Query 007280
Match_columns 609
No_of_seqs 494 out of 3226
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 21:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.3E-73 4.4E-78 616.2 44.7 409 114-537 25-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 5.3E-65 1.8E-69 546.0 45.1 406 132-543 2-415 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 8.1E-61 2.8E-65 512.7 38.7 372 141-533 33-405 (410)
4 3eiq_A Eukaryotic initiation f 100.0 4.9E-59 1.7E-63 499.0 32.5 377 140-537 35-413 (414)
5 3i5x_A ATP-dependent RNA helic 100.0 2.8E-57 9.5E-62 505.4 39.8 364 152-523 79-461 (563)
6 1s2m_A Putative ATP-dependent 100.0 1.5E-57 5.3E-62 485.5 36.0 373 142-536 18-390 (400)
7 1xti_A Probable ATP-dependent 100.0 5E-56 1.7E-60 472.0 37.2 369 145-534 8-381 (391)
8 3sqw_A ATP-dependent RNA helic 100.0 4.6E-56 1.6E-60 496.6 38.2 363 152-522 28-409 (579)
9 1fuu_A Yeast initiation factor 100.0 1.9E-57 6.4E-62 483.3 22.1 374 142-537 18-392 (394)
10 3fht_A ATP-dependent RNA helic 100.0 2.8E-55 9.6E-60 469.4 38.4 368 141-532 21-401 (412)
11 1hv8_A Putative ATP-dependent 100.0 5.3E-55 1.8E-59 459.4 37.9 358 145-530 6-364 (367)
12 3pey_A ATP-dependent RNA helic 100.0 7.2E-55 2.5E-59 463.1 35.8 357 143-524 3-370 (395)
13 3fmp_B ATP-dependent RNA helic 100.0 2.3E-56 7.9E-61 488.2 20.0 366 142-531 89-467 (479)
14 2z0m_A 337AA long hypothetical 100.0 3.2E-52 1.1E-56 433.2 36.2 335 152-524 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 3.1E-50 1.1E-54 446.9 37.2 343 148-520 24-383 (591)
16 3fho_A ATP-dependent RNA helic 100.0 3.6E-52 1.2E-56 457.4 18.4 369 141-534 115-494 (508)
17 1oyw_A RECQ helicase, ATP-depe 100.0 1.1E-49 3.6E-54 438.1 34.7 343 145-521 2-353 (523)
18 3oiy_A Reverse gyrase helicase 100.0 2.8E-50 9.5E-55 431.8 29.1 329 156-524 10-376 (414)
19 1tf5_A Preprotein translocase 100.0 4.3E-48 1.5E-52 430.4 26.4 327 162-513 79-547 (844)
20 4a2p_A RIG-I, retinoic acid in 100.0 7.1E-48 2.4E-52 428.3 25.6 338 164-514 4-511 (556)
21 3tbk_A RIG-I helicase domain; 100.0 2.2E-47 7.5E-52 423.9 25.3 341 166-519 3-515 (555)
22 2ykg_A Probable ATP-dependent 100.0 6.3E-48 2.2E-52 440.6 20.4 362 157-531 3-540 (696)
23 3l9o_A ATP-dependent RNA helic 100.0 1.1E-46 3.8E-51 443.6 28.3 334 144-511 161-597 (1108)
24 4a2q_A RIG-I, retinoic acid in 100.0 5E-46 1.7E-50 429.9 29.4 339 162-513 243-751 (797)
25 4ddu_A Reverse gyrase; topoiso 100.0 1E-45 3.5E-50 435.2 32.1 323 162-524 74-503 (1104)
26 2va8_A SSO2462, SKI2-type heli 100.0 3.4E-45 1.2E-49 418.8 35.2 340 145-512 8-409 (715)
27 2zj8_A DNA helicase, putative 100.0 4.9E-46 1.7E-50 425.8 27.6 336 146-512 2-388 (720)
28 2fsf_A Preprotein translocase 100.0 1.2E-45 4E-50 409.6 26.2 326 163-513 71-585 (853)
29 2p6r_A Afuhel308 helicase; pro 100.0 6.4E-46 2.2E-50 423.6 23.0 342 146-512 2-389 (702)
30 1gku_B Reverse gyrase, TOP-RG; 100.0 7.4E-46 2.5E-50 436.7 21.4 325 161-525 52-468 (1054)
31 1nkt_A Preprotein translocase 100.0 6.3E-45 2.2E-49 404.0 26.9 339 162-525 107-635 (922)
32 4a2w_A RIG-I, retinoic acid in 100.0 5.7E-45 2E-49 425.7 25.7 340 161-513 242-751 (936)
33 2xgj_A ATP-dependent RNA helic 100.0 3.2E-43 1.1E-47 410.8 36.4 315 162-511 82-499 (1010)
34 1wp9_A ATP-dependent RNA helic 100.0 2.6E-43 8.9E-48 383.5 33.2 325 167-513 9-477 (494)
35 4gl2_A Interferon-induced heli 100.0 2.3E-44 8E-49 411.3 20.9 332 166-510 6-517 (699)
36 2whx_A Serine protease/ntpase/ 100.0 2.4E-44 8.3E-49 400.9 8.8 324 150-532 155-502 (618)
37 1gm5_A RECG; helicase, replica 100.0 1.2E-42 4E-47 394.2 21.8 334 154-526 356-711 (780)
38 4a4z_A Antiviral helicase SKI2 100.0 1.1E-41 3.7E-46 398.0 29.3 308 164-509 37-490 (997)
39 2jlq_A Serine protease subunit 100.0 1.1E-42 3.6E-47 376.2 16.1 312 164-534 1-337 (451)
40 4f92_B U5 small nuclear ribonu 100.0 1.1E-40 3.6E-45 405.6 31.9 350 152-519 911-1316(1724)
41 2eyq_A TRCF, transcription-rep 100.0 8.5E-40 2.9E-44 387.3 37.3 322 152-512 588-923 (1151)
42 4f92_B U5 small nuclear ribonu 100.0 3.2E-40 1.1E-44 401.4 29.0 344 164-518 76-480 (1724)
43 2oca_A DAR protein, ATP-depend 100.0 1.1E-40 3.6E-45 367.1 21.8 313 166-509 112-453 (510)
44 1wrb_A DJVLGB; RNA helicase, D 100.0 3.1E-40 1E-44 329.8 21.6 250 125-375 1-252 (253)
45 1yks_A Genome polyprotein [con 100.0 2.3E-42 7.8E-47 372.0 5.4 289 178-533 4-324 (440)
46 2xau_A PRE-mRNA-splicing facto 100.0 1.3E-40 4.4E-45 379.9 17.0 340 142-513 69-445 (773)
47 2wv9_A Flavivirin protease NS2 100.0 6.6E-41 2.3E-45 375.5 14.2 314 160-531 203-556 (673)
48 3o8b_A HCV NS3 protease/helica 100.0 7.3E-41 2.5E-45 369.8 13.9 279 167-515 217-518 (666)
49 3fe2_A Probable ATP-dependent 100.0 7.6E-39 2.6E-43 317.5 26.0 225 132-365 16-240 (242)
50 2z83_A Helicase/nucleoside tri 100.0 1.1E-39 3.7E-44 353.2 13.0 281 176-519 15-323 (459)
51 2fwr_A DNA repair protein RAD2 100.0 1E-39 3.4E-44 355.8 11.6 293 166-511 92-454 (472)
52 3iuy_A Probable ATP-dependent 100.0 4.1E-37 1.4E-41 302.1 22.4 217 137-362 11-228 (228)
53 2v6i_A RNA helicase; membrane, 100.0 3.3E-37 1.1E-41 331.1 20.9 270 181-508 1-288 (431)
54 3ber_A Probable ATP-dependent 100.0 3.6E-36 1.2E-40 299.4 23.9 207 142-362 40-247 (249)
55 3h1t_A Type I site-specific re 100.0 6.4E-37 2.2E-41 342.8 19.6 309 167-500 178-545 (590)
56 3bor_A Human initiation factor 100.0 1.8E-36 6.3E-41 299.4 20.3 212 138-363 23-235 (237)
57 2oxc_A Probable ATP-dependent 100.0 4.5E-36 1.6E-40 295.2 22.8 212 136-362 15-228 (230)
58 3fmo_B ATP-dependent RNA helic 100.0 3E-36 1E-40 308.0 21.9 204 143-363 90-298 (300)
59 1vec_A ATP-dependent RNA helic 100.0 2.5E-35 8.5E-40 284.5 24.1 202 145-360 3-205 (206)
60 1q0u_A Bstdead; DEAD protein, 100.0 5.1E-36 1.7E-40 292.5 18.9 206 144-363 3-212 (219)
61 2pl3_A Probable ATP-dependent 100.0 4.4E-35 1.5E-39 289.2 25.1 211 142-363 22-233 (236)
62 1qde_A EIF4A, translation init 100.0 2.2E-35 7.7E-40 288.8 22.2 211 139-364 8-218 (224)
63 3rc3_A ATP-dependent RNA helic 100.0 1.1E-35 3.8E-40 332.3 22.4 281 172-510 145-444 (677)
64 3ly5_A ATP-dependent RNA helic 100.0 3.9E-35 1.3E-39 294.2 24.0 203 145-357 52-257 (262)
65 3dkp_A Probable ATP-dependent 100.0 1.7E-35 5.8E-40 293.9 18.6 222 132-365 12-243 (245)
66 1z63_A Helicase of the SNF2/RA 100.0 1.2E-34 4E-39 318.1 26.6 306 167-507 37-447 (500)
67 2gxq_A Heat resistant RNA depe 100.0 1E-34 3.5E-39 280.3 22.7 204 146-362 2-205 (207)
68 1t6n_A Probable ATP-dependent 100.0 1.1E-34 3.6E-39 283.2 21.1 208 140-361 9-219 (220)
69 3dmq_A RNA polymerase-associat 100.0 2.9E-35 9.8E-40 344.3 18.8 332 166-523 152-625 (968)
70 3jux_A Protein translocase sub 100.0 8.6E-33 2.9E-37 300.6 34.5 320 167-513 75-589 (822)
71 1z3i_X Similar to RAD54-like; 100.0 2E-31 6.9E-36 299.9 34.7 323 167-511 55-528 (644)
72 3mwy_W Chromo domain-containin 100.0 8.5E-32 2.9E-36 310.4 32.3 331 166-525 235-696 (800)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 6.6E-32 2.2E-36 313.8 25.5 316 167-509 271-707 (1038)
74 2p6n_A ATP-dependent RNA helic 100.0 9.8E-31 3.4E-35 248.9 15.7 181 351-539 9-190 (191)
75 2ipc_A Preprotein translocase 100.0 1.4E-28 4.9E-33 272.1 34.7 131 162-310 75-215 (997)
76 1c4o_A DNA nucleotide excision 100.0 5.7E-29 2E-33 279.8 29.8 178 332-523 380-562 (664)
77 2jgn_A DBX, DDX3, ATP-dependen 100.0 2.8E-29 9.6E-34 237.8 18.1 169 366-540 14-182 (185)
78 2d7d_A Uvrabc system protein B 100.0 3.3E-28 1.1E-32 273.5 28.9 178 332-523 386-568 (661)
79 2hjv_A ATP-dependent RNA helic 100.0 1.1E-27 3.9E-32 222.1 17.4 157 367-530 5-161 (163)
80 1t5i_A C_terminal domain of A 99.9 1E-27 3.4E-32 224.4 14.7 161 369-536 3-164 (172)
81 1fuk_A Eukaryotic initiation f 99.9 8.1E-28 2.8E-32 223.6 11.5 159 370-535 2-161 (165)
82 2rb4_A ATP-dependent RNA helic 99.9 7.7E-27 2.6E-31 219.2 15.2 157 368-531 4-167 (175)
83 3eaq_A Heat resistant RNA depe 99.9 4.5E-26 1.5E-30 220.7 16.0 149 373-528 7-155 (212)
84 3i32_A Heat resistant RNA depe 99.9 2.2E-25 7.5E-30 226.2 15.9 146 372-524 3-148 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 1.5E-26 5.3E-31 216.0 0.0 151 371-528 3-154 (170)
86 3b6e_A Interferon-induced heli 99.9 1.5E-24 5.1E-29 210.1 12.4 170 164-341 30-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 7E-23 2.4E-27 225.7 19.4 307 163-510 4-520 (540)
88 3llm_A ATP-dependent RNA helic 99.9 9.5E-23 3.3E-27 200.6 13.8 182 153-357 47-231 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 3.6E-20 1.2E-24 204.7 30.9 314 167-510 3-530 (551)
90 1rif_A DAR protein, DNA helica 99.9 1.5E-22 5.2E-27 204.8 9.0 157 166-348 112-268 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 2.7E-19 9.1E-24 199.5 18.8 346 167-537 3-612 (620)
92 1z5z_A Helicase of the SNF2/RA 99.8 3.9E-19 1.3E-23 178.0 12.8 128 379-511 92-224 (271)
93 2fz4_A DNA repair protein RAD2 99.8 1.2E-18 4.3E-23 171.2 14.1 139 166-345 92-231 (237)
94 1w36_D RECD, exodeoxyribonucle 98.9 1.1E-09 3.9E-14 121.7 6.8 146 169-341 151-298 (608)
95 4b3f_X DNA-binding protein smu 98.3 1.2E-05 4E-10 90.3 17.3 67 167-246 189-256 (646)
96 3upu_A ATP-dependent DNA helic 98.1 9.7E-06 3.3E-10 87.0 10.4 71 161-243 19-94 (459)
97 2gk6_A Regulator of nonsense t 98.1 1.5E-05 5E-10 89.0 11.7 70 165-246 178-247 (624)
98 2xzl_A ATP-dependent helicase 98.0 2.8E-05 9.6E-10 88.8 14.0 70 165-246 358-427 (802)
99 3lfu_A DNA helicase II; SF1 he 98.0 0.00034 1.2E-08 78.3 22.3 71 166-247 8-78 (647)
100 3hgt_A HDA1 complex subunit 3; 98.0 5.7E-05 2E-09 75.8 12.9 124 380-513 106-239 (328)
101 3e1s_A Exodeoxyribonuclease V, 98.0 1.7E-05 5.8E-10 87.3 9.6 63 167-242 189-251 (574)
102 2wjy_A Regulator of nonsense t 97.9 5.9E-05 2E-09 86.0 13.8 70 165-246 354-423 (800)
103 2o0j_A Terminase, DNA packagin 97.1 0.0032 1.1E-07 65.2 12.7 71 167-248 163-233 (385)
104 3ec2_A DNA replication protein 97.0 0.0016 5.6E-08 59.8 8.6 18 181-198 37-54 (180)
105 3cpe_A Terminase, DNA packagin 96.7 0.013 4.5E-07 64.6 13.7 73 167-250 163-235 (592)
106 3vkw_A Replicase large subunit 96.6 0.004 1.4E-07 65.4 8.6 107 184-341 163-269 (446)
107 1pjr_A PCRA; DNA repair, DNA r 96.4 0.012 4E-07 66.6 11.2 110 166-308 10-121 (724)
108 1uaa_A REP helicase, protein ( 96.2 0.0079 2.7E-07 67.5 8.0 70 167-247 2-71 (673)
109 2zpa_A Uncharacterized protein 96.0 0.0087 3E-07 66.0 7.3 113 167-343 175-289 (671)
110 1xx6_A Thymidine kinase; NESG, 96.0 0.008 2.7E-07 55.9 6.0 39 182-233 8-46 (191)
111 2orw_A Thymidine kinase; TMTK, 96.0 0.016 5.3E-07 53.6 7.8 39 182-233 3-41 (184)
112 2kjq_A DNAA-related protein; s 96.0 0.0057 2E-07 54.5 4.7 29 296-325 82-110 (149)
113 1d2n_A N-ethylmaleimide-sensit 95.9 0.099 3.4E-06 51.2 13.9 49 296-344 123-177 (272)
114 1l8q_A Chromosomal replication 95.6 0.038 1.3E-06 55.8 9.6 17 182-198 37-53 (324)
115 2b8t_A Thymidine kinase; deoxy 95.6 0.019 6.4E-07 54.8 6.8 90 182-309 12-101 (223)
116 2v1u_A Cell division control p 95.6 0.05 1.7E-06 55.9 10.6 17 182-198 44-60 (387)
117 2j9r_A Thymidine kinase; TK1, 95.5 0.0099 3.4E-07 56.0 4.4 39 183-234 29-67 (214)
118 3te6_A Regulatory protein SIR3 95.5 0.037 1.3E-06 55.7 8.8 43 296-342 131-173 (318)
119 3h4m_A Proteasome-activating n 95.5 0.035 1.2E-06 54.7 8.6 51 145-198 14-67 (285)
120 3e2i_A Thymidine kinase; Zn-bi 95.3 0.014 4.8E-07 54.9 4.8 39 182-233 28-66 (219)
121 3eie_A Vacuolar protein sortin 95.1 0.12 4.2E-06 52.0 11.2 48 145-198 15-67 (322)
122 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.19 6.4E-06 48.5 12.0 17 182-198 39-55 (262)
123 1a5t_A Delta prime, HOLB; zinc 94.9 0.083 2.8E-06 53.6 9.6 33 168-200 3-42 (334)
124 2w58_A DNAI, primosome compone 94.9 0.055 1.9E-06 50.3 7.6 16 183-198 55-70 (202)
125 2orv_A Thymidine kinase; TP4A 94.9 0.045 1.6E-06 52.1 6.9 20 182-201 19-38 (234)
126 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.19 6.5E-06 50.7 12.1 49 144-198 8-61 (322)
127 3kl4_A SRP54, signal recogniti 94.9 0.072 2.5E-06 55.9 9.0 55 296-354 178-235 (433)
128 2chg_A Replication factor C sm 94.8 0.3 1E-05 45.2 12.8 16 183-198 39-54 (226)
129 2z4s_A Chromosomal replication 94.8 0.075 2.6E-06 56.2 9.3 45 297-344 194-239 (440)
130 1w4r_A Thymidine kinase; type 94.6 0.051 1.7E-06 50.4 6.2 38 182-232 20-57 (195)
131 3u4q_A ATP-dependent helicase/ 94.6 0.043 1.5E-06 65.9 7.3 71 167-246 10-80 (1232)
132 1gm5_A RECG; helicase, replica 94.4 0.13 4.3E-06 58.4 10.3 75 404-478 417-496 (780)
133 3bos_A Putative DNA replicatio 94.4 0.038 1.3E-06 52.6 5.2 18 181-198 51-68 (242)
134 4b4t_M 26S protease regulatory 94.3 0.052 1.8E-06 57.0 6.3 54 141-197 174-230 (434)
135 2qby_A CDC6 homolog 1, cell di 94.2 0.15 5E-06 52.3 9.6 17 182-198 45-61 (386)
136 1jbk_A CLPB protein; beta barr 94.2 0.28 9.7E-06 44.2 10.6 17 182-198 43-59 (195)
137 2qby_B CDC6 homolog 3, cell di 94.1 0.14 4.6E-06 52.7 9.1 17 182-198 45-61 (384)
138 2qgz_A Helicase loader, putati 94.0 0.11 3.6E-06 52.2 7.7 17 182-198 152-168 (308)
139 2hjv_A ATP-dependent RNA helic 94.0 0.83 2.8E-05 40.6 13.0 71 226-306 38-112 (163)
140 1fnn_A CDC6P, cell division co 93.9 0.18 6.1E-06 51.8 9.4 15 184-198 46-60 (389)
141 3u61_B DNA polymerase accessor 93.9 0.24 8E-06 49.7 10.1 30 296-325 104-133 (324)
142 3cf0_A Transitional endoplasmi 93.7 0.13 4.6E-06 51.2 7.9 18 181-198 48-65 (301)
143 3syl_A Protein CBBX; photosynt 93.7 0.072 2.5E-06 53.1 5.9 18 182-199 67-84 (309)
144 2p65_A Hypothetical protein PF 93.7 0.071 2.4E-06 48.3 5.3 17 182-198 43-59 (187)
145 2p6n_A ATP-dependent RNA helic 93.5 1.7 5.8E-05 39.9 14.5 70 226-305 57-130 (191)
146 1iqp_A RFCS; clamp loader, ext 93.3 0.46 1.6E-05 47.3 11.2 15 184-198 48-62 (327)
147 3pfi_A Holliday junction ATP-d 93.2 0.58 2E-05 47.1 11.8 16 183-198 56-71 (338)
148 1t5i_A C_terminal domain of A 93.2 1 3.4E-05 40.5 12.2 71 226-306 34-108 (172)
149 3dm5_A SRP54, signal recogniti 92.9 0.32 1.1E-05 51.1 9.4 53 298-354 183-236 (443)
150 4b4t_J 26S protease regulatory 92.8 0.1 3.5E-06 54.0 5.4 52 143-197 143-197 (405)
151 1g5t_A COB(I)alamin adenosyltr 92.7 0.36 1.2E-05 44.6 8.4 52 296-351 119-172 (196)
152 2pk2_A Cyclin-T1, protein TAT; 92.7 0.069 2.4E-06 54.7 3.9 27 513-539 231-257 (358)
153 4b4t_H 26S protease regulatory 92.6 0.24 8.3E-06 52.1 8.0 53 142-197 203-258 (467)
154 3eaq_A Heat resistant RNA depe 92.6 0.44 1.5E-05 44.7 9.2 68 226-303 34-105 (212)
155 2qp9_X Vacuolar protein sortin 92.5 0.17 5.7E-06 51.8 6.5 17 182-198 84-100 (355)
156 1sxj_D Activator 1 41 kDa subu 92.4 0.49 1.7E-05 47.8 10.0 16 183-198 59-74 (353)
157 2rb4_A ATP-dependent RNA helic 92.3 0.35 1.2E-05 43.7 7.9 69 225-303 36-108 (175)
158 1lv7_A FTSH; alpha/beta domain 92.2 1.1 3.7E-05 43.1 11.8 17 182-198 45-61 (257)
159 1fuk_A Eukaryotic initiation f 92.1 0.55 1.9E-05 41.9 8.8 71 226-306 33-107 (165)
160 3d8b_A Fidgetin-like protein 1 92.0 0.5 1.7E-05 48.2 9.4 18 181-198 116-133 (357)
161 2dr3_A UPF0273 protein PH0284; 91.9 1 3.4E-05 42.7 11.0 18 181-198 22-39 (247)
162 3vfd_A Spastin; ATPase, microt 91.7 0.37 1.3E-05 49.8 8.2 17 182-198 148-164 (389)
163 1sxj_E Activator 1 40 kDa subu 91.5 0.28 9.6E-06 49.7 7.0 42 295-341 132-173 (354)
164 4b4t_L 26S protease subunit RP 91.3 0.1 3.5E-06 54.8 3.3 53 142-197 175-230 (437)
165 1njg_A DNA polymerase III subu 91.3 1.4 4.9E-05 41.0 11.4 15 184-198 47-61 (250)
166 1sxj_C Activator 1 40 kDa subu 91.3 1.1 3.9E-05 45.1 11.2 38 296-338 109-146 (340)
167 4b4t_I 26S protease regulatory 91.2 0.13 4.5E-06 53.6 4.0 53 142-197 176-231 (437)
168 2z43_A DNA repair and recombin 91.1 0.28 9.5E-06 49.4 6.3 18 182-199 107-124 (324)
169 1jr3_A DNA polymerase III subu 91.1 1.5 5.2E-05 44.4 12.1 15 184-198 40-54 (373)
170 3b9p_A CG5977-PA, isoform A; A 91.1 0.49 1.7E-05 46.7 8.0 17 182-198 54-70 (297)
171 3oiy_A Reverse gyrase helicase 90.7 0.81 2.8E-05 47.5 9.6 75 404-479 64-146 (414)
172 3uk6_A RUVB-like 2; hexameric 90.5 3.4 0.00012 41.8 14.1 17 182-198 70-86 (368)
173 2fna_A Conserved hypothetical 90.3 6.2 0.00021 39.3 15.7 42 281-325 124-168 (357)
174 1sxj_A Activator 1 95 kDa subu 90.3 0.38 1.3E-05 51.8 6.8 41 296-342 147-189 (516)
175 1w5s_A Origin recognition comp 90.0 2.3 7.9E-05 43.7 12.5 16 183-198 51-68 (412)
176 2q6t_A DNAB replication FORK h 90.0 0.27 9.2E-06 52.0 5.2 27 181-208 199-225 (444)
177 2w0m_A SSO2452; RECA, SSPF, un 89.9 0.73 2.5E-05 43.2 7.8 19 180-198 21-39 (235)
178 2jgn_A DBX, DDX3, ATP-dependen 89.9 2.4 8.1E-05 38.6 11.0 69 226-304 49-121 (185)
179 3i32_A Heat resistant RNA depe 89.9 0.77 2.6E-05 45.6 8.1 70 226-305 31-104 (300)
180 1cr0_A DNA primase/helicase; R 89.8 0.53 1.8E-05 46.5 7.0 19 180-198 33-51 (296)
181 3pvs_A Replication-associated 89.8 0.35 1.2E-05 51.1 5.9 16 183-198 51-66 (447)
182 2zan_A Vacuolar protein sortin 89.8 0.92 3.1E-05 47.8 9.2 51 144-198 130-183 (444)
183 2ehv_A Hypothetical protein PH 89.8 0.3 1E-05 46.6 5.0 46 296-345 134-184 (251)
184 2cvh_A DNA repair and recombin 89.7 0.4 1.4E-05 44.7 5.7 19 181-199 19-37 (220)
185 2qen_A Walker-type ATPase; unk 89.7 1.1 3.7E-05 44.9 9.4 16 182-197 31-46 (350)
186 3hjh_A Transcription-repair-co 89.7 0.95 3.2E-05 48.2 9.1 88 181-287 13-116 (483)
187 2eyq_A TRCF, transcription-rep 89.6 1.1 3.8E-05 53.1 10.6 74 404-477 652-730 (1151)
188 2gno_A DNA polymerase III, gam 89.4 0.99 3.4E-05 44.9 8.6 43 295-343 80-122 (305)
189 4ddu_A Reverse gyrase; topoiso 89.3 0.72 2.5E-05 54.4 8.6 77 404-481 121-205 (1104)
190 1sxj_B Activator 1 37 kDa subu 89.2 1 3.4E-05 44.7 8.6 15 184-198 44-58 (323)
191 4b4t_K 26S protease regulatory 88.9 0.44 1.5E-05 49.9 5.7 53 142-197 166-221 (428)
192 1t6n_A Probable ATP-dependent 88.8 3.8 0.00013 37.9 11.9 73 404-479 82-165 (220)
193 3fht_A ATP-dependent RNA helic 88.6 3 0.0001 42.7 12.0 70 225-304 268-341 (412)
194 4a1f_A DNAB helicase, replicat 88.6 0.61 2.1E-05 47.2 6.4 28 180-208 44-71 (338)
195 1n0w_A DNA repair protein RAD5 88.6 0.68 2.3E-05 43.9 6.5 19 181-199 23-41 (243)
196 3hu3_A Transitional endoplasmi 88.2 0.84 2.9E-05 48.7 7.5 17 182-198 238-254 (489)
197 2r6a_A DNAB helicase, replicat 87.8 1.1 3.9E-05 47.2 8.3 27 181-208 202-228 (454)
198 2iut_A DNA translocase FTSK; n 87.1 1.7 6E-05 46.9 9.1 26 182-208 214-239 (574)
199 2i4i_A ATP-dependent RNA helic 87.1 2.4 8E-05 43.7 10.1 69 225-303 278-350 (417)
200 3bh0_A DNAB-like replicative h 87.1 0.51 1.8E-05 47.3 4.7 28 180-208 66-93 (315)
201 2zts_A Putative uncharacterize 86.7 1.1 3.7E-05 42.5 6.7 19 181-199 29-47 (251)
202 1hqc_A RUVB; extended AAA-ATPa 86.6 0.59 2E-05 46.6 4.9 17 182-198 38-54 (324)
203 2i1q_A DNA repair and recombin 86.4 0.56 1.9E-05 47.0 4.6 18 182-199 98-115 (322)
204 1nlf_A Regulatory protein REPA 86.0 0.8 2.7E-05 44.8 5.5 22 179-200 27-48 (279)
205 3cf2_A TER ATPase, transitiona 85.9 1.6 5.4E-05 49.4 8.3 53 142-197 471-526 (806)
206 3pey_A ATP-dependent RNA helic 85.7 5.8 0.0002 40.1 12.1 74 225-308 245-322 (395)
207 1ls1_A Signal recognition part 85.6 5.3 0.00018 39.3 11.3 17 182-198 98-114 (295)
208 3i5x_A ATP-dependent RNA helic 85.6 2.7 9.1E-05 45.5 10.0 75 225-306 341-419 (563)
209 1hv8_A Putative ATP-dependent 85.5 5.2 0.00018 40.0 11.5 71 226-306 241-315 (367)
210 3cf2_A TER ATPase, transitiona 85.4 0.68 2.3E-05 52.4 5.0 15 183-197 239-253 (806)
211 1vma_A Cell division protein F 85.3 4.4 0.00015 40.2 10.5 16 183-198 105-120 (306)
212 3e70_C DPA, signal recognition 84.8 3.5 0.00012 41.4 9.6 54 297-354 211-265 (328)
213 1xti_A Probable ATP-dependent 84.7 6.5 0.00022 39.8 11.9 73 225-307 252-328 (391)
214 2chq_A Replication factor C sm 84.6 2.5 8.5E-05 41.6 8.4 15 184-198 40-54 (319)
215 3m6a_A ATP-dependent protease 84.6 0.81 2.8E-05 49.6 5.0 18 181-198 107-124 (543)
216 1oyw_A RECQ helicase, ATP-depe 84.3 2 6.7E-05 46.3 8.0 59 404-462 65-123 (523)
217 2ce7_A Cell division protein F 84.2 0.85 2.9E-05 48.4 4.9 16 183-198 50-65 (476)
218 2d7d_A Uvrabc system protein B 84.0 7 0.00024 43.2 12.5 75 225-309 447-525 (661)
219 3sqw_A ATP-dependent RNA helic 83.8 3.6 0.00012 44.7 10.0 76 225-307 290-369 (579)
220 1v5w_A DMC1, meiotic recombina 83.8 0.98 3.3E-05 45.8 5.0 17 182-198 122-138 (343)
221 3ber_A Probable ATP-dependent 83.5 6.5 0.00022 37.4 10.6 71 404-478 111-192 (249)
222 3k1j_A LON protease, ATP-depen 83.1 2.3 7.8E-05 46.7 8.0 21 178-198 56-76 (604)
223 2v1x_A ATP-dependent DNA helic 82.8 2.1 7.3E-05 46.8 7.6 59 404-462 84-144 (591)
224 2zr9_A Protein RECA, recombina 82.8 0.89 3E-05 46.2 4.2 20 181-200 60-79 (349)
225 3fe2_A Probable ATP-dependent 82.8 3.6 0.00012 38.9 8.4 72 404-479 102-183 (242)
226 2j0s_A ATP-dependent RNA helic 82.7 14 0.00047 37.7 13.5 71 225-305 278-352 (410)
227 2l8b_A Protein TRAI, DNA helic 82.6 1.4 4.6E-05 40.1 4.8 121 169-341 36-158 (189)
228 4a74_A DNA repair and recombin 82.5 4.1 0.00014 37.8 8.6 18 181-198 24-41 (231)
229 1s2m_A Putative ATP-dependent 82.4 12 0.00042 37.9 13.0 71 225-305 260-334 (400)
230 2pt7_A CAG-ALFA; ATPase, prote 82.2 5.4 0.00019 40.0 9.8 19 179-197 168-186 (330)
231 2oxc_A Probable ATP-dependent 81.8 6.3 0.00022 36.8 9.7 70 404-478 92-172 (230)
232 2yjt_D ATP-dependent RNA helic 82.4 0.29 9.9E-06 44.1 0.0 70 226-305 33-106 (170)
233 1xp8_A RECA protein, recombina 81.4 1.4 4.7E-05 45.1 5.0 27 181-208 73-99 (366)
234 3bgw_A DNAB-like replicative h 81.4 0.65 2.2E-05 49.0 2.6 27 181-208 196-222 (444)
235 2px0_A Flagellar biosynthesis 80.8 5.7 0.00019 39.2 9.2 53 296-351 181-234 (296)
236 2gxq_A Heat resistant RNA depe 80.7 4.7 0.00016 36.8 8.2 72 403-478 71-150 (207)
237 3co5_A Putative two-component 80.7 1.1 3.6E-05 39.0 3.4 19 179-197 24-42 (143)
238 2db3_A ATP-dependent RNA helic 80.6 6.2 0.00021 41.1 10.0 68 226-303 303-374 (434)
239 2yhs_A FTSY, cell division pro 80.5 10 0.00034 40.2 11.4 58 297-354 375-435 (503)
240 3iuy_A Probable ATP-dependent 80.4 3.6 0.00012 38.4 7.3 72 403-478 93-173 (228)
241 1wp9_A ATP-dependent RNA helic 79.7 5.3 0.00018 41.5 9.2 72 226-307 364-447 (494)
242 1qvr_A CLPB protein; coiled co 79.7 5.4 0.00018 45.7 9.8 17 182-198 191-207 (854)
243 2pk2_A Cyclin-T1, protein TAT; 79.4 0.38 1.3E-05 49.2 0.0 20 515-534 237-256 (358)
244 1e9r_A Conjugal transfer prote 79.4 1.3 4.4E-05 46.4 4.2 44 181-237 52-95 (437)
245 2eyu_A Twitching motility prot 79.2 1.3 4.5E-05 42.9 3.8 28 179-208 22-49 (261)
246 1c4o_A DNA nucleotide excision 79.0 25 0.00086 38.8 14.7 74 225-308 441-518 (664)
247 3cmu_A Protein RECA, recombina 78.7 2 6.9E-05 53.2 5.9 21 181-201 1426-1446(2050)
248 3n70_A Transport activator; si 78.4 1.3 4.6E-05 38.4 3.3 19 180-198 22-40 (145)
249 3jvv_A Twitching mobility prot 78.2 2 6.9E-05 43.7 5.1 17 181-197 122-138 (356)
250 1vec_A ATP-dependent RNA helic 77.3 12 0.00042 33.8 9.9 71 404-478 71-152 (206)
251 3ice_A Transcription terminati 77.2 4.1 0.00014 41.8 6.8 30 169-198 158-190 (422)
252 3bor_A Human initiation factor 76.3 9.1 0.00031 35.9 8.9 72 404-478 98-179 (237)
253 2pl3_A Probable ATP-dependent 75.2 4.9 0.00017 37.7 6.7 70 404-478 97-177 (236)
254 3hr8_A Protein RECA; alpha and 74.7 1.5 5E-05 44.7 2.8 26 181-207 60-85 (356)
255 1gku_B Reverse gyrase, TOP-RG; 74.5 7.2 0.00025 45.8 9.0 73 404-478 99-181 (1054)
256 1yks_A Genome polyprotein [con 73.7 2.5 8.6E-05 44.3 4.5 66 225-302 179-245 (440)
257 2xau_A PRE-mRNA-splicing facto 73.3 9.9 0.00034 42.9 9.5 73 225-303 305-393 (773)
258 3pxi_A Negative regulator of g 73.1 2.5 8.6E-05 47.7 4.5 105 173-339 504-627 (758)
259 3b85_A Phosphate starvation-in 71.1 4.1 0.00014 37.9 4.8 37 169-207 9-45 (208)
260 4gp7_A Metallophosphoesterase; 70.9 3.2 0.00011 37.0 3.9 18 181-198 8-25 (171)
261 1ypw_A Transitional endoplasmi 70.6 10 0.00036 43.0 8.9 17 181-197 237-253 (806)
262 1pzn_A RAD51, DNA repair and r 70.3 9.1 0.00031 38.6 7.6 17 296-312 230-246 (349)
263 3ly5_A ATP-dependent RNA helic 70.0 15 0.0005 35.2 8.7 71 404-478 126-207 (262)
264 3cmu_A Protein RECA, recombina 69.8 5.1 0.00017 49.7 6.4 26 179-204 1078-1103(2050)
265 2r2a_A Uncharacterized protein 69.5 1.8 6.1E-05 40.1 1.9 44 298-341 88-132 (199)
266 2vhj_A Ntpase P4, P4; non- hyd 69.5 1.8 6.1E-05 43.3 2.0 19 181-199 122-140 (331)
267 1qde_A EIF4A, translation init 68.2 13 0.00046 34.1 7.9 70 404-478 82-161 (224)
268 3io5_A Recombination and repai 68.1 5.7 0.0002 39.6 5.3 41 184-235 30-70 (333)
269 3u4q_B ATP-dependent helicase/ 68.0 14 0.00049 43.8 9.7 88 186-308 5-92 (1166)
270 3lda_A DNA repair protein RAD5 68.0 5.2 0.00018 41.3 5.2 17 182-198 178-194 (400)
271 2ffh_A Protein (FFH); SRP54, s 67.7 19 0.00067 37.3 9.5 17 183-199 99-115 (425)
272 1p9r_A General secretion pathw 67.3 6.9 0.00024 40.6 6.0 16 182-197 167-182 (418)
273 2v3c_C SRP54, signal recogniti 67.2 21 0.00071 37.1 9.7 55 296-353 179-233 (432)
274 1wrb_A DJVLGB; RNA helicase, D 66.7 27 0.00094 32.8 9.9 71 404-478 100-180 (253)
275 1tf7_A KAIC; homohexamer, hexa 66.6 25 0.00087 37.5 10.6 30 295-325 369-403 (525)
276 3eiq_A Eukaryotic initiation f 66.1 5.6 0.00019 40.7 5.1 70 226-305 283-356 (414)
277 2oap_1 GSPE-2, type II secreti 65.9 5.2 0.00018 42.8 4.9 30 168-197 245-275 (511)
278 1q57_A DNA primase/helicase; d 65.5 2 6.7E-05 46.0 1.4 26 181-207 241-266 (503)
279 1q0u_A Bstdead; DEAD protein, 64.9 14 0.00048 34.0 7.2 71 404-478 72-156 (219)
280 3dmn_A Putative DNA helicase; 64.5 75 0.0026 28.0 11.8 77 385-481 47-123 (174)
281 4a2p_A RIG-I, retinoic acid in 64.4 11 0.00039 40.0 7.4 93 382-478 33-136 (556)
282 3tbk_A RIG-I helicase domain; 64.2 9.3 0.00032 40.7 6.6 93 382-478 30-133 (555)
283 2wv9_A Flavivirin protease NS2 64.1 5.4 0.00018 44.3 4.7 67 224-302 411-478 (673)
284 1kgd_A CASK, peripheral plasma 63.9 3.4 0.00012 37.2 2.6 17 181-197 4-20 (180)
285 3nwn_A Kinesin-like protein KI 63.9 3.7 0.00013 41.7 3.1 24 175-198 96-121 (359)
286 3dkp_A Probable ATP-dependent 63.7 4.4 0.00015 38.3 3.5 73 404-479 98-182 (245)
287 1ixz_A ATP-dependent metallopr 62.9 3.2 0.00011 39.6 2.4 50 143-197 11-64 (254)
288 4a2q_A RIG-I, retinoic acid in 62.9 15 0.00052 41.5 8.3 93 382-478 274-377 (797)
289 2v6i_A RNA helicase; membrane, 62.7 8.4 0.00029 40.1 5.7 51 225-280 173-224 (431)
290 3rc3_A ATP-dependent RNA helic 62.4 12 0.0004 41.6 7.0 73 226-309 323-401 (677)
291 2z0m_A 337AA long hypothetical 62.3 10 0.00036 37.2 6.1 67 226-306 223-293 (337)
292 2j37_W Signal recognition part 62.0 28 0.00097 36.9 9.7 16 184-199 103-118 (504)
293 1f9v_A Kinesin-like protein KA 61.8 4.5 0.00015 40.9 3.2 25 175-199 76-102 (347)
294 2oca_A DAR protein, ATP-depend 61.8 35 0.0012 35.9 10.6 73 226-307 350-426 (510)
295 1ex7_A Guanylate kinase; subst 61.6 4.5 0.00015 36.9 2.9 23 183-210 2-24 (186)
296 1bg2_A Kinesin; motor protein, 61.4 4.5 0.00015 40.5 3.1 24 175-198 69-94 (325)
297 1fuu_A Yeast initiation factor 61.0 43 0.0015 33.4 10.8 70 404-478 89-168 (394)
298 3t0q_A AGR253WP; kinesin, alph 60.8 4.5 0.00015 40.9 3.0 25 175-199 77-103 (349)
299 2zfi_A Kinesin-like protein KI 60.3 4.3 0.00015 41.4 2.8 24 175-198 81-106 (366)
300 1v8k_A Kinesin-like protein KI 60.3 4.5 0.00016 41.7 3.0 25 175-199 146-172 (410)
301 2nr8_A Kinesin-like protein KI 60.2 4.3 0.00015 41.2 2.7 24 175-198 95-120 (358)
302 2gza_A Type IV secretion syste 60.2 4.7 0.00016 41.0 3.1 20 178-197 171-190 (361)
303 3o8b_A HCV NS3 protease/helica 60.1 7.2 0.00025 43.0 4.7 65 224-302 397-461 (666)
304 3dc4_A Kinesin-like protein NO 60.0 4.2 0.00015 41.0 2.7 23 176-198 87-111 (344)
305 1iy2_A ATP-dependent metallopr 59.9 3.9 0.00013 39.6 2.4 49 145-197 37-88 (278)
306 1lvg_A Guanylate kinase, GMP k 59.9 5.2 0.00018 36.6 3.1 17 181-197 3-19 (198)
307 1sky_E F1-ATPase, F1-ATP synth 59.7 24 0.00083 37.0 8.4 21 178-198 147-167 (473)
308 1t5c_A CENP-E protein, centrom 59.6 4.5 0.00015 40.9 2.7 25 175-199 69-95 (349)
309 2h58_A Kinesin-like protein KI 59.4 5.1 0.00017 40.2 3.1 26 174-199 71-98 (330)
310 3b6u_A Kinesin-like protein KI 59.4 5 0.00017 40.9 3.1 24 175-198 93-118 (372)
311 3gbj_A KIF13B protein; kinesin 59.2 4.6 0.00016 41.0 2.7 25 175-199 84-110 (354)
312 4etp_A Kinesin-like protein KA 59.2 5.3 0.00018 41.2 3.3 25 175-199 132-158 (403)
313 3b5x_A Lipid A export ATP-bind 59.1 17 0.00059 39.4 7.6 42 295-341 496-537 (582)
314 2vvg_A Kinesin-2; motor protei 59.1 5.2 0.00018 40.5 3.1 24 176-199 82-107 (350)
315 1j8m_F SRP54, signal recogniti 58.9 50 0.0017 32.2 10.3 16 184-199 100-115 (297)
316 1x88_A Kinesin-like protein KI 58.9 4.3 0.00015 41.3 2.5 24 175-198 80-105 (359)
317 4a14_A Kinesin, kinesin-like p 58.7 5.3 0.00018 40.3 3.1 25 175-199 75-101 (344)
318 2whx_A Serine protease/ntpase/ 58.5 12 0.00041 41.0 6.1 66 225-302 357-423 (618)
319 2bjv_A PSP operon transcriptio 58.4 7.7 0.00026 37.1 4.2 19 180-198 27-45 (265)
320 4f4c_A Multidrug resistance pr 58.4 6.3 0.00022 47.4 4.2 31 295-325 1233-1263(1321)
321 1goj_A Kinesin, kinesin heavy 58.3 5.4 0.00018 40.4 3.1 23 176-198 73-97 (355)
322 2x8a_A Nuclear valosin-contain 58.2 2.6 9E-05 41.0 0.7 52 143-197 5-59 (274)
323 2y65_A Kinesin, kinesin heavy 58.2 5.5 0.00019 40.5 3.1 23 176-198 77-101 (365)
324 3lre_A Kinesin-like protein KI 58.0 5.5 0.00019 40.4 3.1 23 176-198 98-122 (355)
325 3cob_A Kinesin heavy chain-lik 58.0 7.3 0.00025 39.6 4.0 25 175-199 71-97 (369)
326 4gl2_A Interferon-induced heli 57.9 4.9 0.00017 44.7 3.0 73 225-303 402-488 (699)
327 2ewv_A Twitching motility prot 57.8 4.6 0.00016 41.3 2.5 27 180-208 134-160 (372)
328 2wbe_C Bipolar kinesin KRP-130 57.8 4.4 0.00015 41.4 2.3 24 175-198 92-117 (373)
329 3ney_A 55 kDa erythrocyte memb 57.7 5.3 0.00018 36.8 2.7 18 180-197 17-34 (197)
330 4ag6_A VIRB4 ATPase, type IV s 57.5 6.8 0.00023 40.1 3.8 42 181-235 34-75 (392)
331 2jlq_A Serine protease subunit 57.3 8.6 0.00029 40.3 4.6 66 225-302 190-256 (451)
332 2heh_A KIF2C protein; kinesin, 57.2 5.3 0.00018 40.9 2.8 25 175-199 126-152 (387)
333 3fmp_B ATP-dependent RNA helic 56.7 2.3 7.8E-05 45.0 0.0 68 225-302 335-406 (479)
334 2owm_A Nckin3-434, related to 56.1 5.5 0.00019 41.7 2.8 25 175-199 128-154 (443)
335 2l82_A Designed protein OR32; 55.7 79 0.0027 25.4 11.2 48 407-454 5-52 (162)
336 2rep_A Kinesin-like protein KI 55.0 5.7 0.0002 40.5 2.7 24 175-198 107-132 (376)
337 1ojl_A Transcriptional regulat 54.8 13 0.00044 36.6 5.2 18 181-198 24-41 (304)
338 3bfn_A Kinesin-like protein KI 54.6 4.6 0.00016 41.4 1.8 22 178-199 93-116 (388)
339 3u06_A Protein claret segregat 54.5 6.7 0.00023 40.6 3.1 25 174-198 129-155 (412)
340 3tau_A Guanylate kinase, GMP k 54.5 6.2 0.00021 36.4 2.6 17 181-197 7-23 (208)
341 3cmw_A Protein RECA, recombina 54.4 9.6 0.00033 46.6 4.8 121 182-346 1431-1571(1706)
342 3vaa_A Shikimate kinase, SK; s 54.3 7.2 0.00025 35.5 3.1 18 181-198 24-41 (199)
343 1z6g_A Guanylate kinase; struc 53.8 7 0.00024 36.4 2.9 18 180-197 21-38 (218)
344 2r62_A Cell division protease 53.7 10 0.00034 36.3 4.1 17 182-198 44-60 (268)
345 3iij_A Coilin-interacting nucl 53.2 6.9 0.00024 34.8 2.7 19 180-198 9-27 (180)
346 4ehx_A Tetraacyldisaccharide 4 53.0 13 0.00044 36.9 4.8 29 404-433 226-254 (315)
347 3nbx_X ATPase RAVA; AAA+ ATPas 52.9 11 0.00036 40.2 4.4 25 173-197 32-56 (500)
348 3hws_A ATP-dependent CLP prote 52.6 8 0.00027 39.1 3.3 18 181-198 50-67 (363)
349 2c9o_A RUVB-like 1; hexameric 52.0 14 0.00047 38.8 5.1 18 182-199 63-80 (456)
350 2qor_A Guanylate kinase; phosp 51.9 7.3 0.00025 35.7 2.6 18 180-197 10-27 (204)
351 3a8t_A Adenylate isopentenyltr 51.8 6.3 0.00021 39.6 2.3 17 183-199 41-57 (339)
352 3dmq_A RNA polymerase-associat 51.4 67 0.0023 37.1 11.2 73 226-307 506-584 (968)
353 3tr0_A Guanylate kinase, GMP k 50.9 8.1 0.00028 35.1 2.8 17 181-197 6-22 (205)
354 2va8_A SSO2462, SKI2-type heli 50.6 56 0.0019 36.2 10.2 73 226-304 255-363 (715)
355 1qhx_A CPT, protein (chloramph 50.3 6 0.0002 35.1 1.7 17 182-198 3-19 (178)
356 1znw_A Guanylate kinase, GMP k 50.3 7.9 0.00027 35.5 2.6 29 178-208 16-44 (207)
357 3fmo_B ATP-dependent RNA helic 50.1 42 0.0014 32.7 8.1 70 404-480 162-243 (300)
358 3b6e_A Interferon-induced heli 50.1 15 0.00051 33.4 4.5 55 404-462 82-140 (216)
359 3ipz_A Monothiol glutaredoxin- 49.9 98 0.0033 24.8 9.3 65 388-458 7-77 (109)
360 3foz_A TRNA delta(2)-isopenten 49.8 10 0.00036 37.5 3.5 15 184-198 12-26 (316)
361 2r44_A Uncharacterized protein 49.8 7.1 0.00024 38.8 2.4 22 177-198 41-62 (331)
362 1ofh_A ATP-dependent HSL prote 49.7 24 0.00081 34.2 6.2 17 182-198 50-66 (310)
363 3trf_A Shikimate kinase, SK; a 49.3 6.3 0.00021 35.2 1.7 17 182-198 5-21 (185)
364 2j41_A Guanylate kinase; GMP, 48.8 8.4 0.00029 35.0 2.6 19 180-198 4-22 (207)
365 1kag_A SKI, shikimate kinase I 48.6 9.9 0.00034 33.4 2.9 16 182-197 4-19 (173)
366 3a00_A Guanylate kinase, GMP k 48.4 9.6 0.00033 34.2 2.8 15 183-197 2-16 (186)
367 3lw7_A Adenylate kinase relate 48.3 6.4 0.00022 34.5 1.6 15 184-198 3-17 (179)
368 3gk5_A Uncharacterized rhodane 48.0 16 0.00054 29.6 3.9 37 403-439 54-90 (108)
369 1rj9_A FTSY, signal recognitio 47.9 15 0.00052 36.1 4.4 26 182-209 102-127 (304)
370 2qmh_A HPR kinase/phosphorylas 47.9 7.8 0.00027 35.8 2.1 18 181-198 33-50 (205)
371 3c8u_A Fructokinase; YP_612366 47.8 9.6 0.00033 35.0 2.8 26 182-209 22-47 (208)
372 2ykg_A Probable ATP-dependent 47.8 25 0.00087 38.7 6.8 71 404-478 61-142 (696)
373 3exa_A TRNA delta(2)-isopenten 47.7 7.3 0.00025 38.7 2.0 15 184-198 5-19 (322)
374 4f4c_A Multidrug resistance pr 47.7 19 0.00064 43.3 5.9 31 295-325 570-600 (1321)
375 2i3b_A HCR-ntpase, human cance 47.7 12 0.0004 34.1 3.3 42 295-343 103-146 (189)
376 1zp6_A Hypothetical protein AT 47.6 6.7 0.00023 35.2 1.6 18 180-197 7-24 (191)
377 3zyw_A Glutaredoxin-3; metal b 47.2 1.1E+02 0.0038 24.6 9.1 56 404-459 15-76 (111)
378 3b9q_A Chloroplast SRP recepto 47.2 14 0.00048 36.4 4.0 26 182-209 100-125 (302)
379 3g5j_A Putative ATP/GTP bindin 47.1 38 0.0013 28.0 6.4 36 405-440 90-126 (134)
380 2ze6_A Isopentenyl transferase 47.1 8.9 0.00031 36.6 2.5 14 185-198 4-17 (253)
381 3kta_A Chromosome segregation 47.0 9.4 0.00032 34.0 2.5 23 184-208 28-50 (182)
382 1ye8_A Protein THEP1, hypothet 46.9 11 0.00036 34.0 2.8 23 184-208 2-24 (178)
383 1ry6_A Internal kinesin; kines 46.6 9.2 0.00031 38.8 2.6 18 181-198 82-101 (360)
384 3eme_A Rhodanese-like domain p 46.5 16 0.00056 29.1 3.7 37 403-439 55-91 (103)
385 1kht_A Adenylate kinase; phosp 46.3 9.8 0.00033 33.9 2.5 17 182-198 3-19 (192)
386 2ius_A DNA translocase FTSK; n 46.1 12 0.00042 39.8 3.6 27 181-208 166-192 (512)
387 3foj_A Uncharacterized protein 46.0 17 0.00057 28.9 3.6 37 403-439 55-91 (100)
388 4eun_A Thermoresistant glucoki 45.6 12 0.00041 34.0 3.1 18 181-198 28-45 (200)
389 1f2t_A RAD50 ABC-ATPase; DNA d 45.4 12 0.00041 32.5 2.8 15 184-198 25-39 (149)
390 1u0j_A DNA replication protein 45.3 30 0.001 33.3 5.9 42 155-199 74-121 (267)
391 2v9p_A Replication protein E1; 45.3 11 0.00037 37.3 2.8 26 181-208 125-150 (305)
392 1nij_A Hypothetical protein YJ 45.3 15 0.00052 36.3 4.0 14 184-197 6-19 (318)
393 3iwh_A Rhodanese-like domain p 44.6 18 0.00063 29.1 3.7 36 403-438 55-90 (103)
394 1tue_A Replication protein E1; 44.2 10 0.00035 35.2 2.3 16 183-198 59-74 (212)
395 1y63_A LMAJ004144AAA protein; 44.1 8.7 0.0003 34.5 1.8 18 181-198 9-26 (184)
396 4h1g_A Maltose binding protein 43.6 18 0.00062 40.3 4.6 25 175-199 454-480 (715)
397 2yan_A Glutaredoxin-3; oxidore 43.6 1.2E+02 0.004 23.9 9.0 55 405-459 17-77 (105)
398 1tf5_A Preprotein translocase 43.4 51 0.0017 37.2 8.1 51 226-280 435-487 (844)
399 3mm4_A Histidine kinase homolo 43.3 1.8E+02 0.0061 25.9 13.0 67 180-246 18-84 (206)
400 4a2w_A RIG-I, retinoic acid in 43.2 22 0.00074 41.1 5.4 71 404-478 296-377 (936)
401 3kb2_A SPBC2 prophage-derived 43.2 12 0.0004 32.7 2.5 15 184-198 3-17 (173)
402 1s96_A Guanylate kinase, GMP k 43.0 12 0.0004 35.0 2.5 18 180-197 14-31 (219)
403 3crm_A TRNA delta(2)-isopenten 42.8 10 0.00036 37.7 2.3 15 184-198 7-21 (323)
404 1um8_A ATP-dependent CLP prote 42.7 29 0.001 35.0 5.8 17 182-198 72-88 (376)
405 2ce2_X GTPase HRAS; signaling 42.7 1.4E+02 0.0049 24.7 11.0 22 184-210 5-26 (166)
406 3nwj_A ATSK2; P loop, shikimat 42.7 17 0.00057 34.7 3.6 19 180-198 46-64 (250)
407 1wv9_A Rhodanese homolog TT165 42.6 22 0.00075 27.7 3.8 35 405-439 54-88 (94)
408 2xxa_A Signal recognition part 42.3 35 0.0012 35.4 6.3 17 184-200 102-118 (433)
409 2og2_A Putative signal recogni 42.2 18 0.00062 36.6 4.0 25 183-209 158-182 (359)
410 3t15_A Ribulose bisphosphate c 42.1 11 0.00038 36.8 2.4 16 183-198 37-52 (293)
411 1u94_A RECA protein, recombina 42.1 17 0.00057 36.8 3.7 20 181-200 62-81 (356)
412 1m7g_A Adenylylsulfate kinase; 41.8 21 0.00073 32.6 4.2 30 168-198 12-41 (211)
413 2wci_A Glutaredoxin-4; redox-a 41.8 97 0.0033 26.2 8.1 66 387-458 23-94 (135)
414 1ly1_A Polynucleotide kinase; 41.8 12 0.00042 32.9 2.4 15 184-198 4-18 (181)
415 1knq_A Gluconate kinase; ALFA/ 41.7 13 0.00044 32.8 2.5 17 182-198 8-24 (175)
416 3uie_A Adenylyl-sulfate kinase 41.7 13 0.00044 33.8 2.6 18 181-198 24-41 (200)
417 2zj8_A DNA helicase, putative 41.0 44 0.0015 37.1 7.4 71 226-302 240-343 (720)
418 3fho_A ATP-dependent RNA helic 40.9 6.9 0.00024 41.7 0.7 69 226-304 360-432 (508)
419 2jtq_A Phage shock protein E; 40.4 55 0.0019 24.7 5.8 36 403-438 40-75 (85)
420 1htw_A HI0065; nucleotide-bind 40.3 12 0.0004 33.0 1.9 26 181-208 32-57 (158)
421 1in4_A RUVB, holliday junction 40.3 15 0.00052 36.5 3.1 16 183-198 52-67 (334)
422 4dzz_A Plasmid partitioning pr 40.0 36 0.0012 30.5 5.5 31 274-307 55-85 (206)
423 3vkg_A Dynein heavy chain, cyt 39.5 33 0.0011 44.7 6.5 48 152-200 873-924 (3245)
424 2f1r_A Molybdopterin-guanine d 39.1 9.2 0.00031 34.2 1.1 24 184-209 4-27 (171)
425 3q2s_C Cleavage and polyadenyl 39.1 28 0.00097 32.5 4.6 10 501-510 112-121 (229)
426 3d3q_A TRNA delta(2)-isopenten 39.0 13 0.00045 37.3 2.3 16 184-199 9-24 (340)
427 3asz_A Uridine kinase; cytidin 38.6 17 0.00058 33.1 2.9 15 183-197 7-21 (211)
428 2yka_B ORF57 protein, 52 kDa i 44.5 6.6 0.00023 22.3 0.0 12 2-13 8-19 (26)
429 3hix_A ALR3790 protein; rhodan 38.3 28 0.00097 27.9 3.9 36 404-439 52-88 (106)
430 1gvn_B Zeta; postsegregational 37.9 15 0.00052 35.7 2.6 16 183-198 34-49 (287)
431 3l9o_A ATP-dependent RNA helic 37.6 44 0.0015 39.3 6.8 64 404-478 227-296 (1108)
432 1z3i_X Similar to RAD54-like; 37.5 1.3E+02 0.0044 32.8 10.3 73 225-307 418-497 (644)
433 2bdt_A BH3686; alpha-beta prot 37.5 16 0.00054 32.7 2.4 14 184-197 4-17 (189)
434 1xjc_A MOBB protein homolog; s 37.4 30 0.001 30.8 4.2 14 184-197 6-19 (169)
435 3d1p_A Putative thiosulfate su 37.3 46 0.0016 28.0 5.4 37 403-439 90-127 (139)
436 3auy_A DNA double-strand break 37.1 17 0.00057 36.9 2.8 21 184-206 27-47 (371)
437 3eph_A TRNA isopentenyltransfe 37.1 14 0.00049 37.9 2.3 16 184-199 4-19 (409)
438 3qf7_A RAD50; ABC-ATPase, ATPa 37.1 17 0.00058 36.8 2.8 16 184-199 25-40 (365)
439 3con_A GTPase NRAS; structural 37.0 1.6E+02 0.0056 25.4 9.4 22 184-210 23-44 (190)
440 2r8r_A Sensor protein; KDPD, P 36.9 27 0.00091 32.8 3.9 18 184-201 8-25 (228)
441 1c9k_A COBU, adenosylcobinamid 36.9 18 0.00061 32.6 2.7 13 185-197 2-14 (180)
442 1zuh_A Shikimate kinase; alpha 36.6 12 0.00043 32.7 1.6 16 183-198 8-23 (168)
443 3lnc_A Guanylate kinase, GMP k 36.5 11 0.00039 35.1 1.3 19 180-198 25-43 (231)
444 1w36_B RECB, exodeoxyribonucle 36.4 41 0.0014 39.9 6.4 62 184-246 18-79 (1180)
445 3oaa_A ATP synthase subunit al 36.4 1.7E+02 0.0058 30.8 10.3 25 174-198 151-178 (513)
446 1nks_A Adenylate kinase; therm 36.3 17 0.00058 32.3 2.5 15 184-198 3-17 (194)
447 2qt1_A Nicotinamide riboside k 36.3 11 0.00037 34.5 1.1 21 178-198 17-37 (207)
448 3t61_A Gluconokinase; PSI-biol 36.3 17 0.00058 32.9 2.5 16 183-198 19-34 (202)
449 3qks_A DNA double-strand break 36.1 19 0.00066 32.9 2.8 24 184-209 25-48 (203)
450 2p6r_A Afuhel308 helicase; pro 36.1 52 0.0018 36.4 6.9 72 226-303 245-346 (702)
451 4akg_A Glutathione S-transfera 36.0 30 0.001 44.5 5.3 48 152-200 890-941 (2695)
452 3h1t_A Type I site-specific re 35.9 75 0.0026 34.1 8.0 77 225-307 441-527 (590)
453 1g8p_A Magnesium-chelatase 38 35.9 21 0.00071 35.4 3.3 17 182-198 45-61 (350)
454 2yvu_A Probable adenylyl-sulfa 35.9 29 0.00098 30.8 3.9 17 182-198 13-29 (186)
455 2fsx_A RV0390, COG0607: rhodan 35.7 44 0.0015 28.6 5.0 36 404-439 80-116 (148)
456 2ck3_D ATP synthase subunit be 35.7 1.5E+02 0.0053 30.9 9.8 24 174-197 142-168 (482)
457 2rhm_A Putative kinase; P-loop 35.5 18 0.00061 32.3 2.5 16 183-198 6-21 (193)
458 3e4c_A Caspase-1; zymogen, inf 35.4 47 0.0016 32.6 5.7 48 404-452 60-118 (302)
459 3lwd_A 6-phosphogluconolactona 35.4 73 0.0025 29.7 6.8 28 280-307 44-71 (226)
460 4fcw_A Chaperone protein CLPB; 35.3 19 0.00065 35.0 2.8 16 184-199 49-64 (311)
461 1via_A Shikimate kinase; struc 35.2 15 0.00051 32.4 1.8 15 184-198 6-20 (175)
462 2v54_A DTMP kinase, thymidylat 34.8 18 0.00061 32.7 2.4 17 182-198 4-20 (204)
463 3mwy_W Chromo domain-containin 34.7 1.5E+02 0.0052 33.2 10.6 73 225-307 574-653 (800)
464 2r2a_A Uncharacterized protein 34.6 20 0.00068 32.9 2.6 15 185-199 8-22 (199)
465 3f9v_A Minichromosome maintena 34.0 19 0.00064 39.2 2.7 14 184-197 329-342 (595)
466 3cm0_A Adenylate kinase; ATP-b 34.0 15 0.0005 32.7 1.6 17 182-198 4-20 (186)
467 3hjh_A Transcription-repair-co 33.7 1.6E+02 0.0055 30.8 9.9 114 375-496 18-149 (483)
468 2c95_A Adenylate kinase 1; tra 33.7 23 0.00079 31.6 3.0 18 181-198 8-25 (196)
469 3pxg_A Negative regulator of g 33.7 26 0.00089 36.8 3.7 18 182-199 201-218 (468)
470 4dsu_A GTPase KRAS, isoform 2B 33.5 2.2E+02 0.0076 24.2 9.7 22 184-210 6-27 (189)
471 1tev_A UMP-CMP kinase; ploop, 33.5 18 0.00061 32.2 2.1 16 183-198 4-19 (196)
472 2ck3_A ATP synthase subunit al 33.4 1.4E+02 0.0047 31.6 9.1 19 180-198 160-178 (510)
473 1wik_A Thioredoxin-like protei 33.2 1.4E+02 0.0049 23.6 7.6 47 404-450 14-66 (109)
474 1ak2_A Adenylate kinase isoenz 33.2 21 0.00072 33.3 2.6 17 182-198 16-32 (233)
475 3nhv_A BH2092 protein; alpha-b 33.1 35 0.0012 29.2 3.9 37 403-439 71-109 (144)
476 3flh_A Uncharacterized protein 33.0 26 0.0009 29.0 2.9 37 403-439 70-108 (124)
477 1ypw_A Transitional endoplasmi 33.0 21 0.00071 40.5 2.9 18 181-198 510-527 (806)
478 3h11_B Caspase-8; cell death, 32.9 80 0.0028 30.3 6.8 49 403-452 16-85 (271)
479 1z5z_A Helicase of the SNF2/RA 32.8 1.1E+02 0.0038 29.2 7.8 94 191-306 93-192 (271)
480 1np6_A Molybdopterin-guanine d 32.7 22 0.00074 31.8 2.5 14 184-197 8-21 (174)
481 1zd8_A GTP:AMP phosphotransfer 32.7 21 0.00071 33.1 2.5 17 182-198 7-23 (227)
482 2fz4_A DNA repair protein RAD2 32.6 56 0.0019 30.5 5.6 45 404-461 133-178 (237)
483 2k0z_A Uncharacterized protein 32.6 51 0.0017 26.5 4.6 37 403-439 55-91 (110)
484 2pez_A Bifunctional 3'-phospho 32.6 22 0.00076 31.4 2.6 17 182-198 5-21 (179)
485 1e6c_A Shikimate kinase; phosp 32.6 17 0.0006 31.7 1.8 16 183-198 3-18 (173)
486 2i3b_A HCR-ntpase, human cance 32.5 18 0.00062 32.8 2.0 25 183-209 2-26 (189)
487 1rz3_A Hypothetical protein rb 32.5 38 0.0013 30.7 4.2 15 184-198 24-38 (201)
488 1zu4_A FTSY; GTPase, signal re 32.4 32 0.0011 34.1 4.0 17 183-199 106-122 (320)
489 2fwr_A DNA repair protein RAD2 32.3 51 0.0017 34.2 5.8 61 404-477 133-197 (472)
490 2q5c_A NTRC family transcripti 32.3 2.8E+02 0.0095 24.9 11.9 125 404-539 4-140 (196)
491 1vt4_I APAF-1 related killer D 32.3 1.4E+02 0.0049 34.8 9.5 35 251-285 243-277 (1221)
492 3tif_A Uncharacterized ABC tra 32.2 18 0.00061 34.1 2.0 17 181-197 30-46 (235)
493 1cke_A CK, MSSA, protein (cyti 32.1 24 0.00082 32.4 2.8 16 183-198 6-21 (227)
494 1gmx_A GLPE protein; transfera 32.1 33 0.0011 27.5 3.3 37 403-439 57-94 (108)
495 2iyv_A Shikimate kinase, SK; t 31.9 19 0.00066 31.9 2.0 15 184-198 4-18 (184)
496 1pjr_A PCRA; DNA repair, DNA r 31.8 3.5E+02 0.012 29.8 12.8 50 385-436 333-383 (724)
497 2jaq_A Deoxyguanosine kinase; 31.6 22 0.00075 31.9 2.4 15 184-198 2-16 (205)
498 2fsf_A Preprotein translocase 31.5 55 0.0019 36.9 5.9 53 404-462 115-171 (853)
499 3fb4_A Adenylate kinase; psych 31.5 23 0.00077 32.4 2.5 15 184-198 2-16 (216)
500 2bwj_A Adenylate kinase 5; pho 31.4 24 0.00083 31.5 2.7 35 171-210 1-35 (199)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-73 Score=616.25 Aligned_cols=409 Identities=45% Similarity=0.799 Sum_probs=377.8
Q ss_pred CcccccccCCCcccCCCCcccccCCCCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCC
Q 007280 114 PVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGS 193 (609)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGs 193 (609)
.+.....++++|++|+++++++++.++|.++.+|++++|++.+.++|..++|.+|||+|+++||.+++++|+|++|+|||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGs 104 (434)
T 2db3_A 25 IFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGS 104 (434)
T ss_dssp HTSCCCCCCTTGGGGGGSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTS
T ss_pred HhhcCcccccChhhhcCceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCC
Confidence 33345578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcC
Q 007280 194 GKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERG 273 (609)
Q Consensus 194 GKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~ 273 (609)
|||++|++|++.+++..... ....+|.+|||+|||+||.|+++++++++...++++.+++||.....+...+..+
T Consensus 105 GKT~a~~lpil~~l~~~~~~-----~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~ 179 (434)
T 2db3_A 105 GKTAAFLLPILSKLLEDPHE-----LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRG 179 (434)
T ss_dssp SHHHHHHHHHHHHHHHSCCC-----CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHhcccc-----cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcC
Confidence 99999999999999875421 1123467999999999999999999999988889999999999999998888899
Q ss_pred CCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHh
Q 007280 274 VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF 353 (609)
Q Consensus 274 ~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~ 353 (609)
++|+|+||++|++++.+....+.++++|||||||+|++++|.+++..|+..+.+ +..+|+++||||++++++.++..+
T Consensus 180 ~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~--~~~~q~l~~SAT~~~~~~~~~~~~ 257 (434)
T 2db3_A 180 CHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM--RPEHQTLMFSATFPEEIQRMAGEF 257 (434)
T ss_dssp CSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS--CSSCEEEEEESCCCHHHHHHHHTT
T ss_pred CCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCC--CCCceEEEEeccCCHHHHHHHHHh
Confidence 999999999999999988888999999999999999999999999999998644 456899999999999999999999
Q ss_pred hcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEE
Q 007280 354 LANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATT 433 (609)
Q Consensus 354 l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ 433 (609)
+.+++.+.+.........+.+.+..+....|...|++++... ..++||||++++.++.+++.|...++++..
T Consensus 258 l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~--------~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~ 329 (434)
T 2db3_A 258 LKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ--------ADGTIVFVETKRGADFLASFLSEKEFPTTS 329 (434)
T ss_dssp CSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHC--------CTTEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhC--------CCCEEEEEeCcHHHHHHHHHHHhCCCCEEE
Confidence 999999999888888888999999998888988888888653 233999999999999999999999999999
