALKLA-----KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKG 395 (501)
T ss_pred HHHhccHHHHHHHHHHHHHHH-----hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCC
Confidence 0 0111122222333333222 125678999999999999999999999999999999999999999999999999
Q ss_pred cEEEEc-cccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCc
Q 007280 456 PILVAT-DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 502 (609)
Q Consensus 456 ~ILVaT-~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G 502 (609)
.||||| +++++|+|+|++++||+++++.+...|+||+||++|.+...
T Consensus 396 ~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 396 IIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred eEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 999998 99999999999999999999999999999999999987644
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.8e-37 Score=342.60 Aligned_cols=324 Identities=18% Similarity=0.221 Sum_probs=241.3
Q ss_pred CCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHH
Q 007280 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (609)
Q Consensus 164 ~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~ 243 (609)
|. .|+++|..+++.+++|+ |+.++||+|||++|++|++...+... .++||+||++||.|.++++
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~-------------~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGK-------------GVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCC-------------CeEEEeCCHHHHHHHHHHH
Confidence 44 89999999999888776 99999999999999999987666432 3999999999999999999
Q ss_pred HHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHccc------ccccceEEEEeccchhhh-hcC--
Q 007280 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML-DMG-- 313 (609)
Q Consensus 244 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~~------~~l~~i~~lVlDEah~~l-~~g-- 313 (609)
..+....++++.+++|+.+..++.+. ...|+|+|+||++| .|+|.... ..+..+.++||||||+|| |..
T Consensus 140 ~~l~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~t 218 (790)
T PRK09200 140 GQVYEFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQT 218 (790)
T ss_pred HHHHhhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCC
Confidence 99999999999999999885444333 35699999999999 56554421 346789999999999865 211
Q ss_pred -------------CHHHHHHHHHHcCCC--------------------------------CCC-----------------
Q 007280 314 -------------FEPQIRKIVQQMDMP--------------------------------PPG----------------- 331 (609)
Q Consensus 314 -------------f~~~i~~i~~~l~~~--------------------------------~~~----------------- 331 (609)
+...+..++..+... ...
T Consensus 219 pliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~ 298 (790)
T PRK09200 219 PLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVL 298 (790)
T ss_pred ceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHH
Confidence 111111222211100 000
Q ss_pred ----------------------------------------------------------------CceEEEEEeeccHHHH
Q 007280 332 ----------------------------------------------------------------MRQTMLFSATFPKEIQ 347 (609)
Q Consensus 332 ----------------------------------------------------------------~~q~il~SAT~~~~~~ 347 (609)
-..+..||.|...+-.
T Consensus 299 ~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~ 378 (790)
T PRK09200 299 FKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEK 378 (790)
T ss_pred hhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHH
Confidence 0034556666544444
Q ss_pred HHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC
Q 007280 348 RLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (609)
Q Consensus 348 ~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~ 427 (609)
++.+.|--+.+ .+...-.....-.....++....|...+++.+..... ...++||||+|++.++.|+..|...
T Consensus 379 e~~~~Y~l~v~--~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~-----~~~pvLIf~~t~~~se~l~~~L~~~ 451 (790)
T PRK09200 379 EFFEVYNMEVV--QIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHE-----TGRPVLIGTGSIEQSETFSKLLDEA 451 (790)
T ss_pred HHHHHhCCcEE--ECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 44333322222 2211111111111223455667788888887765422 3678999999999999999999999
Q ss_pred CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCC---CCcc-----EEEEcCCCCCHHHHHHHhhhcccCC
Q 007280 428 GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDI---PHVA-----HVVNFDLPNDIDDYVHRIGRTGRAG 499 (609)
Q Consensus 428 ~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDi---p~v~-----~VI~~d~p~s~~~y~QriGRagR~g 499 (609)
++++..+|+++.+.++..+...++.| .|+|||++++||+|| |+|. |||+|++|.+...|+||+|||||.|
T Consensus 452 gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G 529 (790)
T PRK09200 452 GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG 529 (790)
T ss_pred CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC
Confidence 99999999999999988888888766 699999999999999 6998 9999999999999999999999999
Q ss_pred CCceEEEEEcCCCh
Q 007280 500 KSGLATAFFNENNM 513 (609)
Q Consensus 500 ~~G~~~~f~~~~~~ 513 (609)
++|.+++|++.+|.
T Consensus 530 ~~G~s~~~is~eD~ 543 (790)
T PRK09200 530 DPGSSQFFISLEDD 543 (790)
T ss_pred CCeeEEEEEcchHH
Confidence 99999999997664
No 66
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.3e-36 Score=334.00 Aligned_cols=323 Identities=16% Similarity=0.186 Sum_probs=227.9
Q ss_pred CCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhh
Q 007280 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (609)
Q Consensus 168 pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~ 247 (609)
++|+|.+++..+..++..|++++||+|||++|++|++.+.+... .++||+|+++||.|+++++..+.
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~-------------~V~VVTpn~yLA~Rdae~m~~l~ 135 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGK-------------GAMLVTTNDYLAKRDAEEMGPVY 135 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCC-------------ceEEeCCCHHHHHHHHHHHHHHH
Confidence 45555555554444455799999999999999999877665432 29999999999999999999999
Q ss_pred ccCCeEEEEEECCcC---hHHHHHHHhcCCCEEEeChHHH-HHHHHcc------cccccceEEEEeccchhhhhcC----
Q 007280 248 YQTGVKVVVAYGGAP---INQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRMLDMG---- 313 (609)
Q Consensus 248 ~~~~i~~~~~~gg~~---~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~------~~~l~~i~~lVlDEah~~l~~g---- 313 (609)
...++++.+++++.. ...+.+....+|+|+|+||++| .++|... ...+..+.++|+||||.||-..
T Consensus 136 ~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartp 215 (762)
T TIGR03714 136 EWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTP 215 (762)
T ss_pred hhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCC
Confidence 999999988877632 2333444456799999999999 5655331 2346789999999999986311
Q ss_pred ------------CHHHHHHHHHHcCCCC----CCCc--------------------------------------------
Q 007280 314 ------------FEPQIRKIVQQMDMPP----PGMR-------------------------------------------- 333 (609)
Q Consensus 314 ------------f~~~i~~i~~~l~~~~----~~~~-------------------------------------------- 333 (609)
+...+..++..+.... ....
T Consensus 216 liisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~ 295 (762)
T TIGR03714 216 LVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLF 295 (762)
T ss_pred eeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHH
Confidence 1112223333332100 0001
Q ss_pred -----------------------------------------------------------------eEEEEEeeccHHHHH
Q 007280 334 -----------------------------------------------------------------QTMLFSATFPKEIQR 348 (609)
Q Consensus 334 -----------------------------------------------------------------q~il~SAT~~~~~~~ 348 (609)
++..||.|...+..+
T Consensus 296 ~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~E 375 (762)
T TIGR03714 296 KRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKE 375 (762)
T ss_pred hcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHH
Confidence 233334443322223
Q ss_pred HHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCC
Q 007280 349 LASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG 428 (609)
Q Consensus 349 l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~ 428 (609)
+.+.|--+. +.+...-.....-.....++....|...+++.+..... +..++||||++++.++.++..|...+
T Consensus 376 f~~iY~l~v--~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~-----~~~pvLIft~s~~~se~ls~~L~~~g 448 (762)
T TIGR03714 376 FIETYSLSV--VKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHE-----TGQPVLLITGSVEMSEIYSELLLREG 448 (762)
T ss_pred HHHHhCCCE--EEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhh-----CCCCEEEEECcHHHHHHHHHHHHHCC
Confidence 222111111 11111000000011223455566777778877765432 36789999999999999999999999
Q ss_pred CCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCC---------CccEEEEcCCCCCHHHHHHHhhhcccCC
Q 007280 429 FPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIP---------HVAHVVNFDLPNDIDDYVHRIGRTGRAG 499 (609)
Q Consensus 429 ~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip---------~v~~VI~~d~p~s~~~y~QriGRagR~g 499 (609)
+++..+|+++.+.++..+.+.++.| .|+|||++++||+||+ ++.+|++|++|....+ +||+|||||.|
T Consensus 449 i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG 525 (762)
T TIGR03714 449 IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQG 525 (762)
T ss_pred CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCC
Confidence 9999999999999998888877777 6999999999999999 9999999999998777 99999999999
Q ss_pred CCceEEEEEcCCCh
Q 007280 500 KSGLATAFFNENNM 513 (609)
Q Consensus 500 ~~G~~~~f~~~~~~ 513 (609)
++|.+++|++.+|.
T Consensus 526 ~~G~s~~~is~eD~ 539 (762)
T TIGR03714 526 DPGSSQFFVSLEDD 539 (762)
T ss_pred CceeEEEEEccchh
Confidence 99999999997664
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.4e-36 Score=329.82 Aligned_cols=322 Identities=18% Similarity=0.215 Sum_probs=242.1
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
..|+++|..+.+.+..|+ |+.++||+|||++|++|++...+... .|+||+||++||.|.++++.+
T Consensus 55 ~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~-------------~V~VvTpt~~LA~qdae~~~~ 119 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK-------------GVHVVTVNDYLAQRDAEWMGQ 119 (745)
T ss_pred CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC-------------CEEEEcCCHHHHHHHHHHHHH
Confidence 378999999988887765 99999999999999999965555432 299999999999999999999
Q ss_pred hhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHcc------cccccceEEEEeccchhhhh-cCCHH-
Q 007280 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRMLD-MGFEP- 316 (609)
Q Consensus 246 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~------~~~l~~i~~lVlDEah~~l~-~gf~~- 316 (609)
+....++++.+++++.+..++...+ .++|+|+||++| .|+|... .+.+..+.++|+||+|+|+- ....+
T Consensus 120 l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpL 197 (745)
T TIGR00963 120 VYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPL 197 (745)
T ss_pred HhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHH
Confidence 9999999999999998865544433 489999999999 8988765 24678899999999999763 11000
Q ss_pred --------------HHHHHHHHcCCC--------------------------------CC--------------------
Q 007280 317 --------------QIRKIVQQMDMP--------------------------------PP-------------------- 330 (609)
Q Consensus 317 --------------~i~~i~~~l~~~--------------------------------~~-------------------- 330 (609)
....|...+... ..
T Consensus 198 iisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~ 277 (745)
T TIGR00963 198 IISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFE 277 (745)
T ss_pred hhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHh
Confidence 001111111000 00
Q ss_pred ---------------------------------------------C----------------CceEEEEEeeccHHHHHH
Q 007280 331 ---------------------------------------------G----------------MRQTMLFSATFPKEIQRL 349 (609)
Q Consensus 331 ---------------------------------------------~----------------~~q~il~SAT~~~~~~~l 349 (609)
+ -.++..||.|...+..++
T Consensus 278 ~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~ 357 (745)
T TIGR00963 278 KDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEF 357 (745)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHH
Confidence 0 013555677765555555
Q ss_pred HHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCC
Q 007280 350 ASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGF 429 (609)
Q Consensus 350 ~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~ 429 (609)
...|--+.+.+.. .-.....-.....+.....|...+.+.+..... +..++||||++++.++.+++.|...++
T Consensus 358 ~~iY~l~vv~IPt--nkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~-----~grpvLV~t~si~~se~ls~~L~~~gi 430 (745)
T TIGR00963 358 EKIYNLEVVVVPT--NRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHA-----KGQPVLVGTTSVEKSELLSNLLKERGI 430 (745)
T ss_pred HHHhCCCEEEeCC--CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHHHHHcCC
Confidence 4444333322211 111111111122344455676666666654432 378899999999999999999999999
Q ss_pred CcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCC-------ccEEEEcCCCCCHHHHHHHhhhcccCCCCc
Q 007280 430 PATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPH-------VAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 502 (609)
Q Consensus 430 ~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~-------v~~VI~~d~p~s~~~y~QriGRagR~g~~G 502 (609)
++..+|+. +.+|+..+..|..+...|+|||++|+||+||+. .-|||++++|.+...|.||+|||||.|.+|
T Consensus 431 ~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G 508 (745)
T TIGR00963 431 PHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPG 508 (745)
T ss_pred CeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCc
Confidence 99999998 889999999999999999999999999999998 559999999999999999999999999999
Q ss_pred eEEEEEcCCCh
Q 007280 503 LATAFFNENNM 513 (609)
Q Consensus 503 ~~~~f~~~~~~ 513 (609)
.+.+|++.+|.
T Consensus 509 ~s~~~ls~eD~ 519 (745)
T TIGR00963 509 SSRFFLSLEDN 519 (745)
T ss_pred ceEEEEeccHH
Confidence 99999998765
No 68
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2e-35 Score=340.98 Aligned_cols=327 Identities=24% Similarity=0.284 Sum_probs=239.2
Q ss_pred CCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 165 ~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
..+|+++|++++..++.+ ++|+++|||+|||+++++++...+. .. ..++|||+||++|+.|+.+.++
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-~~-----------~~~vLvl~Pt~~L~~Q~~~~~~ 79 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-KK-----------GGKVLILAPTKPLVEQHAEFFR 79 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-hC-----------CCeEEEEeCcHHHHHHHHHHHH
Confidence 347899999999888876 9999999999999999988877662 11 1249999999999999999999
Q ss_pred HhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHH
Q 007280 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (609)
Q Consensus 245 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~ 324 (609)
++......++..+.|+.+..+. ..+...++|+|+||+.+...+....+.+.++++|||||||++........+...+..
T Consensus 80 ~~~~~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~ 158 (773)
T PRK13766 80 KFLNIPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHE 158 (773)
T ss_pred HHhCCCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHh
Confidence 9865545577777887765543 344456899999999998888777788899999999999998754333333333322
Q ss_pred cCCCCCCCceEEEEEeeccH---HHHHHHHHhhcCcEEEEeccc------------------------------------
Q 007280 325 MDMPPPGMRQTMLFSATFPK---EIQRLASDFLANYIFLAVGRV------------------------------------ 365 (609)
Q Consensus 325 l~~~~~~~~q~il~SAT~~~---~~~~l~~~~l~~~~~~~~~~~------------------------------------ 365 (609)
. ....++++||||+.. .+..++..+....+.+.....
T Consensus 159 ~----~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~ 234 (773)
T PRK13766 159 D----AKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKD 234 (773)
T ss_pred c----CCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 2 234579999999732 222333222111111100000
Q ss_pred --------CCc---cc------------ceeEE-----------------------------------------------
Q 007280 366 --------GSS---TD------------LIVQR----------------------------------------------- 375 (609)
Q Consensus 366 --------~~~---~~------------~i~q~----------------------------------------------- 375 (609)
+.. .. .+.+.
T Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~ 314 (773)
T PRK13766 235 RLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEA 314 (773)
T ss_pred HHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc
Confidence 000 00 00000
Q ss_pred -------------------------EEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCC
Q 007280 376 -------------------------VEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (609)
Q Consensus 376 -------------------------~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~ 430 (609)
........|...|.++|...... ....++||||+++++|+.|.++|...++.
T Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~---~~~~kvlIF~~~~~t~~~L~~~L~~~~~~ 391 (773)
T PRK13766 315 RSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGK---NPDSRIIVFTQYRDTAEKIVDLLEKEGIK 391 (773)
T ss_pred cccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhc---CCCCeEEEEeCcHHHHHHHHHHHHhCCCc
Confidence 00001123444455555444322 24778999999999999999999999999
Q ss_pred cEEecCc--------cCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCc
Q 007280 431 ATTIHGD--------RTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 502 (609)
Q Consensus 431 ~~~ihg~--------~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G 502 (609)
+..+||. |++.+|..++++|++++.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.+ +|
T Consensus 392 ~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~ 470 (773)
T PRK13766 392 AVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EG 470 (773)
T ss_pred eEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CC
Confidence 9999986 99999999999999999999999999999999999999999999999999999999999985 58
Q ss_pred eEEEEEcCCCh
Q 007280 503 LATAFFNENNM 513 (609)
Q Consensus 503 ~~~~f~~~~~~ 513 (609)
.+++|+.....
T Consensus 471 ~v~~l~~~~t~ 481 (773)
T PRK13766 471 RVVVLIAKGTR 481 (773)
T ss_pred EEEEEEeCCCh
Confidence 89999886554
No 69
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=310.86 Aligned_cols=345 Identities=22% Similarity=0.292 Sum_probs=278.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCCHHHHHHHh-hHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccc
Q 007280 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIP-ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (609)
Q Consensus 146 ~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~-~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~ 224 (609)
..+++++++.+...++..|++.+.|+|.-++. -+++|.|+++..+|+||||++.-++-+..++..+.
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~------------ 262 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK------------ 262 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCC------------
Confidence 46789999999999999999999999999996 46699999999999999999999988888887442
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHH----HHhcCCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLR----ELERGVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~----~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
+.|+|+|..+||+|.+++++.-....++++..-+|-.-++.... .....+||+|+|++-+..+|... ..+.++..
T Consensus 263 KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGt 341 (830)
T COG1202 263 KMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGT 341 (830)
T ss_pred eEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccccccce
Confidence 28999999999999999998877778888877777654433321 11235799999999997777766 55999999
Q ss_pred EEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEe
Q 007280 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH 380 (609)
Q Consensus 301 lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~ 380 (609)
||+||+|.+-|....+.+.-++..++... +..|+|.+|||+.+. +++++.+--+.+.+.-..+ .+..++.++.
T Consensus 342 VVIDEiHtL~deERG~RLdGLI~RLr~l~-~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~RPV-----plErHlvf~~ 414 (830)
T COG1202 342 VVIDEIHTLEDEERGPRLDGLIGRLRYLF-PGAQFIYLSATVGNP-EELAKKLGAKLVLYDERPV-----PLERHLVFAR 414 (830)
T ss_pred EEeeeeeeccchhcccchhhHHHHHHHhC-CCCeEEEEEeecCCh-HHHHHHhCCeeEeecCCCC-----ChhHeeeeec
Confidence 99999998887777788887777765543 468999999998544 5677766555554432222 2444555665
Q ss_pred -ccchHHHHHHHHHHHHhc-CcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEE
Q 007280 381 -ESDKRSHLMDLLHAQVAN-GVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPIL 458 (609)
Q Consensus 381 -~~~k~~~l~~~l~~~~~~-~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~IL 458 (609)
..+|...+..+.+..... ...+-.+++|||+++++.|..|++.|...|+++.++|++|+..+|..+...|.++.+.++
T Consensus 415 ~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~V 494 (830)
T COG1202 415 NESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAV 494 (830)
T ss_pred CchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceE
Confidence 667777777777654433 334557889999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEE---EcCCCC-CHHHHHHHhhhcccCCC--CceEEEEEcC
Q 007280 459 VATDVAARGLDIPHVAHVV---NFDLPN-DIDDYVHRIGRTGRAGK--SGLATAFFNE 510 (609)
Q Consensus 459 VaT~v~~~GlDip~v~~VI---~~d~p~-s~~~y~QriGRagR~g~--~G~~~~f~~~ 510 (609)
|+|.+++.|+|+|.-.+|+ -++.-| ++.+|.|+.|||||-+- .|++++++.+
T Consensus 495 VTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 495 VTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred eehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 9999999999999755443 233333 89999999999999764 7999999865
No 70
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.7e-36 Score=344.67 Aligned_cols=304 Identities=20% Similarity=0.274 Sum_probs=212.5
Q ss_pred HHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcC----cHHHHHHHHHHHHH-h
Q 007280 172 QRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP----TRELSSQIHVEAKK-F 246 (609)
Q Consensus 172 Q~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~P----tr~La~Qi~~~~~~-~ 246 (609)
..+.+..+.+++.+|++++||||||+ ++|.+.... .... ...++|..| +++||.++++++.. +
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~--g~g~--------~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLEL--GRGV--------KGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHc--CCCC--------CCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 44556677778889999999999999 578543221 1110 112666678 46888888887764 3
Q ss_pred hccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccch-hhhhcCCHHH-HHHHHHH
Q 007280 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEAD-RMLDMGFEPQ-IRKIVQQ 324 (609)
Q Consensus 247 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah-~~l~~gf~~~-i~~i~~~ 324 (609)
....++.+ .... .....++|+|+|||+|++++..... ++.+++||||||| ++++++|... ++.++..
T Consensus 147 G~~VGY~v-------rf~~---~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~ 215 (1294)
T PRK11131 147 GGCVGYKV-------RFND---QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR 215 (1294)
T ss_pred cceeceee-------cCcc---ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc
Confidence 33223221 1111 1234689999999999999987655 9999999999999 6899988753 3333221
Q ss_pred cCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccc---hHHHHHHHHHHHHhcCcC
Q 007280 325 MDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD---KRSHLMDLLHAQVANGVH 401 (609)
Q Consensus 325 l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~---k~~~l~~~l~~~~~~~~~ 401 (609)
.++.|+|+||||++. +.+.+.|...++. .+... . ..+...+..+.... +...+..++...... ..
T Consensus 216 -----rpdlKvILmSATid~--e~fs~~F~~apvI-~V~Gr--~-~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l-~~ 283 (1294)
T PRK11131 216 -----RPDLKVIITSATIDP--ERFSRHFNNAPII-EVSGR--T-YPVEVRYRPIVEEADDTERDQLQAIFDAVDEL-GR 283 (1294)
T ss_pred -----CCCceEEEeeCCCCH--HHHHHHcCCCCEE-EEcCc--c-ccceEEEeecccccchhhHHHHHHHHHHHHHH-hc
Confidence 346899999999975 4666666655543 33211 1 12333333332211 223333332221110 11
Q ss_pred CCCceEEEEecchhhHHHHHHHHHhCCCC---cEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEE
Q 007280 402 GKQALTLVFVETKKGADALEHWLYMNGFP---ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN 478 (609)
Q Consensus 402 ~~~~k~lVF~~t~~~~~~l~~~L~~~~~~---~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~ 478 (609)
...+.+|||++++++++.+++.|...+++ +.++||+|++.+|..+++. .+..+|||||+++++|||||+|++||+
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEE
Confidence 23577999999999999999999988765 6689999999999999986 478899999999999999999999999
Q ss_pred cCC---------------C---CCHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 479 FDL---------------P---NDIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 479 ~d~---------------p---~s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
+++ | .|.++|+||+|||||. ++|.|+.||++++.
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 863 3 4668999999999999 79999999997654
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=6.3e-35 Score=305.38 Aligned_cols=296 Identities=19% Similarity=0.171 Sum_probs=201.1
Q ss_pred HHHHHHhhHhCCCC--ceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhc
Q 007280 171 VQRHAIPISIGGRD--LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (609)
Q Consensus 171 iQ~~~i~~i~~~~d--~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~ 248 (609)
+|.++++.+.++.+ ++++||||||||.+|++|++.. . ..+++++|+++|+.|+++.++++..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----~------------~~~~~~~P~~aL~~~~~~~~~~~~~ 64 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----E------------NDTIALYPTNALIEDQTEAIKEFVD 64 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----C------------CCEEEEeChHHHHHHHHHHHHHHHH
Confidence 59999999998764 7889999999999999998741 1 1289999999999999999998864
Q ss_pred c----CCeEEEEEECCcChH--HH----------------HH--HHhcCCCEEEeChHHHHHHHHccc--------cccc
Q 007280 249 Q----TGVKVVVAYGGAPIN--QQ----------------LR--ELERGVDILVATPGRLVDLLERAR--------VSLQ 296 (609)
Q Consensus 249 ~----~~i~~~~~~gg~~~~--~~----------------~~--~l~~~~~IlV~Tpg~L~~~l~~~~--------~~l~ 296 (609)
. .++.+..+.|..... .. .+ .....++|+++||+.|..++.... ..+.
T Consensus 65 ~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~ 144 (357)
T TIGR03158 65 VFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYT 144 (357)
T ss_pred hcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhc
Confidence 3 245555555542211 00 00 012357899999999977654321 1257
Q ss_pred ceEEEEeccchhhhhcCC-----HHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHh--hcCcEEEEecccCC--
Q 007280 297 MIRYLALDEADRMLDMGF-----EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF--LANYIFLAVGRVGS-- 367 (609)
Q Consensus 297 ~i~~lVlDEah~~l~~gf-----~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~--l~~~~~~~~~~~~~-- 367 (609)
.+++|||||+|.+..... ......++... ....+++++|||+++.+.+.+... +..++....+..-.
T Consensus 145 ~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~ 220 (357)
T TIGR03158 145 KFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFF----ECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFP 220 (357)
T ss_pred CCCEEEEecccccCcccchhhhhhhHHHHHHHhh----hcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccC
Confidence 899999999998664331 11222333322 123689999999999877777664 34443332222000
Q ss_pred -------cc---------cceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCC--C
Q 007280 368 -------ST---------DLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG--F 429 (609)
Q Consensus 368 -------~~---------~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~--~ 429 (609)
.. +.+.+.+.. ....+...+..++.............++||||+|++.++.+++.|...+ +
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~ 299 (357)
T TIGR03158 221 DNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGD 299 (357)
T ss_pred CChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCc
Confidence 00 123333322 2233443333333322211111235689999999999999999998764 5
Q ss_pred CcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcc
Q 007280 430 PATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG 496 (609)
Q Consensus 430 ~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRag 496 (609)
.+..+||.+++.+|+++. +..|||||+++++||||+.+ +|| ++ |.+.+.|+||+||+|
T Consensus 300 ~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 300 DIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred eEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 778899999999987653 78899999999999999987 666 55 889999999999996
No 72
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.7e-35 Score=329.49 Aligned_cols=336 Identities=21% Similarity=0.276 Sum_probs=255.9
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHhhH-hCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEE
Q 007280 151 DLGEALNLNIRRCKYVKPTPVQRHAIPIS-IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALIL 229 (609)
Q Consensus 151 ~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i-~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil 229 (609)
.+++.+.+-++..++..+.+.|+.++... .+++|+|||+|||||||+++++.|+..+.+.+. ++|+|
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~------------k~vYi 82 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGG------------KVVYI 82 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCC------------cEEEE
Confidence 46777777788888878888888888644 467999999999999999999999999887521 29999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhh
Q 007280 230 APTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (609)
Q Consensus 230 ~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~ 309 (609)
||+++||.++++++++| ...+++|...+|+.....+ ...+++|+|+||++|..++.+....+..+++||+||+|.+
T Consensus 83 vPlkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l 158 (766)
T COG1204 83 VPLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLL 158 (766)
T ss_pred eChHHHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeec
Confidence 99999999999999954 4569999999999875442 2245899999999998888877667889999999999998
Q ss_pred hhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCccc--ceeEEEEEEeccc----
Q 007280 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTD--LIVQRVEFVHESD---- 383 (609)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~--~i~q~~~~~~~~~---- 383 (609)
.+....+.+..|+..+.... ...|++.+|||+|+. .+++...-.+.+ ....+...... ...+.+.......
T Consensus 159 ~d~~RG~~lE~iv~r~~~~~-~~~rivgLSATlpN~-~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~ 235 (766)
T COG1204 159 GDRTRGPVLESIVARMRRLN-ELIRIVGLSATLPNA-EEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWP 235 (766)
T ss_pred CCcccCceehhHHHHHHhhC-cceEEEEEeeecCCH-HHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCcccccc
Confidence 88877888888888775432 237999999999864 455554333333 22222222221 1223333333222
Q ss_pred --hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC----------------------------------
Q 007280 384 --KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN---------------------------------- 427 (609)
Q Consensus 384 --k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~---------------------------------- 427 (609)
+...+++++...... ..++||||++++.+...+..|...
T Consensus 236 ~~~~~~~~~~v~~~~~~-----~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~ 310 (766)
T COG1204 236 LLIDNLALELVLESLAE-----GGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELA 310 (766)
T ss_pred ccchHHHHHHHHHHHhc-----CCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHH
Confidence 334555555555543 778999999999999999888720
Q ss_pred ---CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEE----EcC-----CCCCHHHHHHHhhhc
Q 007280 428 ---GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVV----NFD-----LPNDIDDYVHRIGRT 495 (609)
Q Consensus 428 ---~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI----~~d-----~p~s~~~y~QriGRa 495 (609)
-..+..+|.+|+.++|..+.+.|+.|+++|||||..++.|+|.|.-.+|| .|| .+-++-+|+|++|||
T Consensus 311 e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRA 390 (766)
T COG1204 311 ELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRA 390 (766)
T ss_pred HHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcC
Confidence 12345689999999999999999999999999999999999999877666 566 566899999999999
Q ss_pred ccCCC--CceEEEEEcC
Q 007280 496 GRAGK--SGLATAFFNE 510 (609)
Q Consensus 496 gR~g~--~G~~~~f~~~ 510 (609)
||.|- .|.++++.+.
T Consensus 391 GRPg~d~~G~~~i~~~~ 407 (766)
T COG1204 391 GRPGYDDYGEAIILATS 407 (766)
T ss_pred CCCCcCCCCcEEEEecC
Confidence 99765 5666766643
No 73
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=5.4e-35 Score=315.03 Aligned_cols=336 Identities=24% Similarity=0.299 Sum_probs=234.0
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcC
Q 007280 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (609)
Q Consensus 152 l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 231 (609)
+++.....+.--....++.||.+.+..++ ++++||++|||+|||.++...++.++-..+. -++|+++|
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-----------~KiVF~aP 114 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-----------GKVVFLAP 114 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-----------ceEEEeeC
Confidence 34444444444455679999999998888 9999999999999999888877777654332 23999999
Q ss_pred cHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccc-cccceEEEEeccchhhh
Q 007280 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRML 310 (609)
Q Consensus 232 tr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~-~l~~i~~lVlDEah~~l 310 (609)
|+-|+.|+...+..++.. ..+....++.........+...++|+|+||+.|.+.|..... .|+.+.+|||||||+-.
T Consensus 115 ~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~ 192 (746)
T KOG0354|consen 115 TRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTS 192 (746)
T ss_pred CchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccccc
Confidence 999999998777777655 455555666433333335556689999999999998877543 36999999999999976
Q ss_pred hcC-CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHH-------------------------------------
Q 007280 311 DMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASD------------------------------------- 352 (609)
Q Consensus 311 ~~g-f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~------------------------------------- 352 (609)
... |...++..+..-. ...|+|++|||+.++.+.....
T Consensus 193 kn~~Y~~Vmr~~l~~k~----~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~ 268 (746)
T KOG0354|consen 193 KNHPYNNIMREYLDLKN----QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCE 268 (746)
T ss_pred ccccHHHHHHHHHHhhh----ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhh
Confidence 543 4445545554432 2239999999985432222110
Q ss_pred -------------hhcC-----cEEEEe----------cccCCcccce--eEE--------------------EEEE---
Q 007280 353 -------------FLAN-----YIFLAV----------GRVGSSTDLI--VQR--------------------VEFV--- 379 (609)
Q Consensus 353 -------------~l~~-----~~~~~~----------~~~~~~~~~i--~q~--------------------~~~~--- 379 (609)
++.. .+.+.. .......... .+. +.++
T Consensus 269 ~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l 348 (746)
T KOG0354|consen 269 RDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDAL 348 (746)
T ss_pred hhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHH
Confidence 0000 000000 0000000000 000 0000
Q ss_pred -------------------------------------------eccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhh
Q 007280 380 -------------------------------------------HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKG 416 (609)
Q Consensus 380 -------------------------------------------~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~ 416 (609)
....|.+.|.+.|..+.. .++..++||||+++..
T Consensus 349 ~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~---~~~dsR~IIFve~R~s 425 (746)
T KOG0354|consen 349 DYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFE---QNPDSRTIIFVETRES 425 (746)
T ss_pred hhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhh---cCCCccEEEEEehHHH
Confidence 012334444455544443 3467889999999999
Q ss_pred HHHHHHHHHh-C--CCCcEEec--------CccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCH
Q 007280 417 ADALEHWLYM-N--GFPATTIH--------GDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDI 485 (609)
Q Consensus 417 ~~~l~~~L~~-~--~~~~~~ih--------g~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~ 485 (609)
|+.|..+|.. . ++....+- -+|+|.++.++++.|++|.++|||||+|+++||||+.|++||-||...++
T Consensus 426 a~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snp 505 (746)
T KOG0354|consen 426 ALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNP 505 (746)
T ss_pred HHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccH
Confidence 9999999973 2 23333332 37999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCCceEEEEEcC
Q 007280 486 DDYVHRIGRTGRAGKSGLATAFFNE 510 (609)
Q Consensus 486 ~~y~QriGRagR~g~~G~~~~f~~~ 510 (609)
..++||.|| ||+ +.|+|+++++.
T Consensus 506 IrmIQrrGR-gRa-~ns~~vll~t~ 528 (746)
T KOG0354|consen 506 IRMVQRRGR-GRA-RNSKCVLLTTG 528 (746)
T ss_pred HHHHHHhcc-ccc-cCCeEEEEEcc
Confidence 999999999 999 78999999984
No 74
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=7.3e-35 Score=289.09 Aligned_cols=333 Identities=19% Similarity=0.281 Sum_probs=248.2
Q ss_pred CCCCC-CCHHHHHHHhhHh-CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHH
Q 007280 163 CKYVK-PTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (609)
Q Consensus 163 ~~~~~-pt~iQ~~~i~~i~-~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~ 240 (609)
+||.+ -++.|.+|+..+. ..+|+.+++|||+||+++|.||.|.+ .+ ..||++|..+|...+.
T Consensus 15 FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~g-------------ITIV~SPLiALIkDQi 78 (641)
T KOG0352|consen 15 FGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---GG-------------ITIVISPLIALIKDQI 78 (641)
T ss_pred hCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---CC-------------eEEEehHHHHHHHHHH
Confidence 46655 4889999998877 46899999999999999999998732 21 3899999999999988
Q ss_pred HHHHHhhccCCeEEEEEECCcChHHHHH---HHh---cCCCEEEeChHHH-----HHHHHcccccccceEEEEeccchhh
Q 007280 241 VEAKKFSYQTGVKVVVAYGGAPINQQLR---ELE---RGVDILVATPGRL-----VDLLERARVSLQMIRYLALDEADRM 309 (609)
Q Consensus 241 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~---~~~~IlV~Tpg~L-----~~~l~~~~~~l~~i~~lVlDEah~~ 309 (609)
+-+.++ .+.+..+..-.+..+..+ .|. ....||+.||+.- .++|+ ...+-.-+.|+|+||||+.
T Consensus 79 DHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDEAHCV 153 (641)
T KOG0352|consen 79 DHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDEAHCV 153 (641)
T ss_pred HHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEEechhhhH
Confidence 888885 455555555555444333 232 2468999999864 23332 2233455899999999999
Q ss_pred hhcC--CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHh--hcCcEEEEecccCCcccceeEEEEEEe-ccch
Q 007280 310 LDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF--LANYIFLAVGRVGSSTDLIVQRVEFVH-ESDK 384 (609)
Q Consensus 310 l~~g--f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~--l~~~~~~~~~~~~~~~~~i~q~~~~~~-~~~k 384 (609)
.+|| |++++.++-..... -++...|.++||.+.++++-+..- |.+|+.+.. ......++...+.+-. -.+-
T Consensus 154 SQWGHDFRPDYL~LG~LRS~--~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk--TP~FR~NLFYD~~~K~~I~D~ 229 (641)
T KOG0352|consen 154 SQWGHDFRPDYLTLGSLRSV--CPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFK--TPTFRDNLFYDNHMKSFITDC 229 (641)
T ss_pred hhhccccCcchhhhhhHHhh--CCCCceEEeecccChhHHHHHHHHHhhcCcHHhcc--CcchhhhhhHHHHHHHHhhhH
Confidence 9998 99999887665322 234668999999999988765443 445544432 2222222211110000 0112
Q ss_pred HHHHHHHHHHHHh------cCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEE
Q 007280 385 RSHLMDLLHAQVA------NGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPIL 458 (609)
Q Consensus 385 ~~~l~~~l~~~~~------~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~IL 458 (609)
...|.++-....- ...+...+..||||.|++.|+.++-.|...|+++..+|.++...+|+++.+.|.+++.+||
T Consensus 230 ~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI 309 (641)
T KOG0352|consen 230 LTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVI 309 (641)
T ss_pred hHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEE
Confidence 2233333322221 1223335668999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHH
Q 007280 459 VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLT 520 (609)
Q Consensus 459 VaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~ 520 (609)
+||..+.+|+|-|+|++|||+++|.|++-|.|-.|||||.|+...|-++|..+|...+.-|+
T Consensus 310 ~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 310 AATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred EEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887665543
No 75
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=4.1e-34 Score=321.79 Aligned_cols=337 Identities=21% Similarity=0.295 Sum_probs=262.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcH
Q 007280 154 EALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (609)
Q Consensus 154 ~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 233 (609)
+.+......+++..++|-|.++|..++.|+|+++.+|||.||+++|.||++- .. ...|||+|..
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l---~~-------------gitvVISPL~ 314 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL---LG-------------GVTVVISPLI 314 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc---cC-------------CceEEeccHH
Confidence 3444555667999999999999999999999999999999999999999872 11 2489999999
Q ss_pred HHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH---hc---CCCEEEeChHHHHHH--HHcccccccc---eEEEE
Q 007280 234 ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER---GVDILVATPGRLVDL--LERARVSLQM---IRYLA 302 (609)
Q Consensus 234 ~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~---~~~IlV~Tpg~L~~~--l~~~~~~l~~---i~~lV 302 (609)
.|.+.+...+.+ .+|....+.++....++...+ .. .++|++.||+++... +......+.. +.++|
T Consensus 315 SLm~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~v 390 (941)
T KOG0351|consen 315 SLMQDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFV 390 (941)
T ss_pred HHHHHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEE
Confidence 998887555533 478999988888776554433 33 479999999998542 2222223444 89999
Q ss_pred eccchhhhhcC--CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhc--CcEEEEecccCCcccceeEEEEE
Q 007280 303 LDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA--NYIFLAVGRVGSSTDLIVQRVEF 378 (609)
Q Consensus 303 lDEah~~l~~g--f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~--~~~~~~~~~~~~~~~~i~q~~~~ 378 (609)
+||||+..+|+ |++.++++.......+ ...+|.+|||....+++-+-..|. ++..+ ......+++. +.+
T Consensus 391 IDEAHCVSqWgHdFRp~Yk~l~~l~~~~~--~vP~iALTATAT~~v~~DIi~~L~l~~~~~~---~~sfnR~NL~--yeV 463 (941)
T KOG0351|consen 391 IDEAHCVSQWGHDFRPSYKRLGLLRIRFP--GVPFIALTATATERVREDVIRSLGLRNPELF---KSSFNRPNLK--YEV 463 (941)
T ss_pred ecHHHHhhhhcccccHHHHHHHHHHhhCC--CCCeEEeehhccHHHHHHHHHHhCCCCccee---cccCCCCCce--EEE
Confidence 99999999998 9999998876654432 278999999998887776655554 33322 2222333443 334
Q ss_pred EeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEE
Q 007280 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPIL 458 (609)
Q Consensus 379 ~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~IL 458 (609)
..+..+. .+..++..... ......+||||.++++|+.++..|...++.+..||++|+..+|+.+.+.|..++++|+
T Consensus 464 ~~k~~~~-~~~~~~~~~~~---~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~Vi 539 (941)
T KOG0351|consen 464 SPKTDKD-ALLDILEESKL---RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVI 539 (941)
T ss_pred EeccCcc-chHHHHHHhhh---cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEE
Confidence 3333222 22222222221 1236779999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHH
Q 007280 459 VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTE 521 (609)
Q Consensus 459 VaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~ 521 (609)
|||=++++|||.|+|+.||||.+|.+++.|+|-+|||||.|....|++|+...|...+..++.
T Consensus 540 vATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 540 VATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred EEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887766665543
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=317.38 Aligned_cols=338 Identities=23% Similarity=0.308 Sum_probs=261.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcC
Q 007280 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (609)
Q Consensus 152 l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 231 (609)
....+..++...+...|+++|.+|+..+.+++|+||+.+||||||.+|++||+.++++.... ++|+|.|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-----------~AL~lYP 123 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-----------RALLLYP 123 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-----------cEEEEec
Confidence 44556778888888999999999999999999999999999999999999999999987643 3899999
Q ss_pred cHHHHHHHHHHHHHhhccCC--eEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc----cccccceEEEEecc
Q 007280 232 TRELSSQIHVEAKKFSYQTG--VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA----RVSLQMIRYLALDE 305 (609)
Q Consensus 232 tr~La~Qi~~~~~~~~~~~~--i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~----~~~l~~i~~lVlDE 305 (609)
|++||+.+.++++++....+ +++..+.|.+...+....+...++||++||.+|..++.+. ...+++++||||||
T Consensus 124 tnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDE 203 (851)
T COG1205 124 TNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDE 203 (851)
T ss_pred hhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEec
Confidence 99999999999999987777 7777777777766665677888999999999998866543 23577899999999
Q ss_pred chhhhhcCCHHHHHHHH----HHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEe-
Q 007280 306 ADRMLDMGFEPQIRKIV----QQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH- 380 (609)
Q Consensus 306 ah~~l~~gf~~~i~~i~----~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~- 380 (609)
+|-.-. -|...+..++ ..+... ....|+|+.|||+.+. .+++..+........+.............. ..+
T Consensus 204 lHtYrG-v~GS~vA~llRRL~~~~~~~-~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~-~~p~ 279 (851)
T COG1205 204 LHTYRG-VQGSEVALLLRRLLRRLRRY-GSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFVR-REPP 279 (851)
T ss_pred ceeccc-cchhHHHHHHHHHHHHHhcc-CCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEEE-eCCc
Confidence 996422 2455444444 433332 3578999999998654 456666665554443433333333222211 111
Q ss_pred --------ccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHH----HHHHhCC----CCcEEecCccCHHHHH
Q 007280 381 --------ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALE----HWLYMNG----FPATTIHGDRTQQERE 444 (609)
Q Consensus 381 --------~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~----~~L~~~~----~~~~~ihg~~~~~~R~ 444 (609)
...+...+..++...... ..++|+|+.+++.++.+. ..+...+ ..+..+++.+...+|.
T Consensus 280 ~~~~~~~~r~s~~~~~~~~~~~~~~~-----~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~ 354 (851)
T COG1205 280 IRELAESIRRSALAELATLAALLVRN-----GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERR 354 (851)
T ss_pred chhhhhhcccchHHHHHHHHHHHHHc-----CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHH
Confidence 113333333344433333 778999999999999986 3444444 5678899999999999
Q ss_pred HHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCC-CHHHHHHHhhhcccCCCCceEEEEEc
Q 007280 445 LALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPN-DIDDYVHRIGRTGRAGKSGLATAFFN 509 (609)
Q Consensus 445 ~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~-s~~~y~QriGRagR~g~~G~~~~f~~ 509 (609)
++...|+.|+..++++|+.++-|+||-+++.||.+..|. ++.++.||.||+||.++.+..+....
T Consensus 355 ~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 355 RIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred HHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 999999999999999999999999999999999999999 89999999999999987776666655
No 77
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.4e-33 Score=325.52 Aligned_cols=314 Identities=19% Similarity=0.247 Sum_probs=220.8
Q ss_pred CCCCCCCHHHH---HHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHH
Q 007280 163 CKYVKPTPVQR---HAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (609)
Q Consensus 163 ~~~~~pt~iQ~---~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi 239 (609)
..|....|+.+ +.+..+.+++.+||+|+||||||+ ++|.+.. ..... ....++|+.|.|.-|..+
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~ll--e~~~~--------~~~~I~~tQPRRlAA~sv 127 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICL--ELGRG--------SHGLIGHTQPRRLAARTV 127 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHH--HcCCC--------CCceEecCCccHHHHHHH
Confidence 35655566644 455666677889999999999999 5676532 22111 112478889999888887
Q ss_pred HHHHHHhhccCCeEEEEEECCc-ChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccch-hhhhcCCHHH
Q 007280 240 HVEAKKFSYQTGVKVVVAYGGA-PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEAD-RMLDMGFEPQ 317 (609)
Q Consensus 240 ~~~~~~~~~~~~i~~~~~~gg~-~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah-~~l~~gf~~~ 317 (609)
++.+.+. .+..+...+|.. ....+ ....+.|+|+|+|+|++.+..+.. +..+++||||||| ++++.+|...
T Consensus 128 A~RvA~e---lg~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~ 200 (1283)
T TIGR01967 128 AQRIAEE---LGTPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLG 200 (1283)
T ss_pred HHHHHHH---hCCCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHH
Confidence 6555443 234443444432 11111 134578999999999999887654 8999999999999 6999888765
Q ss_pred -HHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEec------cchHHHHHH
Q 007280 318 -IRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE------SDKRSHLMD 390 (609)
Q Consensus 318 -i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~------~~k~~~l~~ 390 (609)
++.++.. .++.|+|+||||++. ..+.+.|...++....++.. .+...+..... ..+...+++
T Consensus 201 lLk~il~~-----rpdLKlIlmSATld~--~~fa~~F~~apvI~V~Gr~~----PVev~Y~~~~~~~~~~~~~~~~~i~~ 269 (1283)
T TIGR01967 201 YLKQLLPR-----RPDLKIIITSATIDP--ERFSRHFNNAPIIEVSGRTY----PVEVRYRPLVEEQEDDDLDQLEAILD 269 (1283)
T ss_pred HHHHHHhh-----CCCCeEEEEeCCcCH--HHHHHHhcCCCEEEECCCcc----cceeEEecccccccchhhhHHHHHHH
Confidence 4555443 246799999999974 46666665555433222211 12222222211 122334444
Q ss_pred HHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCC---CCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccC
Q 007280 391 LLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG---FPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARG 467 (609)
Q Consensus 391 ~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~---~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~G 467 (609)
.+...... ..+.+|||++++++++.+++.|...+ +.+.++||+|++++|.++++.+ +..+|||||+++++|
T Consensus 270 ~I~~l~~~----~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtS 343 (1283)
T TIGR01967 270 AVDELFAE----GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETS 343 (1283)
T ss_pred HHHHHHhh----CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhc
Confidence 45443321 25679999999999999999998764 4578899999999999997765 246899999999999
Q ss_pred CCCCCccEEEEcCCC------------------CCHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 468 LDIPHVAHVVNFDLP------------------NDIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 468 lDip~v~~VI~~d~p------------------~s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
||||+|++||+++++ .|.++|+||.|||||.+ +|.|+.||++++.
T Consensus 344 LTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 344 LTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred cccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 999999999999854 36789999999999996 9999999997654
No 78
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=8.2e-33 Score=300.73 Aligned_cols=344 Identities=20% Similarity=0.261 Sum_probs=247.2
Q ss_pred HHCCCCCCCHHHHHHHhhHh-CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHH
Q 007280 161 RRCKYVKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (609)
Q Consensus 161 ~~~~~~~pt~iQ~~~i~~i~-~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi 239 (609)
.-++|..++.+|+.++|.+. .+.|+|||||||||||..|+|.||..+.++... ........++++|+|+++||..+
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~---~~i~k~~fKiVYIaPmKALa~Em 180 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQ---GDIAKDDFKIVYIAPMKALAAEM 180 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccc---cccccCCceEEEEechHHHHHHH
Confidence 34578899999999999888 578999999999999999999999888762111 11123345699999999999999
Q ss_pred HHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccc----ccccceEEEEeccchhhhhcCCH
Q 007280 240 HVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR----VSLQMIRYLALDEADRMLDMGFE 315 (609)
Q Consensus 240 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~----~~l~~i~~lVlDEah~~l~~gf~ 315 (609)
.+.+.+-...+++.|..++|++...+.. -..|+|||+||+++ |.+.+.. ..++.+++|||||+|.+-| ...
T Consensus 181 ~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RG 255 (1230)
T KOG0952|consen 181 VDKFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRG 255 (1230)
T ss_pred HHHHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcC-ccc
Confidence 9888777777899999999998755443 22489999999997 4444432 2367799999999996554 467
Q ss_pred HHHHHHHHHcC---CCCCCCceEEEEEeeccHHHHHHHHHhhcC-cEEEEecccCCcccceeEEEEEEecc---chHH--
Q 007280 316 PQIRKIVQQMD---MPPPGMRQTMLFSATFPKEIQRLASDFLAN-YIFLAVGRVGSSTDLIVQRVEFVHES---DKRS-- 386 (609)
Q Consensus 316 ~~i~~i~~~l~---~~~~~~~q~il~SAT~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~i~q~~~~~~~~---~k~~-- 386 (609)
+.++.|+.... .......++|.+|||+|+- .+++..+-.+ +.-+......-..--+.|.+.-+... .+..
T Consensus 256 pvlEtiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~ 334 (1230)
T KOG0952|consen 256 PVLETIVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNI 334 (1230)
T ss_pred chHHHHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhH
Confidence 88888776653 1123457899999999863 4555543333 23332222222233355555554443 1111
Q ss_pred --HHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC-----------------------CCCcEEecCccCHH
Q 007280 387 --HLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-----------------------GFPATTIHGDRTQQ 441 (609)
Q Consensus 387 --~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~-----------------------~~~~~~ihg~~~~~ 441 (609)
..++.+.+... .+.+++|||.++..+...++.|.+. .......|.+|..+
T Consensus 335 d~~~~~kv~e~~~-----~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~ 409 (1230)
T KOG0952|consen 335 DEVCYDKVVEFLQ-----EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRS 409 (1230)
T ss_pred HHHHHHHHHHHHH-----cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchh
Confidence 12222222222 2678999999999998888888642 12334679999999
Q ss_pred HHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEE----EcCCCC------CHHHHHHHhhhcccC--CCCceEEEEEc
Q 007280 442 ERELALRSFKSGKTPILVATDVAARGLDIPHVAHVV----NFDLPN------DIDDYVHRIGRTGRA--GKSGLATAFFN 509 (609)
Q Consensus 442 ~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI----~~d~p~------s~~~y~QriGRagR~--g~~G~~~~f~~ 509 (609)
+|..+.+.|+.|.++||+||..++.|+|+|+-.++| .||... .+-+.+|..|||||- ...|.++++.+
T Consensus 410 DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt 489 (1230)
T KOG0952|consen 410 DRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITT 489 (1230)
T ss_pred hHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEec
Confidence 999999999999999999999999999999866666 355433 577889999999994 46899999887
Q ss_pred CCChhhHHH
Q 007280 510 ENNMSLARP 518 (609)
Q Consensus 510 ~~~~~~~~~ 518 (609)
.+-......
T Consensus 490 ~dkl~~Y~s 498 (1230)
T KOG0952|consen 490 RDKLDHYES 498 (1230)
T ss_pred ccHHHHHHH
Confidence 665544433
No 79
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.3e-33 Score=305.72 Aligned_cols=320 Identities=16% Similarity=0.184 Sum_probs=215.1
Q ss_pred CCCCHHHHHHHhhHhC-C--CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIG-G--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~-~--~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
..|+|+|++++..+.. + +..++++|||+|||++.+..+ ..+. + .+|||||+.+|+.||.++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l~-----k----------~tLILvps~~Lv~QW~~e 317 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTVK-----K----------SCLVLCTSAVSVEQWKQQ 317 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHhC-----C----------CEEEEeCcHHHHHHHHHH
Confidence 4689999999988773 3 468999999999999876543 3321 1 189999999999999999
Q ss_pred HHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc--------cccccceEEEEeccchhhhhcCC
Q 007280 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA--------RVSLQMIRYLALDEADRMLDMGF 314 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~--------~~~l~~i~~lVlDEah~~l~~gf 314 (609)
+.+|.......+..++|+... .......|+|+|+..+.....+. .+.-..+++||+||||++..
T Consensus 318 f~~~~~l~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--- 389 (732)
T TIGR00603 318 FKMWSTIDDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--- 389 (732)
T ss_pred HHHhcCCCCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---
Confidence 999865444556665554321 11123689999999875332111 12224688999999999753
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHH--HHHHhhcCcEEEEecccCCccc----ceeEEEEEEe--------
Q 007280 315 EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR--LASDFLANYIFLAVGRVGSSTD----LIVQRVEFVH-------- 380 (609)
Q Consensus 315 ~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~--l~~~~l~~~~~~~~~~~~~~~~----~i~q~~~~~~-------- 380 (609)
+.++.++..+. ....++||||+..+-.. .+. ++..++.+.......... .+......++
T Consensus 390 -~~fr~il~~l~-----a~~RLGLTATP~ReD~~~~~L~-~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~ 462 (732)
T TIGR00603 390 -AMFRRVLTIVQ-----AHCKLGLTATLVREDDKITDLN-FLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYRE 462 (732)
T ss_pred -HHHHHHHHhcC-----cCcEEEEeecCcccCCchhhhh-hhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHH
Confidence 55666776652 23479999998532111 111 122232222221111100 0000001111
Q ss_pred ---------------ccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHH
Q 007280 381 ---------------ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 445 (609)
Q Consensus 381 ---------------~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~ 445 (609)
...|...+..++..+. ....++||||.+...++.+++.|. +..|||++++.+|++
T Consensus 463 yl~~~~~~k~~l~~~np~K~~~~~~Li~~he-----~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~ 532 (732)
T TIGR00603 463 YLRENSRKRMLLYVMNPNKFRACQFLIRFHE-----QRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQ 532 (732)
T ss_pred HHHhcchhhhHHhhhChHHHHHHHHHHHHHh-----hcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHH
Confidence 1122222223333221 237789999999999998888772 456999999999999
Q ss_pred HHHhhhcC-CCcEEEEccccccCCCCCCccEEEEcCCCC-CHHHHHHHhhhcccCCCCceE-------EEEEcCCC--hh
Q 007280 446 ALRSFKSG-KTPILVATDVAARGLDIPHVAHVVNFDLPN-DIDDYVHRIGRTGRAGKSGLA-------TAFFNENN--MS 514 (609)
Q Consensus 446 ~~~~F~~g-~~~ILVaT~v~~~GlDip~v~~VI~~d~p~-s~~~y~QriGRagR~g~~G~~-------~~f~~~~~--~~ 514 (609)
+++.|+.+ .+++||+|+++.+|||+|++++||+++.|. |..+|+||+||++|.+..|.+ +.|++.+. ..
T Consensus 533 il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~ 612 (732)
T TIGR00603 533 ILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMY 612 (732)
T ss_pred HHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHH
Confidence 99999875 789999999999999999999999999984 999999999999999876665 67777543 44
Q ss_pred hHHHHHHHHHHh
Q 007280 515 LARPLTELMQEA 526 (609)
Q Consensus 515 ~~~~l~~~l~~~ 526 (609)
++..-..+|.+.
T Consensus 613 ~s~~Rq~fl~~q 624 (732)
T TIGR00603 613 YSTKRQRFLVDQ 624 (732)
T ss_pred HHHHHHHHHHHC
Confidence 555555555543
No 80
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.8e-31 Score=299.48 Aligned_cols=317 Identities=22% Similarity=0.243 Sum_probs=222.6
Q ss_pred CCCHHHHHHHhhHhC---CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISIG---GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~---~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~ 243 (609)
.||+.|+++++.+.+ .++++++++||||||.+|+.++...+... ..+|||+||++|+.|+.+.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-------------~~vLvLvPt~~L~~Q~~~~l 210 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-------------KQALVLVPEIALTPQMLARF 210 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC-------------CeEEEEeCcHHHHHHHHHHH
Confidence 589999999999987 37899999999999999988776655432 23999999999999999988
Q ss_pred HHhhccCCeEEEEEECCcChHHHHHHH---h-cCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCC---HH
Q 007280 244 KKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGF---EP 316 (609)
Q Consensus 244 ~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf---~~ 316 (609)
++. ++.++.+++++.+..++...+ . ..++|+|+|++.+. ..++++++||+||+|....... .-
T Consensus 211 ~~~---fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 211 RAR---FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred HHH---hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCC
Confidence 875 357888999998766554433 2 35799999998874 3478899999999997553221 11
Q ss_pred HHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccc---------hHHH
Q 007280 317 QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD---------KRSH 387 (609)
Q Consensus 317 ~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~---------k~~~ 387 (609)
..+.+...... ....++|++|||++.+....+. -..+..+............ .+..++... -...
T Consensus 281 ~~r~va~~ra~--~~~~~~il~SATps~~s~~~~~--~g~~~~~~l~~r~~~~~~p--~v~~id~~~~~~~~~~~~ls~~ 354 (679)
T PRK05580 281 HARDLAVVRAK--LENIPVVLGSATPSLESLANAQ--QGRYRLLRLTKRAGGARLP--EVEIIDMRELLRGENGSFLSPP 354 (679)
T ss_pred cHHHHHHHHhh--ccCCCEEEEcCCCCHHHHHHHh--ccceeEEEeccccccCCCC--eEEEEechhhhhhcccCCCCHH
Confidence 22333221111 3457899999998766554443 1233333332221111111 122222111 1244
Q ss_pred HHHHHHHHHhcCcCCCCceEEEEecch-----------------------------------------------------
Q 007280 388 LMDLLHAQVANGVHGKQALTLVFVETK----------------------------------------------------- 414 (609)
Q Consensus 388 l~~~l~~~~~~~~~~~~~k~lVF~~t~----------------------------------------------------- 414 (609)
+++.+.+.... +.++|||++++
T Consensus 355 l~~~i~~~l~~-----g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~ 429 (679)
T PRK05580 355 LLEAIKQRLER-----GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGS 429 (679)
T ss_pred HHHHHHHHHHc-----CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcC
Confidence 66666665533 55788888752
Q ss_pred -------hhHHHHHHHHHhC--CCCcEEecCccCH--HHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEc--CC
Q 007280 415 -------KGADALEHWLYMN--GFPATTIHGDRTQ--QERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNF--DL 481 (609)
Q Consensus 415 -------~~~~~l~~~L~~~--~~~~~~ihg~~~~--~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~--d~ 481 (609)
..++.+++.|... +.++..+|+++++ .++++++++|++|+.+|||+|+++++|+|+|+|++|+.+ |.
T Consensus 430 ~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~ 509 (679)
T PRK05580 430 TDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADL 509 (679)
T ss_pred CeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCch
Confidence 1456777777765 7789999999874 679999999999999999999999999999999998644 54
Q ss_pred CCC----------HHHHHHHhhhcccCCCCceEEEEEcCCChhhHH
Q 007280 482 PND----------IDDYVHRIGRTGRAGKSGLATAFFNENNMSLAR 517 (609)
Q Consensus 482 p~s----------~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~ 517 (609)
+.+ ...|+|++||+||.++.|.+++.....+...+.
T Consensus 510 ~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 510 GLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred hccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHH
Confidence 433 367999999999999999999877655443333
No 81
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=5.3e-32 Score=307.64 Aligned_cols=333 Identities=18% Similarity=0.190 Sum_probs=212.0
Q ss_pred CCCHHHHHHHhhHhCC--CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~--~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
.|.|+|.+++..++.. ..+|+..++|.|||..+.+. +..++..+... .+|||||+ .|..||..++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAgli-l~~l~~~g~~~----------rvLIVvP~-sL~~QW~~El~ 219 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMI-IHQQLLTGRAE----------RVLILVPE-TLQHQWLVEML 219 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHH-HHHHHHcCCCC----------cEEEEcCH-HHHHHHHHHHH
Confidence 5899999998776643 46899999999999987664 44444333222 29999998 89999999885
Q ss_pred HhhccCCeEEEEEECCcChHHHHH---HHhcCCCEEEeChHHHHHHHHc-ccccccceEEEEeccchhhhhcC-CHHHHH
Q 007280 245 KFSYQTGVKVVVAYGGAPINQQLR---ELERGVDILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMG-FEPQIR 319 (609)
Q Consensus 245 ~~~~~~~i~~~~~~gg~~~~~~~~---~l~~~~~IlV~Tpg~L~~~l~~-~~~~l~~i~~lVlDEah~~l~~g-f~~~i~ 319 (609)
+.. ++...++.+.. ...... ......+++|+|.+.|...-.. ..+.-..+++|||||||++.... -.....
T Consensus 220 ~kF---~l~~~i~~~~~-~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 220 RRF---NLRFSLFDEER-YAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred HHh---CCCeEEEcCcc-hhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 432 34444332221 111000 0111368999999877642111 11223468999999999986211 111112
Q ss_pred HHHHHcCCCCCCCceEEEEEeeccH-H-------------------------------HHHHHHHh--------------
Q 007280 320 KIVQQMDMPPPGMRQTMLFSATFPK-E-------------------------------IQRLASDF-------------- 353 (609)
Q Consensus 320 ~i~~~l~~~~~~~~q~il~SAT~~~-~-------------------------------~~~l~~~~-------------- 353 (609)
..+..+. .....++++|||+-. . +..++..+
T Consensus 296 ~~v~~La---~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l 372 (956)
T PRK04914 296 QVVEQLA---EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNAL 372 (956)
T ss_pred HHHHHHh---hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 3333331 123468999999731 0 00000101
Q ss_pred ---hcC-----------------------------------cEEEEeccc--CCcccceeEEEEE---------------
Q 007280 354 ---LAN-----------------------------------YIFLAVGRV--GSSTDLIVQRVEF--------------- 378 (609)
Q Consensus 354 ---l~~-----------------------------------~~~~~~~~~--~~~~~~i~q~~~~--------------- 378 (609)
+.+ .+.+...+. ........+.+.+
T Consensus 373 ~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~ 452 (956)
T PRK04914 373 GELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLE 452 (956)
T ss_pred HHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHH
Confidence 000 000000000 0000001111100
Q ss_pred ----------------------EeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHH-HhCCCCcEEec
Q 007280 379 ----------------------VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL-YMNGFPATTIH 435 (609)
Q Consensus 379 ----------------------~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L-~~~~~~~~~ih 435 (609)
.....|...|+++|+. ....|+||||+++..++.|++.| ...++++..||
T Consensus 453 ~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~-------~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ih 525 (956)
T PRK04914 453 ARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKS-------HRSEKVLVICAKAATALQLEQALREREGIRAAVFH 525 (956)
T ss_pred HHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHh-------cCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEE
Confidence 0001122223333322 12678999999999999999999 46699999999
Q ss_pred CccCHHHHHHHHHhhhcC--CCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 436 GDRTQQERELALRSFKSG--KTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 436 g~~~~~~R~~~~~~F~~g--~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
|+|++.+|+++++.|+++ ..+|||||+++++|+|++.+++|||||+|+|++.|+|||||++|.|+++.+.+++.....
T Consensus 526 G~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 526 EGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred CCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCC
Confidence 999999999999999984 589999999999999999999999999999999999999999999999988888765554
Q ss_pred hhHHHHHHHHHH
Q 007280 514 SLARPLTELMQE 525 (609)
Q Consensus 514 ~~~~~l~~~l~~ 525 (609)
.....|.+++.+
T Consensus 606 t~~e~i~~~~~~ 617 (956)
T PRK04914 606 TAQERLFRWYHE 617 (956)
T ss_pred CHHHHHHHHHhh
Confidence 445555555544
No 82
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=8.9e-31 Score=278.60 Aligned_cols=331 Identities=21% Similarity=0.300 Sum_probs=252.4
Q ss_pred HHCCCCCCCHHHHHHHhhHhCC------CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHH
Q 007280 161 RRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE 234 (609)
Q Consensus 161 ~~~~~~~pt~iQ~~~i~~i~~~------~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 234 (609)
..+.| +||.-|+++|..|... .+-++++..|||||++++++++..+-... ++.+++||-.
T Consensus 257 ~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~-------------Q~ALMAPTEI 322 (677)
T COG1200 257 AALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY-------------QAALMAPTEI 322 (677)
T ss_pred HhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC-------------eeEEeccHHH
Confidence 44455 7999999999988753 34689999999999999999987765432 3999999999
Q ss_pred HHHHHHHHHHHhhccCCeEEEEEECCcChHHH---HHHHhcC-CCEEEeChHHHHHHHHcccccccceEEEEeccchhhh
Q 007280 235 LSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQ---LRELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADRML 310 (609)
Q Consensus 235 La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~~-~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l 310 (609)
||.|.++.+.++....++++..+.|...-... ...+..+ .+|+|+| ..|....+.++++.++|+||-||
T Consensus 323 LA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQHR-- 395 (677)
T COG1200 323 LAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQHR-- 395 (677)
T ss_pred HHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEecccc--
Confidence 99999999999999999999999998754443 3444455 8999999 44455567899999999999999
Q ss_pred hcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHH
Q 007280 311 DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMD 390 (609)
Q Consensus 311 ~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~ 390 (609)
|.-.-+..+..... ....+++||||+=+. .++-....+.-.-.++....-...|.. .+-...+...+++
T Consensus 396 ---FGV~QR~~L~~KG~---~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP~GRkpI~T---~~i~~~~~~~v~e 464 (677)
T COG1200 396 ---FGVHQRLALREKGE---QNPHVLVMTATPIPR--TLALTAFGDLDVSIIDELPPGRKPITT---VVIPHERRPEVYE 464 (677)
T ss_pred ---ccHHHHHHHHHhCC---CCCcEEEEeCCCchH--HHHHHHhccccchhhccCCCCCCceEE---EEeccccHHHHHH
Confidence 66666666665522 145799999997442 333333343322222222222222322 2233466677788
Q ss_pred HHHHHHhcCcCCCCceEEEEecchhhHH--------HHHHHHHhC--CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEE
Q 007280 391 LLHAQVANGVHGKQALTLVFVETKKGAD--------ALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKTPILVA 460 (609)
Q Consensus 391 ~l~~~~~~~~~~~~~k~lVF~~t~~~~~--------~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVa 460 (609)
.+...+.. +.++.|.|+-+++.+ .+++.|... ++.+..+||.|+..++++++++|++|+++||||
T Consensus 465 ~i~~ei~~-----GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVa 539 (677)
T COG1200 465 RIREEIAK-----GRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVA 539 (677)
T ss_pred HHHHHHHc-----CCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEE
Confidence 88777654 777899998876654 455556532 567889999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEcCCCC-CHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcc
Q 007280 461 TDVAARGLDIPHVAHVVNFDLPN-DIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQ 528 (609)
Q Consensus 461 T~v~~~GlDip~v~~VI~~d~p~-s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q 528 (609)
|.|.+.|||+|+.++.|..+.-. -.++..|-.||+||....++|++++.+...+..+.-.++|.+...
T Consensus 540 TTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~D 608 (677)
T COG1200 540 TTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTD 608 (677)
T ss_pred eeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCC
Confidence 99999999999999999888754 678999999999999999999999998876666666667666543
No 83
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.98 E-value=9.6e-31 Score=256.17 Aligned_cols=342 Identities=17% Similarity=0.306 Sum_probs=257.0
Q ss_pred CCCCHHHHHHHH-HCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEE
Q 007280 150 IDLGEALNLNIR-RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI 228 (609)
Q Consensus 150 ~~l~~~l~~~i~-~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Li 228 (609)
++.+.+..+-++ .+..++++|.|..+|+..+.+.|+++..|||.||+++|.+|+|.. + -++||
T Consensus 76 fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---d-------------g~alv 139 (695)
T KOG0353|consen 76 FPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---D-------------GFALV 139 (695)
T ss_pred CCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---C-------------CceEe
Confidence 344455444443 346778999999999999999999999999999999999999732 2 34999
Q ss_pred EcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHH---H---hcCCCEEEeChHHHHH---HHHc--ccccccc
Q 007280 229 LAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---L---ERGVDILVATPGRLVD---LLER--ARVSLQM 297 (609)
Q Consensus 229 l~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l---~~~~~IlV~Tpg~L~~---~l~~--~~~~l~~ 297 (609)
+||...|+....-.++.+ ++....+....+..+..+- + .....+++.||+.+.. ++.+ ..+....
T Consensus 140 i~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~ 215 (695)
T KOG0353|consen 140 ICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGF 215 (695)
T ss_pred echhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcce
Confidence 999999998887777775 6666665555554333221 1 2246899999998743 2222 1234567
Q ss_pred eEEEEeccchhhhhcC--CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEE
Q 007280 298 IRYLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQR 375 (609)
Q Consensus 298 i~~lVlDEah~~l~~g--f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~ 375 (609)
+.+|.+||+|+..+|| |++++..+--.-+. -+...+|.++||..+.+..-+.+++--...+.. +.+...+++.
T Consensus 216 ~~~iaidevhccsqwghdfr~dy~~l~ilkrq--f~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~-- 290 (695)
T KOG0353|consen 216 FKLIAIDEVHCCSQWGHDFRPDYKALGILKRQ--FKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLK-- 290 (695)
T ss_pred eEEEeecceeehhhhCcccCcchHHHHHHHHh--CCCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCce--
Confidence 8999999999999988 88877654322211 234579999999988887777776643322222 2223333443
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCC
Q 007280 376 VEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT 455 (609)
Q Consensus 376 ~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~ 455 (609)
|++.......+..++-+...+...- .....||||-+.+.|+.++..|+..|+.+..+|..|.+++|.-+-+.|..|++
T Consensus 291 yev~qkp~n~dd~~edi~k~i~~~f--~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~ei 368 (695)
T KOG0353|consen 291 YEVRQKPGNEDDCIEDIAKLIKGDF--AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEI 368 (695)
T ss_pred eEeeeCCCChHHHHHHHHHHhcccc--CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccce
Confidence 4455544444455555544443322 35567999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCccEEEEcCCCCCHHHHHH-------------------------------------------Hh
Q 007280 456 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVH-------------------------------------------RI 492 (609)
Q Consensus 456 ~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~Q-------------------------------------------ri 492 (609)
.|+|||-.+..|||-|+|++|||..+|.++++|.| -.
T Consensus 369 qvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekes 448 (695)
T KOG0353|consen 369 QVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKES 448 (695)
T ss_pred EEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhc
Confidence 99999999999999999999999999999999999 67
Q ss_pred hhcccCCCCceEEEEEcCCChhhHHH
Q 007280 493 GRTGRAGKSGLATAFFNENNMSLARP 518 (609)
Q Consensus 493 GRagR~g~~G~~~~f~~~~~~~~~~~ 518 (609)
||+||.+.+..|+++|.-.|.-....
T Consensus 449 gragrd~~~a~cilyy~~~difk~ss 474 (695)
T KOG0353|consen 449 GRAGRDDMKADCILYYGFADIFKISS 474 (695)
T ss_pred cccccCCCcccEEEEechHHHHhHHH
Confidence 99999999999999998665543333
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=1.6e-29 Score=285.92 Aligned_cols=313 Identities=18% Similarity=0.220 Sum_probs=204.6
Q ss_pred CCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 165 ~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
...|+|+|+.+........-+|+.||||+|||.++++.+. .++..... ..++|..||+++++|++++++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~-~l~~~~~~----------~gi~~aLPT~Atan~m~~Rl~ 352 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAW-RLIDQGLA----------DSIIFALPTQATANAMLSRLE 352 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHH-HHHHhCCC----------CeEEEECcHHHHHHHHHHHHH
Confidence 4589999998865544456689999999999999877554 44433211 139999999999999999988
Q ss_pred HhhccC--CeEEEEEECCcChHHHHH--------------------HH----hc---CCCEEEeChHHHHHHHHcc-ccc
Q 007280 245 KFSYQT--GVKVVVAYGGAPINQQLR--------------------EL----ER---GVDILVATPGRLVDLLERA-RVS 294 (609)
Q Consensus 245 ~~~~~~--~i~~~~~~gg~~~~~~~~--------------------~l----~~---~~~IlV~Tpg~L~~~l~~~-~~~ 294 (609)
++.... ...+.+++|......... .+ .+ -.+|+|+|+..++..+... ...
T Consensus 353 ~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~ 432 (878)
T PRK09694 353 ALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRF 432 (878)
T ss_pred HHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHH
Confidence 754321 345677777654221110 11 11 1689999999887544332 122
Q ss_pred ccce----EEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHH-HHHhhcC--------cEEEE
Q 007280 295 LQMI----RYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRL-ASDFLAN--------YIFLA 361 (609)
Q Consensus 295 l~~i----~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l-~~~~l~~--------~~~~~ 361 (609)
+..+ ++|||||+|-+ +......+..+++.+. .....+|+||||+|..+.+. .+.+-.. |..+.
T Consensus 433 lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~---~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt 508 (878)
T PRK09694 433 IRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQA---QAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLIT 508 (878)
T ss_pred HHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHH---hcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccc
Confidence 2222 58999999974 3323344555555442 22356999999999877543 3322111 11110
Q ss_pred ecc--------cCCccc--ceeEEEEE--E--eccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC
Q 007280 362 VGR--------VGSSTD--LIVQRVEF--V--HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (609)
Q Consensus 362 ~~~--------~~~~~~--~i~q~~~~--~--~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~ 427 (609)
... ...... .....+.+ . ........+++.+..... ...++||||||++.++.+++.|+..
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~-----~g~~vLVf~NTV~~Aq~ly~~L~~~ 583 (878)
T PRK09694 509 WRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN-----AGAQVCLICNLVDDAQKLYQRLKEL 583 (878)
T ss_pred ccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh-----cCCEEEEEECCHHHHHHHHHHHHhh
Confidence 000 000000 01111111 1 111122344444444332 2667999999999999999999876
Q ss_pred C---CCcEEecCccCHHHH----HHHHHhh-hcCC---CcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcc
Q 007280 428 G---FPATTIHGDRTQQER----ELALRSF-KSGK---TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG 496 (609)
Q Consensus 428 ~---~~~~~ihg~~~~~~R----~~~~~~F-~~g~---~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRag 496 (609)
. .++..+|+.+++.+| +++++.| ++++ ..|||||+|+++|||| ++++||....| ++.++||+||++
T Consensus 584 ~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~ 660 (878)
T PRK09694 584 NNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLH 660 (878)
T ss_pred CCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccC
Confidence 4 678999999999999 4678888 6666 3699999999999999 68999998888 789999999999
Q ss_pred cCCC
Q 007280 497 RAGK 500 (609)
Q Consensus 497 R~g~ 500 (609)
|.+.
T Consensus 661 R~~~ 664 (878)
T PRK09694 661 RHHR 664 (878)
T ss_pred CCCC
Confidence 9875
No 85
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=3.2e-30 Score=249.77 Aligned_cols=202 Identities=53% Similarity=0.807 Sum_probs=183.4
Q ss_pred cccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceE
Q 007280 147 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLA 226 (609)
Q Consensus 147 f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~ 226 (609)
|+++.+++.+.+.+.+++++.|+++|+++++.+++++++++++|||+|||++|++|++..+..... ..++++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~--------~~~~~v 72 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK--------KDGPQA 72 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc--------cCCceE
Confidence 678899999999999999999999999999999999999999999999999999999998876521 123569
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccc
Q 007280 227 LILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEA 306 (609)
Q Consensus 227 Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEa 306 (609)
||++||++|+.|+...++++....++++..++|+....+....+..+++|+|+||++|.+++++....+.++++||+||+
T Consensus 73 iii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~ 152 (203)
T cd00268 73 LILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152 (203)
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeCh
Confidence 99999999999999999999887889999999999888777777778999999999999999888788899999999999
Q ss_pred hhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEE
Q 007280 307 DRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFL 360 (609)
Q Consensus 307 h~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~ 360 (609)
|.+.+.+|...+..++..+ +...|++++|||+++.+..++..++.+++++
T Consensus 153 h~~~~~~~~~~~~~~~~~l----~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 153 DRMLDMGFEDQIREILKLL----PKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHhhccChHHHHHHHHHhC----CcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999999999999999988 4578999999999999999999999988775
No 86
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=6.6e-29 Score=275.15 Aligned_cols=321 Identities=17% Similarity=0.187 Sum_probs=233.7
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.|+++|--.--++. +.-|+.++||+|||++|++|++..++... .++||+||++||.|.++++..+
T Consensus 82 ~~ydvQliGg~~Lh--~G~Iaem~TGeGKTL~a~Lpa~~~al~G~-------------~V~VvTpn~yLA~qd~e~m~~l 146 (896)
T PRK13104 82 RHFDVQLIGGMVLH--EGNIAEMRTGEGKTLVATLPAYLNAISGR-------------GVHIVTVNDYLAKRDSQWMKPI 146 (896)
T ss_pred CcchHHHhhhhhhc--cCccccccCCCCchHHHHHHHHHHHhcCC-------------CEEEEcCCHHHHHHHHHHHHHH
Confidence 56666655444443 44689999999999999999998776432 1899999999999999999999
Q ss_pred hccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHcc-cccc-----cceEEEEeccchhhh-hcC-----
Q 007280 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA-RVSL-----QMIRYLALDEADRML-DMG----- 313 (609)
Q Consensus 247 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~-~~~l-----~~i~~lVlDEah~~l-~~g----- 313 (609)
...+++++.+++|+.+..++...+ .+||+|+||++| .|+|... .+++ ..+.++||||||+|| |..
T Consensus 147 ~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLI 224 (896)
T PRK13104 147 YEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLI 224 (896)
T ss_pred hcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCcee
Confidence 999999999999998877665544 589999999999 9998876 3334 589999999999966 210
Q ss_pred ----------CHHHHHHHHHHcCCC-----------CCCC----------------------------------------
Q 007280 314 ----------FEPQIRKIVQQMDMP-----------PPGM---------------------------------------- 332 (609)
Q Consensus 314 ----------f~~~i~~i~~~l~~~-----------~~~~---------------------------------------- 332 (609)
....+..++..+... ....
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~ 304 (896)
T PRK13104 225 ISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHH 304 (896)
T ss_pred eeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHH
Confidence 011111111111100 0000
Q ss_pred ---------------------------------------------------------------------------ceEEE
Q 007280 333 ---------------------------------------------------------------------------RQTML 337 (609)
Q Consensus 333 ---------------------------------------------------------------------------~q~il 337 (609)
.++..
T Consensus 305 i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsG 384 (896)
T PRK13104 305 VNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSG 384 (896)
T ss_pred HHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhcc
Confidence 02344
Q ss_pred EEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhH
Q 007280 338 FSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGA 417 (609)
Q Consensus 338 ~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~ 417 (609)
||.|...+..++...|--+.+.+ ...-.....-.....+.....|...+++.+..... ...++||||+|++.+
T Consensus 385 MTGTa~te~~Ef~~iY~l~Vv~I--Ptnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~-----~g~PVLVgt~Sie~s 457 (896)
T PRK13104 385 MTGTADTEAYEFQQIYNLEVVVI--PTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGV-----RKQPVLVGTVSIEAS 457 (896)
T ss_pred CCCCChhHHHHHHHHhCCCEEEC--CCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCCEEEEeCcHHHH
Confidence 55555444444444332222222 11111111112223455666777777777765432 488899999999999
Q ss_pred HHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCc------------------------
Q 007280 418 DALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV------------------------ 473 (609)
Q Consensus 418 ~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v------------------------ 473 (609)
+.|+++|...++++..+|+.+.+.+++.+.+.|+.|. |+|||++|+||+||.=-
T Consensus 458 E~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~ 535 (896)
T PRK13104 458 EFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKK 535 (896)
T ss_pred HHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999999999999999995 99999999999999621
Q ss_pred --------------cEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 474 --------------AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 474 --------------~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
=|||--..+.|..--.|-.||+||.|.+|.+-+|++-+|.
T Consensus 536 ~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 536 EWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 2688888888988999999999999999999999987664
No 87
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.1e-28 Score=272.64 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=130.5
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---CHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCC
Q 007280 148 AEIDLGEALNLNIR-----RCKYVKP---TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219 (609)
Q Consensus 148 ~~~~l~~~l~~~i~-----~~~~~~p---t~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~ 219 (609)
+.+.+.+++.+.+. .+||..| ||+|.++|+.++.++++|++++||+|||++|++|++..++...
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~-------- 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK-------- 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC--------
Confidence 45677888877776 6799988 9999999999999999999999999999999999998886432
Q ss_pred ccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHccccccc--
Q 007280 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERARVSLQ-- 296 (609)
Q Consensus 220 ~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~~~~l~-- 296 (609)
.++||+||++||.|+++++..+...+++++.+++||.+..++...+ .|+|+|+||++| +|+|....+.++
T Consensus 137 -----~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~ 209 (970)
T PRK12899 137 -----PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKE 209 (970)
T ss_pred -----CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHH
Confidence 1889999999999999999999999999999999999988887665 599999999999 999988755555
Q ss_pred -----ceEEEEeccchhhh
Q 007280 297 -----MIRYLALDEADRML 310 (609)
Q Consensus 297 -----~i~~lVlDEah~~l 310 (609)
.+.++||||||.||
T Consensus 210 ~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 210 EQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HhhcccccEEEEechhhhh
Confidence 45899999999987
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=4.1e-29 Score=271.10 Aligned_cols=290 Identities=21% Similarity=0.228 Sum_probs=198.8
Q ss_pred eeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHH
Q 007280 186 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQ 265 (609)
Q Consensus 186 ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~ 265 (609)
++.++||||||.+|+..+. .++..+ ..+|||+|+++|+.|+++.+++. ++.++.+++++.+..+
T Consensus 1 LL~g~TGsGKT~v~l~~i~-~~l~~g------------~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~e 64 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIE-KVLALG------------KSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSE 64 (505)
T ss_pred CccCCCCCCHHHHHHHHHH-HHHHcC------------CeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHH
Confidence 5789999999999876543 343322 13999999999999999988875 3567888888887655
Q ss_pred HHHHH---hc-CCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcC---CH---HHHHHHHHHcCCCCCCCceE
Q 007280 266 QLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG---FE---PQIRKIVQQMDMPPPGMRQT 335 (609)
Q Consensus 266 ~~~~l---~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~g---f~---~~i~~i~~~l~~~~~~~~q~ 335 (609)
....+ .. .++|+|+|+..|. ..+.++++|||||+|.....+ .. .++..+... ....++
T Consensus 65 r~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-----~~~~~v 132 (505)
T TIGR00595 65 KLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-----KFNCPV 132 (505)
T ss_pred HHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-----hcCCCE
Confidence 44333 22 4799999998764 247889999999999865322 11 122223332 235689
Q ss_pred EEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccc----hHHHHHHHHHHHHhcCcCCCCceEEEEe
Q 007280 336 MLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD----KRSHLMDLLHAQVANGVHGKQALTLVFV 411 (609)
Q Consensus 336 il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~----k~~~l~~~l~~~~~~~~~~~~~k~lVF~ 411 (609)
|++|||++.+....+. ...+..+...............+..+.... -...|++.+.+.... +.++|||+
T Consensus 133 il~SATPsles~~~~~--~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~-----g~qvLvfl 205 (505)
T TIGR00595 133 VLGSATPSLESYHNAK--QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAA-----GEQSILFL 205 (505)
T ss_pred EEEeCCCCHHHHHHHh--cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHc-----CCcEEEEE
Confidence 9999997765444332 122333333221111111111121122111 123566666666543 56799998
Q ss_pred cchhh------------------------------------------------------------HHHHHHHHHhC--CC
Q 007280 412 ETKKG------------------------------------------------------------ADALEHWLYMN--GF 429 (609)
Q Consensus 412 ~t~~~------------------------------------------------------------~~~l~~~L~~~--~~ 429 (609)
|++.. ++.+++.|... +.
T Consensus 206 nrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~ 285 (505)
T TIGR00595 206 NRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGA 285 (505)
T ss_pred eCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCC
Confidence 77643 47777777765 67
Q ss_pred CcEEecCccCHHHH--HHHHHhhhcCCCcEEEEccccccCCCCCCccEEE--EcCCCC----------CHHHHHHHhhhc
Q 007280 430 PATTIHGDRTQQER--ELALRSFKSGKTPILVATDVAARGLDIPHVAHVV--NFDLPN----------DIDDYVHRIGRT 495 (609)
Q Consensus 430 ~~~~ihg~~~~~~R--~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI--~~d~p~----------s~~~y~QriGRa 495 (609)
++..+|+++++.++ +++++.|++|+.+|||+|+++++|+|+|+|++|+ ++|... ....|+|++||+
T Consensus 286 ~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRa 365 (505)
T TIGR00595 286 RIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRA 365 (505)
T ss_pred cEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhcc
Confidence 88999999987766 8999999999999999999999999999999985 555422 246789999999
Q ss_pred ccCCCCceEEEEEcC
Q 007280 496 GRAGKSGLATAFFNE 510 (609)
Q Consensus 496 gR~g~~G~~~~f~~~ 510 (609)
||.++.|.+++....
T Consensus 366 gR~~~~g~viiqt~~ 380 (505)
T TIGR00595 366 GRAEDPGQVIIQTYN 380 (505)
T ss_pred CCCCCCCEEEEEeCC
Confidence 999999999866543
No 89
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=2.8e-29 Score=269.19 Aligned_cols=302 Identities=22% Similarity=0.288 Sum_probs=200.4
Q ss_pred CCCCHHHHHHHhhHhC----CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIG----GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~----~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
.+|+++|++++..+.. .+..++++|||+|||.+++..+ ..+.. .+||||||++|+.||++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~-~~~~~---------------~~Lvlv~~~~L~~Qw~~ 98 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAI-AELKR---------------STLVLVPTKELLDQWAE 98 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHH-HHhcC---------------CEEEEECcHHHHHHHHH
Confidence 4699999999998887 8899999999999999765533 22211 19999999999999987
Q ss_pred HHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHH
Q 007280 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKI 321 (609)
Q Consensus 242 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i 321 (609)
.+.++.... ...-.+++.... +.. ..|.|+|.+.+........+....+.+||+||||++....| +.+
T Consensus 99 ~~~~~~~~~--~~~g~~~~~~~~-----~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~----~~~ 166 (442)
T COG1061 99 ALKKFLLLN--DEIGIYGGGEKE-----LEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY----RRI 166 (442)
T ss_pred HHHHhcCCc--cccceecCceec-----cCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH----HHH
Confidence 777654322 122233333211 111 36999999998774211222344799999999999876443 444
Q ss_pred HHHcCCCCCCCceEEEEEeeccHHHHHH---HHHhhcCcEEEEecccCCcccceeEEEE----EE--eccc---------
Q 007280 322 VQQMDMPPPGMRQTMLFSATFPKEIQRL---ASDFLANYIFLAVGRVGSSTDLIVQRVE----FV--HESD--------- 383 (609)
Q Consensus 322 ~~~l~~~~~~~~q~il~SAT~~~~~~~l---~~~~l~~~~~~~~~~~~~~~~~i~q~~~----~~--~~~~--------- 383 (609)
.+.+... ..++.||||++..-... ...++ .++.+.........+.....+. .+ ....
T Consensus 167 ~~~~~~~----~~~LGLTATp~R~D~~~~~~l~~~~-g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~ 241 (442)
T COG1061 167 LELLSAA----YPRLGLTATPEREDGGRIGDLFDLI-GPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESA 241 (442)
T ss_pred HHhhhcc----cceeeeccCceeecCCchhHHHHhc-CCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhh
Confidence 4444211 12899999976332111 11111 1223322211111100000000 00 0000
Q ss_pred hH-----------------------HHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCH
Q 007280 384 KR-----------------------SHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ 440 (609)
Q Consensus 384 k~-----------------------~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~ 440 (609)
+. ...+..+........ +..++|||+..+.+++.++..|...++ +..+.++.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~ 318 (442)
T COG1061 242 RFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPK 318 (442)
T ss_pred hhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCH
Confidence 00 000111111111111 367899999999999999999988888 8899999999
Q ss_pred HHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhccc-CCCCce
Q 007280 441 QERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGR-AGKSGL 503 (609)
Q Consensus 441 ~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR-~g~~G~ 503 (609)
.+|+++++.|+.|.+++||++.|+.+|+|+|+++++|......|...|+||+||.-| ...++.
T Consensus 319 ~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 319 EEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999 333444
No 90
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2e-28 Score=271.27 Aligned_cols=321 Identities=18% Similarity=0.204 Sum_probs=239.5
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.|+++|--.--++.+| -|+.++||+|||+++.+|++...+.... +-||+||.+||.|.++++..+
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~G~~-------------V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALTGKG-------------VHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHcCCC-------------EEEEecCHHHHHHHHHHHHHH
Confidence 6788887766565555 5899999999999999999754443321 779999999999999999999
Q ss_pred hccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHccc------ccccceEEEEeccchhhh-hcC-----
Q 007280 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML-DMG----- 313 (609)
Q Consensus 247 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~~------~~l~~i~~lVlDEah~~l-~~g----- 313 (609)
....++++.+++++.+..++...+ .++|+|+||++| .|+|.... ..+..+.++||||||.|| |..
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLi 223 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLI 223 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCcee
Confidence 999999999999998877666654 489999999999 99987654 236779999999999966 211
Q ss_pred ----------CHHHHHHHHHHcCCC-------------------------------------------------------
Q 007280 314 ----------FEPQIRKIVQQMDMP------------------------------------------------------- 328 (609)
Q Consensus 314 ----------f~~~i~~i~~~l~~~------------------------------------------------------- 328 (609)
....+..++..+...
T Consensus 224 iSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~ 303 (830)
T PRK12904 224 ISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKR 303 (830)
T ss_pred eECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 111222222222100
Q ss_pred ------------------------------------------CCCC----------------ceEEEEEeeccHHHHHHH
Q 007280 329 ------------------------------------------PPGM----------------RQTMLFSATFPKEIQRLA 350 (609)
Q Consensus 329 ------------------------------------------~~~~----------------~q~il~SAT~~~~~~~l~ 350 (609)
-.+. .++..||.|...+..++.
T Consensus 304 d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 383 (830)
T PRK12904 304 DVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFR 383 (830)
T ss_pred CCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHH
Confidence 0000 135556777655555554
Q ss_pred HHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCC
Q 007280 351 SDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (609)
Q Consensus 351 ~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~ 430 (609)
..|--+.+.+.. .-.....-.....+.....|...+.+.+..... +..++||||+|++.++.|+++|...+++
T Consensus 384 ~iY~l~vv~IPt--nkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~-----~grpVLIft~Si~~se~Ls~~L~~~gi~ 456 (830)
T PRK12904 384 EIYNLDVVVIPT--NRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHK-----KGQPVLVGTVSIEKSELLSKLLKKAGIP 456 (830)
T ss_pred HHhCCCEEEcCC--CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHHHHHCCCc
Confidence 444333322211 111111111223455666788888888765432 3778999999999999999999999999
Q ss_pred cEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCc-------------------------------------
Q 007280 431 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV------------------------------------- 473 (609)
Q Consensus 431 ~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v------------------------------------- 473 (609)
+..+|+. +.+|+..+..|+.+...|+|||++|+||+||+--
T Consensus 457 ~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G 534 (830)
T PRK12904 457 HNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAG 534 (830)
T ss_pred eEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcC
Confidence 9999995 8899999999999999999999999999999642
Q ss_pred -cEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 474 -AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 474 -~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
=|||--..+.|..--.|-.||+||.|.+|.+..|++-+|.
T Consensus 535 GLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 535 GLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred CCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 2788889999999999999999999999999999987654
No 91
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=8.4e-28 Score=265.28 Aligned_cols=322 Identities=19% Similarity=0.233 Sum_probs=231.8
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
..|+++|--+--++.+|+ |+...||+|||+++.+|++...+.... |-|++||-.||.|-++.+..
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~-------------v~vvT~neyLA~Rd~e~~~~ 143 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKG-------------VHVVTVNEYLSSRDATEMGE 143 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCC-------------eEEEeccHHHHHhhHHHHHH
Confidence 368888877766666654 999999999999999999887776543 89999999999999999999
Q ss_pred hhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHcc------cccccceEEEEeccchhhh-hcC----
Q 007280 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DMG---- 313 (609)
Q Consensus 246 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~------~~~l~~i~~lVlDEah~~l-~~g---- 313 (609)
+....++++.++.+..+..+....+ .|||+++|...| .|.|... ......+.+.|+||+|.|| |..
T Consensus 144 ~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPL 221 (796)
T PRK12906 144 LYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPL 221 (796)
T ss_pred HHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCce
Confidence 9999999999998877655443333 589999998776 3444332 1124567899999999855 211
Q ss_pred -----------CHHHHHHHHHHcCCC-------------------------------------------CCC--------
Q 007280 314 -----------FEPQIRKIVQQMDMP-------------------------------------------PPG-------- 331 (609)
Q Consensus 314 -----------f~~~i~~i~~~l~~~-------------------------------------------~~~-------- 331 (609)
+...+..++..+... ...
T Consensus 222 iisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i 301 (796)
T PRK12906 222 IISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHI 301 (796)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHH
Confidence 011111122111000 000
Q ss_pred -------------------------------------------------------------------------CceEEEE
Q 007280 332 -------------------------------------------------------------------------MRQTMLF 338 (609)
Q Consensus 332 -------------------------------------------------------------------------~~q~il~ 338 (609)
-.++..|
T Consensus 302 ~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~Gm 381 (796)
T PRK12906 302 DQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGM 381 (796)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhcc
Confidence 0034455
Q ss_pred EeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHH
Q 007280 339 SATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGAD 418 (609)
Q Consensus 339 SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~ 418 (609)
|.|...+..++.+.|--+.+. +...-.....-.....+.....|...+.+.+..... +..++||||+|+..++
T Consensus 382 TGTa~~e~~Ef~~iY~l~vv~--IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~-----~g~pvLI~t~si~~se 454 (796)
T PRK12906 382 TGTAKTEEEEFREIYNMEVIT--IPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHA-----KGQPVLVGTVAIESSE 454 (796)
T ss_pred CCCCHHHHHHHHHHhCCCEEE--cCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCCEEEEeCcHHHHH
Confidence 566544444443333222222 211111111111223344556677777777765432 3788999999999999
Q ss_pred HHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCC---Ccc-----EEEEcCCCCCHHHHHH
Q 007280 419 ALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIP---HVA-----HVVNFDLPNDIDDYVH 490 (609)
Q Consensus 419 ~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip---~v~-----~VI~~d~p~s~~~y~Q 490 (609)
.|++.|...++++..+|+++.+.+++.+.+.++.|. |+|||++|+||+||+ +|. |||++++|.+...|.|
T Consensus 455 ~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Q 532 (796)
T PRK12906 455 RLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQ 532 (796)
T ss_pred HHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHH
Confidence 999999999999999999999888888888888777 999999999999994 899 9999999999999999
Q ss_pred HhhhcccCCCCceEEEEEcCCCh
Q 007280 491 RIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 491 riGRagR~g~~G~~~~f~~~~~~ 513 (609)
++|||||.|.+|.+.+|++.+|.
T Consensus 533 l~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 533 LRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred HhhhhccCCCCcceEEEEeccch
Confidence 99999999999999999997764
No 92
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.5e-26 Score=259.21 Aligned_cols=308 Identities=20% Similarity=0.236 Sum_probs=236.8
Q ss_pred CCCHHHHHHHhhHhCC------CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHH
Q 007280 167 KPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~------~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~ 240 (609)
.-||-|..||..+.+. .|-+||+..|-|||-+++=+++..++..+ +|.||+||.-||+|.+
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GK-------------QVAvLVPTTlLA~QHy 660 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGK-------------QVAVLVPTTLLAQQHY 660 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCC-------------eEEEEcccHHhHHHHH
Confidence 4588999999988742 57899999999999999988887776553 3999999999999999
Q ss_pred HHHHHhhccCCeEEEEEECCcChHHHHHHHh---c-CCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHH
Q 007280 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEP 316 (609)
Q Consensus 241 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~---~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~ 316 (609)
+.+++-...+.+++.++.--.+.+++...++ . ..||||+| +-|....+.++++.+||+||-|| |.-
T Consensus 661 ~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEEqR-----FGV 730 (1139)
T COG1197 661 ETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEEQR-----FGV 730 (1139)
T ss_pred HHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEechhh-----cCc
Confidence 9999988889999999877777666655543 3 48999999 33334557799999999999999 554
Q ss_pred HHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHH
Q 007280 317 QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQV 396 (609)
Q Consensus 317 ~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~ 396 (609)
.-+.-++.+ ..+.-++-||||+=+..-.++-.-+++.-.+..... .....+.+ +.+.+. ..+-+.+....
T Consensus 731 k~KEkLK~L----r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~---~R~pV~T~--V~~~d~-~~ireAI~REl 800 (1139)
T COG1197 731 KHKEKLKEL----RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE---DRLPVKTF--VSEYDD-LLIREAILREL 800 (1139)
T ss_pred cHHHHHHHH----hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC---CCcceEEE--EecCCh-HHHHHHHHHHH
Confidence 445555555 455679999999755444454444455444433222 22222222 222222 23333333333
Q ss_pred hcCcCCCCceEEEEecchhhHHHHHHHHHhC--CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCcc
Q 007280 397 ANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVA 474 (609)
Q Consensus 397 ~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~ 474 (609)
. .++++-..+|.++.++.+++.|+.. ...+...||.|+..+-++++.+|.+|+.+|||||.+.+.|||||+++
T Consensus 801 ~-----RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnAN 875 (1139)
T COG1197 801 L-----RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNAN 875 (1139)
T ss_pred h-----cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCc
Confidence 2 3778888899999999999999876 45677899999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC-CHHHHHHHhhhcccCCCCceEEEEEcCCC
Q 007280 475 HVVNFDLPN-DIDDYVHRIGRTGRAGKSGLATAFFNENN 512 (609)
Q Consensus 475 ~VI~~d~p~-s~~~y~QriGRagR~g~~G~~~~f~~~~~ 512 (609)
++|.-+... -.++..|..||+||..+.++|++++.+..
T Consensus 876 TiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 876 TIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred eEEEeccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 999666543 67999999999999999999999998754
No 93
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.2e-27 Score=255.82 Aligned_cols=308 Identities=21% Similarity=0.265 Sum_probs=224.6
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.|-++|++||-++..+..+++.|+|.+|||+++..+|...-. + ..++++.+|-++|.+|-+..++.-
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~---h----------~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK---H----------MTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh---h----------ccceEecchhhhhccchHHHHHHh
Confidence 688999999999999999999999999999987776542221 1 123999999999999998888774
Q ss_pred hccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcC
Q 007280 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 326 (609)
Q Consensus 247 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~ 326 (609)
... +.+++|+..+ .....+||+|.+.|..+|.++...++++.+|||||+|.+.|....-.++.++-.+
T Consensus 364 F~D----vgLlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl- 431 (1248)
T KOG0947|consen 364 FGD----VGLLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML- 431 (1248)
T ss_pred ccc----cceeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeec-
Confidence 332 2266777653 3457899999999999999988778999999999999999988888888888888
Q ss_pred CCCCCCceEEEEEeeccHHHHHHHHHhh---cCcEEEEecccCCcccceeEEEEEEec----------------------
Q 007280 327 MPPPGMRQTMLFSATFPKEIQRLASDFL---ANYIFLAVGRVGSSTDLIVQRVEFVHE---------------------- 381 (609)
Q Consensus 327 ~~~~~~~q~il~SAT~~~~~~~l~~~~l---~~~~~~~~~~~~~~~~~i~q~~~~~~~---------------------- 381 (609)
|.+.++||+|||+|+.. +++.+.- .+.+.+.... . .+.....+.++..
T Consensus 432 ---P~HV~~IlLSATVPN~~-EFA~WIGRtK~K~IyViST~-k--RPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~ 504 (1248)
T KOG0947|consen 432 ---PRHVNFILLSATVPNTL-EFADWIGRTKQKTIYVISTS-K--RPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKD 504 (1248)
T ss_pred ---cccceEEEEeccCCChH-HHHHHhhhccCceEEEEecC-C--CccceEEEEEeccceehhhcccchhhhhcchhhhh
Confidence 89999999999998754 3444332 1222221110 0 0000000111100
Q ss_pred ------------------------------------------cchH--HHHHHHHHHHHhcCcCCCCceEEEEecchhhH
Q 007280 382 ------------------------------------------SDKR--SHLMDLLHAQVANGVHGKQALTLVFVETKKGA 417 (609)
Q Consensus 382 ------------------------------------------~~k~--~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~ 417 (609)
..+. ...++++...... ..-++||||-+++.|
T Consensus 505 ~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~----~lLP~VvFvFSkkrC 580 (1248)
T KOG0947|consen 505 SLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK----NLLPVVVFVFSKKRC 580 (1248)
T ss_pred hhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc----ccCceEEEEEccccH
Confidence 0001 1233333222211 245799999999999
Q ss_pred HHHHHHHHhC---------------------------------------CCCcEEecCccCHHHHHHHHHhhhcCCCcEE
Q 007280 418 DALEHWLYMN---------------------------------------GFPATTIHGDRTQQERELALRSFKSGKTPIL 458 (609)
Q Consensus 418 ~~l~~~L~~~---------------------------------------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~IL 458 (609)
+..+++|... ...+.++||++-+--++-+...|..|-++||
T Consensus 581 de~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVL 660 (1248)
T KOG0947|consen 581 DEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVL 660 (1248)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEE
Confidence 9999999532 1234568999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEcCC---------CCCHHHHHHHhhhcccCCC--CceEEEEEcCC
Q 007280 459 VATDVAARGLDIPHVAHVVNFDL---------PNDIDDYVHRIGRTGRAGK--SGLATAFFNEN 511 (609)
Q Consensus 459 VaT~v~~~GlDip~v~~VI~~d~---------p~s~~~y~QriGRagR~g~--~G~~~~f~~~~ 511 (609)
+||..++.|+|.|.-.+|+. .+ --.+-+|.|+.|||||.|- +|+++++....
T Consensus 661 FATETFAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 661 FATETFAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eehhhhhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 99999999999998666652 22 1257899999999999875 78887776543
No 94
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.7e-27 Score=260.66 Aligned_cols=351 Identities=19% Similarity=0.235 Sum_probs=245.0
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCC-CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEE
Q 007280 151 DLGEALNLNIRRCKYVKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALIL 229 (609)
Q Consensus 151 ~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~-~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil 229 (609)
.++++-..++. ++..++++|....+..+.+ .++++|||||+|||.++++-||+.+-.+..... +......+++++
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dg--s~nl~~fKIVYI 370 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDG--SVNLAPFKIVYI 370 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccccc--ceecccceEEEE
Confidence 46666665554 5667999999999988864 679999999999999999999998876543111 111223469999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc---cccccceEEEEeccc
Q 007280 230 APTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA---RVSLQMIRYLALDEA 306 (609)
Q Consensus 230 ~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~---~~~l~~i~~lVlDEa 306 (609)
+|..+|++.+...+.+.....+++|...+|......+.- .+..|+|+||+.. |.+.+. ....+.++++|+||+
T Consensus 371 APmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEI 446 (1674)
T KOG0951|consen 371 APMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEI 446 (1674)
T ss_pred eeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhh
Confidence 999999999999998888889999999999876443321 2479999999997 444443 223556899999999
Q ss_pred hhhhhcCCHHHHHHHHHHcCC---CCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccc
Q 007280 307 DRMLDMGFEPQIRKIVQQMDM---PPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (609)
Q Consensus 307 h~~l~~gf~~~i~~i~~~l~~---~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~ 383 (609)
|.+- ....+.+..|+..... .......++.+|||+|+- ++.+.-+..++.-+......-...-+.|.+.-+....
T Consensus 447 HLLh-DdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~ 524 (1674)
T KOG0951|consen 447 HLLH-DDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKK 524 (1674)
T ss_pred hhcc-cccchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccCcccCcCCccceEeccccCC
Confidence 9553 3456777777665421 123456799999999974 3333322223322222211222233555555544332
Q ss_pred ---hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHh----------------------------------
Q 007280 384 ---KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYM---------------------------------- 426 (609)
Q Consensus 384 ---k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~---------------------------------- 426 (609)
+.+.+-+...+.+..+. + ..++||||.+++++...+..++.
T Consensus 525 ~~~~~qamNe~~yeKVm~~a-g-k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dL 602 (1674)
T KOG0951|consen 525 PLKRFQAMNEACYEKVLEHA-G-KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDL 602 (1674)
T ss_pred chHHHHHHHHHHHHHHHHhC-C-CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhH
Confidence 23334444444443332 2 47899999999887777766641
Q ss_pred ---CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEE----EcCC------CCCHHHHHHHhh
Q 007280 427 ---NGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVV----NFDL------PNDIDDYVHRIG 493 (609)
Q Consensus 427 ---~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI----~~d~------p~s~~~y~QriG 493 (609)
..+....+|.+|+..+|+.+.+.|..|.++|||+|..+++|+|+|.-+++| .||+ +.++.+.+||+|
T Consensus 603 kdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 603 KDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred HHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 124567789999999999999999999999999999999999999877776 4665 347899999999
Q ss_pred hcccCCC--CceEEEEEcCCCh
Q 007280 494 RTGRAGK--SGLATAFFNENNM 513 (609)
Q Consensus 494 RagR~g~--~G~~~~f~~~~~~ 513 (609)
||||.+- .|..++..+..+.
T Consensus 683 ragrp~~D~~gegiiit~~se~ 704 (1674)
T KOG0951|consen 683 RAGRPQYDTCGEGIIITDHSEL 704 (1674)
T ss_pred hcCCCccCcCCceeeccCchHh
Confidence 9999754 4555555444443
No 95
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.1e-27 Score=266.96 Aligned_cols=334 Identities=19% Similarity=0.281 Sum_probs=226.0
Q ss_pred HHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccC
Q 007280 171 VQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT 250 (609)
Q Consensus 171 iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~ 250 (609)
+..+.+..+.+++.+||+++||||||+. +|.+ +++..... .-.+.|+.|+|.-|..+++.+..- .
T Consensus 54 ~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~--lle~g~~~--------~g~I~~tQPRRlAArsvA~RvAee---l 118 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQF--LLEEGLGI--------AGKIGCTQPRRLAARSVAERVAEE---L 118 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHH--HHhhhccc--------CCeEEecCchHHHHHHHHHHHHHH---h
Confidence 4455566777888999999999999994 4432 33333211 123899999998888876655442 2
Q ss_pred CeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccch-hhhhcCCHHHH-HHHHHHcCCC
Q 007280 251 GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEAD-RMLDMGFEPQI-RKIVQQMDMP 328 (609)
Q Consensus 251 ~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah-~~l~~gf~~~i-~~i~~~l~~~ 328 (609)
+.++...+|.....+. .......|-|+|.|.|+..+..+.. |+.+++|||||+| |.++..|.--+ +.++...
T Consensus 119 ~~~~G~~VGY~iRfe~--~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~r--- 192 (845)
T COG1643 119 GEKLGETVGYSIRFES--KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARR--- 192 (845)
T ss_pred CCCcCceeeEEEEeec--cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhc---
Confidence 2222222222211111 1123468999999999999998776 9999999999999 45554443333 3334444
Q ss_pred CCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEE
Q 007280 329 PPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTL 408 (609)
Q Consensus 329 ~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~l 408 (609)
+++.++|+||||+.. +++.+.|...+++...++... +. +.+.+.......+.+.+...+........+.+|
T Consensus 193 -r~DLKiIimSATld~--~rfs~~f~~apvi~i~GR~fP----Ve--i~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdIL 263 (845)
T COG1643 193 -RDDLKLIIMSATLDA--ERFSAYFGNAPVIEIEGRTYP----VE--IRYLPEAEADYILLDAIVAAVDIHLREGSGSIL 263 (845)
T ss_pred -CCCceEEEEecccCH--HHHHHHcCCCCEEEecCCccc----eE--EEecCCCCcchhHHHHHHHHHHHhccCCCCCEE
Confidence 456899999999975 455554444555544433322 11 112111111121555555444444444578899
Q ss_pred EEecchhhHHHHHHHHHh----CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCC---
Q 007280 409 VFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDL--- 481 (609)
Q Consensus 409 VF~~t~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~--- 481 (609)
||.+..++++.+++.|.. ..+.+.++||.|+.+++.++++--..++.+|++||+||+++|+||+|.+||+-++
T Consensus 264 vFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~ 343 (845)
T COG1643 264 VFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKE 343 (845)
T ss_pred EECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccc
Confidence 999999999999999987 3477889999999999999999999998899999999999999999999996443
Q ss_pred ---------------CCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHH--HHHHHHHHhcccchHHHH
Q 007280 482 ---------------PNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLAR--PLTELMQEANQEVPAWLN 535 (609)
Q Consensus 482 ---------------p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~--~l~~~l~~~~q~vp~~l~ 535 (609)
|-|-++..||.|||||. .+|.||-+|++++...+. ...++++...+.+--.|.
T Consensus 344 ~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~ 413 (845)
T COG1643 344 KRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLK 413 (845)
T ss_pred cccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHH
Confidence 44788899999999999 599999999975443221 244555544444333333
No 96
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=1.6e-26 Score=263.83 Aligned_cols=315 Identities=19% Similarity=0.254 Sum_probs=212.9
Q ss_pred CCCHHHHHHHhhHh----CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~----~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
+++|||.+++..++ .+.+.|++.++|.|||+..+. ++..+........ .+|||||. .|..||..+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~~~~g---------p~LIVvP~-SlL~nW~~E 237 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYRGITG---------PHMVVAPK-STLGNWMNE 237 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhcCCCC---------CEEEEeCh-HHHHHHHHH
Confidence 68999999999875 567899999999999997543 4444443221111 18999997 566889999
Q ss_pred HHHhhccCCeEEEEEECCcChHHHHHHH---hcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHH
Q 007280 243 AKKFSYQTGVKVVVAYGGAPINQQLREL---ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIR 319 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~ 319 (609)
+.+|+. .++++.++|........... ...++|+|+|++.+...... +.--.+++|||||||++-.. ...+.
T Consensus 238 i~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Skls 311 (1033)
T PLN03142 238 IRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLS 311 (1033)
T ss_pred HHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHH
Confidence 999874 36777777765433332211 23579999999988654322 22235789999999998653 34455
Q ss_pred HHHHHcCCCCCCCceEEEEEeecc-HHHHHH---HH-------------------------------------Hhhc---
Q 007280 320 KIVQQMDMPPPGMRQTMLFSATFP-KEIQRL---AS-------------------------------------DFLA--- 355 (609)
Q Consensus 320 ~i~~~l~~~~~~~~q~il~SAT~~-~~~~~l---~~-------------------------------------~~l~--- 355 (609)
..+..+. ....+++|+|+- +.+.++ +. .|+.
T Consensus 312 kalr~L~-----a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~ 386 (1033)
T PLN03142 312 KTMRLFS-----TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRL 386 (1033)
T ss_pred HHHHHhh-----cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhh
Confidence 5555552 234688999962 111111 10 0000
Q ss_pred ---------Cc--EEEEecccC--------------------Ccc----------------cceeEE----------EEE
Q 007280 356 ---------NY--IFLAVGRVG--------------------SST----------------DLIVQR----------VEF 378 (609)
Q Consensus 356 ---------~~--~~~~~~~~~--------------------~~~----------------~~i~q~----------~~~ 378 (609)
.. ..+.+.... ... +.+... -..
T Consensus 387 KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~l 466 (1033)
T PLN03142 387 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHL 466 (1033)
T ss_pred HHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHH
Confidence 00 000000000 000 000000 001
Q ss_pred EeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcC---CC
Q 007280 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSG---KT 455 (609)
Q Consensus 379 ~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g---~~ 455 (609)
+....|...|..+|..... ...++|||++....++.|.++|...++.+..|||.++..+|+.+++.|+.. ..
T Consensus 467 ie~SgKl~lLdkLL~~Lk~-----~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~ 541 (1033)
T PLN03142 467 VENSGKMVLLDKLLPKLKE-----RDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKF 541 (1033)
T ss_pred hhhhhHHHHHHHHHHHHHh-----cCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCce
Confidence 1123344445555554432 367899999999999999999999999999999999999999999999753 23
Q ss_pred cEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEE
Q 007280 456 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFF 508 (609)
Q Consensus 456 ~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~ 508 (609)
-+|++|.+++.|||+..+++||+||++||+..+.|++||+.|.|++..+.++.
T Consensus 542 VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 542 VFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred EEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 57899999999999999999999999999999999999999999987665554
No 97
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.2e-25 Score=218.74 Aligned_cols=313 Identities=20% Similarity=0.252 Sum_probs=226.2
Q ss_pred CCCHHHHHHHhhHh----CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~----~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
+++|.|+.+-..++ +..++|+.|-||+|||.+ +++.++..++.+. .+.|.+|+...+..++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~G~------------~vciASPRvDVclEl~~R 163 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQGG------------RVCIASPRVDVCLELYPR 163 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhcCC------------eEEEecCcccchHHHHHH
Confidence 68999998776554 578999999999999984 6667777776542 389999999999999888
Q ss_pred HHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHH
Q 007280 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~ 322 (609)
++.-. .++.+.++||+..... ...++|||...|+.+ -+.+++||+||+|..--.. .+.+..-+
T Consensus 164 lk~aF--~~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrF-------k~aFD~liIDEVDAFP~~~-d~~L~~Av 226 (441)
T COG4098 164 LKQAF--SNCDIDLLYGDSDSYF-------RAPLVVATTHQLLRF-------KQAFDLLIIDEVDAFPFSD-DQSLQYAV 226 (441)
T ss_pred HHHhh--ccCCeeeEecCCchhc-------cccEEEEehHHHHHH-------HhhccEEEEeccccccccC-CHHHHHHH
Confidence 87743 3467888899876321 158999999999876 3457899999999643111 23344444
Q ss_pred HHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchH-------HHHHHHHHHH
Q 007280 323 QQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKR-------SHLMDLLHAQ 395 (609)
Q Consensus 323 ~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~-------~~l~~~l~~~ 395 (609)
+... ...--+|.+|||.++++++.+. ..+...+.+.......+.....+.+...-.|. ..|...|+.+
T Consensus 227 ~~ar---k~~g~~IylTATp~k~l~r~~~--~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq 301 (441)
T COG4098 227 KKAR---KKEGATIYLTATPTKKLERKIL--KGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQ 301 (441)
T ss_pred HHhh---cccCceEEEecCChHHHHHHhh--hCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHH
Confidence 4332 3345689999999987665443 23344455555555555555556655543332 2566677666
Q ss_pred HhcCcCCCCceEEEEecchhhHHHHHHHHHhC-C-CCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCc
Q 007280 396 VANGVHGKQALTLVFVETKKGADALEHWLYMN-G-FPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV 473 (609)
Q Consensus 396 ~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~-~-~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v 473 (609)
... +.++|||+++++..+.++..|+.. . ..+..+|+. .+.|.+.++.|++|+++|||+|.+++||+.+|+|
T Consensus 302 ~~~-----~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~v 374 (441)
T COG4098 302 RKT-----GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNV 374 (441)
T ss_pred Hhc-----CCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccc
Confidence 543 778999999999999999999543 2 334678884 5688999999999999999999999999999999
Q ss_pred cEEEEcCCC--CCHHHHHHHhhhcccCCC--CceEEEEEcCCChhhHHHHHH
Q 007280 474 AHVVNFDLP--NDIDDYVHRIGRTGRAGK--SGLATAFFNENNMSLARPLTE 521 (609)
Q Consensus 474 ~~VI~~d~p--~s~~~y~QriGRagR~g~--~G~~~~f~~~~~~~~~~~l~~ 521 (609)
+++|.-.-- .+.+..+|..||+||.-. .|.++.|......++.....+
T Consensus 375 dV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~ke 426 (441)
T COG4098 375 DVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKE 426 (441)
T ss_pred eEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHHH
Confidence 986643322 478899999999999533 677777776666555444433
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=1.9e-26 Score=268.05 Aligned_cols=310 Identities=18% Similarity=0.252 Sum_probs=196.0
Q ss_pred CCCCHHHHHHHhhHh----C-CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISI----G-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~----~-~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~ 240 (609)
..|+++|.+||..+. + .+.+|++++||||||.+++ .++..+++.... .++|||+|+++|+.|+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~~~~----------~rVLfLvDR~~L~~Qa~ 480 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKAKRF----------RRILFLVDRSALGEQAE 480 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhcCcc----------CeEEEEecHHHHHHHHH
Confidence 358999999998765 2 4678999999999998744 355556544321 24999999999999999
Q ss_pred HHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc-----cccccceEEEEeccchhhhh----
Q 007280 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-----RVSLQMIRYLALDEADRMLD---- 311 (609)
Q Consensus 241 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~-----~~~l~~i~~lVlDEah~~l~---- 311 (609)
+.++.+..........+++.....+. .......|+|+|++.|...+... ...+..+++||+|||||-..
T Consensus 481 ~~F~~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~ 558 (1123)
T PRK11448 481 DAFKDTKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKE 558 (1123)
T ss_pred HHHHhcccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccc
Confidence 99988643222111111211111111 11234789999999998765321 13567889999999999531
Q ss_pred -----cC------CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHH--------------HHhhcC---cEEEEec
Q 007280 312 -----MG------FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLA--------------SDFLAN---YIFLAVG 363 (609)
Q Consensus 312 -----~g------f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~--------------~~~l~~---~~~~~~~ 363 (609)
.. +...++.++.+++ ...|+||||+......+. .-++.+ ++.+...
T Consensus 559 ~~~~~~~~~~~~~~~~~yr~iL~yFd------A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~ 632 (1123)
T PRK11448 559 MSEGELQFRDQLDYVSKYRRVLDYFD------AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETR 632 (1123)
T ss_pred cccchhccchhhhHHHHHHHHHhhcC------ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEE
Confidence 11 1356677777552 357999999864332211 111211 1111100
Q ss_pred --ccCCccc------ceeE---EE--EEEecc--------ch-------HHHHHHHHHHHHhcCcCCCCceEEEEecchh
Q 007280 364 --RVGSSTD------LIVQ---RV--EFVHES--------DK-------RSHLMDLLHAQVANGVHGKQALTLVFVETKK 415 (609)
Q Consensus 364 --~~~~~~~------~i~q---~~--~~~~~~--------~k-------~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~ 415 (609)
..+.... .+.. .+ ...++. .+ ...+++.+...... ....|+||||.+++
T Consensus 633 ~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~---~~~~KtiIF~~s~~ 709 (1123)
T PRK11448 633 LSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDP---TGEGKTLIFAATDA 709 (1123)
T ss_pred eccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhc---cCCCcEEEEEcCHH
Confidence 0000000 0000 00 000000 00 00111112222211 12478999999999
Q ss_pred hHHHHHHHHHhC------CC---CcEEecCccCHHHHHHHHHhhhcCCC-cEEEEccccccCCCCCCccEEEEcCCCCCH
Q 007280 416 GADALEHWLYMN------GF---PATTIHGDRTQQERELALRSFKSGKT-PILVATDVAARGLDIPHVAHVVNFDLPNDI 485 (609)
Q Consensus 416 ~~~~l~~~L~~~------~~---~~~~ihg~~~~~~R~~~~~~F~~g~~-~ILVaT~v~~~GlDip~v~~VI~~d~p~s~ 485 (609)
+|+.+.+.|... ++ .+..+||+.+ ++++++++|+++.. .|||+++++.+|+|+|.|.+||+++++.|.
T Consensus 710 HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~ 787 (1123)
T PRK11448 710 HADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSR 787 (1123)
T ss_pred HHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCH
Confidence 999999887653 22 4567899875 56789999999887 489999999999999999999999999999
Q ss_pred HHHHHHhhhcccCC
Q 007280 486 DDYVHRIGRTGRAG 499 (609)
Q Consensus 486 ~~y~QriGRagR~g 499 (609)
..|+||+||+.|.-
T Consensus 788 ~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 788 ILYEQMLGRATRLC 801 (1123)
T ss_pred HHHHHHHhhhccCC
Confidence 99999999999963
No 99
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=9e-26 Score=249.49 Aligned_cols=321 Identities=16% Similarity=0.192 Sum_probs=231.4
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.|+++|--.--.+ .+.-|+.++||.|||++|.+|++.+.+.... |.||+|+++||.|.++++..+
T Consensus 82 ~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~g~~-------------VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 82 RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALTGKG-------------VHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhcCCC-------------EEEEeCCHHHHHHHHHHHHHH
Confidence 5677775443333 3456899999999999999999887765432 999999999999999999999
Q ss_pred hccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHcc-cccc-----cceEEEEeccchhhhhcC------
Q 007280 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA-RVSL-----QMIRYLALDEADRMLDMG------ 313 (609)
Q Consensus 247 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~-~~~l-----~~i~~lVlDEah~~l~~g------ 313 (609)
....++++.+++++.+..+... ...|+|+|+||+.| +|+|... .+.. ..+.++|+||||.||-..
T Consensus 147 ~~~lGlsv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLI 224 (908)
T PRK13107 147 FEFLGLTVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLI 224 (908)
T ss_pred HHhcCCeEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCcee
Confidence 9999999999999887633322 23699999999999 8888765 3333 678999999999866211
Q ss_pred ----------CHHHHHHHHHHcC-------------------------------------------C----C---CC---
Q 007280 314 ----------FEPQIRKIVQQMD-------------------------------------------M----P---PP--- 330 (609)
Q Consensus 314 ----------f~~~i~~i~~~l~-------------------------------------------~----~---~~--- 330 (609)
+...+..++..+. . . ..
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~ 304 (908)
T PRK13107 225 ISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANI 304 (908)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhh
Confidence 0011111111100 0 0 00
Q ss_pred --------------------------------------------------------------CC----------------
Q 007280 331 --------------------------------------------------------------GM---------------- 332 (609)
Q Consensus 331 --------------------------------------------------------------~~---------------- 332 (609)
+.
T Consensus 305 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (908)
T PRK13107 305 SLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQY 384 (908)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhh
Confidence 00
Q ss_pred ceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEec
Q 007280 333 RQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVE 412 (609)
Q Consensus 333 ~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~ 412 (609)
.++..||.|...+..++...|--+.+.+. ..-.....-.....+.....|...+++.+..... +..++||||.
T Consensus 385 ~kL~GMTGTa~te~~Ef~~iY~l~Vv~IP--Tnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~-----~GrpVLV~t~ 457 (908)
T PRK13107 385 EKLAGMTGTADTEAFEFQHIYGLDTVVVP--TNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRE-----RGQPVLVGTV 457 (908)
T ss_pred hHhhcccCCChHHHHHHHHHhCCCEEECC--CCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHH-----cCCCEEEEeC
Confidence 02344555554444444443322222221 1111111111223345566777777777665543 3788999999
Q ss_pred chhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCC--------------------
Q 007280 413 TKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPH-------------------- 472 (609)
Q Consensus 413 t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~-------------------- 472 (609)
|+..++.|+.+|...++++..+|+.+.+.+++.+.+.|+.|. |+|||++|+||+||.=
T Consensus 458 sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~ 535 (908)
T PRK13107 458 SIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKA 535 (908)
T ss_pred cHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999962
Q ss_pred -----------------ccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 473 -----------------VAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 473 -----------------v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
==|||--..+.|..--.|..||+||.|.+|.+..|++-+|.
T Consensus 536 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 536 KIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12788888999999999999999999999999999987664
No 100
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=6.8e-27 Score=246.36 Aligned_cols=309 Identities=21% Similarity=0.241 Sum_probs=230.5
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
++-|+|+.+|.++-++..+++.|.|.+|||+++-.+|...+.... ++++.+|-++|.+|-++++..=
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ-------------RVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ-------------RVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC-------------eEEeeChhhhhcchhHHHHHHH
Confidence 678999999999999999999999999999999887776665432 2999999999999999887663
Q ss_pred hccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcC
Q 007280 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 326 (609)
Q Consensus 247 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~ 326 (609)
.. .|.+.+|...+ ...+..||+|.+.|..+|.++.--+..+.|||+||+|.|-|....-.++..+-.+
T Consensus 196 F~----DVGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIll- 263 (1041)
T KOG0948|consen 196 FK----DVGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILL- 263 (1041)
T ss_pred hc----ccceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEec-
Confidence 22 34455666543 3347899999999999999987779999999999999999877666666666666
Q ss_pred CCCCCCceEEEEEeeccHHHHHHHHHhh---cCcEEEEecccCCcccceeEEE----------EEEecc-----chHH--
Q 007280 327 MPPPGMRQTMLFSATFPKEIQRLASDFL---ANYIFLAVGRVGSSTDLIVQRV----------EFVHES-----DKRS-- 386 (609)
Q Consensus 327 ~~~~~~~q~il~SAT~~~~~~~l~~~~l---~~~~~~~~~~~~~~~~~i~q~~----------~~~~~~-----~k~~-- 386 (609)
|++.+.+++|||+|+.. +++++.. ..+..+.... ..+...|+| .+++.. +...
T Consensus 264 ---P~~vr~VFLSATiPNA~-qFAeWI~~ihkQPcHVVYTd---yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~a 336 (1041)
T KOG0948|consen 264 ---PDNVRFVFLSATIPNAR-QFAEWICHIHKQPCHVVYTD---YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKA 336 (1041)
T ss_pred ---cccceEEEEeccCCCHH-HHHHHHHHHhcCCceEEeec---CCCCcceeeeecCCCCeeEEEEecccccchHHHHHH
Confidence 78889999999999864 3555443 3444433221 112222333 222221 1111
Q ss_pred ---------------------------------HHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCC-----
Q 007280 387 ---------------------------------HLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG----- 428 (609)
Q Consensus 387 ---------------------------------~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~----- 428 (609)
.++.+++..+.. +-.++|||+-++++|+.++-.|....
T Consensus 337 m~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~----~~~PVIvFSFSkkeCE~~Alqm~kldfN~de 412 (1041)
T KOG0948|consen 337 MSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMER----NYLPVIVFSFSKKECEAYALQMSKLDFNTDE 412 (1041)
T ss_pred HHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhh----cCCceEEEEecHhHHHHHHHhhccCcCCChh
Confidence 233333333322 35679999999999999988875321
Q ss_pred ----------------------------------CCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCcc
Q 007280 429 ----------------------------------FPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVA 474 (609)
Q Consensus 429 ----------------------------------~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~ 474 (609)
..+..+|+++-+--++.+.-.|.+|-+++|+||..++.|||+|.-+
T Consensus 413 Ek~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkT 492 (1041)
T KOG0948|consen 413 EKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKT 492 (1041)
T ss_pred HHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCccee
Confidence 1334579999999999999999999999999999999999999877
Q ss_pred EEEE----cCC----CCCHHHHHHHhhhcccCCC--CceEEEEEcCC
Q 007280 475 HVVN----FDL----PNDIDDYVHRIGRTGRAGK--SGLATAFFNEN 511 (609)
Q Consensus 475 ~VI~----~d~----p~s~~~y~QriGRagR~g~--~G~~~~f~~~~ 511 (609)
+|+- ||= .-+--+|+|+.|||||.|. .|.||+++++.
T Consensus 493 VvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 493 VVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred EEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 6662 221 1256789999999999886 79999999864
No 101
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.95 E-value=2.5e-26 Score=254.86 Aligned_cols=334 Identities=18% Similarity=0.237 Sum_probs=226.7
Q ss_pred CCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh-
Q 007280 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF- 246 (609)
Q Consensus 168 pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~- 246 (609)
-+..+.+.|..+.+++.++|+++||||||+...--++......+ ....++|..|+|.-|..+++++.+=
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----------~~~~IicTQPRRIsAIsvAeRVa~ER 243 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG----------AACNIICTQPRRISAISVAERVAKER 243 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC----------CCCeEEecCCchHHHHHHHHHHHHHh
Confidence 35677888899999999999999999999965555566555544 1234999999999999998876542
Q ss_pred hccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchh-hhhcCCHHHHHHHHHHc
Q 007280 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-MLDMGFEPQIRKIVQQM 325 (609)
Q Consensus 247 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~-~l~~gf~~~i~~i~~~l 325 (609)
....+-.|..-+...+ .......+++||.|.|++.|.... .+..+.+||+||+|. -.+..|.-.+.+.+...
T Consensus 244 ~~~~g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~i~~DflLi~lk~lL~~ 316 (924)
T KOG0920|consen 244 GESLGEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERSINTDFLLILLKDLLPR 316 (924)
T ss_pred ccccCCeeeEEEeeec------ccCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEEccCCcccHHHHHHHHhhh
Confidence 2223322222111111 111236899999999999998854 488999999999994 44555655555544444
Q ss_pred CCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEe-cccCCcc----cc-----------eeEE------------EE
Q 007280 326 DMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAV-GRVGSST----DL-----------IVQR------------VE 377 (609)
Q Consensus 326 ~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~-~~~~~~~----~~-----------i~q~------------~~ 377 (609)
.++.++||||||+.. ++.++|+.....+.+ ++..... +. ..+. +.
T Consensus 317 ----~p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (924)
T KOG0920|consen 317 ----NPDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLK 389 (924)
T ss_pred ----CCCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccch
Confidence 467899999999973 233333333222222 1111000 00 0000 11
Q ss_pred EEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC-------CCCcEEecCccCHHHHHHHHHhh
Q 007280 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-------GFPATTIHGDRTQQERELALRSF 450 (609)
Q Consensus 378 ~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~-------~~~~~~ihg~~~~~~R~~~~~~F 450 (609)
....+ -...|+..+..++... ...+.+|||.+.+.++..+.+.|... .+-+.++|+.|+..+++.+++..
T Consensus 390 ~~~~~-id~~Li~~li~~I~~~--~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~p 466 (924)
T KOG0920|consen 390 LWEPE-IDYDLIEDLIEYIDER--EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRP 466 (924)
T ss_pred hcccc-ccHHHHHHHHHhcccC--CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCC
Confidence 11112 2234444444444433 34788999999999999999999642 25677899999999999999999
Q ss_pred hcCCCcEEEEccccccCCCCCCccEEEE--------cCCCC----------CHHHHHHHhhhcccCCCCceEEEEEcCCC
Q 007280 451 KSGKTPILVATDVAARGLDIPHVAHVVN--------FDLPN----------DIDDYVHRIGRTGRAGKSGLATAFFNENN 512 (609)
Q Consensus 451 ~~g~~~ILVaT~v~~~GlDip~v~~VI~--------~d~p~----------s~~~y~QriGRagR~g~~G~~~~f~~~~~ 512 (609)
..|..+||+||++|+.+|.|++|.+||+ ||+-. +.++-.||.|||||. ++|.||.+|+...
T Consensus 467 p~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 467 PKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred CCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 9999999999999999999999999995 55533 455667999999999 8999999999654
Q ss_pred hhhH---HHHHHHHHHhccc
Q 007280 513 MSLA---RPLTELMQEANQE 529 (609)
Q Consensus 513 ~~~~---~~l~~~l~~~~q~ 529 (609)
.+.+ -.+.++++...++
T Consensus 546 ~~~~~~~~q~PEilR~pL~~ 565 (924)
T KOG0920|consen 546 YEKLMLAYQLPEILRTPLEE 565 (924)
T ss_pred hhhcccccCChHHHhChHHH
Confidence 3322 2355555544433
No 102
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=2.2e-26 Score=215.81 Aligned_cols=168 Identities=33% Similarity=0.563 Sum_probs=144.0
Q ss_pred CHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhc
Q 007280 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (609)
Q Consensus 169 t~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~ 248 (609)
||+|.++++.+.+++++++++|||+|||+++++|++..+.+.+. ..+||++|+++|+.|+.+++.++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~-----------~~~lii~P~~~l~~q~~~~~~~~~~ 69 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKD-----------ARVLIIVPTRALAEQQFERLRKFFS 69 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSS-----------SEEEEEESSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCC-----------ceEEEEeeccccccccccccccccc
Confidence 79999999999999999999999999999999999988876521 1499999999999999999999988
Q ss_pred cCCeEEEEEECCcChH-HHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCC
Q 007280 249 QTGVKVVVAYGGAPIN-QQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM 327 (609)
Q Consensus 249 ~~~i~~~~~~gg~~~~-~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~ 327 (609)
...+++..++++.... .....+..+++|+|+||++|.+++......+.++++||+||+|.+.+..|...+..|+..+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 70 NTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp TTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 8888999999998866 344445567999999999999999986667778999999999999998888899999888743
Q ss_pred CCCCCceEEEEEeeccHHHHHH
Q 007280 328 PPPGMRQTMLFSATFPKEIQRL 349 (609)
Q Consensus 328 ~~~~~~q~il~SAT~~~~~~~l 349 (609)
. ...|++++|||+++.++.+
T Consensus 150 ~--~~~~~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 150 F--KNIQIILLSATLPSNVEKL 169 (169)
T ss_dssp T--TTSEEEEEESSSTHHHHHH
T ss_pred C--CCCcEEEEeeCCChhHhhC
Confidence 2 2578999999999776653
No 103
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.94 E-value=3e-26 Score=241.70 Aligned_cols=309 Identities=17% Similarity=0.221 Sum_probs=214.8
Q ss_pred HHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH-hhcc
Q 007280 171 VQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK-FSYQ 249 (609)
Q Consensus 171 iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~-~~~~ 249 (609)
+-.+.+..+.+++-+||.++||||||+ .+| +.+.+.+..... .+.|..|+|.-|..++..+.. ..-.
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKST--Qip--QyL~eaG~~~~g--------~I~~TQPRRVAavslA~RVAeE~~~~ 122 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKST--QIP--QYLAEAGFASSG--------KIACTQPRRVAAVSLAKRVAEEMGCQ 122 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCccc--cHh--HHHHhcccccCC--------cEEeecCchHHHHHHHHHHHHHhCCC
Confidence 445677777888999999999999999 444 445555543321 289999999988888655433 2222
Q ss_pred CCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchh-hhhcCCHHHHHHHHHHcCCC
Q 007280 250 TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-MLDMGFEPQIRKIVQQMDMP 328 (609)
Q Consensus 250 ~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~-~l~~gf~~~i~~i~~~l~~~ 328 (609)
.|-.|...+ ..+.. ......|.+.|.|.|++.+..+.. |+.+++|||||||. -+. .+.+.-+++.+-..
T Consensus 123 lG~~VGY~I----RFed~--ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~---TDiLlGlLKki~~~ 192 (674)
T KOG0922|consen 123 LGEEVGYTI----RFEDS--TSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLH---TDILLGLLKKILKK 192 (674)
T ss_pred cCceeeeEE----Eeccc--CCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhH---HHHHHHHHHHHHhc
Confidence 222222111 11110 112368999999999998887765 89999999999995 221 12233333333211
Q ss_pred CCCCceEEEEEeeccHHHHHHHHHhhcC-cEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceE
Q 007280 329 PPGMRQTMLFSATFPKEIQRLASDFLAN-YIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALT 407 (609)
Q Consensus 329 ~~~~~q~il~SAT~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~ 407 (609)
.++.++|+||||+.. . ....|+.. +++...++.... . +.+. ...-.+++-+.+...+.-+...+.+-+
T Consensus 193 -R~~LklIimSATlda--~-kfS~yF~~a~i~~i~GR~fPV----e--i~y~-~~p~~dYv~a~~~tv~~Ih~~E~~GDI 261 (674)
T KOG0922|consen 193 -RPDLKLIIMSATLDA--E-KFSEYFNNAPILTIPGRTFPV----E--ILYL-KEPTADYVDAALITVIQIHLTEPPGDI 261 (674)
T ss_pred -CCCceEEEEeeeecH--H-HHHHHhcCCceEeecCCCCce----e--EEec-cCCchhhHHHHHHHHHHHHccCCCCCE
Confidence 455789999999974 2 34444444 666555443321 1 1111 133344555555555444444557779
Q ss_pred EEEecchhhHHHHHHHHHhC------CC--CcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEc
Q 007280 408 LVFVETKKGADALEHWLYMN------GF--PATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNF 479 (609)
Q Consensus 408 lVF~~t~~~~~~l~~~L~~~------~~--~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~ 479 (609)
|||....++++.+++.|.+. +. -+.++||.|+.+++.++++.-..|..+|++||+++++.|.||.+.+||+-
T Consensus 262 LvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDs 341 (674)
T KOG0922|consen 262 LVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDS 341 (674)
T ss_pred EEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcC
Confidence 99999999999999999764 11 24679999999999999999999999999999999999999999999954
Q ss_pred CC------------------CCCHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 480 DL------------------PNDIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 480 d~------------------p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
++ |-|.++-.||.|||||. .+|+|+-+|++++.
T Consensus 342 G~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 342 GFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred CceEEEeeccccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH
Confidence 43 55888899999999999 58999999997654
No 104
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=5.2e-25 Score=246.87 Aligned_cols=322 Identities=22% Similarity=0.267 Sum_probs=227.7
Q ss_pred HHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHH
Q 007280 161 RRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (609)
Q Consensus 161 ~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~ 240 (609)
...+| .|-++|++++.+|..+..+++|||||+|||++...++...+.... ++++++|.++|.+|.+
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q-------------rviYTsPIKALsNQKy 179 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-------------RVIYTSPIKALSNQKY 179 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-------------ceEeccchhhhhhhHH
Confidence 34455 788999999999999999999999999999998887765554432 2999999999999998
Q ss_pred HHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHH
Q 007280 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK 320 (609)
Q Consensus 241 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~ 320 (609)
.++........-.+.+++|+.++ ..++.++|+|.+.|.++|.++...+..+.+|||||+|.|.|......++.
T Consensus 180 rdl~~~fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE 252 (1041)
T COG4581 180 RDLLAKFGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEE 252 (1041)
T ss_pred HHHHHHhhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHH
Confidence 88765422111112445555543 34578999999999999999888899999999999999999998899999
Q ss_pred HHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhh---cCcEEEEecccCCccccee------EEEEEEeccch-----HH
Q 007280 321 IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL---ANYIFLAVGRVGSSTDLIV------QRVEFVHESDK-----RS 386 (609)
Q Consensus 321 i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l---~~~~~~~~~~~~~~~~~i~------q~~~~~~~~~k-----~~ 386 (609)
++..+ |...++|+||||+|+. +++..++- ..++.+..... ...+... ..+..++...+ ..
T Consensus 253 ~Ii~l----P~~v~~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~~-RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~ 326 (1041)
T COG4581 253 VIILL----PDHVRFVFLSATVPNA-EEFAEWIQRVHSQPIHVVSTEH-RPVPLEHFVYVGKGLFDLVDEKKKFNAENFP 326 (1041)
T ss_pred HHHhc----CCCCcEEEEeCCCCCH-HHHHHHHHhccCCCeEEEeecC-CCCCeEEEEecCCceeeeecccccchhhcch
Confidence 99998 8888999999999765 33444433 23333332211 1111110 00111111111 00
Q ss_pred HHHHHHH---HH-Hh-------------------------------cCcCCCCceEEEEecchhhHHHHHHHHHhC----
Q 007280 387 HLMDLLH---AQ-VA-------------------------------NGVHGKQALTLVFVETKKGADALEHWLYMN---- 427 (609)
Q Consensus 387 ~l~~~l~---~~-~~-------------------------------~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~---- 427 (609)
.....+. .. .. .-....-.++|+|+-+++.|+.++..|...
T Consensus 327 ~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~ 406 (1041)
T COG4581 327 SANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVL 406 (1041)
T ss_pred hhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhccccccc
Confidence 0000110 00 00 000112457999999999999998877411
Q ss_pred ------------------------CCC-------------cEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCC
Q 007280 428 ------------------------GFP-------------ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDI 470 (609)
Q Consensus 428 ------------------------~~~-------------~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDi 470 (609)
+++ +..+|++|-+..++.+...|..|-.+||+||.+++.|+|+
T Consensus 407 ~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNm 486 (1041)
T COG4581 407 TEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINM 486 (1041)
T ss_pred CCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCC
Confidence 222 2357999999999999999999999999999999999999
Q ss_pred CCccEEE----EcC----CCCCHHHHHHHhhhcccCCC--CceEEEEEc
Q 007280 471 PHVAHVV----NFD----LPNDIDDYVHRIGRTGRAGK--SGLATAFFN 509 (609)
Q Consensus 471 p~v~~VI----~~d----~p~s~~~y~QriGRagR~g~--~G~~~~f~~ 509 (609)
|.-++|+ .+| .+-+..+|.|+.|||||.|. .|.+++.-.
T Consensus 487 Partvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 487 PARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred cccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 9866665 222 23468999999999999887 677777744
No 105
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=1.8e-25 Score=243.14 Aligned_cols=345 Identities=19% Similarity=0.248 Sum_probs=248.3
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHH--hhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEE
Q 007280 151 DLGEALNLNIRRCKYVKPTPVQRHAI--PISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI 228 (609)
Q Consensus 151 ~l~~~l~~~i~~~~~~~pt~iQ~~~i--~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Li 228 (609)
.++.......+..+..+++.+|.+|+ |.+++++++|..+||+.|||+++-+-++..++.-.. .++.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr------------~~ll 274 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR------------NVLL 274 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh------------ceeE
Confidence 34444444455667889999999999 678899999999999999999999888887775432 1899
Q ss_pred EcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc--cccccceEEEEeccc
Q 007280 229 LAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA--RVSLQMIRYLALDEA 306 (609)
Q Consensus 229 l~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~--~~~l~~i~~lVlDEa 306 (609)
+.|-...+..-.+.+..|....|+.+...+|..+.... .+..+|.|||.++-..+++.- .-.+..+.+||+||.