Q ss_pred ecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEc-CCC
Q 007280 434 IHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN-ENN 512 (609)
Q Consensus 434 ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~-~~~ 512 (609)
+||++++.+|++++++|++|+.+|||||+++++|||||+|++||+||+|.++++|+||+|||||.|+.|.|++|++ +++
T Consensus 330 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~ 409 (434)
T 2db3_A 330 IHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKD 409 (434)
T ss_dssp ESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTC
T ss_pred EeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 568
Q ss_pred hhhHHHHHHHHHHhcccchHHHHHH
Q 007280 513 MSLARPLTELMQEANQEVPAWLNRY 537 (609)
Q Consensus 513 ~~~~~~l~~~l~~~~q~vp~~l~~~ 537 (609)
..++..|.++++++.|+||+||.++
T Consensus 410 ~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 410 RAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp GGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 8899999999999999999999764
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.3e-65 Score=546.02 Aligned_cols=406 Identities=62% Similarity=1.014 Sum_probs=363.2
Q ss_pred cccccCCCCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhh
Q 007280 132 PVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQ 211 (609)
Q Consensus 132 ~v~~~~~~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~ 211 (609)
++++++.++|.++.+|++++|++.+.+++..++|.+|||+|+++|+.+++++|++++||||||||++|++|++..+....
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 35667888999999999999999999999999999999999999999999999999999999999999999999887653
Q ss_pred cc--------cCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHH
Q 007280 212 YV--------QRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGR 283 (609)
Q Consensus 212 ~~--------~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~ 283 (609)
.. ......+..++++|||+||++|+.|++++++++....++++..++|+....++...+..+++|+|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence 21 0000112334679999999999999999999999888999999999999999988888899999999999
Q ss_pred HHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEec
Q 007280 284 LVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (609)
Q Consensus 284 L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~ 363 (609)
|.+++....+.+..+++|||||||++++++|.+.+..++..+..+.....|+++||||++.++..++..++.++..+.+.
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 99999988888999999999999999999999999999987655545578999999999999999999999999988888
Q ss_pred ccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHH
Q 007280 364 RVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQER 443 (609)
Q Consensus 364 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R 443 (609)
........+.+.+..+....+...+.+++... ....++||||++++.++.+++.|...++.+..+||++++.+|
T Consensus 242 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r 315 (417)
T 2i4i_A 242 RVGSTSENITQKVVWVEESDKRSFLLDLLNAT------GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 315 (417)
T ss_dssp ----CCSSEEEEEEECCGGGHHHHHHHHHHTC------CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred CCCCCccCceEEEEEeccHhHHHHHHHHHHhc------CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHH
Confidence 77777788888888888888888877777643 236789999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHH
Q 007280 444 ELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELM 523 (609)
Q Consensus 444 ~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l 523 (609)
.++++.|++|+.+|||||+++++|||+|++++||+||+|.++.+|+||+||+||.|++|.|++|+++.+...++.|.+++
T Consensus 316 ~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~ 395 (417)
T 2i4i_A 316 EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLL 395 (417)
T ss_dssp HHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccchHHHHHHHhhccC
Q 007280 524 QEANQEVPAWLNRYASRANY 543 (609)
Q Consensus 524 ~~~~q~vp~~l~~~a~~~~~ 543 (609)
....+++|.||.+++....+
T Consensus 396 ~~~~~~~~~~l~~~~~~~~~ 415 (417)
T 2i4i_A 396 VEAKQEVPSWLENMAYEHHY 415 (417)
T ss_dssp HHTTCCCCHHHHHHHTCSCC
T ss_pred HHhcCcCCHHHHHHHHhhhc
Confidence 99999999999999976544
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=8.1e-61 Score=512.68 Aligned_cols=372 Identities=34% Similarity=0.562 Sum_probs=336.9
Q ss_pred CcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCc
Q 007280 141 PPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSR 220 (609)
Q Consensus 141 p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~ 220 (609)
+.+..+|++++|++.+.+.+..++|.+|+|+|+++|+.+++++|++++++||+|||++|++|+++.+....
T Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------- 103 (410)
T 2j0s_A 33 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV--------- 103 (410)
T ss_dssp CCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS---------
T ss_pred ccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc---------
Confidence 44567899999999999999999999999999999999999999999999999999999999987664221
Q ss_pred cccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEE
Q 007280 221 TVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 221 ~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
..+.+|||+||++|+.|++++++++....++++..++|+.....+...+..+++|+|+||++|.+++.+....+..+++
T Consensus 104 -~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~ 182 (410)
T 2j0s_A 104 -RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKM 182 (410)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred -CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeE
Confidence 1235999999999999999999999988899999999999999988888889999999999999999988788899999
Q ss_pred EEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEe
Q 007280 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH 380 (609)
Q Consensus 301 lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~ 380 (609)
|||||||+|++++|...+..++..+ +...|+++||||++.++.+++..++.++..+.+.........+.+.+..+.
T Consensus 183 vViDEah~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (410)
T 2j0s_A 183 LVLDEADEMLNKGFKEQIYDVYRYL----PPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVE 258 (410)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHTTS----CTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEES
T ss_pred EEEccHHHHHhhhhHHHHHHHHHhC----ccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeC
Confidence 9999999999999999999998877 667899999999999999988889989888877766667777888877776
Q ss_pred ccc-hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEE
Q 007280 381 ESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 459 (609)
Q Consensus 381 ~~~-k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILV 459 (609)
... +...+.+++.... ..++||||++++.++.+++.|...++.+..+||++++.+|+++++.|++|+.+|||
T Consensus 259 ~~~~k~~~l~~~~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 331 (410)
T 2j0s_A 259 REEWKFDTLCDLYDTLT-------ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 331 (410)
T ss_dssp STTHHHHHHHHHHHHHT-------SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEE
T ss_pred cHHhHHHHHHHHHHhcC-------CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEE
Confidence 554 6667777666542 56899999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcccchHH
Q 007280 460 ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVPAW 533 (609)
Q Consensus 460 aT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~vp~~ 533 (609)
||+++++|||+|++++||+||+|+++..|+||+||+||.|++|.|++|+++.+...++.+.+++....+++|..
T Consensus 332 ~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 332 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp ECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred ECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999888877777743
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.9e-59 Score=499.01 Aligned_cols=377 Identities=33% Similarity=0.544 Sum_probs=320.6
Q ss_pred CCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCC
Q 007280 140 VPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219 (609)
Q Consensus 140 ~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~ 219 (609)
.+....+|+++++++.+.+.+..++|.+|+|+|+++|+.++++++++++++||+|||++|++|+++.+.....
T Consensus 35 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~------- 107 (414)
T 3eiq_A 35 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLK------- 107 (414)
T ss_dssp CCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSC-------
T ss_pred ccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCC-------
Confidence 3455678999999999999999999999999999999999999999999999999999999999987654321
Q ss_pred ccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh-cCCCEEEeChHHHHHHHHcccccccce
Q 007280 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE-RGVDILVATPGRLVDLLERARVSLQMI 298 (609)
Q Consensus 220 ~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tpg~L~~~l~~~~~~l~~i 298 (609)
.+.+|||+||++|+.|++++++++....++.+..++++.....+...+. ..++|+|+||++|++++......+..+
T Consensus 108 ---~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~ 184 (414)
T 3eiq_A 108 ---ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 184 (414)
T ss_dssp ---SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTC
T ss_pred ---ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 2349999999999999999999999888999999999998888877776 678999999999999999888888999
Q ss_pred EEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEE
Q 007280 299 RYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEF 378 (609)
Q Consensus 299 ~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~ 378 (609)
++|||||||++++++|...+..++..+ +...|+++||||++.++..++..++.++..+.+.........+.+.+..
T Consensus 185 ~~vViDEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (414)
T 3eiq_A 185 KMFVLDEADEMLSRGFKDQIYDIFQKL----NSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN 260 (414)
T ss_dssp CEEEECSHHHHHHTTTHHHHHHHHTTS----CTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEE
T ss_pred cEEEEECHHHhhccCcHHHHHHHHHhC----CCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEE
Confidence 999999999999999999999998887 5678999999999999999999999999888777766677777777766
Q ss_pred Eeccc-hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcE
Q 007280 379 VHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPI 457 (609)
Q Consensus 379 ~~~~~-k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~I 457 (609)
+.... +...+.+++... ...++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+.+|
T Consensus 261 ~~~~~~~~~~l~~~~~~~-------~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 333 (414)
T 3eiq_A 261 VEREEWKLDTLCDLYETL-------TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 333 (414)
T ss_dssp CSSSTTHHHHHHHHHHSS-------CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---C
T ss_pred eChHHhHHHHHHHHHHhC-------CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcE
Confidence 65544 555555555432 2567999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcccchHHHHHH
Q 007280 458 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVPAWLNRY 537 (609)
Q Consensus 458 LVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~ 537 (609)
||||+++++|||+|++++||+||+|.++.+|+||+||+||.|++|.|++|+++.+...++.+.++++...+++|..+.++
T Consensus 334 lv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 334 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp EEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred EEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887764
No 5
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.8e-57 Score=505.39 Aligned_cols=364 Identities=31% Similarity=0.508 Sum_probs=305.7
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHhhHh--CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEE
Q 007280 152 LGEALNLNIRRCKYVKPTPVQRHAIPISI--GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALIL 229 (609)
Q Consensus 152 l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~--~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil 229 (609)
|++.+.+.+..++|.+|||+|+++|+.++ .++|+|++||||||||++|++|+++.+....... ...+++|||
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~------~~~~~~lil 152 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS------QYMVKAVIV 152 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS------TTSCCEEEE
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccc------cCCeeEEEE
Confidence 99999999999999999999999999999 6789999999999999999999999998764321 223569999
Q ss_pred cCcHHHHHHHHHHHHHhhcc----CCeEEEEEECCcChHHHHHHHh-cCCCEEEeChHHHHHHHHcc-cccccceEEEEe
Q 007280 230 APTRELSSQIHVEAKKFSYQ----TGVKVVVAYGGAPINQQLRELE-RGVDILVATPGRLVDLLERA-RVSLQMIRYLAL 303 (609)
Q Consensus 230 ~Ptr~La~Qi~~~~~~~~~~----~~i~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tpg~L~~~l~~~-~~~l~~i~~lVl 303 (609)
+||++||.|++++++++... ..+.+..++|+.....+...+. .+++|+|+||++|++++.+. ...++.+++|||
T Consensus 153 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 153 APTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 99999999999999997532 3467888899998888877764 47999999999999998775 345788999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcC---CCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccC----CcccceeEEE
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMD---MPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVG----SSTDLIVQRV 376 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~---~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~----~~~~~i~q~~ 376 (609)
||||+|++++|.+.+..|+..+. .......|+++||||+++.+..++..++.++..+.+.... .....+.+.+
T Consensus 233 DEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (563)
T 3i5x_A 233 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 312 (563)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred eCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEE
Confidence 99999999999999999887762 2224468999999999999999999998887666554322 2334455555
Q ss_pred EEEecc-chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC---CCCcEEecCccCHHHHHHHHHhhhc
Q 007280 377 EFVHES-DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN---GFPATTIHGDRTQQERELALRSFKS 452 (609)
Q Consensus 377 ~~~~~~-~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~---~~~~~~ihg~~~~~~R~~~~~~F~~ 452 (609)
...... .+...+++.+....... ....++||||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|++
T Consensus 313 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 390 (563)
T 3i5x_A 313 VISEKFANSIFAAVEHIKKQIKER--DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK 390 (563)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHT--TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH
T ss_pred EECchhHhhHHHHHHHHHHHHhhc--CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc
Confidence 555432 33334444444433321 23678999999999999999999876 8999999999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHH
Q 007280 453 GKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELM 523 (609)
Q Consensus 453 g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l 523 (609)
|+.+|||||+++++|||+|+|++||+||+|.++++|+||+|||||.|+.|.|++|+++.+..+++.|.+.+
T Consensus 391 g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 391 DESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp CSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred CCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988888776654
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.5e-57 Score=485.48 Aligned_cols=373 Identities=32% Similarity=0.513 Sum_probs=328.0
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcc
Q 007280 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (609)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~ 221 (609)
.+..+|++++|++.+.+++..++|.+|+|+|+++|+.+++++++++++|||+|||++|++|++..+....
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~---------- 87 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL---------- 87 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS----------
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc----------
Confidence 3456799999999999999999999999999999999999999999999999999999999987764321
Q ss_pred ccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 222 ~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
..+++|||+||++|+.|++++++++....++++..++|+.....+...+...++|+|+||++|.+++......+.++++|
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~v 167 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLF 167 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEE
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEE
Confidence 12349999999999999999999999888899999999999888877777889999999999999998877788999999
Q ss_pred EeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEec
Q 007280 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE 381 (609)
Q Consensus 302 VlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~ 381 (609)
||||||++++..|...+..++..+ +...|+++||||++..+..++..++..+..+.... ......+.+.+..+..
T Consensus 168 IiDEaH~~~~~~~~~~~~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 242 (400)
T 1s2m_A 168 IMDEADKMLSRDFKTIIEQILSFL----PPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEE 242 (400)
T ss_dssp EEESHHHHSSHHHHHHHHHHHTTS----CSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCG
T ss_pred EEeCchHhhhhchHHHHHHHHHhC----CcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEech
Confidence 999999999888888888887766 56789999999999999999888888776554432 2344566777777777
Q ss_pred cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEc
Q 007280 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVAT 461 (609)
Q Consensus 382 ~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT 461 (609)
..|...+.+++... ...++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+.+|||||
T Consensus 243 ~~k~~~l~~~~~~~-------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T 315 (400)
T 1s2m_A 243 RQKLHCLNTLFSKL-------QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS 315 (400)
T ss_dssp GGHHHHHHHHHHHS-------CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES
T ss_pred hhHHHHHHHHHhhc-------CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc
Confidence 77777766666542 25689999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcccchHHHHH
Q 007280 462 DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVPAWLNR 536 (609)
Q Consensus 462 ~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~vp~~l~~ 536 (609)
+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.|++|+++.+...++.|.+.+....+++|.++.+
T Consensus 316 ~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 316 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp SCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred CccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999998888888888777888776543
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5e-56 Score=472.00 Aligned_cols=369 Identities=31% Similarity=0.500 Sum_probs=323.0
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccc
Q 007280 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (609)
Q Consensus 145 ~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~ 224 (609)
.+|++++|++.+.+.+..++|.+|+|+|+++|+.+++++++++++|||+|||++|++|++..+.... ..+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----------~~~ 77 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT----------GQV 77 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT----------TCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC----------CCe
Confidence 4699999999999999999999999999999999999999999999999999999999987764321 123
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccC-CeEEEEEECCcChHHHHHHHhcC-CCEEEeChHHHHHHHHcccccccceEEEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERG-VDILVATPGRLVDLLERARVSLQMIRYLA 302 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~-~~IlV~Tpg~L~~~l~~~~~~l~~i~~lV 302 (609)
.+||++||++|+.|++++++++.... ++++..++|+.....+...+..+ ++|+|+||++|.+++......+..+++||
T Consensus 78 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vV 157 (391)
T 1xti_A 78 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 157 (391)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEE
T ss_pred eEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEE
Confidence 49999999999999999999997665 78999999999887777766654 79999999999999988877889999999
Q ss_pred eccchhhhh-cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccC-CcccceeEEEEEEe
Q 007280 303 LDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVG-SSTDLIVQRVEFVH 380 (609)
Q Consensus 303 lDEah~~l~-~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~-~~~~~i~q~~~~~~ 380 (609)
+||||++++ .+|...+..++..+ +...|+++||||++..+..++..++.++..+...... .....+.+.+..+.
T Consensus 158 iDEaH~~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (391)
T 1xti_A 158 LDECDKMLEQLDMRRDVQEIFRMT----PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK 233 (391)
T ss_dssp ECSHHHHTSSHHHHHHHHHHHHTS----CSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECC
T ss_pred EeCHHHHhhccchHHHHHHHHhhC----CCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcC
Confidence 999999987 46778888888766 5678999999999999999999999888777665433 23455667777777
Q ss_pred ccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEE
Q 007280 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA 460 (609)
Q Consensus 381 ~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVa 460 (609)
...+...+.+++... ...++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++++.+||||
T Consensus 234 ~~~~~~~l~~~l~~~-------~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 306 (391)
T 1xti_A 234 DNEKNRKLFDLLDVL-------EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA 306 (391)
T ss_dssp GGGHHHHHHHHHHHS-------CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEE
T ss_pred chhHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 778877777777653 2678999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCC-ChhhHHHHHHHHHHhcccchHHH
Q 007280 461 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEN-NMSLARPLTELMQEANQEVPAWL 534 (609)
Q Consensus 461 T~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~-~~~~~~~l~~~l~~~~q~vp~~l 534 (609)
|+++++|+|+|++++||+|++|+++..|+||+||+||.|++|.|++|+++. +..+++.+.+.+....+++|..+
T Consensus 307 T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (391)
T 1xti_A 307 TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 381 (391)
T ss_dssp SCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCC
T ss_pred CChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccc
Confidence 999999999999999999999999999999999999999999999999875 45667778888777777777653
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.6e-56 Score=496.59 Aligned_cols=363 Identities=31% Similarity=0.513 Sum_probs=305.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHhhHh--CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEE
Q 007280 152 LGEALNLNIRRCKYVKPTPVQRHAIPISI--GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALIL 229 (609)
Q Consensus 152 l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~--~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil 229 (609)
|++.+.+.+..++|..|||+|+++|+.++ .++|+|++||||+|||++|++|+++.+....... ...+.+|||
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~------~~~~~~lvl 101 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS------QYMVKAVIV 101 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS------TTSCCEEEE
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccc------cCCCeEEEE
Confidence 99999999999999999999999999999 7889999999999999999999999988764221 223569999
Q ss_pred cCcHHHHHHHHHHHHHhhc----cCCeEEEEEECCcChHHHHHHHhc-CCCEEEeChHHHHHHHHcc-cccccceEEEEe
Q 007280 230 APTRELSSQIHVEAKKFSY----QTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERA-RVSLQMIRYLAL 303 (609)
Q Consensus 230 ~Ptr~La~Qi~~~~~~~~~----~~~i~~~~~~gg~~~~~~~~~l~~-~~~IlV~Tpg~L~~~l~~~-~~~l~~i~~lVl 303 (609)
+||++|+.|++++++++.. ...+.+..++|+.....+...+.. +++|+|+||++|++++.+. ...+..+++|||
T Consensus 102 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lVi 181 (579)
T 3sqw_A 102 APTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181 (579)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEE
Confidence 9999999999999999863 235678888999998888877754 7999999999999999875 446788999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcC---CCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEeccc----CCcccceeEEE
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMD---MPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRV----GSSTDLIVQRV 376 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~---~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~----~~~~~~i~q~~ 376 (609)
||||+|++++|.+.+..|+..+. ...+..+|+++||||+++.+..++..++.++..+.+... ......+.+.+
T Consensus 182 DEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (579)
T 3sqw_A 182 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 261 (579)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred EChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEE
Confidence 99999999999999998887763 222346799999999999999999999988766655432 22334555555
Q ss_pred EEEecc-chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC---CCCcEEecCccCHHHHHHHHHhhhc
Q 007280 377 EFVHES-DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN---GFPATTIHGDRTQQERELALRSFKS 452 (609)
Q Consensus 377 ~~~~~~-~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~---~~~~~~ihg~~~~~~R~~~~~~F~~ 452 (609)
...... .+...+++.+....... ....++||||++++.++.+++.|... ++.+..+||+|++.+|+++++.|++
T Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~ 339 (579)
T 3sqw_A 262 VISEKFANSIFAAVEHIKKQIKER--DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK 339 (579)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHT--TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEecchhhhHHHHHHHHHHHHhhc--CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc
Confidence 555442 33334444444443321 23678999999999999999999876 8999999999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHH
Q 007280 453 GKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTEL 522 (609)
Q Consensus 453 g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~ 522 (609)
|+.+|||||+++++|||+|+|++||+||+|.+++.|+||+|||||.|+.|.|++|+++.+..+++.|.+.
T Consensus 340 g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 409 (579)
T 3sqw_A 340 DESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 409 (579)
T ss_dssp CSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred CCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888777766543
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.9e-57 Score=483.30 Aligned_cols=374 Identities=33% Similarity=0.542 Sum_probs=186.5
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcc
Q 007280 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (609)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~ 221 (609)
++..+|++++|++.+.+.+..++|.+|+|+|+++++.+++++++++++|||+|||++|++|++..+....
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~---------- 87 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV---------- 87 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC----------
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC----------
Confidence 4456799999999999999999999999999999999999999999999999999999999998764432
Q ss_pred ccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 222 ~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
..+.+|||+||++|+.|++++++++....++++..++|+....++...+. .++|+|+||++|.+.+......+..+++|
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~v 166 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMF 166 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEE
Confidence 12459999999999999999999998888899999999998777666555 58999999999999998887788899999
Q ss_pred EeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEec
Q 007280 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE 381 (609)
Q Consensus 302 VlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~ 381 (609)
|+||||++++++|...+..++..+ +...|+++||||+++.+.++...++.++..+.+.........+.+.+..+..
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLL----PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEE 242 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHS----CTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------
T ss_pred EEEChHHhhCCCcHHHHHHHHHhC----CCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCc
Confidence 999999999999999999999888 5678999999999999999999999988887776555555555555544443
Q ss_pred cc-hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEE
Q 007280 382 SD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA 460 (609)
Q Consensus 382 ~~-k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVa 460 (609)
.. +...+.+++... ...++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+.+||||
T Consensus 243 ~~~~~~~l~~~~~~~-------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 315 (394)
T 1fuu_A 243 EEYKYECLTDLYDSI-------SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 315 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHhcC-------CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEE
Confidence 33 444555554432 2567999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcccchHHHHHH
Q 007280 461 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEVPAWLNRY 537 (609)
Q Consensus 461 T~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~ 537 (609)
|+++++|+|+|++++||+|++|+++.+|+||+||+||.|++|.|++|+++++...++.|.+++....+++|..+.++
T Consensus 316 T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 392 (394)
T 1fuu_A 316 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATL 392 (394)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888877654
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.8e-55 Score=469.36 Aligned_cols=368 Identities=30% Similarity=0.482 Sum_probs=315.7
Q ss_pred CcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCC--CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCC
Q 007280 141 PPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218 (609)
Q Consensus 141 p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~--~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~ 218 (609)
..+..+|++++|++.+.+.+..++|.+|+|+|.++|+.++++ +++++++|||+|||++|++|++..+.....
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~------ 94 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK------ 94 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSC------
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCC------
Confidence 456788999999999999999999999999999999999987 999999999999999999999987754321
Q ss_pred CccccceEEEEcCcHHHHHHHHHHHHHhhcc-CCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHc-cccccc
Q 007280 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQ 296 (609)
Q Consensus 219 ~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~-~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~-~~~~l~ 296 (609)
.+++|||+||++|+.|+++.++++... .++.+....++....... ...++|+|+||++|.+++.+ ..+.+.
T Consensus 95 ----~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~ 167 (412)
T 3fht_A 95 ----YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPK 167 (412)
T ss_dssp ----SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGG
T ss_pred ----CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChh
Confidence 245999999999999999999998765 367777777776543221 33579999999999999866 455788
Q ss_pred ceEEEEeccchhhhh-cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEE
Q 007280 297 MIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQR 375 (609)
Q Consensus 297 ~i~~lVlDEah~~l~-~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~ 375 (609)
++++|||||||++++ .+|...+..+...+ +...|+++||||++..+..++..++.++..+.+.........+.+.
T Consensus 168 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (412)
T 3fht_A 168 KIKVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQY 243 (412)
T ss_dssp GCCEEEEETHHHHHSTTTTHHHHHHHHHTS----CTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEE
T ss_pred hCcEEEEeCHHHHhhcCCcHHHHHHHHhhC----CCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEE
Confidence 999999999999997 67888888888877 5678999999999999999999999999888887777777777777
Q ss_pred EEEEec-cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCC
Q 007280 376 VEFVHE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK 454 (609)
Q Consensus 376 ~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~ 454 (609)
+..+.. ..+...+.+++... ...++||||++++.++.+++.|...++.+..+||+|++.+|.++++.|++|+
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~-------~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 316 (412)
T 3fht_A 244 YVLCSSRDEKFQALCNLYGAI-------TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 316 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHHH-------SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS
T ss_pred EEEcCChHHHHHHHHHHHhhc-------CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC
Confidence 766654 34555555555543 2568999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccccccCCCCCCccEEEEcCCC------CCHHHHHHHhhhcccCCCCceEEEEEcCCC-hhhHHHHHHHHHHhc
Q 007280 455 TPILVATDVAARGLDIPHVAHVVNFDLP------NDIDDYVHRIGRTGRAGKSGLATAFFNENN-MSLARPLTELMQEAN 527 (609)
Q Consensus 455 ~~ILVaT~v~~~GlDip~v~~VI~~d~p------~s~~~y~QriGRagR~g~~G~~~~f~~~~~-~~~~~~l~~~l~~~~ 527 (609)
.+|||||+++++|||+|++++||+||+| .+..+|+||+||+||.|+.|.|++|++..+ ...++.+.+.+....
T Consensus 317 ~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~ 396 (412)
T 3fht_A 317 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKI 396 (412)
T ss_dssp CSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCC
T ss_pred CcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCcc
Confidence 9999999999999999999999999999 467999999999999999999999998764 777888888887776
Q ss_pred ccchH
Q 007280 528 QEVPA 532 (609)
Q Consensus 528 q~vp~ 532 (609)
++++.
T Consensus 397 ~~~~~ 401 (412)
T 3fht_A 397 ERLDT 401 (412)
T ss_dssp EEC--
T ss_pred ccCCC
Confidence 66653
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.3e-55 Score=459.40 Aligned_cols=358 Identities=37% Similarity=0.604 Sum_probs=317.5
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCC-CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 145 ~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~-~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
.+|++++|++.+.+.+..++|.+|+|+|+++|+.++++ +++++++|||+|||++|++|++..+.... .
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~-----------~ 74 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN-----------G 74 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSS-----------S
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccC-----------C
Confidence 46999999999999999999999999999999999987 79999999999999999999987654321 2
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEe
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
+.+||++||++|+.|++++++++....++++..++|+.....+...+. .++|+|+||++|.+++......+.++++||+
T Consensus 75 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 75 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 349999999999999999999998888899999999998877766665 6899999999999999888778899999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccc
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~ 383 (609)
||||++.+++|...+..++..+ +...++++||||++.++..++..++.++.++.... ...+.+.+..+....
T Consensus 154 DEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 225 (367)
T 1hv8_A 154 DEADEMLNMGFIKDVEKILNAC----NKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENE 225 (367)
T ss_dssp ETHHHHHTTTTHHHHHHHHHTS----CSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGG
T ss_pred eCchHhhhhchHHHHHHHHHhC----CCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHH
Confidence 9999999999999999998877 56789999999999999999998888877665432 235666666667777
Q ss_pred hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccc
Q 007280 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 463 (609)
Q Consensus 384 k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v 463 (609)
+...+.+++. ....++||||++++.++.+++.|...++.+..+||++++.+|+++++.|++++.+|||||++
T Consensus 226 ~~~~l~~~l~--------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 297 (367)
T 1hv8_A 226 RFEALCRLLK--------NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV 297 (367)
T ss_dssp HHHHHHHHHC--------STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT
T ss_pred HHHHHHHHHh--------cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECCh
Confidence 7766666654 23677999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcccc
Q 007280 464 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQEV 530 (609)
Q Consensus 464 ~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q~v 530 (609)
+++|+|+|++++||++++|+++.+|+||+||++|.|++|.|++|+++.+...+..|.+.+....+++
T Consensus 298 ~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 298 MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred hhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCcee
Confidence 9999999999999999999999999999999999999999999999999988888888776655544
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=7.2e-55 Score=463.09 Aligned_cols=357 Identities=33% Similarity=0.530 Sum_probs=305.0
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCC--CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCc
Q 007280 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSR 220 (609)
Q Consensus 143 ~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~--~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~ 220 (609)
...+|++++|++.+.+.+..++|.+|+|+|+++|+.++++ +++++++|||+|||++|++|++..+....
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------- 73 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED--------- 73 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC---------
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC---------
Confidence 4578999999999999999999999999999999999987 99999999999999999999998764332
Q ss_pred cccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEE
Q 007280 221 TVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 221 ~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
..+.+|||+||++|+.|++++++++....++.+...+++..... ....++|+|+||++|.+++......+.++++
T Consensus 74 -~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 148 (395)
T 3pey_A 74 -ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKI 148 (395)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCE
T ss_pred -CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCE
Confidence 12349999999999999999999998888888888887754322 1236899999999999999888778999999
Q ss_pred EEeccchhhhh-cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEE
Q 007280 301 LALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFV 379 (609)
Q Consensus 301 lVlDEah~~l~-~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~ 379 (609)
||+||||++.+ .+|...+..+...+ +...|+++||||+++.+..++..++.++..+...........+.+.+..+
T Consensus 149 iIiDEah~~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (395)
T 3pey_A 149 FVLDEADNMLDQQGLGDQCIRVKRFL----PKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC 224 (395)
T ss_dssp EEEETHHHHHHSTTHHHHHHHHHHTS----CTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEEC
T ss_pred EEEEChhhhcCccccHHHHHHHHHhC----CCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEc
Confidence 99999999998 67888888888877 56789999999999999999999998888877766666666676666555
Q ss_pred ecc-chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEE
Q 007280 380 HES-DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPIL 458 (609)
Q Consensus 380 ~~~-~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~IL 458 (609)
... .+...+.+++... ...++||||++++.++.+++.|...++.+..+||++++.+|+++++.|++|+.+||
T Consensus 225 ~~~~~~~~~l~~~~~~~-------~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 297 (395)
T 3pey_A 225 KNEADKFDVLTELYGLM-------TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVL 297 (395)
T ss_dssp SSHHHHHHHHHHHHTTT-------TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEE
T ss_pred CchHHHHHHHHHHHHhc-------cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEE
Confidence 433 3333333333211 36789999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEcCCCC------CHHHHHHHhhhcccCCCCceEEEEEcCC-ChhhHHHHHHHHH
Q 007280 459 VATDVAARGLDIPHVAHVVNFDLPN------DIDDYVHRIGRTGRAGKSGLATAFFNEN-NMSLARPLTELMQ 524 (609)
Q Consensus 459 VaT~v~~~GlDip~v~~VI~~d~p~------s~~~y~QriGRagR~g~~G~~~~f~~~~-~~~~~~~l~~~l~ 524 (609)
|||+++++|||+|++++||+||+|+ ++.+|+||+||+||.|++|.|++|+++. +....+.+.+.+.
T Consensus 298 v~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 298 ITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp EECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred EECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 9999999999999999999999999 9999999999999999999999999864 4455555665554
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.3e-56 Score=488.16 Aligned_cols=366 Identities=30% Similarity=0.485 Sum_probs=174.6
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCC--CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCC
Q 007280 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219 (609)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~--~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~ 219 (609)
.+..+|++++|++.+.+.|..++|.+|||+|.++|+.++.+ +++|++|+||||||++|++|++..+....
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-------- 160 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-------- 160 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS--------
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC--------
Confidence 34678999999999999999999999999999999999986 99999999999999999999997764332
Q ss_pred ccccceEEEEcCcHHHHHHHHHHHHHhhcc-CCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHc-ccccccc
Q 007280 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQM 297 (609)
Q Consensus 220 ~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~-~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~-~~~~l~~ 297 (609)
..+++|||+||++|+.|+++.++++... ..+.+.+.+++....... ...++|+|+||++|++++.+ ..+.+.+
T Consensus 161 --~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 161 --KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp --CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred --CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 2345999999999999999999998764 357777777776533221 23579999999999999976 4457899
Q ss_pred eEEEEeccchhhhh-cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEE
Q 007280 298 IRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRV 376 (609)
Q Consensus 298 i~~lVlDEah~~l~-~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~ 376 (609)
+++|||||||+|++ .+|...+..++..+ +..+|+|+||||++.++..++..++.++..+.+.........+.+.+
T Consensus 236 ~~~iViDEah~~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 311 (479)
T 3fmp_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYY 311 (479)
T ss_dssp CCEEEECCHHHHHTSTTHHHHHHHHHTTS----CTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------
T ss_pred CCEEEEECHHHHhhcCCcHHHHHHHHhhC----CccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEE
Confidence 99999999999997 67888888887776 56789999999999999999999999998888877766677777777
Q ss_pred EEEec-cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCC
Q 007280 377 EFVHE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT 455 (609)
Q Consensus 377 ~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~ 455 (609)
..+.. ..+...|..++.... ..++||||++++.++.+++.|...++.+..+||++++.+|+.+++.|++|+.
T Consensus 312 ~~~~~~~~~~~~l~~~~~~~~-------~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~ 384 (479)
T 3fmp_B 312 VLCSSRDEKFQALCNLYGAIT-------IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 384 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeCCHHHHHHHHHHHHhhcc-------CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 66654 345555555554332 5679999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCccEEEEcCCCC------CHHHHHHHhhhcccCCCCceEEEEEcCCC-hhhHHHHHHHHHHhcc
Q 007280 456 PILVATDVAARGLDIPHVAHVVNFDLPN------DIDDYVHRIGRTGRAGKSGLATAFFNENN-MSLARPLTELMQEANQ 528 (609)
Q Consensus 456 ~ILVaT~v~~~GlDip~v~~VI~~d~p~------s~~~y~QriGRagR~g~~G~~~~f~~~~~-~~~~~~l~~~l~~~~q 528 (609)
+|||||+++++|||+|+|++||+||+|. +..+|+||+|||||.|+.|.|++|++..+ ..+++.|.+.+....+
T Consensus 385 ~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~ 464 (479)
T 3fmp_B 385 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIE 464 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCce
Confidence 9999999999999999999999999995 66899999999999999999999998654 7778888888776666
Q ss_pred cch
Q 007280 529 EVP 531 (609)
Q Consensus 529 ~vp 531 (609)
+++
T Consensus 465 ~l~ 467 (479)
T 3fmp_B 465 RLD 467 (479)
T ss_dssp ---
T ss_pred ECC
Confidence 554
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.2e-52 Score=433.23 Aligned_cols=335 Identities=36% Similarity=0.591 Sum_probs=287.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcC
Q 007280 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (609)
Q Consensus 152 l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 231 (609)
|++.+.+.++.++|.+|+|+|+++++.+++++++++++|||+|||++|++|++.. . ..+|||+|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~------------~~~liv~P 64 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----G------------MKSLVVTP 64 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----T------------CCEEEECS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----c------------CCEEEEeC
Confidence 5789999999999999999999999999999999999999999999999998753 1 23999999
Q ss_pred cHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhh
Q 007280 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD 311 (609)
Q Consensus 232 tr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~ 311 (609)
|++|+.|++++++++....++++..++|+.....+...+.. ++|+|+||++|.+++......+.++++||+||||++.+
T Consensus 65 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 65 TRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc
Confidence 99999999999999988888999999999988777766654 89999999999999988777789999999999999999
Q ss_pred cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHH
Q 007280 312 MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDL 391 (609)
Q Consensus 312 ~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~ 391 (609)
++|...+..++..+ +...++++||||++..+......++.++..+... .....+.+.+..+....+ ..++.