T Consensus 275 ilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdEl 350 (1008)
T KOG0950|consen 275 ILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDEL 350 (1008)
T ss_pred ecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeee
Confidence 99998888888888888888889999888866553322 223689999999865554431 123677899999999
Q ss_pred hhhhhcCCHHHHHHHHHHcCCC-CCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchH
Q 007280 307 DRMLDMGFEPQIRKIVQQMDMP-PPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKR 385 (609)
Q Consensus 307 h~~l~~gf~~~i~~i~~~l~~~-~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~ 385 (609)
|.+.|.+....++.++.++... .....|+|.||||+++. .++..|+...+...-.+.....+.+.--..+.... +.
T Consensus 351 hmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~-r~ 427 (1008)
T KOG0950|consen 351 HMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS-RN 427 (1008)
T ss_pred eeeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccch-hh
Confidence 9999999888888887765322 12236899999999873 45556665444433222222222221111111111 22
Q ss_pred HH-------------------HHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHh--------------------
Q 007280 386 SH-------------------LMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYM-------------------- 426 (609)
Q Consensus 386 ~~-------------------l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~-------------------- 426 (609)
.. +..+..+... .+..+||||++++.|+.++..+..
T Consensus 428 ~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~-----e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~ 502 (1008)
T KOG0950|consen 428 KVLREIANLYSSNLGDEDPDHLVGLCTETAP-----EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSI 502 (1008)
T ss_pred HHHHHhhhhhhhhcccCCCcceeeehhhhhh-----cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHH
Confidence 11 2222222221 245699999999999998866531
Q ss_pred ------------------CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCC----CCC
Q 007280 427 ------------------NGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDL----PND 484 (609)
Q Consensus 427 ------------------~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~----p~s 484 (609)
..+.++.+|.+++.++|+.+...|+.|...||+||+.++.|++.|..+++|-.-+ ..+
T Consensus 503 s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~ 582 (1008)
T KOG0950|consen 503 SNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLT 582 (1008)
T ss_pred HhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhh
Confidence 0245667899999999999999999999999999999999999999998885443 347
Q ss_pred HHHHHHHhhhcccCCC--CceEEEEEcCCChhhHHHH
Q 007280 485 IDDYVHRIGRTGRAGK--SGLATAFFNENNMSLARPL 519 (609)
Q Consensus 485 ~~~y~QriGRagR~g~--~G~~~~f~~~~~~~~~~~l 519 (609)
.-+|.||+|||||+|- .|.+++.+...+......|
T Consensus 583 ~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 583 RLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred hhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 8899999999999976 7899999998887655543
No 106
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=3e-25 Score=231.72 Aligned_cols=308 Identities=18% Similarity=0.217 Sum_probs=214.7
Q ss_pred HHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccC
Q 007280 171 VQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT 250 (609)
Q Consensus 171 iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~ 250 (609)
++.+.+..|..++.+||.++||||||.. +-+.|++.++... -.+-|..|+|.-|..++..+.. ..
T Consensus 360 ~R~~ll~~ir~n~vvvivgETGSGKTTQ----l~QyL~edGY~~~--------GmIGcTQPRRvAAiSVAkrVa~---EM 424 (1042)
T KOG0924|consen 360 CRDQLLSVIRENQVVVIVGETGSGKTTQ----LAQYLYEDGYADN--------GMIGCTQPRRVAAISVAKRVAE---EM 424 (1042)
T ss_pred HHHHHHHHHhhCcEEEEEecCCCCchhh----hHHHHHhcccccC--------CeeeecCchHHHHHHHHHHHHH---Hh
Confidence 3445555666788899999999999995 4456777776543 2478889999999988655443 23
Q ss_pred CeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchh-hhhcCCHHHHHHHHHHcCCCC
Q 007280 251 GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-MLDMGFEPQIRKIVQQMDMPP 329 (609)
Q Consensus 251 ~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~-~l~~gf~~~i~~i~~~l~~~~ 329 (609)
++.....+|.....+.... ....|-++|.|.|+.-..... .|..+++||+||||. -++....--+.+.+..-
T Consensus 425 ~~~lG~~VGYsIRFEdvT~--~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~lar---- 497 (1042)
T KOG0924|consen 425 GVTLGDTVGYSIRFEDVTS--EDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR---- 497 (1042)
T ss_pred CCccccccceEEEeeecCC--CceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHh----
Confidence 3332222332222222111 236799999999987665544 388899999999995 33222111222222222
Q ss_pred CCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEE
Q 007280 330 PGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLV 409 (609)
Q Consensus 330 ~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lV 409 (609)
..+.++|.+|||+.. +.+...|-..+.+...++..... .+.....-.+++-..++....-+.....+-+||
T Consensus 498 RrdlKliVtSATm~a--~kf~nfFgn~p~f~IpGRTyPV~-------~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilI 568 (1042)
T KOG0924|consen 498 RRDLKLIVTSATMDA--QKFSNFFGNCPQFTIPGRTYPVE-------IMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILI 568 (1042)
T ss_pred hccceEEEeeccccH--HHHHHHhCCCceeeecCCccceE-------EEeccCchHHHHHHHHhhheEeeccCCCCCEEE
Confidence 346789999999854 56666555577776655443211 122233344555566666665555566678999
Q ss_pred EecchhhHHHHHHHHHh----C------CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEc
Q 007280 410 FVETKKGADALEHWLYM----N------GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNF 479 (609)
Q Consensus 410 F~~t~~~~~~l~~~L~~----~------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~ 479 (609)
|....+.++..+..+.. . ++.+.+|++.|++.-+.+++..-..|..++||||++|++.|.||++.+||..
T Consensus 569 fmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~ 648 (1042)
T KOG0924|consen 569 FMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDT 648 (1042)
T ss_pred ecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEec
Confidence 99988877766555532 1 5778899999999999999999999999999999999999999999999965
Q ss_pred CC------------------CCCHHHHHHHhhhcccCCCCceEEEEEcC
Q 007280 480 DL------------------PNDIDDYVHRIGRTGRAGKSGLATAFFNE 510 (609)
Q Consensus 480 d~------------------p~s~~~y~QriGRagR~g~~G~~~~f~~~ 510 (609)
++ |-|.++--||.|||||.| +|.|+-+|++
T Consensus 649 Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 649 GYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred CceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 44 567788889999999995 9999999987
No 107
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=3.9e-25 Score=230.59 Aligned_cols=315 Identities=18% Similarity=0.200 Sum_probs=221.8
Q ss_pred CCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHH
Q 007280 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (609)
Q Consensus 164 ~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~ 243 (609)
+....+++-.+.+.++..++.+||.++||||||. .|| +.|.+.+..+.. -.+-|..|+|.-|+.++..+
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiP--QyL~EaGytk~g-------k~IgcTQPRRVAAmSVAaRV 330 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIP--QYLYEAGYTKGG-------KKIGCTQPRRVAAMSVAARV 330 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--ccc--HHHHhcccccCC-------ceEeecCcchHHHHHHHHHH
Confidence 3445677888899999999999999999999999 455 446666554322 23788999999999986544
Q ss_pred HHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchh-hhhcCCHHHHHHHH
Q 007280 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-MLDMGFEPQIRKIV 322 (609)
Q Consensus 244 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~-~l~~gf~~~i~~i~ 322 (609)
.+ ..+++...-+|.....+... ....-|-++|.|+|+.-+.... .|.++++||+||||. -+.. +.+..++
T Consensus 331 A~---EMgvkLG~eVGYsIRFEdcT--SekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~T---DILfgLv 401 (902)
T KOG0923|consen 331 AE---EMGVKLGHEVGYSIRFEDCT--SEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHT---DILFGLV 401 (902)
T ss_pred HH---HhCcccccccceEEEecccc--CcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhh---hHHHHHH
Confidence 32 22333322222221111111 1235789999999998776654 489999999999994 3322 2223333
Q ss_pred HHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCC
Q 007280 323 QQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHG 402 (609)
Q Consensus 323 ~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 402 (609)
..+... .++.++|+.|||+.. +++...|-..++|...++..... .+.......+++-..+.....-+...
T Consensus 402 KDIar~-RpdLKllIsSAT~DA--ekFS~fFDdapIF~iPGRRyPVd-------i~Yt~~PEAdYldAai~tVlqIH~tq 471 (902)
T KOG0923|consen 402 KDIARF-RPDLKLLISSATMDA--EKFSAFFDDAPIFRIPGRRYPVD-------IFYTKAPEADYLDAAIVTVLQIHLTQ 471 (902)
T ss_pred HHHHhh-CCcceEEeeccccCH--HHHHHhccCCcEEeccCccccee-------eecccCCchhHHHHHHhhheeeEecc
Confidence 333221 467899999999865 34444444557776655443211 12223333445555555555544445
Q ss_pred CCceEEEEecchhhHHHHHHHHHhC---------CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCc
Q 007280 403 KQALTLVFVETKKGADALEHWLYMN---------GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV 473 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~~---------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v 473 (609)
+.+-+|||....++++...+.|... .+-+.+||+.++++.+..|++--..|..+|++||++|++.|.|++|
T Consensus 472 p~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI 551 (902)
T KOG0923|consen 472 PLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGI 551 (902)
T ss_pred CCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCe
Confidence 5677999999999998888877643 3567789999999999999999999999999999999999999999
Q ss_pred cEEEEcCC------------------CCCHHHHHHHhhhcccCCCCceEEEEEc
Q 007280 474 AHVVNFDL------------------PNDIDDYVHRIGRTGRAGKSGLATAFFN 509 (609)
Q Consensus 474 ~~VI~~d~------------------p~s~~~y~QriGRagR~g~~G~~~~f~~ 509 (609)
.+||.-++ |-+.++-.||.|||||.| +|+|+-+|+
T Consensus 552 ~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 552 KYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred EEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeec
Confidence 99996443 457788899999999996 999999998
No 108
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.92 E-value=3.1e-23 Score=219.89 Aligned_cols=318 Identities=21% Similarity=0.313 Sum_probs=221.3
Q ss_pred CCCHHHHHHHhhHh----CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~----~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
.++++|.+.++++. ++-+.|+..++|.|||+. .|.+|.+|..-.....| .||+||...|.+ |..+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~~GP---------fLVi~P~StL~N-W~~E 235 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGIPGP---------FLVIAPKSTLDN-WMNE 235 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCCCCC---------eEEEeeHhhHHH-HHHH
Confidence 58999999998775 467899999999999985 55566666653332222 799999988855 5688
Q ss_pred HHHhhccCCeEEEEEECCcChHHHHHH-H--hcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHH
Q 007280 243 AKKFSYQTGVKVVVAYGGAPINQQLRE-L--ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIR 319 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~~~~~~~-l--~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~ 319 (609)
+++|+. .+++++++|....+..+.. + ....+|+|+|++..+.- +..+.--.++|||+|||||+-... ..+.
T Consensus 236 f~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~ 309 (971)
T KOG0385|consen 236 FKRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLS 309 (971)
T ss_pred HHHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHH
Confidence 999875 4889999998754443322 1 22589999999987654 222233458999999999987753 4555
Q ss_pred HHHHHcCCCCCCCceEEEEEeec-cHHHHHHHH--HhhcCc---------------------------------------
Q 007280 320 KIVQQMDMPPPGMRQTMLFSATF-PKEIQRLAS--DFLANY--------------------------------------- 357 (609)
Q Consensus 320 ~i~~~l~~~~~~~~q~il~SAT~-~~~~~~l~~--~~l~~~--------------------------------------- 357 (609)
+++..+... ..+|+|.|+ .+++.+|-. .|+-..
T Consensus 310 ~~lr~f~~~-----nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~ 384 (971)
T KOG0385|consen 310 KILREFKTD-----NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRI 384 (971)
T ss_pred HHHHHhccc-----ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHH
Confidence 677766332 247777774 222211100 000000
Q ss_pred -------------EEEEeccc------------------CCcc------------------------------cceeEEE
Q 007280 358 -------------IFLAVGRV------------------GSST------------------------------DLIVQRV 376 (609)
Q Consensus 358 -------------~~~~~~~~------------------~~~~------------------------------~~i~q~~ 376 (609)
+.+.++-. .... +.....-
T Consensus 385 K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttde 464 (971)
T KOG0385|consen 385 KSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 464 (971)
T ss_pred HHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcch
Confidence 00000000 0000 0000000
Q ss_pred EEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCC--
Q 007280 377 EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK-- 454 (609)
Q Consensus 377 ~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~-- 454 (609)
+.+....|...|-.+|..... .+.++|||.+..+..+.|.+++...+|....|.|.++.++|...++.|....
T Consensus 465 hLv~nSGKm~vLDkLL~~Lk~-----~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~ 539 (971)
T KOG0385|consen 465 HLVTNSGKMLVLDKLLPKLKE-----QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSE 539 (971)
T ss_pred HHHhcCcceehHHHHHHHHHh-----CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcc
Confidence 112233444455555555443 3889999999999999999999999999999999999999999999998755
Q ss_pred -CcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEE--EcCC
Q 007280 455 -TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF--FNEN 511 (609)
Q Consensus 455 -~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f--~~~~ 511 (609)
.-+|++|.+.+.|||+..+++||.||-.||+..-.|..-||+|.||+..+.+| ++++
T Consensus 540 ~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 540 KFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred eEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 33689999999999999999999999999999999999999999997765554 5544
No 109
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=5.1e-23 Score=233.60 Aligned_cols=327 Identities=20% Similarity=0.195 Sum_probs=212.1
Q ss_pred CCHHHHHHHhhHhC---CC-CceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHH
Q 007280 168 PTPVQRHAIPISIG---GR-DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (609)
Q Consensus 168 pt~iQ~~~i~~i~~---~~-d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~ 243 (609)
+++.|..++..++. .. .+++.||||+|||.+.+++++..+.... ...++++.+.|++.+++++++.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~---------~~~~r~i~vlP~~t~ie~~~~r~ 266 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI---------KLKSRVIYVLPFRTIIEDMYRRA 266 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc---------cccceEEEEccHHHHHHHHHHHH
Confidence 48899999987774 34 6789999999999999998887665531 01245999999999999999999
Q ss_pred HHhhccCCeEEEEEECCcChHHHHHH-----H---------hcCCCEEEeChHHHHHHHHc-cccc-c--cceEEEEecc
Q 007280 244 KKFSYQTGVKVVVAYGGAPINQQLRE-----L---------ERGVDILVATPGRLVDLLER-ARVS-L--QMIRYLALDE 305 (609)
Q Consensus 244 ~~~~~~~~i~~~~~~gg~~~~~~~~~-----l---------~~~~~IlV~Tpg~L~~~l~~-~~~~-l--~~i~~lVlDE 305 (609)
+++.....+.....++.......... . ..-..+.++||-.+...... .... + -..+++||||
T Consensus 267 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 267 KEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred HhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 98755443333322333222111110 0 00135556665554442211 1111 1 2247899999
Q ss_pred chhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCC-cccceeEEEE-EEeccc
Q 007280 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGS-STDLIVQRVE-FVHESD 383 (609)
Q Consensus 306 ah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~-~~~~i~q~~~-~~~~~~ 383 (609)
+|.+.+......+..++..+. .....+|+||||+|+...+.+...+.+........... .......... .+....
T Consensus 347 ~h~~~~~~~~~~l~~~i~~l~---~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 423 (733)
T COG1203 347 VHLYADETMLAALLALLEALA---EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVED 423 (733)
T ss_pred HHhhcccchHHHHHHHHHHHH---hCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhh
Confidence 998776533444455555443 22457999999999999888887776544333221100 0000000000 000001
Q ss_pred hH-HHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhh----cCCCcEE
Q 007280 384 KR-SHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFK----SGKTPIL 458 (609)
Q Consensus 384 k~-~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~----~g~~~IL 458 (609)
.. ..+...+.... .+..+++|.|||++.|..++..|+..+..+..+||.+...+|.+.++.+. .+...|+
T Consensus 424 ~~~~~~~~~~~~~~-----~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~Iv 498 (733)
T COG1203 424 GPQEELIELISEEV-----KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIV 498 (733)
T ss_pred hhhHhhhhcchhhh-----ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEE
Confidence 00 11222222222 23778999999999999999999998878999999999999999888654 5678899
Q ss_pred EEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCC--CCceEEEEEcCCChh
Q 007280 459 VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG--KSGLATAFFNENNMS 514 (609)
Q Consensus 459 VaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g--~~G~~~~f~~~~~~~ 514 (609)
|||+|++.||||. .+++|-= +..++..+||+||++|-| ..|.++++...+...
T Consensus 499 VaTQVIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~ 553 (733)
T COG1203 499 VATQVIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGP 553 (733)
T ss_pred EEeeEEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCC
Confidence 9999999999994 6665532 334899999999999999 578888887654433
No 110
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.3e-23 Score=219.05 Aligned_cols=311 Identities=19% Similarity=0.233 Sum_probs=200.3
Q ss_pred HHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH-Hhhc-cCCe
Q 007280 175 AIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK-KFSY-QTGV 252 (609)
Q Consensus 175 ~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~-~~~~-~~~i 252 (609)
++.+|..+--+|||++||||||+ .+|.+ |++.+...... ...-.+=|..|+|.-|..+++.+. .+.. ...+
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTT--QvPQF--LYEAGf~s~~~---~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eV 336 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTT--QVPQF--LYEAGFASEQS---SSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEV 336 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccc--cchHH--HHHcccCCccC---CCCCeeeecCchHHHHHHHHHHHHHHhccCccce
Confidence 33445556678999999999999 45543 55555443211 112257889999998877755432 3322 2223
Q ss_pred EEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhh-hc----CCHHHHHHHHHHcCC
Q 007280 253 KVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML-DM----GFEPQIRKIVQQMDM 327 (609)
Q Consensus 253 ~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l-~~----gf~~~i~~i~~~l~~ 327 (609)
...+-+.++. .....|.++|.|.|+.-++++.+ |..++.|||||||.=. .. |....|-.+-.....
T Consensus 337 sYqIRfd~ti--------~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~k 407 (1172)
T KOG0926|consen 337 SYQIRFDGTI--------GEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYK 407 (1172)
T ss_pred eEEEEecccc--------CCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhh
Confidence 3444444442 22468999999999999888744 8999999999999511 10 111112222111110
Q ss_pred --CCCCCceEEEEEeeccHHHHHHH---HHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCC
Q 007280 328 --PPPGMRQTMLFSATFPKEIQRLA---SDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHG 402 (609)
Q Consensus 328 --~~~~~~q~il~SAT~~~~~~~l~---~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 402 (609)
..-...++|+||||+.-. ++. ..|-..+..+.+.... ..-.+++ ......+++.+...+...-+.+-
T Consensus 408 e~~~~kpLKLIIMSATLRVs--DFtenk~LFpi~pPlikVdARQ-----fPVsIHF-~krT~~DYi~eAfrKtc~IH~kL 479 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATLRVS--DFTENKRLFPIPPPLIKVDARQ-----FPVSIHF-NKRTPDDYIAEAFRKTCKIHKKL 479 (1172)
T ss_pred hhcccCceeEEEEeeeEEec--ccccCceecCCCCceeeeeccc-----CceEEEe-ccCCCchHHHHHHHHHHHHhhcC
Confidence 112346799999998421 111 1111112222222111 1111122 22333466777776666655556
Q ss_pred CCceEEEEecchhhHHHHHHHHHhC-------------------------------------------------------
Q 007280 403 KQALTLVFVETKKGADALEHWLYMN------------------------------------------------------- 427 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~~------------------------------------------------------- 427 (609)
+.+-+|||+....+++.|++.|+..
T Consensus 480 P~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~ 559 (1172)
T KOG0926|consen 480 PPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDS 559 (1172)
T ss_pred CCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcc
Confidence 6888999999999999999999610
Q ss_pred --------------------------------------------CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccc
Q 007280 428 --------------------------------------------GFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 463 (609)
Q Consensus 428 --------------------------------------------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v 463 (609)
-+-|.++++-++..++.++++.-..|..-++|||+|
T Consensus 560 ~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNV 639 (1172)
T KOG0926|consen 560 GFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNV 639 (1172)
T ss_pred cchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccc
Confidence 123456788888999999999999999999999999
Q ss_pred cccCCCCCCccEEEE--------cCCCCC----------HHHHHHHhhhcccCCCCceEEEEEcC
Q 007280 464 AARGLDIPHVAHVVN--------FDLPND----------IDDYVHRIGRTGRAGKSGLATAFFNE 510 (609)
Q Consensus 464 ~~~GlDip~v~~VI~--------~d~p~s----------~~~y~QriGRagR~g~~G~~~~f~~~ 510 (609)
|++.|.||+|.+||. ||--.. .++--||.|||||.| +|+||-+|+.
T Consensus 640 AETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 640 AETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred hhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 999999999999995 444333 344459999999996 8999999974
No 111
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2.8e-22 Score=222.65 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=118.8
Q ss_pred eccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEE
Q 007280 380 HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 459 (609)
Q Consensus 380 ~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILV 459 (609)
....|...+.+.+..... ...++||||+|++.++.|+.+|...++++..||+ .+.+|+..+..|..+...|+|
T Consensus 579 t~~eK~~Ali~~I~~~~~-----~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtI 651 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQK-----KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTI 651 (1025)
T ss_pred CHHHHHHHHHHHHHHHhh-----CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEE
Confidence 344577777777765432 3778999999999999999999999999999997 688999999999999999999
Q ss_pred EccccccCCCCC---Ccc-----EEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhH----HHHHHHHHHhc
Q 007280 460 ATDVAARGLDIP---HVA-----HVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLA----RPLTELMQEAN 527 (609)
Q Consensus 460 aT~v~~~GlDip---~v~-----~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~----~~l~~~l~~~~ 527 (609)
||++|+||+||+ .|. +||+++.|.+...|+||+|||||.|.+|.+++|++.+|.-+. +.+.+++....
T Consensus 652 ATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~ 731 (1025)
T PRK12900 652 ATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRLG 731 (1025)
T ss_pred eccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHcC
Confidence 999999999999 554 459999999999999999999999999999999998764321 23555555444
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=3.6e-21 Score=214.03 Aligned_cols=135 Identities=24% Similarity=0.383 Sum_probs=120.1
Q ss_pred cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEc
Q 007280 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVAT 461 (609)
Q Consensus 382 ~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT 461 (609)
..+...|++.|..... +..++||||++++.++.|+++|...++++..+|+++++.+|.++++.|+.|++.|||||
T Consensus 425 ~~qi~~Ll~eI~~~~~-----~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t 499 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVA-----RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI 499 (655)
T ss_pred cchHHHHHHHHHHHHc-----CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc
Confidence 3455667777766543 26789999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEcC-----CCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHH
Q 007280 462 DVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTEL 522 (609)
Q Consensus 462 ~v~~~GlDip~v~~VI~~d-----~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~ 522 (609)
+++++|+|+|++++||++| .|.+...|+||+|||||. ..|.|++|++..+..+...|.+.
T Consensus 500 ~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 500 NLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred ChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 9999999999999999998 799999999999999998 78999999998777666665554
No 113
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=7.9e-22 Score=210.37 Aligned_cols=314 Identities=20% Similarity=0.243 Sum_probs=212.7
Q ss_pred CCCHHHHHHHhhHh----CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~----~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
++.|+|++++.++. ++..-|+-.++|.|||.. ++..|..|........ .+|||||. .|..||..|
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~~~---------paLIVCP~-Tii~qW~~E 273 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKLTK---------PALIVCPA-TIIHQWMKE 273 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcccccC---------ceEEEccH-HHHHHHHHH
Confidence 56899999999876 356689999999999985 4445555554422111 19999998 567888888
Q ss_pred HHHhhccCCeEEEEEECCcCh--------HHHHHH-H----hcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhh
Q 007280 243 AKKFSYQTGVKVVVAYGGAPI--------NQQLRE-L----ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~--------~~~~~~-l----~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~ 309 (609)
+..|... ++|.++++..+. ...... + ....+|+|+|+..|.-. ...+.-..++|+||||.|++
T Consensus 274 ~~~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~I 349 (923)
T KOG0387|consen 274 FQTWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRI 349 (923)
T ss_pred HHHhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccc
Confidence 8887544 778887776552 111111 1 12457999998876422 22333456899999999998
Q ss_pred hhcCCHHHHHHHHHHcCCCCCCCceEEEEEeec-cHHHHHHHHHh--h------------cCcE-EEEeccc--------
Q 007280 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF-PKEIQRLASDF--L------------ANYI-FLAVGRV-------- 365 (609)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~-~~~~~~l~~~~--l------------~~~~-~~~~~~~-------- 365 (609)
-+.. .++...+.++. ..+.|.+|.|+ .+.+.+|-..| . .++. .|..+..
T Consensus 350 rNpn--s~islackki~-----T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv 422 (923)
T KOG0387|consen 350 RNPN--SKISLACKKIR-----TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQV 422 (923)
T ss_pred cCCc--cHHHHHHHhcc-----ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHH
Confidence 7754 45555555552 23457777774 22222221110 0 0000 0000000
Q ss_pred ---------------------------CCcccceeEEEEEE---------------------------------------
Q 007280 366 ---------------------------GSSTDLIVQRVEFV--------------------------------------- 379 (609)
Q Consensus 366 ---------------------------~~~~~~i~q~~~~~--------------------------------------- 379 (609)
....+.-...+.+|
T Consensus 423 ~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkI 502 (923)
T KOG0387|consen 423 QTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKI 502 (923)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhh
Confidence 00000001111111
Q ss_pred ------------------------eccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHH-hCCCCcEEe
Q 007280 380 ------------------------HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLY-MNGFPATTI 434 (609)
Q Consensus 380 ------------------------~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~-~~~~~~~~i 434 (609)
....|...+..+|...... +.++|+|..++.+.+.|..+|. ..++.+..+
T Consensus 503 CnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kq-----g~rvllFsqs~~mLdilE~fL~~~~~ysylRm 577 (923)
T KOG0387|consen 503 CNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQ-----GDRVLLFSQSRQMLDILESFLRRAKGYSYLRM 577 (923)
T ss_pred cCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhC-----CCEEEEehhHHHHHHHHHHHHHhcCCceEEEe
Confidence 1223445556666655433 6689999999999999999999 689999999
Q ss_pred cCccCHHHHHHHHHhhhcCCCc--EEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEE
Q 007280 435 HGDRTQQERELALRSFKSGKTP--ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF 507 (609)
Q Consensus 435 hg~~~~~~R~~~~~~F~~g~~~--ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f 507 (609)
.|..+...|..++++|.++..- +|++|.|.+-|||+..++-||.||+.||+..-.|..-||.|.||+-.+++|
T Consensus 578 DGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 578 DGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred cCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 9999999999999999977643 578899999999999999999999999999999999999999997766554
No 114
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.89 E-value=8e-21 Score=207.97 Aligned_cols=288 Identities=27% Similarity=0.413 Sum_probs=197.5
Q ss_pred HHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHH
Q 007280 160 IRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (609)
Q Consensus 160 i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi 239 (609)
+.++-..+|...|+--...++.|+.+-+.||||.|||. |.+.+-..+...+ -++++|+||+.|+.|+
T Consensus 75 F~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~kg------------kr~yii~PT~~Lv~Q~ 141 (1187)
T COG1110 75 FKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAKKG------------KRVYIIVPTTTLVRQV 141 (1187)
T ss_pred HHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHhcC------------CeEEEEecCHHHHHHH
Confidence 34443348999999888899999999999999999998 4443332332221 1399999999999999
Q ss_pred HHHHHHhhccCC-eEEEEEECCc-ChHH---HHHHHhc-CCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhc-
Q 007280 240 HVEAKKFSYQTG-VKVVVAYGGA-PINQ---QLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM- 312 (609)
Q Consensus 240 ~~~~~~~~~~~~-i~~~~~~gg~-~~~~---~~~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~- 312 (609)
++.+++|+...+ .++.++|.+. +..+ .+..+.+ +.||+|+|.+-|...++.- .--++++|++|.+|.++..
T Consensus 142 ~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 142 YERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHHhcc
Confidence 999999986655 5544434444 3333 2334444 5899999987776554431 1136899999999986643
Q ss_pred ----------CCHHH-------HHHHHHHcC--------------------CCCCCCceEEEEEeeccHH--HHHHHHHh
Q 007280 313 ----------GFEPQ-------IRKIVQQMD--------------------MPPPGMRQTMLFSATFPKE--IQRLASDF 353 (609)
Q Consensus 313 ----------gf~~~-------i~~i~~~l~--------------------~~~~~~~q~il~SAT~~~~--~~~l~~~~ 353 (609)
||.+. +..+...+. ....+.-++|..|||..+. -..+.+.+
T Consensus 220 kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReL 299 (1187)
T COG1110 220 KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFREL 299 (1187)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHH
Confidence 33332 111111111 0012345899999997432 22334443
Q ss_pred hcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecc---hhhHHHHHHHHHhCCCC
Q 007280 354 LANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVET---KKGADALEHWLYMNGFP 430 (609)
Q Consensus 354 l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t---~~~~~~l~~~L~~~~~~ 430 (609)
|. +.++.......++...+... .....+.++++.. +.-.|||++. ++.++.|+++|...|++
T Consensus 300 lg----FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~l--------G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~ 364 (1187)
T COG1110 300 LG----FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKL--------GDGGLIFVPIDYGREKAEELAEYLRSHGIN 364 (1187)
T ss_pred hC----CccCccchhhhheeeeeccC---ccHHHHHHHHHHh--------CCCeEEEEEcHHhHHHHHHHHHHHHhcCce
Confidence 32 23333344445555444333 5555666676665 3347999999 99999999999999999
Q ss_pred cEEecCccCHHHHHHHHHhhhcCCCcEEEEc----cccccCCCCCC-ccEEEEcCCC
Q 007280 431 ATTIHGDRTQQERELALRSFKSGKTPILVAT----DVAARGLDIPH-VAHVVNFDLP 482 (609)
Q Consensus 431 ~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT----~v~~~GlDip~-v~~VI~~d~p 482 (609)
+..+|+. .++.++.|..|+++|||.+ .++-||||+|. +.++|+|+.|
T Consensus 365 a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 365 AELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred EEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9999983 3778999999999999876 68899999997 7899998887
No 115
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.88 E-value=1.2e-20 Score=218.45 Aligned_cols=349 Identities=17% Similarity=0.202 Sum_probs=213.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHh----hHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEE
Q 007280 152 LGEALNLNIRRCKYVKPTPVQRHAIP----ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227 (609)
Q Consensus 152 l~~~l~~~i~~~~~~~pt~iQ~~~i~----~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~L 227 (609)
+.+.+.+.+...+|+ ++|.|.+.+. .+.+++++++.|+||+|||++|++|++..+... ..+|
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~-------------~~vv 296 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITE-------------KPVV 296 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCC-------------CeEE
Confidence 445677777778886 8899998665 455788999999999999999999998765411 1299
Q ss_pred EEcCcHHHHHHHHH-HHHHhhccCC--eEEEEEECCcChH---------------HH-----------------------
Q 007280 228 ILAPTRELSSQIHV-EAKKFSYQTG--VKVVVAYGGAPIN---------------QQ----------------------- 266 (609)
Q Consensus 228 il~Ptr~La~Qi~~-~~~~~~~~~~--i~~~~~~gg~~~~---------------~~----------------------- 266 (609)
|.+||++|..|+.. ++..+.+..+ ++++++.|....- .+
T Consensus 297 i~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el 376 (850)
T TIGR01407 297 ISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDEL 376 (850)
T ss_pred EEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhc
Confidence 99999999999865 5666654433 7777777644310 00
Q ss_pred ---------H------------------------HHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcC
Q 007280 267 ---------L------------------------RELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG 313 (609)
Q Consensus 267 ---------~------------------------~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~g 313 (609)
+ +.....++|||+...-|+..+......+....+|||||||+|.+.-
T Consensus 377 ~~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a 456 (850)
T TIGR01407 377 NLKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIA 456 (850)
T ss_pred cCCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHH
Confidence 0 0001136899999998887765443335666899999999965311
Q ss_pred -------C-----HHHHH--------------------------------------------------------------
Q 007280 314 -------F-----EPQIR-------------------------------------------------------------- 319 (609)
Q Consensus 314 -------f-----~~~i~-------------------------------------------------------------- 319 (609)
+ ...+.
T Consensus 457 ~~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 536 (850)
T TIGR01407 457 ENQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQ 536 (850)
T ss_pred HHHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 0 00000
Q ss_pred --HHHHH-----------c----------CCC-----------------------CCCCceEEEEEeeccH--HHHHHHH
Q 007280 320 --KIVQQ-----------M----------DMP-----------------------PPGMRQTMLFSATFPK--EIQRLAS 351 (609)
Q Consensus 320 --~i~~~-----------l----------~~~-----------------------~~~~~q~il~SAT~~~--~~~~l~~ 351 (609)
..+.. + ... -+....+|++|||+.. ....+.+
T Consensus 537 l~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~ 616 (850)
T TIGR01407 537 LRKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQ 616 (850)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHH
Confidence 00000 0 000 0112468899999863 2333333
Q ss_pred Hhh-cCcEEEEecccCCcccceeEEEEEEec----------cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHH
Q 007280 352 DFL-ANYIFLAVGRVGSSTDLIVQRVEFVHE----------SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADAL 420 (609)
Q Consensus 352 ~~l-~~~~~~~~~~~~~~~~~i~q~~~~~~~----------~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l 420 (609)
.+- .+..+.... .+..+...+...++.. ..-...+.+.|...... ..+++|||+++.+.++.+
T Consensus 617 ~lGl~~~~~~~~~--~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~----~~g~~LVlftS~~~l~~v 690 (850)
T TIGR01407 617 LLGLTDVHFNTIE--PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI----TSPKILVLFTSYEMLHMV 690 (850)
T ss_pred hcCCCccccceec--CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh----cCCCEEEEeCCHHHHHHH
Confidence 222 122222221 1111111122222211 01112344444443322 256799999999999999
Q ss_pred HHHHHh----CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCcc--EEEEcCCCCC----------
Q 007280 421 EHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVA--HVVNFDLPND---------- 484 (609)
Q Consensus 421 ~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~--~VI~~d~p~s---------- 484 (609)
++.|.. .++++ +..+.. ..|.+++++|++++..||++|+.+.+|||+|+.. +||...+|..
T Consensus 691 ~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~ 767 (850)
T TIGR01407 691 YDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKY 767 (850)
T ss_pred HHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHH
Confidence 999875 23332 333333 5789999999999999999999999999999865 5676666531
Q ss_pred --------------------HHHHHHHhhhcccCCCCceEEEEEcCC--ChhhHHHHHHHH
Q 007280 485 --------------------IDDYVHRIGRTGRAGKSGLATAFFNEN--NMSLARPLTELM 523 (609)
Q Consensus 485 --------------------~~~y~QriGRagR~g~~G~~~~f~~~~--~~~~~~~l~~~l 523 (609)
+..+.|.+||.-|..+..-++++++.. ...+-+.+.+.+
T Consensus 768 ~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 768 WQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred HHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhC
Confidence 123459999999987654455555543 334444554444
No 116
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.87 E-value=7.1e-21 Score=211.11 Aligned_cols=317 Identities=20% Similarity=0.261 Sum_probs=216.6
Q ss_pred CCCHHHHHHHhhHh----CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~----~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
.++.+|-+.+++++ .+.++|+..++|.|||+. .+..|..|........| .|||+|...+..+ ..+
T Consensus 370 ~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~~~gp---------flvvvplst~~~W-~~e 438 (1373)
T KOG0384|consen 370 ELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQIHGP---------FLVVVPLSTITAW-ERE 438 (1373)
T ss_pred hhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhhccCC---------eEEEeehhhhHHH-HHH
Confidence 57889999998776 578999999999999985 44456666654433222 7899999776554 566
Q ss_pred HHHhhccCCeEEEEEECCcChHHHHHHHhc---------CCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcC
Q 007280 243 AKKFSYQTGVKVVVAYGGAPINQQLRELER---------GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG 313 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~---------~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~g 313 (609)
+..++ .+++++++|....++.+++++- .+++|++|++.++.--. .+.--.+.++++||||||-+.
T Consensus 439 f~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~- 512 (1373)
T KOG0384|consen 439 FETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND- 512 (1373)
T ss_pred HHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch-
Confidence 66664 7899999999888887777642 37999999988753211 122234688999999998753
Q ss_pred CHHHHHHHHHHcCCCCCCCceEEEEEeec-cHHHHHHHHHh--hcCcEE------------------------------E
Q 007280 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATF-PKEIQRLASDF--LANYIF------------------------------L 360 (609)
Q Consensus 314 f~~~i~~i~~~l~~~~~~~~q~il~SAT~-~~~~~~l~~~~--l~~~~~------------------------------~ 360 (609)
...+...+..+.+. ..|++|.|+ .+.+.+|...+ +..-.| -
T Consensus 513 -~~~l~~~l~~f~~~-----~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lR 586 (1373)
T KOG0384|consen 513 -ESKLYESLNQFKMN-----HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLR 586 (1373)
T ss_pred -HHHHHHHHHHhccc-----ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHH
Confidence 34455555555432 357777774 33344433211 100000 0
Q ss_pred Ee-cccC-CcccceeEEEEEE-------------------------------------------------ecc-------
Q 007280 361 AV-GRVG-SSTDLIVQRVEFV-------------------------------------------------HES------- 382 (609)
Q Consensus 361 ~~-~~~~-~~~~~i~q~~~~~-------------------------------------------------~~~------- 382 (609)
.+ ..+. +......+.+.+- ..+
T Consensus 587 r~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~ 666 (1373)
T KOG0384|consen 587 RLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDF 666 (1373)
T ss_pred HHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhh
Confidence 00 0000 0011111111110 000
Q ss_pred ----------------chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHH
Q 007280 383 ----------------DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELA 446 (609)
Q Consensus 383 ----------------~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~ 446 (609)
.|...|-.+|... ...+.+||||.+.++..+.|+++|...+|+.-.|.|.+..+.|+++
T Consensus 667 ~~~~~d~~L~~lI~sSGKlVLLDKLL~rL-----k~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~A 741 (1373)
T KOG0384|consen 667 RDKMRDEALQALIQSSGKLVLLDKLLPRL-----KEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQA 741 (1373)
T ss_pred hhcchHHHHHHHHHhcCcEEeHHHHHHHH-----hcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHH
Confidence 0111111122221 2347899999999999999999999999999999999999999999
Q ss_pred HHhhhcC---CCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCce--EEEEEcCC
Q 007280 447 LRSFKSG---KTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL--ATAFFNEN 511 (609)
Q Consensus 447 ~~~F~~g---~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~--~~~f~~~~ 511 (609)
++.|..- .+.+|+||.+.+-|||+..+++||.||-.||+.+-+|..-||+|.||+-. +|-|++.+
T Consensus 742 IDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 742 IDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred HHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 9999864 45589999999999999999999999999999999999999999999765 45566654
No 117
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.87 E-value=3.7e-20 Score=190.28 Aligned_cols=170 Identities=24% Similarity=0.299 Sum_probs=132.2
Q ss_pred ceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEec
Q 007280 333 RQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVE 412 (609)
Q Consensus 333 ~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~ 412 (609)
.|+|..|||+.+.-.+... ...+...+...+...+ .+++-+.....+.|+.-+...... +.++||-+-
T Consensus 387 ~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP----~ievRp~~~QvdDL~~EI~~r~~~-----~eRvLVTtL 454 (663)
T COG0556 387 PQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDP----EIEVRPTKGQVDDLLSEIRKRVAK-----NERVLVTTL 454 (663)
T ss_pred CCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCC----ceeeecCCCcHHHHHHHHHHHHhc-----CCeEEEEee
Confidence 4899999997553222221 1122222222222222 234445556667777777776644 678999999
Q ss_pred chhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCC-----CCCHHH
Q 007280 413 TKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDL-----PNDIDD 487 (609)
Q Consensus 413 t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~-----p~s~~~ 487 (609)
|+++++.|.++|.+.++++..+|++...-+|.+++++++.|.++|||..+.+-+|||+|.|.+|..+|. ..|-..
T Consensus 455 TKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~S 534 (663)
T COG0556 455 TKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 534 (663)
T ss_pred hHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999886 458899
Q ss_pred HHHHhhhcccCCCCceEEEEEcCCChhh
Q 007280 488 YVHRIGRTGRAGKSGLATAFFNENNMSL 515 (609)
Q Consensus 488 y~QriGRagR~g~~G~~~~f~~~~~~~~ 515 (609)
.+|-||||+|- -.|+++++-+.-..++
T Consensus 535 LIQtIGRAARN-~~GkvIlYAD~iT~sM 561 (663)
T COG0556 535 LIQTIGRAARN-VNGKVILYADKITDSM 561 (663)
T ss_pred HHHHHHHHhhc-cCCeEEEEchhhhHHH
Confidence 99999999995 5799999877544333
No 118
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=6.1e-20 Score=205.71 Aligned_cols=147 Identities=24% Similarity=0.337 Sum_probs=125.5
Q ss_pred cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEc
Q 007280 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVAT 461 (609)
Q Consensus 382 ~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT 461 (609)
..+...|++.|...... ..++||||++++.++.|++.|...++++..+|+++++.+|..+++.|+.|+..|||||
T Consensus 429 ~~q~~~L~~~L~~~~~~-----g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t 503 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAK-----GERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI 503 (652)
T ss_pred cccHHHHHHHHHHHHhC-----CCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEe
Confidence 34556677777665432 6789999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEcCC-----CCCHHHHHHHhhhcccCCCCceEEEEEcCC---------ChhhHHHHHHHHHHhc
Q 007280 462 DVAARGLDIPHVAHVVNFDL-----PNDIDDYVHRIGRTGRAGKSGLATAFFNEN---------NMSLARPLTELMQEAN 527 (609)
Q Consensus 462 ~v~~~GlDip~v~~VI~~d~-----p~s~~~y~QriGRagR~g~~G~~~~f~~~~---------~~~~~~~l~~~l~~~~ 527 (609)
+++++|+|+|++++||++|. |.+...|+||+|||||. ..|.|++|++.. +....+.+...++...
T Consensus 504 ~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 582 (652)
T PRK05298 504 NLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEH 582 (652)
T ss_pred CHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999885 78999999999999996 799999999853 4455555666666666
Q ss_pred ccchHHH
Q 007280 528 QEVPAWL 534 (609)
Q Consensus 528 q~vp~~l 534 (609)
..+|...
T Consensus 583 ~~~~~~~ 589 (652)
T PRK05298 583 GITPKTI 589 (652)
T ss_pred CCCChhH
Confidence 6666554
No 119
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.5e-20 Score=190.45 Aligned_cols=331 Identities=15% Similarity=0.171 Sum_probs=213.0
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 144 ~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
++.|....+++...+-+++..-..-...+.+-+..+.+++-+++.++||||||...--..+...+...
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~------------ 91 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL------------ 91 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc------------
Confidence 56788888888877777665433344555666677788999999999999999842222222222221
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEe
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
-.+.+..|.|.-|.+++..+. ...++....-+|.....+.... ...-+-+||.+.|+...-.... +.++++|||
T Consensus 92 ~~v~CTQprrvaamsva~RVa---dEMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~p~-l~~y~viiL 165 (699)
T KOG0925|consen 92 TGVACTQPRRVAAMSVAQRVA---DEMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSDPL-LGRYGVIIL 165 (699)
T ss_pred cceeecCchHHHHHHHHHHHH---HHhccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhCcc-cccccEEEe
Confidence 128899999999999865443 3334444333333322211100 0122446888888776655554 889999999
Q ss_pred ccchh-hhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEecc
Q 007280 304 DEADR-MLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES 382 (609)
Q Consensus 304 DEah~-~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~ 382 (609)
||||. -+.. +.+.-+++..... .++.++|.||||+.. .....|+.+...+.+... .. +. .+...+
T Consensus 166 DeahERtlAT---DiLmGllk~v~~~-rpdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg~--~P--vE---i~Yt~e 231 (699)
T KOG0925|consen 166 DEAHERTLAT---DILMGLLKEVVRN-RPDLKLVVMSATLDA---EKFQRYFGNAPLLAVPGT--HP--VE---IFYTPE 231 (699)
T ss_pred chhhhhhHHH---HHHHHHHHHHHhh-CCCceEEEeecccch---HHHHHHhCCCCeeecCCC--Cc--eE---EEecCC
Confidence 99995 2221 2222233322221 347899999999854 234455555555544321 11 11 133333
Q ss_pred chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC---------CCCcEEecCccCHHHHHHHHHhhhc-
Q 007280 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN---------GFPATTIHGDRTQQERELALRSFKS- 452 (609)
Q Consensus 383 ~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~---------~~~~~~ihg~~~~~~R~~~~~~F~~- 452 (609)
...+.|...+...+..+..+..+-+|||....++++..++.+... .+.+.++| +.++..+++-...
T Consensus 232 ~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~ 307 (699)
T KOG0925|consen 232 PERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEK 307 (699)
T ss_pred CChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcc
Confidence 444455555555444444444777999999999999999988743 25677788 4455555554432
Q ss_pred --C--CCcEEEEccccccCCCCCCccEEEEcCC------------------CCCHHHHHHHhhhcccCCCCceEEEEEcC
Q 007280 453 --G--KTPILVATDVAARGLDIPHVAHVVNFDL------------------PNDIDDYVHRIGRTGRAGKSGLATAFFNE 510 (609)
Q Consensus 453 --g--~~~ILVaT~v~~~GlDip~v~~VI~~d~------------------p~s~~~y~QriGRagR~g~~G~~~~f~~~ 510 (609)
| ..+|+|+|++++..+.|+.|.+||.-++ |.|..+-.||.||+||. .+|+|+.+|++
T Consensus 308 ~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 308 RNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred cCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 2 3579999999999999999999996554 56788899999999998 89999999986
Q ss_pred C
Q 007280 511 N 511 (609)
Q Consensus 511 ~ 511 (609)
+
T Consensus 387 ~ 387 (699)
T KOG0925|consen 387 E 387 (699)
T ss_pred H
Confidence 4
No 120
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=3.4e-19 Score=193.21 Aligned_cols=320 Identities=17% Similarity=0.163 Sum_probs=221.9
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
..|+++|--+.-.+++| -|+...||+|||+++.+|++...+.... |.|++|+-.||.|-++++..
T Consensus 77 ~r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~G~~-------------VhvvT~NdyLA~RDae~m~~ 141 (764)
T PRK12326 77 LRPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQGRR-------------VHVITVNDYLARRDAEWMGP 141 (764)
T ss_pred CCcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHcCCC-------------eEEEcCCHHHHHHHHHHHHH
Confidence 36889998888887766 4789999999999999999877765543 89999999999999999999
Q ss_pred hhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHcc------cccccceEEEEeccchhhh-hcC----
Q 007280 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DMG---- 313 (609)
Q Consensus 246 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~------~~~l~~i~~lVlDEah~~l-~~g---- 313 (609)
+...+++++.++.+..+..+....+ .|||+++|..-| .|.|... ......+.+.|+||+|.|| |..
T Consensus 142 ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPL 219 (764)
T PRK12326 142 LYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPL 219 (764)
T ss_pred HHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCce
Confidence 9999999999998887755444333 499999998765 2333221 1234568899999999855 210
Q ss_pred ----------CHHHHHHHHHHcCCC--------------------------------CCC--------------------
Q 007280 314 ----------FEPQIRKIVQQMDMP--------------------------------PPG-------------------- 331 (609)
Q Consensus 314 ----------f~~~i~~i~~~l~~~--------------------------------~~~-------------------- 331 (609)
....+..++..+... ...
T Consensus 220 iISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~ 299 (764)
T PRK12326 220 VLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQ 299 (764)
T ss_pred eeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHh
Confidence 011111122111100 000
Q ss_pred --------------------------------------------------------------CceEEEEEeeccHHHHHH
Q 007280 332 --------------------------------------------------------------MRQTMLFSATFPKEIQRL 349 (609)
Q Consensus 332 --------------------------------------------------------------~~q~il~SAT~~~~~~~l 349 (609)
-..+..||.|...+..++
T Consensus 300 ~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef 379 (764)
T PRK12326 300 RDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQL 379 (764)
T ss_pred cCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHH
Confidence 013566777766555555
Q ss_pred HHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCC
Q 007280 350 ASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGF 429 (609)
Q Consensus 350 ~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~ 429 (609)
.+.|--+.+.+ ...-.....-.....+.....|...+++.+..... ...++||.+.+++..+.|+++|...++
T Consensus 380 ~~iY~l~Vv~I--Ptnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~-----~GrPVLVgt~sI~~SE~ls~~L~~~gI 452 (764)
T PRK12326 380 RQFYDLGVSVI--PPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHE-----TGQPVLVGTHDVAESEELAERLRAAGV 452 (764)
T ss_pred HHHhCCcEEEC--CCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHH-----cCCCEEEEeCCHHHHHHHHHHHHhCCC
Confidence 55443332221 11111111111223455566777777777665533 378899999999999999999999999
Q ss_pred CcEEecCccCHHHHHHHHHhhhcCC-CcEEEEccccccCCCCCC---------------ccEEEEcCCCCCHHHHHHHhh
Q 007280 430 PATTIHGDRTQQERELALRSFKSGK-TPILVATDVAARGLDIPH---------------VAHVVNFDLPNDIDDYVHRIG 493 (609)
Q Consensus 430 ~~~~ihg~~~~~~R~~~~~~F~~g~-~~ILVaT~v~~~GlDip~---------------v~~VI~~d~p~s~~~y~QriG 493 (609)
+...++..-. +++.-+-. ..|+ -.|.|||++|+||.||.- ==|||-...+.|...-.|-.|
T Consensus 453 ~h~vLNAk~~--~~EA~IIa-~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrG 529 (764)
T PRK12326 453 PAVVLNAKND--AEEARIIA-EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRG 529 (764)
T ss_pred cceeeccCch--HhHHHHHH-hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhc
Confidence 9999988633 33322221 2343 359999999999999962 237999999999999999999
Q ss_pred hcccCCCCceEEEEEcCCC
Q 007280 494 RTGRAGKSGLATAFFNENN 512 (609)
Q Consensus 494 RagR~g~~G~~~~f~~~~~ 512 (609)
|+||.|.+|.+.+|++-+|
T Consensus 530 RaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 530 RAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred ccccCCCCCceeEEEEcch
Confidence 9999999999999998655
No 121
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.85 E-value=1.2e-20 Score=204.01 Aligned_cols=299 Identities=23% Similarity=0.293 Sum_probs=196.3
Q ss_pred CCCHHHHHHHhhHh----CC-CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISI----GG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~----~~-~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
.|+.+|..||..+. ++ +.+|+++.||+|||.++ +.++..|++.+..++ +|+|+-++.|+.|.+.
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~KR----------VLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWVKR----------VLFLADRNALVDQAYG 233 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchhhe----------eeEEechHHHHHHHHH
Confidence 57899999997654 33 34889999999999974 557888888776654 9999999999999999
Q ss_pred HHHHhhccCC-eEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc-----cccccceEEEEeccchhhhhcCCH
Q 007280 242 EAKKFSYQTG-VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-----RVSLQMIRYLALDEADRMLDMGFE 315 (609)
Q Consensus 242 ~~~~~~~~~~-i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~-----~~~l~~i~~lVlDEah~~l~~gf~ 315 (609)
.+..|...-. ++.+.-..+.. .+.|.|+|+..+...++.. ++....+++||+|||||-. .
T Consensus 234 af~~~~P~~~~~n~i~~~~~~~----------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~ 299 (875)
T COG4096 234 AFEDFLPFGTKMNKIEDKKGDT----------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----Y 299 (875)
T ss_pred HHHHhCCCccceeeeecccCCc----------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----H
Confidence 9988865422 22222111111 4799999999999887654 3455669999999999843 3
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHH-------------------HHHhhcCcEEEEec----ccCCcccce
Q 007280 316 PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRL-------------------ASDFLANYIFLAVG----RVGSSTDLI 372 (609)
Q Consensus 316 ~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l-------------------~~~~l~~~~~~~~~----~~~~~~~~i 372 (609)
.....|+.++. .- ++.++||+...+..- ..-||..|..+.+. ..+......
T Consensus 300 ~~~~~I~dYFd----A~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~ 373 (875)
T COG4096 300 SEWSSILDYFD----AA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAG 373 (875)
T ss_pred hhhHHHHHHHH----HH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCcc
Confidence 34446666652 11 234488875533222 22233333222221 111111111
Q ss_pred --------------eEEEEEEe------ccchHHHHHHHHHHHHhcCcCCC-CceEEEEecchhhHHHHHHHHHhC----
Q 007280 373 --------------VQRVEFVH------ESDKRSHLMDLLHAQVANGVHGK-QALTLVFVETKKGADALEHWLYMN---- 427 (609)
Q Consensus 373 --------------~q~~~~~~------~~~k~~~l~~~l~~~~~~~~~~~-~~k~lVF~~t~~~~~~l~~~L~~~---- 427 (609)
.+.+...+ -......+...+...+.....+. ..|+||||.+..+|+.+...|...
T Consensus 374 serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~ 453 (875)
T COG4096 374 SEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY 453 (875)
T ss_pred chhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc
Confidence 01111111 01122344444555544432222 679999999999999999999764
Q ss_pred -CCCcEEecCccCHHHHHHHHHhhhc-CCC-cEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccC
Q 007280 428 -GFPATTIHGDRTQQERELALRSFKS-GKT-PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 498 (609)
Q Consensus 428 -~~~~~~ihg~~~~~~R~~~~~~F~~-g~~-~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~ 498 (609)
+--+..|.++-.+. +..++.|.. .+. .|.|+.+++.+|+|+|.|..+|.+-.-.|...|.|++||.-|.
T Consensus 454 ~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 454 NGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred cCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 23456777764433 344566654 333 4788889999999999999999999999999999999999994
No 122
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.85 E-value=9.7e-20 Score=204.85 Aligned_cols=303 Identities=17% Similarity=0.164 Sum_probs=178.0
Q ss_pred CCHHHHHHHhhHh----C------CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHH
Q 007280 168 PTPVQRHAIPISI----G------GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (609)
Q Consensus 168 pt~iQ~~~i~~i~----~------~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 237 (609)
|+++|.+||..+. . .+..+++.+||||||++++..+ ..++... ..+++|||+|+.+|..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la-~~l~~~~----------~~~~vl~lvdR~~L~~ 307 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA-RKALELL----------KNPKVFFVVDRRELDY 307 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH-HHHHhhc----------CCCeEEEEECcHHHHH
Confidence 6788999998653 2 2468999999999999765533 3443221 1256999999999999
Q ss_pred HHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhc-CCCEEEeChHHHHHHHHcc--cccccc-eEEEEeccchhhhhcC
Q 007280 238 QIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERA--RVSLQM-IRYLALDEADRMLDMG 313 (609)
Q Consensus 238 Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IlV~Tpg~L~~~l~~~--~~~l~~-i~~lVlDEah~~l~~g 313 (609)
|+.+++.++.... . ..-.+...-...+.. ...|+|+|.+.|...+... ...... --+||+||||+...
T Consensus 308 Q~~~~f~~~~~~~----~--~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~-- 379 (667)
T TIGR00348 308 QLMKEFQSLQKDC----A--ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY-- 379 (667)
T ss_pred HHHHHHHhhCCCC----C--cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--
Confidence 9999999975321 1 111122222222322 3689999999998644331 111111 12899999998542
Q ss_pred CHHHHHHHH-HHcCCCCCCCceEEEEEeeccHHHHH-HHHHhh---cCcEEEEecccCCcccceeEEEEEE--e-----c
Q 007280 314 FEPQIRKIV-QQMDMPPPGMRQTMLFSATFPKEIQR-LASDFL---ANYIFLAVGRVGSSTDLIVQRVEFV--H-----E 381 (609)
Q Consensus 314 f~~~i~~i~-~~l~~~~~~~~q~il~SAT~~~~~~~-l~~~~l---~~~~~~~~~~~~~~~~~i~q~~~~~--~-----~ 381 (609)
..+...+ ..+ ++...++||||+-..... ....|. .++++. ........+.....+.+. . .
T Consensus 380 --~~~~~~l~~~~-----p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI~dG~~~~i~Y~~~~~~~~~~ 451 (667)
T TIGR00348 380 --GELAKNLKKAL-----KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAIRDGLTVKIDYEDRLPEDHLD 451 (667)
T ss_pred --hHHHHHHHhhC-----CCCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHhhcCCeeeEEEEecchhhccC
Confidence 2233333 333 235799999997421110 011111 122211 110100011110000000 0 0
Q ss_pred cch----------------------------------------HHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHH
Q 007280 382 SDK----------------------------------------RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALE 421 (609)
Q Consensus 382 ~~k----------------------------------------~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~ 421 (609)
..+ ...+.+.+.++..........+++|||.++..|..+.
T Consensus 452 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~ 531 (667)
T TIGR00348 452 RKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEK 531 (667)
T ss_pred hHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHH
Confidence 000 0111111222222212223578999999999999999
Q ss_pred HHHHhC-----CCCcEEecCccCHH---------------------HHHHHHHhhhc-CCCcEEEEccccccCCCCCCcc
Q 007280 422 HWLYMN-----GFPATTIHGDRTQQ---------------------ERELALRSFKS-GKTPILVATDVAARGLDIPHVA 474 (609)
Q Consensus 422 ~~L~~~-----~~~~~~ihg~~~~~---------------------~R~~~~~~F~~-g~~~ILVaT~v~~~GlDip~v~ 474 (609)
+.|... +..++.+++..... ..+.++++|++ +..+|||+++++.+|+|.|.+.
T Consensus 532 ~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~ 611 (667)
T TIGR00348 532 NALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILN 611 (667)
T ss_pred HHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccc
Confidence 888654 23445565543322 23478899976 6789999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHhhhcccC
Q 007280 475 HVVNFDLPNDIDDYVHRIGRTGRA 498 (609)
Q Consensus 475 ~VI~~d~p~s~~~y~QriGRagR~ 498 (609)
+++..-+-.+ ..++|.+||+.|.
T Consensus 612 tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 612 TLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred eEEEeccccc-cHHHHHHHHhccc
Confidence 9887776665 4689999999994
No 123
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.85 E-value=5.5e-20 Score=176.06 Aligned_cols=186 Identities=44% Similarity=0.645 Sum_probs=153.5
Q ss_pred CCCCCCCHHHHHHHhhHhCC-CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 163 CKYVKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 163 ~~~~~pt~iQ~~~i~~i~~~-~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
.++..|+++|.++++.++.. +.++++++||+|||.+++.+++..+..... ..+||++|++.++.|+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~-----------~~~l~~~p~~~~~~~~~~ 72 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKG-----------KRVLVLVPTRELAEQWAE 72 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCC-----------CcEEEEeCCHHHHHHHHH
Confidence 46788999999999999988 999999999999999988888877655421 129999999999999999
Q ss_pred HHHHhhccCCeEEEEEECCcChHHHHHHHhcCC-CEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHH
Q 007280 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK 320 (609)
Q Consensus 242 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~-~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~ 320 (609)
.+.++...........+++......+..+...+ +|+++|++.|.+.+.........+++|||||||.+....+...+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 152 (201)
T smart00487 73 ELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEK 152 (201)
T ss_pred HHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHH
Confidence 999887655445555666666566666666666 9999999999999988766678899999999999887567888888
Q ss_pred HHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEec
Q 007280 321 IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (609)
Q Consensus 321 i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~ 363 (609)
++..+ ....+++++|||+++.....+..++.+.+.+...
T Consensus 153 ~~~~~----~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 153 LLKLL----PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred HHHhC----CccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 88877 5567899999999999999888888876666544
No 124
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.85 E-value=1.3e-19 Score=193.33 Aligned_cols=319 Identities=19% Similarity=0.245 Sum_probs=218.1
Q ss_pred CCHHHHHHHhhHh----CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHH
Q 007280 168 PTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (609)
Q Consensus 168 pt~iQ~~~i~~i~----~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~ 243 (609)
+-+||.-.|+++. .+-+.|+..++|.|||.. .|+.++.|.+.+.. .+ -|||||...|-+ |..|+
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~~-gp---------HLVVvPsSTleN-WlrEf 467 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGNP-GP---------HLVVVPSSTLEN-WLREF 467 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCCC-CC---------cEEEecchhHHH-HHHHH
Confidence 5789999998664 456779999999999985 56677777766542 22 699999988855 56789
Q ss_pred HHhhccCCeEEEEEECCcChHHHHHHHhc----CCCEEEeChHHHHHHHHcc-cccccceEEEEeccchhhhhcCCHHHH
Q 007280 244 KKFSYQTGVKVVVAYGGAPINQQLRELER----GVDILVATPGRLVDLLERA-RVSLQMIRYLALDEADRMLDMGFEPQI 318 (609)
Q Consensus 244 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~----~~~IlV~Tpg~L~~~l~~~-~~~l~~i~~lVlDEah~~l~~gf~~~i 318 (609)
.+||.. +++...||....+.+++..-. .++|||+|+.....--... .+.-.+++++|+||+|.|.++. ...+
T Consensus 468 ~kwCPs--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy 544 (941)
T KOG0389|consen 468 AKWCPS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERY 544 (941)
T ss_pred HHhCCc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHH
Confidence 999865 788899999877777765432 5899999987653211111 1223467899999999877765 4455
Q ss_pred HHHHHHcCCCCCCCceEEEEEeec-cHHHHHHHH---HhhcCcE----------EEEecc--------------------
Q 007280 319 RKIVQQMDMPPPGMRQTMLFSATF-PKEIQRLAS---DFLANYI----------FLAVGR-------------------- 364 (609)
Q Consensus 319 ~~i~~~l~~~~~~~~q~il~SAT~-~~~~~~l~~---~~l~~~~----------~~~~~~-------------------- 364 (609)
++++.- +..+.||+|.|+ .+++.+|.. -.|.+.. +-....
T Consensus 545 ~~LM~I------~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~ 618 (941)
T KOG0389|consen 545 KHLMSI------NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKT 618 (941)
T ss_pred HHhccc------cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHH
Confidence 555442 134568888885 222222211 1110000 000000
Q ss_pred -------------cCCcccceeEEEEEEe---------------------------------------------------
Q 007280 365 -------------VGSSTDLIVQRVEFVH--------------------------------------------------- 380 (609)
Q Consensus 365 -------------~~~~~~~i~q~~~~~~--------------------------------------------------- 380 (609)
+-...+.-.+.+++|.
T Consensus 619 im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~ 698 (941)
T KOG0389|consen 619 IMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSI 698 (941)
T ss_pred hhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHh
Confidence 0000000112222222
Q ss_pred ------------------------------------------------------------ccchHHHHHHHHHHHHhcCc
Q 007280 381 ------------------------------------------------------------ESDKRSHLMDLLHAQVANGV 400 (609)
Q Consensus 381 ------------------------------------------------------------~~~k~~~l~~~l~~~~~~~~ 400 (609)
...|...|..+|.....
T Consensus 699 Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~--- 775 (941)
T KOG0389|consen 699 YTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKK--- 775 (941)
T ss_pred ccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhh---
Confidence 11222233333333322
Q ss_pred CCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCC--cEEEEccccccCCCCCCccEEEE
Q 007280 401 HGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT--PILVATDVAARGLDIPHVAHVVN 478 (609)
Q Consensus 401 ~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~--~ILVaT~v~~~GlDip~v~~VI~ 478 (609)
++.++|||.......+.|...|...++....+.|...-.+|+.+++.|...+. -+|++|.+.+-|||+..+++||.
T Consensus 776 --~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi 853 (941)
T KOG0389|consen 776 --KGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII 853 (941)
T ss_pred --cCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE
Confidence 36889999999999999999999999999999999999999999999987653 36889999999999999999999
Q ss_pred cCCCCCHHHHHHHhhhcccCCCCceE--EEEEcCCC
Q 007280 479 FDLPNDIDDYVHRIGRTGRAGKSGLA--TAFFNENN 512 (609)
Q Consensus 479 ~d~p~s~~~y~QriGRagR~g~~G~~--~~f~~~~~ 512 (609)
+|...|+-+-.|.--||+|+||.-.+ +-|+++..
T Consensus 854 hD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 854 HDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred eecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 99999999999999999999996654 44555543
No 125
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=3e-19 Score=196.99 Aligned_cols=316 Identities=22% Similarity=0.255 Sum_probs=214.7
Q ss_pred CCCHHHHHHHhhHhCC----CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISIGG----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~----~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
.+++-|+.++..+... ...++.+-||||||.+|+-.|-..+.+.+ .+|||+|-..|..|+.+.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk-------------qvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK-------------QVLVLVPEIALTPQLLAR 264 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC-------------EEEEEeccccchHHHHHH
Confidence 5688899999988765 56899999999999988775555544432 299999999999999888
Q ss_pred HHHhhccCCeEEEEEECCcChHHHHHHHhc----CCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhh---cC--
Q 007280 243 AKKFSYQTGVKVVVAYGGAPINQQLRELER----GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD---MG-- 313 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~----~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~---~g-- 313 (609)
++.. ++.++.+++.+.+..+....+.+ ...|+|+|-..|. ..++++.+||+||=|.-.- .+
T Consensus 265 f~~r---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~pr 334 (730)
T COG1198 265 FKAR---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPR 334 (730)
T ss_pred HHHH---hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCC
Confidence 7775 46889999999887776655543 5799999965543 3588899999999996331 11
Q ss_pred -CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEe-ccchH-----H
Q 007280 314 -FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH-ESDKR-----S 386 (609)
Q Consensus 314 -f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~-~~~k~-----~ 386 (609)
...++.....+. ...++||-|||+.-+-...+ .-..|..+.+.............+..+. ...+. .
T Consensus 335 YhARdvA~~Ra~~-----~~~pvvLgSATPSLES~~~~--~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~ 407 (730)
T COG1198 335 YHARDVAVLRAKK-----ENAPVVLGSATPSLESYANA--ESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSP 407 (730)
T ss_pred cCHHHHHHHHHHH-----hCCCEEEecCCCCHHHHHhh--hcCceEEEEccccccccCCCcceEEeccccccccCccCCH
Confidence 122333333333 35679999999765443333 2334555554433322212222222222 22222 5
Q ss_pred HHHHHHHHHHhcCcCCCCceEEEEecchhhHHHH----------------------------------------------
Q 007280 387 HLMDLLHAQVANGVHGKQALTLVFVETKKGADAL---------------------------------------------- 420 (609)
Q Consensus 387 ~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l---------------------------------------------- 420 (609)
.|++.+...... +.++|+|+|.+-.+-.+
T Consensus 408 ~Ll~~i~~~l~~-----geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cg 482 (730)
T COG1198 408 ALLEAIRKTLER-----GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECG 482 (730)
T ss_pred HHHHHHHHHHhc-----CCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCC
Confidence 677777776654 66788888886544322
Q ss_pred --------------HHHHHhC--CCCcEEecCccCH--HHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCC
Q 007280 421 --------------EHWLYMN--GFPATTIHGDRTQ--QERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLP 482 (609)
Q Consensus 421 --------------~~~L~~~--~~~~~~ihg~~~~--~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p 482 (609)
++.|... +.++..+.++.+. ..-+..++.|.+|+.+|||.|.+++.|.|+|+|++|...|..
T Consensus 483 s~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD 562 (730)
T COG1198 483 SEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDAD 562 (730)
T ss_pred CCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEech
Confidence 2222111 4556666666544 345788999999999999999999999999999997765543
Q ss_pred C------------CHHHHHHHhhhcccCCCCceEEEEEcCCChhhHH
Q 007280 483 N------------DIDDYVHRIGRTGRAGKSGLATAFFNENNMSLAR 517 (609)
Q Consensus 483 ~------------s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~ 517 (609)
. ....+.|-.|||||.+++|.+++-.-.-+-..+.
T Consensus 563 ~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~ 609 (730)
T COG1198 563 TGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQ 609 (730)
T ss_pred hhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHH
Confidence 2 3455789999999999999988877655443333
No 126
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.83 E-value=3.3e-18 Score=187.54 Aligned_cols=322 Identities=16% Similarity=0.230 Sum_probs=206.8
Q ss_pred CCCHHHHHHHhhHhC---C-------CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHH
Q 007280 167 KPTPVQRHAIPISIG---G-------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~---~-------~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 236 (609)
.++|+|++.+..+.. + ..+|+.-.+|+|||+. +|+.+..+++..+...+ .--++|||||. .|+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~-----~~~k~lVV~P~-sLv 310 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKP-----LINKPLVVAPS-SLV 310 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccc-----cccccEEEccH-HHH
Confidence 579999999986643 2 2378888999999996 55566666655433111 01138999997 788
Q ss_pred HHHHHHHHHhhccCCeEEEEEECCcCh--HHH--HHHH---hcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhh
Q 007280 237 SQIHVEAKKFSYQTGVKVVVAYGGAPI--NQQ--LREL---ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (609)
Q Consensus 237 ~Qi~~~~~~~~~~~~i~~~~~~gg~~~--~~~--~~~l---~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~ 309 (609)
..|+.|+.++.-...+....+++.... ... +..+ ....-|++.+++.+.+.++. +.+..+++||+||.|++
T Consensus 311 ~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 311 NNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCc
Confidence 999999999976556778888887763 111 1111 11256889999998766543 34677899999999997
Q ss_pred hhcCCHHHHHHHHHHcCCCCCCCceEEEEEeec-cHHHHHHHHHh-----------------------------------
Q 007280 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF-PKEIQRLASDF----------------------------------- 353 (609)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~-~~~~~~l~~~~----------------------------------- 353 (609)
-.. ...+.+.+..+. ..+.|++|.|+ .+++.++...+
T Consensus 389 kN~--~s~~~kaL~~l~-----t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~ 461 (776)
T KOG0390|consen 389 KNS--DSLTLKALSSLK-----TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDR 461 (776)
T ss_pred cch--hhHHHHHHHhcC-----CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhh
Confidence 653 345566666653 23468888885 22222221100
Q ss_pred ------------hcCcEEEEec-ccCCcccceeEEEEEEeccc-------------------------------------
Q 007280 354 ------------LANYIFLAVG-RVGSSTDLIVQRVEFVHESD------------------------------------- 383 (609)
Q Consensus 354 ------------l~~~~~~~~~-~~~~~~~~i~q~~~~~~~~~------------------------------------- 383 (609)
...-+..... ......+.....+.++....
T Consensus 462 ~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~ 541 (776)
T KOG0390|consen 462 EREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPS 541 (776)
T ss_pred hhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHH
Confidence 0000000000 00111111222222222111
Q ss_pred -------------------------------------hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHh
Q 007280 384 -------------------------------------KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYM 426 (609)
Q Consensus 384 -------------------------------------k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~ 426 (609)
|...|..++...... -..++.+..+-+...+.+..++..
T Consensus 542 L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek----~~~~~v~Isny~~tldl~e~~~~~ 617 (776)
T KOG0390|consen 542 LLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREK----LLVKSVLISNYTQTLDLFEQLCRW 617 (776)
T ss_pred hhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhh----cceEEEEeccHHHHHHHHHHHHhh
Confidence 111222222111100 123344445666666666666667
Q ss_pred CCCCcEEecCccCHHHHHHHHHhhhcCCCc---EEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCce
Q 007280 427 NGFPATTIHGDRTQQERELALRSFKSGKTP---ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 503 (609)
Q Consensus 427 ~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~---ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~ 503 (609)
.|+.++.+||.|+..+|+.+++.|.+.... .|.+|.+.+.||++-..+.||.||++||++.-.|.+.|+.|.||+-.
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~ 697 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKP 697 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcce
Confidence 799999999999999999999999975443 56678999999999999999999999999999999999999999888
Q ss_pred EEEEE
Q 007280 504 ATAFF 508 (609)
Q Consensus 504 ~~~f~ 508 (609)
|+++-
T Consensus 698 v~iYr 702 (776)
T KOG0390|consen 698 VYIYR 702 (776)
T ss_pred EEEEE
Confidence 77664
No 127
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=5.2e-19 Score=179.77 Aligned_cols=296 Identities=18% Similarity=0.192 Sum_probs=197.0
Q ss_pred CCCCCHHHHHHHhhHhCC---CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 165 YVKPTPVQRHAIPISIGG---RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 165 ~~~pt~iQ~~~i~~i~~~---~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
-..++|+|.+++..+..+ |.-||..|+|+|||++-+.++. .+. ..|||||.....+.||..
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-tik---------------K~clvLcts~VSVeQWkq 363 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TIK---------------KSCLVLCTSAVSVEQWKQ 363 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-eec---------------ccEEEEecCccCHHHHHH
Confidence 346899999999988743 5689999999999997554332 221 129999999999999999
Q ss_pred HHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc--------cccccceEEEEeccchhhhhcC
Q 007280 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA--------RVSLQMIRYLALDEADRMLDMG 313 (609)
Q Consensus 242 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~--------~~~l~~i~~lVlDEah~~l~~g 313 (609)
.++.|+....-.++.++.... .....++.|+|+|+.++..--.+. .+.-..|.++||||+|.+-..-
T Consensus 364 Qfk~wsti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M 438 (776)
T KOG1123|consen 364 QFKQWSTIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM 438 (776)
T ss_pred HHHhhcccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH
Confidence 999987655555665554432 123457899999988764321111 1123568999999999877666
Q ss_pred CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHH-HhhcCcEEEEecccCCcc-----------------------
Q 007280 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS-DFLANYIFLAVGRVGSST----------------------- 369 (609)
Q Consensus 314 f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~-~~l~~~~~~~~~~~~~~~----------------------- 369 (609)
|+..+..+-.++ .+.++||+-.+-..+.. +||-.|..+.....+...
T Consensus 439 FRRVlsiv~aHc---------KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~e 509 (776)
T KOG1123|consen 439 FRRVLSIVQAHC---------KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYRE 509 (776)
T ss_pred HHHHHHHHHHHh---------hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHH
Confidence 776666666665 58999998554322211 122111111111000000
Q ss_pred ----cceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHH
Q 007280 370 ----DLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 445 (609)
Q Consensus 370 ----~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~ 445 (609)
..-...+.++-...|....--+++-+.. .+.|+|||....-....++-.|.+ -.|+|..+|.+|.+
T Consensus 510 YL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~-----RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ 579 (776)
T KOG1123|consen 510 YLRENTRKRMLLYVMNPNKFRACQFLIKFHER-----RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMK 579 (776)
T ss_pred HHhhhhhhhheeeecCcchhHHHHHHHHHHHh-----cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHH
Confidence 0011112222233343332223333322 378899999888776666665533 26899999999999
Q ss_pred HHHhhhcC-CCcEEEEccccccCCCCCCccEEEEcCCC-CCHHHHHHHhhhcccCCC
Q 007280 446 ALRSFKSG-KTPILVATDVAARGLDIPHVAHVVNFDLP-NDIDDYVHRIGRTGRAGK 500 (609)
Q Consensus 446 ~~~~F~~g-~~~ILVaT~v~~~GlDip~v~~VI~~d~p-~s~~~y~QriGRagR~g~ 500 (609)
|++.|+-+ +++.++-..|+.+.+|+|.++++|+...- .|..+-.||+||.-|+-+
T Consensus 580 ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 580 ILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred HHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhh
Confidence 99999965 67888999999999999999999987764 367888999999999743
No 128
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=5.6e-18 Score=188.19 Aligned_cols=321 Identities=16% Similarity=0.184 Sum_probs=217.6
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
..|+++|--.--.+ .+.-|+...||+|||+++.+|++...+.... |-||+||-.||.|-++++..
T Consensus 81 m~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~G~~-------------VhvvT~ndyLA~RD~e~m~~ 145 (913)
T PRK13103 81 MRHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALSGKG-------------VHVVTVNDYLARRDANWMRP 145 (913)
T ss_pred CCcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHcCCC-------------EEEEeCCHHHHHHHHHHHHH
Confidence 35677776544333 4557899999999999999999877765542 89999999999999999999
Q ss_pred hhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHccc------ccccceEEEEeccchhhh-hcC----
Q 007280 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML-DMG---- 313 (609)
Q Consensus 246 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~~------~~l~~i~~lVlDEah~~l-~~g---- 313 (609)
+....++++.++.+..+..+....+. |+|+|+|..-| .|.|.... .....+.|+|+||+|.+| |..
T Consensus 146 l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPL 223 (913)
T PRK13103 146 LYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPL 223 (913)
T ss_pred HhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCce
Confidence 99999999999888776555444444 99999998876 34443321 124778999999999855 210
Q ss_pred -----------CHHHHHHHHHHcCC--------------------------------------------------C----
Q 007280 314 -----------FEPQIRKIVQQMDM--------------------------------------------------P---- 328 (609)
Q Consensus 314 -----------f~~~i~~i~~~l~~--------------------------------------------------~---- 328 (609)
....+..++..+.. .
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~ 303 (913)
T PRK13103 224 IISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHN 303 (913)
T ss_pred eecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhh
Confidence 00111111111100 0
Q ss_pred -------------------------------------------------------------CCCC---------------
Q 007280 329 -------------------------------------------------------------PPGM--------------- 332 (609)
Q Consensus 329 -------------------------------------------------------------~~~~--------------- 332 (609)
-...
T Consensus 304 ~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~ 383 (913)
T PRK13103 304 LGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRL 383 (913)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHh
Confidence 0000
Q ss_pred -ceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEe
Q 007280 333 -RQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFV 411 (609)
Q Consensus 333 -~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~ 411 (609)
.++..||.|...+..++...|--+.+.+.. .-.....-.....+.....|...+++.+..... ++.++||-+
T Consensus 384 Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPT--nkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~-----~GrPVLVGT 456 (913)
T PRK13103 384 YNKLSGMTGTADTEAFEFRQIYGLDVVVIPP--NKPLARKDFNDLVYLTAEEKYAAIITDIKECMA-----LGRPVLVGT 456 (913)
T ss_pred cchhccCCCCCHHHHHHHHHHhCCCEEECCC--CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCCEEEEe
Confidence 024445555544444444433322222211 111111112223455666777777777766543 378899999
Q ss_pred cchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCC-CcEEEEccccccCCCCC-------------------
Q 007280 412 ETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK-TPILVATDVAARGLDIP------------------- 471 (609)
Q Consensus 412 ~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~-~~ILVaT~v~~~GlDip------------------- 471 (609)
.|++..+.|+.+|...+++..+++.... +++.-+-. ..|+ -.|.|||++|+||.||.
T Consensus 457 ~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~ 533 (913)
T PRK13103 457 ATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQ 533 (913)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHH
Confidence 9999999999999999999888877533 33333322 3453 45999999999999994
Q ss_pred -------------Cc-----cEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 472 -------------HV-----AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 472 -------------~v-----~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
.| =|||--..+.|..--.|..||+||.|.+|.+-+|++-+|.
T Consensus 534 ~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 534 IAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12 2789889999999999999999999999999999987654
No 129
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.81 E-value=2.1e-18 Score=190.97 Aligned_cols=328 Identities=20% Similarity=0.238 Sum_probs=210.5
Q ss_pred CCHHHHHHHhhHh--C--CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHH
Q 007280 168 PTPVQRHAIPISI--G--GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (609)
Q Consensus 168 pt~iQ~~~i~~i~--~--~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~ 243 (609)
++.||++.|+++. + +-+-|+|..+|.|||+..+--+..-.++. +.........-.|||||. .|+--|..|+
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r----~s~~~e~~~~PSLIVCPs-TLtGHW~~E~ 1050 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKR----RSESSEFNRLPSLIVCPS-TLTGHWKSEV 1050 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhh----cccchhhccCCeEEECCc-hhhhHHHHHH
Confidence 4678999998764 2 46789999999999997544333333332 111111111228999997 8999999999
Q ss_pred HHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHH
Q 007280 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQ 323 (609)
Q Consensus 244 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~ 323 (609)
.+|+.. +++...+|....+...+.--+..+|+|+.++.+.+-+.. +.-..+.|+||||-|-|-+. ...+.+-++
T Consensus 1051 ~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavk 1124 (1549)
T KOG0392|consen 1051 KKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVK 1124 (1549)
T ss_pred HHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHH
Confidence 999877 778887887766666666556689999999887643321 12345789999999977553 344555555
Q ss_pred HcCCCCCCCceEEEEEeec-cHHHHHHHHH---hhcC--------------cEEEEecc---------------------
Q 007280 324 QMDMPPPGMRQTMLFSATF-PKEIQRLASD---FLAN--------------YIFLAVGR--------------------- 364 (609)
Q Consensus 324 ~l~~~~~~~~q~il~SAT~-~~~~~~l~~~---~l~~--------------~~~~~~~~--------------------- 364 (609)
.+.. . ..+.+|.|+ .+++.++-.. +|.. ++......
T Consensus 1125 qL~a----~-hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqV 1199 (1549)
T KOG0392|consen 1125 QLRA----N-HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQV 1199 (1549)
T ss_pred HHhh----c-ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHH
Confidence 5522 1 346777774 1111111000 0000 00000000
Q ss_pred ------------cCCcccceeEEEE-------------------------------------------------------
Q 007280 365 ------------VGSSTDLIVQRVE------------------------------------------------------- 377 (609)
Q Consensus 365 ------------~~~~~~~i~q~~~------------------------------------------------------- 377 (609)
....++.+.|.|.
T Consensus 1200 LPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpa 1279 (1549)
T KOG0392|consen 1200 LPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPA 1279 (1549)
T ss_pred HHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcc
Confidence 0000000111110
Q ss_pred E-------------------------EeccchHHHHHHHHHHHHhcCcC---------CCCceEEEEecchhhHHHHHHH
Q 007280 378 F-------------------------VHESDKRSHLMDLLHAQVANGVH---------GKQALTLVFVETKKGADALEHW 423 (609)
Q Consensus 378 ~-------------------------~~~~~k~~~l~~~l~~~~~~~~~---------~~~~k~lVF~~t~~~~~~l~~~ 423 (609)
. +....|...|-++|.+.-..+.. -.+.++||||+-+..++.+.+-
T Consensus 1280 Lvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekD 1359 (1549)
T KOG0392|consen 1280 LVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKD 1359 (1549)
T ss_pred eeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHH
Confidence 0 01122333333444332111100 1467899999999999999998
Q ss_pred HHhCCCC---cEEecCccCHHHHHHHHHhhhcC-CCcEE-EEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccC
Q 007280 424 LYMNGFP---ATTIHGDRTQQERELALRSFKSG-KTPIL-VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 498 (609)
Q Consensus 424 L~~~~~~---~~~ihg~~~~~~R~~~~~~F~~g-~~~IL-VaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~ 498 (609)
|.+.-.+ ...+.|..++.+|.++.++|+++ .++|| ++|.|.+-|||+..+++||+++-.||+..-.|.+.||+|.
T Consensus 1360 L~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRI 1439 (1549)
T KOG0392|consen 1360 LFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRI 1439 (1549)
T ss_pred HhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhh
Confidence 8765443 33689999999999999999998 67765 4679999999999999999999999999999999999999
Q ss_pred CCCceE--EEEEcCC
Q 007280 499 GKSGLA--TAFFNEN 511 (609)
Q Consensus 499 g~~G~~--~~f~~~~ 511 (609)
||+..+ +-|++..
T Consensus 1440 GQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1440 GQKRVVNVYRLITRG 1454 (1549)
T ss_pred cCceeeeeeeehhcc
Confidence 998765 4445543
No 130
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.80 E-value=1.3e-18 Score=188.77 Aligned_cols=158 Identities=21% Similarity=0.226 Sum_probs=114.7
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.|..+|.+.+..+-.+..++|.|||.+|||.+ ..-++...++.... -.+|+++||.+|++|+...+...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD~----------~VVIyvaPtKaLVnQvsa~VyaR 579 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESDS----------DVVIYVAPTKALVNQVSANVYAR 579 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhhcCC----------CEEEEecchHHHhhhhhHHHHHh
Confidence 58889999999999999999999999999985 33355555554322 24999999999999997776554
Q ss_pred h-ccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHc---ccccccceEEEEeccchhhhhcCCHHHHHHHH
Q 007280 247 S-YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER---ARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (609)
Q Consensus 247 ~-~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~---~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~ 322 (609)
. ..+-.+.+.+.|......++.. -.|+|+|+-|+.|..+|.. ......+++++|+||+|.+..+.-...++.++
T Consensus 580 F~~~t~~rg~sl~g~ltqEYsinp--~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll 657 (1330)
T KOG0949|consen 580 FDTKTFLRGVSLLGDLTQEYSINP--WNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLL 657 (1330)
T ss_pred hccCccccchhhHhhhhHHhcCCc--hhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHH
Confidence 3 3333344444555444444332 2599999999999988877 34467889999999999987654334445555
Q ss_pred HHcCCCCCCCceEEEEEeecc
Q 007280 323 QQMDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 323 ~~l~~~~~~~~q~il~SAT~~ 343 (609)
..+ .+.+|.+|||+.
T Consensus 658 ~li------~CP~L~LSATig 672 (1330)
T KOG0949|consen 658 LLI------PCPFLVLSATIG 672 (1330)
T ss_pred Hhc------CCCeeEEecccC
Confidence 544 246999999984
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=3.7e-17 Score=179.81 Aligned_cols=320 Identities=19% Similarity=0.189 Sum_probs=216.9
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.|+++|--.--.+..| -|+...||-|||+++.+|++-..+..+. |-||+..--||.-=++++..+
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~Gkg-------------VhVVTvNdYLA~RDae~mg~v 142 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTGKG-------------VIVSTVNEYLAERDAEEMGKV 142 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcCCc-------------eEEEecchhhhhhhHHHHHHH
Confidence 6788887766555554 5899999999999999999766665432 777888889999989999999
Q ss_pred hccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHcc------cccccceEEEEeccchhhh-hcC-----
Q 007280 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DMG----- 313 (609)
Q Consensus 247 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~------~~~l~~i~~lVlDEah~~l-~~g----- 313 (609)
...+|+.|.+...+....+....+ .|||+++|..-| .|.|... ......+.|.|+||+|.+| |..
T Consensus 143 y~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLI 220 (925)
T PRK12903 143 FNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLI 220 (925)
T ss_pred HHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccc
Confidence 999999999888776654443333 599999998765 4444432 1224668899999999855 211
Q ss_pred ----------CHHHHHHHHHHcCCC-------------------------------C-----------------------
Q 007280 314 ----------FEPQIRKIVQQMDMP-------------------------------P----------------------- 329 (609)
Q Consensus 314 ----------f~~~i~~i~~~l~~~-------------------------------~----------------------- 329 (609)
+...+..++..+... .
T Consensus 221 ISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd 300 (925)
T PRK12903 221 ISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKED 300 (925)
T ss_pred ccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcC
Confidence 111111222211100 0
Q ss_pred ------------------------------------------CCC----------------ceEEEEEeeccHHHHHHHH
Q 007280 330 ------------------------------------------PGM----------------RQTMLFSATFPKEIQRLAS 351 (609)
Q Consensus 330 ------------------------------------------~~~----------------~q~il~SAT~~~~~~~l~~ 351 (609)
.+. .++..||.|...+-.++..
T Consensus 301 ~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~ 380 (925)
T PRK12903 301 VEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFID 380 (925)
T ss_pred CceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHH
Confidence 000 0344556665554444444
Q ss_pred HhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCc
Q 007280 352 DFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPA 431 (609)
Q Consensus 352 ~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~ 431 (609)
.|--+.+.+.. .-.....-.....+.....|...+++.+..... +..++||.|.+++..+.|+++|...+++.
T Consensus 381 iY~l~Vv~IPT--nkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~-----~gqPVLVgT~SIe~SE~ls~~L~~~gi~h 453 (925)
T PRK12903 381 IYNMRVNVVPT--NKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHK-----KGQPILIGTAQVEDSETLHELLLEANIPH 453 (925)
T ss_pred HhCCCEEECCC--CCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHHHHHCCCCc
Confidence 33222222211 111111111113455566777777776665532 37889999999999999999999999999
Q ss_pred EEecCccCHHHHHHHHHhhhcCC-CcEEEEccccccCCCCCCcc--------EEEEcCCCCCHHHHHHHhhhcccCCCCc
Q 007280 432 TTIHGDRTQQERELALRSFKSGK-TPILVATDVAARGLDIPHVA--------HVVNFDLPNDIDDYVHRIGRTGRAGKSG 502 (609)
Q Consensus 432 ~~ihg~~~~~~R~~~~~~F~~g~-~~ILVaT~v~~~GlDip~v~--------~VI~~d~p~s~~~y~QriGRagR~g~~G 502 (609)
.+++.. +.+++..+-. ..|+ -.|.|||++|+||.||.--. |||....|.|..--.|..||+||.|.+|
T Consensus 454 ~vLNAk--~~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpG 530 (925)
T PRK12903 454 TVLNAK--QNAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVG 530 (925)
T ss_pred eeeccc--chhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCC
Confidence 999885 3344444433 4564 45999999999999996432 8999999999999999999999999999
Q ss_pred eEEEEEcCCCh
Q 007280 503 LATAFFNENNM 513 (609)
Q Consensus 503 ~~~~f~~~~~~ 513 (609)
.+-.|++-+|.
T Consensus 531 ss~f~lSLeD~ 541 (925)
T PRK12903 531 ESRFFISLDDQ 541 (925)
T ss_pred cceEEEecchH
Confidence 99999986654
No 132
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.79 E-value=2.8e-17 Score=188.11 Aligned_cols=328 Identities=19% Similarity=0.195 Sum_probs=197.9
Q ss_pred CCCHHHHHHHhh----HhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHH-HH
Q 007280 167 KPTPVQRHAIPI----SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HV 241 (609)
Q Consensus 167 ~pt~iQ~~~i~~----i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi-~~ 241 (609)
++++-|.+.... +.+++.++++|+||+|||++|++|++.... .+.+||++||++|++|+ .+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~--------------~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD--------------QRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC--------------CCcEEEEeCcHHHHHHHHHH
Confidence 689999984443 345788999999999999999999886431 12399999999999999 57
Q ss_pred HHHHhhccCCeEEEEEECCcChH-----HH------------------------------------------HHHH----
Q 007280 242 EAKKFSYQTGVKVVVAYGGAPIN-----QQ------------------------------------------LREL---- 270 (609)
Q Consensus 242 ~~~~~~~~~~i~~~~~~gg~~~~-----~~------------------------------------------~~~l---- 270 (609)
.+..+....++++.++.|+..+- ++ +..+
T Consensus 311 ~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~ 390 (820)
T PRK07246 311 EVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDG 390 (820)
T ss_pred HHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccC
Confidence 77777777778777777654310 00 0000
Q ss_pred --------------------hcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcC-----C-------HHH-
Q 007280 271 --------------------ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-----F-------EPQ- 317 (609)
Q Consensus 271 --------------------~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~g-----f-------~~~- 317 (609)
...++|||+...-|+..+..... +...++|||||||++-+.. . ...
T Consensus 391 ~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l 469 (820)
T PRK07246 391 NLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTI 469 (820)
T ss_pred CCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHH
Confidence 01258999999888776644432 6778999999999865321 0 000
Q ss_pred ------------------------------------------HHH---H------------HHHcCC---------CC--
Q 007280 318 ------------------------------------------IRK---I------------VQQMDM---------PP-- 329 (609)
Q Consensus 318 ------------------------------------------i~~---i------------~~~l~~---------~~-- 329 (609)
+.. . ...+.. ..
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~ 549 (820)
T PRK07246 470 QKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQS 549 (820)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 000 0 000000 00
Q ss_pred ---------------------CCCceEEEEEeecc--HHHHHHHHHhh-cCcEEEEecccCCcccceeEEEEEEe----c
Q 007280 330 ---------------------PGMRQTMLFSATFP--KEIQRLASDFL-ANYIFLAVGRVGSSTDLIVQRVEFVH----E 381 (609)
Q Consensus 330 ---------------------~~~~q~il~SAT~~--~~~~~l~~~~l-~~~~~~~~~~~~~~~~~i~q~~~~~~----~ 381 (609)
+....+|++|||++ .... +.+.+- .....+.+. ... -.+...++. .
T Consensus 550 ~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~---~~~--~~~~~~~i~~~~p~ 623 (820)
T PRK07246 550 EKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE---KDK--KQDQLVVVDQDMPL 623 (820)
T ss_pred CcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC---CCh--HHccEEEeCCCCCC
Confidence 11236788899884 2222 322221 122221111 000 112222221 1
Q ss_pred ------cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCC
Q 007280 382 ------SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT 455 (609)
Q Consensus 382 ------~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~ 455 (609)
..-...+.+.+..... ..+++||++++.+..+.+++.|....+++ ...|... .+.+++++|+.+..
T Consensus 624 ~~~~~~~~~~~~~~~~i~~~~~-----~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~ 695 (820)
T PRK07246 624 VTETSDEVYAEEIAKRLEELKQ-----LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQ 695 (820)
T ss_pred CCCCChHHHHHHHHHHHHHHHh-----cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCC
Confidence 1112244444433331 26789999999999999999997654444 4444322 35678999999888
Q ss_pred cEEEEccccccCCCCCC--ccEEEEcCCCC----C--------------------------HHHHHHHhhhcccCCCCce
Q 007280 456 PILVATDVAARGLDIPH--VAHVVNFDLPN----D--------------------------IDDYVHRIGRTGRAGKSGL 503 (609)
Q Consensus 456 ~ILVaT~v~~~GlDip~--v~~VI~~d~p~----s--------------------------~~~y~QriGRagR~g~~G~ 503 (609)
.||++|+.+.+|||+|. ...||...+|. + +-.+.|-+||.-|....--
T Consensus 696 ~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~G 775 (820)
T PRK07246 696 QILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKS 775 (820)
T ss_pred eEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcE
Confidence 89999999999999973 55567666553 1 2234699999999865333
Q ss_pred EEEEEcCC--ChhhHHHHHHHH
Q 007280 504 ATAFFNEN--NMSLARPLTELM 523 (609)
Q Consensus 504 ~~~f~~~~--~~~~~~~l~~~l 523 (609)
++++++.. ...+-+.+.+.|
T Consensus 776 vv~ilD~R~~~k~Yg~~~l~sL 797 (820)
T PRK07246 776 AVLILDRRILTKSYGKQILASL 797 (820)
T ss_pred EEEEECCcccccHHHHHHHHhC
Confidence 44454432 333444444443
No 133
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.77 E-value=5.3e-17 Score=165.28 Aligned_cols=316 Identities=15% Similarity=0.168 Sum_probs=203.3
Q ss_pred CCCCHHHHHHHhhHh-CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~-~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
..+.|+|++.+...+ .+..+++..++|.|||+.++. |......+-+ .|||||. .|-..|.+++.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA~yyraEwp-------------lliVcPA-svrftWa~al~ 261 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IARYYRAEWP-------------LLIVCPA-SVRFTWAKALN 261 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HHHHHhhcCc-------------EEEEecH-HHhHHHHHHHH
Confidence 457899999998666 577899999999999997653 3333322221 8999998 55577788899
Q ss_pred HhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHH
Q 007280 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (609)
Q Consensus 245 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~ 324 (609)
+|.....- +.++.++..... .+..-..|.|.+++.|..+-. .+.-..+.+||+||+|.+-+.. ...++.++..
T Consensus 262 r~lps~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dl 334 (689)
T KOG1000|consen 262 RFLPSIHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDL 334 (689)
T ss_pred Hhcccccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhH
Confidence 98754322 444455443211 122235799999988755422 1223448999999999766543 3334444444
Q ss_pred cCCCCCCCceEEEEEeecc----H---------------HHHHHHHHhhcCc-EEEEeccc-------------------
Q 007280 325 MDMPPPGMRQTMLFSATFP----K---------------EIQRLASDFLANY-IFLAVGRV------------------- 365 (609)
Q Consensus 325 l~~~~~~~~q~il~SAT~~----~---------------~~~~l~~~~l~~~-~~~~~~~~------------------- 365 (609)
+ ....++||+|.|+. . +.-+++..|+... +.+..+..
T Consensus 335 l----k~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIR 410 (689)
T KOG1000|consen 335 L----KVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIR 410 (689)
T ss_pred H----HHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHH
Confidence 3 33357899999962 1 1122222222110 00000000
Q ss_pred -------CCcccceeEEEEEEecc--------------------------------------chHHHHHHHHHHHHhcCc
Q 007280 366 -------GSSTDLIVQRVEFVHES--------------------------------------DKRSHLMDLLHAQVANGV 400 (609)
Q Consensus 366 -------~~~~~~i~q~~~~~~~~--------------------------------------~k~~~l~~~l~~~~~~~~ 400 (609)
....+. .+.+.++... .|...+.+.|..+.. -.
T Consensus 411 RlK~dvL~qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~-l~ 488 (689)
T KOG1000|consen 411 RLKADVLKQLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYF-LP 488 (689)
T ss_pred HHHHHHHhhCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcc-cc
Confidence 000111 1222221110 011111111111000 12
Q ss_pred CCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCC-CcE-EEEccccccCCCCCCccEEEE
Q 007280 401 HGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK-TPI-LVATDVAARGLDIPHVAHVVN 478 (609)
Q Consensus 401 ~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~-~~I-LVaT~v~~~GlDip~v~~VI~ 478 (609)
..+..|.+||+......+.+...++..++..+.|.|..+..+|+.+.+.|+... ..| +++...+..||++...+.||+
T Consensus 489 d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF 568 (689)
T KOG1000|consen 489 DAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF 568 (689)
T ss_pred cCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEE
Confidence 345789999999999999999999999999999999999999999999998654 444 456678899999999999999
Q ss_pred cCCCCCHHHHHHHhhhcccCCCCceEEEEEc
Q 007280 479 FDLPNDIDDYVHRIGRTGRAGKSGLATAFFN 509 (609)
Q Consensus 479 ~d~p~s~~~y~QriGRagR~g~~G~~~~f~~ 509 (609)
..++||+.-.+|.-.|++|.||+..+.+.|-
T Consensus 569 aEL~wnPgvLlQAEDRaHRiGQkssV~v~yl 599 (689)
T KOG1000|consen 569 AELHWNPGVLLQAEDRAHRIGQKSSVFVQYL 599 (689)
T ss_pred EEecCCCceEEechhhhhhccccceeeEEEE
Confidence 9999999999999999999999776655443
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.76 E-value=1.4e-16 Score=176.44 Aligned_cols=280 Identities=18% Similarity=0.153 Sum_probs=178.7
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.|+++|--+.-.+ .+.-|+.+.||.|||+++.+|++-..+.... |-||+++..||.+-++++..+
T Consensus 76 r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~-------------VhVvT~NdyLA~RD~e~m~pv 140 (870)
T CHL00122 76 RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTGKG-------------VHIVTVNDYLAKRDQEWMGQI 140 (870)
T ss_pred CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcCCc-------------eEEEeCCHHHHHHHHHHHHHH
Confidence 4777776654333 4568999999999999999999755554322 899999999999999999999
Q ss_pred hccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHcc------cccccceEEEEeccchhhh-hcC-----
Q 007280 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DMG----- 313 (609)
Q Consensus 247 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~------~~~l~~i~~lVlDEah~~l-~~g----- 313 (609)
....++.|.++.++.+..+.... -.|||+++|..-| .|.|... ......+.+.|+||+|.|| |..
T Consensus 141 y~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLi 218 (870)
T CHL00122 141 YRFLGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLI 218 (870)
T ss_pred HHHcCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCcee
Confidence 99999999998887776544443 3489999998654 2333221 1234668899999999854 210
Q ss_pred ----------CHHHHHHHHHHcCC--------------------------------------------------------
Q 007280 314 ----------FEPQIRKIVQQMDM-------------------------------------------------------- 327 (609)
Q Consensus 314 ----------f~~~i~~i~~~l~~-------------------------------------------------------- 327 (609)
....+..++..+..
T Consensus 219 ISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d 298 (870)
T CHL00122 219 ISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKN 298 (870)
T ss_pred ccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcC
Confidence 00011111111100
Q ss_pred ---------------------C-------------------CCC----------------CceEEEEEeeccHHHHHHHH
Q 007280 328 ---------------------P-------------------PPG----------------MRQTMLFSATFPKEIQRLAS 351 (609)
Q Consensus 328 ---------------------~-------------------~~~----------------~~q~il~SAT~~~~~~~l~~ 351 (609)
+ ..+ -..+..||.|...+-.++..
T Consensus 299 ~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~ 378 (870)
T CHL00122 299 VHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEK 378 (870)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHH
Confidence 0 000 01355667776555444444
Q ss_pred HhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCc
Q 007280 352 DFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPA 431 (609)
Q Consensus 352 ~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~ 431 (609)
.|--+.+.+.. .-.....-.....+.....|...+++.+.... .+..++||-|.+++..+.|+++|...+++.
T Consensus 379 iY~l~vv~IPt--nkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~-----~~grPVLIgT~SIe~SE~ls~~L~~~gi~h 451 (870)
T CHL00122 379 IYNLEVVCIPT--HRPMLRKDLPDLIYKDELSKWRAIADECLQMH-----QTGRPILIGTTTIEKSELLSQLLKEYRLPH 451 (870)
T ss_pred HhCCCEEECCC--CCCccceeCCCeEEeCHHHHHHHHHHHHHHHH-----hcCCCEEEeeCCHHHHHHHHHHHHHcCCcc
Confidence 33333222211 11111111122334455567776666665543 247889999999999999999999999999
Q ss_pred EEecCccCHHHHHHHHHhhhcCC-CcEEEEccccccCCCCC
Q 007280 432 TTIHGDRTQQERELALRSFKSGK-TPILVATDVAARGLDIP 471 (609)
Q Consensus 432 ~~ihg~~~~~~R~~~~~~F~~g~-~~ILVaT~v~~~GlDip 471 (609)
.+++..-.+.+++..+-.- .|+ -.|.|||++|+||.||.
T Consensus 452 ~vLNAk~~~~~~EA~IIA~-AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 452 QLLNAKPENVRRESEIVAQ-AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred ceeeCCCccchhHHHHHHh-cCCCCcEEEeccccCCCcCee
Confidence 9999864332333332222 443 45999999999999983
No 135
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.74 E-value=2e-17 Score=147.87 Aligned_cols=120 Identities=43% Similarity=0.724 Sum_probs=109.4
Q ss_pred chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc
Q 007280 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 462 (609)
Q Consensus 383 ~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~ 462 (609)
.|...+.+++..... ...++||||++++.++.+++.|.....++..+|+.++..+|..+++.|+++...|||+|.
T Consensus 12 ~k~~~i~~~i~~~~~-----~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~ 86 (131)
T cd00079 12 EKLEALLELLKEHLK-----KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD 86 (131)
T ss_pred HHHHHHHHHHHhccc-----CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 566777777665432 367899999999999999999998889999999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEE
Q 007280 463 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF 507 (609)
Q Consensus 463 v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f 507 (609)
++++|+|+|.+++||++++|++..+|+|++||++|.|+.|.+++|
T Consensus 87 ~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 87 VIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999999999888764
No 136
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=6e-17 Score=166.90 Aligned_cols=335 Identities=13% Similarity=0.032 Sum_probs=229.3
Q ss_pred HHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHH
Q 007280 157 NLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (609)
Q Consensus 157 ~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 236 (609)
...++.+--+....+|.++|..+.+|+++++.-.|-+||.+++.+.....+..... ...+++.|+.+++
T Consensus 276 ~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~-----------s~~~~~~~~~~~~ 344 (1034)
T KOG4150|consen 276 RSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA-----------TNSLLPSEMVEHL 344 (1034)
T ss_pred HHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc-----------cceecchhHHHHh
Confidence 33445555667889999999999999999999999999999998877655544321 1279999999998
Q ss_pred HHHHHHHHHhh---ccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc----cccccceEEEEeccchhh
Q 007280 237 SQIHVEAKKFS---YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA----RVSLQMIRYLALDEADRM 309 (609)
Q Consensus 237 ~Qi~~~~~~~~---~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~----~~~l~~i~~lVlDEah~~ 309 (609)
......+.-.. +...--++-.+.+.+..+...-.+.+.+++++.|......+... ...+-...+++.||+|..
T Consensus 345 ~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y 424 (1034)
T KOG4150|consen 345 RNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALY 424 (1034)
T ss_pred hccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeee
Confidence 76533221111 01112234456666666666666778999999998876654332 223444568999999965
Q ss_pred hhcC---CHHHHHHHHHHcCC-CCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEe-----
Q 007280 310 LDMG---FEPQIRKIVQQMDM-PPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH----- 380 (609)
Q Consensus 310 l~~g---f~~~i~~i~~~l~~-~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~----- 380 (609)
+-.- -..+++.++..+.. ......|++-.+||+...++-..+.+--+.+.+... .++.. .-...+.+.+
T Consensus 425 ~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~-DGSPs-~~K~~V~WNP~~~P~ 502 (1034)
T KOG4150|consen 425 LFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTI-DGSPS-SEKLFVLWNPSAPPT 502 (1034)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEe-cCCCC-ccceEEEeCCCCCCc
Confidence 4221 23455555544421 123467999999999877776655444444433322 22221 1122222221
Q ss_pred ----ccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC----C----CCcEEecCccCHHHHHHHHH
Q 007280 381 ----ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN----G----FPATTIHGDRTQQERELALR 448 (609)
Q Consensus 381 ----~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~----~----~~~~~ihg~~~~~~R~~~~~ 448 (609)
.+.+......++.+.+.. +-++|.||..++.|+.+....++. + -.+..+.|+-..++|.++..
T Consensus 503 ~~~~~~~~i~E~s~~~~~~i~~-----~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~ 577 (1034)
T KOG4150|consen 503 SKSEKSSKVVEVSHLFAEMVQH-----GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIES 577 (1034)
T ss_pred chhhhhhHHHHHHHHHHHHHHc-----CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHH
Confidence 122333344445555443 567999999999999876655432 1 13456889999999999999
Q ss_pred hhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEc
Q 007280 449 SFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN 509 (609)
Q Consensus 449 ~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~ 509 (609)
+.-.|+..-+|||++++-||||-.++.|++.++|-+++++.|..|||||.+++..++....
T Consensus 578 ~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 578 DLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred HhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999888766543
No 137
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.72 E-value=1.7e-17 Score=134.40 Aligned_cols=78 Identities=41% Similarity=0.810 Sum_probs=75.6
Q ss_pred HHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCC
Q 007280 422 HWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG 499 (609)
Q Consensus 422 ~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g 499 (609)
++|...++.+..+||++++.+|+.+++.|+++...|||||+++++|||+|.+++||++++|+++.+|+|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999986
No 138
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.72 E-value=8.6e-15 Score=160.77 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=83.6
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcC----CCcEEEEccccccCCCC---------
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSG----KTPILVATDVAARGLDI--------- 470 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g----~~~ILVaT~v~~~GlDi--------- 470 (609)
.+.+||.+.+.+.++.+++.|...--..+.+.|+.+ .+..++++|+.. ...||++|+.+.+|||+
T Consensus 470 ~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~ 547 (636)
T TIGR03117 470 QGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDK 547 (636)
T ss_pred CCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCC
Confidence 667999999999999999999654323445667542 456788888874 78899999999999999
Q ss_pred -CCccEEEEcCCCCC-------------------------HHHHHHHhhhcccCCCC---ceEEEEEcCCChhhHHHHHH
Q 007280 471 -PHVAHVVNFDLPND-------------------------IDDYVHRIGRTGRAGKS---GLATAFFNENNMSLARPLTE 521 (609)
Q Consensus 471 -p~v~~VI~~d~p~s-------------------------~~~y~QriGRagR~g~~---G~~~~f~~~~~~~~~~~l~~ 521 (609)
..+++||...+|.. +-.+.|-+||.-|.... |..+++-..-...+-+.+.+
T Consensus 548 G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~~~ 627 (636)
T TIGR03117 548 DNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESWQE 627 (636)
T ss_pred CCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHHHH
Confidence 23889998887732 12345889999997664 54444443433444444444
Q ss_pred HHH
Q 007280 522 LMQ 524 (609)
Q Consensus 522 ~l~ 524 (609)
..+
T Consensus 628 ~~~ 630 (636)
T TIGR03117 628 SVK 630 (636)
T ss_pred HHH
Confidence 443
No 139
>COG4889 Predicted helicase [General function prediction only]
Probab=99.71 E-value=1.1e-16 Score=171.81 Aligned_cols=358 Identities=17% Similarity=0.208 Sum_probs=201.3
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHhhHhCC----CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEc
Q 007280 155 ALNLNIRRCKYVKPTPVQRHAIPISIGG----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA 230 (609)
Q Consensus 155 ~l~~~i~~~~~~~pt~iQ~~~i~~i~~~----~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~ 230 (609)
++..++..+.-.+|+|+|+.||....++ ..--+.+.+|+|||...|- |.+.+.. .++|+|+
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~--------------~~iL~Lv 213 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA--------------ARILFLV 213 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh--------------hheEeec
Confidence 4455566666779999999999988753 1122334489999997553 4444433 1299999
Q ss_pred CcHHHHHHHHHHHHHhhccCCeEEEEEECCcChH-----------------------HHHHHH--hcCCCEEEeChHHHH
Q 007280 231 PTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPIN-----------------------QQLREL--ERGVDILVATPGRLV 285 (609)
Q Consensus 231 Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~-----------------------~~~~~l--~~~~~IlV~Tpg~L~ 285 (609)
|+..|..|..++...- ....++...++...... +.+... ..+.-|+++|++.|.
T Consensus 214 PSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~ 292 (1518)
T COG4889 214 PSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP 292 (1518)
T ss_pred chHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH
Confidence 9999999986554432 12234444444332211 111111 124679999999998
Q ss_pred HHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcC-CCCCCCceEEEEEeecc---H-----------------
Q 007280 286 DLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD-MPPPGMRQTMLFSATFP---K----------------- 344 (609)
Q Consensus 286 ~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~-~~~~~~~q~il~SAT~~---~----------------- 344 (609)
..-+....-+..+++||+|||||-........=..-+..+. ...-+..+.+.|+||+. .
T Consensus 293 ~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMD 372 (1518)
T COG4889 293 RIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMD 372 (1518)
T ss_pred HHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccc
Confidence 87776667788999999999998542111000000000000 00001123466677742 0
Q ss_pred -------H------HHHHHHHhhcCcEEEEecccCCcccc-eeEEEEEEeccchHHHHHHHHHHH---Hh-cCcC-----
Q 007280 345 -------E------IQRLASDFLANYIFLAVGRVGSSTDL-IVQRVEFVHESDKRSHLMDLLHAQ---VA-NGVH----- 401 (609)
Q Consensus 345 -------~------~~~l~~~~l~~~~~~~~~~~~~~~~~-i~q~~~~~~~~~k~~~l~~~l~~~---~~-~~~~----- 401 (609)
+ -+...+.+|.+|..+........... +.+...-.....+.+..-.++-.. .. ...+
T Consensus 373 De~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~ 452 (1518)
T COG4889 373 DELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKN 452 (1518)
T ss_pred hhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccC
Confidence 0 02223445555544333211111111 111111111111122221111111 00 0000
Q ss_pred -----CCCceEEEEecchhhHHHHHHHHH-----------h--CCCCcE--EecCccCHHHHHHHHH---hhhcCCCcEE
Q 007280 402 -----GKQALTLVFVETKKGADALEHWLY-----------M--NGFPAT--TIHGDRTQQERELALR---SFKSGKTPIL 458 (609)
Q Consensus 402 -----~~~~k~lVF~~t~~~~~~l~~~L~-----------~--~~~~~~--~ihg~~~~~~R~~~~~---~F~~g~~~IL 458 (609)
.+-.+.|-||.++++...+++.+. . .++.+. .+.|.|+..+|.+.+. .|....++||
T Consensus 453 ~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIl 532 (1518)
T COG4889 453 IKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKIL 532 (1518)
T ss_pred CcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheee
Confidence 012346889988887777665542 1 133333 4568899888866654 4567889999
Q ss_pred EEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCC---CceEEEEEc-------------CCChhhHHHHHHH
Q 007280 459 VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK---SGLATAFFN-------------ENNMSLARPLTEL 522 (609)
Q Consensus 459 VaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~---~G~~~~f~~-------------~~~~~~~~~l~~~ 522 (609)
--...+++|+|+|.++.||+||+-+++.+.+|.+||+.|--. -|..|+-+- ..+...+.++.+.
T Consensus 533 SNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnA 612 (1518)
T COG4889 533 SNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKA 612 (1518)
T ss_pred ccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999522 344443331 2233445556666
Q ss_pred HHHhcc
Q 007280 523 MQEANQ 528 (609)
Q Consensus 523 l~~~~q 528 (609)
|+....
T Consensus 613 LRShD~ 618 (1518)
T COG4889 613 LRSHDE 618 (1518)
T ss_pred HHhcCH
Confidence 665544
No 140
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=6.5e-15 Score=162.92 Aligned_cols=280 Identities=17% Similarity=0.157 Sum_probs=179.5
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.|+++|--.--++ .+.-|+.+.||-|||+++.+|++...+..+. |-||+++..||..-++++..+
T Consensus 85 r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~Gkg-------------VhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 85 RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALTGKG-------------VHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhcCCC-------------eEEEeCCHHHHHhHHHHHHHH
Confidence 5666775544344 4567899999999999999999877665542 899999999999999999999
Q ss_pred hccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-----HHHHHcc--cccccceEEEEeccchhhh-hcC-----
Q 007280 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-----VDLLERA--RVSLQMIRYLALDEADRML-DMG----- 313 (609)
Q Consensus 247 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-----~~~l~~~--~~~l~~i~~lVlDEah~~l-~~g----- 313 (609)
....++.|.++.++.+..+.. ..-.|||+++|+..| .|.+... ......+.+.|+||+|.+| |..
T Consensus 150 y~~LGLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLI 227 (939)
T PRK12902 150 HRFLGLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLI 227 (939)
T ss_pred HHHhCCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCccc
Confidence 999999999988776554333 344699999999877 4444321 1235678999999999855 211
Q ss_pred ----------CHHHHHHHHHHcCC------C--------------------------------CCC--------------
Q 007280 314 ----------FEPQIRKIVQQMDM------P--------------------------------PPG-------------- 331 (609)
Q Consensus 314 ----------f~~~i~~i~~~l~~------~--------------------------------~~~-------------- 331 (609)
.......++..+.. . ...
T Consensus 228 ISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~ 307 (939)
T PRK12902 228 ISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAK 307 (939)
T ss_pred ccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHH
Confidence 00111111111100 0 000
Q ss_pred ------------------------------------------------------------------CceEEEEEeeccHH
Q 007280 332 ------------------------------------------------------------------MRQTMLFSATFPKE 345 (609)
Q Consensus 332 ------------------------------------------------------------------~~q~il~SAT~~~~ 345 (609)
-.++..||.|...+
T Consensus 308 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te 387 (939)
T PRK12902 308 ELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTE 387 (939)
T ss_pred HHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHH
Confidence 00344556665444
Q ss_pred HHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHH
Q 007280 346 IQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLY 425 (609)
Q Consensus 346 ~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~ 425 (609)
..++...|--+.+.+ ...-.....-.....+.....|...+++.+..... ++.++||-+.+++..+.|+.+|.
T Consensus 388 ~~Ef~~iY~l~Vv~I--PTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~-----~GrPVLIgT~SVe~SE~ls~~L~ 460 (939)
T PRK12902 388 EVEFEKTYKLEVTVI--PTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHK-----QGRPVLVGTTSVEKSELLSALLQ 460 (939)
T ss_pred HHHHHHHhCCcEEEc--CCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCCEEEeeCCHHHHHHHHHHHH
Confidence 444444332222222 11111111111223344556777777766665432 47889999999999999999999
Q ss_pred hCCCCcEEecCccCHHHHHHHHHhhhcCC-CcEEEEccccccCCCCC
Q 007280 426 MNGFPATTIHGDRTQQERELALRSFKSGK-TPILVATDVAARGLDIP 471 (609)
Q Consensus 426 ~~~~~~~~ihg~~~~~~R~~~~~~F~~g~-~~ILVaT~v~~~GlDip 471 (609)
..+++..+++..-.+.+++..+-. ..|+ -.|-|||++|+||.||.
T Consensus 461 ~~gi~h~vLNAk~~~~~~EA~IIa-~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 461 EQGIPHNLLNAKPENVEREAEIVA-QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HcCCchheeeCCCcchHhHHHHHH-hcCCCCcEEEeccCCCCCcCEe
Confidence 999999999886333333333222 2454 35999999999999984
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.70 E-value=5.4e-15 Score=172.38 Aligned_cols=120 Identities=17% Similarity=0.158 Sum_probs=84.2
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCC--CcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCC--ccEEEEc
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGF--PATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPH--VAHVVNF 479 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~--~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~--v~~VI~~ 479 (609)
.+.+|||+++.+..+.+++.|..... ....+.-+++...|.++++.|+.+...||++|..+.+|||+|+ +.+||..
T Consensus 752 ~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~ 831 (928)
T PRK08074 752 KGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIV 831 (928)
T ss_pred CCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEe
Confidence 56799999999999999999975422 1222222333356889999999988889999999999999997 5788887
Q ss_pred CCCC----C--------------------------HHHHHHHhhhcccCCCCceEEEEEcCC--ChhhHHHHHHHH
Q 007280 480 DLPN----D--------------------------IDDYVHRIGRTGRAGKSGLATAFFNEN--NMSLARPLTELM 523 (609)
Q Consensus 480 d~p~----s--------------------------~~~y~QriGRagR~g~~G~~~~f~~~~--~~~~~~~l~~~l 523 (609)
.+|. + +..+.|.+||.-|..+.--++++++.. ...+-+.+.+.|
T Consensus 832 kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 832 RLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhC
Confidence 7664 1 122459999999987643345555542 334444444443
No 142
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.69 E-value=2.5e-16 Score=172.29 Aligned_cols=317 Identities=20% Similarity=0.264 Sum_probs=204.6
Q ss_pred CCCHHHHHHHhhHhC----CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISIG----GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~----~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
++.+||.+.+.++.+ +-+-|+..+||.|||.+ .|.++.++++.+....| -||++|+..|.++. .+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~~GP---------~LvivPlstL~NW~-~E 462 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQMQGP---------FLIIVPLSTLVNWS-SE 462 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcccCCC---------eEEeccccccCCch-hh
Confidence 678899999987653 45678999999999985 67788889988765544 69999999998764 56
Q ss_pred HHHhhccCCeEEEEEECCcChHHHHHH--HhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHH
Q 007280 243 AKKFSYQTGVKVVVAYGGAPINQQLRE--LERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK 320 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~~~~~~~--l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~ 320 (609)
+.+++. .+..+...|....+..+.. ....++||++|++.++. .+..+.--++.|+||||.|||.... .-+..
T Consensus 463 f~kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~ 536 (1157)
T KOG0386|consen 463 FPKWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTD 536 (1157)
T ss_pred cccccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHH
Confidence 666643 3555554444333222211 12358999999988765 2222233457899999999976421 11111
Q ss_pred HHHHcCCCCCCCceEEEEEeec----------------------------------------------------------
Q 007280 321 IVQQMDMPPPGMRQTMLFSATF---------------------------------------------------------- 342 (609)
Q Consensus 321 i~~~l~~~~~~~~q~il~SAT~---------------------------------------------------------- 342 (609)
.+.. . -.....++++.|+
T Consensus 537 ~L~t---~-y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkV 612 (1157)
T KOG0386|consen 537 TLNT---H-YRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKV 612 (1157)
T ss_pred Hhhc---c-ccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHh
Confidence 1110 0 0001112222221
Q ss_pred -----------------cHHHHHHHH-----------HhhcCcEEEEecc----cCC--c------------cccee---
Q 007280 343 -----------------PKEIQRLAS-----------DFLANYIFLAVGR----VGS--S------------TDLIV--- 373 (609)
Q Consensus 343 -----------------~~~~~~l~~-----------~~l~~~~~~~~~~----~~~--~------------~~~i~--- 373 (609)
|..++.+.+ ..+.+.-.+.++. .+. . .+.+.
T Consensus 613 LRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v 692 (1157)
T KOG0386|consen 613 LRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV 692 (1157)
T ss_pred hhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhh
Confidence 000000000 0000000000000 000 0 00000
Q ss_pred -EE-------EEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHH
Q 007280 374 -QR-------VEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 445 (609)
Q Consensus 374 -q~-------~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~ 445 (609)
.. ...+....|...|-.+|.+..+. ++++|.||......+.+.++|....+....+.|.....+|..
T Consensus 693 e~~~~~~~~~~dL~R~sGKfELLDRiLPKLkat-----gHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ 767 (1157)
T KOG0386|consen 693 ENSYTLHYDIKDLVRVSGKFELLDRILPKLKAT-----GHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGD 767 (1157)
T ss_pred ccccccccChhHHHHhccHHHHHHhhhHHHHhc-----CcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHH
Confidence 00 01122334555555555554433 788999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCc---EEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEc
Q 007280 446 ALRSFKSGKTP---ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN 509 (609)
Q Consensus 446 ~~~~F~~g~~~---ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~ 509 (609)
.++.|..-..+ +|++|.....|||+.-++.||.||..|++....|+.-||.|.|+.-.+-+|..
T Consensus 768 ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 768 LLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred HHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 99999876544 68899999999999999999999999999999999999999999887777754
No 143
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.69 E-value=8e-16 Score=138.45 Aligned_cols=144 Identities=44% Similarity=0.581 Sum_probs=108.7
Q ss_pred CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcC
Q 007280 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~ 262 (609)
++++++++||+|||.+++..+...+..... ..+||++|++.|+.|+.+.+.++... .+.+..+.+...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~-----------~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 68 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKG-----------GQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTS 68 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccC-----------CCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcc
Confidence 468999999999999887776665543111 23999999999999999998887654 677778788777
Q ss_pred hHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 007280 263 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (609)
Q Consensus 263 ~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~ 342 (609)
...........++|+|+|++.+...+.........+++||+||+|.+....+........... ....+++++|||+
T Consensus 69 ~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~----~~~~~~i~~saTp 144 (144)
T cd00046 69 IKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKL----PKDRQVLLLSATP 144 (144)
T ss_pred hhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhC----CccceEEEEeccC
Confidence 666665556679999999999988877665556678999999999988765444331222222 4456899999995
No 144
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.67 E-value=5e-15 Score=156.18 Aligned_cols=122 Identities=20% Similarity=0.320 Sum_probs=107.0
Q ss_pred ccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCc-EEE
Q 007280 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTP-ILV 459 (609)
Q Consensus 381 ~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~-ILV 459 (609)
+..|...|-++|...... +.++|+|++..++++.+.++|...++....+.|.....+|..++.+|+...+- +|+
T Consensus 1026 dSgKL~~LDeLL~kLkae-----gHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLL 1100 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAE-----GHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLL 1100 (1185)
T ss_pred cccceeeHHHHHHHhhcC-----CceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEE
Confidence 445666666666665433 78899999999999999999999999999999999999999999999986554 588
Q ss_pred EccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEE
Q 007280 460 ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF 507 (609)
Q Consensus 460 aT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f 507 (609)
+|.+.+-||++..++.||+||..|++..-.|...||.|.|+...++++
T Consensus 1101 STRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1101 STRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred ecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeee
Confidence 999999999999999999999999999999999999999997765544
No 145
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.67 E-value=8.2e-15 Score=161.26 Aligned_cols=105 Identities=18% Similarity=0.332 Sum_probs=95.5
Q ss_pred CCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCC--cEEEEccccccCCCCCCccEEEEcC
Q 007280 403 KQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT--PILVATDVAARGLDIPHVAHVVNFD 480 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~--~ILVaT~v~~~GlDip~v~~VI~~d 480 (609)
.+.++|||+...++.+.|..+|..+++..+.|.|...-++|+..+++|+.... ..|++|.....|||+...+.||+||
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEec
Confidence 37789999999999999999999999999999999999999999999998753 4788999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcccCCCCceEEEE
Q 007280 481 LPNDIDDYVHRIGRTGRAGKSGLATAF 507 (609)
Q Consensus 481 ~p~s~~~y~QriGRagR~g~~G~~~~f 507 (609)
-.||+.--.|..-|+.|.|+...+.++
T Consensus 1355 sDwNPtMDaQAQDrChRIGqtRDVHIY 1381 (1958)
T KOG0391|consen 1355 SDWNPTMDAQAQDRCHRIGQTRDVHIY 1381 (1958)
T ss_pred CCCCchhhhHHHHHHHhhcCccceEEE
Confidence 999999999999999999886655444
No 146
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.64 E-value=2e-13 Score=143.04 Aligned_cols=297 Identities=20% Similarity=0.233 Sum_probs=209.7
Q ss_pred cccceEEEEcCcHHHHHHHHHHHHHhhccC-CeE----EEEEEC--------------CcChHHHHHHHhc---------
Q 007280 221 TVYPLALILAPTRELSSQIHVEAKKFSYQT-GVK----VVVAYG--------------GAPINQQLRELER--------- 272 (609)
Q Consensus 221 ~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~-~i~----~~~~~g--------------g~~~~~~~~~l~~--------- 272 (609)
-..|+||||+|+|..|..+.+.+.+++... .+. ...-+| .....++...+-.
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 345889999999999999988887765441 000 000011 0111222222211
Q ss_pred ----------------CCCEEEeChHHHHHHHHc------ccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCC
Q 007280 273 ----------------GVDILVATPGRLVDLLER------ARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPP 330 (609)
Q Consensus 273 ----------------~~~IlV~Tpg~L~~~l~~------~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~ 330 (609)
..|||||+|=-|...+.. ....|++|.++|+|.||.|+... -+.+..+++.+...+.
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPK 193 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCC
Confidence 269999999999888874 23468999999999999776544 3667777777765432
Q ss_pred C--------------------CceEEEEEeeccHHHHHHHHHhhcCcE---EEEeccc-----CCcccceeEEEEEEecc
Q 007280 331 G--------------------MRQTMLFSATFPKEIQRLASDFLANYI---FLAVGRV-----GSSTDLIVQRVEFVHES 382 (609)
Q Consensus 331 ~--------------------~~q~il~SAT~~~~~~~l~~~~l~~~~---~~~~~~~-----~~~~~~i~q~~~~~~~~ 382 (609)
. -+|+|++|+...+++..+....+.++. .+..... ......+.|.+..++..
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 2 369999999999999999998776542 2221111 23334556666654422
Q ss_pred -------chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCC
Q 007280 383 -------DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT 455 (609)
Q Consensus 383 -------~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~ 455 (609)
.+...+.+.+...+.. ......+|||+++--+--.|..+|+..++....+|--.++.+-..+-..|..|+.
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~--~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~ 351 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKR--DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRK 351 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhh--ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCc
Confidence 2233333322222221 2346779999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccc--ccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCC------CceEEEEEcCCChhhHHHHH
Q 007280 456 PILVATDVA--ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK------SGLATAFFNENNMSLARPLT 520 (609)
Q Consensus 456 ~ILVaT~v~--~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~------~G~~~~f~~~~~~~~~~~l~ 520 (609)
+||+.|.-+ =+=..|.+|.+||.|.+|..+.-|...+.-...... ...|+++|+.-|.-.++.|+
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 999999654 466889999999999999999988887765544332 57999999998876666554
No 147
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.63 E-value=5.5e-15 Score=152.88 Aligned_cols=268 Identities=16% Similarity=0.163 Sum_probs=176.0
Q ss_pred CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcC
Q 007280 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~ 262 (609)
+-++-++||.||||.- +|+++...+. .++.-|.|-||..+++.+.+. ++.|-+++|...
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~aks-------------GvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~ 250 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKSAKS-------------GVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEER 250 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhhhcc-------------ceecchHHHHHHHHHHHhhhc----CCCcccccccee
Confidence 4467799999999986 6677765432 799999999999999888874 777777766543
Q ss_pred hHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 007280 263 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (609)
Q Consensus 263 ~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~ 342 (609)
....-. ...+..+-||.++.. .-..+++.||||++.|-|....=.+.+-+--+. ..+.+++.=
T Consensus 251 ~~~~~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~---AdEiHLCGe---- 313 (700)
T KOG0953|consen 251 RFVLDN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA---ADEIHLCGE---- 313 (700)
T ss_pred eecCCC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhh---hhhhhccCC----
Confidence 221110 112567778865431 134578999999999988764434333322221 122232221
Q ss_pred cHHHHHHHHHhhc---CcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHH
Q 007280 343 PKEIQRLASDFLA---NYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADA 419 (609)
Q Consensus 343 ~~~~~~l~~~~l~---~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~ 419 (609)
+.+..+.+.++. +.+.+ ..|+-.....-.+.++.-|... +.+-+ |.|-+++.+-.
T Consensus 314 -psvldlV~~i~k~TGd~vev-------------~~YeRl~pL~v~~~~~~sl~nl-------k~GDC-vV~FSkk~I~~ 371 (700)
T KOG0953|consen 314 -PSVLDLVRKILKMTGDDVEV-------------REYERLSPLVVEETALGSLSNL-------KPGDC-VVAFSKKDIFT 371 (700)
T ss_pred -chHHHHHHHHHhhcCCeeEE-------------EeecccCcceehhhhhhhhccC-------CCCCe-EEEeehhhHHH
Confidence 233344444433 21111 1121111111111222222221 13333 34556788888
Q ss_pred HHHHHHhCCCC-cEEecCccCHHHHHHHHHhhhc--CCCcEEEEccccccCCCCCCccEEEEcCCC---------CCHHH
Q 007280 420 LEHWLYMNGFP-ATTIHGDRTQQERELALRSFKS--GKTPILVATDVAARGLDIPHVAHVVNFDLP---------NDIDD 487 (609)
Q Consensus 420 l~~~L~~~~~~-~~~ihg~~~~~~R~~~~~~F~~--g~~~ILVaT~v~~~GlDip~v~~VI~~d~p---------~s~~~ 487 (609)
+...+...+.. +.+|+|+++++.|.+--..|++ +.++||||||++++|||+ +++-||.|++- -+..+
T Consensus 372 ~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sq 450 (700)
T KOG0953|consen 372 VKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQ 450 (700)
T ss_pred HHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHH
Confidence 88888887665 9999999999999999999987 899999999999999999 89999998874 36788
Q ss_pred HHHHhhhcccCCC---CceEEEEEcCC
Q 007280 488 YVHRIGRTGRAGK---SGLATAFFNEN 511 (609)
Q Consensus 488 y~QriGRagR~g~---~G~~~~f~~~~ 511 (609)
..|..|||||.|. .|.+++|..++
T Consensus 451 ikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 451 IKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred HHHHhhcccccccCCcCceEEEeeHhh
Confidence 8999999999864 67777776543
No 148
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.62 E-value=6.4e-14 Score=142.85 Aligned_cols=128 Identities=21% Similarity=0.247 Sum_probs=106.2
Q ss_pred cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcC-CCcE-EE
Q 007280 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSG-KTPI-LV 459 (609)
Q Consensus 382 ~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g-~~~I-LV 459 (609)
..|.+.|.+.|...... ....|.|||.+.....+.+.-.|...|+.|+.+.|.|+...|..+++.|++. .+.| ||
T Consensus 619 STKIEAL~EEl~~l~~r---d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLv 695 (791)
T KOG1002|consen 619 STKIEALVEELYFLRER---DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLV 695 (791)
T ss_pred hhHHHHHHHHHHHHHHc---ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEE
Confidence 34555566655544433 2367789999999999999999999999999999999999999999999976 4554 56
Q ss_pred EccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCC--CceEEEEEcCCC
Q 007280 460 ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK--SGLATAFFNENN 512 (609)
Q Consensus 460 aT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~--~G~~~~f~~~~~ 512 (609)
+-.+.+.-||+..+.+|+.+|+.|+++--.|...|..|.|| +=.++.|+-++.
T Consensus 696 SLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 696 SLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred EeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 66888899999999999999999999999999999999998 556777776654
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.59 E-value=7.7e-15 Score=139.10 Aligned_cols=152 Identities=24% Similarity=0.192 Sum_probs=99.9
Q ss_pred CCCHHHHHHHhhHhC-------CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHH
Q 007280 167 KPTPVQRHAIPISIG-------GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~-------~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi 239 (609)
+|+++|.+++..+.+ .+.+++.++||||||.+++..+ ..+.. .+||++|+..|+.|+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~-~~l~~---------------~~l~~~p~~~l~~Q~ 66 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALI-LELAR---------------KVLIVAPNISLLEQW 66 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHH-HHHHC---------------EEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhh-hcccc---------------ceeEecCHHHHHHHH
Confidence 589999999988773 5889999999999999876533 33333 299999999999999
Q ss_pred HHHHHHhhccCCeEEEE-----------EECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc-----------cccccc
Q 007280 240 HVEAKKFSYQTGVKVVV-----------AYGGAPINQQLRELERGVDILVATPGRLVDLLERA-----------RVSLQM 297 (609)
Q Consensus 240 ~~~~~~~~~~~~i~~~~-----------~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~-----------~~~l~~ 297 (609)
.+++..+.......... ..................+|+++|...|....... ......
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T PF04851_consen 67 YDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNK 146 (184)
T ss_dssp HHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGS
T ss_pred HHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcccc
Confidence 99997664332111100 01111111222222346799999999998776431 123456
Q ss_pred eEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeecc
Q 007280 298 IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 298 i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~ 343 (609)
.++||+||||++.... .+..++. . ....+|+||||+.
T Consensus 147 ~~~vI~DEaH~~~~~~---~~~~i~~-~-----~~~~~l~lTATp~ 183 (184)
T PF04851_consen 147 FDLVIIDEAHHYPSDS---SYREIIE-F-----KAAFILGLTATPF 183 (184)
T ss_dssp ESEEEEETGGCTHHHH---HHHHHHH-S-----SCCEEEEEESS-S
T ss_pred CCEEEEehhhhcCCHH---HHHHHHc-C-----CCCeEEEEEeCcc
Confidence 8899999999875432 1455555 2 3356899999975
No 150
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.58 E-value=3.9e-14 Score=157.91 Aligned_cols=319 Identities=18% Similarity=0.245 Sum_probs=203.7
Q ss_pred CCCCCHHHHHHHhhHhC-CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHH-HH
Q 007280 165 YVKPTPVQRHAIPISIG-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH-VE 242 (609)
Q Consensus 165 ~~~pt~iQ~~~i~~i~~-~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~-~~ 242 (609)
|...+|+|.++++.+.+ ++++++++|+|||||.++-++++. . ...-++++++|.-+.+.-.+ ..
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~-----------~~~~~~vyi~p~~~i~~~~~~~w 1206 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---P-----------DTIGRAVYIAPLEEIADEQYRDW 1206 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---C-----------ccceEEEEecchHHHHHHHHHHH
Confidence 34458999999998885 566899999999999998887664 1 11234999999999887665 45
Q ss_pred HHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcC---CH--HH
Q 007280 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG---FE--PQ 317 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~g---f~--~~ 317 (609)
.++|....|..++.+.|..+.... . ....+|+|+||+++..+ + ..+.+++.|.||+|.+.+.. ++ -.
T Consensus 1207 ~~~f~~~~G~~~~~l~ge~s~~lk--l-~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S 1278 (1674)
T KOG0951|consen 1207 EKKFSKLLGLRIVKLTGETSLDLK--L-LQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS 1278 (1674)
T ss_pred HHhhccccCceEEecCCccccchH--H-hhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee
Confidence 567777788888887777664332 2 23459999999998544 2 57889999999999876322 10 12
Q ss_pred HHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEe--cccCCcccceeEEEEEEeccchHHHHHHHHHHH
Q 007280 318 IRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAV--GRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQ 395 (609)
Q Consensus 318 i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~--~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~ 395 (609)
++.|..++ .++.+++.+|..+.+. ..++ .+...-.+.. .........-.|.+...........+.+.....
T Consensus 1279 ~r~ia~q~----~k~ir~v~ls~~lana-~d~i--g~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~a 1351 (1674)
T KOG0951|consen 1279 MRYIASQL----EKKIRVVALSSSLANA-RDLI--GASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTA 1351 (1674)
T ss_pred HHHHHHHH----HhheeEEEeehhhccc-hhhc--cccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHH
Confidence 56666666 4556788888877542 2221 1111111111 111111111122222222222222222222222
Q ss_pred HhcCcCCCCceEEEEecchhhHHHHHHHHHh----------------------CCCCcEEecCccCHHHHHHHHHhhhcC
Q 007280 396 VANGVHGKQALTLVFVETKKGADALEHWLYM----------------------NGFPATTIHGDRTQQERELALRSFKSG 453 (609)
Q Consensus 396 ~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~----------------------~~~~~~~ihg~~~~~~R~~~~~~F~~g 453 (609)
+.... ....+.+||+++++.|..++.-|.. ..++..+=|-+++..+...+-..|..|
T Consensus 1352 i~~~a-~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g 1430 (1674)
T KOG0951|consen 1352 IVRHA-GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAG 1430 (1674)
T ss_pred HHHHh-cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcC
Confidence 21111 1367799999999999887665421 112222338889999999999999999
Q ss_pred CCcEEEEccccccCCCCCCccEEE-----EcCC------CCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHH
Q 007280 454 KTPILVATDVAARGLDIPHVAHVV-----NFDL------PNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARP 518 (609)
Q Consensus 454 ~~~ILVaT~v~~~GlDip~v~~VI-----~~d~------p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~ 518 (609)
.+.|+|...- ..|+-... +.|| .||- +-.+.+..|++|+|.|+ |+|+++.......+.+.
T Consensus 1431 ~i~v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1431 AIQVCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred cEEEEEEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHH
Confidence 9999988755 66766643 3344 2332 34589999999999994 78999998877766554
No 151
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.57 E-value=1.2e-13 Score=146.51 Aligned_cols=120 Identities=15% Similarity=0.215 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhc--CCCcE-EEE
Q 007280 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS--GKTPI-LVA 460 (609)
Q Consensus 384 k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~--g~~~I-LVa 460 (609)
|...+++.+.... .....+++|..........+...|...++....|||.....+|+.+++.|.. |..+| |++
T Consensus 730 Ki~~~l~~le~i~----~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlS 805 (901)
T KOG4439|consen 730 KIAMVLEILETIL----TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLS 805 (901)
T ss_pred HHHHHHHHHHHHh----hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEE
Confidence 3444444444442 2246778888888888888889999999999999999999999999999975 43455 555
Q ss_pred ccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEE
Q 007280 461 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF 507 (609)
Q Consensus 461 T~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f 507 (609)
-...+.|||+-..+|+|.+|+-||++--.|...|..|.||+-.+++.
T Consensus 806 LtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 806 LTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred EccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 57889999999999999999999999999999999999998766554
No 152
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.57 E-value=9.3e-15 Score=118.98 Aligned_cols=81 Identities=48% Similarity=0.766 Sum_probs=77.3
Q ss_pred HHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccC
Q 007280 419 ALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 498 (609)
Q Consensus 419 ~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~ 498 (609)
.++++|...++.+..+||+++..+|..+++.|+++...|||+|+++++|+|+|.+++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 007280 499 G 499 (609)
Q Consensus 499 g 499 (609)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.56 E-value=9.8e-13 Score=149.73 Aligned_cols=118 Identities=20% Similarity=0.231 Sum_probs=83.7
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCCC-cEEecCccCHHHHHHHHHhhhcCCC-cEEEEccccccCCCCCC--ccEEEEc
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQQERELALRSFKSGKT-PILVATDVAARGLDIPH--VAHVVNF 479 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~~-~~~ihg~~~~~~R~~~~~~F~~g~~-~ILVaT~v~~~GlDip~--v~~VI~~ 479 (609)
+.++|||+++.+.++.+.+.|...... ....++.. .+.++++.|+...- .++|+|..+++|||+|+ +..||..
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 558999999999999999999876542 34455544 44578888887665 89999999999999987 5778887
Q ss_pred CCCC------------------------------CHHHHHHHhhhcccCCCCceEEEEEcCCC--hhhHHHHHHHHH
Q 007280 480 DLPN------------------------------DIDDYVHRIGRTGRAGKSGLATAFFNENN--MSLARPLTELMQ 524 (609)
Q Consensus 480 d~p~------------------------------s~~~y~QriGRagR~g~~G~~~~f~~~~~--~~~~~~l~~~l~ 524 (609)
.+|. .+....|.+||+-|.-+.--++++++..- ..+-+.|.+.+.