T Consensus 144 ~~~~~~~~~~~~~~----~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~ 214 (337)
T 2z0m_A 144 MGFIDDIKIILAQT----SNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWR--SKVQA 214 (337)
T ss_dssp TTCHHHHHHHHHHC----TTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSH--HHHHH
T ss_pred cccHHHHHHHHhhC----CcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHH--HHHHH
Confidence 99999999999887 5668899999999999999999998887766432 223345554444443322 22333
Q ss_pred HHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCC
Q 007280 392 LHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIP 471 (609)
Q Consensus 392 l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip 471 (609)
+.. ....++||||++++.++.+++.|. .+..+||++++.+|.+++++|++|+.+|||||+++++|+|+|
T Consensus 215 ~~~-------~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~ 283 (337)
T 2z0m_A 215 LRE-------NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIP 283 (337)
T ss_dssp HHT-------CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCC
T ss_pred HHh-------CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCcc
Confidence 321 236789999999999999998885 678999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHH
Q 007280 472 HVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQ 524 (609)
Q Consensus 472 ~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~ 524 (609)
++++||+|++|+++.+|+||+||+||.|++|.|++|+. .+....+.+.+.++
T Consensus 284 ~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 284 LVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp CBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred CCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999 78778887777664
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.1e-50 Score=446.93 Aligned_cols=343 Identities=15% Similarity=0.271 Sum_probs=274.5
Q ss_pred ccCCCCHHHHHHHHH-CCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceE
Q 007280 148 AEIDLGEALNLNIRR-CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLA 226 (609)
Q Consensus 148 ~~~~l~~~l~~~i~~-~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~ 226 (609)
.++++++.+.+.|+. ++|..|+|+|+++|+.+++++|+|+++|||+|||++|++|++.. ...+
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----------------~g~~ 87 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----------------DGFT 87 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS----------------SSEE
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc----------------CCcE
Confidence 457788999999998 69999999999999999999999999999999999999999741 1349
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH------hcCCCEEEeChHHHH------HHHHccccc
Q 007280 227 LILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL------ERGVDILVATPGRLV------DLLERARVS 294 (609)
Q Consensus 227 Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l------~~~~~IlV~Tpg~L~------~~l~~~~~~ 294 (609)
|||+|+++|+.|+.+.++++ ++++..+.++....+....+ ...++|+|+||++|. +++.. ...
T Consensus 88 lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~ 162 (591)
T 2v1x_A 88 LVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYE 162 (591)
T ss_dssp EEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHH
T ss_pred EEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhh
Confidence 99999999999999999987 78888888888766543322 346899999999874 23332 345
Q ss_pred ccceEEEEeccchhhhhcC--CHHHHHH--HHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCccc
Q 007280 295 LQMIRYLALDEADRMLDMG--FEPQIRK--IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTD 370 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~g--f~~~i~~--i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 370 (609)
+..+++|||||||++++++ |.+.+.. ++... .+..++|+||||++..+...+..++.......+. .....+
T Consensus 163 ~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~----~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~-~~~~r~ 237 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ----FPNASLIGLTATATNHVLTDAQKILCIEKCFTFT-ASFNRP 237 (591)
T ss_dssp TTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH----CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEE-CCCCCT
T ss_pred ccCCcEEEEECcccccccccccHHHHHHHHHHHHh----CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEe-cCCCCc
Confidence 7789999999999999988 8887765 33333 3457899999999999888877777543222221 122233
Q ss_pred ceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhh
Q 007280 371 LIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSF 450 (609)
Q Consensus 371 ~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F 450 (609)
++. +.+..........++.|...+... ....++||||++++.++.+++.|...++.+..+|++|++.+|.++++.|
T Consensus 238 nl~--~~v~~~~~~~~~~~~~l~~~l~~~--~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F 313 (591)
T 2v1x_A 238 NLY--YEVRQKPSNTEDFIEDIVKLINGR--YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKW 313 (591)
T ss_dssp TEE--EEEEECCSSHHHHHHHHHHHHTTT--TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred ccE--EEEEeCCCcHHHHHHHHHHHHHHh--ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHH
Confidence 343 333333222223333333333221 1367899999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHH
Q 007280 451 KSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLT 520 (609)
Q Consensus 451 ~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~ 520 (609)
++|+.+|||||+++++|||+|+|++||+|++|.+++.|+||+|||||.|++|.|++||+..|...+..++
T Consensus 314 ~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 314 SANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp HTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred HcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987766555443
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-52 Score=457.39 Aligned_cols=369 Identities=28% Similarity=0.437 Sum_probs=261.1
Q ss_pred CcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCC--CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCC
Q 007280 141 PPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218 (609)
Q Consensus 141 p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~--~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~ 218 (609)
|.....|...++++.+.+.+...+|..|+++|+++|+.++++ +++|++++||||||++|++|++..+.....
T Consensus 115 p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~------ 188 (508)
T 3fho_A 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP------ 188 (508)
T ss_dssp ------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCC------
T ss_pred ccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCC------
Confidence 444555667789999999999999999999999999999987 999999999999999999999987754321
Q ss_pred CccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccce
Q 007280 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMI 298 (609)
Q Consensus 219 ~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i 298 (609)
.+++|||+|+++|+.|++++++++.....+.+...+++..... ....++|+|+||++|.+++......+..+
T Consensus 189 ----~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~ 260 (508)
T 3fho_A 189 ----KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDI 260 (508)
T ss_dssp ----SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred ----CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCC
Confidence 2349999999999999999999998777777766666543222 23368999999999999998888889999
Q ss_pred EEEEeccchhhhh-cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEE
Q 007280 299 RYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVE 377 (609)
Q Consensus 299 ~~lVlDEah~~l~-~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~ 377 (609)
++|||||||++.+ .+|...+..+...+ +...|+|+||||+++.+..+...++.++..+.+.........+.+.+.
T Consensus 261 ~lIIiDEaH~~~~~~~~~~~~~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 336 (508)
T 3fho_A 261 KVFVLDEADNMLDQQGLGDQSMRIKHLL----PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYM 336 (508)
T ss_dssp CEEEECCHHHHTTC--CHHHHHHHHHHS----CTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEE
T ss_pred CEEEEechhhhcccCCcHHHHHHHHHhC----CcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEE
Confidence 9999999999987 67999999999888 567899999999999999999999988887766655555555555555
Q ss_pred EEec-cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCc
Q 007280 378 FVHE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTP 456 (609)
Q Consensus 378 ~~~~-~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ 456 (609)
.+.. ..+...+.+++... ...++||||++++.++.+++.|...++.+..+||++++.+|+.+++.|++|+.+
T Consensus 337 ~~~~~~~k~~~l~~ll~~~-------~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~ 409 (508)
T 3fho_A 337 DCQSEEHKYNVLVELYGLL-------TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSK 409 (508)
T ss_dssp EC--CHHHHHHHHHHHC----------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCC
T ss_pred ECCchHHHHHHHHHHHHhc-------CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe
Confidence 5433 33444444444332 256899999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccCCCCCCccEEEEcCCC------CCHHHHHHHhhhcccCCCCceEEEEEc-CCChhhHHHHHHHHHHhccc
Q 007280 457 ILVATDVAARGLDIPHVAHVVNFDLP------NDIDDYVHRIGRTGRAGKSGLATAFFN-ENNMSLARPLTELMQEANQE 529 (609)
Q Consensus 457 ILVaT~v~~~GlDip~v~~VI~~d~p------~s~~~y~QriGRagR~g~~G~~~~f~~-~~~~~~~~~l~~~l~~~~q~ 529 (609)
|||||+++++|+|+|++++||+||+| .++..|+||+||+||.|++|.|++|++ .++...++.+.+++....++
T Consensus 410 VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~ 489 (508)
T 3fho_A 410 VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITR 489 (508)
T ss_dssp CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-
T ss_pred EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCccc
Confidence 99999999999999999999999999 789999999999999999999999998 46677888888888877777
Q ss_pred chHHH
Q 007280 530 VPAWL 534 (609)
Q Consensus 530 vp~~l 534 (609)
+|.+.
T Consensus 490 l~~~~ 494 (508)
T 3fho_A 490 VPTDD 494 (508)
T ss_dssp -----
T ss_pred CCCcc
Confidence 77543
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.1e-49 Score=438.14 Aligned_cols=343 Identities=21% Similarity=0.292 Sum_probs=278.3
Q ss_pred CccccCCCCHHHHHHHHH-CCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 145 NTFAEIDLGEALNLNIRR-CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 145 ~~f~~~~l~~~l~~~i~~-~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
..|++++|++.+.+.+++ ++|..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. .
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~------------- 65 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---N------------- 65 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---S-------------
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---C-------------
Confidence 468999999999999998 89999999999999999999999999999999999999998732 1
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHH---HH-hcCCCEEEeChHHHHHHHHcccccccceE
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLR---EL-ERGVDILVATPGRLVDLLERARVSLQMIR 299 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l-~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~ 299 (609)
..+|||+|+++|+.|+.+.++++ ++.+..+.++....+... .+ ...++|+|+||++|........+...+++
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 24899999999999999999885 678888888877554432 22 23589999999999643222233457899
Q ss_pred EEEeccchhhhhcC--CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhh--cCcEEEEecccCCcccceeEE
Q 007280 300 YLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL--ANYIFLAVGRVGSSTDLIVQR 375 (609)
Q Consensus 300 ~lVlDEah~~l~~g--f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l--~~~~~~~~~~~~~~~~~i~q~ 375 (609)
+|||||||++.+++ |.+.+..+...+.. .+..++++||||++..+...+...+ .++..+. . ....+++ .
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~~--~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~--~~~r~~l--~ 214 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQR--FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-S--SFDRPNI--R 214 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHHH--CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-C--CCCCTTE--E
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHHh--CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-C--CCCCCce--E
Confidence 99999999999987 77777655322211 1347899999999987765444433 3333332 2 1122333 3
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCC
Q 007280 376 VEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKT 455 (609)
Q Consensus 376 ~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~ 455 (609)
+.+.....+...+++++... ...++||||++++.++.+++.|...++.+..+|++|++.+|+++++.|++++.
T Consensus 215 ~~v~~~~~~~~~l~~~l~~~-------~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 287 (523)
T 1oyw_A 215 YMLMEKFKPLDQLMRYVQEQ-------RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDL 287 (523)
T ss_dssp EEEEECSSHHHHHHHHHHHT-------TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred EEEEeCCCHHHHHHHHHHhc-------CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 44555566677777777543 25679999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHH
Q 007280 456 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTE 521 (609)
Q Consensus 456 ~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~ 521 (609)
+|||||+++++|||+|+|++||+|++|.+++.|+||+||+||.|++|.|++|++..|...++.+.+
T Consensus 288 ~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 288 QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp SEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred eEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999888776665543
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.8e-50 Score=431.78 Aligned_cols=329 Identities=23% Similarity=0.282 Sum_probs=267.1
Q ss_pred HHHHHHH-CCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHH
Q 007280 156 LNLNIRR-CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE 234 (609)
Q Consensus 156 l~~~i~~-~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 234 (609)
+.+.+++ ++| +|+|+|+++|+.+++++|+++++|||||||++|++|++..+.. ++++|||+||++
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~-------------~~~~lil~Pt~~ 75 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------GKKSALVFPTVT 75 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT-------------TCCEEEEESSHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC-------------CCEEEEEECCHH
Confidence 3444444 355 8999999999999999999999999999999999988765511 134999999999
Q ss_pred HHHHHHHHHHHhhccCCeEEEEEECCcCh---HHHHHHHhcC-CCEEEeChHHHHHHHHcccccccceEEEEeccchhh-
Q 007280 235 LSSQIHVEAKKFSYQTGVKVVVAYGGAPI---NQQLRELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADRM- 309 (609)
Q Consensus 235 La~Qi~~~~~~~~~~~~i~~~~~~gg~~~---~~~~~~l~~~-~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~- 309 (609)
|+.|+++++++++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++
T Consensus 76 L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 76 LVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp HHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhh
Confidence 99999999999988 78999999999988 5566677666 99999999999988875 55778999999999755
Q ss_pred ---------hh-cCCHHH-HHHHHHHcC-------CCCCCCceEEEEEee-ccHHHH-HHHHHhhcCcEEEEecccCCcc
Q 007280 310 ---------LD-MGFEPQ-IRKIVQQMD-------MPPPGMRQTMLFSAT-FPKEIQ-RLASDFLANYIFLAVGRVGSST 369 (609)
Q Consensus 310 ---------l~-~gf~~~-i~~i~~~l~-------~~~~~~~q~il~SAT-~~~~~~-~l~~~~l~~~~~~~~~~~~~~~ 369 (609)
++ ++|.++ +..++..+. .......|+++|||| +|..+. .+...++. +.+.......
T Consensus 153 ~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~ 228 (414)
T 3oiy_A 153 KASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVA 228 (414)
T ss_dssp HCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCC
T ss_pred hccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcccccc
Confidence 44 888888 788888762 111267899999999 665544 33333332 2223333444
Q ss_pred cceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcE-EecCccCHHHHHHHHH
Q 007280 370 DLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPAT-TIHGDRTQQERELALR 448 (609)
Q Consensus 370 ~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~-~ihg~~~~~~R~~~~~ 448 (609)
..+.+.+..+ .+...|.+++... ..++||||++++.++.+++.|...++.+. .+||+ +|+ ++
T Consensus 229 ~~i~~~~~~~---~~~~~l~~~l~~~--------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~ 291 (414)
T 3oiy_A 229 RNITHVRISS---RSKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FE 291 (414)
T ss_dssp CSEEEEEESS---CCHHHHHHHHHHH--------CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HH
T ss_pred ccchheeecc---CHHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HH
Confidence 5555555433 5666777777662 46799999999999999999999999998 99995 444 99
Q ss_pred hhhcCCCcEEEE----ccccccCCCCCC-ccEEEEcCCC--CCHHHHHHHhhhcccCC----CCceEEEEEcCCChhhHH
Q 007280 449 SFKSGKTPILVA----TDVAARGLDIPH-VAHVVNFDLP--NDIDDYVHRIGRTGRAG----KSGLATAFFNENNMSLAR 517 (609)
Q Consensus 449 ~F~~g~~~ILVa----T~v~~~GlDip~-v~~VI~~d~p--~s~~~y~QriGRagR~g----~~G~~~~f~~~~~~~~~~ 517 (609)
.|++|+++|||| |+++++|||+|+ |++||+||+| .++.+|+||+|||||.| ++|.|++|+ .+...+.
T Consensus 292 ~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~ 369 (414)
T 3oiy_A 292 DFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFE 369 (414)
T ss_dssp HHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHH
T ss_pred HHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHH
Confidence 999999999999 999999999999 9999999999 99999999999999988 589999999 6777888
Q ss_pred HHHHHHH
Q 007280 518 PLTELMQ 524 (609)
Q Consensus 518 ~l~~~l~ 524 (609)
.|.+.+.
T Consensus 370 ~l~~~~~ 376 (414)
T 3oiy_A 370 SLKTRLL 376 (414)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8888887
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4.3e-48 Score=430.43 Aligned_cols=327 Identities=18% Similarity=0.223 Sum_probs=255.9
Q ss_pred HCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 162 ~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
.+|| +|||+|..++|.+++|+ |++++||+|||++|++|++.+.+.. +.++||+||++||.|+++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g-------------~~vlVltptreLA~qd~e 142 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTG-------------KGVHVVTVNEYLASRDAE 142 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTS-------------SCEEEEESSHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcC-------------CCEEEEeCCHHHHHHHHH
Confidence 5799 99999999999999998 9999999999999999998654432 239999999999999999
Q ss_pred HHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHcc------cccccceEEEEeccchhhh-hcC
Q 007280 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DMG 313 (609)
Q Consensus 242 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~------~~~l~~i~~lVlDEah~~l-~~g 313 (609)
++..|....++++.+++||.+...+ ....+|+|+|+||++| .|+|... .+.++.+.++||||||+|| |++
T Consensus 143 ~~~~l~~~lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea 220 (844)
T 1tf5_A 143 QMGKIFEFLGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA 220 (844)
T ss_dssp HHHHHHHHTTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc
Confidence 9999999999999999999876443 3445799999999999 7776543 3567889999999999998 775
Q ss_pred ---------------CHHHHHHHHHHcCC-----CCCCCceEE-----------------EEEeeccH---HHHHH--HH
Q 007280 314 ---------------FEPQIRKIVQQMDM-----PPPGMRQTM-----------------LFSATFPK---EIQRL--AS 351 (609)
Q Consensus 314 ---------------f~~~i~~i~~~l~~-----~~~~~~q~i-----------------l~SAT~~~---~~~~l--~~ 351 (609)
|..++..|+..+.. ..++.+|++ |||||++. .+... +.
T Consensus 221 ~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~ 300 (844)
T 1tf5_A 221 RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAH 300 (844)
T ss_dssp TCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHH
T ss_pred ccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHH
Confidence 56788888888731 012467888 99999874 33333 22
Q ss_pred Hhhc---CcEE-----EEeccc------------------------CC--------------------------------
Q 007280 352 DFLA---NYIF-----LAVGRV------------------------GS-------------------------------- 367 (609)
Q Consensus 352 ~~l~---~~~~-----~~~~~~------------------------~~-------------------------------- 367 (609)
.++. +|+. +.++.. ..
T Consensus 301 ~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te 380 (844)
T 1tf5_A 301 VAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTE 380 (844)
T ss_dssp HTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchh
Confidence 2222 2221 011000 00
Q ss_pred -----------------ccccee---EEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC
Q 007280 368 -----------------STDLIV---QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (609)
Q Consensus 368 -----------------~~~~i~---q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~ 427 (609)
..+.+. +.+.++....|...|++.+...... ..++||||+|++.++.|+..|...
T Consensus 381 ~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~-----~~pvLVft~s~~~se~Ls~~L~~~ 455 (844)
T 1tf5_A 381 EEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMT-----GQPVLVGTVAVETSELISKLLKNK 455 (844)
T ss_dssp HHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHH-----TCCEEEEESCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhc-----CCcEEEEECCHHHHHHHHHHHHHC
Confidence 000000 1133444566777777777654222 567999999999999999999999
Q ss_pred CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCC--------CccEEEEcCCCCCHHHHHHHhhhcccCC
Q 007280 428 GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIP--------HVAHVVNFDLPNDIDDYVHRIGRTGRAG 499 (609)
Q Consensus 428 ~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip--------~v~~VI~~d~p~s~~~y~QriGRagR~g 499 (609)
++++..||+++.+.+|+.+.+.|+.| .||||||+|+||+||+ ++.||||||+|.+...|+||+|||||.|
T Consensus 456 gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG 533 (844)
T 1tf5_A 456 GIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQG 533 (844)
T ss_dssp TCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGG
T ss_pred CCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCC
Confidence 99999999999888887777667665 6999999999999999 7889999999999999999999999999
Q ss_pred CCceEEEEEcCCCh
Q 007280 500 KSGLATAFFNENNM 513 (609)
Q Consensus 500 ~~G~~~~f~~~~~~ 513 (609)
++|.+++|++.+|.
T Consensus 534 ~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 534 DPGITQFYLSMEDE 547 (844)
T ss_dssp CCEEEEEEEETTSS
T ss_pred CCCeEEEEecHHHH
Confidence 99999999997764
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7.1e-48 Score=428.30 Aligned_cols=338 Identities=22% Similarity=0.218 Sum_probs=205.6
Q ss_pred CCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHH
Q 007280 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (609)
Q Consensus 164 ~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~ 243 (609)
...+|+|+|.++|+.+++++++|+++|||+|||++|++|++..+..... ...+.+|||+||++|+.|+++++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------~~~~~~lil~P~~~L~~q~~~~~ 75 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQKNVF 75 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc--------cCCCeEEEEeCCHHHHHHHHHHH
Confidence 4468999999999999999999999999999999999999988765431 11245999999999999999999
Q ss_pred HHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccc-cccceEEEEeccchhhhhcCCHHHH-HHH
Q 007280 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMGFEPQI-RKI 321 (609)
Q Consensus 244 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~-~l~~i~~lVlDEah~~l~~gf~~~i-~~i 321 (609)
++++...++++..++|+.....+...+..+++|+|+||++|.+++....+ .+..+++|||||||++.++++...+ ..+
T Consensus 76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~ 155 (556)
T 4a2p_A 76 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRY 155 (556)
T ss_dssp HHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHH
T ss_pred HHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHH
Confidence 99988888999999999987777777777899999999999999988776 7899999999999999987743333 233
Q ss_pred HHHcCCCCCCCceEEEEEeeccH-----------HHHHHHHHhhcCcEEEEecccC---CcccceeEEEEEEe-------
Q 007280 322 VQQMDMPPPGMRQTMLFSATFPK-----------EIQRLASDFLANYIFLAVGRVG---SSTDLIVQRVEFVH------- 380 (609)
Q Consensus 322 ~~~l~~~~~~~~q~il~SAT~~~-----------~~~~l~~~~l~~~~~~~~~~~~---~~~~~i~q~~~~~~------- 380 (609)
+........+..|+|+||||++. .+..+...+....+........ .........+..+.
T Consensus 156 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (556)
T 4a2p_A 156 LEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 235 (556)
T ss_dssp HHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHH
T ss_pred HHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChH
Confidence 32211112345789999999842 2223332221111111000000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007280 381 -------------------------------------------------------------------------------- 380 (609)
Q Consensus 381 -------------------------------------------------------------------------------- 380 (609)
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (556)
T 4a2p_A 236 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 315 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------ccchHHHHHHHHHHHHhcCcCCCCce
Q 007280 381 ------------------------------------------------------ESDKRSHLMDLLHAQVANGVHGKQAL 406 (609)
Q Consensus 381 ------------------------------------------------------~~~k~~~l~~~l~~~~~~~~~~~~~k 406 (609)
...|...|.++|...... ....+
T Consensus 316 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~---~~~~k 392 (556)
T 4a2p_A 316 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY---NPQTR 392 (556)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHH---CTTCC
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcC---CCCce
Confidence 122444455555444322 23678
Q ss_pred EEEEecchhhHHHHHHHHHhC------------CCCcEEecCccCHHHHHHHHHhhhc-CCCcEEEEccccccCCCCCCc
Q 007280 407 TLVFVETKKGADALEHWLYMN------------GFPATTIHGDRTQQERELALRSFKS-GKTPILVATDVAARGLDIPHV 473 (609)
Q Consensus 407 ~lVF~~t~~~~~~l~~~L~~~------------~~~~~~ihg~~~~~~R~~~~~~F~~-g~~~ILVaT~v~~~GlDip~v 473 (609)
+||||++++.++.|++.|... +.....+|++|++.+|.+++++|++ |+++|||||+++++|||+|+|
T Consensus 393 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v 472 (556)
T 4a2p_A 393 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 472 (556)
T ss_dssp EEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------
T ss_pred EEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhC
Confidence 999999999999999999775 4555567888999999999999999 999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChh
Q 007280 474 AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMS 514 (609)
Q Consensus 474 ~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~ 514 (609)
++||+||+|+|+..|+||+|| ||. ++|.|++|+++.+..
T Consensus 473 ~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 473 NLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999999999 999 899999999986553
No 21
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.2e-47 Score=423.93 Aligned_cols=341 Identities=20% Similarity=0.247 Sum_probs=236.5
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
.+|+|+|.++|+.+++++++|++++||+|||++|++|++..+..... ...+.+|||+||++|+.|+++++++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--------GQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999988875431 1124599999999999999999999
Q ss_pred hhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccc-cccceEEEEeccchhhhhcC-CHHHHHHHHH
Q 007280 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMG-FEPQIRKIVQ 323 (609)
Q Consensus 246 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~-~l~~i~~lVlDEah~~l~~g-f~~~i~~i~~ 323 (609)
++...++++..++|+.....+...+..+++|+|+||++|.+++....+ .+..+++|||||||++.+.+ +...+..++.
T Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 154 (555)
T 3tbk_A 75 YFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLD 154 (555)
T ss_dssp HHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHH
T ss_pred HhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHH
Confidence 998889999999999987777777777899999999999999988776 78999999999999998775 3333333333
Q ss_pred H-cCCCCCCCceEEEEEeeccH-----------HHHHHHHHhhcCcEEEEeccc---CCcccceeEEEEEEe--------
Q 007280 324 Q-MDMPPPGMRQTMLFSATFPK-----------EIQRLASDFLANYIFLAVGRV---GSSTDLIVQRVEFVH-------- 380 (609)
Q Consensus 324 ~-l~~~~~~~~q~il~SAT~~~-----------~~~~l~~~~l~~~~~~~~~~~---~~~~~~i~q~~~~~~-------- 380 (609)
. +........|+++||||++. .+..+...+-...+....... ..........+..+.
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred hhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 3 22222356799999999843 222222221111111100000 000000000011100
Q ss_pred --------------------------------------------------------------------------------
Q 007280 381 -------------------------------------------------------------------------------- 380 (609)
Q Consensus 381 -------------------------------------------------------------------------------- 380 (609)
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (555)
T 3tbk_A 235 CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDAL 314 (555)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------ccchHHHHHHHHHHHHhcCcCCCCce
Q 007280 381 ------------------------------------------------------ESDKRSHLMDLLHAQVANGVHGKQAL 406 (609)
Q Consensus 381 ------------------------------------------------------~~~k~~~l~~~l~~~~~~~~~~~~~k 406 (609)
...|...|.++|...... ....+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~---~~~~k 391 (555)
T 3tbk_A 315 IISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHL---KPETK 391 (555)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHH---CTTCC
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhcc---CCCce
Confidence 123444555555544332 23578
Q ss_pred EEEEecchhhHHHHHHHHHhCC------------CCcEEecCccCHHHHHHHHHhhhc-CCCcEEEEccccccCCCCCCc
Q 007280 407 TLVFVETKKGADALEHWLYMNG------------FPATTIHGDRTQQERELALRSFKS-GKTPILVATDVAARGLDIPHV 473 (609)
Q Consensus 407 ~lVF~~t~~~~~~l~~~L~~~~------------~~~~~ihg~~~~~~R~~~~~~F~~-g~~~ILVaT~v~~~GlDip~v 473 (609)
+||||++++.++.|++.|...+ .....+||+|++.+|.+++++|++ |+++|||||+++++|||+|+|
T Consensus 392 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v 471 (555)
T 3tbk_A 392 TILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAEC 471 (555)
T ss_dssp EEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSC
T ss_pred EEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccC
Confidence 9999999999999999998763 344456679999999999999999 999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHH
Q 007280 474 AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPL 519 (609)
Q Consensus 474 ~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l 519 (609)
++||+||+|+|+..|+||+|| ||. +.|.|++|+++.+......+
T Consensus 472 ~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 472 NLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999 999 89999999998776555444
No 22
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.3e-48 Score=440.61 Aligned_cols=362 Identities=19% Similarity=0.248 Sum_probs=232.3
Q ss_pred HHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHH
Q 007280 157 NLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (609)
Q Consensus 157 ~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 236 (609)
..++..++|.+|+|+|.++|+.+++++|+|+++|||+|||++|++|++..+...... ..+.+|||+||++|+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~--------~~~~~lvl~Pt~~L~ 74 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--------QKGKVVFFANQIPVY 74 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTT--------CCCCEEEECSSHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccC--------CCCeEEEEECCHHHH
Confidence 345677899999999999999999999999999999999999999999887654311 113499999999999
Q ss_pred HHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccc-cccceEEEEeccchhhhhcC-C
Q 007280 237 SQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMG-F 314 (609)
Q Consensus 237 ~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~-~l~~i~~lVlDEah~~l~~g-f 314 (609)
.|+.+++++++...++++..++|+.....+...+...++|+|+||++|.+++....+ .+..+++|||||||++.+.. +
T Consensus 75 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~ 154 (696)
T 2ykg_A 75 EQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 154 (696)
T ss_dssp HHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHH
T ss_pred HHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccH
Confidence 999999999988788999999999876666666667899999999999999988766 78999999999999987654 2
Q ss_pred HHHHHHHHHH-cCCCCCCCceEEEEEeecc--------HHHHHHHHHh---------------------hcCcEEEEecc
Q 007280 315 EPQIRKIVQQ-MDMPPPGMRQTMLFSATFP--------KEIQRLASDF---------------------LANYIFLAVGR 364 (609)
Q Consensus 315 ~~~i~~i~~~-l~~~~~~~~q~il~SAT~~--------~~~~~l~~~~---------------------l~~~~~~~~~~ 364 (609)
...+...+.. +........++|+||||+. ..+..+...+ ...+.......
T Consensus 155 ~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~ 234 (696)
T 2ykg_A 155 NMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKV 234 (696)
T ss_dssp HHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEEC
T ss_pred HHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEec
Confidence 2222222222 2222345679999999986 1122221111 01111000000
Q ss_pred cCCc----------------------------------------------------------------------------
Q 007280 365 VGSS---------------------------------------------------------------------------- 368 (609)
Q Consensus 365 ~~~~---------------------------------------------------------------------------- 368 (609)
....
T Consensus 235 ~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (696)
T 2ykg_A 235 ESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTS 314 (696)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHH
T ss_pred CcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Confidence 0000
Q ss_pred -----------------------------------ccceeEEEEE-------------E---eccchHHHHHHHHHHHHh
Q 007280 369 -----------------------------------TDLIVQRVEF-------------V---HESDKRSHLMDLLHAQVA 397 (609)
Q Consensus 369 -----------------------------------~~~i~q~~~~-------------~---~~~~k~~~l~~~l~~~~~ 397 (609)
...+.+.+.. . ....|...|.++|.....
T Consensus 315 ~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~ 394 (696)
T 2ykg_A 315 HLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYH 394 (696)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence 0000000000 0 023345555566655432
Q ss_pred cCcCCCCceEEEEecchhhHHHHHHHHHhCC----CCcEEe--------cCccCHHHHHHHHHhhhc-CCCcEEEEcccc
Q 007280 398 NGVHGKQALTLVFVETKKGADALEHWLYMNG----FPATTI--------HGDRTQQERELALRSFKS-GKTPILVATDVA 464 (609)
Q Consensus 398 ~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~----~~~~~i--------hg~~~~~~R~~~~~~F~~-g~~~ILVaT~v~ 464 (609)
. ....++||||+++..++.|+++|...+ +.+..+ |++|++.+|.+++++|++ |+.+|||||+++
T Consensus 395 ~---~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~ 471 (696)
T 2ykg_A 395 L---NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 471 (696)
T ss_dssp T---CTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESS
T ss_pred c---CCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechh
Confidence 1 235689999999999999999999987 888888 569999999999999998 999999999999
Q ss_pred ccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHH----HHHHHHhcccch
Q 007280 465 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPL----TELMQEANQEVP 531 (609)
Q Consensus 465 ~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l----~~~l~~~~q~vp 531 (609)
++|||||+|++||+||+|++++.|+||+|| ||. +.|.|++|++..+......+ .+++.....+++
T Consensus 472 ~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 540 (696)
T 2ykg_A 472 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 540 (696)
T ss_dssp CCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999 998 88999999998776555544 445555444443
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-46 Score=443.59 Aligned_cols=334 Identities=19% Similarity=0.235 Sum_probs=262.5
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 144 ~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
...|..+.+++.+...+....+..|+|+|+++|+.+++++++|++|+||||||++|++|++..+...
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g------------- 227 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK------------- 227 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT-------------
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC-------------
Confidence 3467777777777777766777789999999999999999999999999999999999999877432
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEe
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
.++||++||++|+.|+++.++++.. .+.+++|+... ...++|+|+||++|.+++.+....+.++++|||
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVI 296 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIF 296 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEE
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEE
Confidence 3499999999999999999998754 46667787763 345899999999999999988777899999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHH--HHHHHHHhhcCcEEEEecccCCcccceeEEE-----
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE--IQRLASDFLANYIFLAVGRVGSSTDLIVQRV----- 376 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~--~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~----- 376 (609)
||||+|++++|...+..++..+ +...|+|+||||+++. +..++..+...+..+......... +...+
T Consensus 297 DEaH~l~d~~rg~~~e~ii~~l----~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p--l~~~~~~~~~ 370 (1108)
T 3l9o_A 297 DEVHYMRDKERGVVWEETIILL----PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP--LQHYLFPAHG 370 (1108)
T ss_dssp ETGGGTTSHHHHHHHHHHHHHS----CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC--EEEEEEETTS
T ss_pred hhhhhccccchHHHHHHHHHhc----CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc--ceEEEeecCC
Confidence 9999999999999999999988 6778999999999764 445666555555554433221111 11111
Q ss_pred ----EEEeccch-------------------------------------------HHHHHHHHHHHHhcCcCCCCceEEE
Q 007280 377 ----EFVHESDK-------------------------------------------RSHLMDLLHAQVANGVHGKQALTLV 409 (609)
Q Consensus 377 ----~~~~~~~k-------------------------------------------~~~l~~~l~~~~~~~~~~~~~k~lV 409 (609)
..+....+ ...+..++...... ...++||
T Consensus 371 ~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~----~~~~vIV 446 (1108)
T 3l9o_A 371 DGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK----KYNPVIV 446 (1108)
T ss_dssp SCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT----TCCCEEE
T ss_pred cceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc----CCCCEEE
Confidence 11111000 22333444333322 2568999
Q ss_pred EecchhhHHHHHHHHHhCCCC---------------------------------------cEEecCccCHHHHHHHHHhh
Q 007280 410 FVETKKGADALEHWLYMNGFP---------------------------------------ATTIHGDRTQQERELALRSF 450 (609)
Q Consensus 410 F~~t~~~~~~l~~~L~~~~~~---------------------------------------~~~ihg~~~~~~R~~~~~~F 450 (609)
||++++.|+.++..|...++. +..+||+|++.+|+.+++.|
T Consensus 447 F~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F 526 (1108)
T 3l9o_A 447 FSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF 526 (1108)
T ss_dssp EESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHH
T ss_pred EeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHH
Confidence 999999999999988543222 68899999999999999999
Q ss_pred hcCCCcEEEEccccccCCCCCCccEEEEcCCC--------CCHHHHHHHhhhcccCC--CCceEEEEEcCC
Q 007280 451 KSGKTPILVATDVAARGLDIPHVAHVVNFDLP--------NDIDDYVHRIGRTGRAG--KSGLATAFFNEN 511 (609)
Q Consensus 451 ~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p--------~s~~~y~QriGRagR~g--~~G~~~~f~~~~ 511 (609)
++|.++|||||+++++|||||++++||+++.| .++.+|+||+|||||.| ..|.|++++++.
T Consensus 527 ~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 527 QEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp HHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred hCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999999999999999999999987764 36778999999999999 689999998764
No 24
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=5e-46 Score=429.88 Aligned_cols=339 Identities=22% Similarity=0.221 Sum_probs=212.7
Q ss_pred HCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 162 ~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
.+++.+|+|+|.++|+.++.++++|++++||+|||++|++|++..+..... ...+.+|||+||++|+.|+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~~Lvl~Pt~~L~~Q~~~ 314 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQKN 314 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------cCCCeEEEEeCCHHHHHHHHH
Confidence 357889999999999999999999999999999999999999988875421 112349999999999999999
Q ss_pred HHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccc-cccceEEEEeccchhhhhcCC-HHHHH
Q 007280 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMGF-EPQIR 319 (609)
Q Consensus 242 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~-~l~~i~~lVlDEah~~l~~gf-~~~i~ 319 (609)
++++++...++++..++|+.....+...+..+++|+|+||++|.+++....+ .+..+++|||||||++.+.+. ...+.
T Consensus 315 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~ 394 (797)
T 4a2q_A 315 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (797)
T ss_dssp HHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHH
T ss_pred HHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHH
Confidence 9999988888999999999987777777778899999999999999988776 789999999999999987653 22232
Q ss_pred HHHHHcCCCCCCCceEEEEEeecc-----------HHHHHHHHHhhcCcEEEEecccC---CcccceeEEEEEEe-----
Q 007280 320 KIVQQMDMPPPGMRQTMLFSATFP-----------KEIQRLASDFLANYIFLAVGRVG---SSTDLIVQRVEFVH----- 380 (609)
Q Consensus 320 ~i~~~l~~~~~~~~q~il~SAT~~-----------~~~~~l~~~~l~~~~~~~~~~~~---~~~~~i~q~~~~~~----- 380 (609)
.++........+..|+|+||||+. ..+..+...+-...+........ .........+..+.
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 474 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHN 474 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCC
T ss_pred HHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCc
Confidence 333322122245578999999984 23333332221111111000000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007280 381 -------------------------------------------------------------------------------- 380 (609)
Q Consensus 381 -------------------------------------------------------------------------------- 380 (609)
T Consensus 475 ~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 554 (797)
T 4a2q_A 475 PFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYND 554 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------ccchHHHHHHHHHHHHhcCcCCCC
Q 007280 381 --------------------------------------------------------ESDKRSHLMDLLHAQVANGVHGKQ 404 (609)
Q Consensus 381 --------------------------------------------------------~~~k~~~l~~~l~~~~~~~~~~~~ 404 (609)
...|...|.++|...... ...
T Consensus 555 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~---~~~ 631 (797)
T 4a2q_A 555 ALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY---NPQ 631 (797)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH---CSS
T ss_pred HHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhcc---CCC
Confidence 122334444455443322 236
Q ss_pred ceEEEEecchhhHHHHHHHHHhC------------CCCcEEecCccCHHHHHHHHHhhhc-CCCcEEEEccccccCCCCC
Q 007280 405 ALTLVFVETKKGADALEHWLYMN------------GFPATTIHGDRTQQERELALRSFKS-GKTPILVATDVAARGLDIP 471 (609)
Q Consensus 405 ~k~lVF~~t~~~~~~l~~~L~~~------------~~~~~~ihg~~~~~~R~~~~~~F~~-g~~~ILVaT~v~~~GlDip 471 (609)
.++||||++++.++.|+++|... +..+..+|++|++.+|.+++++|++ |+++|||||+++++|||+|
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp 711 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------C
T ss_pred CeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCch
Confidence 78999999999999999999873 4556677999999999999999999 9999999999999999999
Q ss_pred CccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 472 HVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 472 ~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
+|++||+||+|+|+..|+||+|| ||. ++|.|++|++..+.
T Consensus 712 ~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 712 QCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp CCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 99999999999999999999999 999 89999999987654
No 25
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1e-45 Score=435.25 Aligned_cols=323 Identities=23% Similarity=0.289 Sum_probs=263.9
Q ss_pred HCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 162 ~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
.++| +|||+|+++|+.+++++|++++|+||||||++|+++++..+.. ++++|||+||++||.|+++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-------------~~~~Lil~PtreLa~Q~~~ 139 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------GKKSALVFPTVTLVKQTLE 139 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-------------TCCEEEEESSHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------------CCeEEEEechHHHHHHHHH
Confidence 4677 6999999999999999999999999999999888887766521 1349999999999999999
Q ss_pred HHHHhhccCCeEEEEEECCcCh---HHHHHHHhcC-CCEEEeChHHHHHHHHcccccccceEEEEeccch----------
Q 007280 242 EAKKFSYQTGVKVVVAYGGAPI---NQQLRELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEAD---------- 307 (609)
Q Consensus 242 ~~~~~~~~~~i~~~~~~gg~~~---~~~~~~l~~~-~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah---------- 307 (609)
.+++|. ..++++..++|+.+. .++...+..+ ++|+|+||++|++++.. +.+.++++|||||||
T Consensus 140 ~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 140 RLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp HHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred HHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccch
Confidence 999987 678999999999987 6677777776 99999999999988875 567889999999995
Q ss_pred hhhh-cCCHHH-HHHHHHHcC-------CCCCCCceEEEEEee-ccHHHHH-HHHHhhcCcEEEEecccCCcccceeEEE
Q 007280 308 RMLD-MGFEPQ-IRKIVQQMD-------MPPPGMRQTMLFSAT-FPKEIQR-LASDFLANYIFLAVGRVGSSTDLIVQRV 376 (609)
Q Consensus 308 ~~l~-~gf~~~-i~~i~~~l~-------~~~~~~~q~il~SAT-~~~~~~~-l~~~~l~~~~~~~~~~~~~~~~~i~q~~ 376 (609)
+|++ ++|..+ +..++..+. .......|+++|||| .|..+.. +...++. +.+.........+.+.+
T Consensus 217 r~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~ 292 (1104)
T 4ddu_A 217 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVR 292 (1104)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEE
T ss_pred hhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEE
Confidence 5666 899998 888888762 111267899999999 5655442 3333332 33334444556666665
Q ss_pred EEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcE-EecCccCHHHHHHHHHhhhcCCC
Q 007280 377 EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPAT-TIHGDRTQQERELALRSFKSGKT 455 (609)
Q Consensus 377 ~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~-~ihg~~~~~~R~~~~~~F~~g~~ 455 (609)
..+ .+...|.++|... ..++||||++++.++.+++.|...++.+. .+||+ |.+ ++.|++|+.
T Consensus 293 ~~~---~k~~~L~~ll~~~--------~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~ 355 (1104)
T 4ddu_A 293 ISS---RSKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKI 355 (1104)
T ss_dssp ESC---CCHHHHHHHHHHH--------CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSC
T ss_pred Eec---CHHHHHHHHHHhc--------CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCC
Confidence 544 5667777777662 46799999999999999999999999998 99993 455 999999999
Q ss_pred cEEEE----ccccccCCCCCC-ccEEEEcCCCC-----------------------------------------------
Q 007280 456 PILVA----TDVAARGLDIPH-VAHVVNFDLPN----------------------------------------------- 483 (609)
Q Consensus 456 ~ILVa----T~v~~~GlDip~-v~~VI~~d~p~----------------------------------------------- 483 (609)
+|||| |+++++|||||+ |++|||||+|.
T Consensus 356 ~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~ 435 (1104)
T 4ddu_A 356 NILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQK 435 (1104)
T ss_dssp SEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHH
T ss_pred CEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 99999 999999999999 99999999998
Q ss_pred -------------------------CHHHHHHHhhhcccCCC----CceEEEEEcCCChhhHHHHHHHHH
Q 007280 484 -------------------------DIDDYVHRIGRTGRAGK----SGLATAFFNENNMSLARPLTELMQ 524 (609)
Q Consensus 484 -------------------------s~~~y~QriGRagR~g~----~G~~~~f~~~~~~~~~~~l~~~l~ 524 (609)
++.+|+||+|||||.+. +|.+++|+ +|...++.|.+.++
T Consensus 436 ~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 436 EFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred HHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 88899999999999654 44555555 77788888888776
No 26
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.4e-45 Score=418.81 Aligned_cols=340 Identities=22% Similarity=0.291 Sum_probs=264.5
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhh-HhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 145 ~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~-i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
.+|++++|++.+.+.+...+|.+|+|+|.++|+. +.++++++++||||||||++|.+|++..+...+
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~------------ 75 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG------------ 75 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC------------
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCC------------
Confidence 4699999999999999999999999999999998 778999999999999999999999998876432
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEe
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
.++||++|+++||.|++++++++.. .++++..++|+....+.. + ..++|+|+||++|..++.+....++++++||+
T Consensus 76 ~~il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIi 151 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVL 151 (715)
T ss_dssp SEEEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEE
Confidence 3499999999999999999966543 478888888887654321 2 36899999999999998887666899999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccce--------eEE
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLI--------VQR 375 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i--------~q~ 375 (609)
||||++.+..+...+..++..+. ..|+|+||||+++ ...+++ |+....+....+.......+ ...
T Consensus 152 DE~H~l~~~~~~~~l~~i~~~~~-----~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~ 224 (715)
T 2va8_A 152 DELHYLNDPERGPVVESVTIRAK-----RRNLLALSATISN-YKQIAK-WLGAEPVATNWRPVPLIEGVIYPERKKKEYN 224 (715)
T ss_dssp CSGGGGGCTTTHHHHHHHHHHHH-----TSEEEEEESCCTT-HHHHHH-HHTCEEEECCCCSSCEEEEEEEECSSTTEEE
T ss_pred echhhcCCcccchHHHHHHHhcc-----cCcEEEEcCCCCC-HHHHHH-HhCCCccCCCCCCCCceEEEEecCCccccee
Confidence 99999998889999999988873 5799999999975 344554 44432221111100000000 001
Q ss_pred EEEEecc----chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCC-----------------------
Q 007280 376 VEFVHES----DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG----------------------- 428 (609)
Q Consensus 376 ~~~~~~~----~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~----------------------- 428 (609)
+.+.... .....+.+.+..... ...++||||++++.++.+++.|....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~ 299 (715)
T 2va8_A 225 VIFKDNTTKKVHGDDAIIAYTLDSLS-----KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEG 299 (715)
T ss_dssp EEETTSCEEEEESSSHHHHHHHHHHT-----TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSS
T ss_pred eecCcchhhhcccchHHHHHHHHHHh-----cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhc
Confidence 1111100 001233444444332 26789999999999999999998642
Q ss_pred -------------CCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEE----cC-------CCCC
Q 007280 429 -------------FPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN----FD-------LPND 484 (609)
Q Consensus 429 -------------~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~----~d-------~p~s 484 (609)
..+..+|++|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+
T Consensus 300 ~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s 379 (715)
T 2va8_A 300 GSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIP 379 (715)
T ss_dssp CHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------C
T ss_pred cccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCC
Confidence 24789999999999999999999999999999999999999999999999 99 8999
Q ss_pred HHHHHHHhhhcccCCC--CceEEEEEcCCC
Q 007280 485 IDDYVHRIGRTGRAGK--SGLATAFFNENN 512 (609)
Q Consensus 485 ~~~y~QriGRagR~g~--~G~~~~f~~~~~ 512 (609)
..+|+||+|||||.|. .|.|++++++.+
T Consensus 380 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 380 IMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 9999999999999884 899999998765
No 27
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.9e-46 Score=425.77 Aligned_cols=336 Identities=20% Similarity=0.268 Sum_probs=267.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhh-HhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccc
Q 007280 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (609)
Q Consensus 146 ~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~-i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~ 224 (609)
+|++++|++.+.+.++..+|.+|+|+|.++|+. +.+++++++++|||||||++|.+|++..+...+ .
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~------------~ 69 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG------------G 69 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC------------S
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC------------C
Confidence 589999999999999999999999999999998 789999999999999999999999998887432 3
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEec
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlD 304 (609)
++||++|+++|+.|+++++++|.. .++++..++|+...... ....++|+|+||++|..++.+....++++++||+|
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEE
Confidence 499999999999999999976654 37899999997654332 12368999999999999988866668999999999
Q ss_pred cchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEE------EE
Q 007280 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRV------EF 378 (609)
Q Consensus 305 Eah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~------~~ 378 (609)
|||++.++.+...+..++..+. ...|+|+||||+++ ...+++ |+....+.... .. ..+...+ .+
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~----~~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~~---rp-~~l~~~~~~~~~~~~ 215 (720)
T 2zj8_A 146 EIHLIGSRDRGATLEVILAHML----GKAQIIGLSATIGN-PEELAE-WLNAELIVSDW---RP-VKLRRGVFYQGFVTW 215 (720)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHB----TTBEEEEEECCCSC-HHHHHH-HTTEEEEECCC---CS-SEEEEEEEETTEEEE
T ss_pred CCcccCCCcccHHHHHHHHHhh----cCCeEEEEcCCcCC-HHHHHH-HhCCcccCCCC---CC-CcceEEEEeCCeeec
Confidence 9999999899999999999884 36899999999975 344444 44322211100 00 0111111 11
Q ss_pred Eecc-chHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC------------------------------
Q 007280 379 VHES-DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN------------------------------ 427 (609)
Q Consensus 379 ~~~~-~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~------------------------------ 427 (609)
.... .....+.+++..... +..++||||++++.++.++..|...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 290 (720)
T 2zj8_A 216 EDGSIDRFSSWEELVYDAIR-----KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLA 290 (720)
T ss_dssp TTSCEEECSSTTHHHHHHHH-----TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHh-----CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHH
Confidence 1100 001122233333222 2577999999999999999998753
Q ss_pred ---CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEE----cC----CCCCHHHHHHHhhhcc
Q 007280 428 ---GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN----FD----LPNDIDDYVHRIGRTG 496 (609)
Q Consensus 428 ---~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~----~d----~p~s~~~y~QriGRag 496 (609)
...+..+|++|++.+|+.+++.|++|.++|||||+++++|||+|++++||+ || .|.++.+|+||+||||
T Consensus 291 ~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaG 370 (720)
T 2zj8_A 291 KAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAG 370 (720)
T ss_dssp HHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBC
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcC
Confidence 124889999999999999999999999999999999999999999999998 77 5899999999999999
Q ss_pred cCC--CCceEEEEEcCCC
Q 007280 497 RAG--KSGLATAFFNENN 512 (609)
Q Consensus 497 R~g--~~G~~~~f~~~~~ 512 (609)
|.| ..|.|++++++.+
T Consensus 371 R~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 371 RPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp CTTTCSEEEEEEECSSSC
T ss_pred CCCCCCCceEEEEecCcc
Confidence 988 4899999999876
No 28
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.2e-45 Score=409.65 Aligned_cols=326 Identities=18% Similarity=0.221 Sum_probs=230.4
Q ss_pred CCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 163 CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 163 ~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
++. .|+|+|..++|.+++|+ |+.++||+|||++|++|++...+.. +.++||+||++||.|++++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g-------------~~vlVltPTreLA~Q~~e~ 134 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTG-------------KGVHVVTVNDYLAQRDAEN 134 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTS-------------SCCEEEESSHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcC-------------CcEEEEcCCHHHHHHHHHH
Confidence 353 89999999999999998 9999999999999999998665422 2399999999999999999
Q ss_pred HHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHcc------cccccceEEEEeccchhhh-hcC-
Q 007280 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DMG- 313 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~------~~~l~~i~~lVlDEah~~l-~~g- 313 (609)
+.+|....++++.+++||.+.. .+.+..+|+|+|+||++| +|+|... ...++.+.++||||||+|| |++
T Consensus 135 ~~~l~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 135 NRPLFEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHHHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 9999999999999999998753 444555799999999999 7888754 2557889999999999999 553
Q ss_pred --------------CHHHHHHHHHHcCCC----------------CCCCceEE------------------------EEE
Q 007280 314 --------------FEPQIRKIVQQMDMP----------------PPGMRQTM------------------------LFS 339 (609)
Q Consensus 314 --------------f~~~i~~i~~~l~~~----------------~~~~~q~i------------------------l~S 339 (609)
|..++..|+..+... .++.+|++ +||
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfs 292 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 292 (853)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccC
Confidence 567888888877320 01245654 899
Q ss_pred eeccHHHHHH-----HHHhhc---CcE----------------------------------EEEecccCCccccee----
Q 007280 340 ATFPKEIQRL-----ASDFLA---NYI----------------------------------FLAVGRVGSSTDLIV---- 373 (609)
Q Consensus 340 AT~~~~~~~l-----~~~~l~---~~~----------------------------------~~~~~~~~~~~~~i~---- 373 (609)
||.+.-+..+ +..++. +|+ .+.+.........|.
T Consensus 293 at~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qny 372 (853)
T 2fsf_A 293 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNY 372 (853)
T ss_dssp ----------------------------------------------------------------CCCCCEEEEEEEHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHH
Confidence 9975422211 111111 010 011111110111111
Q ss_pred -------------------------------------------EEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEE
Q 007280 374 -------------------------------------------QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVF 410 (609)
Q Consensus 374 -------------------------------------------q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF 410 (609)
+.+.++....|...+.+.+..... +..++|||
T Consensus 373 fr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~-----~gqpvLVf 447 (853)
T 2fsf_A 373 FRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTA-----KGQPVLVG 447 (853)
T ss_dssp HTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHT-----TTCCEEEE
T ss_pred HhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhc-----CCCCEEEE
Confidence 112344556677777777765421 25679999
Q ss_pred ecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCc-----------------
Q 007280 411 VETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV----------------- 473 (609)
Q Consensus 411 ~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v----------------- 473 (609)
|+|++.++.|++.|...++++..||+++.+.+++.+.+.|+.| .|+|||++|+||+||+..
T Consensus 448 t~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~ 525 (853)
T 2fsf_A 448 TISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQ 525 (853)
T ss_dssp ESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSH
T ss_pred ECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHH
Confidence 9999999999999999999999999999988998888999988 699999999999999973
Q ss_pred --------------------cEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 474 --------------------AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 474 --------------------~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
.|||+|++|.+...|+||+|||||.|++|.+++|++.+|.
T Consensus 526 ~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 526 IEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999997764
No 29
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=6.4e-46 Score=423.60 Aligned_cols=342 Identities=20% Similarity=0.281 Sum_probs=263.9
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 146 TFAEID--LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 146 ~f~~~~--l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
+|++++ |++.+.+.++.++|.+|+|+|+++++.+++++++++++|||||||++|.+|++..+...
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------- 68 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG------------- 68 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------------
Confidence 477887 99999999999999999999999999999999999999999999999999999887542
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEe
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
.++||++|+++|+.|++++++++.. .++++..++|+....+. ....++|+|+||++|..++.+....++++++||+
T Consensus 69 ~~~l~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 69 GKSLYVVPLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 2399999999999999999976543 47899998988764332 1236899999999999999887666899999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccce--eEEEEEEec
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLI--VQRVEFVHE 381 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i--~q~~~~~~~ 381 (609)
||||++.++++...+..++..+... .+..|+|+||||+++ ...+++ ++...++....+.......+ ...+.+...
T Consensus 145 DE~H~l~~~~r~~~~~~ll~~l~~~-~~~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~ 221 (702)
T 2p6r_A 145 DEIHLLDSEKRGATLEILVTKMRRM-NKALRVIGLSATAPN-VTEIAE-WLDADYYVSDWRPVPLVEGVLCEGTLELFDG 221 (702)
T ss_dssp TTGGGGGCTTTHHHHHHHHHHHHHH-CTTCEEEEEECCCTT-HHHHHH-HTTCEEEECCCCSSCEEEEEECSSEEEEEET
T ss_pred eeeeecCCCCcccHHHHHHHHHHhc-CcCceEEEECCCcCC-HHHHHH-HhCCCcccCCCCCccceEEEeeCCeeeccCc
Confidence 9999999988988888887776321 346899999999985 455554 44433321111110000000 001111111
Q ss_pred cc---hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC------------------------------C
Q 007280 382 SD---KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN------------------------------G 428 (609)
Q Consensus 382 ~~---k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~------------------------------~ 428 (609)
.. +...+.+++..... ...++||||++++.++.+++.|... .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~-----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 296 (702)
T 2p6r_A 222 AFSTSRRVKFEELVEECVA-----ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVR 296 (702)
T ss_dssp TEEEEEECCHHHHHHHHHH-----TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHh-----cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHh
Confidence 11 11113333333332 2677999999999999999988753 1
Q ss_pred CCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEE----cC---CCCCHHHHHHHhhhcccCC--
Q 007280 429 FPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN----FD---LPNDIDDYVHRIGRTGRAG-- 499 (609)
Q Consensus 429 ~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~----~d---~p~s~~~y~QriGRagR~g-- 499 (609)
+.+..+|++|++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.++.+|+||+|||||.|
T Consensus 297 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~ 376 (702)
T 2p6r_A 297 KGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMD 376 (702)
T ss_dssp TTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTC
T ss_pred cCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 35788999999999999999999999999999999999999999999998 77 7899999999999999988
Q ss_pred CCceEEEEEcCCC
Q 007280 500 KSGLATAFFNENN 512 (609)
Q Consensus 500 ~~G~~~~f~~~~~ 512 (609)
..|.|++++++.+
T Consensus 377 ~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 377 ERGEAIIIVGKRD 389 (702)
T ss_dssp SCEEEEEECCGGG
T ss_pred CCceEEEEecCcc
Confidence 4899999998766
No 30
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=7.4e-46 Score=436.72 Aligned_cols=325 Identities=18% Similarity=0.268 Sum_probs=263.1
Q ss_pred HHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHH
Q 007280 161 RRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (609)
Q Consensus 161 ~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~ 240 (609)
+.++|. | |+|+++|+.+++++|+|++||||||||+ |++|++..+.... +++|||+||++||.|++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~------------~~~lil~PtreLa~Q~~ 116 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKG------------KRCYVIFPTSLLVIQAA 116 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTS------------CCEEEEESCHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcC------------CeEEEEeccHHHHHHHH
Confidence 357999 9 9999999999999999999999999998 9999988776421 45999999999999999
Q ss_pred HHHHHhhccCCe----EEEEEECCcChHHH---HHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcC
Q 007280 241 VEAKKFSYQTGV----KVVVAYGGAPINQQ---LRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG 313 (609)
Q Consensus 241 ~~~~~~~~~~~i----~~~~~~gg~~~~~~---~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~g 313 (609)
+.+++++...++ ++.+++|+.+..++ ...+.. ++|+|+||++|++++.+ ++++++|||||||+|++
T Consensus 117 ~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~-- 189 (1054)
T 1gku_B 117 ETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK-- 189 (1054)
T ss_dssp HHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--
T ss_pred HHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--
Confidence 999999988888 89999999887664 444455 99999999999998765 67899999999999998
Q ss_pred CHHHHHHHHHHcCCC-------CCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHH
Q 007280 314 FEPQIRKIVQQMDMP-------PPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRS 386 (609)
Q Consensus 314 f~~~i~~i~~~l~~~-------~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~ 386 (609)
|..+++.++..+... .+...|+++||||++.. ..++..++.++..+.+.........+.+.+. ...+..
T Consensus 190 ~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~ 265 (1054)
T 1gku_B 190 ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESIS 265 (1054)
T ss_dssp STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTT
T ss_pred ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHH
Confidence 568888888876321 12457899999999887 5555555555444444333334455555443 455666
Q ss_pred HHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEE----cc
Q 007280 387 HLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVA----TD 462 (609)
Q Consensus 387 ~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVa----T~ 462 (609)
.|.+++... ..++||||++++.|+.+++.|... +.+..+||++ +++++.|++|+.+|||| |+
T Consensus 266 ~L~~ll~~~--------~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Td 331 (1054)
T 1gku_B 266 TLSSILEKL--------GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYG 331 (1054)
T ss_dssp TTHHHHTTS--------CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC---
T ss_pred HHHHHHhhc--------CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCC
Confidence 666666432 456999999999999999999888 9999999998 47889999999999999 99
Q ss_pred ccccCCCCCCc-cEEEEcCCC-----------------------------------------------------------
Q 007280 463 VAARGLDIPHV-AHVVNFDLP----------------------------------------------------------- 482 (609)
Q Consensus 463 v~~~GlDip~v-~~VI~~d~p----------------------------------------------------------- 482 (609)
++++|||+|+| ++||+||+|
T Consensus 332 v~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (1054)
T 1gku_B 332 TLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQA 411 (1054)
T ss_dssp ---CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSC
T ss_pred eeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999996 999999999
Q ss_pred ------------CCHHHHHHHhhhcccCCCCc--eEEEEEcCCChhhHHHHHHHHHH
Q 007280 483 ------------NDIDDYVHRIGRTGRAGKSG--LATAFFNENNMSLARPLTELMQE 525 (609)
Q Consensus 483 ------------~s~~~y~QriGRagR~g~~G--~~~~f~~~~~~~~~~~l~~~l~~ 525 (609)
.++.+|+||+|||||.|+.| .+++|+..++...+..|.+.++.
T Consensus 412 ~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 412 KDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp SSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999988776 48888888888888888888774
No 31
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=6.3e-45 Score=403.98 Aligned_cols=339 Identities=19% Similarity=0.236 Sum_probs=262.3
Q ss_pred HCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 162 ~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
.+|+ .|+++|..++|.+++|+ |++++||+|||++|++|++...+... .++||+||++||.|+++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~-------------~v~VvTpTreLA~Qdae 170 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGN-------------GVHIVTVNDYLAKRDSE 170 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTS-------------CEEEEESSHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCC-------------CeEEEeCCHHHHHHHHH
Confidence 4688 99999999999999998 99999999999999999986655321 29999999999999999
Q ss_pred HHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHcc------cccccceEEEEeccchhhh-hc-
Q 007280 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DM- 312 (609)
Q Consensus 242 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~------~~~l~~i~~lVlDEah~~l-~~- 312 (609)
++..|...+++++.+++||.+... +.+..+|+|+|+||++| +|+|... .+.+..+.++||||||+|| |+
T Consensus 171 ~m~~l~~~lGLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDea 248 (922)
T 1nkt_A 171 WMGRVHRFLGLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEA 248 (922)
T ss_dssp HHHHHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGG
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcC
Confidence 999999999999999999987543 33445699999999999 7888654 3567889999999999999 53
Q ss_pred --------------CCHHHHHHHHHHcCCC-----CCCCceEE-----------------EEEeeccH---HHHHHH--H
Q 007280 313 --------------GFEPQIRKIVQQMDMP-----PPGMRQTM-----------------LFSATFPK---EIQRLA--S 351 (609)
Q Consensus 313 --------------gf~~~i~~i~~~l~~~-----~~~~~q~i-----------------l~SAT~~~---~~~~l~--~ 351 (609)
+|..++..|+..+... ..+.+|++ +||||.+. .+...+ .
T Consensus 249 rtPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~ 328 (922)
T 1nkt_A 249 RTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAK 328 (922)
T ss_dssp GSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHH
T ss_pred ccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHH
Confidence 5788999999998310 01578898 99999764 333322 2
Q ss_pred Hhhc---CcE-----EEEeccc-C----------------------------Cccccee---------------------
Q 007280 352 DFLA---NYI-----FLAVGRV-G----------------------------SSTDLIV--------------------- 373 (609)
Q Consensus 352 ~~l~---~~~-----~~~~~~~-~----------------------------~~~~~i~--------------------- 373 (609)
.++. +|+ .+.++.. + .....|.
T Consensus 329 ~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te 408 (922)
T 1nkt_A 329 ELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTE 408 (922)
T ss_dssp HHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhH
Confidence 2222 111 1111100 0 0000000
Q ss_pred --------------------------EEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC
Q 007280 374 --------------------------QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (609)
Q Consensus 374 --------------------------q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~ 427 (609)
+.+.++....|...+.+.+..... ...++||||+|++.++.|++.|...
T Consensus 409 ~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~-----~gqpvLVft~Sie~sE~Ls~~L~~~ 483 (922)
T 1nkt_A 409 AAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA-----KGQPVLIGTTSVERSEYLSRQFTKR 483 (922)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH-----TTCCEEEEESCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh-----cCCcEEEEECCHHHHHHHHHHHHHC
Confidence 112334455677777777765432 2567999999999999999999999
Q ss_pred CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCc----------------------------------
Q 007280 428 GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHV---------------------------------- 473 (609)
Q Consensus 428 ~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v---------------------------------- 473 (609)
++++..||+++.+.+++.+.+.|+.| .|+|||++|+||+||+.+
T Consensus 484 Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (922)
T 1nkt_A 484 RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELP 561 (922)
T ss_dssp TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHH
T ss_pred CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 99999999999888888888888877 699999999999999975
Q ss_pred ------------------cEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhH----HHHHHHHHH
Q 007280 474 ------------------AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLA----RPLTELMQE 525 (609)
Q Consensus 474 ------------------~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~----~~l~~~l~~ 525 (609)
.|||+|++|.+...|+||+|||||.|.+|.+++|++.+|.-+. ..+..++..
T Consensus 562 ~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~ 635 (922)
T 1nkt_A 562 IVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTR 635 (922)
T ss_dssp HHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHH
Confidence 5999999999999999999999999999999999998775322 335555544
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=5.7e-45 Score=425.70 Aligned_cols=340 Identities=21% Similarity=0.226 Sum_probs=209.4
Q ss_pred HHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHH
Q 007280 161 RRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (609)
Q Consensus 161 ~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~ 240 (609)
...++.+|+|+|.++|+.+++++++|++++||+|||++|++|++..+..... ...+.+|||+||++|+.|++
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~vLvl~Pt~~L~~Q~~ 313 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQK 313 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS--------SCCCCEEEECSSHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc--------cCCCeEEEEeCCHHHHHHHH
Confidence 3446889999999999999999999999999999999999999876654321 11234999999999999999
Q ss_pred HHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccc-cccceEEEEeccchhhhhcC-CHHHH
Q 007280 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMG-FEPQI 318 (609)
Q Consensus 241 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~-~l~~i~~lVlDEah~~l~~g-f~~~i 318 (609)
+++++++...++++.+++|+.....+...+..+++|+|+||++|.+++....+ .+..+++|||||||++...+ +...+
T Consensus 314 ~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~ 393 (936)
T 4a2w_A 314 NVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLM 393 (936)
T ss_dssp HHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHH
Confidence 99999998889999999999977766666667799999999999999988766 78899999999999998765 22333
Q ss_pred HHHHHHcCCCCCCCceEEEEEeecc-----------HHHHHHHHHhhcCcEEEEecc---cCCcccceeEEEEEEe----
Q 007280 319 RKIVQQMDMPPPGMRQTMLFSATFP-----------KEIQRLASDFLANYIFLAVGR---VGSSTDLIVQRVEFVH---- 380 (609)
Q Consensus 319 ~~i~~~l~~~~~~~~q~il~SAT~~-----------~~~~~l~~~~l~~~~~~~~~~---~~~~~~~i~q~~~~~~---- 380 (609)
..++...........|+++||||+. ..+..+...+-...+...... ...........+..+.
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 473 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIH 473 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSC
T ss_pred HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccC
Confidence 3333332122245578999999984 223333322211111100000 0000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007280 381 -------------------------------------------------------------------------------- 380 (609)
Q Consensus 381 -------------------------------------------------------------------------------- 380 (609)
T Consensus 474 ~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~ 553 (936)
T 4a2w_A 474 NPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN 553 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------ccchHHHHHHHHHHHHhcCcCCC
Q 007280 381 ---------------------------------------------------------ESDKRSHLMDLLHAQVANGVHGK 403 (609)
Q Consensus 381 ---------------------------------------------------------~~~k~~~l~~~l~~~~~~~~~~~ 403 (609)
...|...|.++|..... ...
T Consensus 554 ~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~---~~~ 630 (936)
T 4a2w_A 554 DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR---YNP 630 (936)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTT---SCT
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhc---cCC
Confidence 01122223333322211 134
Q ss_pred CceEEEEecchhhHHHHHHHHHhC------------CCCcEEecCccCHHHHHHHHHhhhc-CCCcEEEEccccccCCCC
Q 007280 404 QALTLVFVETKKGADALEHWLYMN------------GFPATTIHGDRTQQERELALRSFKS-GKTPILVATDVAARGLDI 470 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~------------~~~~~~ihg~~~~~~R~~~~~~F~~-g~~~ILVaT~v~~~GlDi 470 (609)
..++||||++++.++.|+++|... |.....+||+|++.+|.+++++|++ |+++|||||+++++|||+
T Consensus 631 ~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDl 710 (936)
T 4a2w_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI 710 (936)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------C
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcc
Confidence 688999999999999999999976 4555667899999999999999999 999999999999999999
Q ss_pred CCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 471 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 471 p~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
|+|++||+||+|+|+..|+||+|| ||. +.|.+++|++..+.
T Consensus 711 p~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 711 VQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred hhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999999999999 999 88999999987554
No 33
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-43 Score=410.82 Aligned_cols=315 Identities=20% Similarity=0.254 Sum_probs=248.1
Q ss_pred HCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 162 ~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
.++|. |+|+|+++|+.++++++++++||||||||++|++|++..+... .++||++||++|+.|+++
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g-------------~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-------------QRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT-------------CEEEEEESSHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC-------------CeEEEECChHHHHHHHHH
Confidence 34664 9999999999999999999999999999999999988776322 349999999999999999
Q ss_pred HHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHH
Q 007280 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKI 321 (609)
Q Consensus 242 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i 321 (609)
+++++.. ++.+++|+.... ..++|+|+||++|.+++.+....+.++++|||||||+|.++++...+..+
T Consensus 148 ~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 148 ELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp HHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred HHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 9998754 566778877643 35799999999999999887778999999999999999999999999999
Q ss_pred HHHcCCCCCCCceEEEEEeeccHHHH--HHHHHhhcCcEEEEecccCCcccceeEEEEE---------Eeccc-------
Q 007280 322 VQQMDMPPPGMRQTMLFSATFPKEIQ--RLASDFLANYIFLAVGRVGSSTDLIVQRVEF---------VHESD------- 383 (609)
Q Consensus 322 ~~~l~~~~~~~~q~il~SAT~~~~~~--~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~---------~~~~~------- 383 (609)
+..+ +...|+|+||||+++..+ .++......+..+....... ..+.+.+.. ++...
T Consensus 217 l~~l----~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1010)
T 2xgj_A 217 IILL----PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENF 290 (1010)
T ss_dssp HHHS----CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHH
T ss_pred HHhc----CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHH
Confidence 9888 667899999999986432 33333334444443332111 112222111 11000
Q ss_pred ----------------------------h--------HHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC
Q 007280 384 ----------------------------K--------RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (609)
Q Consensus 384 ----------------------------k--------~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~ 427 (609)
| ...+..++...... ...++||||++++.|+.+++.|...
T Consensus 291 ~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~----~~~~~IVF~~sr~~~e~la~~L~~~ 366 (1010)
T 2xgj_A 291 QKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK----KYNPVIVFSFSKRDCEELALKMSKL 366 (1010)
T ss_dssp HHHHHTCC------------------------------CHHHHHHHHHHHH----TCCSEEEEESSHHHHHHHHHTTTTS
T ss_pred HHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc----CCCCEEEEECCHHHHHHHHHHHHhC
Confidence 0 11222333322211 2457999999999999999998765
Q ss_pred CCC---------------------------------------cEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCC
Q 007280 428 GFP---------------------------------------ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGL 468 (609)
Q Consensus 428 ~~~---------------------------------------~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~Gl 468 (609)
++. +..+||+|++.+|+.+++.|++|.++|||||+++++||
T Consensus 367 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GI 446 (1010)
T 2xgj_A 367 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 446 (1010)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGST
T ss_pred CCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccC
Confidence 442 67899999999999999999999999999999999999
Q ss_pred CCCCccEEEE----cCC----CCCHHHHHHHhhhcccCCC--CceEEEEEcCC
Q 007280 469 DIPHVAHVVN----FDL----PNDIDDYVHRIGRTGRAGK--SGLATAFFNEN 511 (609)
Q Consensus 469 Dip~v~~VI~----~d~----p~s~~~y~QriGRagR~g~--~G~~~~f~~~~ 511 (609)
|+|++++||+ ||. |.++.+|+||+|||||.|+ .|.|++|+++.
T Consensus 447 DiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 447 NMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp TCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9999999999 999 8999999999999999997 59999999865
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.6e-43 Score=383.51 Aligned_cols=325 Identities=22% Similarity=0.230 Sum_probs=247.6
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
+|+|+|.++++.++++ ++|++++||+|||++++++++..+... . ..+|||+|+++|+.||.++++++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~--~----------~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY--G----------GKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHS--C----------SCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcC--C----------CeEEEEECCHHHHHHHHHHHHHH
Confidence 6999999999999988 999999999999999999988776511 1 23999999999999999999998
Q ss_pred hccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcC
Q 007280 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 326 (609)
Q Consensus 247 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~ 326 (609)
......++..++|+....+.. .+...++|+|+||++|.+.+....+.+..+++|||||||++.+......+...+...
T Consensus 76 ~~~~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~- 153 (494)
T 1wp9_A 76 FNLPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ- 153 (494)
T ss_dssp BCSCGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH-
T ss_pred hCcchhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhc-
Confidence 654455888888887765443 333468999999999999998877788999999999999998655444455555444
Q ss_pred CCCCCCceEEEEEeeccH---HHHHHHHHhhcCcEEEEecccCCcc---cceeEEEEEE---------------------
Q 007280 327 MPPPGMRQTMLFSATFPK---EIQRLASDFLANYIFLAVGRVGSST---DLIVQRVEFV--------------------- 379 (609)
Q Consensus 327 ~~~~~~~q~il~SAT~~~---~~~~l~~~~l~~~~~~~~~~~~~~~---~~i~q~~~~~--------------------- 379 (609)
....++++||||+.. ++..+...+....+.+......... ......+..+
T Consensus 154 ---~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (494)
T 1wp9_A 154 ---AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDAL 230 (494)
T ss_dssp ---CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 345789999999963 3444444332222221111000000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007280 380 -------------------------------------------------------------------------------- 379 (609)
Q Consensus 380 -------------------------------------------------------------------------------- 379 (609)
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (494)
T 1wp9_A 231 KPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKA 310 (494)
T ss_dssp HHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhcc
Confidence
Q ss_pred -----------------------------eccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCC
Q 007280 380 -----------------------------HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (609)
Q Consensus 380 -----------------------------~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~ 430 (609)
....|...|.++|...... ....++||||++++.++.+++.|...++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~~~~ 387 (494)
T 1wp9_A 311 GSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR---KQNSKIIVFTNYRETAKKIVNELVKDGIK 387 (494)
T ss_dssp TCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH---CTTCCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhcc---CCCCeEEEEEccHHHHHHHHHHHHHcCCC
Confidence 1122344445555443321 23778999999999999999999999999
Q ss_pred cEEecC--------ccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCc
Q 007280 431 ATTIHG--------DRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 502 (609)
Q Consensus 431 ~~~ihg--------~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G 502 (609)
+..+|| ++++.+|++++++|++|+.+|||||+++++|||+|++++||+||+|+++..|+||+||++|.|+ |
T Consensus 388 ~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g 466 (494)
T 1wp9_A 388 AKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-G 466 (494)
T ss_dssp EEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-S
T ss_pred cEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-c
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred eEEEEEcCCCh
Q 007280 503 LATAFFNENNM 513 (609)
Q Consensus 503 ~~~~f~~~~~~ 513 (609)
.++.|+++.+.
T Consensus 467 ~~~~l~~~~t~ 477 (494)
T 1wp9_A 467 RVIILMAKGTR 477 (494)
T ss_dssp EEEEEEETTSH
T ss_pred eEEEEEecCCH
Confidence 99999998764
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.3e-44 Score=411.31 Aligned_cols=332 Identities=22% Similarity=0.313 Sum_probs=229.2
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHH-HHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HVEAK 244 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi-~~~~~ 244 (609)
.+|+|+|.++|+.+++++++|+++|||+|||++|++|++..+....... ....+|||+||++|+.|+ +++++
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~-------~~~~vlvl~P~~~L~~Q~~~~~l~ 78 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKAS-------EPGKVIVLVNKVLLVEQLFRKEFQ 78 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHT-------CCCCBCCEESCSHHHHHHHHHTHH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccC-------CCCeEEEEECCHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999998887653211 012389999999999999 99999
Q ss_pred HhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHH------HcccccccceEEEEeccchhhhhcC-CHHH
Q 007280 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL------ERARVSLQMIRYLALDEADRMLDMG-FEPQ 317 (609)
Q Consensus 245 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l------~~~~~~l~~i~~lVlDEah~~l~~g-f~~~ 317 (609)
++... .+++..++|+.....+...+...++|+|+||++|.+.+ ....+.+..+++|||||||++.... +...
T Consensus 79 ~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i 157 (699)
T 4gl2_A 79 PFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 157 (699)
T ss_dssp HHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSH
T ss_pred HHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHH
Confidence 98765 48899999998777666667778999999999999988 4445678899999999999986544 3333
Q ss_pred HHHHHHHc---------CCCCCCCceEEEEEeeccH-----------HHHHHHHHhhcCcEEEEecc---cCCcccceeE
Q 007280 318 IRKIVQQM---------DMPPPGMRQTMLFSATFPK-----------EIQRLASDFLANYIFLAVGR---VGSSTDLIVQ 374 (609)
Q Consensus 318 i~~i~~~l---------~~~~~~~~q~il~SAT~~~-----------~~~~l~~~~l~~~~~~~~~~---~~~~~~~i~q 374 (609)
+..++... .....+..++|+||||+.. .+..+...+....+...... ..........
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~ 237 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCK 237 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEE
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCce
Confidence 33332221 0111245689999999975 22333322211011000000 0000000001
Q ss_pred EEEEEe--------------------------------------------------------------------------
Q 007280 375 RVEFVH-------------------------------------------------------------------------- 380 (609)
Q Consensus 375 ~~~~~~-------------------------------------------------------------------------- 380 (609)
.+..+.
T Consensus 238 ~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (699)
T 4gl2_A 238 KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTI 317 (699)
T ss_dssp EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 111110
Q ss_pred -------------------------------------------------------------ccchHHHHHHHHHHHHhcC
Q 007280 381 -------------------------------------------------------------ESDKRSHLMDLLHAQVANG 399 (609)
Q Consensus 381 -------------------------------------------------------------~~~k~~~l~~~l~~~~~~~ 399 (609)
...|...|.++|.......
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~ 397 (699)
T 4gl2_A 318 RMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRT 397 (699)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 1122223333443332221
Q ss_pred cCCCCceEEEEecchhhHHHHHHHHHhC------CCCcEEecCc--------cCHHHHHHHHHhhhcCCCcEEEEccccc
Q 007280 400 VHGKQALTLVFVETKKGADALEHWLYMN------GFPATTIHGD--------RTQQERELALRSFKSGKTPILVATDVAA 465 (609)
Q Consensus 400 ~~~~~~k~lVF~~t~~~~~~l~~~L~~~------~~~~~~ihg~--------~~~~~R~~~~~~F~~g~~~ILVaT~v~~ 465 (609)
.+..++||||++++.++.|+++|... ++.+..+||+ |++.+|.+++++|++|+.+|||||++++
T Consensus 398 --~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~ 475 (699)
T 4gl2_A 398 --EESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAE 475 (699)
T ss_dssp --SSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCC
T ss_pred --CCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Confidence 11678999999999999999999987 8999999999 9999999999999999999999999999
Q ss_pred cCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcC
Q 007280 466 RGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 510 (609)
Q Consensus 466 ~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~ 510 (609)
+|||+|+|++||+||+|+|+..|+||+||++|.| .+++|+..
T Consensus 476 ~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 476 EGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp TTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred cCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 9999999999999999999999999999976543 45555543
No 36
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.4e-44 Score=400.88 Aligned_cols=324 Identities=17% Similarity=0.150 Sum_probs=242.0
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEE
Q 007280 150 IDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALIL 229 (609)
Q Consensus 150 ~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil 229 (609)
+.+++.+.+.|... +.+|+|+|+++++.+++++|+|++|+||||||++|++|+++.+.... +++|||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~------------~~vLvl 221 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRR------------LRTLIL 221 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT------------CCEEEE
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCC------------CeEEEE
Confidence 44555555544433 57899999999999999999999999999999999999999887532 349999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhh
Q 007280 230 APTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (609)
Q Consensus 230 ~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~ 309 (609)
+|||+||.|+++.++.+ .+. +..... . .....+..|.++|.+.|...+... ..+.++++|||||||+|
T Consensus 222 ~PtreLa~Qi~~~l~~~------~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~ 289 (618)
T 2whx_A 222 APTRVVAAEMEEALRGL------PIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT 289 (618)
T ss_dssp ESSHHHHHHHHHHTTTS------CEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC
T ss_pred cChHHHHHHHHHHhcCC------cee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC
Confidence 99999999998877632 222 111110 0 001123567788988888766654 34889999999999998
Q ss_pred hhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHH
Q 007280 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLM 389 (609)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~ 389 (609)
+++|...+..|+..+. ...+|+|+||||++..+..++. .++..+.+... ++ ..+...++
T Consensus 290 -~~~~~~~~~~i~~~l~---~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~-~~~~~~ll 348 (618)
T 2whx_A 290 -DPCSVAARGYISTRVE---MGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IP-ERSWNTGF 348 (618)
T ss_dssp -SHHHHHHHHHHHHHHH---HTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CC-SSCCSSSC
T ss_pred -CccHHHHHHHHHHHhc---ccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CC-HHHHHHHH
Confidence 7778888888887762 2568999999999876443222 12222222111 01 11112233
Q ss_pred HHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCC
Q 007280 390 DLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLD 469 (609)
Q Consensus 390 ~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlD 469 (609)
..+... ..++||||++++.++.+++.|...++.+..+|++ +|+++++.|++|+.+|||||+++++|||
T Consensus 349 ~~l~~~--------~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiD 416 (618)
T 2whx_A 349 DWITDY--------QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGAN 416 (618)
T ss_dssp HHHHHC--------CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCC
T ss_pred HHHHhC--------CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcc
Confidence 333321 5579999999999999999999999999999984 7888999999999999999999999999
Q ss_pred CCCccEE--------------------EEcCCCCCHHHHHHHhhhcccCCC-CceEEEEEc---CCChhhHHHHHHHHHH
Q 007280 470 IPHVAHV--------------------VNFDLPNDIDDYVHRIGRTGRAGK-SGLATAFFN---ENNMSLARPLTELMQE 525 (609)
Q Consensus 470 ip~v~~V--------------------I~~d~p~s~~~y~QriGRagR~g~-~G~~~~f~~---~~~~~~~~~l~~~l~~ 525 (609)
|| |++| |+||+|.+.++|+||+|||||.|. +|.|++|++ +.+...+..+.+.+..
T Consensus 417 i~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l 495 (618)
T 2whx_A 417 FR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLL 495 (618)
T ss_dssp CC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHH
T ss_pred cC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhcc
Confidence 97 9888 788889999999999999999965 999999998 7888888888888776
Q ss_pred hcccchH
Q 007280 526 ANQEVPA 532 (609)
Q Consensus 526 ~~q~vp~ 532 (609)
...++|.
T Consensus 496 ~~~~~~~ 502 (618)
T 2whx_A 496 DNIYTPE 502 (618)
T ss_dssp TTCCCTT
T ss_pred ccccCCc
Confidence 5555544
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-42 Score=394.21 Aligned_cols=334 Identities=18% Similarity=0.235 Sum_probs=246.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHhhHhCC------CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEE
Q 007280 154 EALNLNIRRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227 (609)
Q Consensus 154 ~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~------~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~L 227 (609)
+.+.+.+..++| +||++|+++|+.++++ ++++++++||||||++|++|++..+... .++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-------------~qvl 421 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-------------FQTA 421 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-------------SCEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-------------CeEE
Confidence 445555678899 9999999999988864 5899999999999999999999877532 2399
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHH---HHHHhcC-CCEEEeChHHHHHHHHcccccccceEEEEe
Q 007280 228 ILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQ---LRELERG-VDILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 228 il~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~~-~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
||+||++||.|++++++++....++++.+++|+....+. +..+..+ ++|+|+||+.|.+ .+.+.++++||+
T Consensus 422 vlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVI 496 (780)
T 1gm5_A 422 FMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVII 496 (780)
T ss_dssp EECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEE
T ss_pred EEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEe
Confidence 999999999999999999988888999999999876654 3344444 8999999998754 356889999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccc
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~ 383 (609)
||+|++... . +. .+.. .....++++||||+.+....+. +..+.....+.........+. ..+....
T Consensus 497 DEaHr~g~~---q--r~---~l~~-~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~---~~~~~~~ 562 (780)
T 1gm5_A 497 DEQHRFGVK---Q--RE---ALMN-KGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQ---TMLVPMD 562 (780)
T ss_dssp ESCCCC----------C---CCCS-SSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCE---ECCCCSS
T ss_pred cccchhhHH---H--HH---HHHH-hCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceE---EEEeccc
Confidence 999995321 1 11 1111 1245789999999866543322 222221111211111111221 1122334
Q ss_pred hHHHHHHHHHHHHhcCcCCCCceEEEEecchh--------hHHHHHHHHHh---CCCCcEEecCccCHHHHHHHHHhhhc
Q 007280 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKK--------GADALEHWLYM---NGFPATTIHGDRTQQERELALRSFKS 452 (609)
Q Consensus 384 k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~--------~~~~l~~~L~~---~~~~~~~ihg~~~~~~R~~~~~~F~~ 452 (609)
+...+++.+..... ...+++|||++++ .++.+++.|.. .++.+..+||+|++.+|+++++.|++
T Consensus 563 ~~~~l~~~i~~~l~-----~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~ 637 (780)
T 1gm5_A 563 RVNEVYEFVRQEVM-----RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE 637 (780)
T ss_dssp THHHHHHHHHHHTT-----TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT
T ss_pred hHHHHHHHHHHHHh-----cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHC
Confidence 45566666665543 2567899999764 46788888877 46789999999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCccEEEEcCCCC-CHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHh
Q 007280 453 GKTPILVATDVAARGLDIPHVAHVVNFDLPN-DIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEA 526 (609)
Q Consensus 453 g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~-s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~ 526 (609)
|+++|||||+++++|||+|++++||++|.|. +.+.|.||+||+||.|++|.|++++++.+... ....+.+.+.
T Consensus 638 G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~-~~rl~~l~~~ 711 (780)
T 1gm5_A 638 GRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEA-MERLRFFTLN 711 (780)
T ss_dssp TSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHH-HHHHHHHHTC
T ss_pred CCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHH-HHHHHHHHhh
Confidence 9999999999999999999999999999996 78999999999999999999999998444333 3333344443
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.1e-41 Score=397.97 Aligned_cols=308 Identities=20% Similarity=0.281 Sum_probs=237.8
Q ss_pred CCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHH
Q 007280 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (609)
Q Consensus 164 ~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~ 243 (609)
+| +|+|+|.++|+.+++++++++++|||||||++|++|++..+... +++||++||++|+.|+++++
T Consensus 37 ~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g-------------~~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 37 PF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM-------------TKTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp SS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT-------------CEEEEEESCGGGHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC-------------CeEEEEeCCHHHHHHHHHHH
Confidence 44 58999999999999999999999999999999999887654321 34999999999999999999
Q ss_pred HHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHH
Q 007280 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQ 323 (609)
Q Consensus 244 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~ 323 (609)
+++.. ++++..++|+.... ..++|+|+||++|.+++......+..+++|||||||++.+++|...+..++.
T Consensus 103 ~~~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~ 173 (997)
T 4a4z_A 103 KETFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVII 173 (997)
T ss_dssp HTTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHH
T ss_pred HHHcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHH
Confidence 88643 57788888887533 3479999999999999988777789999999999999999999999999999
Q ss_pred HcCCCCCCCceEEEEEeeccHHHHHHHHHhhc---CcEEEEecccCCcccceeEEE-------EEEe-------------
Q 007280 324 QMDMPPPGMRQTMLFSATFPKEIQRLASDFLA---NYIFLAVGRVGSSTDLIVQRV-------EFVH------------- 380 (609)
Q Consensus 324 ~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~---~~~~~~~~~~~~~~~~i~q~~-------~~~~------------- 380 (609)
.+ +...|+|+||||+++.. +++..+.. ..+.+...... ...+.+.+ ..+.
T Consensus 174 ~l----~~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 246 (997)
T 4a4z_A 174 ML----PQHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR--PVPLEINIWAKKELIPVINQNSEFLEANFRKH 246 (997)
T ss_dssp HS----CTTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC--SSCEEEEEEETTEEEEEECTTCCBCHHHHHHH
T ss_pred hc----ccCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCC--CccceEEEecCCcchhcccchhhhhHHHHHHH
Confidence 88 67789999999997653 44443321 22222221111 00111111 0000
Q ss_pred -------------------------------------------------------------------------ccchHHH
Q 007280 381 -------------------------------------------------------------------------ESDKRSH 387 (609)
Q Consensus 381 -------------------------------------------------------------------------~~~k~~~ 387 (609)
...+...
T Consensus 247 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (997)
T 4a4z_A 247 KEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPE 326 (997)
T ss_dssp HHHHC-----------------------------------------------------------------CCCCTTHHHH
T ss_pred HHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHH
Confidence 0111222
Q ss_pred HHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCC--------------------------------------
Q 007280 388 LMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGF-------------------------------------- 429 (609)
Q Consensus 388 l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~-------------------------------------- 429 (609)
+++.+... ...++||||++++.|+.+++.|...++
T Consensus 327 li~~l~~~-------~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 327 IVNYLRKR-------ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp HHHHHHHT-------TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHhC-------CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 33333221 256799999999999999999976655
Q ss_pred -CcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCC---------CHHHHHHHhhhcccCC
Q 007280 430 -PATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPN---------DIDDYVHRIGRTGRAG 499 (609)
Q Consensus 430 -~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~---------s~~~y~QriGRagR~g 499 (609)
.+..+|++|++.+|+.+++.|++|.++|||||+++++|||+|+ ..||++++|. ++.+|+||+|||||.|
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G 478 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRG 478 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCC
Confidence 4689999999999999999999999999999999999999999 5555555544 9999999999999998
Q ss_pred --CCceEEEEEc
Q 007280 500 --KSGLATAFFN 509 (609)
Q Consensus 500 --~~G~~~~f~~ 509 (609)
..|.|++++.
T Consensus 479 ~~~~G~vi~l~~ 490 (997)
T 4a4z_A 479 LDSTGTVIVMAY 490 (997)
T ss_dssp TCSSEEEEEECC
T ss_pred CCcceEEEEecC
Confidence 5788888873
No 39
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.1e-42 Score=376.21 Aligned_cols=312 Identities=16% Similarity=0.139 Sum_probs=226.9
Q ss_pred CCCCCCHHHHHHHhhHhCCCCc-eeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 164 KYVKPTPVQRHAIPISIGGRDL-MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 164 ~~~~pt~iQ~~~i~~i~~~~d~-ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
|+.+|+|+|+ +||.+++++++ |+++|||||||++|++|++..+.... +++||++||++||.|++++
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~------------~~~lvl~Ptr~La~Q~~~~ 67 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRR------------LRTLILAPTRVVAAEMEEA 67 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT------------CCEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC------------CcEEEECCCHHHHHHHHHH
Confidence 5788999985 79999998887 89999999999999999998876532 3499999999999999888
Q ss_pred HHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHH
Q 007280 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~ 322 (609)
+..+ .+......... ....+..|.|+|++.|.+.+... ..+.++++|||||||++ +..+...+..+.
T Consensus 68 l~g~------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~ 134 (451)
T 2jlq_A 68 LRGL------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYIS 134 (451)
T ss_dssp TTTS------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHH
T ss_pred hcCc------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHH
Confidence 7532 22211111110 11234579999999998888655 45889999999999976 444444443343
Q ss_pred HHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCC
Q 007280 323 QQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHG 402 (609)
Q Consensus 323 ~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 402 (609)
.... .+..|+|+||||++..+..+ +..++..+.+..... ......+.+.+..
T Consensus 135 ~~~~---~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p--------------~~~~~~~~~~l~~-------- 186 (451)
T 2jlq_A 135 TRVE---MGEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREIP--------------ERSWNTGFDWITD-------- 186 (451)
T ss_dssp HHHH---TTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCCC--------------SSCCSSSCHHHHH--------
T ss_pred Hhhc---CCCceEEEEccCCCccchhh---hcCCCceEecCccCC--------------chhhHHHHHHHHh--------
Confidence 3321 34689999999998754321 222333232221100 0000112222322
Q ss_pred CCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcC--
Q 007280 403 KQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFD-- 480 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d-- 480 (609)
...++||||++++.++.+++.|...++.+..+|+++. +++++.|++|+.+|||||+++++|||||+ ++|||||
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~ 261 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRC 261 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCc
Confidence 1457999999999999999999999999999999754 57899999999999999999999999999 9999999
Q ss_pred ------------------CCCCHHHHHHHhhhcccCCC-CceEEEEEcCCC---hhhHHHHHHHHHHhcccchHHH
Q 007280 481 ------------------LPNDIDDYVHRIGRTGRAGK-SGLATAFFNENN---MSLARPLTELMQEANQEVPAWL 534 (609)
Q Consensus 481 ------------------~p~s~~~y~QriGRagR~g~-~G~~~~f~~~~~---~~~~~~l~~~l~~~~q~vp~~l 534 (609)
.|.+.++|+||+|||||.|+ +|.|++|+...+ ..+...+...+...+.++|+++
T Consensus 262 ~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 262 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred ccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 99999999999999999998 899988875432 2233333455556666777655
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.1e-40 Score=405.60 Aligned_cols=350 Identities=17% Similarity=0.203 Sum_probs=256.3
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHhhHhC-CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEc
Q 007280 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIG-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA 230 (609)
Q Consensus 152 l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~-~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~ 230 (609)
|.+...+++...+|..++|+|.++++.++. +++++++||||||||++|.+||+..+.+... .++|||+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~-----------~kavyi~ 979 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSE-----------GRCVYIT 979 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTT-----------CCEEEEC
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCC-----------CEEEEEc
Confidence 456677777778899999999999999975 5779999999999999999999998876432 2399999
Q ss_pred CcHHHHHHHHHHHHH-hhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccc--ccccceEEEEeccch
Q 007280 231 PTRELSSQIHVEAKK-FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEAD 307 (609)
Q Consensus 231 Ptr~La~Qi~~~~~~-~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~--~~l~~i~~lVlDEah 307 (609)
|+++||.|+++++++ |....++++..++|+...... ....++|+||||++|..++.+.. ..++++++||+||+|
T Consensus 980 P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 980 PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred ChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 999999999998865 667788999998887653322 22358999999999987776532 347899999999999
Q ss_pred hhhhcCCHHHHHHHHHHcC---CCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccch
Q 007280 308 RMLDMGFEPQIRKIVQQMD---MPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDK 384 (609)
Q Consensus 308 ~~l~~gf~~~i~~i~~~l~---~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k 384 (609)
+|.+. +...+..++..+. ...+...|+|+||||+++ ..++++++-.+...+...........+...+........
T Consensus 1057 ~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~ 1134 (1724)
T 4f92_B 1057 LIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHT 1134 (1724)
T ss_dssp GGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSH
T ss_pred hcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCc
Confidence 88764 5666666665442 122456899999999975 455665543322111111111111223333333332222
Q ss_pred HHHHH---HHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC----------------------------------
Q 007280 385 RSHLM---DLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN---------------------------------- 427 (609)
Q Consensus 385 ~~~l~---~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~---------------------------------- 427 (609)
...+. +.+...+.. .....++||||++++.|+.++..|...
T Consensus 1135 ~~~~~~~~~~~~~~i~~--~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l 1212 (1724)
T 4f92_B 1135 QTRLLSMAKPVYHAITK--HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETL 1212 (1724)
T ss_dssp HHHHHTTHHHHHHHHHH--HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHH
T ss_pred hhhhhhhcchHHHHHHH--hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHH
Confidence 22222 111111111 123667999999999999888766321
Q ss_pred CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEE----c------CCCCCHHHHHHHhhhccc
Q 007280 428 GFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN----F------DLPNDIDDYVHRIGRTGR 497 (609)
Q Consensus 428 ~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~----~------d~p~s~~~y~QriGRagR 497 (609)
...+..+|++|++.+|+.+++.|++|.++|||||+++++|||+|.+.+||. | ..|.++.+|+||+|||||
T Consensus 1213 ~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR 1292 (1724)
T 4f92_B 1213 LNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1292 (1724)
T ss_dssp HTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCC
T ss_pred hCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccC
Confidence 235778999999999999999999999999999999999999999999983 3 236689999999999999
Q ss_pred CCC--CceEEEEEcCCChhhHHHH
Q 007280 498 AGK--SGLATAFFNENNMSLARPL 519 (609)
Q Consensus 498 ~g~--~G~~~~f~~~~~~~~~~~l 519 (609)
.|. .|.|++|+.+.+..+.+.+
T Consensus 1293 ~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1293 PLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp TTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred CCCCCceEEEEEecchHHHHHHHH
Confidence 987 7999999988776555443
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=8.5e-40 Score=387.33 Aligned_cols=322 Identities=17% Similarity=0.184 Sum_probs=247.0
Q ss_pred CCHHHHHHH-HHCCCCCCCHHHHHHHhhHhC----CC--CceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccc
Q 007280 152 LGEALNLNI-RRCKYVKPTPVQRHAIPISIG----GR--DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (609)
Q Consensus 152 l~~~l~~~i-~~~~~~~pt~iQ~~~i~~i~~----~~--d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~ 224 (609)
++..+.+.+ ..++|. |||+|.++|+.+++ ++ |+|+|++||+|||++|+++++..+... +
T Consensus 588 ~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g-------------~ 653 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-------------K 653 (1151)
T ss_dssp CCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-------------C
T ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC-------------C
Confidence 444444444 345664 79999999998886 55 899999999999999998887655322 3
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHH---HHHHhc-CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQ---LRELER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+|||+||++|+.|++++++++....++++..+.+.....+. +..+.. .++|+|+||+.|. ..+.+.++++
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~l 728 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGL 728 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEE
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccce
Confidence 499999999999999999998877778888888877665443 333444 4999999997663 3456889999
Q ss_pred EEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEe
Q 007280 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH 380 (609)
Q Consensus 301 lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~ 380 (609)
|||||||++ ......++..+ ....++++||||+.+....+....+.+...+... ......+...+ .
T Consensus 729 vIiDEaH~~-----g~~~~~~l~~l----~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~--~~~r~~i~~~~---~ 794 (1151)
T 2eyq_A 729 LIVDEEHRF-----GVRHKERIKAM----RANVDILTLTATPIPRTLNMAMSGMRDLSIIATP--PARRLAVKTFV---R 794 (1151)
T ss_dssp EEEESGGGS-----CHHHHHHHHHH----HTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC--CCBCBCEEEEE---E
T ss_pred EEEechHhc-----ChHHHHHHHHh----cCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC--CCCccccEEEE---e
Confidence 999999993 44556666666 4457999999998776666655555444333211 11111222222 2
Q ss_pred ccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC--CCCcEEecCccCHHHHHHHHHhhhcCCCcEE
Q 007280 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKTPIL 458 (609)
Q Consensus 381 ~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~IL 458 (609)
...+ ..+.+.+..... ...+++|||++++.++.+++.|... ++.+..+||+|++.+|++++++|++|+++||
T Consensus 795 ~~~~-~~i~~~il~~l~-----~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VL 868 (1151)
T 2eyq_A 795 EYDS-MVVREAILREIL-----RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 868 (1151)
T ss_dssp ECCH-HHHHHHHHHHHT-----TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEE
T ss_pred cCCH-HHHHHHHHHHHh-----cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 2222 233333333322 2678999999999999999999887 7889999999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEcCC-CCCHHHHHHHhhhcccCCCCceEEEEEcCCC
Q 007280 459 VATDVAARGLDIPHVAHVVNFDL-PNDIDDYVHRIGRTGRAGKSGLATAFFNENN 512 (609)
Q Consensus 459 VaT~v~~~GlDip~v~~VI~~d~-p~s~~~y~QriGRagR~g~~G~~~~f~~~~~ 512 (609)
|||+++++|||||++++||+++. +.++.+|+||+||+||.|+.|.|++++.+.+
T Consensus 869 VaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 869 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp EESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred EECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999999999999999999998 5699999999999999999999999987643
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.2e-40 Score=401.40 Aligned_cols=344 Identities=17% Similarity=0.220 Sum_probs=251.4
Q ss_pred CCCCCCHHHHHHHhhHh-CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 164 KYVKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 164 ~~~~pt~iQ~~~i~~i~-~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
+|++++++|++++|.++ .++|+++|||||||||++|.+||+..+.+...... .....+.++|+|+|+++||.|+++.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~--~~~~~~~k~lyiaP~kALa~e~~~~ 153 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDG--TINVDDFKIIYIAPMRSLVQEMVGS 153 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTS--SCCTTSCEEEEECSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccc--cccCCCCEEEEECCHHHHHHHHHHH
Confidence 79999999999999877 57899999999999999999999999886532211 1122345699999999999999999
Q ss_pred HHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccc--ccccceEEEEeccchhhhhcCCHHHHHH
Q 007280 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEADRMLDMGFEPQIRK 320 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~--~~l~~i~~lVlDEah~~l~~gf~~~i~~ 320 (609)
+++.....+++|..++|+....++ ....++|+||||++|..++.+.. ..++.+++|||||+|.+.+ .+...++.
T Consensus 154 l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~ 229 (1724)
T 4f92_B 154 FGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEA 229 (1724)
T ss_dssp HHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHH
T ss_pred HHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHH
Confidence 998888889999999998765432 12468999999999866554432 2478899999999996655 56666666
Q ss_pred HHHHcCC---CCCCCceEEEEEeeccHHHHHHHHHhhcCc---EEEEecccCCcccceeEEEEEEeccch---HHHHHHH
Q 007280 321 IVQQMDM---PPPGMRQTMLFSATFPKEIQRLASDFLANY---IFLAVGRVGSSTDLIVQRVEFVHESDK---RSHLMDL 391 (609)
Q Consensus 321 i~~~l~~---~~~~~~q~il~SAT~~~~~~~l~~~~l~~~---~~~~~~~~~~~~~~i~q~~~~~~~~~k---~~~l~~~ 391 (609)
++..+.. ..+...|+|+||||+|+ .+++++.+-.++ .++ +.... ..-.+.+.+..+..... ...+.+.
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~-~~~~~-RPvpL~~~~~~~~~~~~~~~~~~~~~~ 306 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFY-FDNSF-RPVPLEQTYVGITEKKAIKRFQIMNEI 306 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEE-CCGGG-CSSCEEEECCEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEE-ECCCC-ccCccEEEEeccCCcchhhhhHHHHHH
Confidence 5543210 11456799999999975 455555332221 222 11111 11123343333332222 2223333
Q ss_pred HHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC-------------------------------------CCCcEEe
Q 007280 392 LHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-------------------------------------GFPATTI 434 (609)
Q Consensus 392 l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~-------------------------------------~~~~~~i 434 (609)
+........ ...++||||++++.|+.+++.|... ...+..+
T Consensus 307 ~~~~v~~~~--~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~H 384 (1724)
T 4f92_B 307 VYEKIMEHA--GKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIH 384 (1724)
T ss_dssp HHHHHTTCC--SSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEE
T ss_pred HHHHHHHHh--cCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEE
Confidence 333333322 3567999999999999988887531 2346789
Q ss_pred cCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEE----cCC------CCCHHHHHHHhhhcccCCC--Cc
Q 007280 435 HGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN----FDL------PNDIDDYVHRIGRTGRAGK--SG 502 (609)
Q Consensus 435 hg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~----~d~------p~s~~~y~QriGRagR~g~--~G 502 (609)
|++|++.+|..+++.|++|.++|||||+++++|||+|.+++||. ||. |-++.+|.||+|||||.|. .|
T Consensus 385 HagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G 464 (1724)
T 4f92_B 385 HAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKG 464 (1724)
T ss_dssp CSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCE
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCcc
Confidence 99999999999999999999999999999999999999999995 543 4689999999999999875 79
Q ss_pred eEEEEEcCCChhhHHH
Q 007280 503 LATAFFNENNMSLARP 518 (609)
Q Consensus 503 ~~~~f~~~~~~~~~~~ 518 (609)
.++++.+..+......
T Consensus 465 ~~ii~~~~~~~~~~~~ 480 (1724)
T 4f92_B 465 EGILITSHGELQYYLS 480 (1724)
T ss_dssp EEEEEEESTTCCHHHH
T ss_pred EEEEEecchhHHHHHH
Confidence 9999998776654443
No 43
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.1e-40 Score=367.07 Aligned_cols=313 Identities=16% Similarity=0.152 Sum_probs=234.3
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
.+|+|+|.++|+.++++++++++++||+|||++|+++++..+...+ ..+|||+||++|+.|+++++++
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE------------GKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS------------SEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC------------CeEEEEECcHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999998877664321 2499999999999999999999
Q ss_pred hhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHc
Q 007280 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (609)
Q Consensus 246 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l 325 (609)
+.....+++..++++....++ +...++|+|+||+.|... ....+.++++|||||||++.. ..+..++..+
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~ 249 (510)
T 2oca_A 180 YRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGL 249 (510)
T ss_dssp TTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGC
T ss_pred hhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhc
Confidence 876666788888888765544 345689999999976542 334578899999999999865 5566776666
Q ss_pred CCCCCCCceEEEEEeeccHHHHHHHH-HhhcCcEEEEecccC-----Ccccc-eeEEEEEEec-----------------
Q 007280 326 DMPPPGMRQTMLFSATFPKEIQRLAS-DFLANYIFLAVGRVG-----SSTDL-IVQRVEFVHE----------------- 381 (609)
Q Consensus 326 ~~~~~~~~q~il~SAT~~~~~~~l~~-~~l~~~~~~~~~~~~-----~~~~~-i~q~~~~~~~----------------- 381 (609)
....++++||||++.....+.. ..+..+..+...... ...+. +.........
T Consensus 250 ----~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (510)
T 2oca_A 250 ----NNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKI 325 (510)
T ss_dssp ----TTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHH
T ss_pred ----ccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHH
Confidence 4567899999999766433221 112222222221110 00010 1111111110
Q ss_pred ----cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcE
Q 007280 382 ----SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPI 457 (609)
Q Consensus 382 ----~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~I 457 (609)
..+...+.+++..... ....++|||++ .+.++.+++.|...+..+..+||++++.+|+++++.|++|+.+|
T Consensus 326 ~~~~~~~~~~l~~~l~~~~~----~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~v 400 (510)
T 2oca_A 326 ITGLSKRNKWIAKLAIKLAQ----KDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGII 400 (510)
T ss_dssp HHTCHHHHHHHHHHHHHHHT----TTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCE
T ss_pred HhccHHHHHHHHHHHHHHHh----cCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCE
Confidence 1122223344443322 22556677777 88899999999998889999999999999999999999999999
Q ss_pred EEEc-cccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEc
Q 007280 458 LVAT-DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN 509 (609)
Q Consensus 458 LVaT-~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~ 509 (609)
|||| +++++|||+|+|++||++++|+++..|+||+||+||.|+.+.++++++
T Consensus 401 Lv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 401 IVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999 999999999999999999999999999999999999998875555555
No 44
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3.1e-40 Score=329.77 Aligned_cols=250 Identities=54% Similarity=0.900 Sum_probs=210.4
Q ss_pred cccCCCCcccccCCCCCc--ccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHH
Q 007280 125 FDAYEDIPVETSGENVPP--AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFP 202 (609)
Q Consensus 125 ~~~~~~~~v~~~~~~~p~--~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llp 202 (609)
|++|+++++.+++...|. ++.+|++++|++.+.+++..++|.+|+|+|.++|+.+++++|+++++|||+|||++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~ 80 (253)
T 1wrb_A 1 FDKYDSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIP 80 (253)
T ss_dssp --CCCCCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CcchhhCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHH
Confidence 678899999999998887 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChH
Q 007280 203 IISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPG 282 (609)
Q Consensus 203 il~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg 282 (609)
++..+........ ......++++|||+||++|+.|++++++++....++++..++|+.....+...+..+++|+|+||+
T Consensus 81 ~l~~l~~~~~~~~-~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~ 159 (253)
T 1wrb_A 81 IINHLVCQDLNQQ-RYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPG 159 (253)
T ss_dssp HHHHHHTTCC-------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHH
T ss_pred HHHHHHhhccccc-cccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHH
Confidence 9998876432110 011223466999999999999999999999888889999999999988888888888999999999
Q ss_pred HHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEe
Q 007280 283 RLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAV 362 (609)
Q Consensus 283 ~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~ 362 (609)
+|.+++......+..+++|||||||+|++++|..++..++..+..+....+|+++||||+++++++++..++.+++.+.+
T Consensus 160 ~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 160 RLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp HHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 99999998888899999999999999999999999999999765443347899999999999999999999999999988
Q ss_pred cccCCcccceeEE
Q 007280 363 GRVGSSTDLIVQR 375 (609)
Q Consensus 363 ~~~~~~~~~i~q~ 375 (609)
.......+.+.|.