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~ 632 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLP 632 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCC
Confidence 7764 23345699999999755444455554422 223444444443
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=2.2e-12 Score=147.16 Aligned_cols=127 Identities=16% Similarity=0.241 Sum_probs=86.9
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCC-------CcEEecCccCHHHHHHHHHhhhc----CCCcEEEEc--cccccCCCC
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGF-------PATTIHGDRTQQERELALRSFKS----GKTPILVAT--DVAARGLDI 470 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~-------~~~~ihg~~~~~~R~~~~~~F~~----g~~~ILVaT--~v~~~GlDi 470 (609)
++.+|||+++....+.+.+.+...++ ..+.+-+ ....+++++++.|+. ++-.||+|+ ..+++|||+
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 56799999999999999988775432 1222222 222578999999965 455699999 889999999
Q ss_pred CC--ccEEEEcCCCC-CH------------------------------HHHHHHhhhcccCCCCceEEEEEcCCChhhHH
Q 007280 471 PH--VAHVVNFDLPN-DI------------------------------DDYVHRIGRTGRAGKSGLATAFFNENNMSLAR 517 (609)
Q Consensus 471 p~--v~~VI~~d~p~-s~------------------------------~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~ 517 (609)
++ ++.||.+.+|. ++ ....|.+||+-|.-++--++++++..-..
T Consensus 601 ~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~R~~~--- 677 (705)
T TIGR00604 601 CDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDKRYAR--- 677 (705)
T ss_pred CCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEehhcCC---
Confidence 87 78899998885 11 11249999999986654466666543211
Q ss_pred HHHHHHHHhcccchHHHHHHHhh
Q 007280 518 PLTELMQEANQEVPAWLNRYASR 540 (609)
Q Consensus 518 ~l~~~l~~~~q~vp~~l~~~a~~ 540 (609)
......+|.|+......
T Consensus 678 ------~~~~~~lp~W~~~~~~~ 694 (705)
T TIGR00604 678 ------SNKRKKLPKWIQDTIQS 694 (705)
T ss_pred ------cchhhhcCHHHHhhccc
Confidence 01235567777765543
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=4.4e-13 Score=149.99 Aligned_cols=126 Identities=19% Similarity=0.272 Sum_probs=99.1
Q ss_pred eccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcC-CCcEE
Q 007280 380 HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSG-KTPIL 458 (609)
Q Consensus 380 ~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g-~~~IL 458 (609)
....|...+++.+..... .+.++||-+.+++..+.|+.+|...+++..+++......+-+.+-+ .| .-.|-
T Consensus 609 t~~eK~~Aii~ei~~~~~-----~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVT 680 (1112)
T PRK12901 609 TKREKYNAVIEEITELSE-----AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVT 680 (1112)
T ss_pred CHHHHHHHHHHHHHHHHH-----CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEE
Confidence 344566666666655533 4888999999999999999999999999888887644333332222 33 34599
Q ss_pred EEccccccCCCCC--------CccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 459 VATDVAARGLDIP--------HVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 459 VaT~v~~~GlDip--------~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
|||++|+||.||. +==|||--..+.|..--.|..||+||.|.+|.+..|++-+|.
T Consensus 681 IATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 681 IATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred EeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 9999999999996 224799999999999999999999999999999999986653
No 156
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.54 E-value=2.1e-14 Score=155.19 Aligned_cols=315 Identities=18% Similarity=0.196 Sum_probs=193.4
Q ss_pred HHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeE
Q 007280 174 HAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVK 253 (609)
Q Consensus 174 ~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~ 253 (609)
..+..+..++.++|..+||+|||..+.--||..+++...... .-+.+..|||..+..+.+.+..= ..-.
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~--------~na~v~qprrisaisiaerva~e---r~e~ 453 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGAS--------FNAVVSQPRRISAISLAERVANE---RGEE 453 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccccc--------ccceeccccccchHHHHHHHHHh---hHHh
Confidence 344455567778999999999999988888888877653221 22788999999998887665431 1111
Q ss_pred EEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCc
Q 007280 254 VVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMR 333 (609)
Q Consensus 254 ~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~ 333 (609)
+.-.+|..... ....-..--.|++||.+-|+..++.. +..+.++|+||+|.-.-. ...++.++..+... ..+.
T Consensus 454 ~g~tvgy~vRf-~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~--~dfll~~lr~m~~t-y~dl 526 (1282)
T KOG0921|consen 454 VGETCGYNVRF-DSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVD--TDFVLIVLREMIST-YRDL 526 (1282)
T ss_pred hcccccccccc-cccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccc--hHHHHHHHHhhhcc-chhh
Confidence 11111111110 00000112379999999999998876 566889999999953211 12222333222211 2334
Q ss_pred eEEEEEeeccHH--------------------HHHHHHHhhcCcEEEEecccCCc------------cc------cee--
Q 007280 334 QTMLFSATFPKE--------------------IQRLASDFLANYIFLAVGRVGSS------------TD------LIV-- 373 (609)
Q Consensus 334 q~il~SAT~~~~--------------------~~~l~~~~l~~~~~~~~~~~~~~------------~~------~i~-- 373 (609)
.+++||||+..+ ++.+...++..++.......... .+ ++.
T Consensus 527 ~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~d 606 (1282)
T KOG0921|consen 527 RVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCD 606 (1282)
T ss_pred hhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccC
Confidence 455555555332 23333222222111111100000 00 000
Q ss_pred --------EEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC-------CCCcEEecCcc
Q 007280 374 --------QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-------GFPATTIHGDR 438 (609)
Q Consensus 374 --------q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~-------~~~~~~ihg~~ 438 (609)
.......+.+....|++.+...+.. .+-.+.++||.+-+..+-.|+.+|... .+++..+|+.+
T Consensus 607 d~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s--~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~ 684 (1282)
T KOG0921|consen 607 PSYNESTRTAMSRLSEKDIPFGLIEALLNDIAS--RNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQL 684 (1282)
T ss_pred hhhcchhhhhhhcchhhcchhHHHHHHHhhhcc--cCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhc
Confidence 0000001111222344444333332 223667999999999999999998643 57888999999
Q ss_pred CHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCC------------------CCCHHHHHHHhhhcccCCC
Q 007280 439 TQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDL------------------PNDIDDYVHRIGRTGRAGK 500 (609)
Q Consensus 439 ~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~------------------p~s~~~y~QriGRagR~g~ 500 (609)
..+++.++++....|..+||+.|.+++..+.|.++.+||..+. ..+..+.+||.||++|. +
T Consensus 685 ~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R 763 (1282)
T KOG0921|consen 685 TSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-R 763 (1282)
T ss_pred ccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-c
Confidence 9999999999999999999999999999999999888885443 12566788999999998 7
Q ss_pred CceEEEEEc
Q 007280 501 SGLATAFFN 509 (609)
Q Consensus 501 ~G~~~~f~~ 509 (609)
+|.|..+..
T Consensus 764 ~G~~f~lcs 772 (1282)
T KOG0921|consen 764 PGFCFHLCS 772 (1282)
T ss_pred ccccccccH
Confidence 899988865
No 157
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.53 E-value=6e-12 Score=142.63 Aligned_cols=104 Identities=20% Similarity=0.309 Sum_probs=74.7
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhc----CCCcEEEEccccccCCCCCC--ccEEE
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS----GKTPILVATDVAARGLDIPH--VAHVV 477 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~----g~~~ILVaT~v~~~GlDip~--v~~VI 477 (609)
.+.+|||+++.+..+.+++.|....-..+.+++. ..+.++++.|++ ++..||++|..+.+|||+|+ +++||
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEE
Confidence 4448999999999999999986432123455664 356778877764 67779999999999999987 78899
Q ss_pred EcCCCC----CH--------------------------HHHHHHhhhcccCCCCceEEEEEcC
Q 007280 478 NFDLPN----DI--------------------------DDYVHRIGRTGRAGKSGLATAFFNE 510 (609)
Q Consensus 478 ~~d~p~----s~--------------------------~~y~QriGRagR~g~~G~~~~f~~~ 510 (609)
...+|. ++ ..+.|.+||.-|....--++++++.
T Consensus 611 I~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~ 673 (697)
T PRK11747 611 ITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDR 673 (697)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcc
Confidence 877764 11 1235889999998654334444444
No 158
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.53 E-value=9.4e-13 Score=155.22 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=105.0
Q ss_pred chHHHHHHHH-HHHHhcCcCCCCc--eEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcC--CCcE
Q 007280 383 DKRSHLMDLL-HAQVANGVHGKQA--LTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSG--KTPI 457 (609)
Q Consensus 383 ~k~~~l~~~l-~~~~~~~~~~~~~--k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g--~~~I 457 (609)
.|...+.+++ ...... .. ++|||++.....+.+.++|...++....++|.++..+|..++++|.++ ..-+
T Consensus 692 ~k~~~l~~ll~~~~~~~-----~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~ 766 (866)
T COG0553 692 GKLQALDELLLDKLLEE-----GHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVF 766 (866)
T ss_pred hHHHHHHHHHHHHHHhh-----cccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceE
Confidence 4566666666 344332 34 899999999999999999999998899999999999999999999986 3446
Q ss_pred EEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcC
Q 007280 458 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 510 (609)
Q Consensus 458 LVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~ 510 (609)
|++|.+...|||....++||+||+.|++....|.+.|+.|.|++..+.++-..
T Consensus 767 lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i 819 (866)
T COG0553 767 LLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLI 819 (866)
T ss_pred EEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEee
Confidence 77789999999999999999999999999999999999999997766555443
No 159
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=8.2e-13 Score=136.13 Aligned_cols=352 Identities=21% Similarity=0.265 Sum_probs=231.9
Q ss_pred CCCCCHHHHHHHhhHhCCCCceee-ccCCCCc--hHHhHHHHHHHHHhhhccc-----C---------C----CCCcccc
Q 007280 165 YVKPTPVQRHAIPISIGGRDLMAC-AQTGSGK--TAAFCFPIISGIMREQYVQ-----R---------P----RGSRTVY 223 (609)
Q Consensus 165 ~~~pt~iQ~~~i~~i~~~~d~ii~-a~TGsGK--T~a~llpil~~l~~~~~~~-----~---------~----~~~~~~~ 223 (609)
-..+|+.|.+.+.++.+-+|++.. .-.+.|+ +-.|++.+|.++++....- + + +...-..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 346899999999999999998753 2234555 5679999999998643210 0 0 1112346
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCe-EE--------EEEECCc--------ChHHH--------------------
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGV-KV--------VVAYGGA--------PINQQ-------------------- 266 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i-~~--------~~~~gg~--------~~~~~-------------------- 266 (609)
|+||||||+|+-|..+...+..+.....- +. .--|+|. +..+.
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 99999999999999998888877433221 11 1112221 11111
Q ss_pred ---HHHHh--cCCCEEEeChHHHHHHHHc------ccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCC----
Q 007280 267 ---LRELE--RGVDILVATPGRLVDLLER------ARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPG---- 331 (609)
Q Consensus 267 ---~~~l~--~~~~IlV~Tpg~L~~~l~~------~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~---- 331 (609)
++.+. ...|||||+|=-|.-++.. ....|++|.++|+|.||.|+...+ +.+..|+.++...+..
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCC
Confidence 11111 1479999999988877763 123588999999999998886654 6677788777544322
Q ss_pred ----------------CceEEEEEeeccHHHHHHHHHhhcCcEEEEecc----c------CCcccceeEEEEEEe----c
Q 007280 332 ----------------MRQTMLFSATFPKEIQRLASDFLANYIFLAVGR----V------GSSTDLIVQRVEFVH----E 381 (609)
Q Consensus 332 ----------------~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~----~------~~~~~~i~q~~~~~~----~ 381 (609)
-+|+++||+-....+..+...++.+..-....+ . ......+.+.+..-. .
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 259999999988888888777776542221111 1 111111222222111 1
Q ss_pred cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEc
Q 007280 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVAT 461 (609)
Q Consensus 382 ~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT 461 (609)
..+...+.+.+--.+.. ....-+||+.++.-.--.+..+|+...+....||--.++..-..+-+-|-.|...||+-|
T Consensus 533 D~RFkyFv~~ImPq~~k---~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyT 609 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIK---RTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYT 609 (698)
T ss_pred hHHHHHHHHhhchhhcc---cccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEe
Confidence 22233333322211111 113447999999999999999999998888888877777777788888999999999999
Q ss_pred ccc--ccCCCCCCccEEEEcCCCCCHHHH---HHHhhhcccCCC----CceEEEEEcCCChhhHHHHH
Q 007280 462 DVA--ARGLDIPHVAHVVNFDLPNDIDDY---VHRIGRTGRAGK----SGLATAFFNENNMSLARPLT 520 (609)
Q Consensus 462 ~v~--~~GlDip~v~~VI~~d~p~s~~~y---~QriGRagR~g~----~G~~~~f~~~~~~~~~~~l~ 520 (609)
.-+ -+-.+|.+|..||.|.+|+++.=| +-+++|+.-.|+ .-.|.++|++-|.-.+..++
T Consensus 610 ER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 610 ERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred hhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 655 477899999999999999998765 566667654332 45899999998876555543
No 160
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.50 E-value=1e-12 Score=147.90 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=65.7
Q ss_pred EEEEecchhhHHHHHHHHHhC----C--CCcEEecCccCHHHHHHHHHhh----------------------hc----CC
Q 007280 407 TLVFVETKKGADALEHWLYMN----G--FPATTIHGDRTQQERELALRSF----------------------KS----GK 454 (609)
Q Consensus 407 ~lVF~~t~~~~~~l~~~L~~~----~--~~~~~ihg~~~~~~R~~~~~~F----------------------~~----g~ 454 (609)
.||-+.+++.+-.++..|... + +.+..||+......|..+.+.. ++ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 367777777777777777643 2 3467889998777666655442 11 35
Q ss_pred CcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCC
Q 007280 455 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK 500 (609)
Q Consensus 455 ~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~ 500 (609)
..|+|+|.|++.|+|+ +.+.+| .-|.+++..+||.||+.|.+.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 6799999999999999 344443 345679999999999999765
No 161
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.47 E-value=1.4e-12 Score=145.17 Aligned_cols=287 Identities=12% Similarity=0.050 Sum_probs=167.3
Q ss_pred eeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHH
Q 007280 186 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQ 265 (609)
Q Consensus 186 ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~ 265 (609)
+..+-+|||||.+|+-.+-..+...+ .+|||+|...|+.|+.+.+++... ...+.+++.+.+..+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk-------------~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~ 228 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGR-------------GALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPAD 228 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCC-------------eEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHH
Confidence 33444699999988775544443322 299999999999999888887642 156888888887766
Q ss_pred HHHHHh---c-CCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhh---cCCHHHHHHHHHHcCCCCCCCceEEEE
Q 007280 266 QLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD---MGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (609)
Q Consensus 266 ~~~~l~---~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~---~gf~~~i~~i~~~l~~~~~~~~q~il~ 338 (609)
..+.+. . ...|+|+|-..++ ..+.++.+||+||-|.-.- ....-..+.+...... .....+|+.
T Consensus 229 R~~~w~~~~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~--~~~~~lvLg 299 (665)
T PRK14873 229 RYRRWLAVLRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH--QHGCALLIG 299 (665)
T ss_pred HHHHHHHHhCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH--HcCCcEEEE
Confidence 655443 3 3789999955442 3588899999999995331 1111122322221110 234679999
Q ss_pred EeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccc-------------hHHHHHHHHHHHHhcCcCCCCc
Q 007280 339 SATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD-------------KRSHLMDLLHAQVANGVHGKQA 405 (609)
Q Consensus 339 SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~-------------k~~~l~~~l~~~~~~~~~~~~~ 405 (609)
|||.+-+....+.. ..+..+......... ....+.+++... -...+++.+.+.... +
T Consensus 300 SaTPSles~~~~~~--g~~~~~~~~~~~~~~--~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~-----g- 369 (665)
T PRK14873 300 GHARTAEAQALVES--GWAHDLVAPRPVVRA--RAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEH-----G- 369 (665)
T ss_pred CCCCCHHHHHHHhc--CcceeeccccccccC--CCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhc-----C-
Confidence 99988776555442 222222211111101 111122222110 113456666666542 4
Q ss_pred eEEEEecchhhHHHHHHHHHhCCCC------cEEecCc-------------------------c------C---------
Q 007280 406 LTLVFVETKKGADALEHWLYMNGFP------ATTIHGD-------------------------R------T--------- 439 (609)
Q Consensus 406 k~lVF~~t~~~~~~l~~~L~~~~~~------~~~ihg~-------------------------~------~--------- 439 (609)
++|||+|.+-.+..+...=+..-.. ...+|.. + +
T Consensus 370 qvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~ 449 (665)
T PRK14873 370 PVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGR 449 (665)
T ss_pred cEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHH
Confidence 8999999876655432221110000 0001100 0 0
Q ss_pred --------HHHHHHHHHhhhcCCCcEEEEcc----ccccCCCCCCccEEEEcCCCC------------CHHHHHHHhhhc
Q 007280 440 --------QQERELALRSFKSGKTPILVATD----VAARGLDIPHVAHVVNFDLPN------------DIDDYVHRIGRT 495 (609)
Q Consensus 440 --------~~~R~~~~~~F~~g~~~ILVaT~----v~~~GlDip~v~~VI~~d~p~------------s~~~y~QriGRa 495 (609)
..+++.+++.|. ++.+|||+|. +++ +++++|+..|... ....+.|-.||+
T Consensus 450 ~FP~~~V~r~d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagra 523 (665)
T PRK14873 450 AFPGVPVVTSGGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALV 523 (665)
T ss_pred HCCCCCEEEEChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhh
Confidence 013445778886 4899999998 555 3667777666431 244567999999
Q ss_pred ccCCCCceEEEEEcCCC
Q 007280 496 GRAGKSGLATAFFNENN 512 (609)
Q Consensus 496 gR~g~~G~~~~f~~~~~ 512 (609)
||..+.|.+++..++++
T Consensus 524 gr~~~~G~V~iq~~p~~ 540 (665)
T PRK14873 524 RPRADGGQVVVVAESSL 540 (665)
T ss_pred cCCCCCCEEEEEeCCCC
Confidence 99989999998864443
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.45 E-value=7.4e-12 Score=137.71 Aligned_cols=293 Identities=17% Similarity=0.217 Sum_probs=178.4
Q ss_pred CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcC
Q 007280 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~ 262 (609)
.-.+|.+|+|||||.+. +..+...+.... -.+|+|+.++.|+.+++..+++.... ++ +.|....
T Consensus 50 ~V~vVRSpMGTGKTtaL-i~wLk~~l~~~~-----------~~VLvVShRrSL~~sL~~rf~~~~l~-gF---v~Y~d~~ 113 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTAL-IRWLKDALKNPD-----------KSVLVVSHRRSLTKSLAERFKKAGLS-GF---VNYLDSD 113 (824)
T ss_pred CeEEEECCCCCCcHHHH-HHHHHHhccCCC-----------CeEEEEEhHHHHHHHHHHHHhhcCCC-cc---eeeeccc
Confidence 34679999999999863 333433322111 12999999999999998888764221 11 1222221
Q ss_pred hHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHH---HHHHcCCCCCCCceEEEEE
Q 007280 263 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK---IVQQMDMPPPGMRQTMLFS 339 (609)
Q Consensus 263 ~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~---i~~~l~~~~~~~~q~il~S 339 (609)
.. .+. .+..+-|++..+.|..+.. ..+.++++|||||+-..+..-|.+.+++ +++.+...-.....+|++-
T Consensus 114 ~~-~i~--~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~D 187 (824)
T PF02399_consen 114 DY-IID--GRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMD 187 (824)
T ss_pred cc-ccc--ccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEec
Confidence 10 010 1135788888888766532 2367799999999998776544333222 1221111113346799999
Q ss_pred eeccHHHHHHHHHhhcC-cEEEEecccCCcccceeEEEEEEe-----------------------------------ccc
Q 007280 340 ATFPKEIQRLASDFLAN-YIFLAVGRVGSSTDLIVQRVEFVH-----------------------------------ESD 383 (609)
Q Consensus 340 AT~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~i~q~~~~~~-----------------------------------~~~ 383 (609)
||+.....++++.+..+ .+.+.+....... .......++. ...
T Consensus 188 A~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~-fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (824)
T PF02399_consen 188 ADLNDQTVDFLASCRPDENIHVIVNTYASPG-FSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISN 266 (824)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEEeeeecCC-cccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccccccccc
Confidence 99999999988887543 3333332211100 0000000000 001
Q ss_pred hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccc
Q 007280 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 463 (609)
Q Consensus 384 k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v 463 (609)
....++..|...+.. +.++-||+.|+..++.++++.......+..+++..+..+. +.| ++.+|+|-|.+
T Consensus 267 ~~~tF~~~L~~~L~~-----gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~ 335 (824)
T PF02399_consen 267 DETTFFSELLARLNA-----GKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPV 335 (824)
T ss_pred chhhHHHHHHHHHhC-----CCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEece
Confidence 122445555554433 5568899999999999999998888888888887665532 223 46889999999
Q ss_pred cccCCCCCCccE--EEEcCCC----CCHHHHHHHhhhcccCCCCceEEEEEcC
Q 007280 464 AARGLDIPHVAH--VVNFDLP----NDIDDYVHRIGRTGRAGKSGLATAFFNE 510 (609)
Q Consensus 464 ~~~GlDip~v~~--VI~~d~p----~s~~~y~QriGRagR~g~~G~~~~f~~~ 510 (609)
+..|+++....+ |+-|=-| .++.+..|++||+=.. .....+++++.
T Consensus 336 itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~ 387 (824)
T PF02399_consen 336 ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDA 387 (824)
T ss_pred EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEec
Confidence 999999976543 4433222 2566789999999444 45667777764
No 163
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.45 E-value=5e-12 Score=137.46 Aligned_cols=119 Identities=21% Similarity=0.247 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC----------------------CCCcEEecCccCHH
Q 007280 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN----------------------GFPATTIHGDRTQQ 441 (609)
Q Consensus 384 k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~----------------------~~~~~~ihg~~~~~ 441 (609)
|...|+++|.....- +.++|||.++....+.+..+|... |.....|.|..+..
T Consensus 1127 KmiLLleIL~mceeI-----GDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~ 1201 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEI-----GDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQ 1201 (1567)
T ss_pred ceehHHHHHHHHHHh-----cceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHH
Confidence 334566666544322 778999999999999999998632 44567789999999
Q ss_pred HHHHHHHhhhcCC----CcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEE
Q 007280 442 ERELALRSFKSGK----TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF 507 (609)
Q Consensus 442 ~R~~~~~~F~~g~----~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f 507 (609)
+|+...++|.+-. .-.||+|.+.+-|||+-.++-||.||..||+..-.|-|=|+.|.||.--||++
T Consensus 1202 ~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1202 SRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9999999998642 23799999999999999999999999999999999999999999997777665
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.27 E-value=4.1e-11 Score=122.96 Aligned_cols=156 Identities=21% Similarity=0.201 Sum_probs=92.4
Q ss_pred HHHHHHhhHh-------------CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHH
Q 007280 171 VQRHAIPISI-------------GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (609)
Q Consensus 171 iQ~~~i~~i~-------------~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 237 (609)
+|.+++..++ ..+.+|++.++|+|||+..+. ++..+........ .-.+|||||. .+..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~~~~-------~~~~LIv~P~-~l~~ 71 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIA-LISYLKNEFPQRG-------EKKTLIVVPS-SLLS 71 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHH-HHHHHHHCCTTSS--------S-EEEEE-T-TTHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhh-hhhhhhhcccccc-------ccceeEeecc-chhh
Confidence 5777776553 335689999999999997554 4444443322110 0128999999 7789
Q ss_pred HHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHc---ccccccceEEEEeccchhhhhcCC
Q 007280 238 QIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER---ARVSLQMIRYLALDEADRMLDMGF 314 (609)
Q Consensus 238 Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~---~~~~l~~i~~lVlDEah~~l~~gf 314 (609)
||..++.++.....+++.++.+...............+|+|+|++.+...... ..+..-.+++||+||+|.+-+..
T Consensus 72 ~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~- 150 (299)
T PF00176_consen 72 QWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD- 150 (299)
T ss_dssp HHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT-
T ss_pred hhhhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc-
Confidence 99999999986555677766555512222223334689999999999811000 11112348999999999985433
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEEeec
Q 007280 315 EPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (609)
Q Consensus 315 ~~~i~~i~~~l~~~~~~~~q~il~SAT~ 342 (609)
......+..+. ....+++|||+
T Consensus 151 -s~~~~~l~~l~-----~~~~~lLSgTP 172 (299)
T PF00176_consen 151 -SKRYKALRKLR-----ARYRWLLSGTP 172 (299)
T ss_dssp -SHHHHHHHCCC-----ECEEEEE-SS-
T ss_pred -ccccccccccc-----cceEEeecccc
Confidence 34444444452 45689999996
No 165
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.22 E-value=2.8e-09 Score=124.28 Aligned_cols=301 Identities=17% Similarity=0.164 Sum_probs=165.0
Q ss_pred CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcC
Q 007280 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~ 262 (609)
+.-+|+--||||||+..+. +...+.+. ...|.++||+-+++|-.|+.+++..+........ ...+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~----------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s 338 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLEL----------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAES 338 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhc----------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccC
Confidence 3578999999999997544 33334333 1236699999999999999999999865533222 2334
Q ss_pred hHHHHHHHhcC-CCEEEeChHHHHHHHHccc--ccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEE
Q 007280 263 INQQLRELERG-VDILVATPGRLVDLLERAR--VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (609)
Q Consensus 263 ~~~~~~~l~~~-~~IlV~Tpg~L~~~l~~~~--~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~S 339 (609)
..+-.+.++.. -.|+|+|-+.|-..+.... ..-..==+||+|||||- .+...-..+-..+ +....+.||
T Consensus 339 ~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~-----~~a~~~gFT 410 (962)
T COG0610 339 TSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKAL-----KKAIFIGFT 410 (962)
T ss_pred HHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHh-----ccceEEEee
Confidence 34444444533 3899999999988776541 11122236899999983 2333333333333 225789999
Q ss_pred eeccHHHHHH-HHHhhcCcEEEEecccCCcccce-eEEEEEE------ecc-----------------------------
Q 007280 340 ATFPKEIQRL-ASDFLANYIFLAVGRVGSSTDLI-VQRVEFV------HES----------------------------- 382 (609)
Q Consensus 340 AT~~~~~~~l-~~~~l~~~~~~~~~~~~~~~~~i-~q~~~~~------~~~----------------------------- 382 (609)
.|+-..-... ......++++...-........+ ...+... ...
T Consensus 411 GTPi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 490 (962)
T COG0610 411 GTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKN 490 (962)
T ss_pred CCccccccccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhh
Confidence 9963211111 12223333332221111111111 1111110 000
Q ss_pred --------chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCC-------------------C----Cc
Q 007280 383 --------DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG-------------------F----PA 431 (609)
Q Consensus 383 --------~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~-------------------~----~~ 431 (609)
.+......-+..++.. ......++++.+.++..+..+.+...... + ..
T Consensus 491 ~~~~~~~~~r~~~~a~~i~~~f~~-~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 569 (962)
T COG0610 491 LEFLAMLAVRLIRAAKDIYDHFKK-EEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDK 569 (962)
T ss_pred hhHHhcchHHHHHHHHHHHHHHHh-hcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhh
Confidence 0000111112222222 23346677877777774444443332110 0 00
Q ss_pred EEecCccCHHHHHHHHHh--hhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCC----CceEE
Q 007280 432 TTIHGDRTQQERELALRS--FKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK----SGLAT 505 (609)
Q Consensus 432 ~~ihg~~~~~~R~~~~~~--F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~----~G~~~ 505 (609)
...|.. ....+.....+ .+....+|||.+|++-+|.|.|.+++ +.+|-|----..+|.+-||.|.-. .|..+
T Consensus 570 ~~~~~~-~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~T-mYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IV 647 (962)
T COG0610 570 KQSHAK-LKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNT-LYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIV 647 (962)
T ss_pred hhhhHH-HHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccce-EEeccccccchHHHHHHHhccCCCCCCCCcEEE
Confidence 001222 22334444455 34567889999999999999997664 556777777889999999999532 34455
Q ss_pred EEEc
Q 007280 506 AFFN 509 (609)
Q Consensus 506 ~f~~ 509 (609)
-|..
T Consensus 648 Df~g 651 (962)
T COG0610 648 DFRG 651 (962)
T ss_pred ECcc
Confidence 5544
No 166
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.14 E-value=1.7e-09 Score=120.12 Aligned_cols=321 Identities=17% Similarity=0.199 Sum_probs=195.8
Q ss_pred CCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhh
Q 007280 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (609)
Q Consensus 168 pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~ 247 (609)
++|+-.+.|-.+.-+..-|+-..||-|||+++.+|+.-..+..+. +.||...--||.--.+++.++.
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkg-------------VhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKG-------------VHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCC-------------cEEeeehHHhhhhCHHHHHHHH
Confidence 344444455555555667889999999999999998766655432 7778888889988889999999
Q ss_pred ccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHc------ccccccceEEEEeccchhhh-hc-------
Q 007280 248 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLER------ARVSLQMIRYLALDEADRML-DM------- 312 (609)
Q Consensus 248 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~------~~~~l~~i~~lVlDEah~~l-~~------- 312 (609)
...++.+.+...+.+..+....+. |||.++|-..| .|.|.. .......+.+.|+||+|.++ |.
T Consensus 146 ~~LGlsvG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiI 223 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLII 223 (822)
T ss_pred HHcCCceeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceee
Confidence 999999999988887666555544 99999998765 222221 11224457899999999755 11
Q ss_pred -C---C----HHHHHHHHHHcCCCC-----CC------------------------------------------------
Q 007280 313 -G---F----EPQIRKIVQQMDMPP-----PG------------------------------------------------ 331 (609)
Q Consensus 313 -g---f----~~~i~~i~~~l~~~~-----~~------------------------------------------------ 331 (609)
| . ...+..++..+.... ..
T Consensus 224 SG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D 303 (822)
T COG0653 224 SGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRD 303 (822)
T ss_pred ecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcC
Confidence 1 1 122222222221000 00
Q ss_pred ------CceEEE------------------------------------------------------EEeeccHHHHHHHH
Q 007280 332 ------MRQTML------------------------------------------------------FSATFPKEIQRLAS 351 (609)
Q Consensus 332 ------~~q~il------------------------------------------------------~SAT~~~~~~~l~~ 351 (609)
+-.+++ ||.|...+..++..
T Consensus 304 ~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~ 383 (822)
T COG0653 304 VDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDV 383 (822)
T ss_pred CeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhh
Confidence 001111 11111111111111
Q ss_pred HhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCc
Q 007280 352 DFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPA 431 (609)
Q Consensus 352 ~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~ 431 (609)
.|.-+.+.+...+ .....-.....+.....|...+++.+..... ++.++||-+.+++..+.+.+.|.+.+++.
T Consensus 384 iY~l~vv~iPTnr--p~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~-----~gqPvLvgT~sie~SE~ls~~L~~~~i~h 456 (822)
T COG0653 384 IYGLDVVVIPTNR--PIIRLDEPDLVYKTEEEKFKAIVEDIKERHE-----KGQPVLVGTVSIEKSELLSKLLRKAGIPH 456 (822)
T ss_pred ccCCceeeccCCC--cccCCCCccccccchHHHHHHHHHHHHHHHh-----cCCCEEEcCcceecchhHHHHHHhcCCCc
Confidence 1111111111100 0001111122233455666666666665543 48889999999999999999999999999
Q ss_pred EEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCcc-----------EEEEcCCCCCHHHHHHHhhhcccCCC
Q 007280 432 TTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVA-----------HVVNFDLPNDIDDYVHRIGRTGRAGK 500 (609)
Q Consensus 432 ~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~-----------~VI~~d~p~s~~~y~QriGRagR~g~ 500 (609)
..+...-. .++.-+-.+.--.--|-|||++|+||-||.--. +||--..-.|..--.|..||+||.|-
T Consensus 457 ~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 457 NVLNAKNH--AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred eeeccccH--HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 88876544 344333333322334889999999999995322 35544444455555699999999999
Q ss_pred CceEEEEEcCCC
Q 007280 501 SGLATAFFNENN 512 (609)
Q Consensus 501 ~G~~~~f~~~~~ 512 (609)
+|.+-.|++-+|
T Consensus 535 pG~S~F~lSleD 546 (822)
T COG0653 535 PGSSRFYLSLED 546 (822)
T ss_pred cchhhhhhhhHH
Confidence 998888876443
No 167
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.12 E-value=2.5e-10 Score=100.69 Aligned_cols=135 Identities=19% Similarity=0.204 Sum_probs=79.1
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCc
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~ 261 (609)
++-.++-..+|+|||.-.+--++...+..+ .++|||.|||.++..+++.++.. .+++... .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~------------~rvLvL~PTRvva~em~~aL~~~----~~~~~t~---~ 64 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRR------------LRVLVLAPTRVVAEEMYEALKGL----PVRFHTN---A 64 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--------------EEEEESSHHHHHHHHHHTTTS----SEEEEST---T
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHcc------------CeEEEecccHHHHHHHHHHHhcC----CcccCce---e
Confidence 444678899999999965554555444432 23999999999999987776553 3333211 1
Q ss_pred ChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcC--CHHHHHHHHHHcCCCCCCCceEEEEE
Q 007280 262 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFS 339 (609)
Q Consensus 262 ~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~g--f~~~i~~i~~~l~~~~~~~~q~il~S 339 (609)
... ....+.-|-|+|...+...+.+ ...+.++++||+||||-+--.. +.-.+..... .....+|+||
T Consensus 65 ~~~----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~------~g~~~~i~mT 133 (148)
T PF07652_consen 65 RMR----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE------SGEAKVIFMT 133 (148)
T ss_dssp SS--------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH------TTS-EEEEEE
T ss_pred eec----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhh------ccCeeEEEEe
Confidence 100 1123456889999998888766 5557899999999999632211 1222222211 2235699999
Q ss_pred eeccHHH
Q 007280 340 ATFPKEI 346 (609)
Q Consensus 340 AT~~~~~ 346 (609)
||+|-..
T Consensus 134 ATPPG~~ 140 (148)
T PF07652_consen 134 ATPPGSE 140 (148)
T ss_dssp SS-TT--
T ss_pred CCCCCCC
Confidence 9988643
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.10 E-value=9.7e-10 Score=111.72 Aligned_cols=73 Identities=18% Similarity=0.111 Sum_probs=56.9
Q ss_pred CCCHHHHHHHh----hHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 167 KPTPVQRHAIP----ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 167 ~pt~iQ~~~i~----~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
.|+|.|.+.+. .+.++.++|+.||||+|||+++++|++.++...+... ....++|+++|..+..|...+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-------~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-------QKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-------cccceeEEeccHHHHHHHHHH
Confidence 36999999554 5557889999999999999999999998876543210 012389999999999998777
Q ss_pred HHHh
Q 007280 243 AKKF 246 (609)
Q Consensus 243 ~~~~ 246 (609)
++++
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7765
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.10 E-value=9.7e-10 Score=111.72 Aligned_cols=73 Identities=18% Similarity=0.111 Sum_probs=56.9
Q ss_pred CCCHHHHHHHh----hHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 167 KPTPVQRHAIP----ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 167 ~pt~iQ~~~i~----~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
.|+|.|.+.+. .+.++.++|+.||||+|||+++++|++.++...+... ....++|+++|..+..|...+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-------~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-------QKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-------cccceeEEeccHHHHHHHHHH
Confidence 36999999554 5557889999999999999999999998876543210 012389999999999998777
Q ss_pred HHHh
Q 007280 243 AKKF 246 (609)
Q Consensus 243 ~~~~ 246 (609)
++++
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7765
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.94 E-value=1.5e-08 Score=100.54 Aligned_cols=130 Identities=20% Similarity=0.236 Sum_probs=96.7
Q ss_pred CCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHH
Q 007280 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (609)
Q Consensus 164 ~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~ 243 (609)
--..|+++|.-++-.+..|+ |+...||-|||++..+|++...+.... |=|++.+..||..=++++
T Consensus 74 ~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~-------------V~vvT~NdyLA~RD~~~~ 138 (266)
T PF07517_consen 74 LGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKG-------------VHVVTSNDYLAKRDAEEM 138 (266)
T ss_dssp TS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS--------------EEEEESSHHHHHHHHHHH
T ss_pred cCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCC-------------cEEEeccHHHhhccHHHH
Confidence 34579999998887776654 999999999999988888776665432 888899999999999999
Q ss_pred HHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHH-HHHHcc----cc--cccceEEEEeccchhhh
Q 007280 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLV-DLLERA----RV--SLQMIRYLALDEADRML 310 (609)
Q Consensus 244 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~-~~l~~~----~~--~l~~i~~lVlDEah~~l 310 (609)
..|...+++.+.+.+.+.+..+....+ .++|+++|...|. |.|... .. ....+.++|+||+|.|+
T Consensus 139 ~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 139 RPFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999999988755443333 3799999998874 444331 11 24678999999999876
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.93 E-value=3.1e-07 Score=104.65 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=58.0
Q ss_pred CCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccC--CCCc--------eEEEEEcCCChhhHHHHHHHH
Q 007280 454 KTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA--GKSG--------LATAFFNENNMSLARPLTELM 523 (609)
Q Consensus 454 ~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~--g~~G--------~~~~f~~~~~~~~~~~l~~~l 523 (609)
..+.|++-.++.+|.|-|+|-.++-+.-..+...-.|.+||.-|. .+.| .-.++.++....++..|.+-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 567999999999999999999999999888888999999999883 2222 234455677778888887766
Q ss_pred HHh
Q 007280 524 QEA 526 (609)
Q Consensus 524 ~~~ 526 (609)
++.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 554
No 172
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.83 E-value=1.5e-07 Score=107.13 Aligned_cols=66 Identities=21% Similarity=0.140 Sum_probs=51.8
Q ss_pred CCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 007280 273 GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (609)
Q Consensus 273 ~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~ 342 (609)
...|+++||..|..-|....+.+..|..||+||||++....-+..|.+++..- .+..-+.+|||.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~----n~~gfIkafSdsP 72 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQK----NKTGFIKAFSDNP 72 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHh----CCCcceEEecCCC
Confidence 46899999999988888888999999999999999988766566666666554 2233477777775
No 173
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.79 E-value=1.2e-07 Score=101.99 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=90.8
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCCC------------------cEEecCccCHHHHHHHHHhhhcCC---CcEEEEcc
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGFP------------------ATTIHGDRTQQERELALRSFKSGK---TPILVATD 462 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~~------------------~~~ihg~~~~~~R~~~~~~F~~g~---~~ILVaT~ 462 (609)
+.++|||....-..+.+.+.|....++ ...+.|..+..+|++++++|.+-. .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 567999999999999999999765332 234678888999999999998642 24788999
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcC
Q 007280 463 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 510 (609)
Q Consensus 463 v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~ 510 (609)
...-||++-..+-+|.||.-|++..-.|.+-|+.|.|+...|+++-.-
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlV 846 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLV 846 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeeh
Confidence 999999999999999999999999999999999999999888887543
No 174
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.76 E-value=1.1e-07 Score=105.96 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=92.3
Q ss_pred ceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCc--EEEEccccccCCCCCCccEEEEcCCC
Q 007280 405 ALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTP--ILVATDVAARGLDIPHVAHVVNFDLP 482 (609)
Q Consensus 405 ~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~--ILVaT~v~~~GlDip~v~~VI~~d~p 482 (609)
.++|||++-...++.++..|...++....+.|.|+...|.+.+..|..+... .|++......||++..+.||+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 4899999999999999999998899999999999999999999999965432 46778999999999999999999999
Q ss_pred CCHHHHHHHhhhcccCCCCceEEE
Q 007280 483 NDIDDYVHRIGRTGRAGKSGLATA 506 (609)
Q Consensus 483 ~s~~~y~QriGRagR~g~~G~~~~ 506 (609)
|++...-|.|-|+.|.|+.-.+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999999776655
No 175
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.58 E-value=3.2e-06 Score=93.00 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=58.2
Q ss_pred CCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccC--CCCce-----------EEEEEcCCChhhHHHH
Q 007280 453 GKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA--GKSGL-----------ATAFFNENNMSLARPL 519 (609)
Q Consensus 453 g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~--g~~G~-----------~~~f~~~~~~~~~~~l 519 (609)
...+.|++-.++-+|.|-|+|=.++-+....|...-.|-+||.-|. .+.|. -.++++..+..+++.|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3477999999999999999999999999999999999999999993 33443 3446667778888887
Q ss_pred HHHHH
Q 007280 520 TELMQ 524 (609)
Q Consensus 520 ~~~l~ 524 (609)
++-+.
T Consensus 562 qkEI~ 566 (985)
T COG3587 562 QKEIN 566 (985)
T ss_pred HHHHH
Confidence 75544
No 176
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.42 E-value=6e-08 Score=108.15 Aligned_cols=147 Identities=22% Similarity=0.294 Sum_probs=107.1
Q ss_pred CCCCHHHHHHHhhHhC-CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIG-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~-~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
....|+|.+.+-.+.. ..++++.+|||+|||++|.+.++..+...+. .++++++|-..|+..-.+...
T Consensus 926 ~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-----------~kvvyIap~kalvker~~Dw~ 994 (1230)
T KOG0952|consen 926 KYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-----------SKVVYIAPDKALVKERSDDWS 994 (1230)
T ss_pred cccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-----------ccEEEEcCCchhhcccccchh
Confidence 3566778877765553 5678999999999999999988765544332 129999999999887776666
Q ss_pred HhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHc--ccccccceEEEEeccchhhhhcCCHHHHHHHH
Q 007280 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER--ARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (609)
Q Consensus 245 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~--~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~ 322 (609)
+.....+++++-+.|..... ...+ ...+|+|+||+++..+... ....+.+++.+|+||.|.+.+ ++.+.++.++
T Consensus 995 ~r~~~~g~k~ie~tgd~~pd--~~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~iv 1070 (1230)
T KOG0952|consen 995 KRDELPGIKVIELTGDVTPD--VKAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIV 1070 (1230)
T ss_pred hhcccCCceeEeccCccCCC--hhhe-ecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEe
Confidence 65555589999988887654 1121 2479999999999888774 345688999999999996554 4456655555
Q ss_pred HHcCC
Q 007280 323 QQMDM 327 (609)
Q Consensus 323 ~~l~~ 327 (609)
....+
T Consensus 1071 sr~n~ 1075 (1230)
T KOG0952|consen 1071 SRMNY 1075 (1230)
T ss_pred ecccc
Confidence 54443
No 177
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.38 E-value=6.3e-06 Score=88.21 Aligned_cols=84 Identities=23% Similarity=0.218 Sum_probs=65.7
Q ss_pred HHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHH
Q 007280 159 NIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ 238 (609)
Q Consensus 159 ~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 238 (609)
.+...++.+++.-|..|+..+++..-.||++|.|+|||.+..- |+-++.+.... .+||++|...-+.|
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~~~~-----------~VLvcApSNiAVDq 469 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQHAG-----------PVLVCAPSNIAVDQ 469 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHhcCC-----------ceEEEcccchhHHH
Confidence 4455678889999999999999999999999999999987444 44555544221 29999999999999
Q ss_pred HHHHHHHhhccCCeEEEEEE
Q 007280 239 IHVEAKKFSYQTGVKVVVAY 258 (609)
Q Consensus 239 i~~~~~~~~~~~~i~~~~~~ 258 (609)
+++.+.+ ++++++-+.
T Consensus 470 LaeKIh~----tgLKVvRl~ 485 (935)
T KOG1802|consen 470 LAEKIHK----TGLKVVRLC 485 (935)
T ss_pred HHHHHHh----cCceEeeee
Confidence 9888877 466665543
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.23 E-value=7e-06 Score=80.63 Aligned_cols=74 Identities=23% Similarity=0.272 Sum_probs=49.3
Q ss_pred CCCHHHHHHHhhHhCCCC-ceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d-~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
++++-|.+||..++.... .+|.+|.|+|||.+ +..++..++.... .........+||++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~----~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFK----SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchh----hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 467899999999999888 89999999999974 3345555522100 00001123499999999999999888877
No 179
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.15 E-value=5.3e-06 Score=77.42 Aligned_cols=105 Identities=22% Similarity=0.259 Sum_probs=72.0
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCC--CcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc--ccccCCCCCC--ccEEE
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGF--PATTIHGDRTQQERELALRSFKSGKTPILVATD--VAARGLDIPH--VAHVV 477 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~--~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~--v~~~GlDip~--v~~VI 477 (609)
++.+|||+++.+..+.+.+.+..... ....+.- ...++.++++.|+.+...||+|+. .+.+|||+|+ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 67899999999999999998876531 1122222 356889999999999999999998 9999999996 77899
Q ss_pred EcCCCC----CH--------------------------HHHHHHhhhcccCCCCceEEEEEcC
Q 007280 478 NFDLPN----DI--------------------------DDYVHRIGRTGRAGKSGLATAFFNE 510 (609)
Q Consensus 478 ~~d~p~----s~--------------------------~~y~QriGRagR~g~~G~~~~f~~~ 510 (609)
...+|. ++ ....|.+||+-|..+.--++++++.
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 988874 11 1124899999998665445555554
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.15 E-value=8.5e-06 Score=78.13 Aligned_cols=124 Identities=16% Similarity=0.186 Sum_probs=71.5
Q ss_pred CCCHHHHHHHhhHhCCC--CceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISIGGR--DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~--d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
++++-|++++..++... -++++++.|+|||.+ +-.+...+...+ ..+++++||...+..+.+.+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~g------------~~v~~~apT~~Aa~~L~~~~- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAAG------------KRVIGLAPTNKAAKELREKT- 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHTT--------------EEEEESSHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhCC------------CeEEEECCcHHHHHHHHHhh-
Confidence 36889999999887543 477889999999984 333433333321 23999999988888765441
Q ss_pred HhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccc----cccceEEEEeccchhhhhcCCHHHHHH
Q 007280 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV----SLQMIRYLALDEADRMLDMGFEPQIRK 320 (609)
Q Consensus 245 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~----~l~~i~~lVlDEah~~l~~gf~~~i~~ 320 (609)
++. ..|-..++........ .+...++||||||-.+. ..++..
T Consensus 67 ------~~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ 112 (196)
T PF13604_consen 67 ------GIE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLAR 112 (196)
T ss_dssp ------TS-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHH
T ss_pred ------Ccc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHH
Confidence 111 2232222221111111 14556799999999653 367777
Q ss_pred HHHHcCCCCCCCceEEEEEee
Q 007280 321 IVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 321 i~~~l~~~~~~~~q~il~SAT 341 (609)
++..+.. ...++|++--+
T Consensus 113 ll~~~~~---~~~klilvGD~ 130 (196)
T PF13604_consen 113 LLRLAKK---SGAKLILVGDP 130 (196)
T ss_dssp HHHHS-T----T-EEEEEE-T
T ss_pred HHHHHHh---cCCEEEEECCc
Confidence 7777732 24566766655
No 181
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.14 E-value=1.9e-05 Score=78.84 Aligned_cols=173 Identities=14% Similarity=0.160 Sum_probs=104.2
Q ss_pred ccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHh----------CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCC
Q 007280 148 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPISI----------GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPR 217 (609)
Q Consensus 148 ~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~----------~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~ 217 (609)
-.+.|++.+... -.+...|-++|-.+. .+..+++-..||.||--...--|+.++++...
T Consensus 24 y~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~----- 92 (303)
T PF13872_consen 24 YRLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK----- 92 (303)
T ss_pred cccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC-----
Confidence 344667655432 246788888875443 23558899999999987544445555554321
Q ss_pred CCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc---ccc
Q 007280 218 GSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA---RVS 294 (609)
Q Consensus 218 ~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~---~~~ 294 (609)
++|+|+.+..|.....+.++.+... .+.+..+.. .... .. ..-.-.||++|+..|...-... ...
T Consensus 93 -------r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~-~~~~-~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sR 160 (303)
T PF13872_consen 93 -------RAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNK-FKYG-DI--IRLKEGVLFSTYSTLISESQSGGKYRSR 160 (303)
T ss_pred -------ceEEEECChhhhhHHHHHHHHhCCC-cccceechh-hccC-cC--CCCCCCccchhHHHHHhHHhccCCccch
Confidence 2899999999999988888877533 233332211 1100 00 1113469999999987764321 111
Q ss_pred cc---------ceEEEEeccchhhhhcCC--------HHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHH
Q 007280 295 LQ---------MIRYLALDEADRMLDMGF--------EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (609)
Q Consensus 295 l~---------~i~~lVlDEah~~l~~gf--------~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~ 348 (609)
++ .=.+|||||||++....- ...+..+-+.+ |. .++|.+|||...+...
T Consensus 161 l~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L----P~-ARvvY~SATgasep~N 226 (303)
T PF13872_consen 161 LDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL----PN-ARVVYASATGASEPRN 226 (303)
T ss_pred HHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC----CC-CcEEEecccccCCCce
Confidence 11 124899999999876532 12333444444 33 3599999998665443
No 182
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.05 E-value=5.7e-05 Score=72.79 Aligned_cols=151 Identities=21% Similarity=0.299 Sum_probs=95.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhC---CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccc
Q 007280 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIG---GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (609)
Q Consensus 146 ~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~---~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~ 222 (609)
.|.....+++|+-.+.. -...++.|.+....+.+ +.+.+.+.-||.|||.+ ++|++..++.++.
T Consensus 4 ~w~p~~~P~wLl~E~e~--~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~---------- 70 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES--NILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGS---------- 70 (229)
T ss_pred CCCchhChHHHHHHHHc--CceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCC----------
Confidence 46666778888766652 23689999999987775 57899999999999996 8899988886643
Q ss_pred cceEEEEcCcHHHHHHHHHHHHHh-hccCCeEEEEE--ECCcChH----HHHH----HHhcCCCEEEeChHHHHHHHHcc
Q 007280 223 YPLALILAPTRELSSQIHVEAKKF-SYQTGVKVVVA--YGGAPIN----QQLR----ELERGVDILVATPGRLVDLLERA 291 (609)
Q Consensus 223 ~~~~Lil~Ptr~La~Qi~~~~~~~-~~~~~i~~~~~--~gg~~~~----~~~~----~l~~~~~IlV~Tpg~L~~~l~~~ 291 (609)
..+.+++|. .|..|....++.- ..-.+-++..+ .-..... ..+. ...+.-.|+++||+.++.+....
T Consensus 71 -~LvrviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~ 148 (229)
T PF12340_consen 71 -RLVRVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKG 148 (229)
T ss_pred -cEEEEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHH
Confidence 237778885 6888887776553 22222222222 1222211 1122 22234579999999886543211
Q ss_pred -------c-----------ccccceEEEEeccchhhhh
Q 007280 292 -------R-----------VSLQMIRYLALDEADRMLD 311 (609)
Q Consensus 292 -------~-----------~~l~~i~~lVlDEah~~l~ 311 (609)
. ..+....-=|+||+|.++.
T Consensus 149 le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 149 LERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 1 0122334468899998765
No 183
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.05 E-value=4.4e-06 Score=79.73 Aligned_cols=145 Identities=14% Similarity=0.160 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
...|+-|+.++..+++..-+++.++.|||||+.++..+++.+...... +++|+-|+.+.-..+ -
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~-----------kiii~Rp~v~~~~~l-----G 66 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYD-----------KIIITRPPVEAGEDL-----G 66 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S-----------EEEEEE-S--TT---------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCc-----------EEEEEecCCCCcccc-----c
Confidence 356889999999999777889999999999999888888777663322 278887876532211 0
Q ss_pred hhccC-CeEEEEE-------ECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHH
Q 007280 246 FSYQT-GVKVVVA-------YGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQ 317 (609)
Q Consensus 246 ~~~~~-~i~~~~~-------~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~ 317 (609)
|.... .-+...+ ....-.......+.....|-+..+..+. + .++.+ .+||+|||+.+. ..+
T Consensus 67 flpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iR-----G-rt~~~-~~iIvDEaQN~t----~~~ 135 (205)
T PF02562_consen 67 FLPGDLEEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIR-----G-RTFDN-AFIIVDEAQNLT----PEE 135 (205)
T ss_dssp SS---------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGT-----T---B-S-EEEEE-SGGG------HHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhc-----C-ccccc-eEEEEecccCCC----HHH
Confidence 10000 0000000 0000001111222223344444432221 1 12332 799999999864 468
Q ss_pred HHHHHHHcCCCCCCCceEEEEEee
Q 007280 318 IRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 318 i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
++.++..+ ....+++++--.
T Consensus 136 ~k~ilTR~----g~~skii~~GD~ 155 (205)
T PF02562_consen 136 LKMILTRI----GEGSKIIITGDP 155 (205)
T ss_dssp HHHHHTTB-----TT-EEEEEE--
T ss_pred HHHHHccc----CCCcEEEEecCc
Confidence 88888887 444566666444
No 184
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.95 E-value=0.00056 Score=77.19 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHhhHhCC-CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~-~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
..+++.|++||..++.. ..++|.+|+|+|||.+ +..++..+.+.+ ..+||++||..-+.++.+.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-~~~ii~~~~~~g------------~~VLv~a~sn~Avd~l~e~l~ 222 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT-LVELIRQLVKRG------------LRVLVTAPSNIAVDNLLERLA 222 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH-HHHHHHHHHHcC------------CCEEEEcCcHHHHHHHHHHHH
Confidence 35789999999988876 5678999999999985 344455554432 239999999999999988776
Q ss_pred H
Q 007280 245 K 245 (609)
Q Consensus 245 ~ 245 (609)
+
T Consensus 223 ~ 223 (637)
T TIGR00376 223 L 223 (637)
T ss_pred h
Confidence 6
No 185
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.89 E-value=9.5e-05 Score=82.17 Aligned_cols=142 Identities=22% Similarity=0.269 Sum_probs=89.8
Q ss_pred CCCHHHHHHHhhHh----CCCCceeeccCCCCchHHhHHHHHHHHHhhhccc--------C-------C-----------
Q 007280 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQ--------R-------P----------- 216 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~----~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~--------~-------~----------- 216 (609)
+|+|.|..-+..++ ...+.++..|||+|||++.|-..|.+....+... + +
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 68999987776544 5678999999999999976555554433221000 0 0
Q ss_pred ---CCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECC--------------cC-----------------
Q 007280 217 ---RGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG--------------AP----------------- 262 (609)
Q Consensus 217 ---~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg--------------~~----------------- 262 (609)
....+.-|.+.+-+-|-.-..|+..|+++..+.. +.+++-.- ..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~v--kmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRV--KMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCCC--ceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 0001234778888888888899999999876663 32222110 00
Q ss_pred -------------------hHH--------------HHHHHhcCCCEEEeChHHHHHHHHccc--ccccceEEEEeccch
Q 007280 263 -------------------INQ--------------QLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEAD 307 (609)
Q Consensus 263 -------------------~~~--------------~~~~l~~~~~IlV~Tpg~L~~~l~~~~--~~l~~i~~lVlDEah 307 (609)
+.+ .-+++...++|++|-+..|+|-.-+.. ++|++ ..|||||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAH 257 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAH 257 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccc
Confidence 000 112333357999999999998776643 55554 589999999
Q ss_pred hhhh
Q 007280 308 RMLD 311 (609)
Q Consensus 308 ~~l~ 311 (609)
.|-+
T Consensus 258 NiEd 261 (945)
T KOG1132|consen 258 NIED 261 (945)
T ss_pred cHHH
Confidence 8654
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.87 E-value=4.5e-05 Score=80.23 Aligned_cols=108 Identities=15% Similarity=0.172 Sum_probs=66.2
Q ss_pred CceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcCh
Q 007280 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~ 263 (609)
-+||.+..|||||+.++- ++..+.... .+..++++++...|...+.+.+.+-..
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~~~----------~~~~~~~l~~n~~l~~~l~~~l~~~~~--------------- 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQNSE----------EGKKVLYLCGNHPLRNKLREQLAKKYN--------------- 56 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhccc----------cCCceEEEEecchHHHHHHHHHhhhcc---------------
Confidence 478999999999996433 333331111 112389999999999988777766320
Q ss_pred HHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcC-------CHHHHHHHHHH
Q 007280 264 NQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-------FEPQIRKIVQQ 324 (609)
Q Consensus 264 ~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~g-------f~~~i~~i~~~ 324 (609)
.......+..+..++..+.........+++||+||||+|.+.. ...++..++..
T Consensus 57 -------~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 -------PKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -------cchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0001233444444444333222346778999999999998731 24566666665
No 187
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.78 E-value=0.00017 Score=80.38 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=85.8
Q ss_pred CCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhh
Q 007280 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (609)
Q Consensus 168 pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~ 247 (609)
..++|+.|+...+..+-++|.+++|+|||.+ +.-++..+.+.... ....+++++||..-|..+.+.+....
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~~~--------~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLADG--------ERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhcCC--------CCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 3589999999999999999999999999985 22344444332110 01348899999998888877665432
Q ss_pred ccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHc------ccccccceEEEEeccchhhhhcCCHHHHHHH
Q 007280 248 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER------ARVSLQMIRYLALDEADRMLDMGFEPQIRKI 321 (609)
Q Consensus 248 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~------~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i 321 (609)
....+. ... ......-..|-.+|+..... ...+.-.+++||+|||-+ .+ .+.+..+
T Consensus 224 ~~~~~~-----------~~~---~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSM-vd---~~lm~~l 285 (615)
T PRK10875 224 RQLPLT-----------DEQ---KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASM-VD---LPMMARL 285 (615)
T ss_pred hccccc-----------hhh---hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhc-cc---HHHHHHH
Confidence 222110 000 00111223444444432111 111233468999999984 44 4666777
Q ss_pred HHHcCCCCCCCceEEEEEee
Q 007280 322 VQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 322 ~~~l~~~~~~~~q~il~SAT 341 (609)
+..+ ++..++|++--.
T Consensus 286 l~al----~~~~rlIlvGD~ 301 (615)
T PRK10875 286 IDAL----PPHARVIFLGDR 301 (615)
T ss_pred HHhc----ccCCEEEEecch
Confidence 7777 556777777554
No 188
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.77 E-value=9.9e-05 Score=79.03 Aligned_cols=64 Identities=25% Similarity=0.413 Sum_probs=51.0
Q ss_pred CCCHHHHHHHhhHhCCCC-ceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d-~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~ 243 (609)
.+.+-|+.|+...++.++ .++.+|+|+|||.+. .-+++++++.+. ++||++||.+-+..|.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tl-vEiI~qlvk~~k------------~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTL-VEIISQLVKQKK------------RVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeH-HHHHHHHHHcCC------------eEEEEcCchHHHHHHHHHh
Confidence 467889999999998866 568999999999974 446666665542 2999999999999998853
No 189
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.75 E-value=0.00031 Score=81.92 Aligned_cols=124 Identities=17% Similarity=0.098 Sum_probs=73.7
Q ss_pred CCCHHHHHHHhhHhCCCC-ceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d-~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
.+++-|+++|..++.+++ +++.+..|+|||.+ +-.+ ..+++.. +..++.++||-.-|..+.+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~-~~~~e~~-----------G~~V~~~ApTGkAA~~L~e---- 408 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVA-REAWEAA-----------GYEVRGAALSGIAAENLEG---- 408 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHH-HHHHHHc-----------CCeEEEecCcHHHHHHHhh----
Confidence 689999999999888655 67999999999984 3333 3333321 1348999999766554422
Q ss_pred hhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHc
Q 007280 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (609)
Q Consensus 246 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l 325 (609)
.+++.. .|..+|+.-.......+...++||||||-++. ..++..++...
T Consensus 409 ---~tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a 457 (988)
T PRK13889 409 ---GSGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHA 457 (988)
T ss_pred ---ccCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhh
Confidence 122211 12222221112223345667899999999543 23555666544
Q ss_pred CCCCCCCceEEEEEee
Q 007280 326 DMPPPGMRQTMLFSAT 341 (609)
Q Consensus 326 ~~~~~~~~q~il~SAT 341 (609)
. +...++||+--+
T Consensus 458 ~---~~garvVLVGD~ 470 (988)
T PRK13889 458 A---DAGAKVVLVGDP 470 (988)
T ss_pred h---hCCCEEEEECCH
Confidence 2 234566776554
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.74 E-value=0.0003 Score=78.28 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=85.9
Q ss_pred CHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhc
Q 007280 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (609)
Q Consensus 169 t~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~ 248 (609)
.+.|+.|+..++.++-++|.++.|+|||.+ +..++..+.+..... ..+.+++++||-.-|..+.+.+.....
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~~-------~~~~I~l~APTGkAA~rL~e~~~~~~~ 218 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPKQ-------GKLRIALAAPTGKAAARLAESLRKAVK 218 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhcccc-------CCCcEEEECCcHHHHHHHHHHHHhhhc
Confidence 379999999999999999999999999985 333444443322110 013499999998888887766655322
Q ss_pred cCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHc------ccccccceEEEEeccchhhhhcCCHHHHHHHH
Q 007280 249 QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER------ARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (609)
Q Consensus 249 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~------~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~ 322 (609)
..... .. +.....+-..|-.+|+..... ...+...+++||||||-+ ++ .+.+..++
T Consensus 219 ~l~~~----------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSM-vd---~~l~~~ll 280 (586)
T TIGR01447 219 NLAAA----------EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASM-VD---LPLMAKLL 280 (586)
T ss_pred ccccc----------hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEccccc-CC---HHHHHHHH
Confidence 11110 00 000112234555555443211 111233578999999984 43 35677777
Q ss_pred HHcCCCCCCCceEEEEEee
Q 007280 323 QQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 323 ~~l~~~~~~~~q~il~SAT 341 (609)
..+ +...++|++--.
T Consensus 281 ~al----~~~~rlIlvGD~ 295 (586)
T TIGR01447 281 KAL----PPNTKLILLGDK 295 (586)
T ss_pred Hhc----CCCCEEEEECCh
Confidence 777 556677776544
No 191
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.64 E-value=0.00045 Score=79.10 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~ 240 (609)
..+++-|++|+..+..++-+++.+..|+|||.+. -.++..+...... ..+++++||-.-|..+.
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~----------~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGL----------LPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCC----------ceEEEEeCchHHHHHHH
Confidence 4789999999999998888999999999999842 2233333222100 12888999987776543
No 192
>PRK10536 hypothetical protein; Provisional
Probab=97.64 E-value=0.0016 Score=64.12 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHH
Q 007280 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE 234 (609)
Q Consensus 164 ~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 234 (609)
++...+..|...+..+.+..-+++.+++|+|||+.++..+++.++.... -+++|.-|+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~-----------~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDV-----------DRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCe-----------eEEEEeCCCCC
Confidence 4455688899999988888788899999999999766655555544321 12666667654
No 193
>PF13245 AAA_19: Part of AAA domain
Probab=97.46 E-value=0.00039 Score=55.46 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=38.3
Q ss_pred HHhhHhC-CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHH
Q 007280 175 AIPISIG-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (609)
Q Consensus 175 ~i~~i~~-~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~ 243 (609)
+|...+. +.-++|.++.|||||...+ .++..+....... +..+||++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~-~~i~~l~~~~~~~--------~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLA-ARIAELLAARADP--------GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHH-HHHHHHHHHhcCC--------CCeEEEECCCHHHHHHHHHHH
Confidence 3442333 4445669999999997533 3444454321100 123999999999999987776
No 194
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.35 E-value=0.00083 Score=59.53 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=12.0
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
++.+++.+++|+|||..
T Consensus 4 ~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTL 20 (131)
T ss_dssp ---EEEEE-TTSSHHHH
T ss_pred CcccEEEcCCCCCHHHH
Confidence 45688999999999984
No 195
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.28 E-value=0.0005 Score=67.63 Aligned_cols=86 Identities=26% Similarity=0.384 Sum_probs=67.9
Q ss_pred ccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCc-ChHHHHHHHhc-CCCEEEeChHHHHHHHHcccccccceE
Q 007280 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA-PINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIR 299 (609)
Q Consensus 222 ~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~-~~~~~~~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~ 299 (609)
..|.+||||..-.-|..+...++.|... ...+.-++.-. ...+|+..+.+ .++|.|+||+||..+++.+.+.++.+.
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 3488999999988899998888887311 23344444433 56777777775 689999999999999999999999999
Q ss_pred EEEeccchh
Q 007280 300 YLALDEADR 308 (609)
Q Consensus 300 ~lVlDEah~ 308 (609)
+||||--|+
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998764
No 196
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.23 E-value=0.0018 Score=69.42 Aligned_cols=73 Identities=23% Similarity=0.251 Sum_probs=42.3
Q ss_pred cCCCEEEeChHHHHHHHHccc---c---cccceEE-EEeccchhhhhcC---------CHHHHHHHHHHcCCCCCCCceE
Q 007280 272 RGVDILVATPGRLVDLLERAR---V---SLQMIRY-LALDEADRMLDMG---------FEPQIRKIVQQMDMPPPGMRQT 335 (609)
Q Consensus 272 ~~~~IlV~Tpg~L~~~l~~~~---~---~l~~i~~-lVlDEah~~l~~g---------f~~~i~~i~~~l~~~~~~~~q~ 335 (609)
.+..|+++|.+.|...+.+.+ + ++.+..+ ++-||||++-... -...+...+.... ...++--+
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~-~~nkd~~~ 158 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL-EQNKDNLL 158 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH-hcCCCcee
Confidence 457899999999987765432 2 3444444 4669999975321 1112222222211 11334457
Q ss_pred EEEEeeccHH
Q 007280 336 MLFSATFPKE 345 (609)
Q Consensus 336 il~SAT~~~~ 345 (609)
+.||||+|++
T Consensus 159 lef~at~~k~ 168 (812)
T COG3421 159 LEFSATIPKE 168 (812)
T ss_pred ehhhhcCCcc
Confidence 8899999854
No 197
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0054 Score=64.23 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=65.3
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCc
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~ 261 (609)
+..+++++|||+|||+....-+...+...+.. ..++|.+.+ .-.--.+.++.|+...++.+..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~----------~V~lit~D~--~R~ga~EqL~~~a~~~gv~~~~~---- 200 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGAS----------KVALLTTDS--YRIGGHEQLRIFGKILGVPVHAV---- 200 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC----------eEEEEeccc--ccccHHHHHHHHHHHcCCceEec----
Confidence 55688999999999995433222112121110 113333333 21111234555554445544433
Q ss_pred ChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 262 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 262 ~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
-+++.|...+. .+.+.++|+||++-+.- +...+...+..+.........++.+|||
T Consensus 201 -----------------~~~~~l~~~l~----~l~~~DlVLIDTaG~~~---~d~~l~e~La~L~~~~~~~~~lLVLsAt 256 (374)
T PRK14722 201 -----------------KDGGDLQLALA----ELRNKHMVLIDTIGMSQ---RDRTVSDQIAMLHGADTPVQRLLLLNAT 256 (374)
T ss_pred -----------------CCcccHHHHHH----HhcCCCEEEEcCCCCCc---ccHHHHHHHHHHhccCCCCeEEEEecCc
Confidence 23333333332 24556889999997532 1223333333332222334557889999
Q ss_pred ccH-HHHHHHHHhh
Q 007280 342 FPK-EIQRLASDFL 354 (609)
Q Consensus 342 ~~~-~~~~l~~~~l 354 (609)
... .+.+.+..|.
T Consensus 257 s~~~~l~evi~~f~ 270 (374)
T PRK14722 257 SHGDTLNEVVQAYR 270 (374)
T ss_pred cChHHHHHHHHHHH
Confidence 744 3445555553
No 198
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.12 E-value=0.0022 Score=72.32 Aligned_cols=136 Identities=18% Similarity=0.218 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCC-ceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEE
Q 007280 151 DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALIL 229 (609)
Q Consensus 151 ~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d-~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil 229 (609)
.+.+.+... -+..++..|++|+-.++.-+| .||.+=+|+|||..... ++.-|...+ ..+|+.
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~~g------------kkVLLt 719 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVALG------------KKVLLT 719 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHHcC------------CeEEEE
Confidence 344444443 334789999999988886665 77889999999986443 333333322 128999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHH-----------------HHHhcCCCEEEeChHHHHHHHHccc
Q 007280 230 APTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL-----------------RELERGVDILVATPGRLVDLLERAR 292 (609)
Q Consensus 230 ~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~-----------------~~l~~~~~IlV~Tpg~L~~~l~~~~ 292 (609)
+=|-.-+..|.-.++.+ ++...-+-....+.++. ...-..+.||.||---+.+.|.
T Consensus 720 syThsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf--- 792 (1100)
T KOG1805|consen 720 SYTHSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF--- 792 (1100)
T ss_pred ehhhHHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh---
Confidence 99988888886655554 33322111112222222 2233457888888443333332
Q ss_pred ccccceEEEEeccchhhhh
Q 007280 293 VSLQMIRYLALDEADRMLD 311 (609)
Q Consensus 293 ~~l~~i~~lVlDEah~~l~ 311 (609)
....++|.|+|||-.++.
T Consensus 793 -~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 793 -VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred -hccccCEEEEcccccccc
Confidence 345689999999998654
No 199
>PRK08181 transposase; Validated
Probab=97.11 E-value=0.0038 Score=62.65 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=21.5
Q ss_pred CHHHHHHHh----hHhCCCCceeeccCCCCchHH
Q 007280 169 TPVQRHAIP----ISIGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 169 t~iQ~~~i~----~i~~~~d~ii~a~TGsGKT~a 198 (609)
.+.|..++. .+..++++++++|+|+|||..