T Consensus 240 ~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 240 GRVGSTSDSIKQE 252 (253)
T ss_dssp C------------
T ss_pred CCCCCCcCCceec
Confidence 8776666666654
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.3e-42 Score=372.02 Aligned_cols=289 Identities=21% Similarity=0.206 Sum_probs=206.1
Q ss_pred hHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEE
Q 007280 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVA 257 (609)
Q Consensus 178 ~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~ 257 (609)
.+++++|+|+++|||||||++|++|+++.+.... +++|||+||++||.|+++.++.+ .+. .
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~------------~~~lil~Ptr~La~Q~~~~l~~~----~v~--~- 64 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR------------LRTLVLAPTRVVLSEMKEAFHGL----DVK--F- 64 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT------------CCEEEEESSHHHHHHHHHHTTTS----CEE--E-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC------------CeEEEEcchHHHHHHHHHHHhcC----CeE--E-
Confidence 4678999999999999999999999998876532 34999999999999999888754 222 1
Q ss_pred ECCcChHHHHHHHhcCCCE-EEeChHHHHHHHHcc--------cccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCC
Q 007280 258 YGGAPINQQLRELERGVDI-LVATPGRLVDLLERA--------RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMP 328 (609)
Q Consensus 258 ~gg~~~~~~~~~l~~~~~I-lV~Tpg~L~~~l~~~--------~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~ 328 (609)
..+ .+ .|+||+++++++... ...+.++++|||||||++ +..|...+..+...+.
T Consensus 65 ~~~--------------~~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~-- 127 (440)
T 1yks_A 65 HTQ--------------AFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR-- 127 (440)
T ss_dssp ESS--------------CCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH--
T ss_pred ecc--------------cceeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc--
Confidence 111 11 367776665433322 234789999999999998 4434333333333331
Q ss_pred CCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEE
Q 007280 329 PPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTL 408 (609)
Q Consensus 329 ~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~l 408 (609)
....|+++||||++..+..++.. ..++. .....+.... ...++..+... ..++|
T Consensus 128 -~~~~~~l~~SAT~~~~~~~~~~~--~~~~~--------------~~~~~~~~~~-~~~~~~~l~~~--------~~~~l 181 (440)
T 1yks_A 128 -ANESATILMTATPPGTSDEFPHS--NGEIE--------------DVQTDIPSEP-WNTGHDWILAD--------KRPTA 181 (440)
T ss_dssp -TTSCEEEEECSSCTTCCCSSCCC--SSCEE--------------EEECCCCSSC-CSSSCHHHHHC--------CSCEE
T ss_pred -cCCceEEEEeCCCCchhhhhhhc--CCCee--------------EeeeccChHH-HHHHHHHHHhc--------CCCEE
Confidence 34689999999998764432221 01111 0001111111 11222333221 56799
Q ss_pred EEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEE----------
Q 007280 409 VFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN---------- 478 (609)
Q Consensus 409 VF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~---------- 478 (609)
|||++++.++.+++.|...++.+..+|| .+|+++++.|++|+.+|||||+++++||||| +++||+
T Consensus 182 VF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~ 256 (440)
T 1yks_A 182 WFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLV 256 (440)
T ss_dssp EECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEE
T ss_pred EEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeec
Confidence 9999999999999999999999999999 4688999999999999999999999999999 999996
Q ss_pred ---------cCCCCCHHHHHHHhhhcccC-CCCceEEEEE---cCCChhhHHHHHHHHHHhcccchHH
Q 007280 479 ---------FDLPNDIDDYVHRIGRTGRA-GKSGLATAFF---NENNMSLARPLTELMQEANQEVPAW 533 (609)
Q Consensus 479 ---------~d~p~s~~~y~QriGRagR~-g~~G~~~~f~---~~~~~~~~~~l~~~l~~~~q~vp~~ 533 (609)
|+.|.+.++|+||+||+||. +++|.|++|+ ++.+...+..+.+.+.....++|..
T Consensus 257 ~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 324 (440)
T 1yks_A 257 DEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGG 324 (440)
T ss_dssp TTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGG
T ss_pred ccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccc
Confidence 89999999999999999998 6899999997 6788888899888887777776543
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.3e-40 Score=379.87 Aligned_cols=340 Identities=15% Similarity=0.177 Sum_probs=245.8
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHh-CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCc
Q 007280 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSR 220 (609)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~-~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~ 220 (609)
.++.+|+++++++.+.+.+...+ ..|+++|+++|+.++ .++++++++|||||||+ ++|++. +......
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll--~~~~~~~------ 137 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFV--LFDEMPH------ 137 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHH--HHHHCGG------
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHH--HHhcccc------
Confidence 45678999999999999998877 789999999998777 45779999999999999 566662 2221110
Q ss_pred cccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEE
Q 007280 221 TVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 221 ~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
..++.++|++|+++|+.|+++.+.+.. ++.+...+|.....+. .....++|+|+||++|++.+... ..+.++++
T Consensus 138 ~~g~~ilvl~P~r~La~q~~~~l~~~~---~~~v~~~vG~~i~~~~--~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~ 211 (773)
T 2xau_A 138 LENTQVACTQPRRVAAMSVAQRVAEEM---DVKLGEEVGYSIRFEN--KTSNKTILKYMTDGMLLREAMED-HDLSRYSC 211 (773)
T ss_dssp GGTCEEEEEESCHHHHHHHHHHHHHHT---TCCBTTTEEEEETTEE--ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEE
T ss_pred CCCceEEecCchHHHHHHHHHHHHHHh---CCchhheecceecccc--ccCCCCCEEEECHHHHHHHHhhC-ccccCCCE
Confidence 112459999999999999987665542 2222111221100000 01235799999999999887765 34899999
Q ss_pred EEeccchh-hhhcCCH-HHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEE
Q 007280 301 LALDEADR-MLDMGFE-PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEF 378 (609)
Q Consensus 301 lVlDEah~-~l~~gf~-~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~ 378 (609)
|||||+|. +++..+. ..+..+.... +..|+|+||||++. ..+.. ++.+...+.+.... ..+.+.+..
T Consensus 212 lIlDEah~R~ld~d~~~~~l~~l~~~~-----~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr~---~pv~~~~~~ 280 (773)
T 2xau_A 212 IILDEAHERTLATDILMGLLKQVVKRR-----PDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGRT---YPVELYYTP 280 (773)
T ss_dssp EEECSGGGCCHHHHHHHHHHHHHHHHC-----TTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCCC---CCEEEECCS
T ss_pred EEecCccccccchHHHHHHHHHHHHhC-----CCceEEEEeccccH--HHHHH-HhcCCCcccccCcc---cceEEEEec
Confidence 99999995 7764432 2333444332 35799999999964 34444 44443333332111 123333322
Q ss_pred EeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHh-----------CCCCcEEecCccCHHHHHHHH
Q 007280 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYM-----------NGFPATTIHGDRTQQERELAL 447 (609)
Q Consensus 379 ~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~-----------~~~~~~~ihg~~~~~~R~~~~ 447 (609)
....+....++..+...... ....++||||+++++++.+++.|.. .++.+..+||+|++.+|.+++
T Consensus 281 ~~~~~~~~~~l~~l~~~~~~---~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~ 357 (773)
T 2xau_A 281 EFQRDYLDSAIRTVLQIHAT---EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIF 357 (773)
T ss_dssp SCCSCHHHHHHHHHHHHHHH---SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGG
T ss_pred CCchhHHHHHHHHHHHHHHh---cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHH
Confidence 23333333444444333222 1367899999999999999999975 578899999999999999999
Q ss_pred Hhhh-----cCCCcEEEEccccccCCCCCCccEEEEcCC------------------CCCHHHHHHHhhhcccCCCCceE
Q 007280 448 RSFK-----SGKTPILVATDVAARGLDIPHVAHVVNFDL------------------PNDIDDYVHRIGRTGRAGKSGLA 504 (609)
Q Consensus 448 ~~F~-----~g~~~ILVaT~v~~~GlDip~v~~VI~~d~------------------p~s~~~y~QriGRagR~g~~G~~ 504 (609)
+.|+ +|..+|||||+++++|||||+|++||++++ |.+.++|+||+|||||. ++|.|
T Consensus 358 ~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~ 436 (773)
T 2xau_A 358 EPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKC 436 (773)
T ss_dssp SCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEE
T ss_pred hhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEE
Confidence 9999 999999999999999999999999999888 88999999999999999 89999
Q ss_pred EEEEcCCCh
Q 007280 505 TAFFNENNM 513 (609)
Q Consensus 505 ~~f~~~~~~ 513 (609)
+.|+++.+.
T Consensus 437 ~~l~~~~~~ 445 (773)
T 2xau_A 437 FRLYTEEAF 445 (773)
T ss_dssp EESSCHHHH
T ss_pred EEEecHHHh
Confidence 999986543
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=6.6e-41 Score=375.52 Aligned_cols=314 Identities=17% Similarity=0.198 Sum_probs=221.7
Q ss_pred HHHCCCC-----CCCHHHH-----HHHhhHh------CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 160 IRRCKYV-----KPTPVQR-----HAIPISI------GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 160 i~~~~~~-----~pt~iQ~-----~~i~~i~------~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
+..++|. .||++|+ ++||.++ +++|+|++++||||||++|++|++..+....
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~------------ 270 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKR------------ 270 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTT------------
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC------------
Confidence 3445666 8999999 9999888 8999999999999999999999998876532
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEe
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
+++|||+||++||.|+++.++.+ .+.. ..+... .....+.-+-+.+.+.+...+... ..++++++|||
T Consensus 271 ~~~lilaPTr~La~Q~~~~l~~~----~i~~--~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvVi 338 (673)
T 2wv9_A 271 LRTAVLAPTRVVAAEMAEALRGL----PVRY--LTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVM 338 (673)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTS----CCEE--CCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEE
T ss_pred CcEEEEccHHHHHHHHHHHHhcC----Ceee--eccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEE
Confidence 34999999999999999888765 2221 000000 000011234444555555444443 45889999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccc
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~ 383 (609)
||||++ +..+..++..+...+. +...|+|+||||++..+..+... ..++.. + ...+...
T Consensus 339 DEaH~~-~~~~~~~~~~l~~~~~---~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~-v-------------~~~~~~~- 397 (673)
T 2wv9_A 339 DEAHFT-DPASIAARGYIATRVE---AGEAAAIFMTATPPGTSDPFPDT--NSPVHD-V-------------SSEIPDR- 397 (673)
T ss_dssp ESTTCC-CHHHHHHHHHHHHHHH---TTSCEEEEECSSCTTCCCSSCCC--SSCEEE-E-------------ECCCCSS-
T ss_pred eCCccc-CccHHHHHHHHHHhcc---ccCCcEEEEcCCCChhhhhhccc--CCceEE-E-------------eeecCHH-
Confidence 999997 2222233333333331 24689999999998664322211 011110 0 0001111
Q ss_pred hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccc
Q 007280 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDV 463 (609)
Q Consensus 384 k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v 463 (609)
+...++..+.. ...++||||++++.++.+++.|...++.+..+||+ +|+++++.|++|+.+|||||++
T Consensus 398 ~~~~~l~~l~~--------~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv 465 (673)
T 2wv9_A 398 AWSSGFEWITD--------YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDI 465 (673)
T ss_dssp CCSSCCHHHHS--------CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGG
T ss_pred HHHHHHHHHHh--------CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECch
Confidence 11122222221 26679999999999999999999999999999993 8999999999999999999999
Q ss_pred cccCCCCCCccEEEE--------------------cCCCCCHHHHHHHhhhcccC-CCCceEEEEE---cCCChhhHHHH
Q 007280 464 AARGLDIPHVAHVVN--------------------FDLPNDIDDYVHRIGRTGRA-GKSGLATAFF---NENNMSLARPL 519 (609)
Q Consensus 464 ~~~GlDip~v~~VI~--------------------~d~p~s~~~y~QriGRagR~-g~~G~~~~f~---~~~~~~~~~~l 519 (609)
+++||||| +++||+ ||+|.++++|+||+||+||. +++|.|++|+ ++.+..++..+
T Consensus 466 ~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~i 544 (673)
T 2wv9_A 466 SEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWT 544 (673)
T ss_dssp GGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHH
T ss_pred hhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHH
Confidence 99999999 999998 67899999999999999999 7899999996 57777788887
Q ss_pred HHHHHHhcccch
Q 007280 520 TELMQEANQEVP 531 (609)
Q Consensus 520 ~~~l~~~~q~vp 531 (609)
...+.....+++
T Consensus 545 e~~~~l~~~~~~ 556 (673)
T 2wv9_A 545 EAKILLDNIHLP 556 (673)
T ss_dssp HHHHHHHTSCBT
T ss_pred HHHHhhhhccCC
Confidence 776655444443
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=7.3e-41 Score=369.77 Aligned_cols=279 Identities=20% Similarity=0.200 Sum_probs=211.5
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.+.++|+++++.+.++++++++|+||||||++|++|+++. . .++||++|||+||.|+++.+.+.
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g------------~~vLVl~PTReLA~Qia~~l~~~ 280 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----G------------YKVLVLNPSVAATLGFGAYMSKA 280 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----T------------CCEEEEESCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----C------------CeEEEEcchHHHHHHHHHHHHHH
Confidence 4556666666777788999999999999999999988751 1 23999999999999998877665
Q ss_pred hccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcC
Q 007280 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 326 (609)
Q Consensus 247 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~ 326 (609)
. +.++...+|+.. +..+++|+|+||++| +.+..+.++++++||||||| +++++|...+..|++.+
T Consensus 281 ~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l- 345 (666)
T 3o8b_A 281 H---GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQA- 345 (666)
T ss_dssp H---SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHT-
T ss_pred h---CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhh-
Confidence 3 445566677654 345789999999998 45566778889999999996 67788888999999888
Q ss_pred CCCCCCce--EEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCC
Q 007280 327 MPPPGMRQ--TMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQ 404 (609)
Q Consensus 327 ~~~~~~~q--~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ 404 (609)
+..+| +++||||++..+. ...+....+... .... +.+...... + . ....
T Consensus 346 ---~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~--~~~~----i~~~~~~~~-------l----~---~~~~ 396 (666)
T 3o8b_A 346 ---ETAGARLVVLATATPPGSVT------VPHPNIEEVALS--NTGE----IPFYGKAIP-------I----E---AIRG 396 (666)
T ss_dssp ---TTTTCSEEEEEESSCTTCCC------CCCTTEEEEECB--SCSS----EEETTEEEC-------G----G---GSSS
T ss_pred ---hhcCCceEEEECCCCCcccc------cCCcceEEEeec--ccch----hHHHHhhhh-------h----h---hccC
Confidence 33344 7888999987321 011111110000 0000 001000000 0 0 1137
Q ss_pred ceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEE-------
Q 007280 405 ALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVV------- 477 (609)
Q Consensus 405 ~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI------- 477 (609)
.++||||++++.++.+++.|...++.+..+||+|++.+ |+++..+|||||+++++||||| |++||
T Consensus 397 ~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~ 468 (666)
T 3o8b_A 397 GRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVT 468 (666)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccc
Confidence 78999999999999999999999999999999999875 5567779999999999999997 99988
Q ss_pred ---EcC-----------CCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhh
Q 007280 478 ---NFD-----------LPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSL 515 (609)
Q Consensus 478 ---~~d-----------~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~ 515 (609)
||| +|.+.++|+||+||||| +++|. ++|+++.+...
T Consensus 469 ~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 469 QTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 788 89999999999999999 89999 99999877655
No 49
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=7.6e-39 Score=317.51 Aligned_cols=225 Identities=45% Similarity=0.765 Sum_probs=205.2
Q ss_pred cccccCCCCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhh
Q 007280 132 PVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQ 211 (609)
Q Consensus 132 ~v~~~~~~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~ 211 (609)
.+.+.+.+.|.++.+|++++|++.+.+.+..++|.+|+|+|.++|+.+++++|++++||||||||++|++|++..+....
T Consensus 16 ~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~ 95 (242)
T 3fe2_A 16 EITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP 95 (242)
T ss_dssp TEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSC
T ss_pred ceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcc
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred cccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc
Q 007280 212 YVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 291 (609)
Q Consensus 212 ~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~ 291 (609)
... ...++++|||+||++|+.|+++.++++....++++..++|+.....+...+..+++|+|+||++|.+++...
T Consensus 96 ~~~-----~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~ 170 (242)
T 3fe2_A 96 FLE-----RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG 170 (242)
T ss_dssp CCC-----TTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT
T ss_pred ccc-----cCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 211 123466999999999999999999999988899999999999999999989899999999999999999988
Q ss_pred cccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEeccc
Q 007280 292 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRV 365 (609)
Q Consensus 292 ~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~ 365 (609)
...+.++++|||||||+|++++|...+..++..+ +..+|+++||||++++++.+++.++.+++.+.++..
T Consensus 171 ~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~----~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 171 KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI----RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp SCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTS----CSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred CCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhC----CccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 8889999999999999999999999999999887 567899999999999999999999999999887643
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.1e-39 Score=353.23 Aligned_cols=281 Identities=17% Similarity=0.165 Sum_probs=202.0
Q ss_pred HhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEE
Q 007280 176 IPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVV 255 (609)
Q Consensus 176 i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~ 255 (609)
...+.+++++|+++|||||||++|++|++..++... +.+||++|||+||.|+++.++.+ .+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~------------~~~lvl~Ptr~La~Q~~~~l~g~------~v~ 76 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR------------LRTAVLAPTRVVAAEMAEALRGL------PVR 76 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTT------------CCEEEEECSHHHHHHHHHHTTTS------CEE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC------------CcEEEECchHHHHHHHHHHhcCc------eEe
Confidence 455667899999999999999999999998886532 34999999999999998887632 222
Q ss_pred EEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchh-----hhhcCCHHHHHHHHHHcCCCCC
Q 007280 256 VAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-----MLDMGFEPQIRKIVQQMDMPPP 330 (609)
Q Consensus 256 ~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~-----~l~~gf~~~i~~i~~~l~~~~~ 330 (609)
........ .-..+..|.++|.+.|...+... ..++++++|||||||+ ++.++|...+. . .
T Consensus 77 ~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~----~-----~ 141 (459)
T 2z83_A 77 YQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV----E-----L 141 (459)
T ss_dssp ECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH----H-----T
T ss_pred EEeccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh----c-----c
Confidence 11111110 01223467889999888776654 4588999999999998 55554433221 1 2
Q ss_pred CCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEE
Q 007280 331 GMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVF 410 (609)
Q Consensus 331 ~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF 410 (609)
...|+|+||||++.++..+... ..++..... .++ ..+...+++++... ..++|||
T Consensus 142 ~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~--------------~~~-~~~~~~~~~~l~~~--------~~~~LVF 196 (459)
T 2z83_A 142 GEAAAIFMTATPPGTTDPFPDS--NAPIHDLQD--------------EIP-DRAWSSGYEWITEY--------AGKTVWF 196 (459)
T ss_dssp TSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC--------------CCC-SSCCSSCCHHHHHC--------CSCEEEE
T ss_pred CCccEEEEEcCCCcchhhhccC--CCCeEEecc--------------cCC-cchhHHHHHHHHhc--------CCCEEEE
Confidence 4689999999998764322211 122221110 001 11111222333321 5679999
Q ss_pred ecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEE------------
Q 007280 411 VETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVN------------ 478 (609)
Q Consensus 411 ~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~------------ 478 (609)
|++++.++.+++.|...++.+..+|++ +|+++++.|++|+.+|||||+++++|||||+ ++||+
T Consensus 197 ~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~ 271 (459)
T 2z83_A 197 VASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEE 271 (459)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECS
T ss_pred eCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccc
Confidence 999999999999999999999999995 7888999999999999999999999999999 99999
Q ss_pred --------cCCCCCHHHHHHHhhhcccCCC-CceEEEEEcCC--ChhhHHHH
Q 007280 479 --------FDLPNDIDDYVHRIGRTGRAGK-SGLATAFFNEN--NMSLARPL 519 (609)
Q Consensus 479 --------~d~p~s~~~y~QriGRagR~g~-~G~~~~f~~~~--~~~~~~~l 519 (609)
||.|.+.++|+||+|||||.|+ +|.|++|++.. +...+..+
T Consensus 272 ~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~~~~~~~~~~~ 323 (459)
T 2z83_A 272 GEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGATSEDDSNLAHW 323 (459)
T ss_dssp SSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHH
T ss_pred cccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcccccchhhhhhh
Confidence 7899999999999999999997 99999999875 44444443
No 51
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1e-39 Score=355.79 Aligned_cols=293 Identities=20% Similarity=0.220 Sum_probs=216.2
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
.+|+|+|.++++.++++++++++++||+|||++|++++... . ..+|||+||++|+.||++++++
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~-------------~~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---S-------------TPTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---C-------------SCEEEEESSHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---C-------------CCEEEEECCHHHHHHHHHHHHh
Confidence 37999999999999999999999999999999999887643 1 1299999999999999999988
Q ss_pred hhccCCeE-EEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHH
Q 007280 246 FSYQTGVK-VVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (609)
Q Consensus 246 ~~~~~~i~-~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~ 324 (609)
| +++ +.+++|+... .++|+|+||+.|...++.. ...+++|||||||++.+..|.. ++..
T Consensus 156 ~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~ 215 (472)
T 2fwr_A 156 F----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQM 215 (472)
T ss_dssp G----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHT
T ss_pred C----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHh
Confidence 5 677 7777776642 4799999999998766531 2458999999999999887754 4444
Q ss_pred cCCCCCCCceEEEEEeeccH-------------------HHHHHHHHhhcCcEEEEeccc--CC----------------
Q 007280 325 MDMPPPGMRQTMLFSATFPK-------------------EIQRLASDFLANYIFLAVGRV--GS---------------- 367 (609)
Q Consensus 325 l~~~~~~~~q~il~SAT~~~-------------------~~~~l~~~~l~~~~~~~~~~~--~~---------------- 367 (609)
+ ...++|+||||+.. ...++...++.++....+... ..
T Consensus 216 ~-----~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 290 (472)
T 2fwr_A 216 S-----IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFL 290 (472)
T ss_dssp C-----CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCS
T ss_pred c-----CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 4 24679999999862 122222222222221111000 00
Q ss_pred --------cccceeEEE---------------------EEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHH
Q 007280 368 --------STDLIVQRV---------------------EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGAD 418 (609)
Q Consensus 368 --------~~~~i~q~~---------------------~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~ 418 (609)
....+.+.+ ..+....|...|.+++... ...++||||++++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-------~~~k~lvF~~~~~~~~ 363 (472)
T 2fwr_A 291 RARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH-------RKDKIIIFTRHNELVY 363 (472)
T ss_dssp SSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT-------SSSCBCCBCSCHHHHH
T ss_pred HhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC-------CCCcEEEEECCHHHHH
Confidence 000000000 0011223344455555441 3678999999999999
Q ss_pred HHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccC
Q 007280 419 ALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 498 (609)
Q Consensus 419 ~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~ 498 (609)
.+++.|. +..+||++++.+|+++++.|++|+.+|||||+++++|+|+|++++||++|+|+++..|+||+||++|.
T Consensus 364 ~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~ 438 (472)
T 2fwr_A 364 RISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRP 438 (472)
T ss_dssp HHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCC
T ss_pred HHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCC
Confidence 9999873 56799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-ceEE--EEEcCC
Q 007280 499 GKS-GLAT--AFFNEN 511 (609)
Q Consensus 499 g~~-G~~~--~f~~~~ 511 (609)
|+. +.++ .|+++.
T Consensus 439 g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 439 SKGKKEAVLYELISRG 454 (472)
T ss_dssp CTTTCCEEEEEEEECS
T ss_pred CCCCceEEEEEEEeCC
Confidence 854 4444 445543
No 52
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=302.13 Aligned_cols=217 Identities=40% Similarity=0.628 Sum_probs=186.3
Q ss_pred CCCCCcccCcccc-CCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccC
Q 007280 137 GENVPPAVNTFAE-IDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR 215 (609)
Q Consensus 137 ~~~~p~~~~~f~~-~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~ 215 (609)
....|+|..+|++ +++++.+.+.+..++|.+|+|+|+++|+.+++++|+++++|||||||++|++|++..+.......
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~- 89 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR- 89 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh-
Confidence 4557889999999 79999999999999999999999999999999999999999999999999999998876432211
Q ss_pred CCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccc
Q 007280 216 PRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSL 295 (609)
Q Consensus 216 ~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l 295 (609)
....++++|||+||++|+.|++++++++. ..++++..++|+.....+...+.++++|+|+||++|.+++......+
T Consensus 90 ---~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~ 165 (228)
T 3iuy_A 90 ---EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNL 165 (228)
T ss_dssp ------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCC
T ss_pred ---hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCc
Confidence 11234569999999999999999999986 45788999999998888888888899999999999999998888889
Q ss_pred cceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEe
Q 007280 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAV 362 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~ 362 (609)
.++++|||||||++++++|...+..++..+ +..+|+++||||+++++++++..++.+++.+.+
T Consensus 166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 166 RSITYLVIDEADKMLDMEFEPQIRKILLDV----RPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp TTCCEEEECCHHHHHHTTCHHHHHHHHHHS----CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred ccceEEEEECHHHHhccchHHHHHHHHHhC----CcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 999999999999999999999999999988 567899999999999999999999999887753
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3.3e-37 Score=331.10 Aligned_cols=270 Identities=17% Similarity=0.149 Sum_probs=192.8
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECC
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg 260 (609)
+++++|+++|||||||++|++|+++.+...+ +++|||+||++||.|+++.++ ++.+....+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g------------~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~ 62 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKR------------LRTVILAPTRVVASEMYEALR------GEPIRYMTPA 62 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTT------------CCEEEEESSHHHHHHHHHHTT------TSCEEEC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCC------------CCEEEECcHHHHHHHHHHHhC------CCeEEEEecC
Confidence 3689999999999999999999997776532 249999999999999987765 3344443333
Q ss_pred cChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 007280 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (609)
Q Consensus 261 ~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SA 340 (609)
... .-..+..+.++|.+.+...+.. ...+.++++|||||||++ +..+..+...+..... +...|+|+|||
T Consensus 63 ~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~---~~~~~~l~~SA 132 (431)
T 2v6i_A 63 VQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS---MGDAGAIFMTA 132 (431)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH---TTSCEEEEEES
T ss_pred ccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh---CCCCcEEEEeC
Confidence 211 1112456778899988776665 455889999999999996 4444444444444431 34689999999
Q ss_pred eccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHH
Q 007280 341 TFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADAL 420 (609)
Q Consensus 341 T~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l 420 (609)
|+++.+..+... ..++. .+ ...+ ...+...+++.+.. ...++||||++++.++.+
T Consensus 133 T~~~~~~~~~~~--~~~i~-~~-------------~~~~-~~~~~~~~~~~l~~--------~~~~~lVF~~~~~~~~~l 187 (431)
T 2v6i_A 133 TPPGTTEAFPPS--NSPII-DE-------------ETRI-PDKAWNSGYEWITE--------FDGRTVWFVHSIKQGAEI 187 (431)
T ss_dssp SCTTCCCSSCCC--SSCCE-EE-------------ECCC-CSSCCSSCCHHHHS--------CSSCEEEECSSHHHHHHH
T ss_pred CCCcchhhhcCC--CCcee-ec-------------cccC-CHHHHHHHHHHHHc--------CCCCEEEEeCCHHHHHHH
Confidence 998743221110 01111 00 0001 11122223333322 145799999999999999
Q ss_pred HHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccE-----------------EEEcCCCC
Q 007280 421 EHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAH-----------------VVNFDLPN 483 (609)
Q Consensus 421 ~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~-----------------VI~~d~p~ 483 (609)
++.|...++.+..+||+ +|+++++.|++|+.+|||||+++++|||+| +.+ ||+++.|.
T Consensus 188 ~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~ 262 (431)
T 2v6i_A 188 GTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAI 262 (431)
T ss_dssp HHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEEC
T ss_pred HHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccC
Confidence 99999999999999996 688899999999999999999999999999 655 67889999
Q ss_pred CHHHHHHHhhhcccCCC-CceEEEEE
Q 007280 484 DIDDYVHRIGRTGRAGK-SGLATAFF 508 (609)
Q Consensus 484 s~~~y~QriGRagR~g~-~G~~~~f~ 508 (609)
+.++|+||+||+||.|+ .+.+++|.
T Consensus 263 ~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 263 TPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 99999999999999985 45555554
No 54
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.6e-36 Score=299.40 Aligned_cols=207 Identities=39% Similarity=0.625 Sum_probs=189.4
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcc
Q 007280 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (609)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~ 221 (609)
.+..+|++++|++.+.+.+..++|.+|+++|+++|+.++++++++++++||||||++|++|++..+.....
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~--------- 110 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQ--------- 110 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC---------
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC---------
Confidence 45678999999999999999999999999999999999999999999999999999999999998876432
Q ss_pred ccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHc-ccccccceEE
Q 007280 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQMIRY 300 (609)
Q Consensus 222 ~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~-~~~~l~~i~~ 300 (609)
.+++|||+||++|+.|++++++++....++++.+++|+.....+...+..+++|+|+||++|.+++.. ..+.+..+++
T Consensus 111 -~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~ 189 (249)
T 3ber_A 111 -RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKY 189 (249)
T ss_dssp -SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCE
T ss_pred -CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCE
Confidence 24599999999999999999999988888999999999998888888888999999999999999886 4457889999
Q ss_pred EEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEe
Q 007280 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAV 362 (609)
Q Consensus 301 lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~ 362 (609)
|||||||++++++|...+..++..+ +..+|+++||||++.+++++++.++.+++.+.+
T Consensus 190 lViDEah~l~~~~~~~~l~~i~~~~----~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 190 LVMDEADRILNMDFETEVDKILKVI----PRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHSS----CSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EEEcChhhhhccChHHHHHHHHHhC----CCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999887 567899999999999999999999999988765
No 55
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=6.4e-37 Score=342.77 Aligned_cols=309 Identities=18% Similarity=0.184 Sum_probs=188.8
Q ss_pred CCCHHHHHHHhhHhC-----CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHH-
Q 007280 167 KPTPVQRHAIPISIG-----GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH- 240 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~-----~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~- 240 (609)
.|+|+|.++|+.+++ .++++++++||+|||++++ +++..++....... .....+++|||+||++|+.|+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~-~~~~~l~~~~~~~~---~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAF-QISWKLWSARWNRT---GDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHHHHTTCCSS---CSSSCCCEEEEEC----------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHH-HHHHHHHhcccccc---cccCCCeEEEEeCCHHHHHHHHH
Confidence 699999999998875 4668999999999999855 45555655431110 0112345999999999999998
Q ss_pred HHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHc----ccccccceEEEEeccchhhhhcCCHH
Q 007280 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER----ARVSLQMIRYLALDEADRMLDMGFEP 316 (609)
Q Consensus 241 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~----~~~~l~~i~~lVlDEah~~l~~gf~~ 316 (609)
+.++.|.. .+..+.++ ......+|+|+||++|...+.. ..+....+++||+||||++.... ..
T Consensus 254 ~~~~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~ 320 (590)
T 3h1t_A 254 KTFTPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NS 320 (590)
T ss_dssp -CCTTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHHHhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hH
Confidence 77776632 23333322 1234689999999999887652 23456678999999999987643 35
Q ss_pred HHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCc------------------EEEEecccCCcc---------
Q 007280 317 QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANY------------------IFLAVGRVGSST--------- 369 (609)
Q Consensus 317 ~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~------------------~~~~~~~~~~~~--------- 369 (609)
.+..++..+. ..++|+||||+..........++..+ ....+.......
T Consensus 321 ~~~~il~~~~-----~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 395 (590)
T 3h1t_A 321 NWREILEYFE-----PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDV 395 (590)
T ss_dssp -CHHHHHHST-----TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------
T ss_pred HHHHHHHhCC-----cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccc
Confidence 6677777762 35799999997643222222222222 211111100000
Q ss_pred ----cceeEEEEEEec-------cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCC--------C
Q 007280 370 ----DLIVQRVEFVHE-------SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGF--------P 430 (609)
Q Consensus 370 ----~~i~q~~~~~~~-------~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~--------~ 430 (609)
..+......... ..+...+.+.|....... ....++||||+++++|+.+++.|...+. .
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~--~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 473 (590)
T 3h1t_A 396 DRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT--DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDY 473 (590)
T ss_dssp -------------CCSHHHHHHHHHTHHHHHHHHHHHHHHH--CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTS
T ss_pred cccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc--CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCe
Confidence 000000000000 112223333343333221 2357899999999999999999976533 2
Q ss_pred cEEecCccCHHHHHHHHHhhhcCCCc---EEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCC
Q 007280 431 ATTIHGDRTQQERELALRSFKSGKTP---ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK 500 (609)
Q Consensus 431 ~~~ihg~~~~~~R~~~~~~F~~g~~~---ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~ 500 (609)
+..+||++++ +|++++++|++++.+ |||||+++++|||+|+|++||++++|+++..|+||+||++|.+.
T Consensus 474 ~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 474 VARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 6789998764 799999999998766 88999999999999999999999999999999999999999875
No 56
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.8e-36 Score=299.37 Aligned_cols=212 Identities=35% Similarity=0.526 Sum_probs=177.5
Q ss_pred CCCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCC
Q 007280 138 ENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPR 217 (609)
Q Consensus 138 ~~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~ 217 (609)
.+.|.++.+|++++|++.+.+.+..++|..|+|+|+++|+.+++++|+++++|||+|||++|++|++..+....
T Consensus 23 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~------ 96 (237)
T 3bor_A 23 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF------ 96 (237)
T ss_dssp ----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS------
T ss_pred CCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC------
Confidence 34556778899999999999999999999999999999999999999999999999999999999998764321
Q ss_pred CCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcC-CCEEEeChHHHHHHHHccccccc
Q 007280 218 GSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERG-VDILVATPGRLVDLLERARVSLQ 296 (609)
Q Consensus 218 ~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~-~~IlV~Tpg~L~~~l~~~~~~l~ 296 (609)
..+++|||+||++|+.|++++++++....++.+..++|+.....+...+..+ ++|+|+||++|.+++.+....+.
T Consensus 97 ----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 172 (237)
T 3bor_A 97 ----KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPK 172 (237)
T ss_dssp ----CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCST
T ss_pred ----CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcc
Confidence 1245999999999999999999999888889999999998887777777665 89999999999999988777889
Q ss_pred ceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEec
Q 007280 297 MIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (609)
Q Consensus 297 ~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~ 363 (609)
.+++|||||||+|++++|...+..++..+ +...|+++||||+++++.++++.++.+++.+.+.
T Consensus 173 ~~~~lViDEah~~~~~~~~~~l~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 173 WIKMFVLDEADEMLSRGFKDQIYEIFQKL----NTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp TCCEEEEESHHHHHHTTCHHHHHHHHHHS----CTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred cCcEEEECCchHhhccCcHHHHHHHHHhC----CCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999988 5678999999999999999999999999887553
No 57
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=4.5e-36 Score=295.16 Aligned_cols=212 Identities=31% Similarity=0.535 Sum_probs=182.6
Q ss_pred cCCCCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccC
Q 007280 136 SGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR 215 (609)
Q Consensus 136 ~~~~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~ 215 (609)
+++..|.+..+|++++|++.+.+.+..++|.+|+|+|+++|+.+++++|++++++||+|||++|++|++..+.....
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~--- 91 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENL--- 91 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSC---
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCC---
Confidence 45566778889999999999999999999999999999999999999999999999999999999999987754321
Q ss_pred CCCCccccceEEEEcCcHHHHHHHHHHHHHhhccC-CeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccccc
Q 007280 216 PRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS 294 (609)
Q Consensus 216 ~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~ 294 (609)
.+++|||+||++|+.|++++++++.... ++++.+++|+.....+...+ .+++|+|+||++|.+++....+.
T Consensus 92 -------~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~ 163 (230)
T 2oxc_A 92 -------STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLN 163 (230)
T ss_dssp -------SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSC
T ss_pred -------CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcc
Confidence 2459999999999999999999997654 78999999998877666555 46899999999999999888778
Q ss_pred ccceEEEEeccchhhhhcC-CHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEe
Q 007280 295 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAV 362 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~g-f~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~ 362 (609)
+.++++||+||||++++++ |...+..++..+ +...|+++||||+++++.+++..++.+++.+.+
T Consensus 164 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~----~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 164 PGSIRLFILDEADKLLEEGSFQEQINWIYSSL----PASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp GGGCCEEEESSHHHHHSTTSSHHHHHHHHHHS----CSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred cccCCEEEeCCchHhhcCcchHHHHHHHHHhC----CCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 8999999999999999998 999999999988 567899999999999999999999998887654
No 58
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=307.98 Aligned_cols=204 Identities=27% Similarity=0.456 Sum_probs=179.7
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCC--CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCc
Q 007280 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSR 220 (609)
Q Consensus 143 ~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~--~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~ 220 (609)
++.+|++++|++.+.++|..++|.+|||+|.++||.++.+ +|+|++||||||||++|++|+++.+....
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~--------- 160 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------- 160 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS---------
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC---------
Confidence 5688999999999999999999999999999999999987 99999999999999999999998875432
Q ss_pred cccceEEEEcCcHHHHHHHHHHHHHhhccC-CeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHc-ccccccce
Q 007280 221 TVYPLALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQMI 298 (609)
Q Consensus 221 ~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~-~~~~l~~i 298 (609)
..|++|||+|||+||.|+++.++++.... ++.+.+++++....... ...++|+|+||++|++++.+ ..+.++++
T Consensus 161 -~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 161 -KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred -CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 23569999999999999999999997653 68888888887643322 35689999999999999976 45678999
Q ss_pred EEEEeccchhhhh-cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEec
Q 007280 299 RYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (609)
Q Consensus 299 ~~lVlDEah~~l~-~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~ 363 (609)
++|||||||+|++ .+|...+..|+..+ +..+|+++||||+++++..++..++.+++.+.+.
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~----~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTS----CTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhC----CCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 9999999999998 78999999998877 5678999999999999999999999999988764
No 59
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.5e-35 Score=284.54 Aligned_cols=202 Identities=31% Similarity=0.588 Sum_probs=183.9
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccc
Q 007280 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (609)
Q Consensus 145 ~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~ 224 (609)
.+|++++|++.+.+.+..++|.+|+|+|+++++.+++++++++++|||+|||++|++|++..+.... ..+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~----------~~~ 72 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK----------DNI 72 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS----------CSC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC----------CCe
Confidence 4699999999999999999999999999999999999999999999999999999999998764322 124
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccC-CeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEe
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
++||++||++|+.|++++++++.... ++++..++|+....++...+..+++|+|+||++|.+++.+....+..+++||+
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 59999999999999999999998766 78899999999988888888888999999999999999888778899999999
Q ss_pred ccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEE
Q 007280 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFL 360 (609)
Q Consensus 304 DEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~ 360 (609)
||||++++.+|...+..++..+ +...|+++||||++.++.++++.++.+++.+
T Consensus 153 DEah~~~~~~~~~~l~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 153 DEADKLLSQDFVQIMEDIILTL----PKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHS----CTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EChHHhHhhCcHHHHHHHHHhC----CccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999999988 5678999999999999999999999988754
No 60
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=5.1e-36 Score=292.50 Aligned_cols=206 Identities=32% Similarity=0.507 Sum_probs=183.9
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcccc
Q 007280 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (609)
Q Consensus 144 ~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~ 223 (609)
..+|++++|++.+.+.+..++|.+|+|+|+++|+.+++++++++++|||+|||++|++|++..+.... ..
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----------~~ 72 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER----------AE 72 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS----------CS
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc----------CC
Confidence 46799999999999999999999999999999999999999999999999999999999998765432 12
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccC----CeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceE
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQT----GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIR 299 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~----~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~ 299 (609)
+++|||+||++|+.|++++++++.... ++++..++|+.....+...+..+++|+|+||++|.+++......+..++
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 152 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAH 152 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCC
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcce
Confidence 459999999999999999999998765 6888889999876666555566789999999999999988777889999
Q ss_pred EEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEec
Q 007280 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (609)
Q Consensus 300 ~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~ 363 (609)
+||+||||++++++|...+..++..+ +...|+++||||+++++.++++.++.++..+.+.
T Consensus 153 ~lViDEah~~~~~~~~~~l~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 153 ILVVDEADLMLDMGFITDVDQIAARM----PKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp EEEECSHHHHHHTTCHHHHHHHHHTS----CTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred EEEEcCchHHhhhChHHHHHHHHHhC----CcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999988 5678999999999999999999999999877654
No 61
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.4e-35 Score=289.19 Aligned_cols=211 Identities=32% Similarity=0.525 Sum_probs=185.6
Q ss_pred cccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCcc
Q 007280 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (609)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~ 221 (609)
.++.+|+++++++.+.+.+..++|..|+|+|+++|+.+++++++++++|||+|||++|++|++..+...... ..
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~------~~ 95 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT------ST 95 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC------GG
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc------cc
Confidence 456789999999999999999999999999999999999999999999999999999999999988764321 12
Q ss_pred ccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc-cccccceEE
Q 007280 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRY 300 (609)
Q Consensus 222 ~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~-~~~l~~i~~ 300 (609)
.++++||++||++|+.|++++++++....++++.+++|+.....+...+ .+++|+|+||++|.+++... ...+.++++
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 174 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQM 174 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccE
Confidence 2356999999999999999999999888889999999998877666655 47899999999999988765 456889999
Q ss_pred EEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEec
Q 007280 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (609)
Q Consensus 301 lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~ 363 (609)
||+||||++++++|...+..++..+ +..+|+++||||+++++.++++.++.++..+.+.
T Consensus 175 lViDEah~~~~~~~~~~~~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 175 LVLDEADRILDMGFADTMNAVIENL----PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp EEETTHHHHHHTTTHHHHHHHHHTS----CTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred EEEeChHHHhcCCcHHHHHHHHHhC----CCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999999999999999988 5678999999999999999999999999887654
No 62
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.2e-35 Score=288.78 Aligned_cols=211 Identities=34% Similarity=0.541 Sum_probs=180.1
Q ss_pred CCCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCC
Q 007280 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218 (609)
Q Consensus 139 ~~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~ 218 (609)
..++++.+|++++|++.+.+.+..++|..|+|+|+++|+.+++++++++++|||+|||++|++|+++.+....
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~------- 80 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV------- 80 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC-------
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC-------
Confidence 3456678899999999999999999999999999999999999999999999999999999999998774432
Q ss_pred CccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccce
Q 007280 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMI 298 (609)
Q Consensus 219 ~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i 298 (609)
..+++||++||++|+.|++++++++....++++..++|+.....+...+.. ++|+|+||++|.+++.+....+.++
T Consensus 81 ---~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 81 ---KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp ---CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred ---CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhC
Confidence 124599999999999999999999988888999999999887766665554 8999999999999998887888999
Q ss_pred EEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEecc
Q 007280 299 RYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR 364 (609)
Q Consensus 299 ~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~ 364 (609)
++||+||||++++++|...+..++..+ +...|+++||||+++++.++++.++.+++.+.+..
T Consensus 157 ~~iViDEah~~~~~~~~~~l~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 157 KMFILDEADEMLSSGFKEQIYQIFTLL----PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHS----CTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred cEEEEcChhHHhhhhhHHHHHHHHHhC----CccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999999999999999999999987 56789999999999999999999999998876543
No 63
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.1e-35 Score=332.25 Aligned_cols=281 Identities=15% Similarity=0.150 Sum_probs=207.0
Q ss_pred HHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCC
Q 007280 172 QRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTG 251 (609)
Q Consensus 172 Q~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~ 251 (609)
|.+.....+++++++++||||||||+ +++..+...+ ..||++|||+||.|+++.++++ +
T Consensus 145 ~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~-------------~gl~l~PtR~LA~Qi~~~l~~~----g 203 (677)
T 3rc3_A 145 NWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK-------------SGVYCGPLKLLAHEIFEKSNAA----G 203 (677)
T ss_dssp GGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHSS-------------SEEEEESSHHHHHHHHHHHHHT----T
T ss_pred hhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC-------------CeEEEeCHHHHHHHHHHHHHhc----C
Confidence 33334455788999999999999998 3445554432 1699999999999999998885 6
Q ss_pred eEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCC
Q 007280 252 VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPG 331 (609)
Q Consensus 252 i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~ 331 (609)
+++..++|+..... ....+..+++++|++.+. ....+++|||||||+|++.+|...+..++..+. ..
T Consensus 204 ~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~---~~ 270 (677)
T 3rc3_A 204 VPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC---AE 270 (677)
T ss_dssp CCEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC---EE
T ss_pred CcEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccC---cc
Confidence 78888888865300 000112567777765432 256789999999999999999999999998883 25
Q ss_pred CceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEe
Q 007280 332 MRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFV 411 (609)
Q Consensus 332 ~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~ 411 (609)
..+++++|||. +.++.++... ...+.+... .... . ...... .. ..+... ....||||
T Consensus 271 ~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~--~r~~---~--l~~~~~--~l----~~l~~~--------~~g~iIf~ 327 (677)
T 3rc3_A 271 EVHLCGEPAAI-DLVMELMYTT-GEEVEVRDY--KRLT---P--ISVLDH--AL----ESLDNL--------RPGDCIVC 327 (677)
T ss_dssp EEEEEECGGGH-HHHHHHHHHH-TCCEEEEEC--CCSS---C--EEECSS--CC----CSGGGC--------CTTEEEEC
T ss_pred ceEEEeccchH-HHHHHHHHhc-CCceEEEEe--eecc---h--HHHHHH--HH----HHHHhc--------CCCCEEEE
Confidence 68999999995 3455555443 223222111 0000 0 001000 00 000000 22248899
Q ss_pred cchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhc--CCCcEEEEccccccCCCCCCccEEEEcCC--------
Q 007280 412 ETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS--GKTPILVATDVAARGLDIPHVAHVVNFDL-------- 481 (609)
Q Consensus 412 ~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~--g~~~ILVaT~v~~~GlDip~v~~VI~~d~-------- 481 (609)
++++.++.+++.|...++.+..+||+|++.+|+++++.|++ |+++|||||+++++|||| +|++||++++
T Consensus 328 ~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~ 406 (677)
T 3rc3_A 328 FSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEK 406 (677)
T ss_dssp SSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC------
T ss_pred cCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccC
Confidence 99999999999999999999999999999999999999999 889999999999999999 9999999999
Q ss_pred ------CCCHHHHHHHhhhcccCCCC---ceEEEEEcC
Q 007280 482 ------PNDIDDYVHRIGRTGRAGKS---GLATAFFNE 510 (609)
Q Consensus 482 ------p~s~~~y~QriGRagR~g~~---G~~~~f~~~ 510 (609)
|.+.++|+||+|||||.|+. |.|+.++.+
T Consensus 407 G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 407 GERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp -----CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred CccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 78999999999999999964 666665543
No 64
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.9e-35 Score=294.22 Aligned_cols=203 Identities=35% Similarity=0.531 Sum_probs=179.7
Q ss_pred CccccCC--CCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccc
Q 007280 145 NTFAEID--LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (609)
Q Consensus 145 ~~f~~~~--l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~ 222 (609)
.+|+++. +++.+.+.+..++|.+|+|+|.++|+.++.++|+++++|||||||++|++|++..+....... ..
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~------~~ 125 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMP------RN 125 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCG------GG
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccc------cC
Confidence 4577776 999999999999999999999999999999999999999999999999999999887643211 12
Q ss_pred cceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccc-ccccceEEE
Q 007280 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-VSLQMIRYL 301 (609)
Q Consensus 223 ~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~-~~l~~i~~l 301 (609)
++.+|||+||++||.|++++++++....++.+..++|+.....+...+..+++|+|+||++|.+++.... +.+.++++|
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 3459999999999999999999999888899999999999888888888889999999999999887753 678899999
Q ss_pred EeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCc
Q 007280 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANY 357 (609)
Q Consensus 302 VlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~ 357 (609)
||||||+|++++|.+++..|+..+ +..+|+++||||++++++++++.++.++
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~----~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLL----PTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHS----CSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred EEcChHHHhhhhHHHHHHHHHHhC----CCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 999999999999999999999998 6678999999999999999999888754
No 65
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=293.87 Aligned_cols=222 Identities=34% Similarity=0.547 Sum_probs=188.4
Q ss_pred cccccCCCCCcccCccccC----CCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHH
Q 007280 132 PVETSGENVPPAVNTFAEI----DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGI 207 (609)
Q Consensus 132 ~v~~~~~~~p~~~~~f~~~----~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l 207 (609)
.+.+.+.+.|.|+.+|+++ ++++.+.+.+..++|.+|+|+|+++|+.+++++|+++++|||+|||++|++|++..+
T Consensus 12 ~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 12 KIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp TEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 4566778889999999988 899999999999999999999999999999999999999999999999999999887
Q ss_pred HhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHH-HHHhcCCCEEEeChHHHHH
Q 007280 208 MREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL-RELERGVDILVATPGRLVD 286 (609)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~-~~l~~~~~IlV~Tpg~L~~ 286 (609)
.... ..++++|||+||++|+.|++++++++....++++..++++....... .....+++|+|+||++|.+
T Consensus 92 ~~~~---------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~ 162 (245)
T 3dkp_A 92 KQPA---------NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIY 162 (245)
T ss_dssp CSCC---------SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHH
T ss_pred hhcc---------cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHH
Confidence 5321 12345999999999999999999999888888888777664332221 1123468999999999999
Q ss_pred HHHcc--cccccceEEEEeccchhhhh---cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEE
Q 007280 287 LLERA--RVSLQMIRYLALDEADRMLD---MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLA 361 (609)
Q Consensus 287 ~l~~~--~~~l~~i~~lVlDEah~~l~---~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~ 361 (609)
++... ...+.++++|||||||+|++ .+|...+..++..+. ....|+++||||++++++++++.++.+++.+.
T Consensus 163 ~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~ 239 (245)
T 3dkp_A 163 LLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT---SHKVRRAMFSATFAYDVEQWCKLNLDNVISVS 239 (245)
T ss_dssp HHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC---CTTCEEEEEESSCCHHHHHHHHHHSSSCEEEE
T ss_pred HHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC---CCCcEEEEEeccCCHHHHHHHHHhCCCCEEEE
Confidence 99876 46788999999999999998 578899999887763 34689999999999999999999999999988
Q ss_pred eccc
Q 007280 362 VGRV 365 (609)
Q Consensus 362 ~~~~ 365 (609)
++..
T Consensus 240 ~~~~ 243 (245)
T 3dkp_A 240 IGAR 243 (245)
T ss_dssp ECC-
T ss_pred eCCC
Confidence 7654
No 66
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.2e-34 Score=318.07 Aligned_cols=306 Identities=15% Similarity=0.195 Sum_probs=212.1
Q ss_pred CCCHHHHHHHhhHh----CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~----~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
+|+|+|.++++.+. .++++|++++||+|||++++. ++..+...... ..+|||||+ .|+.||.++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~~~~----------~~~LIv~P~-~l~~qw~~e 104 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKENEL----------TPSLVICPL-SVLKNWEEE 104 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHTTCC----------SSEEEEECS-TTHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhcCCC----------CCEEEEccH-HHHHHHHHH
Confidence 69999999998763 578899999999999998654 44444433221 129999995 688999999
Q ss_pred HHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHH
Q 007280 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~ 322 (609)
+++|... +++.+++|+... .....++|+|+||+.|..... +....+++||+||||++.+.. ......+
T Consensus 105 ~~~~~~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l 172 (500)
T 1z63_A 105 LSKFAPH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAV 172 (500)
T ss_dssp HHHHCTT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHH
T ss_pred HHHHCCC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHH
Confidence 9998753 556665555421 112357999999999876543 334568999999999987654 2344555
Q ss_pred HHcCCCCCCCceEEEEEeeccH-HHHHH---H---------------------------------HHhhcCcEEEEeccc
Q 007280 323 QQMDMPPPGMRQTMLFSATFPK-EIQRL---A---------------------------------SDFLANYIFLAVGRV 365 (609)
Q Consensus 323 ~~l~~~~~~~~q~il~SAT~~~-~~~~l---~---------------------------------~~~l~~~~~~~~~~~ 365 (609)
..+ ...+.+++|||+.. .+.++ + ..++.. +.+.....
T Consensus 173 ~~l-----~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~-~~lrr~k~ 246 (500)
T 1z63_A 173 KEL-----KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISP-FILRRTKY 246 (500)
T ss_dssp HTS-----CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTT-TEECCCTT
T ss_pred Hhh-----ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhh-Heeeeccc
Confidence 554 23568999999732 11111 1 111222 22211111
Q ss_pred C----CcccceeEEEEEEec---------------------------------------------------------cch
Q 007280 366 G----SSTDLIVQRVEFVHE---------------------------------------------------------SDK 384 (609)
Q Consensus 366 ~----~~~~~i~q~~~~~~~---------------------------------------------------------~~k 384 (609)
. ...+........++. ..|
T Consensus 247 ~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K 326 (500)
T 1z63_A 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGK 326 (500)
T ss_dssp CHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHH
T ss_pred ccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchh
Confidence 0 011112222222221 122
Q ss_pred HHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC-CCCcEEecCccCHHHHHHHHHhhhcC-CCc-EEEEc
Q 007280 385 RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-GFPATTIHGDRTQQERELALRSFKSG-KTP-ILVAT 461 (609)
Q Consensus 385 ~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~R~~~~~~F~~g-~~~-ILVaT 461 (609)
...+.+++..... ...++||||+++..++.+++.|... ++.+..+||++++.+|++++++|+++ ..+ |||+|
T Consensus 327 ~~~l~~~l~~~~~-----~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st 401 (500)
T 1z63_A 327 MIRTMEIIEEALD-----EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 401 (500)
T ss_dssp HHHHHHHHHHHHT-----TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEEC
T ss_pred HHHHHHHHHHHHc-----cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEec
Confidence 3333444444332 3678999999999999999999875 89999999999999999999999998 555 79999
Q ss_pred cccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEE
Q 007280 462 DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF 507 (609)
Q Consensus 462 ~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f 507 (609)
+++++|||+|.+++||+||+|+|+..|+||+||++|.|+...++++
T Consensus 402 ~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 402 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp CCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEE
T ss_pred ccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEE
Confidence 9999999999999999999999999999999999999997766443
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1e-34 Score=280.31 Aligned_cols=204 Identities=39% Similarity=0.634 Sum_probs=183.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccce
Q 007280 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (609)
Q Consensus 146 ~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~ 225 (609)
+|++++|++.+.+.+..++|.+|+|+|+++++.+++++++++++|||+|||++|++|++..+..... ....++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-------~~~~~~ 74 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-------RGRKPR 74 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-------TTCCCS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-------cCCCCc
Confidence 5899999999999999999999999999999999999999999999999999999999987754211 122356
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEecc
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 305 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDE 305 (609)
+||++||++|+.|++++++++... +++..++|+.....+...+..+++|+|+||++|.+++......+..+++||+||
T Consensus 75 ~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 75 ALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred EEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 999999999999999999998654 678888999988888888888899999999999999988778889999999999
Q ss_pred chhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEEe
Q 007280 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAV 362 (609)
Q Consensus 306 ah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~ 362 (609)
||++++++|...+..++..+ +...|+++||||++++++++++.++.+++.+.+
T Consensus 153 ah~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 153 ADEMLSMGFEEEVEALLSAT----PPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----CTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhHhhccchHHHHHHHHHhC----CccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999887 567899999999999999999999999987754
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-34 Score=283.22 Aligned_cols=208 Identities=32% Similarity=0.501 Sum_probs=180.6
Q ss_pred CCcccCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCC
Q 007280 140 VPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219 (609)
Q Consensus 140 ~p~~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~ 219 (609)
.+....+|++++|++.+.+.+..++|.+|+|+|+++++.+++++|+++++|||+|||++|++|++..+....
T Consensus 9 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~-------- 80 (220)
T 1t6n_A 9 VSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT-------- 80 (220)
T ss_dssp -----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT--------
T ss_pred ccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC--------
Confidence 344456799999999999999999999999999999999999999999999999999999999987763321
Q ss_pred ccccceEEEEcCcHHHHHHHHHHHHHhhccC-CeEEEEEECCcChHHHHHHHhc-CCCEEEeChHHHHHHHHcccccccc
Q 007280 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQM 297 (609)
Q Consensus 220 ~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~ 297 (609)
..+.+|||+||++|+.|++++++++.... ++++.+++|+.....+...+.. .++|+|+||++|.+++......+..
T Consensus 81 --~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 81 --GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp --TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred --CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 12359999999999999999999998665 7899999999988877777765 4699999999999999888778899
Q ss_pred eEEEEeccchhhhh-cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCcEEEE
Q 007280 298 IRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLA 361 (609)
Q Consensus 298 i~~lVlDEah~~l~-~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~ 361 (609)
+++||+||||++++ .+|...+..++..+ +...|+++||||++++++++++.++.+++.+.
T Consensus 159 ~~~lViDEah~~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 159 IKHFILDECDKMLEQLDMRRDVQEIFRMT----PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp CCEEEEESHHHHHSSHHHHHHHHHHHHTS----CSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred CCEEEEcCHHHHhcccCcHHHHHHHHHhC----CCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999999999987 57888888888876 56789999999999999999999999987764
No 69
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.9e-35 Score=344.33 Aligned_cols=332 Identities=18% Similarity=0.190 Sum_probs=220.8
Q ss_pred CCCCHHHHHHHhhHhC--CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIG--GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~--~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~ 243 (609)
.+|+|+|.+++..++. ..++|++++||+|||++++..+...+. ..... .+|||||+ .|+.||..++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~-~g~~~----------rvLIVvP~-sLl~Qw~~E~ 219 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLL-SGAAE----------RVLIIVPE-TLQHQWLVEM 219 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHH-TSSCC----------CEEEECCT-TTHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHH-hCCCC----------eEEEEeCH-HHHHHHHHHH
Confidence 4699999999988775 457899999999999998775554443 22211 29999999 9999999999
Q ss_pred HHhhccCCeEEEEEECCcChHHHHHHH---hcCCCEEEeChHHHHHHHHc-ccccccceEEEEeccchhhhhcCCHH-HH
Q 007280 244 KKFSYQTGVKVVVAYGGAPINQQLREL---ERGVDILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFEP-QI 318 (609)
Q Consensus 244 ~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~~~~IlV~Tpg~L~~~l~~-~~~~l~~i~~lVlDEah~~l~~gf~~-~i 318 (609)
.+.. ++++.++.+... ....... ....+|+|+|++.|...... ..+....+++|||||||++....... ..
T Consensus 220 ~~~f---~l~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 220 LRRF---NLRFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HHHS---CCCCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred HHHh---CCCEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 6653 556555443322 2111111 12469999999988543211 12335578999999999987544221 11
Q ss_pred HHHHHHcCCCCCCCceEEEEEeeccH----HHHHHHH----------------------------HhhcC----------
Q 007280 319 RKIVQQMDMPPPGMRQTMLFSATFPK----EIQRLAS----------------------------DFLAN---------- 356 (609)
Q Consensus 319 ~~i~~~l~~~~~~~~q~il~SAT~~~----~~~~l~~----------------------------~~l~~---------- 356 (609)
..++..+. ....+++++|||+-. ++..++. .++..
T Consensus 296 ~~~l~~L~---~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 372 (968)
T 3dmq_A 296 YQAIEQLA---EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNM 372 (968)
T ss_dssp HHHHHHHH---TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTS
T ss_pred HHHHHHHh---hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHH
Confidence 22333331 123469999999731 1111100 00000
Q ss_pred ------------------------------------------cEEEEecccC--CcccceeEEE----------------
Q 007280 357 ------------------------------------------YIFLAVGRVG--SSTDLIVQRV---------------- 376 (609)
Q Consensus 357 ------------------------------------------~~~~~~~~~~--~~~~~i~q~~---------------- 376 (609)
.+.+...+.. .........+
T Consensus 373 L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~ 452 (968)
T 3dmq_A 373 LGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSG 452 (968)
T ss_dssp STTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHH
T ss_pred HHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHh
Confidence 0000000000 0000000000
Q ss_pred ------------------------------EEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHh
Q 007280 377 ------------------------------EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYM 426 (609)
Q Consensus 377 ------------------------------~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~ 426 (609)
..+....|...|.+++.. ....++||||+++..++.+++.|..
T Consensus 453 ~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-------~~~~k~iVF~~~~~~~~~l~~~L~~ 525 (968)
T 3dmq_A 453 IMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-------HRSQKVLVICAKAATALQLEQVLRE 525 (968)
T ss_dssp HTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-------TSSSCCCEECSSTHHHHHHHHHHHT
T ss_pred hhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-------CCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 011122345555555554 2377899999999999999999994
Q ss_pred -CCCCcEEecCccCHHHHHHHHHhhhcCC--CcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCce
Q 007280 427 -NGFPATTIHGDRTQQERELALRSFKSGK--TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 503 (609)
Q Consensus 427 -~~~~~~~ihg~~~~~~R~~~~~~F~~g~--~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~ 503 (609)
.++.+..+||+|++.+|+++++.|++++ ++|||||+++++|||+|++++||+||+|+++..|+||+||++|.|+.+.
T Consensus 526 ~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~ 605 (968)
T 3dmq_A 526 REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHD 605 (968)
T ss_dssp TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSC
T ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCce
Confidence 5999999999999999999999999998 9999999999999999999999999999999999999999999999997
Q ss_pred EEEEEcCCChhhHHHHHHHH
Q 007280 504 ATAFFNENNMSLARPLTELM 523 (609)
Q Consensus 504 ~~~f~~~~~~~~~~~l~~~l 523 (609)
|++++...+......+.+.+
T Consensus 606 v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 606 IQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp CEEEEEEETTSHHHHHHHHH
T ss_pred EEEEEecCCChHHHHHHHHH
Confidence 77775443333333343333
No 70
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=8.6e-33 Score=300.60 Aligned_cols=320 Identities=18% Similarity=0.180 Sum_probs=236.6
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.|+++|.-..-.+.+|+ |+...||+|||+++.+|++...+... .+.||+||+.||.|-++++..+
T Consensus 75 r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~-------------~vhVvT~ndyLA~rdae~m~~l 139 (822)
T 3jux_A 75 RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGK-------------GVHLVTVNDYLARRDALWMGPV 139 (822)
T ss_dssp CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS-------------CEEEEESSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCC-------------ceEEEeccHHHHHhHHHHHHHH
Confidence 68999998888888776 99999999999999999987665532 2999999999999999999999
Q ss_pred hccCCeEEEEEECC--------------------------------------------------cChHHHHHHHhcCCCE
Q 007280 247 SYQTGVKVVVAYGG--------------------------------------------------APINQQLRELERGVDI 276 (609)
Q Consensus 247 ~~~~~i~~~~~~gg--------------------------------------------------~~~~~~~~~l~~~~~I 276 (609)
...+++++.+++.. .+..+.... -.|||
T Consensus 140 ~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a--Y~~DI 217 (822)
T 3jux_A 140 YLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA--YLCDV 217 (822)
T ss_dssp HHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH--HHSSE
T ss_pred HHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH--hcCCC
Confidence 99999999998872 111111222 24899
Q ss_pred EEeChHHH-HHHHHcc------cccccceEEEEeccchhhh-hcC---------------CHHHHHHHHH----------
Q 007280 277 LVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DMG---------------FEPQIRKIVQ---------- 323 (609)
Q Consensus 277 lV~Tpg~L-~~~l~~~------~~~l~~i~~lVlDEah~~l-~~g---------------f~~~i~~i~~---------- 323 (609)
.++|..-| .|.|... ......+.|.|+||+|.+| |.. ....+..++.
T Consensus 218 tYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~v 297 (822)
T 3jux_A 218 TYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTV 297 (822)
T ss_dssp EEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEE
T ss_pred EEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEE
Confidence 99998876 4555432 1224568999999999855 210 0001111111
Q ss_pred ----------------------------------------HcC----CC-------------------------------
Q 007280 324 ----------------------------------------QMD----MP------------------------------- 328 (609)
Q Consensus 324 ----------------------------------------~l~----~~------------------------------- 328 (609)
.++ +.
T Consensus 298 dek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~G 377 (822)
T 3jux_A 298 DEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGG 377 (822)
T ss_dssp CCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGG
T ss_pred EcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchH
Confidence 000 00
Q ss_pred -------------CC---------------CCceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeE-EEEEE
Q 007280 329 -------------PP---------------GMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ-RVEFV 379 (609)
Q Consensus 329 -------------~~---------------~~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q-~~~~~ 379 (609)
.+ --.++.+||+|+..+..++.+.|.-+ .+.+.. ......+.+ .+.+.
T Consensus 378 LHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPt-nkp~~R~d~~d~vy~ 454 (822)
T 3jux_A 378 LHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPT-HKPMIRKDHDDLVFR 454 (822)
T ss_dssp HHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCC-SSCCCCEECCCEEES
T ss_pred HHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECC-CCCcceeecCcEEEe
Confidence 00 00168999999988887777666433 222322 222222222 34566
Q ss_pred eccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEE
Q 007280 380 HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 459 (609)
Q Consensus 380 ~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILV 459 (609)
....|...+++.+...... ..++||||+|++.++.|++.|...++++..+|++..+.+++.+...|+.| .|+|
T Consensus 455 t~~eK~~al~~~I~~~~~~-----gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtV 527 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKK-----GQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTI 527 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHH-----TCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEE
T ss_pred cHHHHHHHHHHHHHHHhhC-----CCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEE
Confidence 6778888888888765322 56799999999999999999999999999999996666666566666655 6999
Q ss_pred EccccccCCCCC--------CccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCCh
Q 007280 460 ATDVAARGLDIP--------HVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNM 513 (609)
Q Consensus 460 aT~v~~~GlDip--------~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~ 513 (609)
||++|+||+||+ ++.+||++++|.+...|+||+|||||.|++|.+++|++.+|.
T Consensus 528 ATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 528 ATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp EETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred EcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 999999999998 567999999999999999999999999999999999998874
No 71
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2e-31 Score=299.92 Aligned_cols=323 Identities=15% Similarity=0.173 Sum_probs=217.2
Q ss_pred CCCHHHHHHHhhHh---------CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHH
Q 007280 167 KPTPVQRHAIPISI---------GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~---------~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 237 (609)
.|+|+|.+++..+. .+...|++.+||+|||++++..+.. ++.......+ ....+|||||+ .|+.
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~-l~~~~~~~~p-----~~~~~LiV~P~-sll~ 127 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWT-LLKQSPDCKP-----EIDKVIVVSPS-SLVR 127 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHH-HHHCCTTSSC-----SCSCEEEEECH-HHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHH-HHHhCccccC-----CCCcEEEEecH-HHHH
Confidence 68999999998774 3466899999999999987665544 4333221111 11238999997 8899
Q ss_pred HHHHHHHHhhccCCeEEEEEECCcChH--HHHHHHhc------CCCEEEeChHHHHHHHHcccccccceEEEEeccchhh
Q 007280 238 QIHVEAKKFSYQTGVKVVVAYGGAPIN--QQLRELER------GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (609)
Q Consensus 238 Qi~~~~~~~~~~~~i~~~~~~gg~~~~--~~~~~l~~------~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~ 309 (609)
||.+++.+|... .+.++.++++.... ..+..+.. .++|+|+|++.|..... .+....+++||+||||++
T Consensus 128 qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 128 NWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceec
Confidence 999999999765 46677777765432 12222211 37899999999876532 233456899999999998
Q ss_pred hhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccH-H---HHH---------------HHHH------------------
Q 007280 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK-E---IQR---------------LASD------------------ 352 (609)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~-~---~~~---------------l~~~------------------ 352 (609)
.... ......+..+. ....+++|||+-. . +-. +.+.
T Consensus 205 kn~~--~~~~~al~~l~-----~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~ 277 (644)
T 1z3i_X 205 KNSD--NQTYLALNSMN-----AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDR 277 (644)
T ss_dssp CTTC--HHHHHHHHHHC-----CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHH
T ss_pred CChh--hHHHHHHHhcc-----cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHH
Confidence 7543 34444455552 2467999999621 1 000 0000
Q ss_pred ------------hhcCcEEEEeccc--CCcccceeEEEEEEeccc-----------------------------------
Q 007280 353 ------------FLANYIFLAVGRV--GSSTDLIVQRVEFVHESD----------------------------------- 383 (609)
Q Consensus 353 ------------~l~~~~~~~~~~~--~~~~~~i~q~~~~~~~~~----------------------------------- 383 (609)
.+. +..+..... ....+.....+..+....
T Consensus 278 ~~~~~~~~~L~~~l~-~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~L 356 (644)
T 1z3i_X 278 AAGEQKLQELISIVN-RCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSL 356 (644)
T ss_dssp HHHHHHHHHHHHHHH-HHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHH
Confidence 010 111111100 001111112222222111
Q ss_pred -------------------------------------------hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHH
Q 007280 384 -------------------------------------------KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADAL 420 (609)
Q Consensus 384 -------------------------------------------k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l 420 (609)
|...|..++..... ....++|||++++..++.+
T Consensus 357 rk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~----~~~~k~lIFs~~~~~~~~l 432 (644)
T 1z3i_X 357 KKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRT----TTSDKVVLVSNYTQTLDLF 432 (644)
T ss_dssp HHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHH----HCCCEEEEEESCHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhh----cCCCEEEEEEccHHHHHHH
Confidence 11111122221110 1267899999999999999
Q ss_pred HHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCc---EEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhccc
Q 007280 421 EHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTP---ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGR 497 (609)
Q Consensus 421 ~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~---ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR 497 (609)
+++|...++.+..+||.+++.+|++++++|+++... +||+|+++++|||++.+++||+||+|||+..|.|++||++|
T Consensus 433 ~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R 512 (644)
T 1z3i_X 433 EKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWR 512 (644)
T ss_dssp HHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSS
T ss_pred HHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhh
Confidence 999999999999999999999999999999998764 89999999999999999999999999999999999999999
Q ss_pred CCCCceEEE--EEcCC
Q 007280 498 AGKSGLATA--FFNEN 511 (609)
Q Consensus 498 ~g~~G~~~~--f~~~~ 511 (609)
.|++..+++ |++..
T Consensus 513 ~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 513 DGQKKTCYIYRLLSTG 528 (644)
T ss_dssp TTCCSCEEEEEEEETT
T ss_pred cCCCCceEEEEEEECC
Confidence 999765544 45544
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-32 Score=310.36 Aligned_cols=331 Identities=18% Similarity=0.220 Sum_probs=226.7
Q ss_pred CCCCHHHHHHHhhHh----CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~----~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
.+|+|+|.+++..++ .+++.|++.+||+|||++++..+. .++....... .+||||| ..|+.||.+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~-~l~~~~~~~~---------~~LIV~P-~sll~qW~~ 303 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFIS-WLIFARRQNG---------PHIIVVP-LSTMPAWLD 303 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHH-HHHHHHSCCS---------CEEEECC-TTTHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHH-HHHHhcCCCC---------CEEEEEC-chHHHHHHH
Confidence 368999999998765 788999999999999998665443 3333222111 1899999 578899999
Q ss_pred HHHHhhccCCeEEEEEECCcChHHHHHHHh------------cCCCEEEeChHHHHHHHHcccccccceEEEEeccchhh
Q 007280 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELE------------RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (609)
Q Consensus 242 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~------------~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~ 309 (609)
++.+++. .+++++++|.......+.... ..++|+|+|++.|...... +....+++|||||||++
T Consensus 304 E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 304 TFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGG
T ss_pred HHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhh
Confidence 9999864 467777777766555544432 2478999999999764332 22346899999999998
Q ss_pred hhcCCHHHHHHHHHHcCCCCCCCceEEEEEeecc----HHHHHHHHHhhc-----------------------------C
Q 007280 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP----KEIQRLASDFLA-----------------------------N 356 (609)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~----~~~~~l~~~~l~-----------------------------~ 356 (609)
.... ..+...+..+ .....+++|||+- .++..++..+.. .
T Consensus 380 kn~~--s~~~~~l~~l-----~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 452 (800)
T 3mwy_W 380 KNAE--SSLYESLNSF-----KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQ 452 (800)
T ss_dssp CCSS--SHHHHHHTTS-----EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTG
T ss_pred cCch--hHHHHHHHHh-----hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHh
Confidence 6533 3444444444 2345799999971 222222221110 1
Q ss_pred cEEEEecccC--CcccceeEEEEEEec-----------------------------------------------------
Q 007280 357 YIFLAVGRVG--SSTDLIVQRVEFVHE----------------------------------------------------- 381 (609)
Q Consensus 357 ~~~~~~~~~~--~~~~~i~q~~~~~~~----------------------------------------------------- 381 (609)
++.+...... ...+.....+..+..
T Consensus 453 p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~ 532 (800)
T 3mwy_W 453 PFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEER 532 (800)
T ss_dssp GGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHH
T ss_pred HHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHH
Confidence 1111111111 001111111222211
Q ss_pred ----------------------cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccC
Q 007280 382 ----------------------SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (609)
Q Consensus 382 ----------------------~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~ 439 (609)
..|...|.++|.... ....++|||++....++.|.++|...++.+..|||.++
T Consensus 533 ~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~-----~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~ 607 (800)
T 3mwy_W 533 VLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK-----KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVP 607 (800)
T ss_dssp HCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHT-----TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSC
T ss_pred HHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHh-----hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 122333344444332 23678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCC---cEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEE--EEcCCChh
Q 007280 440 QQERELALRSFKSGKT---PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATA--FFNENNMS 514 (609)
Q Consensus 440 ~~~R~~~~~~F~~g~~---~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~--f~~~~~~~ 514 (609)
..+|+++++.|+++.. .+||+|.++++|||++.+++||+||+|||+..++||+||++|.|++..+.+ |++.. .
T Consensus 608 ~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~--T 685 (800)
T 3mwy_W 608 SAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD--T 685 (800)
T ss_dssp HHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT--S
T ss_pred HHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC--C
Confidence 9999999999998654 489999999999999999999999999999999999999999999766554 44444 2
Q ss_pred hHHHHHHHHHH
Q 007280 515 LARPLTELMQE 525 (609)
Q Consensus 515 ~~~~l~~~l~~ 525 (609)
+-..+.+.+..
T Consensus 686 iEe~i~~~~~~ 696 (800)
T 3mwy_W 686 VEEEVLERARK 696 (800)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=6.6e-32 Score=313.77 Aligned_cols=316 Identities=15% Similarity=0.088 Sum_probs=212.9
Q ss_pred CCCHHHHHHHhhHhC--------------CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCc
Q 007280 167 KPTPVQRHAIPISIG--------------GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT 232 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~--------------~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt 232 (609)
.|+|+|.+||+.+++ +++.+++++||||||+++ ++++..+.... ..+++|||+||
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~----------~~~rvLvlvpr 339 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELD----------FIDKVFFVVDR 339 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCT----------TCCEEEEEECG
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcC----------CCceEEEEeCc
Confidence 599999999998875 368999999999999997 66664332211 11359999999
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh-cCCCEEEeChHHHHHHHHccc--ccccceEEEEeccchhh
Q 007280 233 RELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE-RGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEADRM 309 (609)
Q Consensus 233 r~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tpg~L~~~l~~~~--~~l~~i~~lVlDEah~~ 309 (609)
++|+.|+.+++.+|... .+.++.+.......+. ..++|+|+||++|.+++.... ..+..+.+||+||||++
T Consensus 340 ~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs 413 (1038)
T 2w00_A 340 KDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRS 413 (1038)
T ss_dssp GGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchh
Confidence 99999999999998643 1234555555555564 468999999999999886532 24567899999999997
Q ss_pred hhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHH----HHHHHhhcCcEEEEecc----cCCcccceeEEEEEE--
Q 007280 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ----RLASDFLANYIFLAVGR----VGSSTDLIVQRVEFV-- 379 (609)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~----~l~~~~l~~~~~~~~~~----~~~~~~~i~q~~~~~-- 379 (609)
.. ...+..|...+ +..++++||||+..... .....++.+++....-. .+...+ +...+..+
T Consensus 414 ~~---~~~~~~I~~~~-----p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p-~~v~y~~v~~ 484 (1038)
T 2w00_A 414 QF---GEAQKNLKKKF-----KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLK-FKVDYNDVRP 484 (1038)
T ss_dssp HH---HHHHHHHHHHC-----SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCC-EEEEECCCCG
T ss_pred cc---hHHHHHHHHhC-----CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCC-eEEEEEeccc
Confidence 64 23456666665 24789999999864221 11222233332211100 000000 00000000
Q ss_pred -----------------------eccchHHHHHHHHHHHHhcCc-----CCCCceEEEEecchhhHHHHHHHHHhCC---
Q 007280 380 -----------------------HESDKRSHLMDLLHAQVANGV-----HGKQALTLVFVETKKGADALEHWLYMNG--- 428 (609)
Q Consensus 380 -----------------------~~~~k~~~l~~~l~~~~~~~~-----~~~~~k~lVF~~t~~~~~~l~~~L~~~~--- 428 (609)
....+...+.+.+..+..... .....++||||.+++.|..+++.|...+
T Consensus 485 ~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~ 564 (1038)
T 2w00_A 485 QFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEA 564 (1038)
T ss_dssp GGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhh
Confidence 011112233332322221111 0124689999999999999999987643
Q ss_pred ---------CCc-EEecCc----------c----------CH-----------------------------HHHHHHHHh
Q 007280 429 ---------FPA-TTIHGD----------R----------TQ-----------------------------QERELALRS 449 (609)
Q Consensus 429 ---------~~~-~~ihg~----------~----------~~-----------------------------~~R~~~~~~ 449 (609)
+.+ +.+|++ + ++ ..|..++++
T Consensus 565 ~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~ 644 (1038)
T 2w00_A 565 ANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQR 644 (1038)
T ss_dssp TTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHH
T ss_pred cccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 455 445542 2 22 248889999
Q ss_pred hhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCC----ceEEEEEc
Q 007280 450 FKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS----GLATAFFN 509 (609)
Q Consensus 450 F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~----G~~~~f~~ 509 (609)
|++++++|||+|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|++
T Consensus 645 Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 645 VKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999999999999999999 788999999999999999999998764 66776664
No 74
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=9.8e-31 Score=248.95 Aligned_cols=181 Identities=39% Similarity=0.660 Sum_probs=149.1
Q ss_pred HHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCC
Q 007280 351 SDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (609)
Q Consensus 351 ~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~ 430 (609)
..++.+++.+.+.........+.|.+..++...|...|.++|... ..++||||+++..++.+++.|...++.
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--------~~~~lVF~~~~~~~~~l~~~L~~~g~~ 80 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT--------PPPVLIFAEKKADVDAIHEYLLLKGVE 80 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS--------CSCEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC--------CCCEEEEECCHHHHHHHHHHHHHcCCc
Confidence 346778888888877778889999999999999988888877531 457999999999999999999999999
Q ss_pred cEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcC
Q 007280 431 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 510 (609)
Q Consensus 431 ~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~ 510 (609)
+..+||+|++.+|+++++.|++|+.+|||||+++++|||+|++++||+||+|+++.+|+||+||+||.|++|.|++|+++
T Consensus 81 ~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~ 160 (191)
T 2p6n_A 81 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINK 160 (191)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECT
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C-ChhhHHHHHHHHHHhcccchHHHHHHHh
Q 007280 511 N-NMSLARPLTELMQEANQEVPAWLNRYAS 539 (609)
Q Consensus 511 ~-~~~~~~~l~~~l~~~~q~vp~~l~~~a~ 539 (609)
. +..+++.|.+++....+++|++|.++++
T Consensus 161 ~~~~~~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 161 ACDESVLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp TSCHHHHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred chhHHHHHHHHHHHHHccCcCCHHHHhhcC
Confidence 6 7888999999999999999999988764
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=1.4e-28 Score=272.14 Aligned_cols=131 Identities=19% Similarity=0.162 Sum_probs=113.8
Q ss_pred HCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHH
Q 007280 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (609)
Q Consensus 162 ~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~ 241 (609)
.++| +||++|..++|.+++|+ |++++||+|||++|++|++...+... .++||+||++||.|+++
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~-------------qv~VvTPTreLA~Qdae 138 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGK-------------GVHVVTVNDYLARRDAE 138 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCS-------------CCEEEESSHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCC-------------CEEEEeCCHHHHHHHHH
Confidence 4688 99999999999999998 99999999999999999976554321 29999999999999999
Q ss_pred HHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHH-HHHHHccc------cccc---ceEEEEeccchhhh
Q 007280 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQ---MIRYLALDEADRML 310 (609)
Q Consensus 242 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L-~~~l~~~~------~~l~---~i~~lVlDEah~~l 310 (609)
++..|...+++++.+++||.+. +.+....+|+|+|+||++| +|+|.... +.++ .+.++||||+|+||
T Consensus 139 ~m~~l~~~lGLsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 139 WMGPVYRGLGLSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHHHHTTTCCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHHHHhcCCeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999999999999999874 3344455799999999999 89887652 4577 89999999999987
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.97 E-value=5.7e-29 Score=279.83 Aligned_cols=178 Identities=22% Similarity=0.262 Sum_probs=138.0
Q ss_pred CceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEe
Q 007280 332 MRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFV 411 (609)
Q Consensus 332 ~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~ 411 (609)
..|+++||||++...... ....+...+....... ..+.+.....+...|+..|...... ..++||||
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~----p~i~v~~~~~~~~~Ll~~l~~~~~~-----~~~vlVf~ 446 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLD----PLVRVKPTENQILDLMEGIRERAAR-----GERTLVTV 446 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCC----CEEEEECSTTHHHHHHHHHHHHHHT-----TCEEEEEC
T ss_pred cCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCC----CeEEEecccchHHHHHHHHHHHHhc-----CCEEEEEE
Confidence 478999999997643221 1111111111111111 1122333445556666666655432 56899999
Q ss_pred cchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCC-----CCCHH
Q 007280 412 ETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDL-----PNDID 486 (609)
Q Consensus 412 ~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~-----p~s~~ 486 (609)
+|++.++.|+++|...++.+..+|+++++.+|.++++.|+.|+++|||||+++++|+|+|+|++||++|. |.+..
T Consensus 447 ~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~ 526 (664)
T 1c4o_A 447 LTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSER 526 (664)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHH
T ss_pred CCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHH
Q 007280 487 DYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELM 523 (609)
Q Consensus 487 ~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l 523 (609)
+|+||+|||||. .+|.|++|++..+..+.+.+.+..
T Consensus 527 ~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~ 562 (664)
T 1c4o_A 527 SLIQTIGRAARN-ARGEVWLYADRVSEAMQRAIEETN 562 (664)
T ss_dssp HHHHHHGGGTTS-TTCEEEEECSSCCHHHHHHHHHHH
T ss_pred HHHHHHCccCcC-CCCEEEEEEcCCCHHHHHHHHHHH
Confidence 999999999999 489999999998877666655443
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=2.8e-29 Score=237.79 Aligned_cols=169 Identities=63% Similarity=1.015 Sum_probs=143.6
Q ss_pred CCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHH
Q 007280 366 GSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQEREL 445 (609)
Q Consensus 366 ~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~ 445 (609)
....+++.|.+..++...|...|.++|.... +..++||||++++.++.+++.|...++.+..+||+|++.+|++
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~------~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~ 87 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATG------KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREE 87 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-------CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcC------CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHH
Confidence 3456789999999999999999998887632 3678999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHH
Q 007280 446 ALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQE 525 (609)
Q Consensus 446 ~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~ 525 (609)
+++.|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|++|.|++|+++.+...++.+.+++..
T Consensus 88 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 88 ALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp HHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHhh
Q 007280 526 ANQEVPAWLNRYASR 540 (609)
Q Consensus 526 ~~q~vp~~l~~~a~~ 540 (609)
..+++|.||.+++..
T Consensus 168 ~~~~~~~~l~~~a~~ 182 (185)
T 2jgn_A 168 AKQEVPSWLENMAYE 182 (185)
T ss_dssp TTCCCCHHHHHHHC-
T ss_pred ccCCCCHHHHHHHHH
Confidence 999999999999864
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=3.3e-28 Score=273.53 Aligned_cols=178 Identities=21% Similarity=0.273 Sum_probs=138.8
Q ss_pred CceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEe
Q 007280 332 MRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFV 411 (609)
Q Consensus 332 ~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~ 411 (609)
.+|+++||||++...... ....+...+.......+ .+.+.....+...++..|..... ...++||||
T Consensus 386 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~-----~~~~vlVf~ 452 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDP----LIDVRPIEGQIDDLIGEIQARIE-----RNERVLVTT 452 (661)
T ss_dssp CSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHT-----TTCEEEEEC
T ss_pred CCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCC----eEEEecccchHHHHHHHHHHHHh-----cCCeEEEEE
Confidence 579999999997654222 11222221111111111 12233334455566666655542 256899999
Q ss_pred cchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccccccCCCCCCccEEEEcCC-----CCCHH
Q 007280 412 ETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDL-----PNDID 486 (609)
Q Consensus 412 ~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~-----p~s~~ 486 (609)
+|+..++.|++.|...++++..+|+++++.+|.++++.|+.|+++|||||+++++|+|+|+|++||++|. |.+..
T Consensus 453 ~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~ 532 (661)
T 2d7d_A 453 LTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSER 532 (661)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHH
T ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHH
Q 007280 487 DYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELM 523 (609)
Q Consensus 487 ~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l 523 (609)
+|+||+|||||. .+|.|++|+++.+..+...+.+..
T Consensus 533 ~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~ 568 (661)
T 2d7d_A 533 SLIQTIGRAARN-AEGRVIMYADKITKSMEIAINETK 568 (661)
T ss_dssp HHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHHHH
T ss_pred HHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHHHH
Confidence 999999999998 799999999998877666655443
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=1.1e-27 Score=222.11 Aligned_cols=157 Identities=37% Similarity=0.530 Sum_probs=143.4
Q ss_pred CcccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHH
Q 007280 367 SSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELA 446 (609)
Q Consensus 367 ~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~ 446 (609)
....++.|.+..++...|...|.+++.... ..++||||++++.++.+++.|...++.+..+||+|++.+|+.+
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~-------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~ 77 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTEN-------PDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDV 77 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHC-------CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcC-------CCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence 345678999999999999999999887642 5679999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHh
Q 007280 447 LRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEA 526 (609)
Q Consensus 447 ~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~ 526 (609)
++.|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|++|.|++|+++.+..+++.+.+.+...
T Consensus 78 ~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 78 MNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp HHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred HHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888877554
Q ss_pred cccc
Q 007280 527 NQEV 530 (609)
Q Consensus 527 ~q~v 530 (609)
.+++
T Consensus 158 ~~~~ 161 (163)
T 2hjv_A 158 IQKI 161 (163)
T ss_dssp CEEC
T ss_pred cCcc
Confidence 4443
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=1e-27 Score=224.45 Aligned_cols=161 Identities=30% Similarity=0.494 Sum_probs=143.5
Q ss_pred ccceeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHH
Q 007280 369 TDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALR 448 (609)
Q Consensus 369 ~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~ 448 (609)
...+.|.+..++...|...|.+++... ...++||||++++.++.+++.|...++.+..+||+|++.+|+.+++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~ 75 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-------EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 75 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-------CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-------CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHH
Confidence 356888899999999999988888753 2567999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCC-ChhhHHHHHHHHHHhc
Q 007280 449 SFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEN-NMSLARPLTELMQEAN 527 (609)
Q Consensus 449 ~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~-~~~~~~~l~~~l~~~~ 527 (609)
.|++|+.+|||||+++++|||+|++++||+||+|+++.+|+||+||++|.|++|.|++|+++. +...++.|.+.+....
T Consensus 76 ~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (172)
T 1t5i_A 76 QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNI 155 (172)
T ss_dssp HHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCE
T ss_pred HHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcch
Confidence 999999999999999999999999999999999999999999999999999999999999875 5677888888888888
Q ss_pred ccchHHHHH
Q 007280 528 QEVPAWLNR 536 (609)
Q Consensus 528 q~vp~~l~~ 536 (609)
+++|.++..
T Consensus 156 ~~~~~~~~~ 164 (172)
T 1t5i_A 156 SELPDEIDI 164 (172)
T ss_dssp EECC-----
T ss_pred hhCChhhch
Confidence 889988655
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=8.1e-28 Score=223.61 Aligned_cols=159 Identities=33% Similarity=0.573 Sum_probs=140.4
Q ss_pred cceeEEEEEEeccc-hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHH
Q 007280 370 DLIVQRVEFVHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALR 448 (609)
Q Consensus 370 ~~i~q~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~ 448 (609)
..+.|.+..++... |...|.+++... ...++||||++++.++.+++.|...++.+..+||+|++.+|+++++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 74 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-------SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMK 74 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-------TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-------CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 35778888888777 888888888754 2578999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcc
Q 007280 449 SFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQ 528 (609)
Q Consensus 449 ~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q 528 (609)
.|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|++|.|++|+++.+...+..+.+++....+
T Consensus 75 ~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (165)
T 1fuk_A 75 EFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 154 (165)
T ss_dssp HHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCE
T ss_pred HHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred cchHHHH
Q 007280 529 EVPAWLN 535 (609)
Q Consensus 529 ~vp~~l~ 535 (609)
++|..+.
T Consensus 155 ~~~~~~~ 161 (165)
T 1fuk_A 155 ELPSDIA 161 (165)
T ss_dssp ECCSCCT
T ss_pred ccCccHH
Confidence 8876544
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=7.7e-27 Score=219.17 Aligned_cols=157 Identities=29% Similarity=0.510 Sum_probs=136.7
Q ss_pred cccceeEEEEEEeccc-hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHH
Q 007280 368 STDLIVQRVEFVHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELA 446 (609)
Q Consensus 368 ~~~~i~q~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~ 446 (609)
....+.|.+..++... |...|.+++... ...++||||++++.++.+++.|...++.+..+||+|++.+|..+
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~ 76 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-------TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASI 76 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-------CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-------CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence 3567888888888655 777777776532 26789999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEccccccCCCCCCccEEEEcCCC------CCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHH
Q 007280 447 LRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLP------NDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLT 520 (609)
Q Consensus 447 ~~~F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p------~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~ 520 (609)
++.|++|+.+|||||+++++|||+|++++||+||+| .+..+|+||+||+||.|++|.|++|++..+...+..+.
T Consensus 77 ~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~ 156 (175)
T 2rb4_A 77 IQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQ 156 (175)
T ss_dssp HHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHH
T ss_pred HHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHH
Confidence 999999999999999999999999999999999999 89999999999999999999999999999988888888
Q ss_pred HHHHHhcccch
Q 007280 521 ELMQEANQEVP 531 (609)
Q Consensus 521 ~~l~~~~q~vp 531 (609)
+.+....+++|
T Consensus 157 ~~~~~~~~~~~ 167 (175)
T 2rb4_A 157 DHFNSSIKQLN 167 (175)
T ss_dssp HHHTCCCEEEC
T ss_pred HHhcCcccccC
Confidence 87766555554
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=4.5e-26 Score=220.65 Aligned_cols=149 Identities=36% Similarity=0.539 Sum_probs=133.4
Q ss_pred eEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhc
Q 007280 373 VQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS 452 (609)
Q Consensus 373 ~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~ 452 (609)
.+....+....|...|.+++.... ..++||||++++.++.+++.|...++.+..+||+|++.+|+.+++.|++
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~-------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~ 79 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVAS-------PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQ 79 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHC-------CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHS
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCC-------CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 344556677888888888887542 6689999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcc
Q 007280 453 GKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQ 528 (609)
Q Consensus 453 g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q 528 (609)
|+.+|||||+++++|||||++++||+||+|++++.|+||+|||||.|++|.|++|++..+...++.+.+.+....+
T Consensus 80 g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~ 155 (212)
T 3eaq_A 80 GEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFK 155 (212)
T ss_dssp SSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCE
T ss_pred CCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCe
Confidence 9999999999999999999999999999999999999999999999999999999999998888888877765443
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=2.2e-25 Score=226.17 Aligned_cols=146 Identities=35% Similarity=0.548 Sum_probs=128.4
Q ss_pred eeEEEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhh
Q 007280 372 IVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFK 451 (609)
Q Consensus 372 i~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~ 451 (609)
+.+.+..+....|...|.+++.... ..++||||++++.++.+++.|...++.+..+||+|++.+|+.+++.|+
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-------~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~ 75 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-------PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFR 75 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-------CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-------CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhh
Confidence 4566778888899999988887653 667999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHH
Q 007280 452 SGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQ 524 (609)
Q Consensus 452 ~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~ 524 (609)
+|+.+|||||+++++|||||+|++||+||+|++.+.|+||+|||||.|++|.|++|++..+...++.+.+.+.
T Consensus 76 ~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~ 148 (300)
T 3i32_A 76 QGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 148 (300)
T ss_dssp HTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHT
T ss_pred cCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999988766666555443
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=1.5e-26 Score=216.01 Aligned_cols=151 Identities=35% Similarity=0.595 Sum_probs=136.2
Q ss_pred ceeEEEEEEec-cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHh
Q 007280 371 LIVQRVEFVHE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRS 449 (609)
Q Consensus 371 ~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~ 449 (609)
.+.|.+..++. ..|...|.+++... ...++||||++++.++.+++.|...++.+..+||+|++.+|+++++.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-------~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~ 75 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-------EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKR 75 (170)
Confidence 45667777776 77888887777653 25679999999999999999999999999999999999999999999
Q ss_pred hhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcc
Q 007280 450 FKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQ 528 (609)
Q Consensus 450 F~~g~~~ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q 528 (609)
|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|++|.|++|++..+...+..+.+.+....+
T Consensus 76 f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (170)
T 2yjt_D 76 LTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIK 154 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999999998888888887765443
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=210.10 Aligned_cols=170 Identities=19% Similarity=0.244 Sum_probs=122.9
Q ss_pred CCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHH-HHHH
Q 007280 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ-IHVE 242 (609)
Q Consensus 164 ~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q-i~~~ 242 (609)
...+|+|+|.++++.+++++++++++|||+|||++|+++++..+....... ..+.+||++|+++|+.| +.++
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~-------~~~~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKAS-------EPGKVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTT-------CCCCEEEEESSHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccccc-------CCCcEEEEECHHHHHHHHHHHH
Confidence 455899999999999999999999999999999999999987776543211 12349999999999999 7888
Q ss_pred HHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHccc------ccccceEEEEeccchhhhhcCCHH
Q 007280 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR------VSLQMIRYLALDEADRMLDMGFEP 316 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~------~~l~~i~~lVlDEah~~l~~gf~~ 316 (609)
++++... ++++..++|+.........+...++|+|+||++|.+++.... ..+..+++|||||||++++.++..
T Consensus 103 ~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~ 181 (216)
T 3b6e_A 103 FQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYN 181 (216)
T ss_dssp HHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHH
T ss_pred HHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHH
Confidence 8888655 678888888876555555555579999999999999987743 567889999999999998876655
Q ss_pred HHH-HHHHHc---------CCCCCCCceEEEEEee
Q 007280 317 QIR-KIVQQM---------DMPPPGMRQTMLFSAT 341 (609)
Q Consensus 317 ~i~-~i~~~l---------~~~~~~~~q~il~SAT 341 (609)
.+. .++... .....+..++|+||||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 182 NIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 543 322221 1112256799999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=7e-23 Score=225.70 Aligned_cols=307 Identities=19% Similarity=0.191 Sum_probs=170.0
Q ss_pred CCCCCCCHHHHHHHh----hHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHH
Q 007280 163 CKYVKPTPVQRHAIP----ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ 238 (609)
Q Consensus 163 ~~~~~pt~iQ~~~i~----~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 238 (609)
.+| +|+|+|.+++. .+..+++++++||||+|||++|++|++.. . +.+||++||++|+.|
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---~-------------~~~~~~~~t~~l~~q 66 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---K-------------KKVLIFTRTHSQLDS 66 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---T-------------CEEEEEESCHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---C-------------CcEEEEcCCHHHHHH
Confidence 466 89999999865 44578999999999999999999998743 1 349999999999999
Q ss_pred HHHHHHHhhccCCeEEEEEECCcCh--------H------------------------HHH---------------HHHh
Q 007280 239 IHVEAKKFSYQTGVKVVVAYGGAPI--------N------------------------QQL---------------RELE 271 (609)
Q Consensus 239 i~~~~~~~~~~~~i~~~~~~gg~~~--------~------------------------~~~---------------~~l~ 271 (609)
+.+++.++ ++++.++.|-... . +.+ +...
T Consensus 67 ~~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~ 142 (540)
T 2vl7_A 67 IYKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANL 142 (540)
T ss_dssp HHHHHGGG----TCCEEEC---------------------------------------------------------CTTG
T ss_pred HHHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHh
Confidence 99888875 3444433321100 0 000 1112
Q ss_pred cCCCEEEeChHHHHHHHHcccc-------cccceEEEEeccchhhhhcC-------CHHHHHHH----------------
Q 007280 272 RGVDILVATPGRLVDLLERARV-------SLQMIRYLALDEADRMLDMG-------FEPQIRKI---------------- 321 (609)
Q Consensus 272 ~~~~IlV~Tpg~L~~~l~~~~~-------~l~~i~~lVlDEah~~l~~g-------f~~~i~~i---------------- 321 (609)
..++|||+|+..|++.+....+ .+....+|||||||+|.+.. -..++..+
T Consensus 143 ~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~ 222 (540)
T 2vl7_A 143 KDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAK 222 (540)
T ss_dssp GGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred hcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHH
Confidence 3579999999999886554322 24567899999999984310 00010000
Q ss_pred ---------HHHcCC-----------------------------------------------------------------
Q 007280 322 ---------VQQMDM----------------------------------------------------------------- 327 (609)
Q Consensus 322 ---------~~~l~~----------------------------------------------------------------- 327 (609)
...+..
T Consensus 223 ~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 302 (540)
T 2vl7_A 223 KVKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLV 302 (540)
T ss_dssp HHHHHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEE
Confidence 000000
Q ss_pred CCCC------------CceEEEEEeeccHHHHHHHHHhhcCcEEEEecccCCcccceeEEEEE--Eec-cc-hH---HHH
Q 007280 328 PPPG------------MRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEF--VHE-SD-KR---SHL 388 (609)
Q Consensus 328 ~~~~------------~~q~il~SAT~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~--~~~-~~-k~---~~l 388 (609)
..|. ...+|++|||+.+.+ . +..++ ....... . ...+.+.. ++. .+ .. ..+
T Consensus 303 ~~P~~~~~~l~~~~~~~~~~IltSATL~p~~-~----~~~~f-~~~~~~~---~-g~~~~~~~~~l~s~f~~r~~~~~~~ 372 (540)
T 2vl7_A 303 KVPSDVNQLIEDALNVKTFKVLMSGTLPESL-T----LTNSY-KIVVNES---Y-GRGEYYYCPNVTSELRKRNSNIPIY 372 (540)
T ss_dssp EECSCHHHHHHHHTCCSSCEEEEESSCCTTC-C----CTTEE-EEECCCC-----CCCEEEECTTCCCCGGGHHHHHHHH
T ss_pred EehHHHHHHHHHhcCccCCeEEEcccCCCCc-c----cchhc-CCchhhe---e-cCCcceeccccCCCcccccCHHHHH
Confidence 0000 011366677765410 0 00000 0000000 0 00011110 111 11 11 344
Q ss_pred HHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEE--Ecccccc
Q 007280 389 MDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV--ATDVAAR 466 (609)
Q Consensus 389 ~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILV--aT~v~~~ 466 (609)
.+.|...... ..+.+|||++|.+.++.+++.|.. ++ ..+++.. .+|+++++.|+.+. .||+ +|+.+++
T Consensus 373 ~~~l~~~~~~----~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~E 442 (540)
T 2vl7_A 373 SILLKRIYEN----SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESE 442 (540)
T ss_dssp HHHHHHHHHT----CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC------
T ss_pred HHHHHHHHHh----CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceec
Confidence 5555544432 366799999999999999988754 33 4556654 46889999999864 6777 7899999
Q ss_pred CCCCCC----ccEEEEcCCCCC-H-----------------------------HHHHHHhhhcccCCCCceEEEEEcC
Q 007280 467 GLDIPH----VAHVVNFDLPND-I-----------------------------DDYVHRIGRTGRAGKSGLATAFFNE 510 (609)
Q Consensus 467 GlDip~----v~~VI~~d~p~s-~-----------------------------~~y~QriGRagR~g~~G~~~~f~~~ 510 (609)
|||+|+ +++||++++|.. + ....|.+||+-|..+.--++++++.
T Consensus 443 GiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 443 GVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp ---------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred ceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 999997 899999999842 1 2245999999997554334555543
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=9.5e-23 Score=200.64 Aligned_cols=182 Identities=15% Similarity=0.145 Sum_probs=131.4
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCc
Q 007280 153 GEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT 232 (609)
Q Consensus 153 ~~~l~~~i~~~~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt 232 (609)
++.+.+.........++++|.++++.+.++++++++|+||||||+++.++++..+..... ...+.+||++|+
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--------~~~~~~l~~~p~ 118 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--------AAECNIVVTQPR 118 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--------GGGCEEEEEESS
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--------CCceEEEEeccc
Confidence 333443344434456799999999999999999999999999999999988887765432 122459999999
Q ss_pred HHHHHHHHHHHHHhhc-cCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhh-h
Q 007280 233 RELSSQIHVEAKKFSY-QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM-L 310 (609)
Q Consensus 233 r~La~Qi~~~~~~~~~-~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~-l 310 (609)
++|+.|+++.+.+... ..+..+........ ......++|+|+||++|++++.. .++++++|||||||++ +
T Consensus 119 ~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~ 190 (235)
T 3llm_A 119 RISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDI 190 (235)
T ss_dssp HHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCH
T ss_pred hHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCc
Confidence 9999999888776532 22333322211111 00113578999999999999876 3889999999999986 7
Q ss_pred hcCCH-HHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhhcCc
Q 007280 311 DMGFE-PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANY 357 (609)
Q Consensus 311 ~~gf~-~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l~~~ 357 (609)
+++|. ..++.++... ++.|+++||||++.+. +.+.|...+
T Consensus 191 ~~~~~~~~l~~i~~~~-----~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 191 NTDFLLVVLRDVVQAY-----PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp HHHHHHHHHHHHHHHC-----TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred chHHHHHHHHHHHhhC-----CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 88877 4566666654 3589999999999875 555554444
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.87 E-value=3.6e-20 Score=204.73 Aligned_cols=314 Identities=14% Similarity=0.072 Sum_probs=199.2
Q ss_pred CCCHHHHHHHhh----HhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPI----SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 167 ~pt~iQ~~~i~~----i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
.|+|+|.+.+.. +..+++++++||||+|||++|++|++.. .+.+||++||++|+.|+.++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----------------~~~v~i~~pt~~l~~q~~~~ 66 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----------------KPKVLFVVRTHNEFYPIYRD 66 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----------------CSEEEEEESSGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----------------CCeEEEEcCCHHHHHHHHHH
Confidence 689999997764 4578999999999999999999999861 13499999999999999999
Q ss_pred HHHhhccCCeEEEEEECCcCh---------------------------------HHHH------------------HHHh
Q 007280 243 AKKFSYQTGVKVVVAYGGAPI---------------------------------NQQL------------------RELE 271 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~---------------------------------~~~~------------------~~l~ 271 (609)
+.++....+++++++.|.... .... +...