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHL 122 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHL 122 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHH
Confidence 344544442 344678899999999999974
No 200
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.09 E-value=0.0083 Score=70.77 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=73.7
Q ss_pred CCCCHHHHHHHhhHhC-CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIG-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~-~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
..+++-|+++|..+.. ++-++|.+.-|+|||.+ +-++.. +++.. +..++.++||-.-|..+.+.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~-~~e~~-----------G~~V~g~ApTgkAA~~L~e~-- 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAARE-AWEAA-----------GYRVVGGALAGKAAEGLEKE-- 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHH-HHHHc-----------CCeEEEEcCcHHHHHHHHHh--
Confidence 4689999999998764 55688999999999984 333333 33221 12389999996665554321
Q ss_pred HhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHH
Q 007280 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (609)
Q Consensus 245 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~ 324 (609)
+++... |-.+|+.........+..-++||||||-++ + ..++..++..
T Consensus 445 -----~Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv-~---~~~m~~Ll~~ 491 (1102)
T PRK13826 445 -----AGIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMV-A---SRQMALFVEA 491 (1102)
T ss_pred -----hCCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccC-C---HHHHHHHHHH
Confidence 233222 212221111112234566789999999954 3 3455566655
Q ss_pred cCCCCCCCceEEEEEee
Q 007280 325 MDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 325 l~~~~~~~~q~il~SAT 341 (609)
+. ....++||+--+
T Consensus 492 ~~---~~garvVLVGD~ 505 (1102)
T PRK13826 492 VT---RAGAKLVLVGDP 505 (1102)
T ss_pred HH---hcCCEEEEECCH
Confidence 52 234567776554
No 201
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.09 E-value=0.004 Score=63.36 Aligned_cols=146 Identities=16% Similarity=0.225 Sum_probs=85.8
Q ss_pred CCCCCCCHHHHHHHhhHhCCCC--ceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHH
Q 007280 163 CKYVKPTPVQRHAIPISIGGRD--LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (609)
Q Consensus 163 ~~~~~pt~iQ~~~i~~i~~~~d--~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~ 240 (609)
+|+..-+..|.-|+..++...- +.+.++-|||||+.++.+.+.+.+..+.-. ++||.=|+..+-..|=
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~----------KiiVtRp~vpvG~dIG 293 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYR----------KIIVTRPTVPVGEDIG 293 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhc----------eEEEecCCcCcccccC
Confidence 4676677789999999886432 568899999999988888888877664322 3788888866654430
Q ss_pred ----HHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccce----------EEEEeccc
Q 007280 241 ----VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMI----------RYLALDEA 306 (609)
Q Consensus 241 ----~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i----------~~lVlDEa 306 (609)
.+-.|+..+ .+ ++.+.+..+. +.-=++-+.|...+.+..+.+..+ .+||+|||
T Consensus 294 fLPG~eEeKm~PW--------mq--~i~DnLE~L~---~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEa 360 (436)
T COG1875 294 FLPGTEEEKMGPW--------MQ--AIFDNLEVLF---SPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEA 360 (436)
T ss_pred cCCCchhhhccch--------HH--HHHhHHHHHh---cccccchHHHHHHHhccceeeeeeeeecccccccceEEEehh
Confidence 000111000 00 0011111111 111123445555555544433222 57999999
Q ss_pred hhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEE
Q 007280 307 DRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (609)
Q Consensus 307 h~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~S 339 (609)
+.+- ..+++.|+..+. ...++|++.
T Consensus 361 QNLT----pheikTiltR~G----~GsKIVl~g 385 (436)
T COG1875 361 QNLT----PHELKTILTRAG----EGSKIVLTG 385 (436)
T ss_pred hccC----HHHHHHHHHhcc----CCCEEEEcC
Confidence 9863 578999999883 344555553
No 202
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.07 E-value=2.9e-05 Score=85.92 Aligned_cols=65 Identities=26% Similarity=0.361 Sum_probs=56.2
Q ss_pred CCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhc---CCCcEEEEccccccC
Q 007280 402 GKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS---GKTPILVATDVAARG 467 (609)
Q Consensus 402 ~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~---g~~~ILVaT~v~~~G 467 (609)
....+++||..-....+.|.+++...+ ....|.|..+..+|+.++++|.. .+...|++|...+.|
T Consensus 629 ~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 629 SSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 347889999999999999999999888 88899999999999999999983 345688999876654
No 203
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.022 Score=60.18 Aligned_cols=132 Identities=11% Similarity=0.107 Sum_probs=68.6
Q ss_pred CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCc-HHHHHHHHHHHHHhhccCCeEEEEEECCc
Q 007280 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT-RELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt-r~La~Qi~~~~~~~~~~~~i~~~~~~gg~ 261 (609)
+.++++++||+|||++..--+ .++....... ....+||-+-| |.-+.++ ++.++...++.+.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA-~~~~~~~~~~-------g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~~~--- 240 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLA-AIYGINSDDK-------SLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKAIE--- 240 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHhhhccC-------CCeEEEEeccCccHHHHHH---HHHHhhcCCcceEeeC---
Confidence 457899999999998643222 2222111000 01224555544 3333322 5566555565543321
Q ss_pred ChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcC-CHHHHHHHHHHcCCCCCCCceEEEEEe
Q 007280 262 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (609)
Q Consensus 262 ~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~g-f~~~i~~i~~~l~~~~~~~~q~il~SA 340 (609)
++..+...+.. +..+++||+|++.++.... ....+..++..+. +....++.+||
T Consensus 241 ------------------~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~---~~~e~~LVlsa 295 (388)
T PRK12723 241 ------------------SFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACG---RDAEFHLAVSS 295 (388)
T ss_pred ------------------cHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC---CCCeEEEEEcC
Confidence 33334443332 4568999999999875211 1233444444332 23345788999
Q ss_pred ecc-HHHHHHHHHh
Q 007280 341 TFP-KEIQRLASDF 353 (609)
Q Consensus 341 T~~-~~~~~l~~~~ 353 (609)
|.. .++.+.+..|
T Consensus 296 t~~~~~~~~~~~~~ 309 (388)
T PRK12723 296 TTKTSDVKEIFHQF 309 (388)
T ss_pred CCCHHHHHHHHHHh
Confidence 975 4445455544
No 204
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.02 E-value=0.0023 Score=67.55 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=42.2
Q ss_pred CCCHHHHHHHhhH------hCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHH
Q 007280 167 KPTPVQRHAIPIS------IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (609)
Q Consensus 167 ~pt~iQ~~~i~~i------~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi 239 (609)
++++-|++++..+ .++..+++.++-|+|||. ++-.+...+... +..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~~~-----------~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLRSR-----------GKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhccc-----------cceEEEecchHHHHHhc
Confidence 3677899998877 567889999999999997 333333333221 12399999997766655
No 205
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.94 E-value=0.0057 Score=64.52 Aligned_cols=46 Identities=20% Similarity=0.115 Sum_probs=31.5
Q ss_pred CCCCCCHHHHHHHhhH----hCCCCceeeccCCCCchHHhHHHHHHHHHh
Q 007280 164 KYVKPTPVQRHAIPIS----IGGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (609)
Q Consensus 164 ~~~~pt~iQ~~~i~~i----~~~~d~ii~a~TGsGKT~a~llpil~~l~~ 209 (609)
.|...+|-|-+-+-.+ -.+.+.++..|+|+|||.+.|--++++.+.
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~ 62 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLH 62 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHh
Confidence 4566677776655433 246679999999999999755555554443
No 206
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.93 E-value=0.0048 Score=71.06 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=71.4
Q ss_pred CCCCHHHHHHHhhHhCC-CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~-~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
..+++-|++|+..++.+ +-++|.++.|+|||.+ +- .+..+++.. +..+++++||-.-+..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~-~i~~~~~~~-----------g~~V~~~ApTg~Aa~~L~~~-- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LK-AAREAWEAA-----------GYRVIGAALSGKAAEGLQAE-- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HH-HHHHHHHhC-----------CCeEEEEeCcHHHHHHHHhc--
Confidence 35899999999988864 5678999999999984 22 333333321 12389999997666554321
Q ss_pred HhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHH
Q 007280 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (609)
Q Consensus 245 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~ 324 (609)
+++... |-.+|+..+......+...++||||||-++.. .++..++..
T Consensus 416 -----~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~ 462 (744)
T TIGR02768 416 -----SGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKE 462 (744)
T ss_pred -----cCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHH
Confidence 222211 22222111122223356789999999985432 334455543
Q ss_pred cCCCCCCCceEEEEE
Q 007280 325 MDMPPPGMRQTMLFS 339 (609)
Q Consensus 325 l~~~~~~~~q~il~S 339 (609)
.. ....++|++-
T Consensus 463 ~~---~~~~kliLVG 474 (744)
T TIGR02768 463 AE---EAGAKVVLVG 474 (744)
T ss_pred HH---hcCCEEEEEC
Confidence 31 2234566654
No 207
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.93 E-value=0.0067 Score=54.65 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=51.2
Q ss_pred ccCHHHHHHHHHhhhcCCC-cEEEEccccccCCCCCC--ccEEEEcCCCCC-----------------------------
Q 007280 437 DRTQQERELALRSFKSGKT-PILVATDVAARGLDIPH--VAHVVNFDLPND----------------------------- 484 (609)
Q Consensus 437 ~~~~~~R~~~~~~F~~g~~-~ILVaT~v~~~GlDip~--v~~VI~~d~p~s----------------------------- 484 (609)
.....+..++++.|+...- .||++|.-+++|||+|+ ++.||...+|..
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLP 109 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHH
Confidence 3445567888999987543 79999977999999987 567888777631
Q ss_pred --HHHHHHHhhhcccCCCCceEEEEEc
Q 007280 485 --IDDYVHRIGRTGRAGKSGLATAFFN 509 (609)
Q Consensus 485 --~~~y~QriGRagR~g~~G~~~~f~~ 509 (609)
.....|.+||+-|..+.--++++++
T Consensus 110 ~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 110 DAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1223488899998765433444444
No 208
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.90 E-value=0.0092 Score=53.19 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=14.7
Q ss_pred CCCceeeccCCCCchH
Q 007280 182 GRDLMACAQTGSGKTA 197 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~ 197 (609)
++.+++.+++|+|||.
T Consensus 19 ~~~v~i~G~~G~GKT~ 34 (151)
T cd00009 19 PKNLLLYGPPGTGKTT 34 (151)
T ss_pred CCeEEEECCCCCCHHH
Confidence 6779999999999997
No 209
>PRK04296 thymidine kinase; Provisional
Probab=96.89 E-value=0.0026 Score=60.59 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=24.5
Q ss_pred eChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHc
Q 007280 279 ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (609)
Q Consensus 279 ~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l 325 (609)
..+..+++.+.. .-..+++|||||+|.+- .+++..++..+
T Consensus 63 ~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l 102 (190)
T PRK04296 63 SSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVL 102 (190)
T ss_pred CChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHH
Confidence 444455555443 23467899999998632 34566666665
No 210
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.86 E-value=0.0018 Score=72.14 Aligned_cols=46 Identities=11% Similarity=0.045 Sum_probs=39.0
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhc
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQY 212 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~ 212 (609)
+-|.+-++.+..++++.+.++...|+|+||.+-.+.++..+.++..
T Consensus 406 k~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~ 451 (1282)
T KOG0921|consen 406 KSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERG 451 (1282)
T ss_pred chhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhH
Confidence 4577788889999999999999999999999888888888887543
No 211
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.84 E-value=0.0024 Score=65.62 Aligned_cols=123 Identities=21% Similarity=0.134 Sum_probs=73.4
Q ss_pred CCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhh
Q 007280 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (609)
Q Consensus 168 pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~ 247 (609)
+|+-|.++|.. ....++|.|..|||||.+.+--++ +++....... ..+|||++|+..+..+.+.+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~-~ll~~~~~~~--------~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIA-YLLYEGGVPP--------ERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHH-HHHHTSSSTG--------GGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHH-HhhccccCCh--------HHheecccCHHHHHHHHHHHHHhc
Confidence 57889999987 667899999999999997554444 4444331111 239999999999999998888864
Q ss_pred ccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccc--cceEEEEeccch
Q 007280 248 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSL--QMIRYLALDEAD 307 (609)
Q Consensus 248 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l--~~i~~lVlDEah 307 (609)
....... ............-..+.|.|-..+...+.+..... -.-.+-++|+..
T Consensus 70 ~~~~~~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 70 EEEQQES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HHCCHCC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred Ccccccc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 3321100 00001111222345799999888866443322111 112456777776
No 212
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.80 E-value=0.0037 Score=72.38 Aligned_cols=153 Identities=18% Similarity=0.143 Sum_probs=88.5
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHhhhccc-----CCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEE
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQ-----RPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVV 256 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~-----~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~ 256 (609)
++++++...+|.|||.+-+.-.+..+-+..... ........-...|||||. ++..||++|+.+.+... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 567788899999999976554443311110000 000011111238999998 67799999999976654 67776
Q ss_pred EECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccc--------------cc----ccceEE--EEeccchhhhhcCCHH
Q 007280 257 AYGGAPINQQLRELERGVDILVATPGRLVDLLERAR--------------VS----LQMIRY--LALDEADRMLDMGFEP 316 (609)
Q Consensus 257 ~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~--------------~~----l~~i~~--lVlDEah~~l~~gf~~ 316 (609)
..|=..........--.+|||++|+..|..-+.... .. |-.+.+ |+||||+. +.. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQM-ves-ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQM-VES-SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHh-hcc-hHH
Confidence 655322111111112248999999999976654321 11 111121 89999995 443 345
Q ss_pred HHHHHHHHcCCCCCCCceEEEEEeecc
Q 007280 317 QIRKIVQQMDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 317 ~i~~i~~~l~~~~~~~~q~il~SAT~~ 343 (609)
+..+++..+. ....=+.|.|+-
T Consensus 530 ~~a~M~~rL~-----~in~W~VTGTPi 551 (1394)
T KOG0298|consen 530 AAAEMVRRLH-----AINRWCVTGTPI 551 (1394)
T ss_pred HHHHHHHHhh-----hhceeeecCCch
Confidence 5666666551 234678889853
No 213
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.79 E-value=0.007 Score=54.65 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=49.4
Q ss_pred HHHHHHHHhhhcCCC---cEEEEccc--cccCCCCCC--ccEEEEcCCCC----CH------------------------
Q 007280 441 QERELALRSFKSGKT---PILVATDV--AARGLDIPH--VAHVVNFDLPN----DI------------------------ 485 (609)
Q Consensus 441 ~~R~~~~~~F~~g~~---~ILVaT~v--~~~GlDip~--v~~VI~~d~p~----s~------------------------ 485 (609)
.+..++++.|++... .||+++.- +++|||+|+ ++.||...+|. ++
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 344678888887543 69998876 899999988 67899888774 11
Q ss_pred ---HHHHHHhhhcccCCCCceEEEEEcC
Q 007280 486 ---DDYVHRIGRTGRAGKSGLATAFFNE 510 (609)
Q Consensus 486 ---~~y~QriGRagR~g~~G~~~~f~~~ 510 (609)
....|.+||+-|..+.--++++++.
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEec
Confidence 1234889999998665445555543
No 214
>PRK14974 cell division protein FtsY; Provisional
Probab=96.78 E-value=0.019 Score=59.49 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=39.4
Q ss_pred cceEEEEeccchhhh-hcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhc
Q 007280 296 QMIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA 355 (609)
Q Consensus 296 ~~i~~lVlDEah~~l-~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~ 355 (609)
..+++|++|.+.++- +..+..++..+...+ .++..++.++||...+..+.+..|..
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~----~pd~~iLVl~a~~g~d~~~~a~~f~~ 277 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVT----KPDLVIFVGDALAGNDAVEQAREFNE 277 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhh----CCceEEEeeccccchhHHHHHHHHHh
Confidence 346799999999875 334556777776655 34566888899987776666666643
No 215
>PRK06526 transposase; Provisional
Probab=96.76 E-value=0.0039 Score=62.19 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=19.2
Q ss_pred hhHhCCCCceeeccCCCCchHHhH
Q 007280 177 PISIGGRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 177 ~~i~~~~d~ii~a~TGsGKT~a~l 200 (609)
..+..+.++++++|+|+|||..+.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHH
Confidence 345567899999999999998543
No 216
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.74 E-value=0.039 Score=57.61 Aligned_cols=131 Identities=21% Similarity=0.315 Sum_probs=68.9
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCc
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~ 261 (609)
++.+++.+|||.|||+.-.--+....+..+. .-.+||..-|--... ++.++.|+...++.+.+++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~----------~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv~~-- 268 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK----------KKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVVYS-- 268 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC----------cceEEEEeccchhhH--HHHHHHHHHHhCCceEEecC--
Confidence 6778899999999998532212111211211 123677776644322 24466666666666555443
Q ss_pred ChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhh-hcCCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 007280 262 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (609)
Q Consensus 262 ~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l-~~gf~~~i~~i~~~l~~~~~~~~q~il~SA 340 (609)
|.-|.+.+. .+.++++|.+|=+-+-. |.....++..++... ....-.+.+||
T Consensus 269 -------------------~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~----~~i~~~Lvlsa 321 (407)
T COG1419 269 -------------------PKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVS----HSIEVYLVLSA 321 (407)
T ss_pred -------------------HHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhcc----ccceEEEEEec
Confidence 333433332 25556777777766422 111223334443333 33445688888
Q ss_pred ecc-HHHHHHHHHh
Q 007280 341 TFP-KEIQRLASDF 353 (609)
Q Consensus 341 T~~-~~~~~l~~~~ 353 (609)
|.. .++++....|
T Consensus 322 t~K~~dlkei~~~f 335 (407)
T COG1419 322 TTKYEDLKEIIKQF 335 (407)
T ss_pred CcchHHHHHHHHHh
Confidence 864 3455555544
No 217
>PRK06921 hypothetical protein; Provisional
Probab=96.73 E-value=0.017 Score=57.99 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=19.2
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHh
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMR 209 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~ 209 (609)
+..+++.+++|+|||.. +..+...+.+
T Consensus 117 ~~~l~l~G~~G~GKThL-a~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHL-LTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHH-HHHHHHHHhh
Confidence 56799999999999973 3334444443
No 218
>PRK06893 DNA replication initiation factor; Validated
Probab=96.73 E-value=0.0045 Score=60.89 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=29.6
Q ss_pred ccceEEEEeccchhhhh-cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccH
Q 007280 295 LQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~-~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~ 344 (609)
+.++++|||||+|.+.. ..+...+..+++.+. ....+++++|++.++
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~---~~~~~illits~~~p 136 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIK---EQGKTLLLISADCSP 136 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHH---HcCCcEEEEeCCCCh
Confidence 34578999999998753 234445666666552 123456777777643
No 219
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.70 E-value=0.0042 Score=68.67 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=33.2
Q ss_pred ccceEEEEeccchhhhhcC-CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHH
Q 007280 295 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRL 349 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~g-f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l 349 (609)
+.++++|||||+|.+.... ....+..+++.+. ....++|+.|-..|.++..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~---e~gk~IIITSd~~P~eL~~l 427 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLH---NANKQIVLSSDRPPKQLVTL 427 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHH---hcCCCEEEecCCChHhhhhc
Confidence 4457899999999875432 3455667777663 22456777666666665433
No 220
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.69 E-value=0.006 Score=60.89 Aligned_cols=80 Identities=16% Similarity=0.362 Sum_probs=59.2
Q ss_pred HHHHhhhcCCCcEEEEccccccCCCCCC--------ccEEEEcCCCCCHHHHHHHhhhcccCCCCc-eEEEEEcCC---C
Q 007280 445 LALRSFKSGKTPILVATDVAARGLDIPH--------VAHVVNFDLPNDIDDYVHRIGRTGRAGKSG-LATAFFNEN---N 512 (609)
Q Consensus 445 ~~~~~F~~g~~~ILVaT~v~~~GlDip~--------v~~VI~~d~p~s~~~y~QriGRagR~g~~G-~~~~f~~~~---~ 512 (609)
...+.|.+|+..|+|.++.+++||.+.. -++-|.+.+||+.+..+|..||+.|.+|.. -.+.++..+ +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4467899999999999999999999864 245678899999999999999999999843 334444322 3
Q ss_pred hhhHHHHHHHHH
Q 007280 513 MSLARPLTELMQ 524 (609)
Q Consensus 513 ~~~~~~l~~~l~ 524 (609)
..++..+.+-|+
T Consensus 132 ~Rfas~va~rL~ 143 (278)
T PF13871_consen 132 RRFASTVARRLE 143 (278)
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 221
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.69 E-value=0.052 Score=58.33 Aligned_cols=130 Identities=22% Similarity=0.262 Sum_probs=65.6
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHH-hhhcccCCCCCccccceEEEEcCc-HHHHHHHHHHHHHhhccCCeEEEEEEC
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIM-REQYVQRPRGSRTVYPLALILAPT-RELSSQIHVEAKKFSYQTGVKVVVAYG 259 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~-~~~~~~~~~~~~~~~~~~Lil~Pt-r~La~Qi~~~~~~~~~~~~i~~~~~~g 259 (609)
++.+++.+|||+|||..... +...+. .... ...+||-+-+ |.-+ .+.++.++...++.+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~k-LA~~~~~~~~g----------~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~~--- 283 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAK-LAARYALLYGK----------KKVALITLDTYRIGA---VEQLKTYAKIMGIPVEV--- 283 (424)
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHHHHhcCC----------CeEEEEECCccHHHH---HHHHHHHHHHhCCceEc---
Confidence 45678999999999985432 222222 1111 0124444444 2212 13344444433443322
Q ss_pred CcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhh-cCCHHHHHHHHHHcCCCCCCCceEEEE
Q 007280 260 GAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (609)
Q Consensus 260 g~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~-~gf~~~i~~i~~~l~~~~~~~~q~il~ 338 (609)
+.++..|...+.. +..+++||||.+-+... ......+..++... ..+....+++
T Consensus 284 ------------------~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~---~~~~~~~LVl 338 (424)
T PRK05703 284 ------------------VYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFS---GEPIDVYLVL 338 (424)
T ss_pred ------------------cCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhcc---CCCCeEEEEE
Confidence 2344444444442 34579999999865321 11223444554421 1233557889
Q ss_pred Eeecc-HHHHHHHHHh
Q 007280 339 SATFP-KEIQRLASDF 353 (609)
Q Consensus 339 SAT~~-~~~~~l~~~~ 353 (609)
|||.. ..+.+....|
T Consensus 339 ~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 339 SATTKYEDLKDIYKHF 354 (424)
T ss_pred ECCCCHHHHHHHHHHh
Confidence 99875 4555555554
No 222
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.69 E-value=0.015 Score=67.25 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=24.3
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEE
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~S 339 (609)
...++++||||+|+|.... ...|++.|..+ +....+|+.+
T Consensus 118 ~~~~KV~IIDEad~lt~~a----~NaLLK~LEEp-P~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQG----FNALLKIVEEP-PEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHHH----HHHHHHHHhCC-CCCeEEEEEe
Confidence 3568899999999987533 34444555443 3444444443
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.67 E-value=0.017 Score=57.19 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=29.8
Q ss_pred ccceEEEEeccchhhhhcCCHH-HHHHHHHHcCCCCCCCceEEEEEeeccHHHH
Q 007280 295 LQMIRYLALDEADRMLDMGFEP-QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~-~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~ 347 (609)
+..+++|||||++......+.. .+..|+.... .....+|+.|---+.++.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry---~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRS---SSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHH---hCCCCEEEeCCCCHHHHH
Confidence 4568899999999765444444 3444555431 223457776665555443
No 224
>PRK08116 hypothetical protein; Validated
Probab=96.63 E-value=0.038 Score=55.68 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=28.7
Q ss_pred ccceEEEEeccchh--hhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHH
Q 007280 295 LQMIRYLALDEADR--MLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (609)
Q Consensus 295 l~~i~~lVlDEah~--~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~ 348 (609)
+...++|||||++. ..++. ...+..|+.... .....+|+.|-..+.++..
T Consensus 176 l~~~dlLviDDlg~e~~t~~~-~~~l~~iin~r~---~~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEWA-REKVYNIIDSRY---RKGLPTIVTTNLSLEELKN 227 (268)
T ss_pred hcCCCEEEEecccCCCCCHHH-HHHHHHHHHHHH---HCCCCEEEECCCCHHHHHH
Confidence 45578999999963 32322 344555655431 2234577777666665543
No 225
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.62 E-value=1.6 Score=49.48 Aligned_cols=68 Identities=21% Similarity=0.335 Sum_probs=52.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH---hc-CCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
+||.|+|+.-+.++++.+.+ .++.+..++|..+..+....+ .. ..+||||| +.+.++ +++..+++|
T Consensus 248 ~IVF~~tk~~a~~l~~~L~~----~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~arG-IDip~V~~V 317 (629)
T PRK11634 248 AIIFVRTKNATLEVAEALER----NGYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVAARG-LDVERISLV 317 (629)
T ss_pred EEEEeccHHHHHHHHHHHHh----CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chHhcC-CCcccCCEE
Confidence 89999999999998887776 367888999988766554433 22 57999999 555554 568888888
Q ss_pred Ee
Q 007280 302 AL 303 (609)
Q Consensus 302 Vl 303 (609)
|.
T Consensus 318 I~ 319 (629)
T PRK11634 318 VN 319 (629)
T ss_pred EE
Confidence 75
No 226
>PRK05642 DNA replication initiation factor; Validated
Probab=96.61 E-value=0.0062 Score=60.09 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=27.8
Q ss_pred ccceEEEEeccchhhhh-cCCHHHHHHHHHHcCCCCCCCceEEEEEeecc
Q 007280 295 LQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~-~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~ 343 (609)
+..+++||||++|.+.. ..+...+..+++.+. ...+ .+++++|.+
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~---~~g~-~ilits~~~ 140 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLR---DSGR-RLLLAASKS 140 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHH---hcCC-EEEEeCCCC
Confidence 34567899999997643 234566777877762 2234 456666543
No 227
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.54 E-value=0.003 Score=75.96 Aligned_cols=94 Identities=28% Similarity=0.365 Sum_probs=77.0
Q ss_pred ceEEEEecchhhHHHHHHHHHhCC-CCcEEecCcc-----------CHHHHHHHHHhhhcCCCcEEEEccccccCCCCCC
Q 007280 405 ALTLVFVETKKGADALEHWLYMNG-FPATTIHGDR-----------TQQERELALRSFKSGKTPILVATDVAARGLDIPH 472 (609)
Q Consensus 405 ~k~lVF~~t~~~~~~l~~~L~~~~-~~~~~ihg~~-----------~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~ 472 (609)
-..|+|++....+..+.++++... +.+..+.|.+ .+..+++++..|....+++|++|.++.+|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 346999999999999888887652 2222333332 1334788999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHHHHHHHhhhcccC
Q 007280 473 VAHVVNFDLPNDIDDYVHRIGRTGRA 498 (609)
Q Consensus 473 v~~VI~~d~p~s~~~y~QriGRagR~ 498 (609)
++.|+.++.|.....|+|..||+-+.
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccc
Confidence 99999999999999999999999554
No 228
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.49 E-value=0.029 Score=56.51 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=37.4
Q ss_pred CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHH
Q 007280 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~ 243 (609)
.+++++++|+.|||. |+.++........ .......|.++|-+|...-...++..+
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~hp~~~-d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLHPPQS-DEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHCCCCC-CCCCccccEEEEecCCCCChHHHHHHH
Confidence 579999999999998 6677765543322 222334588899998776655555444
No 229
>PRK08727 hypothetical protein; Validated
Probab=96.49 E-value=0.0092 Score=58.85 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=27.2
Q ss_pred ccceEEEEeccchhhhhcC-CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHH
Q 007280 295 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~g-f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~ 346 (609)
+.++++|||||+|.+.... ....+..+++.+. ....++|+.|-..|.+.
T Consensus 91 l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQREDEVALFDFHNRAR---AAGITLLYTARQMPDGL 140 (233)
T ss_pred HhcCCEEEEeCcccccCChHHHHHHHHHHHHHH---HcCCeEEEECCCChhhh
Confidence 3455789999999876332 2334555555542 12234555555555554
No 230
>PRK12377 putative replication protein; Provisional
Probab=96.45 E-value=0.021 Score=56.56 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=28.3
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
...+++.+++|+|||.. +.++...+.+... .++..+..+|..++..
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~~g~-------------~v~~i~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLAKGR-------------SVIVVTVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHcCC-------------CeEEEEHHHHHHHHHH
Confidence 35799999999999974 3334444543321 2344455677766543
No 231
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.44 E-value=0.12 Score=65.75 Aligned_cols=136 Identities=13% Similarity=0.174 Sum_probs=78.4
Q ss_pred CCCHHHHHHHhhHhCC--CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~--~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
.+++-|++++..++.. +-.+|.+..|+|||.+ +-.+..+.+.. +-.+++++||-.-+..+.+...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~~-----------G~~V~~lAPTgrAA~~L~e~~g 495 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASEQ-----------GYEIQIITAGSLSAQELRQKIP 495 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHHHhc
Confidence 5788999999988865 5578999999999984 22333333322 1239999999877666554322
Q ss_pred HhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHH
Q 007280 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (609)
Q Consensus 245 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~ 324 (609)
. ... .+...+..+.. ..-..|...|+ .....+..-++||||||-++. ..++..++..
T Consensus 496 ~-------~A~------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~ 552 (1960)
T TIGR02760 496 R-------LAS------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDK 552 (1960)
T ss_pred c-------hhh------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHH
Confidence 1 110 01111111111 11122333333 122335567899999999543 3556666665
Q ss_pred cCCCCCCCceEEEEEee
Q 007280 325 MDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 325 l~~~~~~~~q~il~SAT 341 (609)
.. ....++||+--+
T Consensus 553 a~---~~garvVlvGD~ 566 (1960)
T TIGR02760 553 AE---QHNSKLILLNDS 566 (1960)
T ss_pred Hh---hcCCEEEEEcCh
Confidence 42 345678887665
No 232
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.42 E-value=0.0073 Score=53.31 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.7
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
+..+++.+|+|+|||..
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 45689999999999984
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.34 E-value=0.035 Score=57.51 Aligned_cols=50 Identities=10% Similarity=0.116 Sum_probs=28.6
Q ss_pred ccceEEEEeccchhhhhcCC-HHHHHHHHHHcCCCCCCCceEEEEEeeccHHHH
Q 007280 295 LQMIRYLALDEADRMLDMGF-EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf-~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~ 347 (609)
+.++++||||+.+......| ...+..|++... .....+|+.|--.+.++.
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~---~~~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRL---LRQKKMIISTNLSLEELL 294 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHH---HCCCCEEEECCCCHHHHH
Confidence 45678999999986543222 345556666542 122446665555555553
No 234
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.34 E-value=0.022 Score=51.99 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=14.3
Q ss_pred ccceEEEEeccchhhhhc
Q 007280 295 LQMIRYLALDEADRMLDM 312 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~ 312 (609)
.....+|||||++.+++.
T Consensus 83 ~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 83 RGGDDLIILDELTRLVRA 100 (165)
T ss_pred CCCCEEEEEEcHHHHHHH
Confidence 356789999999987654
No 235
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.34 E-value=0.0098 Score=58.72 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=19.3
Q ss_pred eEEEEeccchhhhh-cCCHHHHHHHHHHc
Q 007280 298 IRYLALDEADRMLD-MGFEPQIRKIVQQM 325 (609)
Q Consensus 298 i~~lVlDEah~~l~-~gf~~~i~~i~~~l 325 (609)
+++|||||+|.+.. ......+..+++.+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~ 126 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRI 126 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHH
Confidence 47899999998753 23455666666665
No 236
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.26 E-value=0.021 Score=66.04 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=72.1
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
..++|-|++++.. ....++|.|..|||||.+ ++.-+.+|+......+ -.+|+|+-|+..|..+.+.+.+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~~v~p--------~~IL~lTFTnkAA~em~~Rl~~ 71 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRV-LTHRIAWLLSVENASP--------HSIMAVTFTNKAAAEMRHRIGA 71 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcCCCCH--------HHeEeeeccHHHHHHHHHHHHH
Confidence 4589999999864 346799999999999997 4445556665422211 1399999999999999998888
Q ss_pred hhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHH-Hccc--ccccceEEEEeccchh
Q 007280 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL-ERAR--VSLQMIRYLALDEADR 308 (609)
Q Consensus 246 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l-~~~~--~~l~~i~~lVlDEah~ 308 (609)
+... . ...+.|+|...|...+ .... ..+. -.+-|+|+.+.
T Consensus 72 ~~~~-----------~-----------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 72 LLGT-----------S-----------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred Hhcc-----------c-----------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 6321 0 0257788888775433 3211 1111 13457788764
No 237
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.23 E-value=0.022 Score=65.90 Aligned_cols=109 Identities=20% Similarity=0.195 Sum_probs=71.3
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
..++|-|++++... ...++|.|..|||||.+ ++.-+.+|+......+ -.+|+|+-|+..|..+.+.+.+
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~v-l~~Ria~Li~~~~v~p--------~~IL~lTFT~kAA~Em~~Rl~~ 76 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRV-LVHRIAWLMQVENASP--------YSIMAVTFTNKAAAEMRHRIEQ 76 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHH-HHHHHHHHHHcCCCCh--------hHeEeeeccHHHHHHHHHHHHH
Confidence 35899999998743 46799999999999997 4444556664322211 1299999999999999998888
Q ss_pred hhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccc---ccccceEEEEeccchh
Q 007280 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR---VSLQMIRYLALDEADR 308 (609)
Q Consensus 246 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~---~~l~~i~~lVlDEah~ 308 (609)
+... . ...+.|+|...|...+.+.. ..+. -.+-|+|+.+.
T Consensus 77 ~~~~-----------~-----------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 119 (721)
T PRK11773 77 LLGT-----------S-----------QGGMWVGTFHGLAHRLLRAHWQDANLP-QDFQILDSDDQ 119 (721)
T ss_pred Hhcc-----------C-----------CCCCEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 6321 0 02477888887754332221 1111 23457787764
No 238
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22 E-value=0.023 Score=64.04 Aligned_cols=52 Identities=27% Similarity=0.394 Sum_probs=29.1
Q ss_pred CccCHHHHHHHHHhhhcCCCcEE--EEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhc
Q 007280 436 GDRTQQERELALRSFKSGKTPIL--VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRT 495 (609)
Q Consensus 436 g~~~~~~R~~~~~~F~~g~~~IL--VaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRa 495 (609)
|..+...-.++++.+.+++..-+ +...+..+|+|+.. +..++..++|++=..
T Consensus 242 G~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~--------~l~dLl~~l~~~~~~ 295 (830)
T PRK07003 242 GALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFST--------ALQDLASLLHRIAWA 295 (830)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH--------HHHHHHHHHHHHHHH
Confidence 55666666677777777665532 33466667776521 122345555655544
No 239
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.21 E-value=0.024 Score=54.24 Aligned_cols=133 Identities=21% Similarity=0.208 Sum_probs=68.5
Q ss_pred CceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcC-cHHHHHHHHHHHHHhhccCCeEEEEEECCcC
Q 007280 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP-TRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~P-tr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~ 262 (609)
-+++++|||+|||.+..- +..++... . . ..+||-+- .|.=+. +.++.|+...++.+....-...
T Consensus 3 vi~lvGptGvGKTTt~aK-LAa~~~~~-~-~---------~v~lis~D~~R~ga~---eQL~~~a~~l~vp~~~~~~~~~ 67 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAK-LAARLKLK-G-K---------KVALISADTYRIGAV---EQLKTYAEILGVPFYVARTESD 67 (196)
T ss_dssp EEEEEESTTSSHHHHHHH-HHHHHHHT-T------------EEEEEESTSSTHHH---HHHHHHHHHHTEEEEESSTTSC
T ss_pred EEEEECCCCCchHhHHHH-HHHHHhhc-c-c---------cceeecCCCCCccHH---HHHHHHHHHhccccchhhcchh
Confidence 367899999999995332 22222222 1 1 11344443 333222 3355665555666554322221
Q ss_pred hHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhh-hcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 263 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 263 ~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l-~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
..+. +.+.++. ...+++++|++|-+-+.. +.....++..++..+ .+..-++.+|||
T Consensus 68 ~~~~-----------------~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~----~~~~~~LVlsa~ 124 (196)
T PF00448_consen 68 PAEI-----------------AREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL----NPDEVHLVLSAT 124 (196)
T ss_dssp HHHH-----------------HHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH----SSSEEEEEEEGG
T ss_pred hHHH-----------------HHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc----CCccceEEEecc
Confidence 1111 1122222 123457889999987643 222345666666666 445668999999
Q ss_pred ccHHHHHHHHHhh
Q 007280 342 FPKEIQRLASDFL 354 (609)
Q Consensus 342 ~~~~~~~l~~~~l 354 (609)
...+....+..|.
T Consensus 125 ~~~~~~~~~~~~~ 137 (196)
T PF00448_consen 125 MGQEDLEQALAFY 137 (196)
T ss_dssp GGGHHHHHHHHHH
T ss_pred cChHHHHHHHHHh
Confidence 8765544444443
No 240
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.15 E-value=0.041 Score=58.70 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=25.2
Q ss_pred CCHHHHHHHhhHhCCCCceeeccCCCCchHHh
Q 007280 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (609)
Q Consensus 168 pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~ 199 (609)
+-......+..+..++++++++++|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 34445566677778999999999999999854
No 241
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.07 E-value=0.015 Score=56.64 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=33.0
Q ss_pred ccceEEEEeccchhhhhcC-CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHH
Q 007280 295 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~g-f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~ 347 (609)
+..+++||||.+|.+.... ....+..+++.+. ....++|+.|...|.++.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~---~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLI---ESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHH---HTTSEEEEEESS-TTTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHH---hhCCeEEEEeCCCCcccc
Confidence 4568899999999876532 3456666666663 234577777777776543
No 242
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.02 E-value=0.02 Score=65.45 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=51.8
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.+++-|++++.. ....++|.|..|||||.+ ++.-+.+++......+ -.+|+|+-|+..|..+.+.+.++
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~v-L~~Ria~Li~~~~v~p--------~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGCGYQA--------RHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcCCCH--------HHeeeEechHHHHHHHHHHHHHH
Confidence 478999999875 346789999999999997 4444555654321111 12999999999999998888875
Q ss_pred h
Q 007280 247 S 247 (609)
Q Consensus 247 ~ 247 (609)
.
T Consensus 71 l 71 (672)
T PRK10919 71 L 71 (672)
T ss_pred h
Confidence 3
No 243
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.01 E-value=0.023 Score=56.74 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=32.8
Q ss_pred ccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeec---cHHHHHHHHHh
Q 007280 293 VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF---PKEIQRLASDF 353 (609)
Q Consensus 293 ~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~---~~~~~~l~~~~ 353 (609)
.....++.|||||||.|...- ...++++++.. +....+++...-+ +..+..-+..|
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~----s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTMEDF----SRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHhcc----ccceEEEEEcCChhhCChHHHhhHHHh
Confidence 346678999999999886432 24455555554 3444555555443 34444444444
No 244
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.00 E-value=0.022 Score=62.03 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=29.1
Q ss_pred cceEEEEeccchhhhhcC-CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHH
Q 007280 296 QMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRL 349 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~g-f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l 349 (609)
..+++|||||+|.+.... ....+..++..+. ....++|+.|.+.|.++..+
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~---~~~~~iiits~~~p~~l~~l 261 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALH---EAGKQIVLTSDRPPKELPGL 261 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHH---HCCCcEEEECCCCHHHHHHH
Confidence 357799999999875422 2344555555542 22345555555555554433
No 245
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.00 E-value=0.027 Score=60.86 Aligned_cols=56 Identities=7% Similarity=0.208 Sum_probs=34.4
Q ss_pred ccceEEEEeccchhhhhcC-CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHh
Q 007280 295 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF 353 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~g-f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~ 353 (609)
+.++++|||||+|.+.... ....+..+++.+.. ...++|+.|-+.|.++..+...+
T Consensus 200 ~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~---~~k~IIlts~~~p~~l~~l~~rL 256 (445)
T PRK12422 200 YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHT---EGKLIVISSTCAPQDLKAMEERL 256 (445)
T ss_pred cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHH---CCCcEEEecCCCHHHHhhhHHHH
Confidence 3457899999999876432 34556666665532 23566666666677665544433
No 246
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.93 E-value=0.025 Score=61.27 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=30.5
Q ss_pred ccceEEEEeccchhhhhc-CCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHH
Q 007280 295 LQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~-gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~ 346 (609)
+.++++|||||+|.+... ...+.+..+++.+. ....|+|+.|-..|..+
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~---~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI---ENDKQLFFSSDKSPELL 253 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHH---HcCCcEEEECCCCHHHH
Confidence 456789999999976532 23456667776663 22346666666556554
No 247
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.92 E-value=0.43 Score=52.11 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=15.4
Q ss_pred CCCCceeeccCCCCchHHh
Q 007280 181 GGRDLMACAQTGSGKTAAF 199 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~ 199 (609)
.++.++++++||+|||...
T Consensus 349 ~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566788999999999854
No 248
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.90 E-value=0.027 Score=58.44 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=29.3
Q ss_pred CCCHHHHHHHhhHhCCC----CceeeccCCCCchHHhHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISIGGR----DLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~----d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
.++|+|...+..+.... -+++++|.|.|||..+.. +...++
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHc
Confidence 45899999998777532 378999999999985443 333343
No 249
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.87 E-value=0.0021 Score=59.89 Aligned_cols=124 Identities=21% Similarity=0.231 Sum_probs=54.3
Q ss_pred eeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHH
Q 007280 186 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQ 265 (609)
Q Consensus 186 ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~ 265 (609)
++.|+-|-|||.+.-+.+ ..++.... ..++|.+|+.+-++.+++.+.+-....+++....... ..
T Consensus 1 VltA~RGRGKSa~lGl~~-a~l~~~~~-----------~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~ 65 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAA-AALIQKGK-----------IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQ 65 (177)
T ss_dssp -EEE-TTSSHHHHHHHCC-CCSSS----------------EEEE-SS--S-HHHHHCC----------------------
T ss_pred CccCCCCCCHHHHHHHHH-HHHHHhcC-----------ceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---cc
Confidence 578999999998654433 22322221 2399999999988887766655444333332000000 00
Q ss_pred HHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeecc
Q 007280 266 QLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 266 ~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~ 343 (609)
..........|-+..|+.+... ....++||+|||=.+- -+.+..++... ..++||.|..
T Consensus 66 ~~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~~--------~~vv~stTi~ 124 (177)
T PF05127_consen 66 IIKLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRRF--------PRVVFSTTIH 124 (177)
T ss_dssp -------CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS--------SEEEEEEEBS
T ss_pred ccccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhhC--------CEEEEEeecc
Confidence 0001112457778888766433 2235889999998642 35666665433 3678888863
No 250
>PHA02533 17 large terminase protein; Provisional
Probab=95.84 E-value=0.033 Score=61.55 Aligned_cols=150 Identities=14% Similarity=0.047 Sum_probs=83.5
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.|.|+|++.+..+..++-.++..+=..|||.+....++...+... +..+++++|++.-|..+++.++.+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~-----------~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK-----------DKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC-----------CCEEEEEeCCHHHHHHHHHHHHHH
Confidence 588999999987765666678888899999976654444443221 124999999999999998888765
Q ss_pred hccCC--eEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHH
Q 007280 247 SYQTG--VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (609)
Q Consensus 247 ~~~~~--i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~ 324 (609)
..... ++..+.... .....+.++..|.+.|... ....=.+++++||||+|.+-+ +.+.+..+...
T Consensus 128 ie~~P~l~~~~i~~~~----~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~ 194 (534)
T PHA02533 128 IELLPDFLQPGIVEWN----KGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPV 194 (534)
T ss_pred HHhCHHHhhcceeecC----ccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHH
Confidence 43221 111000000 0111123455554444220 111122467899999997643 33444444444
Q ss_pred cCCCCCCCceEEEEEeec
Q 007280 325 MDMPPPGMRQTMLFSATF 342 (609)
Q Consensus 325 l~~~~~~~~q~il~SAT~ 342 (609)
+..- ...+++.+|.+.
T Consensus 195 lasg--~~~r~iiiSTp~ 210 (534)
T PHA02533 195 ISSG--RSSKIIITSTPN 210 (534)
T ss_pred HHcC--CCceEEEEECCC
Confidence 4211 112455555553
No 251
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.83 E-value=0.077 Score=59.62 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.3
Q ss_pred ceeeccCCCCchHHhHH
Q 007280 185 LMACAQTGSGKTAAFCF 201 (609)
Q Consensus 185 ~ii~a~TGsGKT~a~ll 201 (609)
+|+.++.|+|||.++.+
T Consensus 41 yLf~Gp~GvGKTTlAr~ 57 (647)
T PRK07994 41 YLFSGTRGVGKTTIARL 57 (647)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999996544
No 252
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.81 E-value=0.052 Score=61.22 Aligned_cols=148 Identities=22% Similarity=0.230 Sum_probs=87.6
Q ss_pred HHHCCCCCCCHHHHHHHhhHhCC--CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHH
Q 007280 160 IRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (609)
Q Consensus 160 i~~~~~~~pt~iQ~~~i~~i~~~--~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 237 (609)
+.....+.+..-|.+.+..+++. +-+++.|.-|=|||.+.-|.+. .+..... ...++|.+|+.+-++
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~~----------~~~iiVTAP~~~nv~ 275 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLAG----------SVRIIVTAPTPANVQ 275 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhcC----------CceEEEeCCCHHHHH
Confidence 33334444444445555555643 3578899999999998776552 2222211 123999999999988
Q ss_pred HHHHHHHHhhccCCeEEEEEECCcChHHHHHHH-hcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHH
Q 007280 238 QIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL-ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEP 316 (609)
Q Consensus 238 Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l-~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~ 316 (609)
.+.+.+.+-....+++..+.....- .+... .+...|=+-+|.... ..-++||+|||=-+ -.+
T Consensus 276 ~Lf~fa~~~l~~lg~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plp 338 (758)
T COG1444 276 TLFEFAGKGLEFLGYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLP 338 (758)
T ss_pred HHHHHHHHhHHHhCCcccccccccc---ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChH
Confidence 8887776655555544333222110 00000 112235555655432 11579999999854 246
Q ss_pred HHHHHHHHcCCCCCCCceEEEEEeecc
Q 007280 317 QIRKIVQQMDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 317 ~i~~i~~~l~~~~~~~~q~il~SAT~~ 343 (609)
.+.+++... +.++||.|+.
T Consensus 339 lL~~l~~~~--------~rv~~sTTIh 357 (758)
T COG1444 339 LLHKLLRRF--------PRVLFSTTIH 357 (758)
T ss_pred HHHHHHhhc--------CceEEEeeec
Confidence 777777765 4689999974
No 253
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.81 E-value=0.084 Score=58.79 Aligned_cols=41 Identities=12% Similarity=0.308 Sum_probs=25.4
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SA 340 (609)
...++++||||+|+|.... ...+++.+..+ +.+..+||.|-
T Consensus 122 ~gr~KViIIDEah~Ls~~A----aNALLKTLEEP-P~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHA----FNAMLKTLEEP-PEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHH----HHHHHHhhccC-CCCceEEEEeC
Confidence 3467899999999986543 34455555443 34455555543
No 254
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.79 E-value=0.28 Score=52.40 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=62.7
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCc
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~ 261 (609)
+.-+.++++||+|||.....-+-..+...... ...+|.+.+.-.. ..+.+..|+...++.+..+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~----------~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~--- 255 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGAD----------KVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIK--- 255 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC----------eEEEEecCCcchh--HHHHHHHHHHHcCCceecCC---
Confidence 45578999999999995432121112111111 1256666663321 12224444444455443322
Q ss_pred ChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 262 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 262 ~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
++..+...+. .+...+++++|.+=+.- ....+..-+..+.........++.+|||
T Consensus 256 ------------------~~~dl~~al~----~l~~~d~VLIDTaGrsq---rd~~~~~~l~~l~~~~~~~~~~LVl~at 310 (420)
T PRK14721 256 ------------------DIADLQLMLH----ELRGKHMVLIDTVGMSQ---RDQMLAEQIAMLSQCGTQVKHLLLLNAT 310 (420)
T ss_pred ------------------CHHHHHHHHH----HhcCCCEEEecCCCCCc---chHHHHHHHHHHhccCCCceEEEEEcCC
Confidence 2222222222 25566788888863321 1122222222232222344567889999
Q ss_pred cc-HHHHHHHHHh
Q 007280 342 FP-KEIQRLASDF 353 (609)
Q Consensus 342 ~~-~~~~~l~~~~ 353 (609)
.. ..+.+....|
T Consensus 311 ~~~~~~~~~~~~f 323 (420)
T PRK14721 311 SSGDTLDEVISAY 323 (420)
T ss_pred CCHHHHHHHHHHh
Confidence 64 4455555544
No 255
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.74 E-value=0.023 Score=61.08 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=27.2
Q ss_pred ceEEEEeccchhhhhcC-CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHH
Q 007280 297 MIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (609)
Q Consensus 297 ~i~~lVlDEah~~l~~g-f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~ 348 (609)
.+++|||||+|.+.... ....+..++..+. ....++|+.|...|.++..
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~---~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALH---ENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHH---HCCCCEEEecCCCHHHHhh
Confidence 46799999999875432 2234555555442 1234555544444555443
No 256
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.73 E-value=0.058 Score=61.89 Aligned_cols=108 Identities=16% Similarity=0.109 Sum_probs=69.6
Q ss_pred CCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhh
Q 007280 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (609)
Q Consensus 168 pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~ 247 (609)
++|-|++++.. ...+++|.|..|||||.+ ++--+.+++......+ ..+|+|+.|+..|.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~~~~p--------~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRV-ITNKIAYLIQNCGYKA--------RNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcCCCH--------HHeEEEeccHHHHHHHHHHHHHHh
Confidence 68899998864 356899999999999996 4444455554321111 239999999999999988887753
Q ss_pred ccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccc---ccccceEEEEeccchh
Q 007280 248 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR---VSLQMIRYLALDEADR 308 (609)
Q Consensus 248 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~---~~l~~i~~lVlDEah~ 308 (609)
... ....|.|.|..+|...+-+.. ..+ .-.+-|+||.+.
T Consensus 71 ~~~---------------------~~~~v~v~TfHs~a~~il~~~~~~~g~-~~~~~il~~~~~ 112 (664)
T TIGR01074 71 GKG---------------------EARGLTISTFHTLGLDIIKREYNALGY-KSNFSLFDETDQ 112 (664)
T ss_pred Ccc---------------------ccCCeEEEeHHHHHHHHHHHHHHHhCC-CCCCEEeCHHHH
Confidence 210 013578888888755443221 111 122456787764
No 257
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.66 E-value=0.082 Score=57.26 Aligned_cols=52 Identities=10% Similarity=0.254 Sum_probs=30.6
Q ss_pred ceEEEEeccchhhhhcC-CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHH
Q 007280 297 MIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351 (609)
Q Consensus 297 ~i~~lVlDEah~~l~~g-f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~ 351 (609)
.+++|||||+|.+.+.. ....+..++..+.. ...++|+.|...|.++..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~---~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHD---SGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHH---cCCeEEEECCCCHHHHHHHHH
Confidence 46799999999876532 23455566655522 234555555555666554433
No 258
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.65 E-value=0.04 Score=62.74 Aligned_cols=71 Identities=23% Similarity=0.246 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
..+++-|++|+-. ...+++|.|..|||||.+ ++.-+.+++....... -.+|+|+.|+..|..+.+.+.+
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~v-l~~r~ayLl~~~~~~~--------~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSV-LVARAGWLLARGQAQP--------EQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHH-HHHHHHHHHHhCCCCH--------HHeEEEeccHHHHHHHHHHHHH
Confidence 4689999999853 335689999999999996 4445555554432211 2399999999999999888776
Q ss_pred hh
Q 007280 246 FS 247 (609)
Q Consensus 246 ~~ 247 (609)
..
T Consensus 264 ~l 265 (684)
T PRK11054 264 RL 265 (684)
T ss_pred hc
Confidence 54
No 259
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.61 E-value=0.045 Score=53.46 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.4
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
....+++.+++|+|||..
T Consensus 37 ~~~~lll~G~~G~GKT~l 54 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHL 54 (226)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 356799999999999984
No 260
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.59 E-value=0.3 Score=51.38 Aligned_cols=131 Identities=15% Similarity=0.269 Sum_probs=67.1
Q ss_pred CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCc-H-HHHHHHHHHHHHhhccCCeEEEEEECC
Q 007280 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT-R-ELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt-r-~La~Qi~~~~~~~~~~~~i~~~~~~gg 260 (609)
+.++++++||+|||..... +...+...+. ..++|-+-+ | ..+.|+ +.++...++.+.+
T Consensus 242 ~vI~LVGptGvGKTTTiaK-LA~~L~~~Gk-----------kVglI~aDt~RiaAvEQL----k~yae~lgipv~v---- 301 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK-MAWQFHGKKK-----------TVGFITTDHSRIGTVQQL----QDYVKTIGFEVIA---- 301 (436)
T ss_pred cEEEEECCCCCcHHHHHHH-HHHHHHHcCC-----------cEEEEecCCcchHHHHHH----HHHhhhcCCcEEe----
Confidence 4578999999999985433 2222322211 124455533 3 233443 3333333333222
Q ss_pred cChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 007280 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (609)
Q Consensus 261 ~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SA 340 (609)
+.+|..|.+.+..... ...+++|++|-+=+.... ...+..+...+.... +...++.+||
T Consensus 302 -----------------~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~-PdevlLVLsA 360 (436)
T PRK11889 302 -----------------VRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRA--SETVEEMIETMGQVE-PDYICLTLSA 360 (436)
T ss_pred -----------------cCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcC-CCeEEEEECC
Confidence 3356666655543211 124789999998765422 233444444433222 2334666888
Q ss_pred ec-cHHHHHHHHHhh
Q 007280 341 TF-PKEIQRLASDFL 354 (609)
Q Consensus 341 T~-~~~~~~l~~~~l 354 (609)
|. ..++...++.|-
T Consensus 361 Ttk~~d~~~i~~~F~ 375 (436)
T PRK11889 361 SMKSKDMIEIITNFK 375 (436)
T ss_pred ccChHHHHHHHHHhc
Confidence 75 456666666653
No 261
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.58 E-value=0.096 Score=52.56 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.7
Q ss_pred CCceeeccCCCCchHHh
Q 007280 183 RDLMACAQTGSGKTAAF 199 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~ 199 (609)
.++++.+|+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46899999999999854
No 262
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.54 E-value=0.097 Score=56.98 Aligned_cols=42 Identities=10% Similarity=0.233 Sum_probs=25.8
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~ 342 (609)
....+++||||+|.|.. .....+++.+..+ ++...+| |.+|-
T Consensus 114 ~~~~KVvIIDEah~Ls~----~A~NaLLK~LEeP-p~~v~fI-latte 155 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSN----SAFNALLKTLEEP-APHVKFI-LATTE 155 (491)
T ss_pred cCCceEEEEeChHhCCH----HHHHHHHHHHhCC-CCCeEEE-EEeCC
Confidence 45789999999998765 3445556666554 3333344 44453
No 263
>COG4371 Predicted membrane protein [Function unknown]
Probab=95.54 E-value=0.022 Score=54.35 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=5.6
Q ss_pred CCCCccccCCCC
Q 007280 555 RFGARDFRRDGS 566 (609)
Q Consensus 555 ~~g~~~~r~~g~ 566 (609)
++||+.+|..++
T Consensus 52 riGGgSfraps~ 63 (334)
T COG4371 52 RIGGGSFRAPSG 63 (334)
T ss_pred CccCCCCCCCCC
Confidence 444444554433
No 264
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.091 Score=54.13 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=36.3
Q ss_pred eEEEEeccchhhhhc-CC---HHHH----HHHHHHcCC---CCCCCceEEEEEee-ccHHHHHHHHHhhcCcEEEEe
Q 007280 298 IRYLALDEADRMLDM-GF---EPQI----RKIVQQMDM---PPPGMRQTMLFSAT-FPKEIQRLASDFLANYIFLAV 362 (609)
Q Consensus 298 i~~lVlDEah~~l~~-gf---~~~i----~~i~~~l~~---~~~~~~q~il~SAT-~~~~~~~l~~~~l~~~~~~~~ 362 (609)
-+.|.|||+|.|... |- .+.- ..++.+++- .....+.++.+-|| +|=++.+-+..-+.+.|++.+
T Consensus 305 PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPL 381 (491)
T KOG0738|consen 305 PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPL 381 (491)
T ss_pred CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeC
Confidence 468999999987632 10 1111 122223321 11222446667777 677777777776777666644
No 265
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.45 E-value=0.094 Score=56.03 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=14.4
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
.++++.+++|+|||..
T Consensus 56 ~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT 71 (394)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999984
No 266
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.44 E-value=0.12 Score=57.53 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=24.4
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEE
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~S 339 (609)
....+++||||+|+|... ....+++.+..+ +....+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~----A~NALLK~LEEp-p~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA----GFNALLKIVEEP-PEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH----HHHHHHHHHhcC-CCCeEEEEEe
Confidence 456889999999988654 344455555443 3344444444
No 267
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.41 E-value=0.075 Score=50.09 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=29.8
Q ss_pred ceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 185 LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 185 ~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
+++.+++|+|||...+--+.. ..+.+ ..+++++. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~-~~~~g------------~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA-GLARG------------EPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH-HHHCC------------CcEEEEEC-CCCHHHHHHHHHHc
Confidence 678999999999854332333 22221 11677754 46677777777665
No 268
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.40 E-value=0.058 Score=62.51 Aligned_cols=110 Identities=21% Similarity=0.218 Sum_probs=70.8
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
..++|-|++++.. ....++|.|..|||||.+.. --+.+++......+ -.+|+|+-|+..|..+.+.+.+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~-~ria~Li~~~~i~P--------~~IL~lTFT~kAA~em~~Rl~~ 71 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLT-HRIAHLIAEKNVAP--------WNILAITFTNKAAREMKERVEK 71 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHH-HHHHHHHHcCCCCH--------HHeeeeeccHHHHHHHHHHHHH
Confidence 3589999999974 34679999999999999743 34455554322111 1299999999999999888877
Q ss_pred hhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccc-ccc-cceEEEEeccchh
Q 007280 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-VSL-QMIRYLALDEADR 308 (609)
Q Consensus 246 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~-~~l-~~i~~lVlDEah~ 308 (609)
+... ....+.|+|...|...+.+.. ..+ -.-.+-|+|+.+.
T Consensus 72 ~~~~----------------------~~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~~ 114 (726)
T TIGR01073 72 LLGP----------------------VAEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTDQ 114 (726)
T ss_pred Hhcc----------------------ccCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHHH
Confidence 6321 013577888887754433221 101 0123457787764
No 269
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.39 E-value=0.048 Score=58.35 Aligned_cols=147 Identities=13% Similarity=0.235 Sum_probs=81.4
Q ss_pred CceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHH-HHHHHHHHHHHhhccCCeEEEEEECCcC
Q 007280 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE-LSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~-La~Qi~~~~~~~~~~~~i~~~~~~gg~~ 262 (609)
-.++++..|||||.+..+-++..++.... ...+||+-|+.. |...++.+++......++....-....+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~----------~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~ 72 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKK----------QQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSS 72 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCC----------CcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCc
Confidence 36789999999999988888877776411 123899989877 6666677776655444443221111110
Q ss_pred hHHHHHHHhc-CCCEEEeCh-HHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 007280 263 INQQLRELER-GVDILVATP-GRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (609)
Q Consensus 263 ~~~~~~~l~~-~~~IlV~Tp-g~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SA 340 (609)
. .+ .+.. +..|++..- +...++ .....+.++.+|||..+.. ..+..++..++.+ .....+++|.
T Consensus 73 ~--~i-~~~~~g~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~--~~~~~i~~t~ 138 (396)
T TIGR01547 73 M--EI-KILNTGKKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLTF----EDIKELIPRLRET--GGKKFIIFSS 138 (396)
T ss_pred c--EE-EecCCCeEEEeecccCChhHh-----hCcceeeeehhhhhhhcCH----HHHHHHHHHhhcc--CCccEEEEEc
Confidence 0 00 0111 334555442 111111 1234478999999998743 3556666555432 1222578888
Q ss_pred eccHHHHHHHHHhh
Q 007280 341 TFPKEIQRLASDFL 354 (609)
Q Consensus 341 T~~~~~~~l~~~~l 354 (609)
|++...--+.+.|+
T Consensus 139 NP~~~~~w~~~~f~ 152 (396)
T TIGR01547 139 NPESPLHWVKKRFI 152 (396)
T ss_pred CcCCCccHHHHHHH
Confidence 87543233333343
No 270
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.38 E-value=0.14 Score=44.85 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.3
Q ss_pred eEEEEeccchhhhhcC
Q 007280 298 IRYLALDEADRMLDMG 313 (609)
Q Consensus 298 i~~lVlDEah~~l~~g 313 (609)
..+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4799999999987654
No 271
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.17 Score=57.68 Aligned_cols=68 Identities=10% Similarity=0.113 Sum_probs=36.4
Q ss_pred ChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeecc-HHHHHHHHHhh
Q 007280 280 TPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP-KEIQRLASDFL 354 (609)
Q Consensus 280 Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~-~~~~~l~~~~l 354 (609)
+|..+.+.+.. +.+.++|+||=+=++-. ...+...+..+.....+...++.++||.. +.+.++++.|-
T Consensus 250 ~~~~l~~al~~----~~~~D~VLIDTAGRs~~---d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~ 318 (767)
T PRK14723 250 DAADLRFALAA----LGDKHLVLIDTVGMSQR---DRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYR 318 (767)
T ss_pred CHHHHHHHHHH----hcCCCEEEEeCCCCCcc---CHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHh
Confidence 56656555543 34567888888876431 12222222222222234456788888864 44555666653
No 272
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.34 E-value=0.077 Score=64.91 Aligned_cols=124 Identities=19% Similarity=0.164 Sum_probs=75.8
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
+.|+-|.++|. ..+.+++|.|.-|||||.+.+--++..+...... -.+|||+=|+..|..+.+.+.+-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~----------~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDI----------DRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCH----------hhEEEEeccHHHHHHHHHHHHHH
Confidence 36899999997 4688999999999999997555455544432111 12899999999999988877664
Q ss_pred hccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccc--eEEEEeccchh
Q 007280 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQM--IRYLALDEADR 308 (609)
Q Consensus 247 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~--i~~lVlDEah~ 308 (609)
....--. ......-.+++..-...-|+|-..|...+-+.....-. -.+=|+||...
T Consensus 69 l~~~~~~------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 69 LQKALQQ------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHHHhc------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 3211000 00111112222223467899998887555443221111 24556898875
No 273
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.33 E-value=0.037 Score=55.25 Aligned_cols=49 Identities=18% Similarity=0.357 Sum_probs=33.5
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~ 243 (609)
++.++++.+++|+|||..+ .+|...+++.+ .-++++++.+|+.++....
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~~~g-------------~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELLKAG-------------ISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHHcC-------------CeEEEEEHHHHHHHHHHHH
Confidence 5779999999999999843 33444444221 1567778888888875443
No 274
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.33 E-value=0.11 Score=53.67 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=22.7
Q ss_pred ceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 297 MIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 297 ~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
..++|||||+|.+........+..+++.. +...++|+ +++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~----~~~~~~Il-t~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAY----SKNCSFII-TAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhc----CCCceEEE-EcC
Confidence 45789999999873222334455555543 34444544 444
No 275
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.098 Score=58.38 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.7
Q ss_pred CceeeccCCCCchHHhHH
Q 007280 184 DLMACAQTGSGKTAAFCF 201 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~ll 201 (609)
-+|+++|.|+|||.++.+
T Consensus 39 AyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARI 56 (702)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999986543
No 276
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.30 E-value=0.96 Score=50.10 Aligned_cols=123 Identities=21% Similarity=0.325 Sum_probs=82.2
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCCCc-------EEecCccCHHHHHHHHHhhhc----CCCcEEEEc--cccccCCCC
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGFPA-------TTIHGDRTQQERELALRSFKS----GKTPILVAT--DVAARGLDI 470 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~~~-------~~ihg~~~~~~R~~~~~~F~~----g~~~ILVaT--~v~~~GlDi 470 (609)
++-+++|+++.+....+.+.+.+.|+-. +.+-..-+ -+++++.|.. |.-.||+|. .-+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 4558999999999999999887765421 12222111 4667777753 455688776 778999999
Q ss_pred CC--ccEEEEcCCCCC--------------------------------HHHHHHHhhhcccCCCCceEEEEEcCCChhhH
Q 007280 471 PH--VAHVVNFDLPND--------------------------------IDDYVHRIGRTGRAGKSGLATAFFNENNMSLA 516 (609)
Q Consensus 471 p~--v~~VI~~d~p~s--------------------------------~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~ 516 (609)
.+ ++.||..++|.. +....|-||||-|--+.=.++++++..-.
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~RY~--- 782 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKRYA--- 782 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhhhc---
Confidence 77 778888777641 11234999999998666667777765422
Q ss_pred HHHHHHHHHhcccchHHHHHHHh
Q 007280 517 RPLTELMQEANQEVPAWLNRYAS 539 (609)
Q Consensus 517 ~~l~~~l~~~~q~vp~~l~~~a~ 539 (609)
+.+. ..+|.|+.....
T Consensus 783 ~p~~-------RKLp~WI~~~v~ 798 (821)
T KOG1133|consen 783 RPLS-------RKLPKWIRKRVH 798 (821)
T ss_pred Cchh-------hhccHHHHhHhc
Confidence 1111 178888865543
No 277
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.30 E-value=0.19 Score=56.66 Aligned_cols=41 Identities=15% Similarity=0.387 Sum_probs=24.9
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
+...++|||||+|.|.. ..+..+++.+..++ . ..+++|.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~----~a~naLLk~LEepp-~-~tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLST----AAFNALLKTLEEPP-P-HAIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCH----HHHHHHHHHHhcCC-C-CeEEEEEeC
Confidence 45678999999998764 34455555554432 2 234444444
No 278
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.30 E-value=0.11 Score=55.87 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=31.3
Q ss_pred eEEEEeccchhhh-hcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhh
Q 007280 298 IRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354 (609)
Q Consensus 298 i~~lVlDEah~~l-~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l 354 (609)
.++||+|.+-++. +.....++..+...+ .++.-++.++||...+....++.|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~----~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAV----KPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHh----cccceeEEEeccccHHHHHHHHHHH
Confidence 3789999995532 212234455555444 3345577888887666555566554
No 279
>PF13173 AAA_14: AAA domain
Probab=95.29 E-value=0.15 Score=44.97 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=23.9
Q ss_pred ceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 297 MIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 297 ~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
.-.+|||||+|++-+ +...++.++... .+.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-----~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-----PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-----cCceEEEEccc
Confidence 456899999998743 556666666643 23455554443
No 280
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.29 E-value=0.098 Score=58.83 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.0
Q ss_pred CceeeccCCCCchHHhHH
Q 007280 184 DLMACAQTGSGKTAAFCF 201 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~ll 201 (609)
.+|++++.|+|||.++.+
T Consensus 40 a~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARI 57 (709)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 479999999999986543
No 281
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.28 E-value=0.14 Score=57.48 Aligned_cols=40 Identities=10% Similarity=0.257 Sum_probs=24.8
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEE
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~S 339 (609)
+...++|||||+|+|.. .....+++.+..+ +....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~----~a~naLLKtLEeP-p~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLST----AAFNALLKTLEEP-PPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCH----HHHHHHHHHHHhC-CCCeEEEEEe
Confidence 56688999999998864 3344555555443 3444455443
No 282
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.28 E-value=0.11 Score=58.10 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=26.4
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHH
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~ 345 (609)
....++|||||+|+|.. .....+++.+..+. . .-+++|.+|-+..
T Consensus 117 ~g~~kVIIIDEad~Lt~----~a~naLLk~LEEP~-~-~~ifILaTt~~~k 161 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTR----EAFNALLKTLEEPP-A-RVTFVLATTEPHK 161 (624)
T ss_pred cCCceEEEEEChHhCCH----HHHHHHHHHhhccC-C-CEEEEEecCChhh
Confidence 34578999999998753 34455555554432 2 2345555554443
No 283
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.26 E-value=0.12 Score=59.06 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=73.9
Q ss_pred ccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHh-CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEE
Q 007280 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYM-NGFPATTIHGDRTQQERELALRSFKSGKTPILV 459 (609)
Q Consensus 381 ~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~-~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILV 459 (609)
...|....+.++...... +.++||.++++..+..+.+.|.. .+..+..+||+++..+|.+++.+...|..+|+|
T Consensus 172 GSGKT~v~l~~i~~~l~~-----g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVV 246 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQ-----GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVI 246 (679)
T ss_pred CChHHHHHHHHHHHHHHc-----CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEE
Confidence 345666666565555432 55799999999999999999876 367889999999999999999999999999999
Q ss_pred EccccccCCCCCCccEEEEcC
Q 007280 460 ATDVAARGLDIPHVAHVVNFD 480 (609)
Q Consensus 460 aT~v~~~GlDip~v~~VI~~d 480 (609)
+|..+.. +.+.++.+||.-+
T Consensus 247 gTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 247 GARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred eccHHhc-ccccCCCEEEEEC
Confidence 9964332 5677888887544
No 284
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.25 E-value=0.051 Score=57.38 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=23.0
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEE
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~ 338 (609)
....+++||||+|.|... ....+++.+..+ +....+|+.
T Consensus 117 ~~~~kviIIDEa~~l~~~----a~naLLk~lEe~-~~~~~fIl~ 155 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRH----SFNALLKTLEEP-PQHIKFILA 155 (363)
T ss_pred cCCceEEEEEChhhcCHH----HHHHHHHHHhcC-CCCeEEEEE
Confidence 345789999999988643 233445555433 334444443
No 285
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.24 E-value=0.21 Score=54.29 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.1
Q ss_pred CCCceeeccCCCCchHHhH
Q 007280 182 GRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~l 200 (609)
++-++++++||+|||++..