T Consensus 67 ~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 67 LTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp HTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 999877778888887763221 1111 2233
Q ss_pred cCCCEEEeChHHHHHHHHcccccc-cceEEEEeccchhhhhcCC------------------------------------
Q 007280 272 RGVDILVATPGRLVDLLERARVSL-QMIRYLALDEADRMLDMGF------------------------------------ 314 (609)
Q Consensus 272 ~~~~IlV~Tpg~L~~~l~~~~~~l-~~i~~lVlDEah~~l~~gf------------------------------------ 314 (609)
..++|||+|+..|++.+.+..+.+ ....+|||||||+|.+ -.
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~ 225 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLR 225 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999998865543322 4678999999999776 20
Q ss_pred -------------------HHHHHHHHH----------------------------Hc--------------C--C----
Q 007280 315 -------------------EPQIRKIVQ----------------------------QM--------------D--M---- 327 (609)
Q Consensus 315 -------------------~~~i~~i~~----------------------------~l--------------~--~---- 327 (609)
...+..+.. .+ . .
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~ 305 (551)
T 3crv_A 226 EVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEIS 305 (551)
T ss_dssp TSCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTH
T ss_pred HHhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHH
Confidence 001111110 00 0 0
Q ss_pred ----CCCCC-ceEEEEEeeccHHHHHHHHHhhcC-cEEEE--ecccCCcccceeEEEEEEecc----------chHHHHH
Q 007280 328 ----PPPGM-RQTMLFSATFPKEIQRLASDFLAN-YIFLA--VGRVGSSTDLIVQRVEFVHES----------DKRSHLM 389 (609)
Q Consensus 328 ----~~~~~-~q~il~SAT~~~~~~~l~~~~l~~-~~~~~--~~~~~~~~~~i~q~~~~~~~~----------~k~~~l~ 389 (609)
.-... +.+|++|||+.+ +..+.+.+--+ ..... .....+.. ..+...++... .-...+.
T Consensus 306 ~~l~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~ 382 (551)
T 3crv_A 306 YYLNLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYA 382 (551)
T ss_dssp HHHGGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHH
T ss_pred HHHHHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHH
Confidence 00122 688999999975 34444433222 22110 11112211 22333333211 1123455
Q ss_pred HHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEc--cccccC
Q 007280 390 DLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVAT--DVAARG 467 (609)
Q Consensus 390 ~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT--~v~~~G 467 (609)
+.+...... .++.+|||+++.+..+.+.+. .+.++..=.-+++ ++++++.|+.....||+|| ..+.+|
T Consensus 383 ~~i~~l~~~----~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EG 452 (551)
T 3crv_A 383 DYLLKIYFQ----AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEG 452 (551)
T ss_dssp HHHHHHHHH----CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCS
T ss_pred HHHHHHHHh----CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccc
Confidence 555544432 266799999999999988872 3343333222344 4567888864445799998 699999
Q ss_pred CCCC-----CccEEEEcCCCCC---------------------H---------HHHHHHhhhcccCCCCceEEEEEcC
Q 007280 468 LDIP-----HVAHVVNFDLPND---------------------I---------DDYVHRIGRTGRAGKSGLATAFFNE 510 (609)
Q Consensus 468 lDip-----~v~~VI~~d~p~s---------------------~---------~~y~QriGRagR~g~~G~~~~f~~~ 510 (609)
||+| .+..||...+|.. . ....|.+||+-|..+.--++++++.
T Consensus 453 iD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 453 IELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp SCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred ccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 9999 3788998877641 1 1124899999997655445555554
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=1.5e-22 Score=204.84 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=123.9
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
.+|+|+|.++++.++++++.+++++||+|||+++++++...+.... ..+|||+||++|+.|+.+++++
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------~~~lil~Pt~~L~~q~~~~l~~ 179 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE------------GKILIIVPTTALTTQMADDFVD 179 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS------------SEEEEECSSHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC------------CeEEEEECCHHHHHHHHHHHHH
Confidence 3899999999999998888999999999999999887766554221 1399999999999999999999
Q ss_pred hhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHc
Q 007280 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (609)
Q Consensus 246 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l 325 (609)
+.......+..++++..... .....++|+|+||+.|... ....+..+++|||||||++.. +.+..++..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~ 249 (282)
T 1rif_A 180 YRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGL 249 (282)
T ss_dssp HTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTC
T ss_pred hcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHh
Confidence 97766677888888865432 2224589999999987543 223578899999999999874 4667777666
Q ss_pred CCCCCCCceEEEEEeeccHHHHH
Q 007280 326 DMPPPGMRQTMLFSATFPKEIQR 348 (609)
Q Consensus 326 ~~~~~~~~q~il~SAT~~~~~~~ 348 (609)
....++++||||+++....
T Consensus 250 ----~~~~~~l~lSATp~~~~~~ 268 (282)
T 1rif_A 250 ----NNCMFKFGLSGSLRDGKAN 268 (282)
T ss_dssp ----TTCCEEEEECSSCCTTSTT
T ss_pred ----hcCCeEEEEeCCCCCcchH
Confidence 3468999999999765433
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.81 E-value=2.7e-19 Score=199.48 Aligned_cols=346 Identities=14% Similarity=0.126 Sum_probs=201.8
Q ss_pred CCCHHHHHHHh----hHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 167 KPTPVQRHAIP----ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 167 ~pt~iQ~~~i~----~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
+|+|.|.+.+. .+.++++++++||||+|||++|++|++.++.... ++++|++||++|+.|+.++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~------------~kvli~t~T~~l~~Qi~~e 70 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK------------LKVLYLVRTNSQEEQVIKE 70 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT------------CEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC------------CeEEEECCCHHHHHHHHHH
Confidence 68999998885 4457899999999999999999999999876532 3499999999999999999
Q ss_pred HHHhhccCCeEEEEEECCcCh----HH--------------HHH------------------------------------
Q 007280 243 AKKFSYQTGVKVVVAYGGAPI----NQ--------------QLR------------------------------------ 268 (609)
Q Consensus 243 ~~~~~~~~~i~~~~~~gg~~~----~~--------------~~~------------------------------------ 268 (609)
++++.....++++++.|..+. .. ...
T Consensus 71 l~~l~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~d 150 (620)
T 4a15_A 71 LRSLSSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPT 150 (620)
T ss_dssp HHHHHHHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCC
T ss_pred HHHHhhccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCC
Confidence 999987667777776654210 00 000
Q ss_pred --------------------HHhcCCCEEEeChHHHHHHHHccc----c-cccceEEEEeccchhhhhc-----------
Q 007280 269 --------------------ELERGVDILVATPGRLVDLLERAR----V-SLQMIRYLALDEADRMLDM----------- 312 (609)
Q Consensus 269 --------------------~l~~~~~IlV~Tpg~L~~~l~~~~----~-~l~~i~~lVlDEah~~l~~----------- 312 (609)
.....+||||+.+..|++...+.. + ....-.+|||||||.|.+.
T Consensus 151 ie~l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~ 230 (620)
T 4a15_A 151 AEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISV 230 (620)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEH
T ss_pred HHHHHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCH
Confidence 001136999999988766543321 1 1234468999999985431
Q ss_pred ---------------CC------HHH--------HH-----------------------------------HHHHHc---
Q 007280 313 ---------------GF------EPQ--------IR-----------------------------------KIVQQM--- 325 (609)
Q Consensus 313 ---------------gf------~~~--------i~-----------------------------------~i~~~l--- 325 (609)
.+ ... +. .++..+
T Consensus 231 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~ 310 (620)
T 4a15_A 231 ESLNRADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLF 310 (620)
T ss_dssp HHHHHHHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 00 000 00 000000
Q ss_pred ----------C-------------------CCCC-----------------------------CCceEEEEEeeccHHHH
Q 007280 326 ----------D-------------------MPPP-----------------------------GMRQTMLFSATFPKEIQ 347 (609)
Q Consensus 326 ----------~-------------------~~~~-----------------------------~~~q~il~SAT~~~~~~ 347 (609)
. .... ..+.+|++|||+.+ +.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~ 389 (620)
T 4a15_A 311 GEYVENEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FD 389 (620)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HH
T ss_pred HHHHHhhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HH
Confidence 0 0000 01246899999975 44
Q ss_pred HHHHHhhcCcEEEEecccCCcccceeEEEEEEecc--------c-hHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHH
Q 007280 348 RLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES--------D-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGAD 418 (609)
Q Consensus 348 ~l~~~~l~~~~~~~~~~~~~~~~~i~q~~~~~~~~--------~-k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~ 418 (609)
.+.+.+--+...+.+...-. .-.+.+.++... . -...+.+.|...... .++.+|||+++.+..+
T Consensus 390 ~~~~~lGl~~~~~~~~spf~---~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~----~~g~~lvlF~Sy~~l~ 462 (620)
T 4a15_A 390 FYSDITGFEIPFKKIGEIFP---PENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK----VKKNTIVYFPSYSLMD 462 (620)
T ss_dssp HHHHHHCCCCCEEECCCCSC---GGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH----HCSCEEEEESCHHHHH
T ss_pred HHHHHhCCCceeeecCCCCC---HHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh----CCCCEEEEeCCHHHHH
Confidence 44443322233333322211 111222222211 1 122344444443322 1556999999999999
Q ss_pred HHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc--ccccCCCCCC--ccEEEEcCCCCC----------
Q 007280 419 ALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD--VAARGLDIPH--VAHVVNFDLPND---------- 484 (609)
Q Consensus 419 ~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~--v~~~GlDip~--v~~VI~~d~p~s---------- 484 (609)
.+++.|. .+... ..-+++..++.+++++|+ +.-.||++|. .+.+|||+|+ +..||...+|..
T Consensus 463 ~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~ 538 (620)
T 4a15_A 463 RVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLF 538 (620)
T ss_dssp HHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHH
T ss_pred HHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHH
Confidence 9988775 22222 333455668999999999 8888999984 9999999987 778999888742
Q ss_pred ---------H----------HHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHhcc---cchHHHHHH
Q 007280 485 ---------I----------DDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEANQ---EVPAWLNRY 537 (609)
Q Consensus 485 ---------~----------~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~~q---~vp~~l~~~ 537 (609)
. ....|.+||+-|.-+.--++++++..-..+.+.|.. +++..+ ++-+||...
T Consensus 539 ~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~~~~~~~LP~-~~~~~~~~~~~~~f~~~~ 612 (620)
T 4a15_A 539 DYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRAGQFRKFIPD-MKKTSDPASDIYNFFISA 612 (620)
T ss_dssp HHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGGGGGGGGGSTT-CEEESCHHHHHHHHHHHH
T ss_pred HHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccchHHHHHhCCc-hhhhcCcHHHHHHHHhCh
Confidence 0 112599999999766544555655433444444554 333222 344455444
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.79 E-value=3.9e-19 Score=178.00 Aligned_cols=128 Identities=13% Similarity=0.216 Sum_probs=100.4
Q ss_pred EeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC-CCCcEEecCccCHHHHHHHHHhhhcC-CCc
Q 007280 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-GFPATTIHGDRTQQERELALRSFKSG-KTP 456 (609)
Q Consensus 379 ~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~R~~~~~~F~~g-~~~ 456 (609)
+....|...|.++|...... ..++||||+++..++.|.+.|... ++.+..+||++++.+|+++++.|+++ ..+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~-----~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 166 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDE-----GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVK 166 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCC
T ss_pred cccCHHHHHHHHHHHHHHhC-----CCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCC
Confidence 34567888999998877543 678999999999999999999885 99999999999999999999999998 677
Q ss_pred -EEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCCceE--EEEEcCC
Q 007280 457 -ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLA--TAFFNEN 511 (609)
Q Consensus 457 -ILVaT~v~~~GlDip~v~~VI~~d~p~s~~~y~QriGRagR~g~~G~~--~~f~~~~ 511 (609)
+||+|+++++|||++.+++||+||+|||+..|+||+||++|.|+.+.+ +.|++..
T Consensus 167 v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 167 FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp EEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred EEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 789999999999999999999999999999999999999999998765 4455554
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.78 E-value=1.2e-18 Score=171.20 Aligned_cols=139 Identities=22% Similarity=0.147 Sum_probs=108.3
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
..|+++|.++++.++++++++++++||+|||.+++.++... . ..+||++|+++|+.|+.+++++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~------------~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----S------------TPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----C------------SCEEEEESSHHHHHHHHHHHGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----C------------CCEEEEeCCHHHHHHHHHHHHh
Confidence 47999999999999998899999999999999987766532 0 1299999999999999999888
Q ss_pred hhccCCeE-EEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHH
Q 007280 246 FSYQTGVK-VVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (609)
Q Consensus 246 ~~~~~~i~-~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~ 324 (609)
| +++ +..+.|+.. ...+|+|+|++.|...+... ...+++|||||||++.+..| ..++..
T Consensus 156 ~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~----~~i~~~ 215 (237)
T 2fz4_A 156 F----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESY----VQIAQM 215 (237)
T ss_dssp G----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTH----HHHHHT
T ss_pred C----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHH----HHHHHh
Confidence 4 566 666666553 24799999999987765431 34589999999999987654 345554
Q ss_pred cCCCCCCCceEEEEEeeccHH
Q 007280 325 MDMPPPGMRQTMLFSATFPKE 345 (609)
Q Consensus 325 l~~~~~~~~q~il~SAT~~~~ 345 (609)
+ ...++|+||||++..
T Consensus 216 ~-----~~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 216 S-----IAPFRLGLTATFERE 231 (237)
T ss_dssp C-----CCSEEEEEEESCC--
T ss_pred c-----cCCEEEEEecCCCCC
Confidence 4 246789999998653
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.89 E-value=1.1e-09 Score=121.73 Aligned_cols=146 Identities=19% Similarity=0.231 Sum_probs=89.0
Q ss_pred CHHHHHHHhhHhCCCCceeeccCCCCch--HHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 169 TPVQRHAIPISIGGRDLMACAQTGSGKT--AAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 169 t~iQ~~~i~~i~~~~d~ii~a~TGsGKT--~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
++.|+++++.++.++.+++++++|+||| ++++++++..+... .++.+++++||.++|.++.+.+..+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-----------~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-----------ERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-----------CCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-----------CCCeEEEEeCChhHHHHHHHHHHHH
Confidence 7899999999999999999999999999 55566655433111 1234999999999999998887765
Q ss_pred hccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcC
Q 007280 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 326 (609)
Q Consensus 247 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~ 326 (609)
....++..... ..... +...+ ..++-.+|+.. . +.........+++||||||+ |++ .+.+..++..+
T Consensus 220 ~~~l~l~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l- 286 (608)
T 1w36_D 220 LRQLPLTDEQK-KRIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDAL- 286 (608)
T ss_dssp HHHSSCCSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTC-
T ss_pred HhcCCCCHHHH-hccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhC-
Confidence 54433221110 00000 00000 11222233221 1 11111222368999999999 665 56778888877
Q ss_pred CCCCCCceEEEEEee
Q 007280 327 MPPPGMRQTMLFSAT 341 (609)
Q Consensus 327 ~~~~~~~q~il~SAT 341 (609)
+...|+|++.-.
T Consensus 287 ---~~~~~liLvGD~ 298 (608)
T 1w36_D 287 ---PDHARVIFLGDR 298 (608)
T ss_dssp ---CTTCEEEEEECT
T ss_pred ---CCCCEEEEEcch
Confidence 567889998765
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.29 E-value=1.2e-05 Score=90.27 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=52.4
Q ss_pred CCCHHHHHHHhhHhCCCC-ceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d-~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
.+++-|++||..++..++ .||++|.|||||.+. .-++.+++..+ ..+||++||..-+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti-~~~I~~l~~~~------------~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTV-VEIILQAVKQG------------LKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHH-HHHHHHHHHTT------------CCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHH-HHHHHHHHhCC------------CeEEEEcCchHHHHHHHHHHHh
Confidence 578999999998887665 689999999999863 34555555432 2399999999999999887765
Q ss_pred h
Q 007280 246 F 246 (609)
Q Consensus 246 ~ 246 (609)
.
T Consensus 256 ~ 256 (646)
T 4b3f_X 256 C 256 (646)
T ss_dssp T
T ss_pred c
Confidence 4
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.08 E-value=9.7e-06 Score=87.03 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=50.9
Q ss_pred HHCCCCCCCHHHHHHHhhHhC-----CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHH
Q 007280 161 RRCKYVKPTPVQRHAIPISIG-----GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTREL 235 (609)
Q Consensus 161 ~~~~~~~pt~iQ~~~i~~i~~-----~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 235 (609)
..+.|..+++-|++++..++. ...+++.|+.|||||.+ +..++..+..... ..+++++||...
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~~-----------~~il~~a~T~~A 86 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTGE-----------TGIILAAPTHAA 86 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTTC-----------CCEEEEESSHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcCC-----------ceEEEecCcHHH
Confidence 345788899999999987653 23799999999999974 3445555554432 128999999888
Q ss_pred HHHHHHHH
Q 007280 236 SSQIHVEA 243 (609)
Q Consensus 236 a~Qi~~~~ 243 (609)
+..+.+.+
T Consensus 87 a~~l~~~~ 94 (459)
T 3upu_A 87 KKILSKLS 94 (459)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 87765443
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.06 E-value=1.5e-05 Score=88.96 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 165 ~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
+..+++.|++|+..++...-++|.+|+|+|||.+. ..++..+..... ..+|+++||...+.++.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~~~-----------~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQGN-----------GPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTSSS-----------CCEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHcCC-----------CeEEEEeCcHHHHHHHHHHHH
Confidence 45689999999999888777899999999999863 335555543211 239999999999999988876
Q ss_pred Hh
Q 007280 245 KF 246 (609)
Q Consensus 245 ~~ 246 (609)
+.
T Consensus 246 ~~ 247 (624)
T 2gk6_A 246 QT 247 (624)
T ss_dssp TT
T ss_pred hc
Confidence 64
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=2.8e-05 Score=88.79 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=54.9
Q ss_pred CCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 165 ~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
+..+++.|++|+..++...-++|.+|.|+|||.+. ..++..+..... ..+||++||...+.++.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~~~-----------~~ILv~a~tn~A~d~l~~rL~ 425 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKIHK-----------DRILVCAPSNVAVDHLAAKLR 425 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHHHC-----------CCEEEEESSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhCCC-----------CeEEEEcCcHHHHHHHHHHHH
Confidence 45689999999999988777899999999999863 334555544321 129999999999999988887
Q ss_pred Hh
Q 007280 245 KF 246 (609)
Q Consensus 245 ~~ 246 (609)
+.
T Consensus 426 ~~ 427 (802)
T 2xzl_A 426 DL 427 (802)
T ss_dssp HT
T ss_pred hh
Confidence 64
No 99
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.03 E-value=0.00034 Score=78.29 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
..+++-|+++|.. ....++|.|+.|||||.+.+ --+.+++....... -.+|+|++|+..+.++.+.+.+
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~-~ri~~l~~~~~~~~--------~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLV-HRIAWLMSVENCSP--------YSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHH-HHHHHHHHTSCCCG--------GGEEEEESSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHH-HHHHHHHHhCCCCh--------hhEEEEeccHHHHHHHHHHHHH
Confidence 4689999999973 35679999999999999643 34445554321110 1399999999999999998887
Q ss_pred hh
Q 007280 246 FS 247 (609)
Q Consensus 246 ~~ 247 (609)
+.
T Consensus 77 ~~ 78 (647)
T 3lfu_A 77 LM 78 (647)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 100
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.97 E-value=5.7e-05 Score=75.79 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=88.1
Q ss_pred eccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEE
Q 007280 380 HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 459 (609)
Q Consensus 380 ~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILV 459 (609)
..+.|...|-.+|..... .+.++|||++..+..+.+.++|...++....+.|.....++. . .+..+.|.+
T Consensus 106 ~~SGKf~~L~~LL~~l~~-----~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-~----~~~~~~i~L 175 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQE-----YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-A----NDFSCTVHL 175 (328)
T ss_dssp HTCHHHHHHHHHHHHHTT-----SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEE
T ss_pred HcCccHHHHHHHHHHHHh-----CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-c----ccCCceEEE
Confidence 356787777777776643 377999999999999999999999999999999985543321 1 234455555
Q ss_pred EccccccCCC-----CCCccEEEEcCCCCCHHHH-HHHhhhcccCC--C--CceEEEEEcCCCh
Q 007280 460 ATDVAARGLD-----IPHVAHVVNFDLPNDIDDY-VHRIGRTGRAG--K--SGLATAFFNENNM 513 (609)
Q Consensus 460 aT~v~~~GlD-----ip~v~~VI~~d~p~s~~~y-~QriGRagR~g--~--~G~~~~f~~~~~~ 513 (609)
.|....-|+| ....+.||.||..||+..- +|.+-|+.|.+ + +-.++-|++.+..
T Consensus 176 ltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 176 FSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp EESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred EECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 5665565665 6789999999999999885 99999999973 3 4456777776543
No 101
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.96 E-value=1.7e-05 Score=87.26 Aligned_cols=63 Identities=14% Similarity=0.078 Sum_probs=48.4
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~ 242 (609)
.+++.|++++..++..+.+++.++.|+|||.+ +..++..+...+ ..+++++||...+..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~g------------~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESLG------------LEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHTT------------CCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhcC------------CeEEEecCcHHHHHHhHhh
Confidence 57999999999999989999999999999985 333443333321 2389999999988877554
No 102
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.93 E-value=5.9e-05 Score=86.02 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=54.2
Q ss_pred CCCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 165 ~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
...+++.|++|+..++...-++|.++.|+|||.+ +..++..+..... ..+|+++||...+.++.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~~~~-----------~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQGN-----------GPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHTTCS-----------SCEEEEESSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHHcCC-----------CcEEEEcCcHHHHHHHHHHHH
Confidence 3468999999999988877789999999999986 3445555553211 139999999999999988776
Q ss_pred Hh
Q 007280 245 KF 246 (609)
Q Consensus 245 ~~ 246 (609)
+.
T Consensus 422 ~~ 423 (800)
T 2wjy_A 422 QT 423 (800)
T ss_dssp TT
T ss_pred Hh
Confidence 53
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.13 E-value=0.0032 Score=65.19 Aligned_cols=71 Identities=17% Similarity=0.080 Sum_probs=54.0
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.|+|+|+..+..+...+-+++..+-+.|||.+....++..++... +..+++++|+++.|..+.+.++.+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-----------g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----------DKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-----------SCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-----------CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 689999999987655566889999999999976655554343321 124999999999999888888776
Q ss_pred hc
Q 007280 247 SY 248 (609)
Q Consensus 247 ~~ 248 (609)
..
T Consensus 232 i~ 233 (385)
T 2o0j_A 232 IE 233 (385)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.04 E-value=0.0016 Score=59.80 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.6
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
.++.+++.+|+|+|||..
T Consensus 37 ~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp GCCEEEECCSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 367899999999999984
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.69 E-value=0.013 Score=64.59 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=55.6
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.|+|+|+..+..+...+-+++..+-++|||.+....++..++... +..+++++|+++.|..+.+.++.+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-----------~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----------DKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-----------SCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHHHHHH
Confidence 479999999987755677899999999999976654444444321 123999999999999999888877
Q ss_pred hccC
Q 007280 247 SYQT 250 (609)
Q Consensus 247 ~~~~ 250 (609)
....
T Consensus 232 i~~~ 235 (592)
T 3cpe_A 232 IELL 235 (592)
T ss_dssp HTTS
T ss_pred HHhC
Confidence 6443
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.65 E-value=0.004 Score=65.36 Aligned_cols=107 Identities=21% Similarity=0.201 Sum_probs=62.9
Q ss_pred CceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcCh
Q 007280 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~ 263 (609)
-.++.++.|||||.. +..++.. . ..+|++||++++..|.+.+.+. +. .
T Consensus 163 v~~I~G~aGsGKTt~-----I~~~~~~---~----------~~lVlTpT~~aa~~l~~kl~~~----~~--------~-- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKE-----ILSRVNF---E----------EDLILVPGRQAAEMIRRRANAS----GI--------I-- 210 (446)
T ss_dssp EEEEEECTTSCHHHH-----HHHHCCT---T----------TCEEEESCHHHHHHHHHHHTTT----SC--------C--
T ss_pred EEEEEcCCCCCHHHH-----HHHHhcc---C----------CeEEEeCCHHHHHHHHHHhhhc----Cc--------c--
Confidence 467999999999984 3333321 1 1799999999999987766442 10 0
Q ss_pred HHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 264 NQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 264 ~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
.....-|.|.+.++- .......-.+++||||||- |++. ..+..++..+ +. .+++++--+
T Consensus 211 --------~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~---~~l~~l~~~~----~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 --------VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHT---GCVNFLVEMS----LC-DIAYVYGDT 269 (446)
T ss_dssp --------CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCH---HHHHHHHHHT----TC-SEEEEEECT
T ss_pred --------ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCH---HHHHHHHHhC----CC-CEEEEecCc
Confidence 012344677666542 1111122247899999998 4443 3444444443 22 456666554
No 107
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.40 E-value=0.012 Score=66.64 Aligned_cols=110 Identities=19% Similarity=0.172 Sum_probs=71.2
Q ss_pred CCCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHH
Q 007280 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (609)
Q Consensus 166 ~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~ 245 (609)
..++|-|+++|.. ....++|.|..|||||.+.. --+.+++....... ..+|+|+.|+..|.++.+.+.+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~-~ri~~ll~~~~~~p--------~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLT-HRIAYLMAEKHVAP--------WNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHH-HHHHHHHHTTCCCG--------GGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHH-HHHHHHHHhcCCCH--------HHeEEEeccHHHHHHHHHHHHH
Confidence 4689999999975 35689999999999999633 34445554321110 1399999999999999888877
Q ss_pred hhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcc-ccccc-ceEEEEeccchh
Q 007280 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQ-MIRYLALDEADR 308 (609)
Q Consensus 246 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~-~~~l~-~i~~lVlDEah~ 308 (609)
+.... ...+-|+|...|...+.+. ...+. .-.+.|+|+.+.
T Consensus 79 ~l~~~----------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~ 121 (724)
T 1pjr_A 79 LLGGA----------------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ 121 (724)
T ss_dssp HHGGG----------------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHH
T ss_pred Hhccc----------------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHH
Confidence 63210 0247788888775544322 11110 123567887764
No 108
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.17 E-value=0.0079 Score=67.55 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=51.6
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.+++-|+++|.. ....++|.|..|||||.+.+- -+.+++....... ..+|+|+.|+..|.++.+.+.+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~-ri~~ll~~~~~~~--------~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITN-KIAHLIRGCGYQA--------RHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHH-HHHHHHHHHCCCG--------GGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHH-HHHHHHHhcCCCH--------HHeEEEeccHHHHHHHHHHHHHH
Confidence 579999999975 356799999999999996433 3444444321110 13999999999999999888876
Q ss_pred h
Q 007280 247 S 247 (609)
Q Consensus 247 ~ 247 (609)
.
T Consensus 71 l 71 (673)
T 1uaa_A 71 L 71 (673)
T ss_dssp S
T ss_pred c
Confidence 4
No 109
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.04 E-value=0.0087 Score=66.00 Aligned_cols=113 Identities=23% Similarity=0.321 Sum_probs=74.4
Q ss_pred CCCHHHHHHHhhHhC--CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 167 KPTPVQRHAIPISIG--GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~--~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+ ++..+.. .++|.+|+.+-+..+.+.+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~~---------------~~~vtAP~~~a~~~l~~~~~ 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIAG---------------RAIVTAPAKASTDVLAQFAG 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSSS---------------CEEEECSSCCSCHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHHh---------------CcEEECCCHHHHHHHHHHhh
Confidence 689999999988875 33478999999999975444 2333221 17999999886665433221
Q ss_pred HhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHH
Q 007280 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (609)
Q Consensus 245 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~ 324 (609)
+ .|-+..|..+.. .+...++||||||=.+- .+.+..++..
T Consensus 239 ~-----------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~ 278 (671)
T 2zpa_A 239 E-----------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSR 278 (671)
T ss_dssp G-----------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTT
T ss_pred C-----------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhh
Confidence 1 144456665432 23458899999998542 4666666654
Q ss_pred cCCCCCCCceEEEEEeecc
Q 007280 325 MDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 325 l~~~~~~~~q~il~SAT~~ 343 (609)
. ..++||.|+.
T Consensus 279 ~--------~~v~~~tTv~ 289 (671)
T 2zpa_A 279 F--------PRTLLTTTVQ 289 (671)
T ss_dssp S--------SEEEEEEEBS
T ss_pred C--------CeEEEEecCC
Confidence 3 3588888863
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.03 E-value=0.008 Score=55.93 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=24.6
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcH
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 233 (609)
++=.++++++|+|||.+.+ -++.++...+ -.++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~~~g------------~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAKIAK------------QKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHHHTT------------CCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHHCC------------CEEEEEEecc
Confidence 4456789999999998643 3333333222 1288888873
No 111
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.00 E-value=0.016 Score=53.61 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=24.2
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcH
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 233 (609)
++-.++.+++|+|||...+- ++..+...+ -.++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~-~~~~~~~~g------------~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLS-FVEIYKLGK------------KKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHH-HHHHHHHTT------------CEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHH-HHHHHHHCC------------CeEEEEeecc
Confidence 45578999999999996432 333332221 1278888873
No 112
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.00 E-value=0.0057 Score=54.47 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=19.9
Q ss_pred cceEEEEeccchhhhhcCCHHHHHHHHHHc
Q 007280 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~gf~~~i~~i~~~l 325 (609)
.+.++|||||++.+.+.. ...+..+++.+
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~ 110 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRF 110 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHH
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHH
Confidence 456899999999865433 55566666654
No 113
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.93 E-value=0.099 Score=51.16 Aligned_cols=49 Identities=20% Similarity=0.457 Sum_probs=27.4
Q ss_pred cceEEEEeccchhhhhc-----CCHHHH-HHHHHHcCCCCCCCceEEEEEeeccH
Q 007280 296 QMIRYLALDEADRMLDM-----GFEPQI-RKIVQQMDMPPPGMRQTMLFSATFPK 344 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~-----gf~~~i-~~i~~~l~~~~~~~~q~il~SAT~~~ 344 (609)
....+|||||+|.|+.. .+...+ ..+...+....+...+++++.+|-..
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~ 177 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRK 177 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCCh
Confidence 34679999999998532 122333 33444444332344566666666544
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.62 E-value=0.038 Score=55.77 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=14.8
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
...+++.+|+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 35799999999999984
No 115
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.60 E-value=0.019 Score=54.75 Aligned_cols=90 Identities=13% Similarity=0.184 Sum_probs=49.0
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCc
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~ 261 (609)
+.-+++.+++|+|||++.+- ++.++...+ -.++++.|...- . -...++...++..
T Consensus 12 G~i~litG~mGsGKTT~ll~-~~~r~~~~g------------~kVli~~~~~d~--r---~~~~i~srlG~~~------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR-RLHRLEYAD------------VKYLVFKPKIDT--R---SIRNIQSRTGTSL------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH-HHHHHHHTT------------CCEEEEEECCCG--G---GCSSCCCCCCCSS-------
T ss_pred cEEEEEECCCCCcHHHHHHH-HHHHHHhcC------------CEEEEEEeccCc--h---HHHHHHHhcCCCc-------
Confidence 44577899999999986433 333333222 127888775421 0 0011222222110
Q ss_pred ChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhh
Q 007280 262 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (609)
Q Consensus 262 ~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~ 309 (609)
..+.+.+...+++.+.... .-..+++|||||++.+
T Consensus 67 ------------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 ------------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp ------------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred ------------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1234556666666665432 1245789999999964
No 116
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.58 E-value=0.05 Score=55.91 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=15.0
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
...+++.+|+|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 46799999999999984
No 117
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.51 E-value=0.0099 Score=56.03 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=23.6
Q ss_pred CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHH
Q 007280 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE 234 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 234 (609)
+=.++++++|+|||++.+- ++.++...+ -+++|+.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~-~a~r~~~~g------------~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIR-RVRRTQFAK------------QHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHH-HHHHHHHTT------------CCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHH-HHHHHHHCC------------CEEEEEEeccC
Confidence 3356899999999986443 333332222 12899988753
No 118
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.037 Score=55.68 Aligned_cols=43 Identities=5% Similarity=0.084 Sum_probs=25.2
Q ss_pred cceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 007280 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~ 342 (609)
....+|||||+|++.+ ...+..++..... .....-+|+.++|+
T Consensus 131 ~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~-~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 131 KRKTLILIQNPENLLS---EKILQYFEKWISS-KNSKLSIICVGGHN 173 (318)
T ss_dssp SCEEEEEEECCSSSCC---THHHHHHHHHHHC-SSCCEEEEEECCSS
T ss_pred CCceEEEEecHHHhhc---chHHHHHHhcccc-cCCcEEEEEEecCc
Confidence 4456899999999872 2344444432211 12334566777776
No 119
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.48 E-value=0.035 Score=54.75 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=28.5
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCCHHH-HHHHhh--HhCCCCceeeccCCCCchHH
Q 007280 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQ-RHAIPI--SIGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 145 ~~f~~~~l~~~l~~~i~~~~~~~pt~iQ-~~~i~~--i~~~~d~ii~a~TGsGKT~a 198 (609)
.+|+++.-.+...+.|...-. .+.+ .+.+.. +...+.+++.+|+|+|||..
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 457777655666555543210 0000 011111 12456799999999999983
No 120
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.34 E-value=0.014 Score=54.92 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=24.5
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcH
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 233 (609)
+.-.++++++|+|||... +-.+.++...+ ..++|+.|..
T Consensus 28 G~I~vitG~M~sGKTT~L-lr~~~r~~~~g------------~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEEL-IRRLRRGIYAK------------QKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHHTT------------CCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHHHHHcC------------CceEEEEecc
Confidence 444688999999999853 33333333222 1289998864
No 121
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.05 E-value=0.12 Score=52.02 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=28.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHh-----CCCCceeeccCCCCchHH
Q 007280 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISI-----GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 145 ~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~-----~~~d~ii~a~TGsGKT~a 198 (609)
.+|+++.-.+.+.+.|...-. .|. ..|.+. ..+.+++.+|+|+|||+.
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 468888666666666653210 010 011111 235699999999999984
No 122
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.97 E-value=0.19 Score=48.55 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=14.7
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
.+.+++.+|+|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46689999999999984
No 123
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.95 E-value=0.083 Score=53.61 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=24.0
Q ss_pred CCHHHHHHHhhHh----CCC---CceeeccCCCCchHHhH
Q 007280 168 PTPVQRHAIPISI----GGR---DLMACAQTGSGKTAAFC 200 (609)
Q Consensus 168 pt~iQ~~~i~~i~----~~~---d~ii~a~TGsGKT~a~l 200 (609)
++|+|.+++..+. +++ -+++.+|.|+|||..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4688888876543 333 37899999999998543
No 124
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.91 E-value=0.055 Score=50.30 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=14.6
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
+.+++++++|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999984
No 125
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.91 E-value=0.045 Score=52.05 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=15.4
Q ss_pred CCCceeeccCCCCchHHhHH
Q 007280 182 GRDLMACAQTGSGKTAAFCF 201 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~ll 201 (609)
++=.++++++|+|||.+.+-
T Consensus 19 g~l~v~~G~MgsGKTT~lL~ 38 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMR 38 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHH
Confidence 45567899999999986443
No 126
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.91 E-value=0.19 Score=50.66 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=28.2
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHh-----CCCCceeeccCCCCchHH
Q 007280 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISI-----GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 144 ~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ~~~i~~i~-----~~~d~ii~a~TGsGKT~a 198 (609)
..+|+++.=.+.+.+.|...-. .|.+ .|.+. ..+.+++.+|+|+|||+.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 3568888655666555543100 0000 01121 236799999999999983
No 127
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.86 E-value=0.072 Score=55.93 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=38.2
Q ss_pred cceEEEEeccchhhh---hcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhh
Q 007280 296 QMIRYLALDEADRML---DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354 (609)
Q Consensus 296 ~~i~~lVlDEah~~l---~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l 354 (609)
..+++||+|++-++. +..+..++..+...+ .++.-++.++|+...+....+..|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~----~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL----KPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH----CCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhh----CCcceEEEEeCccchHHHHHHHHHh
Confidence 467899999998653 333556777777766 3455678888887666666666654
No 128
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.84 E-value=0.3 Score=45.23 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=14.0
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
..+++.+++|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3599999999999984
No 129
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.84 E-value=0.075 Score=56.20 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=25.9
Q ss_pred ceEEEEeccchhhhhc-CCHHHHHHHHHHcCCCCCCCceEEEEEeeccH
Q 007280 297 MIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (609)
Q Consensus 297 ~i~~lVlDEah~~l~~-gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~ 344 (609)
..++|||||+|.+... .....+..++..+. ....++|+.|...+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~---~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELH---DSGKQIVICSDREPQ 239 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHH---TTTCEEEEEESSCGG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHH---HCCCeEEEEECCCHH
Confidence 4679999999998753 22344555555442 223455554444343
No 130
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.58 E-value=0.051 Score=50.35 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=24.0
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCc
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT 232 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt 232 (609)
++=.++.+++|||||.. |+-.+.+....+ -+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~~------------~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIAQ------------YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHTT------------CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHcC------------CeEEEEccc
Confidence 45578999999999964 333333333221 128888776
No 131
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.57 E-value=0.043 Score=65.87 Aligned_cols=71 Identities=25% Similarity=0.256 Sum_probs=50.9
Q ss_pred CCCHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 167 ~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
++|+-|.++|..- +++++|.|..|||||.+.+--++..+...... ...-.+|||++|+..|..+.+.+.+.
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~-------~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENP-------IDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSC-------CCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCC-------CCccceEEEeccHHHHHHHHHHHHHH
Confidence 6899999999753 77999999999999997444344333321100 00113999999999999998887763
No 132
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.44 E-value=0.13 Score=58.42 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=64.2
Q ss_pred CceEEEEecchhhHHHHHHHHHh----CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEc-cccccCCCCCCccEEEE
Q 007280 404 QALTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVAT-DVAARGLDIPHVAHVVN 478 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT-~v~~~GlDip~v~~VI~ 478 (609)
..++||.++++.-+..+++.+.. .++.+..+||+++..++..+++.+.+|..+|+|+| ..+...+++.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 46799999999988887776654 37899999999999999999999999999999999 45566788889998884
No 133
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.40 E-value=0.038 Score=52.59 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.6
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
..+.+++.+|+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 357799999999999984
No 134
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.052 Score=56.97 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=35.4
Q ss_pred CcccCccccCCCCHHHHHHHHHC---CCCCCCHHHHHHHhhHhCCCCceeeccCCCCchH
Q 007280 141 PPAVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 141 p~~~~~f~~~~l~~~l~~~i~~~---~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~ 197 (609)
..|..+|++++-.+...+.|.+. .+..|.-++...++ ..+.+|+.+|+|+|||+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTl 230 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTL 230 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHH
Confidence 35667899997777776666532 12233334433332 24789999999999998
No 135
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.20 E-value=0.15 Score=52.26 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.9
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
+..+++.+++|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999983
No 136
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.18 E-value=0.28 Score=44.22 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.8
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
.+.+++++++|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 35699999999999984
No 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.09 E-value=0.14 Score=52.70 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=14.6
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
.+.+++.+|+|+|||..
T Consensus 45 ~~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 34699999999999984
No 138
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.97 E-value=0.11 Score=52.18 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=15.3
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
.+.+++.+++|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999984
No 139
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.96 E-value=0.83 Score=40.61 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=52.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH---hc-CCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
+||.|+++..+..+++.+.+. ++.+..++|+.+..+....+ .. ...|||+| +.+.. .+++..+++|
T Consensus 38 ~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-Gld~~~~~~V 107 (163)
T 2hjv_A 38 CIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAAR-GIDIENISLV 107 (163)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTT-TCCCSCCSEE
T ss_pred EEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCchhcCCEE
Confidence 999999999999998888774 67889999998765554433 22 57899999 33333 4567788888
Q ss_pred Eeccc
Q 007280 302 ALDEA 306 (609)
Q Consensus 302 VlDEa 306 (609)
|.-+.
T Consensus 108 i~~~~ 112 (163)
T 2hjv_A 108 INYDL 112 (163)
T ss_dssp EESSC
T ss_pred EEeCC
Confidence 86543
No 140
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.87 E-value=0.18 Score=51.84 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=13.7
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
.+++.+++|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 689999999999983
No 141
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.86 E-value=0.24 Score=49.74 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=19.0
Q ss_pred cceEEEEeccchhhhhcCCHHHHHHHHHHc
Q 007280 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~gf~~~i~~i~~~l 325 (609)
...++|||||+|.|........+..+++..
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~ 133 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAY 133 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhC
Confidence 367899999999886112234455555543
No 142
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.73 E-value=0.13 Score=51.18 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.5
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
..+.+++.+|+|+|||+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCSEEEEECSSSSSHHHH
T ss_pred CCceEEEECCCCcCHHHH
Confidence 456799999999999983
No 143
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.69 E-value=0.072 Score=53.08 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.0
Q ss_pred CCCceeeccCCCCchHHh
Q 007280 182 GRDLMACAQTGSGKTAAF 199 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~ 199 (609)
...+++.+|+|+|||..+
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346999999999999843
No 144
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.68 E-value=0.071 Score=48.28 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=14.8
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
...+++.+++|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 45789999999999984
No 145
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.50 E-value=1.7 Score=39.87 Aligned_cols=70 Identities=24% Similarity=0.314 Sum_probs=52.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH---h-cCCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
+||.|+++..+..+++.+++. ++.+..++|+.+..+....+ . ..+.|||+| +.+.. .+++..+++|
T Consensus 57 ~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~v~~V 126 (191)
T 2p6n_A 57 VLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPAIQHV 126 (191)
T ss_dssp EEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCCCSEE
T ss_pred EEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCcccCCEE
Confidence 999999999999998888774 67888999998765554433 2 258999999 44444 3567788888
Q ss_pred Eecc
Q 007280 302 ALDE 305 (609)
Q Consensus 302 VlDE 305 (609)
|.=+
T Consensus 127 I~~d 130 (191)
T 2p6n_A 127 INYD 130 (191)
T ss_dssp EESS
T ss_pred EEeC
Confidence 8643
No 146
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.35 E-value=0.46 Score=47.35 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.7
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
++++.+|+|+|||..
T Consensus 48 ~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTA 62 (327)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 599999999999984
No 147
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.17 E-value=0.58 Score=47.06 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=14.4
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
..+++.+++|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5799999999999983
No 148
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=93.16 E-value=1 Score=40.55 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=52.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh---c-CCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~---~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
+||.|+++..+..+++.+.+. ++.+..++|+.+..+....+. . ...|||||. .+. ..+++..+++|
T Consensus 34 ~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~~~~V 103 (172)
T 1t5i_A 34 VVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG-RGMDIERVNIA 103 (172)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCS-TTCCGGGCSEE
T ss_pred EEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chh-cCcchhhCCEE
Confidence 999999999999998888774 678889999987665544332 2 579999993 222 24567788888
Q ss_pred Eeccc
Q 007280 302 ALDEA 306 (609)
Q Consensus 302 VlDEa 306 (609)
|.-+.
T Consensus 104 i~~d~ 108 (172)
T 1t5i_A 104 FNYDM 108 (172)
T ss_dssp EESSC
T ss_pred EEECC
Confidence 86443
No 149
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.90 E-value=0.32 Score=51.08 Aligned_cols=53 Identities=13% Similarity=0.222 Sum_probs=28.8
Q ss_pred eEEEEeccchhhhh-cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhh
Q 007280 298 IRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354 (609)
Q Consensus 298 i~~lVlDEah~~l~-~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l 354 (609)
+++||+|.+=++.. .....++..+.... .++.-++.+.||...+....+..|.
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~----~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVI----HPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHH----CCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhh----cCceEEEEEeCCCchhHHHHHHHHH
Confidence 67788887754321 11233444444444 2344567777776655555555554
No 150
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.81 E-value=0.1 Score=53.99 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=30.9
Q ss_pred ccCccccCCCCHHHHHHHHHC---CCCCCCHHHHHHHhhHhCCCCceeeccCCCCchH
Q 007280 143 AVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 143 ~~~~f~~~~l~~~l~~~i~~~---~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~ 197 (609)
|..+|++.+=-+...+.|++. .+..|--++...+ ...+.+|+.+|+|+|||+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTl 197 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTL 197 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHH
Confidence 557899996444444444432 1122322333222 124789999999999998
No 151
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.67 E-value=0.36 Score=44.65 Aligned_cols=52 Identities=17% Similarity=0.351 Sum_probs=34.7
Q ss_pred cceEEEEeccchhhhhcCC--HHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHH
Q 007280 296 QMIRYLALDEADRMLDMGF--EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~gf--~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~ 351 (609)
..+++|||||+-..+..++ .+++..++... +....+|+.+--.|.++.+++.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R----p~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNAR----PGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS----CTTCEEEEECSSCCHHHHHHCS
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhC----cCCCEEEEECCCCcHHHHHhCc
Confidence 5689999999987666553 34555555543 4555666666667777766554
No 152
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=92.65 E-value=0.069 Score=54.70 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHhcccchHHHHHHHh
Q 007280 513 MSLARPLTELMQEANQEVPAWLNRYAS 539 (609)
Q Consensus 513 ~~~~~~l~~~l~~~~q~vp~~l~~~a~ 539 (609)
...+..+.+.+-+..+..|..|..+..
T Consensus 231 ~~~l~~i~~~il~~y~~~~~~L~~i~~ 257 (358)
T 2pk2_A 231 LELLDELTHEFLQILEKTPNRLKRIWN 257 (358)
T ss_dssp HHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccchhc
Confidence 334444444444445555556655543
No 153
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.61 E-value=0.24 Score=52.06 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=32.7
Q ss_pred cccCccccCCCCHHHHHHHHHCC---CCCCCHHHHHHHhhHhCCCCceeeccCCCCchH
Q 007280 142 PAVNTFAEIDLGEALNLNIRRCK---YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~i~~~~---~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~ 197 (609)
.|..+|++.+=-+.+.+.|++.= +..|--++...+ ..-+.+|+.+|+|+|||+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTl 258 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTL 258 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHH
Confidence 45578999976666666665421 112222222221 235789999999999998
No 154
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=92.57 E-value=0.44 Score=44.66 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=51.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh---c-CCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~---~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
+||.|+++.-+..+++.+.+. ++.+..++|+.+..++...+. . ..+||||| +.+.. .+++..+++|
T Consensus 34 ~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidi~~v~~V 103 (212)
T 3eaq_A 34 AMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAAR-GLDIPQVDLV 103 (212)
T ss_dssp EEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTC-SSSCCCBSEE
T ss_pred EEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhhc-CCCCccCcEE
Confidence 999999999999998888774 678899999988766554443 2 47899999 44433 3567788888
Q ss_pred Ee
Q 007280 302 AL 303 (609)
Q Consensus 302 Vl 303 (609)
|.
T Consensus 104 i~ 105 (212)
T 3eaq_A 104 VH 105 (212)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 155
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.47 E-value=0.17 Score=51.85 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=14.8
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
.+.+++.+|+|+|||+.
T Consensus 84 ~~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCCEEEECSTTSCHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 35799999999999984
No 156
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.41 E-value=0.49 Score=47.75 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=14.1
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
.++++.+|+|+|||..
T Consensus 59 ~~~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTST 74 (353)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4599999999999984
No 157
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.31 E-value=0.35 Score=43.68 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=51.7
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH---hc-CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+||.|+++..+..+++.+.+. ++.+..++|+.+..+....+ .. ..+||||| +.+. ..+++..+++
T Consensus 36 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~-~Gid~~~~~~ 105 (175)
T 2rb4_A 36 QAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-----NVCA-RGIDVKQVTI 105 (175)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-----CSCC-TTTCCTTEEE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----cchh-cCCCcccCCE
Confidence 4999999999999988877764 67888999998766554433 22 57999999 3332 3456888999
Q ss_pred EEe
Q 007280 301 LAL 303 (609)
Q Consensus 301 lVl 303 (609)
||.
T Consensus 106 Vi~ 108 (175)
T 2rb4_A 106 VVN 108 (175)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 158
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.22 E-value=1.1 Score=43.06 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=14.5
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
.+.+++.+|+|+|||..
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 35689999999999983
No 159
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.10 E-value=0.55 Score=41.89 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=51.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH---h-cCCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
+||.|+++..+..+++.+.+. ++.+..++++.+..+....+ . ....||||| +.+.. .+++..+++|
T Consensus 33 ~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-G~d~~~~~~V 102 (165)
T 1fuk_A 33 AVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLAR-GIDVQQVSLV 102 (165)
T ss_dssp EEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGTT-TCCCCSCSEE
T ss_pred EEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chhhc-CCCcccCCEE
Confidence 999999999999988888774 67888899998766554433 2 257899999 33333 3567778888
Q ss_pred Eeccc
Q 007280 302 ALDEA 306 (609)
Q Consensus 302 VlDEa 306 (609)
|.-+.
T Consensus 103 i~~~~ 107 (165)
T 1fuk_A 103 INYDL 107 (165)
T ss_dssp EESSC
T ss_pred EEeCC
Confidence 76443
No 160
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.97 E-value=0.5 Score=48.22 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.4
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
..+.+++.+|+|+|||+.
T Consensus 116 ~~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CCSEEEEESSTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 356799999999999984
No 161
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.88 E-value=1 Score=42.74 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.6
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
.+.-+++.+++|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIF 39 (247)
T ss_dssp TTCEEEEEECTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 566789999999999984
No 162
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.68 E-value=0.37 Score=49.80 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=15.1
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
.+.+|+.+++|+|||+.
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46899999999999984
No 163
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.55 E-value=0.28 Score=49.74 Aligned_cols=42 Identities=10% Similarity=0.254 Sum_probs=24.6
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
....++|||||+|. ++......+.++++.. +....+|+.|..
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~----~~~~~~Il~t~~ 173 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKY----SKNIRLIMVCDS 173 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHS----TTTEEEEEEESC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhh----cCCCEEEEEeCC
Confidence 34578999999998 4433345566666654 334445555443
No 164
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.32 E-value=0.1 Score=54.84 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=30.8
Q ss_pred cccCccccCCCCHHHHHHHHHC---CCCCCCHHHHHHHhhHhCCCCceeeccCCCCchH
Q 007280 142 PAVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~i~~~---~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~ 197 (609)
.|..+|++++=-+...+.|.+. .+..|--++...+ ...+.+|+.+|+|+|||+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTl 230 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTL 230 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHH
Confidence 4556799986545555444432 1112222222221 124789999999999998
No 165
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.30 E-value=1.4 Score=41.00 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=13.4
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
.+++.+++|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999984
No 166
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.29 E-value=1.1 Score=45.07 Aligned_cols=38 Identities=18% Similarity=0.407 Sum_probs=22.8
Q ss_pred cceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEE
Q 007280 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~ 338 (609)
...+++|+||+|.|.... ...+.++++.. +....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~----~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERY----TKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHT----TTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcC----CCCeEEEEE
Confidence 347899999999875422 34455555543 344444444
No 167
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.23 E-value=0.13 Score=53.56 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=31.0
Q ss_pred cccCccccCCCCHHHHHHHHHC---CCCCCCHHHHHHHhhHhCCCCceeeccCCCCchH
Q 007280 142 PAVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~i~~~---~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~ 197 (609)
.|..+|++++=-+.+.+.|.+. -+..|--++...++ ..+.+|+.+|+|+|||+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTl 231 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTL 231 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHH
Confidence 4557899985334444444321 12233333333322 24779999999999998
No 168
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.15 E-value=0.28 Score=49.45 Aligned_cols=18 Identities=28% Similarity=0.156 Sum_probs=15.0
Q ss_pred CCCceeeccCCCCchHHh
Q 007280 182 GRDLMACAQTGSGKTAAF 199 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~ 199 (609)
+.-+++.+++|+|||...
T Consensus 107 G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHhHHH
Confidence 466889999999999843
No 169
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.12 E-value=1.5 Score=44.44 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=13.2
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
.+++.++.|+|||..
T Consensus 40 ~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI 54 (373)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999984
No 170
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.10 E-value=0.49 Score=46.66 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=15.1
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
.+.+++.+|+|+|||+.
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 56799999999999983
No 171
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.69 E-value=0.81 Score=47.45 Aligned_cols=75 Identities=15% Similarity=0.062 Sum_probs=62.7
Q ss_pred CceEEEEecchhhHHHHHHHHHh---CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-cc----ccCCCCCCccE
Q 007280 404 QALTLVFVETKKGADALEHWLYM---NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA----ARGLDIPHVAH 475 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~---~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~----~~GlDip~v~~ 475 (609)
..++||.+|++.-+..+++.+.. .++.+..+||+.+..++...++.+..+..+|+|+|. .+ .. ++..++.+
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~ 142 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDF 142 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccE
Confidence 66799999999999999999988 578999999999999999999999999999999994 22 22 55567777
Q ss_pred EEEc
Q 007280 476 VVNF 479 (609)
Q Consensus 476 VI~~ 479 (609)
||.-
T Consensus 143 iViD 146 (414)
T 3oiy_A 143 VFVD 146 (414)
T ss_dssp EEES
T ss_pred EEEe
Confidence 7743
No 172
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.54 E-value=3.4 Score=41.78 Aligned_cols=17 Identities=47% Similarity=0.796 Sum_probs=14.9
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
++.+++.+|+|+|||..