T Consensus 256 g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CcEEEEECCCCccHHHHHH
Confidence 3457799999999999643
No 286
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.22 E-value=0.076 Score=58.48 Aligned_cols=39 Identities=13% Similarity=0.312 Sum_probs=23.4
Q ss_pred cceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEE
Q 007280 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~S 339 (609)
..++++||||+|+|.... ...+++.+..+ +....+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a----~naLLk~LEep-p~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS----FNALLKTLEEP-PSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH----HHHHHHHHhcc-CCCeEEEEEE
Confidence 467899999999886543 33444444433 3444444443
No 287
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.15 Score=52.46 Aligned_cols=44 Identities=25% Similarity=0.411 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHhhHh----CCC---CceeeccCCCCchHHhHHHHHHHHHh
Q 007280 165 YVKPTPVQRHAIPISI----GGR---DLMACAQTGSGKTAAFCFPIISGIMR 209 (609)
Q Consensus 165 ~~~pt~iQ~~~i~~i~----~~~---d~ii~a~TGsGKT~a~llpil~~l~~ 209 (609)
+..++|+|..++..+. +++ -+++.++.|+||+..+.. +...++-
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhC
Confidence 3568899999997665 333 388999999999985443 4444443
No 288
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.17 E-value=0.12 Score=56.85 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=73.0
Q ss_pred ccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC-CCCcEEecCccCHHHHHHHHHhhhcCCCcEEE
Q 007280 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-GFPATTIHGDRTQQERELALRSFKSGKTPILV 459 (609)
Q Consensus 381 ~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILV 459 (609)
...|....+.++...... ..++||.++++..+..+.+.|++. +..+..+|+.++..+|.+++.+..+|+.+|+|
T Consensus 7 GsGKT~v~l~~i~~~l~~-----g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVV 81 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLAL-----GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVI 81 (505)
T ss_pred CCCHHHHHHHHHHHHHHc-----CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEE
Confidence 345666666666555432 557999999999999999988764 67788999999999999999999999999999
Q ss_pred EccccccCCCCCCccEEEEcC
Q 007280 460 ATDVAARGLDIPHVAHVVNFD 480 (609)
Q Consensus 460 aT~v~~~GlDip~v~~VI~~d 480 (609)
+|..+-. +.+.++.+||.-+
T Consensus 82 GTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 82 GTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CChHHHc-CcccCCCEEEEEC
Confidence 9964432 4577888877433
No 289
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.17 E-value=0.68 Score=46.52 Aligned_cols=132 Identities=15% Similarity=0.227 Sum_probs=67.5
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcH--HHHHHHHHHHHHhhccCCeEEEEEEC
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR--ELSSQIHVEAKKFSYQTGVKVVVAYG 259 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr--~La~Qi~~~~~~~~~~~~i~~~~~~g 259 (609)
+..+++++++|+|||..+.+-+ ..+..... ...+|-+.+. ..+.|+...+.. .++.+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~-~~l~~~~~-----------~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~~--- 135 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMA-WQFHGKKK-----------TVGFITTDHSRIGTVQQLQDYVKT----IGFEVIA--- 135 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-HHHHHcCC-----------eEEEEecCCCCHHHHHHHHHHhhh----cCceEEe---
Confidence 3568899999999999554322 22221110 1244444332 455555433332 2333221
Q ss_pred CcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEE
Q 007280 260 GAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (609)
Q Consensus 260 g~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~S 339 (609)
..++..|.+.+..-. ....+++||+|-+=++... ...+..+...+... .+...++.+|
T Consensus 136 ------------------~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~--~~~l~el~~~~~~~-~~~~~~LVl~ 193 (270)
T PRK06731 136 ------------------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRA--SETVEEMIETMGQV-EPDYICLTLS 193 (270)
T ss_pred ------------------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCC--HHHHHHHHHHHhhh-CCCeEEEEEc
Confidence 124455544443211 1235789999999765311 23344343333222 2233467799
Q ss_pred eec-cHHHHHHHHHhh
Q 007280 340 ATF-PKEIQRLASDFL 354 (609)
Q Consensus 340 AT~-~~~~~~l~~~~l 354 (609)
||. ..++.+.++.|-
T Consensus 194 a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 194 ASMKSKDMIEIITNFK 209 (270)
T ss_pred CccCHHHHHHHHHHhC
Confidence 986 457777777663
No 290
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.16 E-value=0.058 Score=53.82 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=39.8
Q ss_pred CCCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhh
Q 007280 138 ENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQ 211 (609)
Q Consensus 138 ~~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~ 211 (609)
..+|..+.+|+++++++.+.+.+. ....=++|.+|||||||.. +..++.++.++.
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAE------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHh------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 345888899999999998876332 1122377899999999985 556777766543
No 291
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.10 E-value=0.07 Score=57.60 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.4
Q ss_pred ceeeccCCCCchHHhHH
Q 007280 185 LMACAQTGSGKTAAFCF 201 (609)
Q Consensus 185 ~ii~a~TGsGKT~a~ll 201 (609)
+|+++|.|+|||.++.+
T Consensus 43 ~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999986543
No 292
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.08 E-value=0.06 Score=54.29 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=17.1
Q ss_pred HhCCCCceeeccCCCCchHHhH
Q 007280 179 SIGGRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 179 i~~~~d~ii~a~TGsGKT~a~l 200 (609)
+..+.-+++.|++|+|||...+
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~ 48 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLR 48 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHH
Confidence 3456778999999999998433
No 293
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.04 E-value=0.17 Score=57.48 Aligned_cols=94 Identities=19% Similarity=0.155 Sum_probs=77.7
Q ss_pred ccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC-C-CCcEEecCccCHHHHHHHHHhhhcCCCcEE
Q 007280 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-G-FPATTIHGDRTQQERELALRSFKSGKTPIL 458 (609)
Q Consensus 381 ~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~-~-~~~~~ihg~~~~~~R~~~~~~F~~g~~~IL 458 (609)
-+.|.+..+.++...... +..+||.++.+..+..+.+.|+.. + ..+..+|+.++..+|.+.+.+..+|+.+|+
T Consensus 170 GSGKTevyl~~i~~~l~~-----Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IV 244 (665)
T PRK14873 170 GEDWARRLAAAAAATLRA-----GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVV 244 (665)
T ss_pred CCcHHHHHHHHHHHHHHc-----CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEE
Confidence 457888888888887754 556999999999999999999764 3 568899999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEcC
Q 007280 459 VATDVAARGLDIPHVAHVVNFD 480 (609)
Q Consensus 459 VaT~v~~~GlDip~v~~VI~~d 480 (609)
|.|..+. =+-++++.+||..+
T Consensus 245 iGtRSAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 245 VGTRSAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred EEcceeE-EeccCCCCEEEEEc
Confidence 9996544 25667778877444
No 294
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.066 Score=61.57 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.0
Q ss_pred ceeeccCCCCchHHhHH
Q 007280 185 LMACAQTGSGKTAAFCF 201 (609)
Q Consensus 185 ~ii~a~TGsGKT~a~ll 201 (609)
+|+++|.|+|||.++.+
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999985443
No 295
>PTZ00293 thymidine kinase; Provisional
Probab=95.02 E-value=0.13 Score=49.44 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=13.5
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
|+=.++++|++||||.-
T Consensus 4 G~i~vi~GpMfSGKTte 20 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE 20 (211)
T ss_pred eEEEEEECCCCChHHHH
Confidence 33457899999999975
No 296
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.18 Score=53.09 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=19.0
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHH
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~ 324 (609)
....-+|||||+|.|.+..- ..+..|+..
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-~~LY~L~r~ 149 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-EVLYSLLRA 149 (366)
T ss_pred cCCeEEEEEcchhhhccccc-hHHHHHHhh
Confidence 34456899999999987653 344444443
No 297
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.96 E-value=0.21 Score=62.05 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHhhHhCC--CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~--~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi 239 (609)
..+++-|++|+..++.. +-++|++..|+|||.+ +-.++..+..... ..+..++.++||---|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~~--------~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLPE--------SERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhhc--------ccCceEEEECCcHHHHHHH
Confidence 36899999999998875 5588999999999984 2223332221110 0113488899997766554
No 298
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.95 E-value=0.13 Score=59.02 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=64.1
Q ss_pred CceEEEEecchhhHHHHHHHHHh----CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-ccccCCCCCCccEEEE
Q 007280 404 QALTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VAARGLDIPHVAHVVN 478 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~~~GlDip~v~~VI~ 478 (609)
..+++|.++|+.-|..+++.+.. .++.+..+||+++..+|.++++.+.+|...|+|+|. .+...+.+.++.+||.
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 56799999999999888777654 368899999999999999999999999999999995 4555678888888883
No 299
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=0.54 Score=50.30 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=25.1
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
+...++|||||+|+|.. .....++..+..++ +. .+++|.++
T Consensus 125 ~~~~kvvIIdea~~l~~----~~~~~LLk~LEep~-~~-t~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSI----AAFNAFLKTLEEPP-PH-AIFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCH----HHHHHHHHHHhcCC-CC-eEEEEEeC
Confidence 56778999999999864 34455566654432 22 33444444
No 300
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.86 E-value=0.14 Score=62.69 Aligned_cols=64 Identities=25% Similarity=0.262 Sum_probs=42.8
Q ss_pred CCCHHHHHHHhhHhCC--CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHH
Q 007280 167 KPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~--~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi 239 (609)
.+++-|++|+..++.. +-++|.+..|+|||.+. -.++..+..... ..+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~e--------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLPE--------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHhh--------ccCceEEEEechHHHHHHH
Confidence 6899999999998854 66889999999999852 112222211000 0113488899997766554
No 301
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.85 E-value=0.12 Score=50.60 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=25.5
Q ss_pred ceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccH
Q 007280 297 MIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (609)
Q Consensus 297 ~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~ 344 (609)
..++|||||+|.+-.. -...+..++..... ....+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~---~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRA---HGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHH---cCCcEEEEeCCCCH
Confidence 3568999999986432 23445555554421 12235777777543
No 302
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.79 E-value=0.13 Score=57.81 Aligned_cols=40 Identities=13% Similarity=0.235 Sum_probs=25.0
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEE
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~S 339 (609)
+...+++||||+|.|.. .....+++.+..++ ....+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~----~a~naLLK~LEePp-~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLST----AAFNAFLKTLEEPP-PHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCH----HHHHHHHHHHhCCC-CCeEEEEEe
Confidence 56678999999999864 34456666665542 333344433
No 303
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.77 E-value=0.08 Score=51.84 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=32.6
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.+..+++.+++|+|||...+--+...+.+.+. .+++++- .+-..++.+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge------------~vlyvs~-ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE------------KVLYVSF-EEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--------------EEEEES-SS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC------------cEEEEEe-cCCHHHHHHHHHHc
Confidence 35678999999999998544434444443121 1677763 45556666666665
No 304
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.74 E-value=0.26 Score=55.10 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=25.8
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeecc
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~ 343 (609)
....+++||||+|+|... ....+++.+..+ +... +++|.+|-+
T Consensus 117 ~~~~kViIIDE~~~Lt~~----a~naLLKtLEep-p~~~-ifIlatt~~ 159 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTG----AFNALLKTLEEP-PAHV-IFILATTEP 159 (559)
T ss_pred cCCeEEEEEECcccCCHH----HHHHHHHHhcCC-CCCe-EEEEEeCCh
Confidence 456889999999987543 445556655543 3333 334444543
No 305
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.69 E-value=0.17 Score=55.95 Aligned_cols=40 Identities=13% Similarity=0.280 Sum_probs=23.7
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEE
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~S 339 (609)
....+++||||||+|... ....+++.+..+ +....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~----a~naLLK~LEep-p~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ----SFNALLKTLEEP-PEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH----HHHHHHHHHhcC-CCCceEEEEE
Confidence 456789999999998653 334444444433 3444444443
No 306
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=0.28 Score=54.99 Aligned_cols=43 Identities=14% Similarity=0.354 Sum_probs=25.2
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeecc
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~ 343 (609)
...++++||||+|+|.... ...+++.+..+ +....+| |.+|-+
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a----~NaLLKtLEEP-P~~~~fI-L~Ttd~ 164 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTA----FNAMLKTLEEP-PEYLKFV-LATTDP 164 (618)
T ss_pred cCCceEEEEEChhhCCHHH----HHHHHHhcccC-CCCeEEE-EEECCc
Confidence 3468999999999886543 34455555433 3334444 444543
No 307
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.66 E-value=0.42 Score=52.45 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.3
Q ss_pred CceeeccCCCCchHHhHH
Q 007280 184 DLMACAQTGSGKTAAFCF 201 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~ll 201 (609)
.+|+++|.|+|||.++.+
T Consensus 45 a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARI 62 (507)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999986544
No 308
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.65 E-value=0.053 Score=59.49 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=49.8
Q ss_pred HHHHHHHhhHhC-----C----CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHH
Q 007280 170 PVQRHAIPISIG-----G----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (609)
Q Consensus 170 ~iQ~~~i~~i~~-----~----~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~ 240 (609)
|+|+..+-.++. + +.+++.-+=+-|||......++..++-.+ ..++.+++++++++-|..++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g---------~~~~~i~~~A~~~~QA~~~f 71 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG---------EPGAEIYCAANTRDQAKIVF 71 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC---------ccCceEEEEeCCHHHHHHHH
Confidence 688888876662 1 34778889999999854433343443321 12245999999999999999
Q ss_pred HHHHHhhcc
Q 007280 241 VEAKKFSYQ 249 (609)
Q Consensus 241 ~~~~~~~~~ 249 (609)
+.++++...
T Consensus 72 ~~~~~~i~~ 80 (477)
T PF03354_consen 72 DEAKKMIEA 80 (477)
T ss_pred HHHHHHHHh
Confidence 999988654
No 309
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.61 E-value=0.2 Score=55.56 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=24.8
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEE
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~S 339 (609)
....+++||||+|+|... ....+++.+..+ +....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~----a~naLLK~LEep-p~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKS----AFNAMLKTLEEP-PEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHH----HHHHHHHHHhCC-CCCEEEEEEe
Confidence 456789999999988653 334455555443 3445555544
No 310
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.61 E-value=0.23 Score=52.36 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=14.4
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
..+++.+|+|+|||.+
T Consensus 41 ~~i~I~G~~GtGKT~l 56 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV 56 (365)
T ss_pred CcEEEECCCCCCHHHH
Confidence 5799999999999984
No 311
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.60 E-value=0.38 Score=52.48 Aligned_cols=29 Identities=7% Similarity=0.193 Sum_probs=19.7
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCC
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM 327 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~ 327 (609)
+...++|||||+|+|.. .....++..+..
T Consensus 115 ~~~~kVvIIDE~h~Lt~----~a~~~LLk~LE~ 143 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTK----EAFNALLKTLEE 143 (472)
T ss_pred cCCeEEEEEEChHHhHH----HHHHHHHHHHHh
Confidence 45678999999999753 334555555543
No 312
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.59 E-value=0.26 Score=53.67 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=55.5
Q ss_pred CHHHHHHHHHCCCCCCCH----HHHHHHhhHhC--CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceE
Q 007280 153 GEALNLNIRRCKYVKPTP----VQRHAIPISIG--GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLA 226 (609)
Q Consensus 153 ~~~l~~~i~~~~~~~pt~----iQ~~~i~~i~~--~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~ 226 (609)
.+.|..+|++..=.+++. +|++==.+|.. ++-++|++..|||||.+++--+.-.++.... .-...| |
T Consensus 191 dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~------~l~~k~-v 263 (747)
T COG3973 191 DEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRG------PLQAKP-V 263 (747)
T ss_pred HHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccc------ccccCc-e
Confidence 345566677665555544 35555555554 4458899999999999865543333332211 111112 9
Q ss_pred EEEcCcHHHHHHHHHHHHHhh
Q 007280 227 LILAPTRELSSQIHVEAKKFS 247 (609)
Q Consensus 227 Lil~Ptr~La~Qi~~~~~~~~ 247 (609)
||+.|.+.+..-|...+-.+.
T Consensus 264 lvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 264 LVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred EEEcCcHHHHHHHHHhchhhc
Confidence 999999999988877776653
No 313
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.52 E-value=0.18 Score=52.14 Aligned_cols=41 Identities=10% Similarity=0.179 Sum_probs=26.3
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SA 340 (609)
....+++|||+||+|.. .....+++.+..| ++...+|+.|.
T Consensus 105 ~g~~KV~iI~~a~~m~~----~AaNaLLKtLEEP-p~~~~fiL~t~ 145 (325)
T PRK06871 105 QGGNKVVYIQGAERLTE----AAANALLKTLEEP-RPNTYFLLQAD 145 (325)
T ss_pred cCCceEEEEechhhhCH----HHHHHHHHHhcCC-CCCeEEEEEEC
Confidence 35678999999999864 4455666666554 34444444443
No 314
>PRK09183 transposase/IS protein; Provisional
Probab=94.52 E-value=0.19 Score=50.28 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=18.0
Q ss_pred HhCCCCceeeccCCCCchHHhH
Q 007280 179 SIGGRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 179 i~~~~d~ii~a~TGsGKT~a~l 200 (609)
+..+.++++.+|+|+|||..+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 4567889999999999998433
No 315
>CHL00181 cbbX CbbX; Provisional
Probab=94.51 E-value=0.3 Score=49.71 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=15.7
Q ss_pred CCCceeeccCCCCchHHhH
Q 007280 182 GRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~l 200 (609)
+.++++.+++|+|||..+-
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4568999999999998644
No 316
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.51 E-value=0.069 Score=54.49 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=46.2
Q ss_pred HHHHCCCCCCCHHHHHHHhhHhCCC-CceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHH
Q 007280 159 NIRRCKYVKPTPVQRHAIPISIGGR-DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (609)
Q Consensus 159 ~i~~~~~~~pt~iQ~~~i~~i~~~~-d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 237 (609)
...-..|..+++-|...+..+...+ ++++++.||||||+ ++..+...-... -++|++--|.||-.
T Consensus 149 l~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT-----lLNal~~~i~~~---------eRvItiEDtaELql 214 (355)
T COG4962 149 LLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-----LLNALSGFIDSD---------ERVITIEDTAELQL 214 (355)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-----HHHHHHhcCCCc---------ccEEEEeehhhhcc
Confidence 3334477889999999998777665 99999999999998 333333221111 13888888888754
Q ss_pred H
Q 007280 238 Q 238 (609)
Q Consensus 238 Q 238 (609)
+
T Consensus 215 ~ 215 (355)
T COG4962 215 A 215 (355)
T ss_pred C
Confidence 4
No 317
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.47 E-value=0.23 Score=51.62 Aligned_cols=16 Identities=50% Similarity=0.652 Sum_probs=14.1
Q ss_pred CceeeccCCCCchHHh
Q 007280 184 DLMACAQTGSGKTAAF 199 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~ 199 (609)
.+++.+|+|+|||..+
T Consensus 38 ~lll~Gp~GtGKT~la 53 (337)
T PRK12402 38 HLLVQGPPGSGKTAAV 53 (337)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999843
No 318
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.33 E-value=0.33 Score=45.63 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=51.0
Q ss_pred ceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChH
Q 007280 185 LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPIN 264 (609)
Q Consensus 185 ~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~ 264 (609)
.++++|+.||||.. +|+.+..-.... -.++|..|...- + .+...+...-|...
T Consensus 7 ~~i~gpM~SGKT~e----Ll~r~~~~~~~g---------~~v~vfkp~iD~---------R----~~~~~V~Sr~G~~~- 59 (201)
T COG1435 7 EFIYGPMFSGKTEE----LLRRARRYKEAG---------MKVLVFKPAIDT---------R----YGVGKVSSRIGLSS- 59 (201)
T ss_pred EEEEccCcCcchHH----HHHHHHHHHHcC---------CeEEEEeccccc---------c----cccceeeeccCCcc-
Confidence 57899999999995 333333322221 127888775221 1 12233333333321
Q ss_pred HHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchh
Q 007280 265 QQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR 308 (609)
Q Consensus 265 ~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~ 308 (609)
.-++|-.+..+.+.+......+. +++|.+|||+-
T Consensus 60 ---------~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF 93 (201)
T COG1435 60 ---------EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQF 93 (201)
T ss_pred ---------cceecCChHHHHHHHHhcccCCC-cCEEEEehhHh
Confidence 35677777777777765433222 78999999995
No 319
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=94.33 E-value=0.11 Score=52.10 Aligned_cols=30 Identities=10% Similarity=0.030 Sum_probs=19.4
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHhhHhCC
Q 007280 153 GEALNLNIRRCKYVKPTPVQRHAIPISIGG 182 (609)
Q Consensus 153 ~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~ 182 (609)
.-.|++.|+.+.|.-+---|...-.+++.+
T Consensus 5 e~~lvdslk~l~~qg~~~k~~~lsral~ag 34 (465)
T KOG3973|consen 5 ELYLVDSLKALSFQGHCQKQENLSRALMAG 34 (465)
T ss_pred HHHHHHHHHHhccCCcccchhhHHHHHHcC
Confidence 345777888888877766665555555543
No 320
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.29 E-value=0.34 Score=44.45 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=38.7
Q ss_pred ccceEEEEeccchhhhhcCC--HHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHH
Q 007280 295 LQMIRYLALDEADRMLDMGF--EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf--~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~ 351 (609)
...+++|||||+=..+..++ .+++..+++.. +...-+|+.+-..|+++.+++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r----p~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAK----PEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC----CCCCEEEEECCCCCHHHHHhCc
Confidence 45689999999998877774 34556666554 5566778888888888777665
No 321
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.19 E-value=0.23 Score=52.55 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=38.2
Q ss_pred ceEEEEeccchhhhhc-CCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHH
Q 007280 297 MIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLA 350 (609)
Q Consensus 297 ~i~~lVlDEah~~l~~-gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~ 350 (609)
++++|++|.++.+... ...+.+-++++.+.. ...|+|+.|...|.++..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~---~~kqIvltsdr~P~~l~~~~ 226 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE---NGKQIVLTSDRPPKELNGLE 226 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHh---cCCEEEEEcCCCchhhcccc
Confidence 6889999999987644 356777888887743 33488998888888776443
No 322
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.17 E-value=0.31 Score=51.78 Aligned_cols=141 Identities=17% Similarity=0.093 Sum_probs=75.0
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHH
Q 007280 155 ALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE 234 (609)
Q Consensus 155 ~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 234 (609)
.+++.|+. ++..+-..|+++.-..-.|.- .|.+=.|||||...++- +..+. .++|+ -+++|.+=|+.
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~K-aa~lh----~knPd------~~I~~Tfftk~ 217 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHK-AAELH----SKNPD------SRIAFTFFTKI 217 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHH-HHHHh----cCCCC------ceEEEEeehHH
Confidence 33444432 333445567666544444444 56788899999842221 12222 22222 23999999999
Q ss_pred HHHHHHHHHHHhhccC--------CeEEEEEECCcChHHHHHHHhcCCCEEEeChH-------HHHHHHHcccccccceE
Q 007280 235 LSSQIHVEAKKFSYQT--------GVKVVVAYGGAPINQQLRELERGVDILVATPG-------RLVDLLERARVSLQMIR 299 (609)
Q Consensus 235 La~Qi~~~~~~~~~~~--------~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg-------~L~~~l~~~~~~l~~i~ 299 (609)
|+.++...+.+|+... .+-++.-.||....-........|+..=.|.. -+..-+-....+..-++
T Consensus 218 L~s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD 297 (660)
T COG3972 218 LASTMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYD 297 (660)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhcccccc
Confidence 9999998888875221 23344445666543332222222222222211 11111112222366689
Q ss_pred EEEeccchh
Q 007280 300 YLALDEADR 308 (609)
Q Consensus 300 ~lVlDEah~ 308 (609)
+|.+||++-
T Consensus 298 ~ilIDE~QD 306 (660)
T COG3972 298 YILIDESQD 306 (660)
T ss_pred EEEeccccc
Confidence 999999986
No 323
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.15 E-value=0.2 Score=52.93 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=31.9
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.+.-+++.+++|+|||...+ -++..+.... -.++++.-. +...|+...+.++
T Consensus 81 ~GslvLI~G~pG~GKStLll-q~a~~~a~~g------------~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLL-QVAARLAKRG------------GKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHH-HHHHHHHhcC------------CeEEEEECC-cCHHHHHHHHHHc
Confidence 35668899999999998433 2333333221 127777653 4567776666665
No 324
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.06 E-value=0.16 Score=46.92 Aligned_cols=42 Identities=17% Similarity=0.354 Sum_probs=24.2
Q ss_pred cceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 007280 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~ 342 (609)
...+++||||||.|... ....+++.+..+ +....+||+|...
T Consensus 101 ~~~KviiI~~ad~l~~~----a~NaLLK~LEep-p~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE----AQNALLKTLEEP-PENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH----HHHHHHHHHHST-TTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH----HHHHHHHHhcCC-CCCEEEEEEECCh
Confidence 56899999999998643 333444444333 4455555555443
No 325
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.05 E-value=0.44 Score=54.70 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=18.3
Q ss_pred cceEEEEeccchhhhhcCCHHHHHHHHHH
Q 007280 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~gf~~~i~~i~~~ 324 (609)
..+.+|||||+|.|.... ...+..++..
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHH
Confidence 346789999999987542 3344445543
No 326
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.01 E-value=0.091 Score=50.71 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=13.5
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
++|+++|.|+|||..
T Consensus 52 h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTL 66 (233)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred eEEEECCCccchhHH
Confidence 589999999999983
No 327
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.97 E-value=0.28 Score=62.46 Aligned_cols=63 Identities=24% Similarity=0.263 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHhhHhCC--CCceeeccCCCCchHHhH--HHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFC--FPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~--~d~ii~a~TGsGKT~a~l--lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi 239 (609)
..+++.|++|+..++.+ +-++|.+..|+|||.+.. +-.+..++... +..++.++||-.-+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~-----------g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESE-----------QLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhc-----------CCeEEEEeChHHHHHHH
Confidence 46899999999998865 446789999999998431 01122222211 13388899997666554
No 328
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.96 E-value=1.2 Score=46.87 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=15.1
Q ss_pred CCCceeeccCCCCchHHhH
Q 007280 182 GRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~l 200 (609)
++.+++++|+|+|||....
T Consensus 206 ~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4557899999999998543
No 329
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.96 E-value=0.54 Score=48.92 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=27.7
Q ss_pred CCHHHHHHHhhHhC--C---CCceeeccCCCCchHHhHHHHHHHHHh
Q 007280 168 PTPVQRHAIPISIG--G---RDLMACAQTGSGKTAAFCFPIISGIMR 209 (609)
Q Consensus 168 pt~iQ~~~i~~i~~--~---~d~ii~a~TGsGKT~a~llpil~~l~~ 209 (609)
++|+|...+..+.. + .-+++.+|.|+|||..+.. +...++.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcC
Confidence 36888888876653 2 2478999999999986543 3334443
No 330
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.92 E-value=0.25 Score=56.25 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=63.7
Q ss_pred CceEEEEecchhhHHHHHHHHHh----CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-ccccCCCCCCccEEEE
Q 007280 404 QALTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VAARGLDIPHVAHVVN 478 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~~~GlDip~v~~VI~ 478 (609)
..+++|.+||+.-+..+++.+.. .++.+..+||+++..+|..+++...+|+.+|+|+|. .+...+.+.++.+||.
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 55799999999999888776654 368899999999999999999999999999999994 4455678888888873
No 331
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.90 E-value=0.32 Score=49.44 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=15.9
Q ss_pred CCCceeeccCCCCchHHhH
Q 007280 182 GRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~l 200 (609)
+.++++.+|+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999998653
No 332
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.89 E-value=0.24 Score=46.85 Aligned_cols=30 Identities=17% Similarity=0.385 Sum_probs=21.3
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCC
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMP 328 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~ 328 (609)
.....+|||||+|+|.. .....++..+..+
T Consensus 94 ~~~~kviiide~~~l~~----~~~~~Ll~~le~~ 123 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE----AAANALLKTLEEP 123 (188)
T ss_pred cCCeEEEEEechhhhCH----HHHHHHHHHhcCC
Confidence 45678999999999854 3455566666554
No 333
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.88 E-value=0.1 Score=53.84 Aligned_cols=58 Identities=26% Similarity=0.276 Sum_probs=37.6
Q ss_pred CCHHHHHHHhhH-hCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHH
Q 007280 168 PTPVQRHAIPIS-IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (609)
Q Consensus 168 pt~iQ~~~i~~i-~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 236 (609)
+++.|.+.+..+ ..+.+++++++||||||. ++-.++..+...... -+++++=.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~~~~----------~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVASAPE----------DRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcCCCC----------ceEEEecCCcccc
Confidence 567787777544 467889999999999998 334444443321111 1277777777763
No 334
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.81 E-value=0.26 Score=54.79 Aligned_cols=135 Identities=18% Similarity=0.099 Sum_probs=80.8
Q ss_pred hCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCC--eEEEEE
Q 007280 180 IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTG--VKVVVA 257 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~--i~~~~~ 257 (609)
...+-.++..|=-.|||.... +++..++.... +..+++++|.+..++.++++++.+...+. -.+..+
T Consensus 252 fkqk~tVflVPRR~GKTwivv-~iI~~ll~s~~----------Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~v 320 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLV-PLIALALATFR----------GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHV 320 (738)
T ss_pred hhccceEEEecccCCchhhHH-HHHHHHHHhCC----------CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeee
Confidence 445678899999999999544 66665554321 13499999999999999999988765431 111112
Q ss_pred ECCcChHHHHHHHhcC--CCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceE
Q 007280 258 YGGAPINQQLRELERG--VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQT 335 (609)
Q Consensus 258 ~gg~~~~~~~~~l~~~--~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~ 335 (609)
.| ..+ .-.+..+ ..|.+++- -......=..+++||+|||+-+-+ +.+..++-.+. ..+.++
T Consensus 321 kG-e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~---~~n~k~ 383 (738)
T PHA03368 321 KG-ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLN---QTNCKI 383 (738)
T ss_pred cC-cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHh---ccCccE
Confidence 22 111 0011222 24555531 011112234689999999997765 34444443332 336788
Q ss_pred EEEEeec
Q 007280 336 MLFSATF 342 (609)
Q Consensus 336 il~SAT~ 342 (609)
|++|.|-
T Consensus 384 I~ISS~N 390 (738)
T PHA03368 384 IFVSSTN 390 (738)
T ss_pred EEEecCC
Confidence 9998884
No 335
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.77 E-value=0.56 Score=47.03 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCCHHHHHHHhhHh----CCC-CceeeccCCCCchHH
Q 007280 167 KPTPVQRHAIPISI----GGR-DLMACAQTGSGKTAA 198 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~----~~~-d~ii~a~TGsGKT~a 198 (609)
-+++.+++++..+. .+. .+++++++|+|||+.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 45666666665443 233 478999999999983
No 336
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.75 E-value=0.29 Score=53.13 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=32.9
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhh
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~ 247 (609)
.+.-+++.+++|+|||.. ++-++..+.+.. -.+|+++- .+-..|+...+.++.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL-~lq~a~~~a~~g------------~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTL-LLQVAARLAAAG------------GKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHHH-HHHHHHHHHhcC------------CeEEEEEc-cccHHHHHHHHHHcC
Confidence 355688999999999984 332333332211 12777764 466678877776653
No 337
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.45 Score=51.07 Aligned_cols=52 Identities=21% Similarity=0.462 Sum_probs=35.5
Q ss_pred ccceEEEEeccchhhhhcC-----CHHHHHH-HHHHcCCCCCCCceEEEEEeeccHHH
Q 007280 295 LQMIRYLALDEADRMLDMG-----FEPQIRK-IVQQMDMPPPGMRQTMLFSATFPKEI 346 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~g-----f~~~i~~-i~~~l~~~~~~~~q~il~SAT~~~~~ 346 (609)
-+.+++||+|++.+++|+. |...+.. ++-.++..+|+.++++.|..|-..++
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~v 653 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREV 653 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHH
Confidence 3557899999999999975 5554443 33445566677777888877754443
No 338
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.73 E-value=0.94 Score=48.50 Aligned_cols=54 Identities=7% Similarity=0.141 Sum_probs=28.6
Q ss_pred ceEEEEeccchhhhh-cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhh
Q 007280 297 MIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354 (609)
Q Consensus 297 ~i~~lVlDEah~~l~-~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l 354 (609)
.+++||+|=+-++-. .....++..+.... .+...++.++||...+....++.|.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~----~p~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAI----QPDNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhc----CCcEEEEEeccccChhHHHHHHHHH
Confidence 356677776655321 11223344443333 3344577788887666555666654
No 339
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.72 E-value=0.74 Score=46.43 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=33.5
Q ss_pred cceEEEEeccchhhh-hcCCHHHHHHHHHHcC--CCCCCCceEEEEEeeccHHHHHHHHHhh
Q 007280 296 QMIRYLALDEADRML-DMGFEPQIRKIVQQMD--MPPPGMRQTMLFSATFPKEIQRLASDFL 354 (609)
Q Consensus 296 ~~i~~lVlDEah~~l-~~gf~~~i~~i~~~l~--~~~~~~~q~il~SAT~~~~~~~l~~~~l 354 (609)
..+++||+|=+-++- +.....++..+...+. .....+..++.++||...+....+..|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 446788888776643 2222345555555442 1112445688899997665555555554
No 340
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.71 E-value=0.36 Score=49.57 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=18.4
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
.+.+++.+++|+|||.. +.++...+.
T Consensus 156 ~~gl~L~G~~G~GKThL-a~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL-LAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 45799999999999984 233444444
No 341
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.70 E-value=0.29 Score=48.33 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=34.4
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhh
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~ 247 (609)
.+..+++.+++|+|||+..+-.+...+.+.. .+|+++ +.+-..|+.+.+..|.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge-------------~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-------------PGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-------------cEEEEE-eeCCHHHHHHHHHHhC
Confidence 3567899999999999854443443332211 167776 4566777777777654
No 342
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.61 E-value=0.34 Score=50.40 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.5
Q ss_pred CCceeeccCCCCchHHh
Q 007280 183 RDLMACAQTGSGKTAAF 199 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~ 199 (609)
.++|+.+|.|+|||..+
T Consensus 49 ~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 49 HSMILWGPPGTGKTTLA 65 (436)
T ss_pred ceeEEECCCCCCHHHHH
Confidence 36899999999999844
No 343
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.60 E-value=1.1 Score=50.23 Aligned_cols=69 Identities=13% Similarity=0.111 Sum_probs=47.7
Q ss_pred CCHHHHHHHhhHh---CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 168 PTPVQRHAIPISI---GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 168 pt~iQ~~~i~~i~---~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
|.|.=.+-|..++ ..+-.++.+|=+.|||.+..+.++ .++... +..++|++|...-+.++++.++
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f~-----------Gi~IlvTAH~~~ts~evF~rv~ 237 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISFL-----------EIDIVVQAQRKTMCLTLYNRVE 237 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHhc-----------CCeEEEECCChhhHHHHHHHHH
Confidence 4555555555444 456678899999999986544333 433211 1239999999999999998888
Q ss_pred Hhhc
Q 007280 245 KFSY 248 (609)
Q Consensus 245 ~~~~ 248 (609)
++..
T Consensus 238 ~~le 241 (752)
T PHA03333 238 TVVH 241 (752)
T ss_pred HHHH
Confidence 8765
No 344
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.078 Score=55.31 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.7
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
..|+|+.+|||||||+.
T Consensus 226 KSNvLllGPtGsGKTll 242 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLL 242 (564)
T ss_pred cccEEEECCCCCchhHH
Confidence 45799999999999983
No 345
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.54 E-value=0.33 Score=57.20 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=63.4
Q ss_pred CceEEEEecchhhHHHHHHHHHhC----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-ccccCCCCCCccEEE
Q 007280 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VAARGLDIPHVAHVV 477 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~~~GlDip~v~~VI 477 (609)
..+++|.+||..-|..+++.+... ++.+..+++..+..++.++++.++.|+.+|||+|. ++...+.+.++.+||
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 457999999999999988877653 56677899999999999999999999999999994 566678888999887
No 346
>COG4371 Predicted membrane protein [Function unknown]
Probab=93.51 E-value=0.18 Score=48.24 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=5.9
Q ss_pred CCCCCCCCCCCC
Q 007280 576 YSGVNSSSSAYG 587 (609)
Q Consensus 576 ~~~~~~~~~~~g 587 (609)
|++++.+|+|||
T Consensus 78 Y~gg~Y~GGGfg 89 (334)
T COG4371 78 YSGGGYSGGGFG 89 (334)
T ss_pred CCCCCCCCCCcC
Confidence 344444455554
No 347
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.50 E-value=0.54 Score=46.18 Aligned_cols=53 Identities=8% Similarity=0.091 Sum_probs=30.9
Q ss_pred hCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 180 IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
..+.-+++.+++|+|||+..+- ++..+.+.. ..+++++. -+-..++.+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~-~~~~~~~~g------------~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQR-LAYGFLQNG------------YSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHH-HHHHHHhCC------------CcEEEEeC-CCCHHHHHHHHHHh
Confidence 3466788999999999984322 333333221 12677773 34445555555544
No 348
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.46 E-value=0.86 Score=51.50 Aligned_cols=29 Identities=7% Similarity=0.209 Sum_probs=20.0
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCC
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM 327 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~ 327 (609)
....++|||||||+|.. .....+++.+..
T Consensus 119 ~~~~KViIIDEad~Lt~----~a~naLLK~LEe 147 (620)
T PRK14948 119 QARWKVYVIDECHMLST----AAFNALLKTLEE 147 (620)
T ss_pred cCCceEEEEECccccCH----HHHHHHHHHHhc
Confidence 35678999999998854 344555555544
No 349
>PLN03025 replication factor C subunit; Provisional
Probab=93.44 E-value=0.46 Score=49.22 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=14.4
Q ss_pred CCceeeccCCCCchHHh
Q 007280 183 RDLMACAQTGSGKTAAF 199 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~ 199 (609)
.++++++|.|+|||..+
T Consensus 35 ~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI 51 (319)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36899999999999853
No 350
>PRK05973 replicative DNA helicase; Provisional
Probab=93.43 E-value=0.26 Score=48.40 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHCCCC----------CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCc
Q 007280 151 DLGEALNLNIRRCKYV----------KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSR 220 (609)
Q Consensus 151 ~l~~~l~~~i~~~~~~----------~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~ 220 (609)
.|++.+.+.-.+-||. .+||..+ ..--+..+.-++|.|++|+|||+..+--+... .+.+.
T Consensus 24 ~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~-a~~Ge-------- 93 (237)
T PRK05973 24 PLHEALDRIAAEEGFSSWSLLAAKAAATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEA-MKSGR-------- 93 (237)
T ss_pred cHHHHHHHHHHHhccchHHHHHHhccCCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHH-HhcCC--------
Confidence 3455555444444553 4566332 44445566778999999999998544333333 22221
Q ss_pred cccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 221 TVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 221 ~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.+++++-- +-..|+.+.+..+
T Consensus 94 ----~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 94 ----TGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred ----eEEEEEEe-CCHHHHHHHHHHc
Confidence 16666432 3356777777765
No 351
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=0.28 Score=50.96 Aligned_cols=16 Identities=31% Similarity=0.573 Sum_probs=14.6
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
+++|.-+|+|+|||++
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999983
No 352
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.31 E-value=0.73 Score=43.53 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=37.8
Q ss_pred ccceEEEEeccchhhhhcCC--HHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHH
Q 007280 295 LQMIRYLALDEADRMLDMGF--EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASD 352 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf--~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~ 352 (609)
-..+++|||||+=..++.++ .+++..+++.. |...-+|+.--..|+++.+++..
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r----p~~~evVlTGR~~p~~Lie~ADl 168 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNAR----PGMQHVVITGRGAPRELIEAADL 168 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC----CCCCEEEEECCCCCHHHHHhCch
Confidence 35689999999999888885 34555555543 55556666666678877776653
No 353
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.26 E-value=0.5 Score=50.39 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=32.2
Q ss_pred ccCccccCCCCHHHHHHHHHC---CCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHH
Q 007280 143 AVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 143 ~~~~f~~~~l~~~l~~~i~~~---~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a 198 (609)
|..+|.+++-.+...+.|+.. .+..|.-++...+ ...+.+++.+|+|+|||+.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHH
Confidence 445788886555555554432 2333333333322 2357899999999999983
No 354
>PHA00729 NTP-binding motif containing protein
Probab=93.24 E-value=0.7 Score=44.91 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=37.1
Q ss_pred CCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhc-CCH----HHHHHHHHHcCCCCCCCceEEEEEeeccHHHHH
Q 007280 274 VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM-GFE----PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (609)
Q Consensus 274 ~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~-gf~----~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~ 348 (609)
...++.+...|++.+.........+++|||||+=--+.. .+. .....+...+ ....+++.+...-+.++..
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aL----rSR~~l~il~~ls~edL~~ 134 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALI----RTRVSAVIFTTPSPEDLAF 134 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHH----HhhCcEEEEecCCHHHHHH
Confidence 356666666676666542222344678999994321110 011 1112233333 1223566666665666666
Q ss_pred HHHH
Q 007280 349 LASD 352 (609)
Q Consensus 349 l~~~ 352 (609)
.++.
T Consensus 135 ~Lr~ 138 (226)
T PHA00729 135 YLRE 138 (226)
T ss_pred HHHh
Confidence 5554
No 355
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.18 E-value=0.7 Score=45.22 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=16.1
Q ss_pred CCCCceeeccCCCCchHHhH
Q 007280 181 GGRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~l 200 (609)
.+..+++.+++|+|||...+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred CCeEEEEECCCCCChHHHHH
Confidence 45678899999999998443
No 356
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.12 E-value=1.6 Score=40.57 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=29.0
Q ss_pred cceEEEEeccchhhh-hcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhh
Q 007280 296 QMIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354 (609)
Q Consensus 296 ~~i~~lVlDEah~~l-~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l 354 (609)
...++||+|....+. +......+..+.... .....++.++|+...+..+.+..+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~----~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVV----KPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhc----CCCeEEEEEECCCChHHHHHHHHHH
Confidence 356789999988643 111223333333222 2344566777765555555555543
No 357
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.11 E-value=0.7 Score=51.59 Aligned_cols=41 Identities=17% Similarity=0.385 Sum_probs=25.1
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
....+++||||+|+|.. .....++..+..+ +. .-+++|.+|
T Consensus 117 ~~~~KVvIIDEa~~Ls~----~a~naLLK~LEep-p~-~~vfI~~tt 157 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSN----SAFNALLKTIEEP-PP-YIVFIFATT 157 (563)
T ss_pred cCCCEEEEEEChhhcCH----HHHHHHHHhhccC-CC-CEEEEEecC
Confidence 45678999999998754 3445556665543 22 334444444
No 358
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.10 E-value=0.15 Score=52.69 Aligned_cols=57 Identities=30% Similarity=0.376 Sum_probs=37.8
Q ss_pred CCHHHHHHHhh-HhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHH
Q 007280 168 PTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTREL 235 (609)
Q Consensus 168 pt~iQ~~~i~~-i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 235 (609)
+++.|.+.+.. +..+++++++++||||||. ++-.++..+...... .+++++-.+.||
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~~~----------~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQDPT----------ERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcCCC----------ceEEEEcCCCcc
Confidence 56778777764 4567889999999999997 344444433211111 137788888776
No 359
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.09 E-value=0.045 Score=60.97 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=46.0
Q ss_pred CCCHHHHHHHhhHhCC--CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHH
Q 007280 167 KPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~--~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~ 240 (609)
..+|+|.+.+..+... +.++++..+-+|||.+.+. ++.+++...+.. +|++.||.++|..+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~~~P~~-----------~l~v~Pt~~~a~~~~ 79 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSIDQDPGP-----------MLYVQPTDDAAKDFS 79 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEEeCCCC-----------EEEEEEcHHHHHHHH
Confidence 5789999999887754 5688899999999995333 443443333221 899999999999986
No 360
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=0.19 Score=54.82 Aligned_cols=53 Identities=21% Similarity=0.333 Sum_probs=30.3
Q ss_pred cccCccccCCCCHHHHHHHHHC---CCCCCCHHHHHHHhhHhCCCCceeeccCCCCchH
Q 007280 142 PAVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~i~~~---~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~ 197 (609)
-|..+|++.+--+.+...+... .+++|--+++-.|. .-..+++|+|.|||||+
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTL 560 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTL 560 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHH
Confidence 3456788877555554444321 22223333322221 14569999999999998
No 361
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.01 E-value=0.23 Score=51.69 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=27.8
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
....+++|||+||+|.. ..-..+++.+..| +....+||.|.-
T Consensus 106 ~g~~kV~iI~~ae~m~~----~AaNaLLKtLEEP-p~~t~fiL~t~~ 147 (334)
T PRK07993 106 LGGAKVVWLPDAALLTD----AAANALLKTLEEP-PENTWFFLACRE 147 (334)
T ss_pred cCCceEEEEcchHhhCH----HHHHHHHHHhcCC-CCCeEEEEEECC
Confidence 45689999999999864 4556667777665 344445555443
No 362
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.00 E-value=0.43 Score=47.12 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=19.8
Q ss_pred hCCCCceeeccCCCCchHHhHHHHHHHHHh
Q 007280 180 IGGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a~llpil~~l~~ 209 (609)
..+.-++++|++|+|||.. ++-++.++..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~-~~~~~~~~~~ 39 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAF-ALNIAENIAK 39 (242)
T ss_pred CCCeEEEEEeCCCCCHHHH-HHHHHHHHHH
Confidence 3456688999999999984 4434444443
No 363
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.98 E-value=0.093 Score=51.46 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.9
Q ss_pred ceeeccCCCCchH
Q 007280 185 LMACAQTGSGKTA 197 (609)
Q Consensus 185 ~ii~a~TGsGKT~ 197 (609)
++|.+..|||||.
T Consensus 1 ~vv~G~pGsGKSt 13 (234)
T PF01443_consen 1 IVVHGVPGSGKST 13 (234)
T ss_pred CEEEcCCCCCHHH
Confidence 5789999999999
No 364
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.97 E-value=0.72 Score=51.80 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=24.9
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeecc
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~ 343 (609)
....+++||||+|+|... ....+++.+..+ +....+| |.+|-+
T Consensus 117 ~~~~KVvIIdev~~Lt~~----a~naLLk~LEep-p~~~~fI-l~t~~~ 159 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN----AFNALLKTLEEP-PPHVKFI-FATTEP 159 (576)
T ss_pred cCCceEEEEEChhhCCHH----HHHHHHHHHHcC-CCCeEEE-EEeCCh
Confidence 456899999999987643 334445555433 3334344 444533
No 365
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.93 E-value=0.093 Score=49.12 Aligned_cols=45 Identities=27% Similarity=0.276 Sum_probs=30.7
Q ss_pred HHHHhcCCCEEEeChHHHHHHHHccccc--ccceEEEEeccchhhhh
Q 007280 267 LRELERGVDILVATPGRLVDLLERARVS--LQMIRYLALDEADRMLD 311 (609)
Q Consensus 267 ~~~l~~~~~IlV~Tpg~L~~~l~~~~~~--l~~i~~lVlDEah~~l~ 311 (609)
.+.....++|||+++..|++-.....+. ...-.+|||||||.+.+
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3445557899999999988765443332 23446899999998765
No 366
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.92 E-value=0.33 Score=55.24 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=80.1
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC-CCCcEEecCccCHHHHHHHHHhhhcCC
Q 007280 376 VEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-GFPATTIHGDRTQQERELALRSFKSGK 454 (609)
Q Consensus 376 ~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~R~~~~~~F~~g~ 454 (609)
+.-+.-+.|.+..+.++...... +..+||.++.+.....+.+.|... +.++..+|+++++.+|.+.+.+.++|+
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~-----GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~ 296 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQ-----GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGE 296 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHc-----CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCC
Confidence 34556778889999999888865 567999999999998888888654 788999999999999999999999999
Q ss_pred CcEEEEccccccCCCCCCccEEE
Q 007280 455 TPILVATDVAARGLDIPHVAHVV 477 (609)
Q Consensus 455 ~~ILVaT~v~~~GlDip~v~~VI 477 (609)
.+|+|.|..+- =+-++++.+||
T Consensus 297 ~~vVIGtRSAl-F~Pf~~LGLII 318 (730)
T COG1198 297 ARVVIGTRSAL-FLPFKNLGLII 318 (730)
T ss_pred ceEEEEechhh-cCchhhccEEE
Confidence 99999996543 24567777777
No 367
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.91 E-value=0.13 Score=51.60 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=15.9
Q ss_pred hCCCCceeeccCCCCchHH
Q 007280 180 IGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a 198 (609)
++..|+++.+|||||||+.
T Consensus 95 L~KSNILLiGPTGsGKTlL 113 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLL 113 (408)
T ss_pred eeeccEEEECCCCCcHHHH
Confidence 3456799999999999983
No 368
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.87 E-value=0.43 Score=50.85 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=14.8
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
.+.+++.+|+|+|||+.
T Consensus 165 p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCceEEECCCCCChHHH
Confidence 36799999999999983
No 369
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.85 E-value=0.57 Score=48.27 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=27.5
Q ss_pred CCCHHHHHHHhhHh----CCC---CceeeccCCCCchHHhHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISI----GGR---DLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~----~~~---d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
.++|+|...+..+. +++ -++++++.|.||+..+.. +.+.++
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~-~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL-FSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHc
Confidence 46788877776554 333 488999999999975443 333443
No 370
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.85 E-value=0.63 Score=50.06 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=13.6
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
.+++.+|+|+|||..
T Consensus 38 ~ilL~GppGtGKTtL 52 (413)
T PRK13342 38 SMILWGPPGTGKTTL 52 (413)
T ss_pred eEEEECCCCCCHHHH
Confidence 689999999999984
No 371
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.82 E-value=0.69 Score=50.30 Aligned_cols=147 Identities=11% Similarity=0.065 Sum_probs=81.5
Q ss_pred CCCHHHHHHHhhHhC------C----CCceeeccCCCCchHHhH-HHHHHHHHhhhcccCCCCCccccceEEEEcCcHHH
Q 007280 167 KPTPVQRHAIPISIG------G----RDLMACAQTGSGKTAAFC-FPIISGIMREQYVQRPRGSRTVYPLALILAPTREL 235 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~------~----~d~ii~a~TGsGKT~a~l-lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 235 (609)
.+-|+|+-++-.|+- + +..+|..+-+-|||.... |.+...+..... +-.+.|++|+.+-
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~----------~~~~~i~A~s~~q 130 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRS----------GAGIYILAPSVEQ 130 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhc----------CCcEEEEeccHHH
Confidence 568999999988872 1 236888999999997433 222222332211 1239999999999
Q ss_pred HHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHH---HHHHHHc--ccccccceEEEEeccchhhh
Q 007280 236 SSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGR---LVDLLER--ARVSLQMIRYLALDEADRML 310 (609)
Q Consensus 236 a~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~---L~~~l~~--~~~~l~~i~~lVlDEah~~l 310 (609)
+.+.+..++....... +... ......+-...+... .+..+.. ...+-.+..+.|+||.|...
T Consensus 131 a~~~F~~ar~mv~~~~----------~l~~---~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~ 197 (546)
T COG4626 131 AANSFNPARDMVKRDD----------DLRD---LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFG 197 (546)
T ss_pred HHHhhHHHHHHHHhCc----------chhh---hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhc
Confidence 9999888877544322 0000 000111222222221 1222211 22334456789999999865
Q ss_pred hcCCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 007280 311 DMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (609)
Q Consensus 311 ~~gf~~~i~~i~~~l~~~~~~~~q~il~SA 340 (609)
+.+ ..+..+..-+.. .+..+++..|.
T Consensus 198 ~~~--~~~~~~~~g~~a--r~~~l~~~ITT 223 (546)
T COG4626 198 KQE--DMYSEAKGGLGA--RPEGLVVYITT 223 (546)
T ss_pred CHH--HHHHHHHhhhcc--CcCceEEEEec
Confidence 432 445555554433 34455555554
No 372
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.70 E-value=0.22 Score=50.93 Aligned_cols=58 Identities=26% Similarity=0.406 Sum_probs=35.9
Q ss_pred CCHHHHHHHhh-HhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHH
Q 007280 168 PTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (609)
Q Consensus 168 pt~iQ~~~i~~-i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 236 (609)
+++-|.+.+.. +..+++++++++||||||.. +-.++..+...... -+++++-.+.||.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~~~----------~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKNDPT----------DRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccCCC----------ceEEEECCchhhc
Confidence 45556666654 44677899999999999983 33333333221111 1278888887873
No 373
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.66 E-value=0.53 Score=51.80 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=20.1
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCC
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM 327 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~ 327 (609)
+...++|||||+|.|.. ..+..++..+..
T Consensus 114 ~~~~kVVIIDEad~ls~----~a~naLLk~LEe 142 (504)
T PRK14963 114 RGGRKVYILDEAHMMSK----SAFNALLKTLEE 142 (504)
T ss_pred cCCCeEEEEECccccCH----HHHHHHHHHHHh
Confidence 45678999999998743 445556666544
No 374
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.65 E-value=0.89 Score=42.29 Aligned_cols=53 Identities=21% Similarity=0.402 Sum_probs=38.3
Q ss_pred ccceEEEEeccchhhhhcCC--HHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHH
Q 007280 295 LQMIRYLALDEADRMLDMGF--EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf--~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~ 351 (609)
-..+++|||||+=..++.++ .+++..+++.. |....+|+..-..|+++.+++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r----p~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQER----PGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC----CCCCEEEEECCCCCHHHHHhCc
Confidence 35689999999998888774 34555555554 5566777777778888777665
No 375
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.64 E-value=1 Score=47.92 Aligned_cols=57 Identities=7% Similarity=0.094 Sum_probs=30.4
Q ss_pred cceEEEEeccchhhh-hcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccH-HHHHHHHHh
Q 007280 296 QMIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK-EIQRLASDF 353 (609)
Q Consensus 296 ~~i~~lVlDEah~~l-~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~-~~~~l~~~~ 353 (609)
..+++||+|=+-++. +..-...+..++...... .+...++.+|||... ++...+..|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~-~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEK-DSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCC-CCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 456889999766542 211223334444333211 123457888999865 555555544
No 376
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.58 E-value=0.69 Score=45.35 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=17.2
Q ss_pred hHhCCC-CceeeccCCCCchHHhH
Q 007280 178 ISIGGR-DLMACAQTGSGKTAAFC 200 (609)
Q Consensus 178 ~i~~~~-d~ii~a~TGsGKT~a~l 200 (609)
.+..++ -+.++++.|||||+..=
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH
Confidence 444556 57799999999998543
No 377
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=92.56 E-value=1.8 Score=44.85 Aligned_cols=137 Identities=16% Similarity=0.231 Sum_probs=72.0
Q ss_pred CCHHHHHHHhhHhCCCC------ceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcC-----cHHHH
Q 007280 168 PTPVQRHAIPISIGGRD------LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP-----TRELS 236 (609)
Q Consensus 168 pt~iQ~~~i~~i~~~~d------~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~P-----tr~La 236 (609)
.+..|-..+..++..++ +++.+.+|+|||. ++..+++..... .+.+++ .+.|.
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~-----~~r~~l~~~n~~-----------~vw~n~~ecft~~~ll 73 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTY-----LVRQLLRKLNLE-----------NVWLNCVECFTYAILL 73 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhH-----HHHHHHhhcCCc-----------ceeeehHHhccHHHHH
Confidence 46678888888776655 3889999999998 445555443211 344444 34444
Q ss_pred HHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccc--ccccceEEEEeccchhhhhcC-
Q 007280 237 SQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEADRMLDMG- 313 (609)
Q Consensus 237 ~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~--~~l~~i~~lVlDEah~~l~~g- 313 (609)
.+|..... .+... |........ +--.++..+.+.. ......-+||||-||.+-|++
T Consensus 74 e~IL~~~~-~~d~d---------g~~~~~~~e-----------n~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a 132 (438)
T KOG2543|consen 74 EKILNKSQ-LADKD---------GDKVEGDAE-----------NFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDA 132 (438)
T ss_pred HHHHHHhc-cCCCc---------hhhhhhHHH-----------HHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccch
Confidence 44432221 01110 100000000 0111233333311 122345689999999998887
Q ss_pred -CHHHHHHHHHHcCCCCCCCceEEEEEeeccHH
Q 007280 314 -FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (609)
Q Consensus 314 -f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~ 345 (609)
..+.+.++-+.+. .+.-.|.||++....
T Consensus 133 ~ll~~l~~L~el~~----~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 133 ILLQCLFRLYELLN----EPTIVIILSAPSCEK 161 (438)
T ss_pred HHHHHHHHHHHHhC----CCceEEEEeccccHH
Confidence 2344444445453 234578889987654
No 378
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.45 E-value=0.38 Score=55.43 Aligned_cols=61 Identities=23% Similarity=0.227 Sum_probs=51.3
Q ss_pred CceEEEEecchhhHHHHHHHHHhC----C-CCcEE-ecCccCHHHHHHHHHhhhcCCCcEEEEcccc
Q 007280 404 QALTLVFVETKKGADALEHWLYMN----G-FPATT-IHGDRTQQERELALRSFKSGKTPILVATDVA 464 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~----~-~~~~~-ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~ 464 (609)
+.++++.+||..-+.+.++.|... + +.+.. +|+.|+..++++++++|.+|..+|||+|...
T Consensus 125 gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 125 GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 678999999998888888887654 2 44433 9999999999999999999999999999654
No 379
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.40 E-value=1.3 Score=46.50 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=30.3
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHH
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~ 346 (609)
.+...+|+|||.|- -|.+=...+..++..+- .....+|+.|-+.|.++
T Consensus 125 ~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~---~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 125 AKESRLLCFDEFQV-TDIADAMILKRLFEALF---KRGVVLVATSNRPPEDL 172 (362)
T ss_pred HhcCCEEEEeeeec-cchhHHHHHHHHHHHHH---HCCCEEEecCCCChHHH
Confidence 34466899999993 44443445566666652 23456777788777653
No 380
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.40 E-value=1.3 Score=48.82 Aligned_cols=40 Identities=13% Similarity=0.365 Sum_probs=24.9
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEE
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~S 339 (609)
+...+++||||||+|... ....++..+..+ +....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~----A~NALLK~LEEp-p~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE----AFNALLKTLEEP-PSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH----HHHHHHHHHhhc-CCceEEEEEE
Confidence 467899999999988643 334445555443 4445555544
No 381
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.40 E-value=0.62 Score=48.08 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=18.4
Q ss_pred CCC-ceeeccCCCCchHHhHHHHHHHHH
Q 007280 182 GRD-LMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 182 ~~d-~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
..+ +++.+|.|+|||.++.. +...+.
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~-lA~~l~ 49 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALA-LAKELL 49 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHH-HHHHHh
Confidence 345 89999999999996443 334444
No 382
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.39 E-value=0.72 Score=52.97 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=14.0
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
.++++.+|+|+|||..
T Consensus 53 ~slLL~GPpGtGKTTL 68 (725)
T PRK13341 53 GSLILYGPPGVGKTTL 68 (725)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3689999999999984
No 383
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.35 E-value=0.56 Score=52.20 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=14.8
Q ss_pred CceeeccCCCCchHHhHH
Q 007280 184 DLMACAQTGSGKTAAFCF 201 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~ll 201 (609)
-+|+++|.|+|||..+.+
T Consensus 40 A~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999986543
No 384
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.30 E-value=0.74 Score=51.74 Aligned_cols=70 Identities=21% Similarity=0.394 Sum_probs=53.2
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh---c-CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~---~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+||.|+|+..+.++++.+.+. ++++..++++.+..+....+. + ..+||||| +.+.++ +++..+++
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~arG-IDip~V~~ 328 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAARG-LHIDGVKY 328 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhcC-CCccCCCE
Confidence 3899999999999998888764 678999999987665544432 2 57999999 555544 56778888
Q ss_pred EEec
Q 007280 301 LALD 304 (609)
Q Consensus 301 lVlD 304 (609)
||.-
T Consensus 329 VIny 332 (572)
T PRK04537 329 VYNY 332 (572)
T ss_pred EEEc
Confidence 8754
No 385
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=0.96 Score=48.01 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=36.0
Q ss_pred cceEEEEeccchhhhhcC--------CHHHHHHHHHHcCCCCCCCceEEEEEee-ccHHHHHHHHHhhcC
Q 007280 296 QMIRYLALDEADRMLDMG--------FEPQIRKIVQQMDMPPPGMRQTMLFSAT-FPKEIQRLASDFLAN 356 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~g--------f~~~i~~i~~~l~~~~~~~~q~il~SAT-~~~~~~~l~~~~l~~ 356 (609)
....++++||+|.++..- .......++.........+-+++++.|| .|.++.+-+...+..
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~k 313 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVK 313 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhc
Confidence 346778899999987422 2233344444443333445578999999 466666555543333
No 386
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.26 E-value=1 Score=44.21 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=15.3
Q ss_pred CCCceeeccCCCCchHHhH
Q 007280 182 GRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~l 200 (609)
+.-+++.+++|+|||...+
T Consensus 25 g~~~~i~G~~GsGKt~l~~ 43 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQ 43 (234)
T ss_pred CcEEEEECCCCCChHHHHH
Confidence 4568899999999998433
No 387
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.25 E-value=0.6 Score=51.56 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=14.4
Q ss_pred CCCceeeccCCCCchH
Q 007280 182 GRDLMACAQTGSGKTA 197 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~ 197 (609)
.+.+++.+|+|+|||+
T Consensus 88 ~~giLL~GppGtGKT~ 103 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTL 103 (495)
T ss_pred CCcEEEECCCCCCHHH
Confidence 3579999999999998
No 388
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.23 E-value=0.26 Score=46.38 Aligned_cols=47 Identities=21% Similarity=0.437 Sum_probs=28.2
Q ss_pred HhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHH
Q 007280 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (609)
Q Consensus 179 i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi 239 (609)
+.+++++++.+++|+|||..+. .+...++..+. .++..+..+|...+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~-ai~~~~~~~g~-------------~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAV-AIANEAIRKGY-------------SVLFITASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHH-HHHHHHHHTT---------------EEEEEHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHH-HHHHHhccCCc-------------ceeEeecCceeccc
Confidence 3457889999999999998533 34555554332 23445566776665
No 389
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.20 E-value=0.3 Score=51.11 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=24.3
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEE
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~S 339 (609)
....++|||||||.|... ....+++.+..+ +....+|++|
T Consensus 139 ~g~~rVviIDeAd~l~~~----aanaLLk~LEEp-p~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN----AANAILKTLEEP-PARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHH----HHHHHHHHHhcC-CCCceEEEEE
Confidence 356789999999998543 334455555443 3444455554
No 390
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=2.1 Score=42.90 Aligned_cols=130 Identities=17% Similarity=0.232 Sum_probs=72.9
Q ss_pred hhHhCCC-----CceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCC
Q 007280 177 PISIGGR-----DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTG 251 (609)
Q Consensus 177 ~~i~~~~-----d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~ 251 (609)
|.+..++ .+++.+|.|+||+. |.-+++ .... ...+-+....|+..|.-+-.++.+.
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSY--LAKAVA---TEAn------------STFFSvSSSDLvSKWmGESEkLVkn-- 216 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSY--LAKAVA---TEAN------------STFFSVSSSDLVSKWMGESEKLVKN-- 216 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHH--HHHHHH---hhcC------------CceEEeehHHHHHHHhccHHHHHHH--
Confidence 4555553 48999999999996 322222 2111 1577777788888876665554211
Q ss_pred eEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcC---CHHHHHHHH----HH
Q 007280 252 VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG---FEPQIRKIV----QQ 324 (609)
Q Consensus 252 i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~g---f~~~i~~i~----~~ 324 (609)
|..+... ..-+.|.+||+|.|.... -.+..++|. -+
T Consensus 217 --------------------------------LFemARe-----~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQ 259 (439)
T KOG0739|consen 217 --------------------------------LFEMARE-----NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQ 259 (439)
T ss_pred --------------------------------HHHHHHh-----cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHh
Confidence 2222221 234679999999776432 123333333 23
Q ss_pred cCCCCCCCceEEEEEeec-cHHHHHHHHHhhcCcEEEEe
Q 007280 325 MDMPPPGMRQTMLFSATF-PKEIQRLASDFLANYIFLAV 362 (609)
Q Consensus 325 l~~~~~~~~q~il~SAT~-~~~~~~l~~~~l~~~~~~~~ 362 (609)
+.-....+--++.+.||- |=.+..-++.-+...|+|.+
T Consensus 260 MqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPL 298 (439)
T KOG0739|consen 260 MQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPL 298 (439)
T ss_pred hhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccC
Confidence 333333445688899994 44444555555556565544
No 391
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.12 E-value=0.72 Score=48.58 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=25.2
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
....++|||||+|.|.. .....+++.+..+ +....+|++|..
T Consensus 139 ~~~~kVviIDead~m~~----~aanaLLK~LEep-p~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA----NAANALLKVLEEP-PARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCH----HHHHHHHHHHhcC-CCCeEEEEEECC
Confidence 35678999999998753 4444555555433 334445554443
No 392
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.90 E-value=2.4 Score=43.77 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=34.3
Q ss_pred cceEEEEeccchhhh-hcCCHHHHHHHHHHcC--CCCCCCceEEEEEeeccHHHHHHHHHhh
Q 007280 296 QMIRYLALDEADRML-DMGFEPQIRKIVQQMD--MPPPGMRQTMLFSATFPKEIQRLASDFL 354 (609)
Q Consensus 296 ~~i~~lVlDEah~~l-~~gf~~~i~~i~~~l~--~~~~~~~q~il~SAT~~~~~~~l~~~~l 354 (609)
..+++||+|=+-++- +.....++..+...+. .+..+...++.++||...+....+..|.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 557889999887754 2222345555554332 1223445678899997655444455554
No 393
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.80 E-value=0.61 Score=48.35 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=25.3
Q ss_pred CCHHHHHHHhhHhC--CC---CceeeccCCCCchHHhHH
Q 007280 168 PTPVQRHAIPISIG--GR---DLMACAQTGSGKTAAFCF 201 (609)
Q Consensus 168 pt~iQ~~~i~~i~~--~~---d~ii~a~TGsGKT~a~ll 201 (609)
.+|+|...+..+.. ++ -+++.+|.|+|||..+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~ 40 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF 40 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH
Confidence 36888888877663 22 378999999999985543
No 394
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.78 E-value=0.35 Score=50.90 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=19.1
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHh
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMR 209 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~ 209 (609)
...++++++||||||.. +-.++..+..
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 44688999999999983 4445555543
No 395
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.76 E-value=1.5 Score=49.67 Aligned_cols=42 Identities=12% Similarity=0.335 Sum_probs=26.2
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~ 342 (609)
+...+++||||+|+|.. .....++..+..++ ... +++|.+|-
T Consensus 119 ~~~~KVvIIdea~~Ls~----~a~naLLK~LEepp-~~t-ifIL~tt~ 160 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ----AAFNAFLKTLEEPP-SYA-IFILATTE 160 (614)
T ss_pred cCCcEEEEEECcccCCH----HHHHHHHHHHhCCC-CCe-EEEEEeCC
Confidence 56789999999999854 34455556655432 333 44555553
No 396
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.73 E-value=0.83 Score=55.25 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=62.0
Q ss_pred CceEEEEecchhhHHHHHHHHHhC----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEc-cccccCCCCCCccEEE
Q 007280 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVAT-DVAARGLDIPHVAHVV 477 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT-~v~~~GlDip~v~~VI 477 (609)
..+++|.+||+.-|..+++.+... ++.+..+++..+..++.++++.+++|..+|||+| ..+...+.+.++.+||
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 567999999999999988877642 4567789999999999999999999999999999 4555567777888877
No 397
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.71 E-value=1.6 Score=44.93 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=13.5
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
.+++.++.|+|||.+
T Consensus 40 ~~ll~G~~G~GKt~~ 54 (319)
T PRK00440 40 HLLFAGPPGTGKTTA 54 (319)
T ss_pred eEEEECCCCCCHHHH
Confidence 589999999999984
No 398
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=91.56 E-value=0.83 Score=47.52 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=26.1
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
....+++||||||+|.. .....+++.+..+ +....+|+ .++
T Consensus 108 ~~~~kvviI~~a~~~~~----~a~NaLLK~LEEP-p~~~~~Il-~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTA----SAANSLLKFLEEP-SGGTTAIL-LTE 148 (329)
T ss_pred ccCceEEEeehHhhhCH----HHHHHHHHHhcCC-CCCceEEE-EeC
Confidence 45678999999999864 3445666666554 34444444 444
No 399
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.53 E-value=0.062 Score=48.09 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=13.2
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
++|+.+++|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 478999999999983
No 400
>PRK04195 replication factor C large subunit; Provisional
Probab=91.51 E-value=0.79 Score=50.41 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.8
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
.+.+|+.+|+|+|||..
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999984
No 401
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.49 E-value=0.31 Score=55.28 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=35.8
Q ss_pred eEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeecc
Q 007280 298 IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 298 i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~ 343 (609)
-=|||||.-|++.+.-....++.++++. |++.+.|+.|=+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~----P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHA----PENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhC----CCCeEEEEEeccCC
Confidence 3599999999999888888888888888 88888888887755
No 402
>PRK12608 transcription termination factor Rho; Provisional
Probab=91.45 E-value=1.4 Score=46.18 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=22.4
Q ss_pred HHHHHHHhhHh---CCCCceeeccCCCCchHH
Q 007280 170 PVQRHAIPISI---GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 170 ~iQ~~~i~~i~---~~~d~ii~a~TGsGKT~a 198 (609)
++-.++|..+. .|+.++|.++.|+|||+.
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTL 149 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVL 149 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHH
Confidence 34445666555 688999999999999983
No 403
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.41 E-value=1.3 Score=47.18 Aligned_cols=45 Identities=20% Similarity=0.430 Sum_probs=26.1
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHH
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~ 345 (609)
....+++||||+|+|... ....+++.+..+ +.. .++++.+|-+..
T Consensus 115 ~~~~kViiIDead~m~~~----aanaLLk~LEep-~~~-~~fIL~a~~~~~ 159 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER----AANALLKAVEEP-PPR-TVWLLCAPSPED 159 (394)
T ss_pred cCCcEEEEEechhhcCHH----HHHHHHHHhhcC-CCC-CeEEEEECChHH
Confidence 356789999999998643 234445555443 333 345555554443
No 404
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.33 E-value=0.34 Score=49.23 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.2
Q ss_pred CCceeeccCCCCchHHh
Q 007280 183 RDLMACAQTGSGKTAAF 199 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~ 199 (609)
+.+++++|||+|||...
T Consensus 195 ~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTL 211 (282)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45779999999999853
No 405
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=91.29 E-value=2.8 Score=38.97 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=32.8
Q ss_pred ccceEEEEeccchhhhhcCCH--HHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHH
Q 007280 295 LQMIRYLALDEADRMLDMGFE--PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~--~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~ 351 (609)
-..+++|||||+=..++.++. .++..++... +...-+|+.--.+|+++.+.+.
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~r----p~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENR----PESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-----TT-EEEEE-SS--HHHHHH-S
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcC----CCCeEEEEECCCCCHHHHHhCC
Confidence 456899999999998888853 4555666543 5566677777777887776654
No 406
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.23 E-value=1.1 Score=47.66 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHCCCCC--CCHHHH-----HHHhhHhCCCCceeeccCCCCchHHhH
Q 007280 150 IDLGEALNLNIRRCKYVK--PTPVQR-----HAIPISIGGRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 150 ~~l~~~l~~~i~~~~~~~--pt~iQ~-----~~i~~i~~~~d~ii~a~TGsGKT~a~l 200 (609)
+...+++.--|+.+||.. ++.-|+ .+++.+.++.|++..+|+|+|||..|.
T Consensus 170 FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 170 FTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred cCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 345667777778888853 333222 223666788999999999999997554
No 407
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.20 E-value=0.76 Score=48.52 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=20.5
Q ss_pred HHHHHHhhHh---CCCCceeeccCCCCchHH
Q 007280 171 VQRHAIPISI---GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 171 iQ~~~i~~i~---~~~d~ii~a~TGsGKT~a 198 (609)
+-.++|..++ .|+.+++.+++|+|||..
T Consensus 154 ~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 154 LSTRVLDLFAPIGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred cceeeeeeEEEeCCCCEEEEECCCCCChhHH
Confidence 3344444333 688899999999999983
No 408
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=91.18 E-value=8.2 Score=40.01 Aligned_cols=225 Identities=16% Similarity=0.135 Sum_probs=110.7
Q ss_pred CCCchHHhHHHHHHHHHhhhcc----cCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHH
Q 007280 192 GSGKTAAFCFPIISGIMREQYV----QRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL 267 (609)
Q Consensus 192 GsGKT~a~llpil~~l~~~~~~----~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 267 (609)
|+|||-. .+.++..+.+.+.. .+.-+.+..+ ..+++.+.. -+.++=+|-..++.... +.++++......-.
T Consensus 47 GTGKTP~-v~~L~~~L~~~G~~~~IlSRGYg~~~~~-~~~~v~~~~-~~~~~GDEp~lla~~~~--~~V~V~~dR~~~~~ 121 (326)
T PF02606_consen 47 GTGKTPL-VIWLARLLQARGYRPAILSRGYGRKSKG-EPILVSDGS-DAEEVGDEPLLLARKLP--VPVIVGPDRVAAAR 121 (326)
T ss_pred CCCchHH-HHHHHHHHHhcCCceEEEcCCCCCCCCC-CeEEEeCCC-ChhhhcCHHHHHHHhcC--CcEEEeCcHHHHHH
Confidence 8999974 44455555544221 1222222221 256666665 66777677666666655 44444544333333
Q ss_pred HHHhc-CCCEEEeChHHHHHHHHcccccccceEEEEeccchh-----hhhcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 268 RELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-----MLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 268 ~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~-----~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
..+.. +++|+|+- |-++...+ ..++++|++|-.+- ++-.| -+++-...+.. .-+|+++..
T Consensus 122 ~~~~~~~~dviilD-----DGfQh~~L-~rDl~Ivl~D~~~~~gng~lLPaG---~LREp~~~l~r-----AD~vi~~~~ 187 (326)
T PF02606_consen 122 AALKEFPADVIILD-----DGFQHRRL-KRDLDIVLVDADRPFGNGFLLPAG---PLREPLSALKR-----ADAVIVTGC 187 (326)
T ss_pred HHHHHCCCCEEEEc-----CCcccccc-cCCcEEEEEeCCCCCcCCccCCCC---cccCChhHhCc-----ccEEEEcCC
Confidence 33332 48999976 33443333 46789999997442 22222 11222222211 124444433
Q ss_pred ccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHH
Q 007280 342 FPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALE 421 (609)
Q Consensus 342 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~ 421 (609)
...............+++... +....- ..+...-.. .-+..++++||- ...-+.+.
T Consensus 188 ~~~~~~~~~~~~~~~p~~~~~-------------~~~~~~----~~~~~~~~~------~l~~~~v~a~sG-Ig~P~~F~ 243 (326)
T PF02606_consen 188 DASDPAIEKAIRPGKPIFSAR-------------LKPEGL----RNLNTGSIE------PLKGKPVLAFSG-IGNPERFF 243 (326)
T ss_pred CcchhHHHHhhhcCCceEEEE-------------EEeccc----ccccccchh------hccCCeeEEEEE-cCChHHHH
Confidence 322211111101111111110 000000 000000000 012556777764 55567778
Q ss_pred HHHHhCCCCcEEe-----cCccCHHHHHHHHHhhhcCCCcEEEEc
Q 007280 422 HWLYMNGFPATTI-----HGDRTQQERELALRSFKSGKTPILVAT 461 (609)
Q Consensus 422 ~~L~~~~~~~~~i-----hg~~~~~~R~~~~~~F~~g~~~ILVaT 461 (609)
+.|...++.+... |-..+..+-+.+....+... +||+|
T Consensus 244 ~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~--~iltT 286 (326)
T PF02606_consen 244 DTLESLGIEVVGTLAFPDHHRYTEQDLEKLEAEAKAAG--IILTT 286 (326)
T ss_pred HHHHHcCCeEEEeeECCCCCCCCHHHHHHHHHhhcccc--eEEec
Confidence 8888888877632 66788888888888777655 88888
No 409
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=91.07 E-value=0.93 Score=48.86 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=14.9
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
.+.+++.+|+|+|||+.
T Consensus 217 p~gVLL~GPPGTGKT~L 233 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLL 233 (438)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 46799999999999983
No 410
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=91.04 E-value=0.25 Score=46.50 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=29.4
Q ss_pred cceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
...+++++||...-+|......+..++..+.. ...++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~---~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK---HTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEECC
Confidence 45689999999998887766777677666521 22455555543
No 411
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.04 E-value=0.5 Score=45.50 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=15.9
Q ss_pred CCCceeeccCCCCchHHhHH
Q 007280 182 GRDLMACAQTGSGKTAAFCF 201 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~ll 201 (609)
+.-+.+.+++|+|||...+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~ 31 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMI 31 (209)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45578999999999985443
No 412
>PRK09087 hypothetical protein; Validated
Probab=90.94 E-value=0.59 Score=45.77 Aligned_cols=42 Identities=10% Similarity=0.092 Sum_probs=25.3
Q ss_pred EEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHH
Q 007280 299 RYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (609)
Q Consensus 299 ~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~ 345 (609)
++|+||++|.+. .-...+.++++.+.. ...++|+.|.|.|.+
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~---~g~~ilits~~~p~~ 130 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQ---AGTSLLMTSRLWPSS 130 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHh---CCCeEEEECCCChHH
Confidence 379999999753 235667777777632 234444445444544
No 413
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=90.91 E-value=1.4 Score=46.45 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=14.7
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
.+.+++.+|+|+|||+.
T Consensus 156 p~gvLL~GppGtGKT~l 172 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLL 172 (364)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45699999999999983
No 414
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=90.77 E-value=0.61 Score=44.96 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=20.5
Q ss_pred cceEEEEeccchhhhhcCCHHHHHHHHHHc
Q 007280 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~gf~~~i~~i~~~l 325 (609)
.+.+.|||||||.|-+- -...+++.++..
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiy 140 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIY 140 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHH
Confidence 56789999999998753 245566666554
No 415
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.75 E-value=1.4 Score=48.39 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=19.8
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCC
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMP 328 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~ 328 (609)
....+++||||||.|... ....++..+..+
T Consensus 117 ~~~~KVvIIDEad~Lt~~----a~naLLk~LEep 146 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKE----AFNALLKTLEEP 146 (486)
T ss_pred cCCeeEEEEEChhhcCHH----HHHHHHHHHhcC
Confidence 456789999999987543 334455555443
No 416
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=90.72 E-value=0.98 Score=47.38 Aligned_cols=29 Identities=7% Similarity=0.202 Sum_probs=19.4
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCC
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM 327 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~ 327 (609)
+...++|||||+|.|.. .....++..+..
T Consensus 115 ~~~~~vviidea~~l~~----~~~~~Ll~~le~ 143 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSK----SAFNALLKTLEE 143 (355)
T ss_pred cCCceEEEEeChhhcCH----HHHHHHHHHHhC
Confidence 45568999999998754 334455555543
No 417
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.68 E-value=1.4 Score=48.00 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=23.2
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEE
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTML 337 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il 337 (609)
....++|||||+|.|.. .....++..+..+ +....+|+
T Consensus 119 ~~~~kvvIIdead~lt~----~~~n~LLk~lEep-~~~~~~Il 156 (451)
T PRK06305 119 KSRYKIYIIDEVHMLTK----EAFNSLLKTLEEP-PQHVKFFL 156 (451)
T ss_pred cCCCEEEEEecHHhhCH----HHHHHHHHHhhcC-CCCceEEE
Confidence 35678999999998854 2344555555543 33333443
No 418
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=90.66 E-value=0.17 Score=53.85 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=35.4
Q ss_pred CceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
+++++|+||||||.++++|.+... . ..+||+=|.-|+........++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~---~------------~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW---P------------GSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC---C------------CCEEEEccchhHHHHHHHHHHH
Confidence 578999999999999988876421 1 1189999999998776555444
No 419
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.58 E-value=3.4 Score=44.45 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.1
Q ss_pred CceeeccCCCCchHHhH
Q 007280 184 DLMACAQTGSGKTAAFC 200 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~l 200 (609)
-+++++++|+|||++..
T Consensus 101 vi~~vG~~GsGKTTtaa 117 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCG 117 (428)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47789999999998643
No 420
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=90.53 E-value=0.5 Score=47.47 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=6.6
Q ss_pred ccchHHHHHHHh
Q 007280 528 QEVPAWLNRYAS 539 (609)
Q Consensus 528 q~vp~~l~~~a~ 539 (609)
-|.|+|-+.-+.
T Consensus 317 pempswqqqq~~ 328 (465)
T KOG3973|consen 317 PEMPSWQQQQHT 328 (465)
T ss_pred CCCCcHHHhcCC
Confidence 346666655543
No 421
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=90.46 E-value=0.45 Score=45.32 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=25.3
Q ss_pred ceEEEEeccchhhhhcCCH--HHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHH
Q 007280 297 MIRYLALDEADRMLDMGFE--PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASD 352 (609)
Q Consensus 297 ~i~~lVlDEah~~l~~gf~--~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~ 352 (609)
.-.+|||||||..+...-. .....+++.+........-++++|-.+ ..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~-~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP-SQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G-GGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH-HHHhHHHHH
Confidence 4478999999987754322 223344444433323345566666654 444444443
No 422
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=90.36 E-value=0.29 Score=53.62 Aligned_cols=49 Identities=27% Similarity=0.322 Sum_probs=37.8
Q ss_pred CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.++++.|+||||||..+++|.+. .... -+||+-|--||........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll---~~~~------------s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL---NYPG------------SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH---hccC------------CEEEEECCCcHHHHHHHHHHHC
Confidence 47999999999999999999763 2211 1899999999988776655553
No 423
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.36 E-value=0.37 Score=50.64 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.2
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
.+.-+++++|||||||..
T Consensus 133 ~~glilI~GpTGSGKTTt 150 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL 150 (358)
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 456689999999999983
No 424
>PRK10867 signal recognition particle protein; Provisional
Probab=90.36 E-value=4.2 Score=43.80 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.9
Q ss_pred CceeeccCCCCchHHhH
Q 007280 184 DLMACAQTGSGKTAAFC 200 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~l 200 (609)
-+++++++|+|||+...
T Consensus 102 vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAG 118 (433)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 36789999999998543
No 425
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.33 E-value=2.7 Score=48.61 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=15.0
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
..++|+.+|+|+|||..
T Consensus 207 ~~n~LLvGppGvGKT~l 223 (758)
T PRK11034 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_pred CCCeEEECCCCCCHHHH
Confidence 45899999999999984
No 426
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.32 E-value=1.6 Score=47.83 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=38.1
Q ss_pred CCCCCcccCccccCC-CCHHHHHHHHHC-CCCCCCHHHHHHHhhHhCCCCceeeccCCCCchH
Q 007280 137 GENVPPAVNTFAEID-LGEALNLNIRRC-KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 137 ~~~~p~~~~~f~~~~-l~~~l~~~i~~~-~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~ 197 (609)
+...|.+..+|.+++ ++..+.+.+.-. .+..|..++.-.+ .--+.+|+.+|.|||||.
T Consensus 179 ~~~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~ 238 (802)
T KOG0733|consen 179 GLEFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTS 238 (802)
T ss_pred ccCCCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHH
Confidence 344555566888884 665554433321 2556777776544 235789999999999997
No 427
>PHA00012 I assembly protein
Probab=90.29 E-value=4.5 Score=41.44 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=31.5
Q ss_pred cceEEEEeccchhhhhcC-CH----HHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCc
Q 007280 296 QMIRYLALDEADRMLDMG-FE----PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANY 357 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~g-f~----~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~ 357 (609)
..-.++||||||..+..- +. +.+...+...+ ....-++++|-. +..+...++..+...
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hR---h~G~DvilITQ~-ps~VDs~IR~ll~eH 142 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHAR---KLGWDIIFIIQD-ISIMDKQAREALAEH 142 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhc---cCCceEEEEcCC-HHHHhHHHHHhhhhe
Confidence 456799999999987421 11 22444343332 222345666555 345566665554443
No 428
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.24 E-value=0.46 Score=55.87 Aligned_cols=97 Identities=22% Similarity=0.220 Sum_probs=76.4
Q ss_pred CCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCC
Q 007280 403 KQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLP 482 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p 482 (609)
...++|||+......+.++..+...++.....-+ .++-...+..|++ -...|+-+...+-|+|+-+..||+..++-
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 4688999999888888888877666554433222 3556667778877 22356677888999999999999999999
Q ss_pred CCHHHHHHHhhhcccCCCCce
Q 007280 483 NDIDDYVHRIGRTGRAGKSGL 503 (609)
Q Consensus 483 ~s~~~y~QriGRagR~g~~G~ 503 (609)
.++..-.|.+||+.|.||+-.
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred cCchHHHhhhhhhhhcccccc
Confidence 999999999999999998543
No 429
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=90.19 E-value=1.5 Score=47.83 Aligned_cols=68 Identities=19% Similarity=0.375 Sum_probs=50.5
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH---hc-CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+||.|+++.-+..+++.+.+ .++++..++++.+..+....+ .. ..+||||| +.+.++ +++..+++
T Consensus 247 ~~lVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~rG-iDip~v~~ 316 (456)
T PRK10590 247 QVLVFTRTKHGANHLAEQLNK----DGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAARG-LDIEELPH 316 (456)
T ss_pred cEEEEcCcHHHHHHHHHHHHH----CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHhcC-CCcccCCE
Confidence 389999999999998887766 368889999998765554433 33 57899999 555443 55777777
Q ss_pred EE
Q 007280 301 LA 302 (609)
Q Consensus 301 lV 302 (609)
||
T Consensus 317 VI 318 (456)
T PRK10590 317 VV 318 (456)
T ss_pred EE
Confidence 66
No 430
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.17 E-value=0.55 Score=48.81 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=17.5
Q ss_pred hHhCCCCceeeccCCCCchH
Q 007280 178 ISIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 178 ~i~~~~d~ii~a~TGsGKT~ 197 (609)
++..+++++++++||||||.
T Consensus 156 ~v~~~~nili~G~tgSGKTT 175 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTT 175 (332)
T ss_pred HHHcCCcEEEECCCCCCHHH
Confidence 44568899999999999998
No 431
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.17 E-value=4.2 Score=41.67 Aligned_cols=134 Identities=21% Similarity=0.303 Sum_probs=71.8
Q ss_pred ceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcC-c-HHHHHHHHHHHHHhhccCCeEEEEE-ECCc
Q 007280 185 LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP-T-RELSSQIHVEAKKFSYQTGVKVVVA-YGGA 261 (609)
Q Consensus 185 ~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~P-t-r~La~Qi~~~~~~~~~~~~i~~~~~-~gg~ 261 (609)
+++++-.|+|||+. +.=|++.+..... .+|+.+- | |+=|.. .++.++...++.++.- +|+.
T Consensus 142 il~vGVNG~GKTTT--IaKLA~~l~~~g~-----------~VllaA~DTFRAaAiE---QL~~w~er~gv~vI~~~~G~D 205 (340)
T COG0552 142 ILFVGVNGVGKTTT--IAKLAKYLKQQGK-----------SVLLAAGDTFRAAAIE---QLEVWGERLGVPVISGKEGAD 205 (340)
T ss_pred EEEEecCCCchHhH--HHHHHHHHHHCCC-----------eEEEEecchHHHHHHH---HHHHHHHHhCCeEEccCCCCC
Confidence 67899999999995 3334444443221 1444443 2 333322 2444444567777652 3333
Q ss_pred ChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhh-cCCHHHHHHHHHHcCCCCC--CCceEEEE
Q 007280 262 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPP--GMRQTMLF 338 (609)
Q Consensus 262 ~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~-~gf~~~i~~i~~~l~~~~~--~~~q~il~ 338 (609)
+..- ..+-++..+ -..+++|++|=|-||-. .....++.+|..-+....+ ++.-++.+
T Consensus 206 pAaV------------------afDAi~~Ak--ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvl 265 (340)
T COG0552 206 PAAV------------------AFDAIQAAK--ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVL 265 (340)
T ss_pred cHHH------------------HHHHHHHHH--HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEE
Confidence 3211 123333221 34567788888877653 3355677777766643322 22334455
Q ss_pred EeeccHHHHHHHHHhh
Q 007280 339 SATFPKEIQRLASDFL 354 (609)
Q Consensus 339 SAT~~~~~~~l~~~~l 354 (609)
-||.-.+-..-++.|-
T Consensus 266 DAttGqnal~QAk~F~ 281 (340)
T COG0552 266 DATTGQNALSQAKIFN 281 (340)
T ss_pred EcccChhHHHHHHHHH
Confidence 8998776666666654
No 432
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=90.10 E-value=1.2 Score=46.94 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=21.6
Q ss_pred CHHHHHHHhhHh---CCCCceeeccCCCCchH
Q 007280 169 TPVQRHAIPISI---GGRDLMACAQTGSGKTA 197 (609)
Q Consensus 169 t~iQ~~~i~~i~---~~~d~ii~a~TGsGKT~ 197 (609)
.++=.++|..+. .|+..+|.|+.|+|||.
T Consensus 153 ~~~~~rvID~l~PIGkGQR~lIvgppGvGKTT 184 (416)
T PRK09376 153 EDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTV 184 (416)
T ss_pred cccceeeeeeecccccCceEEEeCCCCCChhH
Confidence 444445555444 68889999999999997
No 433
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.04 E-value=1.3 Score=44.45 Aligned_cols=21 Identities=10% Similarity=-0.018 Sum_probs=16.4
Q ss_pred CCCCceeeccCCCCchHHhHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCF 201 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~ll 201 (609)
.+.-++|.+++|+|||...+-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~q 55 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQ 55 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 456688999999999985433
No 434
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=89.93 E-value=0.96 Score=49.62 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=30.4
Q ss_pred ccCccccCC-CCHHHHHHHHH--CCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHH
Q 007280 143 AVNTFAEID-LGEALNLNIRR--CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 143 ~~~~f~~~~-l~~~l~~~i~~--~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a 198 (609)
|..+|++++ +.+.+.+-... ..+..|-.++...++ ..+.+++.+|+|+|||+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~---~p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLK---PPKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC---CCcceEEECCCCCcHHHH
Confidence 345688875 55544332222 123333333333332 246799999999999983
No 435
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.88 E-value=1.4 Score=47.47 Aligned_cols=70 Identities=30% Similarity=0.377 Sum_probs=52.0
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh---c-CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~---~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+||.|+++..|..+++.+.. .++++..++|+.+..+....+. . .++||||| +.+.++ +++..+++
T Consensus 257 ~~lVF~~t~~~~~~l~~~L~~----~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT-----dv~~rG-iDip~v~~ 326 (423)
T PRK04837 257 RAIIFANTKHRCEEIWGHLAA----DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVAT-----DVAARG-LHIPAVTH 326 (423)
T ss_pred eEEEEECCHHHHHHHHHHHHh----CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEe-----chhhcC-CCccccCE
Confidence 389999999999998877765 3788999999887665544332 2 58999999 455443 56788887
Q ss_pred EEec
Q 007280 301 LALD 304 (609)
Q Consensus 301 lVlD 304 (609)
||.-
T Consensus 327 VI~~ 330 (423)
T PRK04837 327 VFNY 330 (423)
T ss_pred EEEe
Confidence 7654
No 436
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=89.81 E-value=1.1 Score=48.32 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=19.1
Q ss_pred HhCCCCceeeccCCCCchHHhHHHHHHHH
Q 007280 179 SIGGRDLMACAQTGSGKTAAFCFPIISGI 207 (609)
Q Consensus 179 i~~~~d~ii~a~TGsGKT~a~llpil~~l 207 (609)
+..+.-+++.|.+|+|||.. ++-+..++
T Consensus 191 ~~~g~liviag~pg~GKT~~-al~ia~~~ 218 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTL-ALNIAENV 218 (421)
T ss_pred CCCCceEEEEeCCCCCHHHH-HHHHHHHH
Confidence 33455678999999999984 44444344
No 437
>PF05729 NACHT: NACHT domain
Probab=89.71 E-value=1.4 Score=40.17 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=13.1
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
-++|.++.|+|||..
T Consensus 2 ~l~I~G~~G~GKStl 16 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL 16 (166)
T ss_pred EEEEECCCCCChHHH
Confidence 478999999999984
No 438
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.71 E-value=2.8 Score=49.96 Aligned_cols=42 Identities=17% Similarity=0.325 Sum_probs=30.5
Q ss_pred eEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeecc
Q 007280 298 IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 298 i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~ 343 (609)
--+||||++|.+.+......+..++... +....+|+.|-+.|
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~----~~~~~lv~~sR~~~ 163 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQ----PENLTLVVLSRNLP 163 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhC----CCCeEEEEEeCCCC
Confidence 3589999999876554555677777766 66778888887743
No 439
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.67 E-value=0.37 Score=46.78 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=14.2
Q ss_pred CCCceeeccCCCCchH
Q 007280 182 GRDLMACAQTGSGKTA 197 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~ 197 (609)
.+.+++.+|-|+|||.
T Consensus 20 ~~~~~l~G~rg~GKTs 35 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTS 35 (234)
T ss_dssp SSEEEEEESTTSSHHH
T ss_pred CcEEEEEcCCcCCHHH
Confidence 4678899999999998
No 440
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.66 E-value=1.4 Score=51.19 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=14.1
Q ss_pred CCCceeeccCCCCchH
Q 007280 182 GRDLMACAQTGSGKTA 197 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~ 197 (609)
.+.+++.+|+|||||+
T Consensus 487 ~~giLL~GppGtGKT~ 502 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTL 502 (733)
T ss_pred CceEEEECCCCCCHHH
Confidence 3568999999999998
No 441
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=89.63 E-value=1.7 Score=48.33 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=63.7
Q ss_pred CceEEEEecchh----hHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEc-cccccCCCCCCccEEE
Q 007280 404 QALTLVFVETKK----GADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVAT-DVAARGLDIPHVAHVV 477 (609)
Q Consensus 404 ~~k~lVF~~t~~----~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT-~v~~~GlDip~v~~VI 477 (609)
+.++.+-++|-- +.+.+.++|...++.+..+.|.+...+|.++++...+|.++|+|.| ..+...+++.++.+||
T Consensus 311 G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 311 GYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred CCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 667889999954 4555566666778999999999999999999999999999999999 5567899999999988
No 442
>PRK04328 hypothetical protein; Provisional
Probab=89.63 E-value=2.1 Score=42.52 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=32.4
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhh
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~ 247 (609)
.+.-+++.+++|+|||...+-.+...+.+.. .+++++ +.+-..++.+.++.|.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge-------------~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-------------PGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------------cEEEEE-eeCCHHHHHHHHHHcC
Confidence 3566889999999999844333333332211 166665 5556666766676663
No 443
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.61 E-value=0.33 Score=54.41 Aligned_cols=56 Identities=25% Similarity=0.165 Sum_probs=42.3
Q ss_pred CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEE
Q 007280 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVA 257 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~ 257 (609)
++++++||||||||..+++|-+...- . .+||+=|--|+........+++ +.+|.++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~--~-------------S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vf 214 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE--D-------------SVVVHDIKLENYELTSGWREKQ----GQKVFVW 214 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC--C-------------CEEEEeCcHHHHHHHHHHHHHC----CCeEEEE
Confidence 57999999999999999999875421 0 1899999999998877666653 4445444
No 444
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.56 E-value=1.7 Score=48.17 Aligned_cols=68 Identities=25% Similarity=0.405 Sum_probs=52.2
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhc----CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER----GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~----~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+||.|.|+..+..++..+.+. ++++..++|+.+..+..+.+.. ..+||||| |...+ .+++..+++
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaT-----DvaaR-GiDi~~v~~ 344 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVAT-----DVAAR-GLDIPDVSH 344 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEe-----chhhc-cCCccccce
Confidence 3999999999999988777774 7999999999987766555532 58999999 55443 355677777
Q ss_pred EE
Q 007280 301 LA 302 (609)
Q Consensus 301 lV 302 (609)
||
T Consensus 345 Vi 346 (513)
T COG0513 345 VI 346 (513)
T ss_pred eE
Confidence 64
No 445
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.55 E-value=1.7 Score=42.39 Aligned_cols=51 Identities=20% Similarity=0.166 Sum_probs=31.2
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
+.-+++.+++|+|||...+- ++...++.+. .+++++- .+-..++.+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~-~~~~~~~~g~------------~~~y~s~-e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQ-FLYQGLKNGE------------KAMYISL-EEREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHHHhCCC------------eEEEEEC-CCCHHHHHHHHHHc
Confidence 55688999999999984333 2322222211 1666654 45567777777765
No 446
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=89.54 E-value=1.6 Score=43.42 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=16.3
Q ss_pred hCCCCceeeccCCCCchH
Q 007280 180 IGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~ 197 (609)
-.|+.+++.++.|+|||.
T Consensus 14 ~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 468889999999999997
No 447
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.47 E-value=0.53 Score=49.09 Aligned_cols=45 Identities=33% Similarity=0.442 Sum_probs=28.9
Q ss_pred hHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHH
Q 007280 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (609)
Q Consensus 178 ~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 236 (609)
++..+++++++++||||||.. +-.++..+ ... -+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i----~~~---------~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAI----PPQ---------ERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHccc----CCC---------CCEEEECCCcccc
Confidence 445688999999999999982 33232222 110 1277777887764
No 448
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=89.26 E-value=1.4 Score=45.29 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=13.4
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
.+|+++|.|+|||..
T Consensus 164 SmIlWGppG~GKTtl 178 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTL 178 (554)
T ss_pred ceEEecCCCCchHHH
Confidence 589999999999973
No 449
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=89.24 E-value=1.1 Score=47.92 Aligned_cols=69 Identities=28% Similarity=0.361 Sum_probs=52.0
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH---hc-CCCEEEeChHHHHHHHHcccccccceE
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~ 299 (609)
|.++|.+.+..=|..+++.+.+. +++++.++|+....+....| .. ..+|+||| |..-+ .+++.+++
T Consensus 518 ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaT-----DvAgR-GIDIpnVS 587 (673)
T KOG0333|consen 518 PPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVAT-----DVAGR-GIDIPNVS 587 (673)
T ss_pred CCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEe-----ccccc-CCCCCccc
Confidence 44899999999999988888774 79999999998866554443 33 57999999 43333 35678888
Q ss_pred EEE
Q 007280 300 YLA 302 (609)
Q Consensus 300 ~lV 302 (609)
+||
T Consensus 588 lVi 590 (673)
T KOG0333|consen 588 LVI 590 (673)
T ss_pred eee
Confidence 776
No 450
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.21 E-value=1.7 Score=47.23 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=73.6
Q ss_pred eeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHH
Q 007280 186 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQ 265 (609)
Q Consensus 186 ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~ 265 (609)
|-+-...+||+..-++++.+.+ ..... |-+||.+-+.+-|.|++.++..| .++++.+++|..+..+
T Consensus 361 V~QelvF~gse~~K~lA~rq~v-~~g~~----------PP~lIfVQs~eRak~L~~~L~~~---~~i~v~vIh~e~~~~q 426 (593)
T KOG0344|consen 361 VDQELVFCGSEKGKLLALRQLV-ASGFK----------PPVLIFVQSKERAKQLFEELEIY---DNINVDVIHGERSQKQ 426 (593)
T ss_pred hhhhheeeecchhHHHHHHHHH-hccCC----------CCeEEEEecHHHHHHHHHHhhhc---cCcceeeEecccchhH
Confidence 3344568899988777555444 33321 34888889999999999888733 5788999999876554
Q ss_pred HHHHHh---c-CCCEEEeChHHHHHHHHcccccccceEEEEeccch
Q 007280 266 QLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRYLALDEAD 307 (609)
Q Consensus 266 ~~~~l~---~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah 307 (609)
....++ . ...|+||| ++|.++ +++..+.+||-+..-
T Consensus 427 rde~~~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 427 RDETMERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFP 466 (593)
T ss_pred HHHHHHHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCC
Confidence 433333 2 46899999 888877 679999999987654
No 451
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.14 E-value=5.8 Score=39.11 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=32.0
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhh-HhCCCCceeeccCCCCchHHh
Q 007280 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAF 199 (609)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~-i~~~~d~ii~a~TGsGKT~a~ 199 (609)
+|-.++.+.+=+++-++.|++.- +.|.-.-..-+.. |-.-+.+++-+|.|+|||+++
T Consensus 171 kpdvty~dvggckeqieklrevv-e~pll~perfv~lgidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVV-ELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCCcccccccchHHHHHHHHHHH-hccccCHHHHhhcCCCCCCceEEeCCCCCchhHHH
Confidence 34566777766665555554321 1111111222222 123477999999999999853
No 452
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=89.03 E-value=2.2 Score=43.95 Aligned_cols=52 Identities=12% Similarity=0.286 Sum_probs=31.5
Q ss_pred HHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 007280 282 GRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (609)
Q Consensus 282 g~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SA 340 (609)
..+.+.+....+ ....+++||||||.|.. .....+++.+..++ ...+|+.+.
T Consensus 110 r~i~~~l~~~p~-~~~~kVvII~~ae~m~~----~aaNaLLK~LEEPp--~~~fILi~~ 161 (314)
T PRK07399 110 REIKRFLSRPPL-EAPRKVVVIEDAETMNE----AAANALLKTLEEPG--NGTLILIAP 161 (314)
T ss_pred HHHHHHHccCcc-cCCceEEEEEchhhcCH----HHHHHHHHHHhCCC--CCeEEEEEC
Confidence 344455544433 35689999999999854 34455666665543 444555544
No 453
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.03 E-value=1.8 Score=51.18 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.1
Q ss_pred CCCceeeccCCCCchHHh
Q 007280 182 GRDLMACAQTGSGKTAAF 199 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~ 199 (609)
..++|+.+|+|+|||...
T Consensus 194 ~~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 357899999999999843
No 454
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.78 E-value=0.77 Score=48.06 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=14.7
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
+..+++++|||||||..
T Consensus 122 ~g~ili~G~tGSGKTT~ 138 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT 138 (343)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45688999999999984
No 455
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.68 E-value=5 Score=46.59 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.9
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
..++|+.+|+|+|||..
T Consensus 203 ~~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAI 219 (731)
T ss_pred CCceEEECCCCCCHHHH
Confidence 35799999999999984
No 456
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.67 E-value=1.6 Score=49.76 Aligned_cols=43 Identities=12% Similarity=0.270 Sum_probs=25.7
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeecc
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~ 343 (609)
....+++||||||.|.. .....++..+..+ +... +++|.+|-+
T Consensus 116 ~g~~KV~IIDEa~~LT~----~A~NALLKtLEEP-P~~t-ifILaTte~ 158 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK----SAFNALLKTLEEP-PKHV-IFILATTEV 158 (725)
T ss_pred cCCCEEEEEEChhhCCH----HHHHHHHHHhhcC-CCce-EEEEEcCCh
Confidence 45678999999998754 3455566666544 3333 334444433
No 457
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=88.67 E-value=1.6 Score=47.49 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=32.8
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.+.-+++.+++|+|||...+. ++..+.+.. -.+|++..- +-..|+...+.++
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq-~a~~~a~~g------------~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQ-VACQLAKNQ------------MKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHH-HHHHHHhcC------------CcEEEEECc-CCHHHHHHHHHHc
Confidence 356688999999999984333 333333221 127887754 5567777666665
No 458
>CHL00176 ftsH cell division protein; Validated
Probab=88.51 E-value=2.1 Score=48.51 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=14.3
Q ss_pred CCCceeeccCCCCchH
Q 007280 182 GRDLMACAQTGSGKTA 197 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~ 197 (609)
.+.+++.+|+|+|||+
T Consensus 216 p~gVLL~GPpGTGKT~ 231 (638)
T CHL00176 216 PKGVLLVGPPGTGKTL 231 (638)
T ss_pred CceEEEECCCCCCHHH
Confidence 3569999999999998
No 459
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=88.47 E-value=1.9 Score=47.15 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=53.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh---c-CCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~---~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
+||.|+|+.-+..+++.+.+. ++.+..++|+.+..+....+. + ..+||||| +.+.++ +++..+++|
T Consensus 245 ~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaT-----dv~~rG-iDi~~v~~V 314 (460)
T PRK11776 245 CVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVAT-----DVAARG-LDIKALEAV 314 (460)
T ss_pred eEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEe-----cccccc-cchhcCCeE
Confidence 899999999999998888774 688999999987665544332 2 47899999 444443 557888888
Q ss_pred Eeccc
Q 007280 302 ALDEA 306 (609)
Q Consensus 302 VlDEa 306 (609)
|.-+.
T Consensus 315 I~~d~ 319 (460)
T PRK11776 315 INYEL 319 (460)
T ss_pred EEecC
Confidence 85443
No 460
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=88.40 E-value=1.8 Score=46.82 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=52.4
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh---c-CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~---~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+||.|++++-+..+++.+++ .++.+..++|+.+..+....+. . ..+||||| +.+.+ .+++..+++
T Consensus 247 ~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~~~-GiDip~v~~ 316 (434)
T PRK11192 247 RSIVFVRTRERVHELAGWLRK----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVAAR-GIDIDDVSH 316 (434)
T ss_pred eEEEEeCChHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----ccccc-CccCCCCCE
Confidence 399999999999999888876 4788999999887666544443 2 57999999 44443 356788888
Q ss_pred EEe
Q 007280 301 LAL 303 (609)
Q Consensus 301 lVl 303 (609)
||.
T Consensus 317 VI~ 319 (434)
T PRK11192 317 VIN 319 (434)
T ss_pred EEE
Confidence 874
No 461
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.36 E-value=1.7 Score=47.32 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=51.3
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhc----CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER----GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~----~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
++||.|-|+.-|.++...+++. ++++.+++|..+..+....|.. .+.||||| |..-+ .+++.+|++
T Consensus 343 KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT-----dVAaR-GLDi~dV~l 412 (519)
T KOG0331|consen 343 KVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT-----DVAAR-GLDVPDVDL 412 (519)
T ss_pred cEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEc-----ccccc-cCCCccccE
Confidence 4999999999999987777763 5789999999887766555542 58999999 44333 345777777
Q ss_pred EE
Q 007280 301 LA 302 (609)
Q Consensus 301 lV 302 (609)
||
T Consensus 413 VI 414 (519)
T KOG0331|consen 413 VI 414 (519)
T ss_pred EE
Confidence 76
No 462
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=88.33 E-value=0.73 Score=45.88 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=14.0
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
.++++.+|.|.|||..
T Consensus 53 DHvLl~GPPGlGKTTL 68 (332)
T COG2255 53 DHVLLFGPPGLGKTTL 68 (332)
T ss_pred CeEEeeCCCCCcHHHH
Confidence 4689999999999983
No 463
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.29 E-value=0.63 Score=50.12 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=29.1
Q ss_pred CHHHHHHHhhHhCCCC--ceeeccCCCCchHHhHHHHHHHHHh
Q 007280 169 TPVQRHAIPISIGGRD--LMACAQTGSGKTAAFCFPIISGIMR 209 (609)
Q Consensus 169 t~iQ~~~i~~i~~~~d--~ii~a~TGsGKT~a~llpil~~l~~ 209 (609)
.+.|.+.+..+++... +++.+|||||||.. |..+++.+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 7778888877665433 67899999999985 5556665544
No 464
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.26 E-value=1.9 Score=50.86 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=14.3
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
.++|+.+|+|+|||..
T Consensus 200 ~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 200 NNPVLIGEPGVGKTAI 215 (857)
T ss_pred CceEEECCCCCCHHHH
Confidence 4799999999999984
No 465
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=88.20 E-value=1.3 Score=43.63 Aligned_cols=103 Identities=17% Similarity=0.285 Sum_probs=70.2
Q ss_pred CCCcEEecCccCHHHHHHHHHhhhcCC----CcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcc-cCCCCc
Q 007280 428 GFPATTIHGDRTQQERELALRSFKSGK----TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG-RAGKSG 502 (609)
Q Consensus 428 ~~~~~~ihg~~~~~~R~~~~~~F~~g~----~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRag-R~g~~G 502 (609)
++.+..++++.+... -.|.++. ..|+|.=+.++|||.++++.+.....-+.+.+++.||.-=-| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 466666665544332 3344443 678899999999999999999999999998888888743222 566678
Q ss_pred eEEEEEcCCChhhHHHHHHHHHHhcccchHHHHHHHh
Q 007280 503 LATAFFNENNMSLARPLTELMQEANQEVPAWLNRYAS 539 (609)
Q Consensus 503 ~~~~f~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~a~ 539 (609)
.|-+|++++-......+. +..+++-+.|.+++.
T Consensus 185 l~Ri~~~~~l~~~f~~i~----~~~e~lr~~i~~~~~ 217 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIA----EAEEELREEIKEMAN 217 (239)
T ss_pred ceEEecCHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 899998766544444444 344555556666654
No 466
>PRK13764 ATPase; Provisional
Probab=88.17 E-value=0.79 Score=51.20 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=19.4
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGI 207 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l 207 (609)
..++++++++||||||. ++-.++..+
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHH
Confidence 46789999999999998 344454444
No 467
>PRK10263 DNA translocase FtsK; Provisional
Probab=88.10 E-value=3.3 Score=49.77 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=15.6
Q ss_pred CCceeeccCCCCchHHhHH
Q 007280 183 RDLMACAQTGSGKTAAFCF 201 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~ll 201 (609)
-++||.+.||||||.+.-.
T Consensus 1011 PHLLIAGaTGSGKSv~Lnt 1029 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNA 1029 (1355)
T ss_pred CcEEEecCCCCCHHHHHHH
Confidence 4789999999999996433
No 468
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=88.05 E-value=1.2 Score=44.48 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=62.0
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCc---HHHHHHHHHHHHHhhccCCeEEEEE
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT---RELSSQIHVEAKKFSYQTGVKVVVA 257 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt---r~La~Qi~~~~~~~~~~~~i~~~~~ 257 (609)
.+.=+++.|.||.|||.. ++-++.++..... ..+++++.- .+++..+..... ++....+
T Consensus 18 ~g~L~vi~a~pg~GKT~~-~l~ia~~~a~~~~-----------~~vly~SlEm~~~~l~~R~la~~s------~v~~~~i 79 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAF-ALQIALNAALNGG-----------YPVLYFSLEMSEEELAARLLARLS------GVPYNKI 79 (259)
T ss_dssp TT-EEEEEESTTSSHHHH-HHHHHHHHHHTTS-----------SEEEEEESSS-HHHHHHHHHHHHH------TSTHHHH
T ss_pred cCcEEEEEecccCCchHH-HHHHHHHHHHhcC-----------CeEEEEcCCCCHHHHHHHHHHHhh------cchhhhh
Confidence 344578999999999984 4445444444321 127777652 333333322211 1211111
Q ss_pred ECCcChHHHHHH-------HhcCCCEE-Ee----ChHHHHHHHHcccccccceEEEEeccchhhhhc----CCHHHHHHH
Q 007280 258 YGGAPINQQLRE-------LERGVDIL-VA----TPGRLVDLLERARVSLQMIRYLALDEADRMLDM----GFEPQIRKI 321 (609)
Q Consensus 258 ~gg~~~~~~~~~-------l~~~~~Il-V~----Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~----gf~~~i~~i 321 (609)
..+.-..+++.. +.. ..+. .. |++.|.+.+.........+++||||=.|.|-.. .....+..+
T Consensus 80 ~~g~l~~~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i 158 (259)
T PF03796_consen 80 RSGDLSDEEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEI 158 (259)
T ss_dssp HCCGCHHHHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHH
T ss_pred hccccCHHHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHH
Confidence 122222222222 222 2333 33 344555555543333377899999999987653 234445444
Q ss_pred HHHc
Q 007280 322 VQQM 325 (609)
Q Consensus 322 ~~~l 325 (609)
...+
T Consensus 159 ~~~L 162 (259)
T PF03796_consen 159 SREL 162 (259)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 469
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=87.97 E-value=1.4 Score=47.67 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=18.5
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
.+.-+++.|++|+|||. |++-++.++.
T Consensus 194 ~G~l~vi~g~pg~GKT~-~~l~~a~~~a 220 (434)
T TIGR00665 194 PSDLIILAARPSMGKTA-FALNIAENAA 220 (434)
T ss_pred CCeEEEEEeCCCCChHH-HHHHHHHHHH
Confidence 34557889999999998 4444444443
No 470
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=87.95 E-value=1.9 Score=50.14 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=15.1
Q ss_pred CCCCceeeccCCCCchH
Q 007280 181 GGRDLMACAQTGSGKTA 197 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~ 197 (609)
..+.+++.+|+|+|||+
T Consensus 211 ~~~giLL~GppGtGKT~ 227 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTL 227 (733)
T ss_pred CCceEEEECCCCCChHH
Confidence 45779999999999998
No 471
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=87.92 E-value=2.6 Score=49.90 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=63.5
Q ss_pred CceEEEEecchhhHHHHHHHHHhC--CC--CcEEecCccCHHHHHHHHHhhhcCCCcEEEEc-cccccCCCCCCccEEE
Q 007280 404 QALTLVFVETKKGADALEHWLYMN--GF--PATTIHGDRTQQERELALRSFKSGKTPILVAT-DVAARGLDIPHVAHVV 477 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~--~~--~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT-~v~~~GlDip~v~~VI 477 (609)
+.++.|.|||.=-|+..++.+++. ++ ++..+.--.+..++.++++..++|+++|||.| .++...+-+.++-+||
T Consensus 643 GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 643 GKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 567999999998888888777654 44 45567777789999999999999999999999 7889999999999988
No 472
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=87.89 E-value=4.1 Score=45.06 Aligned_cols=128 Identities=17% Similarity=0.142 Sum_probs=77.1
Q ss_pred CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhc-cCCeEEEEEECCc
Q 007280 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY-QTGVKVVVAYGGA 261 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~-~~~i~~~~~~gg~ 261 (609)
+-.+..-|--.|||. |+.||++.++..-. +..+.+++.-+..++-+.+|+..-+. +.+-+.+...
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s~~----------gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~--- 268 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKNII----------GISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN--- 268 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHhhc----------CceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee---
Confidence 456777899999998 79999998887422 24499999999988888777654332 2222211111
Q ss_pred ChHHHHHHHhcCCCEEEeChHHH-----HHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEE
Q 007280 262 PINQQLRELERGVDILVATPGRL-----VDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTM 336 (609)
Q Consensus 262 ~~~~~~~~l~~~~~IlV~Tpg~L-----~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~i 336 (609)
++-.|.+.-|+.= ....+...+.-+++++|++||||-+. .+.+..|+-.+. .++.++|
T Consensus 269 ----------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~---q~~~KiI 331 (668)
T PHA03372 269 ----------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLA---QNTTKII 331 (668)
T ss_pred ----------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhc---ccCceEE
Confidence 1123444433321 11112223345678999999999543 234455554442 4556778
Q ss_pred EEEee
Q 007280 337 LFSAT 341 (609)
Q Consensus 337 l~SAT 341 (609)
..|.|
T Consensus 332 fISS~ 336 (668)
T PHA03372 332 FISST 336 (668)
T ss_pred EEeCC
Confidence 88777
No 473
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.87 E-value=3.2 Score=46.85 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=26.7
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHh---CCCCceeeccCCCCchHHh
Q 007280 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISI---GGRDLMACAQTGSGKTAAF 199 (609)
Q Consensus 145 ~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~---~~~d~ii~a~TGsGKT~a~ 199 (609)
.+++++-.++..++.+... .-+..+ .++-+++.+|+|+|||.++
T Consensus 81 ~~ldel~~~~~ki~~l~~~-----------l~~~~~~~~~~~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETW-----------LKAQVLENAPKRILLITGPSGCGKSTTI 127 (637)
T ss_pred CCHHHhcCcHHHHHHHHHH-----------HHhcccccCCCcEEEEECCCCCCHHHHH
Confidence 3467777777666554421 111111 2334889999999999843
No 474
>PRK08506 replicative DNA helicase; Provisional
Probab=87.66 E-value=2 Score=47.02 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=54.2
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEE-C
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY-G 259 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~-g 259 (609)
.+.-+++.|.||.|||.. ++-++.++...+. .+++++.- .-..|+...+... ..++....+. +
T Consensus 191 ~G~LivIaarpg~GKT~f-al~ia~~~~~~g~------------~V~~fSlE-Ms~~ql~~Rlla~--~s~v~~~~i~~~ 254 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTL-CLNMALKALNQDK------------GVAFFSLE-MPAEQLMLRMLSA--KTSIPLQNLRTG 254 (472)
T ss_pred CCceEEEEcCCCCChHHH-HHHHHHHHHhcCC------------cEEEEeCc-CCHHHHHHHHHHH--hcCCCHHHHhcC
Confidence 344578899999999984 4444444443211 16666432 3345554443221 1222221111 2
Q ss_pred CcChHHHH-------HHHhcCCCEEEe-----ChHHHHHHHHcccccccceEEEEeccchhhh
Q 007280 260 GAPINQQL-------RELERGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRML 310 (609)
Q Consensus 260 g~~~~~~~-------~~l~~~~~IlV~-----Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l 310 (609)
..+ ..++ ..+.. ..+.|- |+..+...+.+.......+++||||=.+.|.
T Consensus 255 ~l~-~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 255 DLD-DDEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred CCC-HHHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 222 2222 22222 345543 4445544443322112357899999998765
No 475
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=87.65 E-value=0.97 Score=48.72 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=54.4
Q ss_pred eEEEEecchhhHHHHHHHHHhC----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-----ccccC----CCCCC
Q 007280 406 LTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-----VAARG----LDIPH 472 (609)
Q Consensus 406 k~lVF~~t~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-----v~~~G----lDip~ 472 (609)
-.|||++|++-|..+.++|... ++.++.|.|+|..+.++.+++. .-.|+|||. ++..+ =++.+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 4899999999999999998653 7899999999999999999987 567999995 22222 14566
Q ss_pred ccEEE
Q 007280 473 VAHVV 477 (609)
Q Consensus 473 v~~VI 477 (609)
|.++|
T Consensus 341 vkcLV 345 (731)
T KOG0347|consen 341 VKCLV 345 (731)
T ss_pred ceEEE
Confidence 77766
No 476
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=87.60 E-value=0.72 Score=51.01 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=35.8
Q ss_pred CCCHHHHHHHhhHh----CCCCceeeccCCCCchHHhHHHHHHHHHhh
Q 007280 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMRE 210 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~----~~~d~ii~a~TGsGKT~a~llpil~~l~~~ 210 (609)
+|+.||.+.+..+. +|+--|...|||+|||+..+-.++.+|-..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 68999998886544 688889999999999998777777777654
No 477
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=87.56 E-value=5.8 Score=41.39 Aligned_cols=145 Identities=17% Similarity=0.070 Sum_probs=61.5
Q ss_pred eeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHH----HHHHHHhhcc-CCeEEEEEECC
Q 007280 186 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI----HVEAKKFSYQ-TGVKVVVAYGG 260 (609)
Q Consensus 186 ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi----~~~~~~~~~~-~~i~~~~~~gg 260 (609)
|+.++.|+|||.+..+.++..++..... ..++++ ||..-+..+ ...+..+... ..+........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~----------~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPG----------RRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDR 69 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS------------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCC----------cEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCC
Confidence 4678899999998777777766654321 125555 655554442 2233333332 11221111111
Q ss_pred cChHHHHHHHhcCCCEEEeChHHH--HHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEE
Q 007280 261 APINQQLRELERGVDILVATPGRL--VDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (609)
Q Consensus 261 ~~~~~~~~~l~~~~~IlV~Tpg~L--~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~ 338 (609)
... +.++..|.+.+...= .+-+. =..+++|++||+-.+.+..+...+....... . ....+++
T Consensus 70 ~~~------~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~ 133 (384)
T PF03237_consen 70 KII------LPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATW----G-GSIRMYI 133 (384)
T ss_dssp EEE------ETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCS----T-T--EEEE
T ss_pred cEE------ecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcc----c-CcceEEe
Confidence 000 034455666653221 11111 2457899999988765543444443333322 1 1222255
Q ss_pred Eeec--cHHHHHHHHHhhcCc
Q 007280 339 SATF--PKEIQRLASDFLANY 357 (609)
Q Consensus 339 SAT~--~~~~~~l~~~~l~~~ 357 (609)
|.|. ...+..+......+.
T Consensus 134 s~p~~~~~~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 134 STPPNPGGWFYEIFQRNLDDD 154 (384)
T ss_dssp EE---SSSHHHHHHHHHHCTS
T ss_pred ecCCCCCCceeeeeehhhcCC
Confidence 5443 334444555555444
No 478
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=87.52 E-value=3.2 Score=38.82 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=35.7
Q ss_pred ceEEEEeccchhhhhcCCH--HHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHh
Q 007280 297 MIRYLALDEADRMLDMGFE--PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF 353 (609)
Q Consensus 297 ~i~~lVlDEah~~l~~gf~--~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~ 353 (609)
.+++|||||.--.+..++. +++..+++.. |....+|+.--..|+++.+++...
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~k----P~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKAR----PEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcC----CCCcEEEEECCCCCHHHHHHHHHH
Confidence 5899999999998887753 3444444432 445555555555788887777643
No 479
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=87.51 E-value=1.4 Score=43.53 Aligned_cols=136 Identities=15% Similarity=0.219 Sum_probs=77.6
Q ss_pred CCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCC------ccE
Q 007280 402 GKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPH------VAH 475 (609)
Q Consensus 402 ~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~------v~~ 475 (609)
.+..|+|||++...-.-...+.+++..-.+..+-+... ++ -.++.. ..+|.|.+|-..+|..|+. ++.
T Consensus 60 Dp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~-ED-p~~i~~----~aDi~~~~D~~~~G~~i~~~Ak~mGAkt 133 (275)
T PF12683_consen 60 DPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPH-ED-PEVISS----AADIVVNPDEISRGYTIVWAAKKMGAKT 133 (275)
T ss_dssp -TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS---S--HHHHHH----HSSEEEE--HHHHHHHHHHHHHHTT-S-
T ss_pred CCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCc-CC-HHHHhh----ccCeEeccchhhccHHHHHHHHHcCCce
Confidence 45889999999999988888889888777888876543 22 222222 4679999999999999975 678
Q ss_pred EEEcCCCCCHHHHHHHhhhc-cc--CCCCceEEEEEcCCChhhHHHHHHHHHHhcccchHHHHHHHhhccC
Q 007280 476 VVNFDLPNDIDDYVHRIGRT-GR--AGKSGLATAFFNENNMSLARPLTELMQEANQEVPAWLNRYASRANY 543 (609)
Q Consensus 476 VI~~d~p~s~~~y~QriGRa-gR--~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~a~~~~~ 543 (609)
.|||.+|.....-....-|. -+ +.+-|.-+++.+--|..--..+....+-..+.||.|+++|-+.-.|
T Consensus 134 FVh~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~taPDP~sd~gv~gaqqfIlE~vp~~i~kYGkdtaf 204 (275)
T PF12683_consen 134 FVHYSFPRHMSYELLARRRDIMEEACKDLGIKFVEVTAPDPTSDVGVAGAQQFILEDVPKWIKKYGKDTAF 204 (275)
T ss_dssp EEEEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEEEE---SSTCHHHHHHHHHHHHHHHHHHHH-S--EE
T ss_pred EEEEechhhcchHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCceeE
Confidence 99999999766322222221 11 2346888888875544333333333333456889999988765444
No 480
>PTZ00110 helicase; Provisional
Probab=87.46 E-value=6.5 Score=43.94 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=52.5
Q ss_pred cceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHH---Hhc-CCCEEEeChHHHHHHHHcccccccce
Q 007280 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMI 298 (609)
Q Consensus 223 ~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i 298 (609)
...+||.|+++.-|..++..++. .++.+..++|+....+.... +.. ...||||| +.+.++ +++.++
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~----~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT-----dv~~rG-IDi~~v 446 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRL----DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT-----DVASRG-LDVKDV 446 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHH----cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc-----chhhcC-CCcccC
Confidence 35799999999999998887765 36788889998876554433 333 47899999 455443 568888
Q ss_pred EEEEe
Q 007280 299 RYLAL 303 (609)
Q Consensus 299 ~~lVl 303 (609)
++||.
T Consensus 447 ~~VI~ 451 (545)
T PTZ00110 447 KYVIN 451 (545)
T ss_pred CEEEE
Confidence 88875
No 481
>PRK06904 replicative DNA helicase; Validated
Probab=87.41 E-value=3.8 Score=44.83 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=55.3
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECC
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg 260 (609)
.+.=+|+.|.+|.|||. |.+-+..++..... -.++|++.- .-..|+...+-.. ..++....+..+
T Consensus 220 ~G~LiiIaarPg~GKTa-falnia~~~a~~~g-----------~~Vl~fSlE-Ms~~ql~~Rlla~--~s~v~~~~i~~g 284 (472)
T PRK06904 220 PSDLIIVAARPSMGKTT-FAMNLCENAAMASE-----------KPVLVFSLE-MPAEQIMMRMLAS--LSRVDQTKIRTG 284 (472)
T ss_pred CCcEEEEEeCCCCChHH-HHHHHHHHHHHhcC-----------CeEEEEecc-CCHHHHHHHHHHh--hCCCCHHHhccC
Confidence 34446789999999998 44444444432211 116666542 3345554333221 222222222222
Q ss_pred -cChHHHHH-------HHhcCCCEEEe-----ChHHHHHHHHcccccccceEEEEeccchhhhh
Q 007280 261 -APINQQLR-------ELERGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRMLD 311 (609)
Q Consensus 261 -~~~~~~~~-------~l~~~~~IlV~-----Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~ 311 (609)
.-..+++. .+.....+.|- |+..+...+.+.......+++||||=.+.|..
T Consensus 285 ~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 285 QNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 11122222 22233446663 45555443332211123578999999887753
No 482
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=87.32 E-value=0.83 Score=50.90 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=22.7
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHc
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l 325 (609)
+++-+++||||+-.-+|..-+..+.+.+..+
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 5566789999998878776666676666654
No 483
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=87.30 E-value=1.5 Score=42.51 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.2
Q ss_pred CCCceeeccCCCCchHHhH
Q 007280 182 GRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~l 200 (609)
+.-+++.+++|+|||...+
T Consensus 19 g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4557899999999998533
No 484
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.20 E-value=0.71 Score=47.54 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHh-hHhCCCCceeeccCCCCchHHhHHHHH
Q 007280 165 YVKPTPVQRHAIP-ISIGGRDLMACAQTGSGKTAAFCFPII 204 (609)
Q Consensus 165 ~~~pt~iQ~~~i~-~i~~~~d~ii~a~TGsGKT~a~llpil 204 (609)
+..+.+.|..-+. ++..++++++|++||||||.. +.+++
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall 164 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALL 164 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHH
Confidence 4567777766555 455789999999999999983 44444
No 485
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.13 E-value=4.2 Score=45.15 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=35.9
Q ss_pred CCcccCccccCCCCHHHHHHHHH---CCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHH
Q 007280 140 VPPAVNTFAEIDLGEALNLNIRR---CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 140 ~p~~~~~f~~~~l~~~l~~~i~~---~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a 198 (609)
++-|..+|++.+=-+++.+.|+. ....+|-.+.+..| ..-+.+|+-+|.|||||+.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~l 484 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLL 484 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHH
Confidence 45566789999755666655542 23333444444332 2347899999999999984
No 486
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.13 E-value=0.88 Score=42.94 Aligned_cols=138 Identities=24% Similarity=0.377 Sum_probs=71.4
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH--hhccCCeEEEEEE
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK--FSYQTGVKVVVAY 258 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~--~~~~~~i~~~~~~ 258 (609)
.++-.-+.+|.|.||++ |+.++.+++..... .-...-.-|--+|+.+||..+.---++ +....-++-.+.+
T Consensus 26 ~g~iTs~IGPNGAGKST--LLS~~sRL~~~d~G-----~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~F 98 (252)
T COG4604 26 KGGITSIIGPNGAGKST--LLSMMSRLLKKDSG-----EITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGF 98 (252)
T ss_pred CCceeEEECCCCccHHH--HHHHHHHhccccCc-----eEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhc
Confidence 45667789999999998 77788888754321 111112245567889998765321111 1111111112222
Q ss_pred C------CcChHHHHHHHhcCCCEEEeC--hHHHHHHHHccc--------ccccceEEEEeccchhhhhcCCHHHHHHHH
Q 007280 259 G------GAPINQQLRELERGVDILVAT--PGRLVDLLERAR--------VSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (609)
Q Consensus 259 g------g~~~~~~~~~l~~~~~IlV~T--pg~L~~~l~~~~--------~~l~~i~~lVlDEah~~l~~gf~~~i~~i~ 322 (609)
| |....+....+....+.+=-+ -++.++.|.-+. +..++-+||.|||-=.-|||-..-++-+++
T Consensus 99 GRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~L 178 (252)
T COG4604 99 GRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKIL 178 (252)
T ss_pred CCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHH
Confidence 3 322333333332211111111 234444442211 234667899999998888887665665555
Q ss_pred HHc
Q 007280 323 QQM 325 (609)
Q Consensus 323 ~~l 325 (609)
..+
T Consensus 179 rrl 181 (252)
T COG4604 179 RRL 181 (252)
T ss_pred HHH
Confidence 554
No 487
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=87.07 E-value=5 Score=44.65 Aligned_cols=134 Identities=20% Similarity=0.194 Sum_probs=76.0
Q ss_pred CHHHHHHHhhHhC------CCC-ceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 169 TPVQRHAIPISIG------GRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 169 t~iQ~~~i~~i~~------~~d-~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
|--|.+||-.+.. -+. +-+.|.-|-||++|.-+.|...+. .++. -+.|.+|.-|=..-+++
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa-~Gys-----------nIyvtSPspeNlkTlFe 322 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVA-FGYS-----------NIYVTSPSPENLKTLFE 322 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHh-cCcc-----------eEEEcCCChHHHHHHHH
Confidence 5568888864432 233 447899999999987776655543 3332 28899999887777666
Q ss_pred HHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHH-----------------cccccccceEEEEec
Q 007280 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLE-----------------RARVSLQMIRYLALD 304 (609)
Q Consensus 242 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~-----------------~~~~~l~~i~~lVlD 304 (609)
.+-+=....+++-.+ .++||-.|..-+...+. .+...+...++||+|
T Consensus 323 Fv~kGfDaL~Yqeh~----------------Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D~~kl~q~eLlVID 386 (1011)
T KOG2036|consen 323 FVFKGFDALEYQEHV----------------DYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHDHQKLGQAELLVID 386 (1011)
T ss_pred HHHcchhhhcchhhc----------------chhhhhhcChhhhhhEEEEEEeccccceeEeeccchhhhccCCcEEEec
Confidence 554421111111000 12233222222222111 112236678899999
Q ss_pred cchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeecc
Q 007280 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 305 Eah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~ 343 (609)
||-.+- .+.+++++- ..+++|+.|++
T Consensus 387 EAAAIP----Lplvk~Lig---------PylVfmaSTin 412 (1011)
T KOG2036|consen 387 EAAAIP----LPLVKKLIG---------PYLVFMASTIN 412 (1011)
T ss_pred hhhcCC----HHHHHHhhc---------ceeEEEeeccc
Confidence 998652 355555542 24889999974
No 488
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.03 E-value=0.64 Score=52.77 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=37.1
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
.++++++|+||||||..+++|-+... .. .+||+=|--|+........++
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~---~g------------S~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTF---KG------------SVIALDVKGELFELTSRARKA 187 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcC---CC------------CEEEEeCCchHHHHHHHHHHh
Confidence 45899999999999999999976432 10 189999999887766554444
No 489
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=86.96 E-value=0.54 Score=48.24 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=14.0
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
.++++++|.|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4589999999999983
No 490
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.92 E-value=2.5 Score=46.47 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=34.3
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.+.-+++.+++|+|||+..+..+ ....+.+ -.+++++ .-|-..|+...++.+
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~-~~~~~~g------------e~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFL-ENACANK------------ERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH-HHHHHCC------------CeEEEEE-eeCCHHHHHHHHHHc
Confidence 34568999999999998533322 2222221 1277766 567788888888776
No 491
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=86.91 E-value=9.4 Score=43.60 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=70.6
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHH---HHhc-CCCEEEeChHHHHHHHHcccccccceE
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLR---ELER-GVDILVATPGRLVDLLERARVSLQMIR 299 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~ 299 (609)
..+||+|+|+..+..+.+.+.+. ++++..++++....+... .+.. ..+|+||| +.+.+ .+.+..++
T Consensus 443 ~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~r-GfDiP~v~ 512 (655)
T TIGR00631 443 ERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLRE-GLDLPEVS 512 (655)
T ss_pred CEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----ChhcC-CeeeCCCc
Confidence 35999999999999988877764 678888888766544333 3322 47899999 55544 45688899
Q ss_pred EEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHH
Q 007280 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351 (609)
Q Consensus 300 ~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~ 351 (609)
+||+-|++...-......+.+++-..... ..-.++++--.....+...+.
T Consensus 513 lVvi~DadifG~p~~~~~~iqriGRagR~--~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 513 LVAILDADKEGFLRSERSLIQTIGRAARN--VNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred EEEEeCcccccCCCCHHHHHHHhcCCCCC--CCCEEEEEEcCCCHHHHHHHH
Confidence 99988887632211223333333332222 123455555555544444333
No 492
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=86.89 E-value=2.7 Score=46.13 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=64.1
Q ss_pred EEEEEeec--cHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEec
Q 007280 335 TMLFSATF--PKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVE 412 (609)
Q Consensus 335 ~il~SAT~--~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~ 412 (609)
.+.++++. +.++.++++.++.+...+. .... .-...+.+..+..+.-.+.+.+.+...... ....+.|.|+
T Consensus 591 ~v~l~~syrSt~eI~efan~~l~d~~~~~--p~~r-sge~p~~i~~~~ne~l~qr~~~ii~~mkk~----~~etiaVi~k 663 (747)
T COG3973 591 YVGLIASYRSTAEIDEFANSLLPDRFRIH--PLTR-SGEKPAVIMSVANEELVQRNPDIIPRMKKR----GSETIAVICK 663 (747)
T ss_pred hhhhhhhhcChHHHHHHHHHhccCCCccc--hhhc-CCCCceeeeccchHHHHHhhHHHHHHHHhc----CCCceEEECC
Confidence 44555553 5678888888877411111 0000 011112222222222222333333332222 2455789999
Q ss_pred chhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCC
Q 007280 413 TKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLP 482 (609)
Q Consensus 413 t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p 482 (609)
+...|..+.+.|++... +..-.+.=+.|..|.+-|.| -.+.||.+ ++||.||+.
T Consensus 664 t~~d~~~~~d~lre~~~----------~r~I~k~nq~f~~~~~vipv---y~aKGlEF---D~viv~d~s 717 (747)
T COG3973 664 TDHDCKAVMDSLREKDS----------QRTIAKENQRFHHGSDVIPV---YDAKGLEF---DHVIVVDPS 717 (747)
T ss_pred cHHHHHHHHHHHhhcch----------hhHHHhhcccccCCceEEEe---eeccccee---eeEEEecch
Confidence 99999999999975421 11112222345555544433 23568877 788888873
No 493
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=86.88 E-value=6 Score=37.23 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=33.2
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhh
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~ 247 (609)
.+.-+++.|++|+|||.. ++-++..+.....-.. ........+|++..--. ..++.+.+.++.
T Consensus 31 ~g~l~~i~g~~g~GKT~~-~~~l~~~~~~g~~~~g--~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTL-ALQLAAALATGRPFLG--ELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHH-HHHHHHHHHT---TT-----------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHhCCccCC--cccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 456688999999999984 4445555553211100 00001123677765433 567777777654
No 494
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=86.87 E-value=1.1 Score=46.72 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=14.3
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
..+++.+|+|+|||..
T Consensus 52 ~~~ll~GppG~GKT~l 67 (328)
T PRK00080 52 DHVLLYGPPGLGKTTL 67 (328)
T ss_pred CcEEEECCCCccHHHH
Confidence 5689999999999984
No 495
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=86.83 E-value=1 Score=50.64 Aligned_cols=31 Identities=32% Similarity=0.392 Sum_probs=25.1
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHc
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l 325 (609)
+++-.++|||||..-+|..-+..+.+.+..+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l 511 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKL 511 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHH
Confidence 4556789999999999888788888877755
No 496
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=86.72 E-value=1.4 Score=51.65 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=32.8
Q ss_pred CccccCCCCHHHHHHHHHCCC---CCCCHHHHHHHhhHhCCCCceeeccCCCCchHH
Q 007280 145 NTFAEIDLGEALNLNIRRCKY---VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 145 ~~f~~~~l~~~l~~~i~~~~~---~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a 198 (609)
..|++++..+.+...++++-+ ..|.-+|...| ..-+.++.++|.|+|||+.
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i---tpPrgvL~~GppGTGkTl~ 315 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNI---TPPRGVLFHGPPGTGKTLM 315 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhccc---CCCcceeecCCCCCchhHH
Confidence 467777766666666666533 22333333332 2346799999999999983
No 497
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=86.71 E-value=7.2 Score=39.65 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=21.0
Q ss_pred chhhHHHHHHHHHhCCCCcEEecCccC
Q 007280 413 TKKGADALEHWLYMNGFPATTIHGDRT 439 (609)
Q Consensus 413 t~~~~~~l~~~L~~~~~~~~~ihg~~~ 439 (609)
++-.++.|++.|. .++.+...|-++.
T Consensus 259 SV~~~e~l~~~l~-~~~~v~~~Hrd~~ 284 (288)
T PRK05416 259 SVAIAERLAERLS-KGYNVQVRHRDLE 284 (288)
T ss_pred HHHHHHHHHHHHh-CCCcEEEEeCccc
Confidence 4667889999994 6889999998875
No 498
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.66 E-value=6.4 Score=40.69 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=33.3
Q ss_pred cccCccccCC-CCHHHHHHHH--HCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchH
Q 007280 142 PAVNTFAEID-LGEALNLNIR--RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 142 ~~~~~f~~~~-l~~~l~~~i~--~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~ 197 (609)
.|-.+|++.+ |.+.+.+--+ .+..++|--+++-.|. .-+.+|+-+|.|+|||+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~---PPKGVLLYGPPGTGKTL 200 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID---PPKGVLLYGPPGTGKTL 200 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC---CCCceEeeCCCCCcHHH
Confidence 4556788884 6655543222 2344455555544442 24789999999999997
No 499
>PRK14701 reverse gyrase; Provisional
Probab=86.66 E-value=1.6 Score=54.61 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCceEEEEecchhhHHHHHHHHHh------CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc
Q 007280 403 KQALTLVFVETKKGADALEHWLYM------NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 462 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~------~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~ 462 (609)
+..++||.+||+.-+..+.+.|.. .++.+..+||+++..++.++++.+++|..+|||+|.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TP 186 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTA 186 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECC
No 500
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=86.57 E-value=0.54 Score=44.09 Aligned_cols=106 Identities=17% Similarity=0.280 Sum_probs=0.0
Q ss_pred eeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHH
Q 007280 186 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQ 265 (609)
Q Consensus 186 ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~ 265 (609)
++.+|+.||||.-.+--+-..-..... ++++-|. +-...+...++.+.|..
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~~~-------------v~~~kp~-------------~D~R~~~~~I~s~~g~~--- 55 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAGKK-------------VLVFKPA-------------IDTRYGEDKIVSHDGIS--- 55 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT-E-------------EEEEEES-------------TSCCCCSSEEEHTTSCE---
T ss_pred EEECCcCChhHHHHHHHHHHHHhCCCe-------------EEEEEec-------------ccCcCCCCeEEecCCCc---
Q ss_pred HHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 007280 266 QLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (609)
Q Consensus 266 ~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SA 340 (609)
.+-++.....+.++....... +++|++||||- |.+++..++..+ ...-..|.+++
T Consensus 56 --------~~~~~~~~~~~~~~~~~~~~~---~dvI~IDEaQF-----f~~~i~~l~~~~----~~~g~~Vi~~G 110 (176)
T PF00265_consen 56 --------LEAIVDPIDNLFEIIDILEND---YDVIGIDEAQF-----FDEQIVQLVEIL----ANKGIPVICAG 110 (176)
T ss_dssp --------EEEESSEESSGGGGGGGCCTT---CSEEEESSGGG-----STTTHHHHHHHH----HHTT-EEEEEE
T ss_pred --------ccccccchhhHHHHHHHhccC---CCEEEEechHh-----hHHHHHHHHHHH----HhCCCeEEEEe
Done!