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35799999999999984
No 173
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.30 E-value=6.2 Score=39.27 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=25.6
Q ss_pred hHHHHHHHHcccccccceEEEEeccchhhhh---cCCHHHHHHHHHHc
Q 007280 281 PGRLVDLLERARVSLQMIRYLALDEADRMLD---MGFEPQIRKIVQQM 325 (609)
Q Consensus 281 pg~L~~~l~~~~~~l~~i~~lVlDEah~~l~---~gf~~~i~~i~~~l 325 (609)
...+++.+..... .--+|||||+|.+.+ ..+...+..+....
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~ 168 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL 168 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC
Confidence 4455555543211 234899999999874 35666676666553
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.26 E-value=0.38 Score=51.81 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=25.2
Q ss_pred cceEEEEeccchhhhhcC--CHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 007280 296 QMIRYLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~g--f~~~i~~i~~~l~~~~~~~~q~il~SAT~ 342 (609)
....+|||||+|.|.... +...+..++... ...+|+.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~------~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT------STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC------SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc------CCCEEEEEcCC
Confidence 345789999999886532 224455555442 23477777664
No 175
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.03 E-value=2.3 Score=43.69 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.6
Q ss_pred CCcee--eccCCCCchHH
Q 007280 183 RDLMA--CAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii--~a~TGsGKT~a 198 (609)
..+++ .++.|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 45788 99999999984
No 176
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.00 E-value=0.27 Score=51.96 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=18.4
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
.+.-+++.|++|+|||.. ++-++..+.
T Consensus 199 ~G~l~ii~G~pg~GKT~l-al~ia~~~a 225 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAF-ALTIAQNAA 225 (444)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHH
Confidence 345578999999999974 443444443
No 177
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.93 E-value=0.73 Score=43.16 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=15.7
Q ss_pred hCCCCceeeccCCCCchHH
Q 007280 180 IGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a 198 (609)
..+.-+++.+++|+|||..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEEcCCCCCHHHH
Confidence 3466788999999999984
No 178
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=89.86 E-value=2.4 Score=38.58 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=42.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHH---HHHh-cCCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL---RELE-RGVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~-~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
+||.|+++..+..+++.++.. ++.+..++|+.+..+.. ..+. ....||||| +.+.. .+++..+++|
T Consensus 49 ~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gldi~~~~~V 118 (185)
T 2jgn_A 49 TLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISNVKHV 118 (185)
T ss_dssp EEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCSBSEE
T ss_pred EEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chhhc-CCCcccCCEE
Confidence 999999999999988887763 67888889887654432 2333 257899999 33333 3457778888
Q ss_pred Eec
Q 007280 302 ALD 304 (609)
Q Consensus 302 VlD 304 (609)
|.=
T Consensus 119 I~~ 121 (185)
T 2jgn_A 119 INF 121 (185)
T ss_dssp EES
T ss_pred EEe
Confidence 763
No 179
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=89.85 E-value=0.77 Score=45.62 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=52.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh----cCCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
+||.|+++.-+..+++.+.+. ++.+..++|+.+..++...+. ...+||||| +.+.+ .+++..+++|
T Consensus 31 ~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~-Gidi~~v~~V 100 (300)
T 3i32_A 31 AMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAAR-GLDIPQVDLV 100 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTC-STTCCCCSEE
T ss_pred EEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhc-CccccceeEE
Confidence 999999999999887777663 788999999987666544442 257899999 44444 4567888888
Q ss_pred Eecc
Q 007280 302 ALDE 305 (609)
Q Consensus 302 VlDE 305 (609)
|.=+
T Consensus 101 I~~d 104 (300)
T 3i32_A 101 VHYR 104 (300)
T ss_dssp EESS
T ss_pred EEcC
Confidence 7533
No 180
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.84 E-value=0.53 Score=46.47 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=15.9
Q ss_pred hCCCCceeeccCCCCchHH
Q 007280 180 IGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a 198 (609)
..+.-+++.+++|+|||..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred CCCeEEEEEeCCCCCHHHH
Confidence 4566788999999999984
No 181
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.82 E-value=0.35 Score=51.06 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.0
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
..+|+++|+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 3689999999999984
No 182
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.78 E-value=0.92 Score=47.79 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=28.3
Q ss_pred cCccccCCCCHHHHHHHHHCCC---CCCCHHHHHHHhhHhCCCCceeeccCCCCchHH
Q 007280 144 VNTFAEIDLGEALNLNIRRCKY---VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 144 ~~~f~~~~l~~~l~~~i~~~~~---~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a 198 (609)
..+|+++.-.+.+.+.|...-. ..|.-++ ......+.+++.+|+|+|||+.
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHH
Confidence 3568888655556555543200 0000000 0112346799999999999983
No 183
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.78 E-value=0.3 Score=46.61 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=27.8
Q ss_pred cceEEEEeccchhhhh-----cCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHH
Q 007280 296 QMIRYLALDEADRMLD-----MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~-----~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~ 345 (609)
...++|||||.-.+++ ......+..++..+. ..-.+++++.-...+
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~----~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILL----EMGVTTILTTEAPDP 184 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH----HHCCEEEEEECCC--
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHH----HCCCeEEEEECCCCC
Confidence 4578999999998886 444445666666652 112356665554443
No 184
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.71 E-value=0.4 Score=44.71 Aligned_cols=19 Identities=26% Similarity=0.121 Sum_probs=15.5
Q ss_pred CCCCceeeccCCCCchHHh
Q 007280 181 GGRDLMACAQTGSGKTAAF 199 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~ 199 (609)
.+.-+++.+++|+|||..+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566889999999999843
No 185
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.71 E-value=1.1 Score=44.89 Aligned_cols=16 Identities=13% Similarity=-0.024 Sum_probs=14.6
Q ss_pred CCCceeeccCCCCchH
Q 007280 182 GRDLMACAQTGSGKTA 197 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~ 197 (609)
++.++|.++.|+|||.
T Consensus 31 ~~~v~i~G~~G~GKT~ 46 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSS 46 (350)
T ss_dssp CSEEEEECCTTSSHHH
T ss_pred CCeEEEECCCcCCHHH
Confidence 5778999999999998
No 186
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=89.66 E-value=0.95 Score=48.16 Aligned_cols=88 Identities=18% Similarity=0.273 Sum_probs=54.9
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEEC-
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYG- 259 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~g- 259 (609)
.+....+.+-|||+||++ +..+.+... ++ +|||+|+..+|.|++++++.|... +|..+-.
T Consensus 13 ~~~~~~l~g~~gs~ka~~-----~a~l~~~~~--~p---------~lvv~~~~~~A~~l~~~l~~~~~~---~v~~fp~~ 73 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL-----VAEIAERHA--GP---------VVLIAPDMQNALRLHDEISQFTDQ---MVMNLADW 73 (483)
T ss_dssp TTCEEEEECCCTTHHHHH-----HHHHHHHSS--SC---------EEEEESSHHHHHHHHHHHHHTCSS---CEEECCCC
T ss_pred CCCeEEEeCCCchHHHHH-----HHHHHHHhC--CC---------EEEEeCCHHHHHHHHHHHHhhCCC---cEEEEeCc
Confidence 345678899999999983 333333211 11 899999999999999999998543 2322211
Q ss_pred ------CcCh-----HHHHHHH----hcCCCEEEeChHHHHHH
Q 007280 260 ------GAPI-----NQQLREL----ERGVDILVATPGRLVDL 287 (609)
Q Consensus 260 ------g~~~-----~~~~~~l----~~~~~IlV~Tpg~L~~~ 287 (609)
.... ...+..+ .....|||+|...|+..
T Consensus 74 e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~ 116 (483)
T 3hjh_A 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQR 116 (483)
T ss_dssp CSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBC
T ss_pred ccccccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhhc
Confidence 1111 1122222 23457999998887643
No 187
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.61 E-value=1.1 Score=53.08 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=63.8
Q ss_pred CceEEEEecchhhHHHHHHHHHh----CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEc-cccccCCCCCCccEEE
Q 007280 404 QALTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVAT-DVAARGLDIPHVAHVV 477 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT-~v~~~GlDip~v~~VI 477 (609)
..++||.|+|+.-+..+++.+.. .++.+..+++..+..++..+++.+..|..+|+|+| ..+...+.+.++.+||
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 55899999999999888887764 25678899999999999999999999999999999 5667778888888887
No 188
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.40 E-value=0.99 Score=44.94 Aligned_cols=43 Identities=14% Similarity=0.358 Sum_probs=24.7
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeecc
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~ 343 (609)
....+++||||||+|... ....+++.+..+ ++.. ++++.++-+
T Consensus 80 ~~~~kvviIdead~lt~~----a~naLLk~LEep-~~~t-~fIl~t~~~ 122 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ----AANAFLKALEEP-PEYA-VIVLNTRRW 122 (305)
T ss_dssp SSSSEEEEETTGGGBCHH----HHHHTHHHHHSC-CTTE-EEEEEESCG
T ss_pred cCCceEEEeccHHHhCHH----HHHHHHHHHhCC-CCCe-EEEEEECCh
Confidence 356789999999998643 334455555443 3333 344444433
No 189
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.31 E-value=0.72 Score=54.44 Aligned_cols=77 Identities=16% Similarity=0.089 Sum_probs=63.8
Q ss_pred CceEEEEecchhhHHHHHHHHHh---CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-cc----ccCCCCCCccE
Q 007280 404 QALTLVFVETKKGADALEHWLYM---NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA----ARGLDIPHVAH 475 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~---~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~----~~GlDip~v~~ 475 (609)
..++||.++++.-+..+++.|.. .++.+..+||+++..+|...++.+..+..+|||+|. .+ .. ++..++.+
T Consensus 121 ~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~ 199 (1104)
T 4ddu_A 121 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDF 199 (1104)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSE
T ss_pred CCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCE
Confidence 56799999999999999999988 467899999999998999999999999999999993 22 22 55667888
Q ss_pred EEEcCC
Q 007280 476 VVNFDL 481 (609)
Q Consensus 476 VI~~d~ 481 (609)
||.-..
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 885433
No 190
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.19 E-value=1 Score=44.68 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=13.5
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
++++.+|.|+|||..
T Consensus 44 ~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 44 HMIISGMPGIGKTTS 58 (323)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 489999999999984
No 191
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.90 E-value=0.44 Score=49.86 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=30.4
Q ss_pred cccCccccCCCCHHHHHHHHHC---CCCCCCHHHHHHHhhHhCCCCceeeccCCCCchH
Q 007280 142 PAVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~i~~~---~~~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~ 197 (609)
.|..+|++.+=-+.+.+.|.+. .+..|--++...+ ...+.+|+.+|+|+|||+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~ 221 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTM 221 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHH
Confidence 4556899986445555544321 1112222222221 124679999999999998
No 192
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.80 E-value=3.8 Score=37.94 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=53.7
Q ss_pred CceEEEEecchhhHHHHHHHHHhC-----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-cc-----ccCCCCCC
Q 007280 404 QALTLVFVETKKGADALEHWLYMN-----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA-----ARGLDIPH 472 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~-----~~GlDip~ 472 (609)
..++||.++++.-+..+++.+... ++.+..++|+.+..++... +..+..+|+|+|. .+ ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 447999999999999888877654 6788899999886665443 4456678999993 22 23467778
Q ss_pred ccEEEEc
Q 007280 473 VAHVVNF 479 (609)
Q Consensus 473 v~~VI~~ 479 (609)
+++||.-
T Consensus 159 ~~~lViD 165 (220)
T 1t6n_A 159 IKHFILD 165 (220)
T ss_dssp CCEEEEE
T ss_pred CCEEEEc
Confidence 8887743
No 193
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=88.63 E-value=3 Score=42.70 Aligned_cols=70 Identities=21% Similarity=0.280 Sum_probs=52.9
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH---hc-CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+||.|+++..+..+++.+.+. ++.+..++++.+..+....+ .. ..+||||| +.+.. .+++..+++
T Consensus 268 ~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-Gidip~~~~ 337 (412)
T 3fht_A 268 QAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCAR-GIDVEQVSV 337 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTS-SCCCTTEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Ccccc-CCCccCCCE
Confidence 4999999999999998888774 67788889998766554433 22 57899999 33333 467888999
Q ss_pred EEec
Q 007280 301 LALD 304 (609)
Q Consensus 301 lVlD 304 (609)
||.-
T Consensus 338 Vi~~ 341 (412)
T 3fht_A 338 VINF 341 (412)
T ss_dssp EEES
T ss_pred EEEE
Confidence 8853
No 194
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.58 E-value=0.61 Score=47.18 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=19.0
Q ss_pred hCCCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 180 IGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
..+.-+++.|++|+|||.. ++-++..+.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~-al~ia~~~a 71 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSL-MMNMVLSAL 71 (338)
T ss_dssp CTTCEEEEEECTTSCHHHH-HHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHH-HHHHHHHHH
Confidence 3455688999999999984 333444443
No 195
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.57 E-value=0.68 Score=43.85 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=15.8
Q ss_pred CCCCceeeccCCCCchHHh
Q 007280 181 GGRDLMACAQTGSGKTAAF 199 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~ 199 (609)
.+.-+++.+++|+|||..+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 4667889999999999843
No 196
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.22 E-value=0.84 Score=48.73 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=14.9
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
.+.+++.+|+|+|||+.
T Consensus 238 ~~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLI 254 (489)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCcEEEECcCCCCHHHH
Confidence 46799999999999983
No 197
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.84 E-value=1.1 Score=47.20 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=18.6
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
.+.-+++.|++|+|||.. ++-++..+.
T Consensus 202 ~G~liiI~G~pG~GKTtl-~l~ia~~~~ 228 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAF-ALNIAQNVA 228 (454)
T ss_dssp TTCEEEEECCTTSCHHHH-HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 455688999999999984 333444443
No 198
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=87.13 E-value=1.7 Score=46.87 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=19.3
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
..+++|.+.||||||.+ +-.++..++
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 35799999999999985 444554454
No 199
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=87.12 E-value=2.4 Score=43.66 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=52.7
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh----cCCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+||.|+++..+..+++.+++. ++.+..++++.+..+....+. ...+||||| +.+.. .+++..+++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidip~v~~ 347 (417)
T 2i4i_A 278 LTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISNVKH 347 (417)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHT-TSCCCCEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhc-CCCcccCCE
Confidence 4999999999999998888774 678889999987665544332 257999999 45544 356888988
Q ss_pred EEe
Q 007280 301 LAL 303 (609)
Q Consensus 301 lVl 303 (609)
||.
T Consensus 348 Vi~ 350 (417)
T 2i4i_A 348 VIN 350 (417)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 200
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.07 E-value=0.51 Score=47.26 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=19.0
Q ss_pred hCCCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 180 IGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
..+.-++++|++|+|||.. ++-++..+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl-~l~ia~~~a 93 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAF-ALKQAKNMS 93 (315)
T ss_dssp CTTCEEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHH-HHHHHHHHH
Confidence 3456688999999999974 333433333
No 201
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.68 E-value=1.1 Score=42.55 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=15.5
Q ss_pred CCCCceeeccCCCCchHHh
Q 007280 181 GGRDLMACAQTGSGKTAAF 199 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~ 199 (609)
.+.-+++++++|+|||...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHH
Confidence 3566889999999999843
No 202
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.64 E-value=0.59 Score=46.62 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.9
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
...+++.+++|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 36799999999999984
No 203
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=86.40 E-value=0.56 Score=47.04 Aligned_cols=18 Identities=28% Similarity=0.174 Sum_probs=14.8
Q ss_pred CCCceeeccCCCCchHHh
Q 007280 182 GRDLMACAQTGSGKTAAF 199 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~ 199 (609)
+.-+++.+++|+|||...
T Consensus 98 g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455889999999999843
No 204
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.04 E-value=0.8 Score=44.77 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=17.7
Q ss_pred HhCCCCceeeccCCCCchHHhH
Q 007280 179 SIGGRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 179 i~~~~d~ii~a~TGsGKT~a~l 200 (609)
+..+.-+++.++.|+|||+.++
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHH
Confidence 4467778999999999998443
No 205
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.90 E-value=1.6 Score=49.39 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=32.7
Q ss_pred cccCccccCCCCHHHHHHHHHCC-C--CCCCHHHHHHHhhHhCCCCceeeccCCCCchH
Q 007280 142 PAVNTFAEIDLGEALNLNIRRCK-Y--VKPTPVQRHAIPISIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 142 ~~~~~f~~~~l~~~l~~~i~~~~-~--~~pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~ 197 (609)
.|..+|.+++.-+...+.|.+.- + ..|..+++.. +...+.+|+.+|.|+|||+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~ 526 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTL 526 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchH
Confidence 45567888887777777776542 1 1121111111 1124679999999999997
No 206
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=85.69 E-value=5.8 Score=40.09 Aligned_cols=74 Identities=14% Similarity=0.235 Sum_probs=55.0
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH---hc-CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+||.|+++.-+..+++.+++. ++.+..++++.+..++...+ .. ..+||||| +.+. ..+++..+++
T Consensus 245 ~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidip~~~~ 314 (395)
T 3pey_A 245 SSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITT-----NVLA-RGIDIPTVSM 314 (395)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC-----GGGS-SSCCCTTEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chhh-cCCCcccCCE
Confidence 4999999999999998888774 67788889988766554433 22 57899999 3333 3467888999
Q ss_pred EEeccchh
Q 007280 301 LALDEADR 308 (609)
Q Consensus 301 lVlDEah~ 308 (609)
||.-....
T Consensus 315 Vi~~~~p~ 322 (395)
T 3pey_A 315 VVNYDLPT 322 (395)
T ss_dssp EEESSCCB
T ss_pred EEEcCCCC
Confidence 99765543
No 207
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.64 E-value=5.3 Score=39.31 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=13.5
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
++-+.++++.|+|||..
T Consensus 98 ~~~i~i~g~~G~GKTT~ 114 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTT 114 (295)
T ss_dssp SEEEEEECCTTTTHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44566789999999984
No 208
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=85.63 E-value=2.7 Score=45.46 Aligned_cols=75 Identities=20% Similarity=0.177 Sum_probs=55.1
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh----cCCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+||.|+|+.-+..+++.+++... .++.+..++++.+..+....+. ...+||||| +.+.. .+++..+++
T Consensus 341 ~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~~-GiDip~v~~ 413 (563)
T 3i5x_A 341 KAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPNVHE 413 (563)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTTCCE
T ss_pred cEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chhhc-CCCcccCCE
Confidence 499999999999999988887543 2678888899987665544332 358999999 34433 466888888
Q ss_pred EEeccc
Q 007280 301 LALDEA 306 (609)
Q Consensus 301 lVlDEa 306 (609)
||.-..
T Consensus 414 VI~~~~ 419 (563)
T 3i5x_A 414 VLQIGV 419 (563)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 886543
No 209
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=85.51 E-value=5.2 Score=39.98 Aligned_cols=71 Identities=17% Similarity=0.307 Sum_probs=52.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH---h-cCCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
+||.|+++.-+..+++.+++. ++++..++++.+..+....+ . ...+|||+| +.+.. .+++..+++|
T Consensus 241 ~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~~-Gid~~~~~~V 310 (367)
T 1hv8_A 241 GLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-----DVMSR-GIDVNDLNCV 310 (367)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-----TTHHH-HCCCSCCSEE
T ss_pred EEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCCcccCCEE
Confidence 899999999999998888774 67888889988765554333 2 257899999 33333 3567778888
Q ss_pred Eeccc
Q 007280 302 ALDEA 306 (609)
Q Consensus 302 VlDEa 306 (609)
|.-..
T Consensus 311 i~~~~ 315 (367)
T 1hv8_A 311 INYHL 315 (367)
T ss_dssp EESSC
T ss_pred EEecC
Confidence 86543
No 210
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.36 E-value=0.68 Score=52.38 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=14.1
Q ss_pred CCceeeccCCCCchH
Q 007280 183 RDLMACAQTGSGKTA 197 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~ 197 (609)
+.+|+.+|.|+|||+
T Consensus 239 ~GILL~GPPGTGKT~ 253 (806)
T 3cf2_A 239 RGILLYGPPGTGKTL 253 (806)
T ss_dssp CEEEEECCTTSCHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 679999999999998
No 211
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.28 E-value=4.4 Score=40.16 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.3
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
+-+++.+++|+|||+.
T Consensus 105 ~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTS 120 (306)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEEcCCCChHHHH
Confidence 3467899999999984
No 212
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=84.80 E-value=3.5 Score=41.35 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=34.7
Q ss_pred ceEEEEeccchhhh-hcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHhh
Q 007280 297 MIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354 (609)
Q Consensus 297 ~i~~lVlDEah~~l-~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~l 354 (609)
..+++++|.+-++- +.....++..+...+ .++..++++.+|...++...+..|.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral----~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVT----KPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHH----CCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHh----cCCCCEEEEecHHHHHHHHHHHHHH
Confidence 34678889887643 233445666666555 3455688888888777777666654
No 213
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=84.68 E-value=6.5 Score=39.78 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=53.9
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh---c-CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~---~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+||.|+++..+..+++.+.+. ++.+..++++.+..+....+. . ...||||| +.+. ..+++..+++
T Consensus 252 ~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~-~Gidi~~~~~ 321 (391)
T 1xti_A 252 QVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-----NLFG-RGMDIERVNI 321 (391)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEES-----CCCS-SCBCCTTEEE
T ss_pred cEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEC-----Chhh-cCCCcccCCE
Confidence 4999999999999998888774 678888899887655544332 2 57899999 2332 3456888999
Q ss_pred EEeccch
Q 007280 301 LALDEAD 307 (609)
Q Consensus 301 lVlDEah 307 (609)
||.-+.-
T Consensus 322 Vi~~~~p 328 (391)
T 1xti_A 322 AFNYDMP 328 (391)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9876543
No 214
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=84.57 E-value=2.5 Score=41.61 Aligned_cols=15 Identities=40% Similarity=0.640 Sum_probs=13.6
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
.+++.+|+|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 599999999999984
No 215
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=84.55 E-value=0.81 Score=49.60 Aligned_cols=18 Identities=33% Similarity=0.398 Sum_probs=15.5
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
.+..+++.+|+|+|||..
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466799999999999983
No 216
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=84.25 E-value=2 Score=46.27 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=54.7
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 462 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~ 462 (609)
..++||.++++.-+....+.|...++.+..+|+..+..++..++..+..+..+||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 45799999999999999999999999999999999999999999999999999999993
No 217
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=84.19 E-value=0.85 Score=48.41 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=14.2
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
+.+++.+|+|+|||+.
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999983
No 218
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=84.04 E-value=7 Score=43.25 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=56.8
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH---hc-CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
++||.|+|+..+..+.+.+.+. ++++..++++.+..+....+ .. ..+|+||| +.+.+ .+++..+++
T Consensus 447 ~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT-----~~l~~-GlDip~v~l 516 (661)
T 2d7d_A 447 RVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLLRE-GLDIPEVSL 516 (661)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES-----CCCST-TCCCTTEEE
T ss_pred eEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec-----chhhC-CcccCCCCE
Confidence 4999999999999988888774 67888888887765554443 32 57999999 33333 466888999
Q ss_pred EEeccchhh
Q 007280 301 LALDEADRM 309 (609)
Q Consensus 301 lVlDEah~~ 309 (609)
||+-|++..
T Consensus 517 Vi~~d~d~~ 525 (661)
T 2d7d_A 517 VAILDADKE 525 (661)
T ss_dssp EEETTTTCC
T ss_pred EEEeCcccc
Confidence 999998863
No 219
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=83.80 E-value=3.6 Score=44.73 Aligned_cols=76 Identities=20% Similarity=0.172 Sum_probs=55.6
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh----cCCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+||.|+|+.-+..+++.+++... .++.+..++|+.+..+....+. ...+||||| +.+.. .+++..+++
T Consensus 290 ~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~~~-GiDip~v~~ 362 (579)
T 3sqw_A 290 KAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPNVHE 362 (579)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTTCCE
T ss_pred cEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chhhc-CCCcccCCE
Confidence 499999999999999988887543 2678888899987665544332 357899999 34433 466888888
Q ss_pred EEeccch
Q 007280 301 LALDEAD 307 (609)
Q Consensus 301 lVlDEah 307 (609)
||.-..-
T Consensus 363 VI~~~~p 369 (579)
T 3sqw_A 363 VLQIGVP 369 (579)
T ss_dssp EEEESCC
T ss_pred EEEcCCC
Confidence 8865543
No 220
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.79 E-value=0.98 Score=45.78 Aligned_cols=17 Identities=24% Similarity=0.038 Sum_probs=14.2
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
+.-+++.+++|+|||..
T Consensus 122 G~i~~I~G~~GsGKTtl 138 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQL 138 (343)
T ss_dssp SEEEEEECCTTCTHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34578999999999984
No 221
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=83.46 E-value=6.5 Score=37.42 Aligned_cols=71 Identities=23% Similarity=0.293 Sum_probs=52.2
Q ss_pred CceEEEEecchhhHHHHHHHHHhC----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-c----cc--cCCCCCC
Q 007280 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-V----AA--RGLDIPH 472 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v----~~--~GlDip~ 472 (609)
..++||.++++.-+..+++.+... ++.+..++|+....++...+. ...+|+|+|. . +. ..+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999988888776554 788889999887666544432 4678999993 2 11 4567788
Q ss_pred ccEEEE
Q 007280 473 VAHVVN 478 (609)
Q Consensus 473 v~~VI~ 478 (609)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 888774
No 222
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=83.12 E-value=2.3 Score=46.68 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=17.9
Q ss_pred hHhCCCCceeeccCCCCchHH
Q 007280 178 ISIGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 178 ~i~~~~d~ii~a~TGsGKT~a 198 (609)
.+..+..+++.+|+|+|||+.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHH
Confidence 455678999999999999983
No 223
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=82.85 E-value=2.1 Score=46.79 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=53.8
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhh--hcCCCcEEEEcc
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSF--KSGKTPILVATD 462 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F--~~g~~~ILVaT~ 462 (609)
...+||.++++.-+....+.|...++.+..+|++++..++..++..+ ..+..+|||+|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 45799999999999999999999999999999999999999998888 578899999996
No 224
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=82.81 E-value=0.89 Score=46.24 Aligned_cols=20 Identities=30% Similarity=0.317 Sum_probs=16.1
Q ss_pred CCCCceeeccCCCCchHHhH
Q 007280 181 GGRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~l 200 (609)
.++-+++.++.|+|||...+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal 79 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVAL 79 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678899999999998433
No 225
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=82.78 E-value=3.6 Score=38.90 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=53.1
Q ss_pred CceEEEEecchhhHHHHHHHHHh----CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-----ccc-cCCCCCCc
Q 007280 404 QALTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-----VAA-RGLDIPHV 473 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-----v~~-~GlDip~v 473 (609)
..++||.++++.-+..+.+.+.. .++.+..++|+.+..++...+.. ..+|+|+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 56699999999998888776654 47889999999887776655543 478999993 222 34577888
Q ss_pred cEEEEc
Q 007280 474 AHVVNF 479 (609)
Q Consensus 474 ~~VI~~ 479 (609)
.+||.-
T Consensus 178 ~~lViD 183 (242)
T 3fe2_A 178 TYLVLD 183 (242)
T ss_dssp CEEEET
T ss_pred cEEEEe
Confidence 887743
No 226
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=82.71 E-value=14 Score=37.71 Aligned_cols=71 Identities=13% Similarity=0.214 Sum_probs=52.6
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh----cCCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+||.|+++..+..+++.+.+. ++.+..++|+.+..+....+. ....|||+|. .+.. .+++..+++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidi~~v~~ 347 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWAR-GLDVPQVSL 347 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSS-SCCCTTEEE
T ss_pred cEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhC-cCCcccCCE
Confidence 3999999999999988888774 678888899987655443332 2578999993 3333 467888999
Q ss_pred EEecc
Q 007280 301 LALDE 305 (609)
Q Consensus 301 lVlDE 305 (609)
||.-.
T Consensus 348 Vi~~~ 352 (410)
T 2j0s_A 348 IINYD 352 (410)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 88643
No 227
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=82.61 E-value=1.4 Score=40.12 Aligned_cols=121 Identities=11% Similarity=0.099 Sum_probs=69.1
Q ss_pred CHHHHHHHhhHhCC--CCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 169 TPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 169 t~iQ~~~i~~i~~~--~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
.+-|+.++..++.. +-.++.+.-|++||...+--++ .+.++.. -.+.||+|+..-.....+.+.
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~-~~a~~~G-----------r~V~vLAp~~~s~~~l~~~~~-- 101 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELV-MMAREQG-----------REVQIIAADRRSQMNMKQDER-- 101 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHH-HHHHHTT-----------CCEEEECSTTHHHHHHSCTTT--
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHH-HHHHhcC-----------eEEEEEcCchHHHHHHHhhcC--
Confidence 45689999888743 4577899999999997544333 3333221 229999999776555422211
Q ss_pred hccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHHcC
Q 007280 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 326 (609)
Q Consensus 247 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~ 326 (609)
+.. +++ |- ..+......|..=++||+|||-+|.- .++..++....
T Consensus 102 -----l~~--------------------~t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS~----kE~~~Lld~A~ 146 (189)
T 2l8b_A 102 -----LSG--------------------ELI--TG----RRQLLEGMAFTPGSTVIVDQGEKLSL----KETLTLLDGAA 146 (189)
T ss_dssp -----CSS--------------------CSS--ST----TTTTTTSCCCCCCCEEEEEESSSHHH----HHHHHHHHHHH
T ss_pred -----cCc--------------------cee--eh----hhhhcCCCCCCCCCEEEEechhhcCH----HHHHHHHHHHH
Confidence 110 111 10 11222223234445899999998763 45555555432
Q ss_pred CCCCCCceEEEEEee
Q 007280 327 MPPPGMRQTMLFSAT 341 (609)
Q Consensus 327 ~~~~~~~q~il~SAT 341 (609)
..+.|+|++--+
T Consensus 147 ---~~naqvvll~~~ 158 (189)
T 2l8b_A 147 ---RHNVQVLITDSG 158 (189)
T ss_dssp ---HTTCCEEEEESS
T ss_pred ---hcCCEEEEeCCc
Confidence 234677777544
No 228
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=82.48 E-value=4.1 Score=37.82 Aligned_cols=18 Identities=28% Similarity=0.172 Sum_probs=15.2
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
.+.-+.+.+|+|+|||+.
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456688999999999983
No 229
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=82.43 E-value=12 Score=37.86 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=52.5
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH---hc-CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+||.|++++-+..+++.+++. ++.+..++++.+..+....+ .. ...||||| +.+. ..+++..+++
T Consensus 260 ~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-----~~~~-~Gidip~~~~ 329 (400)
T 1s2m_A 260 QAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-----DLLT-RGIDIQAVNV 329 (400)
T ss_dssp EEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-----SCSS-SSCCCTTEEE
T ss_pred cEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-----Cccc-cCCCccCCCE
Confidence 4999999999999998888775 67788889988766554333 22 57899999 3333 3466888898
Q ss_pred EEecc
Q 007280 301 LALDE 305 (609)
Q Consensus 301 lVlDE 305 (609)
||.-+
T Consensus 330 Vi~~~ 334 (400)
T 1s2m_A 330 VINFD 334 (400)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88643
No 230
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=82.15 E-value=5.4 Score=39.96 Aligned_cols=19 Identities=42% Similarity=0.772 Sum_probs=16.6
Q ss_pred HhCCCCceeeccCCCCchH
Q 007280 179 SIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 179 i~~~~d~ii~a~TGsGKT~ 197 (609)
+..+..++++++||||||+
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 3468889999999999998
No 231
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=81.79 E-value=6.3 Score=36.81 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=51.4
Q ss_pred CceEEEEecchhhHHHHHHHHHhC-----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-cc-----ccCCCCCC
Q 007280 404 QALTLVFVETKKGADALEHWLYMN-----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA-----ARGLDIPH 472 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~-----~~GlDip~ 472 (609)
..++||.++++.-+..+++.+... ++.+..++|+....++...+ ...+|+|+|. .+ ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 567999999999999988887653 57788899998876655443 2578999994 22 23456677
Q ss_pred ccEEEE
Q 007280 473 VAHVVN 478 (609)
Q Consensus 473 v~~VI~ 478 (609)
+++||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 777764
No 232
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=82.43 E-value=0.29 Score=44.05 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=47.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH---hc-CCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
+||.|+++..+..+++.+++. ++.+..++|+.+..+....+ .. ...||||| +.+.. .+++..+++|
T Consensus 33 ~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gid~~~~~~V 102 (170)
T 2yjt_D 33 SIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAAR-GIDIPDVSHV 102 (170)
Confidence 899999999999888777664 67788888887654443333 22 46899999 33333 2456667777
Q ss_pred Eecc
Q 007280 302 ALDE 305 (609)
Q Consensus 302 VlDE 305 (609)
|.-+
T Consensus 103 i~~~ 106 (170)
T 2yjt_D 103 FNFD 106 (170)
Confidence 6533
No 233
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=81.41 E-value=1.4 Score=45.14 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=19.1
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
.++-+++.+++|+|||.. ++.++..+.
T Consensus 73 ~G~li~I~G~pGsGKTtl-al~la~~~~ 99 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTL-ALAIVAQAQ 99 (366)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHH-HHHHHHHHH
Confidence 456688999999999984 444444444
No 234
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=81.38 E-value=0.65 Score=48.95 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=18.7
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
.+.-+++.|++|+|||.. ++-++..+.
T Consensus 196 ~G~liiIaG~pG~GKTtl-al~ia~~~a 222 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAF-ALKQAKNMS 222 (444)
T ss_dssp SSCEEEEEECSSSSHHHH-HHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHH-HHHHHHHHH
Confidence 455588999999999984 343444443
No 235
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.78 E-value=5.7 Score=39.16 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=27.9
Q ss_pred cceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeecc-HHHHHHHH
Q 007280 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP-KEIQRLAS 351 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~-~~~~~l~~ 351 (609)
...++||||.+-+.. .-...+..+...+... .....++++.+|.. .++.++++
T Consensus 181 ~~~dlvIiDT~G~~~--~~~~~~~el~~~l~~~-~~~~~~lVl~at~~~~~~~~~~~ 234 (296)
T 2px0_A 181 SEYDHVFVDTAGRNF--KDPQYIDELKETIPFE-SSIQSFLVLSATAKYEDMKHIVK 234 (296)
T ss_dssp GGSSEEEEECCCCCT--TSHHHHHHHHHHSCCC-TTEEEEEEEETTBCHHHHHHHTT
T ss_pred cCCCEEEEeCCCCCh--hhHHHHHHHHHHHhhc-CCCeEEEEEECCCCHHHHHHHHH
Confidence 667999999775432 1233444454444211 12234677767754 34444443
No 236
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=80.72 E-value=4.7 Score=36.77 Aligned_cols=72 Identities=21% Similarity=0.145 Sum_probs=51.0
Q ss_pred CCceEEEEecchhhHHHHHHHHHhC--CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-c----cc-cCCCCCCcc
Q 007280 403 KQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-V----AA-RGLDIPHVA 474 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v----~~-~GlDip~v~ 474 (609)
...++||.++++..+..+++.+... .+.+..++|+....+....+. ...+|+|+|. . +. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3567999999999999999888765 467788888876554443332 2578999994 1 22 346677788
Q ss_pred EEEE
Q 007280 475 HVVN 478 (609)
Q Consensus 475 ~VI~ 478 (609)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 237
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=80.68 E-value=1.1 Score=38.98 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=16.5
Q ss_pred HhCCCCceeeccCCCCchH
Q 007280 179 SIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 179 i~~~~d~ii~a~TGsGKT~ 197 (609)
+....++++.+++|+|||.
T Consensus 24 ~~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp HTCSSCEEEEEETTCCHHH
T ss_pred hCCCCcEEEECCCCccHHH
Confidence 4456789999999999997
No 238
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=80.61 E-value=6.2 Score=41.05 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=51.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh---c-CCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~---~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
+||.|+++.-|..+++.+.+. ++.+..++|+.+..+....+. . .+.|||||. .+.+ .+++..+++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~r-GlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASR-GLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTS-SCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhC-CCCcccCCEE
Confidence 899999999999998888774 678899999987665544432 2 579999993 4333 4668888888
Q ss_pred Ee
Q 007280 302 AL 303 (609)
Q Consensus 302 Vl 303 (609)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 239
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=80.50 E-value=10 Score=40.21 Aligned_cols=58 Identities=21% Similarity=0.187 Sum_probs=30.0
Q ss_pred ceEEEEeccchhhh-hcCCHHHHHHHHHHcCC--CCCCCceEEEEEeeccHHHHHHHHHhh
Q 007280 297 MIRYLALDEADRML-DMGFEPQIRKIVQQMDM--PPPGMRQTMLFSATFPKEIQRLASDFL 354 (609)
Q Consensus 297 ~i~~lVlDEah~~l-~~gf~~~i~~i~~~l~~--~~~~~~q~il~SAT~~~~~~~l~~~~l 354 (609)
.+++||||=+=++- +.....++.+++..++. +..+..-++.+.||...+....++.|.
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~ 435 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFH 435 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHH
Confidence 45688888775431 11122334444333211 112234467889988766666666654
No 240
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=80.42 E-value=3.6 Score=38.43 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=47.4
Q ss_pred CCceEEEEecchhhHHHHHHHHHhC---CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-cc-----ccCCCCCCc
Q 007280 403 KQALTLVFVETKKGADALEHWLYMN---GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA-----ARGLDIPHV 473 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~~---~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~-----~~GlDip~v 473 (609)
...++||.++++.-+..+++.+... ++.+..++++.+..++...+ . ...+|+|+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3567999999999999998888763 67788888887655443333 2 2478999993 11 235667778
Q ss_pred cEEEE
Q 007280 474 AHVVN 478 (609)
Q Consensus 474 ~~VI~ 478 (609)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87774
No 241
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=79.75 E-value=5.3 Score=41.46 Aligned_cols=72 Identities=24% Similarity=0.276 Sum_probs=49.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEEC--------CcChHHHHHH---Hhc-CCCEEEeChHHHHHHHHcccc
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYG--------GAPINQQLRE---LER-GVDILVATPGRLVDLLERARV 293 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~g--------g~~~~~~~~~---l~~-~~~IlV~Tpg~L~~~l~~~~~ 293 (609)
+||.|+++..+..+++.+++. ++++..++| +.+..++... +.. .+.|||+| +.+.. .+
T Consensus 364 ~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T-----~~~~~-Gl 433 (494)
T 1wp9_A 364 IIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT-----SVGEE-GL 433 (494)
T ss_dssp EEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC-----GGGGG-GG
T ss_pred EEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEEC-----Ccccc-CC
Confidence 999999999999988888774 778888888 5554443333 222 47999999 23332 46
Q ss_pred cccceEEEEeccch
Q 007280 294 SLQMIRYLALDEAD 307 (609)
Q Consensus 294 ~l~~i~~lVlDEah 307 (609)
++..+++||+-+..
T Consensus 434 dl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 434 DVPEVDLVVFYEPV 447 (494)
T ss_dssp GSTTCCEEEESSCC
T ss_pred CchhCCEEEEeCCC
Confidence 68888888866544
No 242
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=79.74 E-value=5.4 Score=45.67 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.7
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
..++++++++|+|||..
T Consensus 191 ~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCCEEEECTTSCHHHH
T ss_pred CCceEEEcCCCCCHHHH
Confidence 35799999999999984
No 243
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=79.44 E-value=0.38 Score=49.18 Aligned_cols=20 Identities=5% Similarity=0.243 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHhcccchHHH
Q 007280 515 LARPLTELMQEANQEVPAWL 534 (609)
Q Consensus 515 ~~~~l~~~l~~~~q~vp~~l 534 (609)
....|.+++......+|...
T Consensus 237 i~~~il~~y~~~~~~L~~i~ 256 (358)
T 2pk2_A 237 LTHEFLQILEKTPNRLKRIW 256 (358)
T ss_dssp HHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHhCcccccchh
Confidence 34445555555444444433
No 244
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=79.36 E-value=1.3 Score=46.39 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=31.9
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 237 (609)
...++++.++||||||.. +.+++..++..+ ..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~~g------------~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLLRG------------DRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHHTT------------CEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHHCC------------CcEEEEeCCCchhH
Confidence 457899999999999996 444555555432 23888889888854
No 245
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=79.17 E-value=1.3 Score=42.94 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=19.7
Q ss_pred HhCCCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 179 i~~~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
+..+.-+++++|||||||+. +-++..++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl--l~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT--IASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH--HHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHH--HHHHHHhC
Confidence 34566788999999999983 33444444
No 246
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=79.01 E-value=25 Score=38.77 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=55.8
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHH---Hhc-CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
++||.|+|+..+..+.+.+.+. ++++..++++.+..+.... +.. ..+|+||| +.+.. .+++..+++
T Consensus 441 ~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l~~-GlDip~v~l 510 (664)
T 1c4o_A 441 RTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLLRE-GLDIPEVSL 510 (664)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCCCT-TCCCTTEEE
T ss_pred EEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chhhc-CccCCCCCE
Confidence 4999999999999988888774 6788888888776555444 333 47999999 33333 456888999
Q ss_pred EEeccchh
Q 007280 301 LALDEADR 308 (609)
Q Consensus 301 lVlDEah~ 308 (609)
||+=+++.
T Consensus 511 VI~~d~d~ 518 (664)
T 1c4o_A 511 VAILDADK 518 (664)
T ss_dssp EEETTTTS
T ss_pred EEEeCCcc
Confidence 99988875
No 247
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.69 E-value=2 Score=53.23 Aligned_cols=21 Identities=29% Similarity=0.172 Sum_probs=17.3
Q ss_pred CCCCceeeccCCCCchHHhHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCF 201 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~ll 201 (609)
.++.+++++|+|+|||..++-
T Consensus 1426 ~g~~vll~GppGtGKT~LA~a 1446 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQ 1446 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 368899999999999985433
No 248
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=78.40 E-value=1.3 Score=38.36 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=16.5
Q ss_pred hCCCCceeeccCCCCchHH
Q 007280 180 IGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a 198 (609)
....++++.+++|+|||..
T Consensus 22 ~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TCCSCEEEESSTTSSHHHH
T ss_pred CCCCCEEEECCCCCCHHHH
Confidence 4567899999999999984
No 249
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=78.25 E-value=2 Score=43.66 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.5
Q ss_pred CCCCceeeccCCCCchH
Q 007280 181 GGRDLMACAQTGSGKTA 197 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~ 197 (609)
.+.-+++++|||||||+
T Consensus 122 ~~g~i~I~GptGSGKTT 138 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKST 138 (356)
T ss_dssp SSEEEEEECSTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 44568899999999998
No 250
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=77.34 E-value=12 Score=33.83 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=49.5
Q ss_pred CceEEEEecchhhHHHHHHHHHhC-----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-c----ccc-CCCCCC
Q 007280 404 QALTLVFVETKKGADALEHWLYMN-----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-V----AAR-GLDIPH 472 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v----~~~-GlDip~ 472 (609)
..++||.++++.-+..+.+.+... +..+..++|+....+.... + ....+|+|+|. . +.. -+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999998888877543 5678889998876554322 2 34678999994 2 222 345667
Q ss_pred ccEEEE
Q 007280 473 VAHVVN 478 (609)
Q Consensus 473 v~~VI~ 478 (609)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777774
No 251
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=77.18 E-value=4.1 Score=41.79 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=22.5
Q ss_pred CHHHHHHHhhHh---CCCCceeeccCCCCchHH
Q 007280 169 TPVQRHAIPISI---GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 169 t~iQ~~~i~~i~---~~~d~ii~a~TGsGKT~a 198 (609)
-..=..+|..++ .|+.+.+.+++|+|||..
T Consensus 158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtL 190 (422)
T 3ice_A 158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTML 190 (422)
T ss_dssp THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHH
T ss_pred ccccceeeeeeeeecCCcEEEEecCCCCChhHH
Confidence 334456666554 588999999999999984
No 252
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=76.32 E-value=9.1 Score=35.93 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=44.4
Q ss_pred CceEEEEecchhhHHHHHHHHHhC----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-----cccc-CCCCCCc
Q 007280 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-----VAAR-GLDIPHV 473 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-----v~~~-GlDip~v 473 (609)
..++||.++++..+..+.+.+... ++.+..++++....+ .++.+..+...|+|+|. .+.+ .+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 567999999999999888888654 466777777654332 33455567789999992 3333 3666777
Q ss_pred cEEEE
Q 007280 474 AHVVN 478 (609)
Q Consensus 474 ~~VI~ 478 (609)
.+||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87774
No 253
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=75.24 E-value=4.9 Score=37.66 Aligned_cols=70 Identities=19% Similarity=0.129 Sum_probs=48.2
Q ss_pred CceEEEEecchhhHHHHHHHHHhC----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-cc----cc--CCCCCC
Q 007280 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA----AR--GLDIPH 472 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~----~~--GlDip~ 472 (609)
..++||.++++.-+..+++.+... ++.+..+||+.+..+....+ ...+|+|+|. .+ .. .+++.+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 567999999999999888888764 47788899987655443333 3678999993 22 12 356677
Q ss_pred ccEEEE
Q 007280 473 VAHVVN 478 (609)
Q Consensus 473 v~~VI~ 478 (609)
+++||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777764
No 254
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=74.66 E-value=1.5 Score=44.70 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=18.3
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGI 207 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l 207 (609)
.+.-++|.+|+|+|||.. ++.++..+
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHH
Confidence 356688999999999983 44444433
No 255
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=74.54 E-value=7.2 Score=45.76 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=56.1
Q ss_pred CceEEEEecchhhHHHHHHHHHhC----CC----CcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-ccccCCC-CCCc
Q 007280 404 QALTLVFVETKKGADALEHWLYMN----GF----PATTIHGDRTQQERELALRSFKSGKTPILVATD-VAARGLD-IPHV 473 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~----~~----~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~~~GlD-ip~v 473 (609)
..++||.++++.-+..+++.+... ++ .+..+||+.+..++.+.++.++. .+|||+|. .+..-+. +.++
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l 176 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHF 176 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccC
Confidence 567999999999999888877643 55 78899999999888888888887 89999994 2222222 5577
Q ss_pred cEEEE
Q 007280 474 AHVVN 478 (609)
Q Consensus 474 ~~VI~ 478 (609)
++||.
T Consensus 177 ~~lVi 181 (1054)
T 1gku_B 177 DFIFV 181 (1054)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77774
No 256
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=73.75 E-value=2.5 Score=44.29 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=44.2
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhc-CCCEEEeChHHHHHHHHcccccccceEEEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLA 302 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lV 302 (609)
.+||+||+++-+..+++.+++. ++++..++|. ...+.+..+.. ..+||||| +.++.+ +++. +++||
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT-----~v~e~G-iDip-v~~VI 245 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILAT-----DIAEMG-ANLC-VERVL 245 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEES-----SSTTCC-TTCC-CSEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEEC-----Chhhee-eccC-ceEEE
Confidence 3999999999999999888875 6788888883 33444444443 47999999 444443 4566 77776
No 257
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=73.29 E-value=9.9 Score=42.88 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=54.2
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhh-------ccCCeEEEEEECCcChHHHHHHHhc---------CCCEEEeChHHHHHHH
Q 007280 225 LALILAPTRELSSQIHVEAKKFS-------YQTGVKVVVAYGGAPINQQLRELER---------GVDILVATPGRLVDLL 288 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~-------~~~~i~~~~~~gg~~~~~~~~~l~~---------~~~IlV~Tpg~L~~~l 288 (609)
.+||.+|++.-+..+++.+.+.. ...++.+..++++.+..++...+.. ...||||| +.+
T Consensus 305 ~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ia 379 (773)
T 2xau_A 305 DILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----NIA 379 (773)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----THH
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----cHH
Confidence 49999999999999988887532 2357889999999987776555432 35899999 455
Q ss_pred HcccccccceEEEEe
Q 007280 289 ERARVSLQMIRYLAL 303 (609)
Q Consensus 289 ~~~~~~l~~i~~lVl 303 (609)
+.+ +++..+.+||-
T Consensus 380 e~G-idIp~v~~VId 393 (773)
T 2xau_A 380 ETS-LTIDGIVYVVD 393 (773)
T ss_dssp HHT-CCCTTEEEEEE
T ss_pred HhC-cCcCCeEEEEe
Confidence 443 56788887774
No 258
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=73.06 E-value=2.5 Score=47.74 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHhhHhCCCC--------ceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHH
Q 007280 173 RHAIPISIGGRD--------LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (609)
Q Consensus 173 ~~~i~~i~~~~d--------~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~ 244 (609)
..++.....+.. +++++|||+|||. +.-+++..+..... .+|.+...++.......
T Consensus 504 ~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~--lA~ala~~l~~~~~------------~~i~i~~s~~~~~~~~~-- 567 (758)
T 3pxi_A 504 AKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE--LARALAESIFGDEE------------SMIRIDMSEYMEKHSTS-- 567 (758)
T ss_dssp HHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHH--HHHHHHHHHHSCTT------------CEEEEEGGGGCSSCCCC--
T ss_pred HHHHHHHHcccCCCCCCceEEEEECCCCCCHHH--HHHHHHHHhcCCCc------------ceEEEechhcccccccc--
Q ss_pred HhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchhhhhcCCHHHHHHHHHH
Q 007280 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (609)
Q Consensus 245 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~~l~~gf~~~i~~i~~~ 324 (609)
.+.|...+...... +|+|||+|.+ .......+..++..
T Consensus 568 ------------------------------------~~~l~~~~~~~~~~-----vl~lDEi~~~-~~~~~~~Ll~~le~ 605 (758)
T 3pxi_A 568 ------------------------------------GGQLTEKVRRKPYS-----VVLLDAIEKA-HPDVFNILLQVLED 605 (758)
T ss_dssp ---------------------------------------CHHHHHHCSSS-----EEEEECGGGS-CHHHHHHHHHHHHH
T ss_pred ------------------------------------cchhhHHHHhCCCe-----EEEEeCcccc-CHHHHHHHHHHhcc
Q ss_pred -----------cCCCCCCCceEEEEE
Q 007280 325 -----------MDMPPPGMRQTMLFS 339 (609)
Q Consensus 325 -----------l~~~~~~~~q~il~S 339 (609)
. ..+..+|+.|
T Consensus 606 g~~~~~~g~~~~----~~~~~iI~tt 627 (758)
T 3pxi_A 606 GRLTDSKGRTVD----FRNTILIMTS 627 (758)
T ss_dssp SBCC-----CCB----CTTCEEEEEE
T ss_pred CeEEcCCCCEec----cCCeEEEEeC
No 259
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=71.13 E-value=4.1 Score=37.90 Aligned_cols=37 Identities=22% Similarity=0.060 Sum_probs=27.8
Q ss_pred CHHHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHH
Q 007280 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGI 207 (609)
Q Consensus 169 t~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l 207 (609)
+.-|..++..+..+.-+.+.+|.|||||+ ++-++..+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKST--Ll~~l~Gl 45 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTY--LAMAKAVQ 45 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTH--HHHHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 44567778777788888899999999998 34444444
No 260
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=70.89 E-value=3.2 Score=37.02 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=14.8
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
.+.-+.++++.|||||+.
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 455578999999999983
No 261
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=70.59 E-value=10 Score=42.96 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=15.1
Q ss_pred CCCCceeeccCCCCchH
Q 007280 181 GGRDLMACAQTGSGKTA 197 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~ 197 (609)
.++.+++++|+|+|||+
T Consensus 237 ~~~~vLL~Gp~GtGKTt 253 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTL 253 (806)
T ss_dssp CCCEEEECSCTTSSHHH
T ss_pred CCCeEEEECcCCCCHHH
Confidence 45679999999999998
No 262
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=70.27 E-value=9.1 Score=38.61 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=14.5
Q ss_pred cceEEEEeccchhhhhc
Q 007280 296 QMIRYLALDEADRMLDM 312 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~ 312 (609)
.+.++|||||.-.+++.
T Consensus 230 ~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp SCEEEEEEETSSTTHHH
T ss_pred CCCCEEEEeCchHhhhh
Confidence 57899999999988765
No 263
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=70.02 E-value=15 Score=35.20 Aligned_cols=71 Identities=20% Similarity=0.102 Sum_probs=50.4
Q ss_pred CceEEEEecchhhHHHHHHHHHhC----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-----ccc--cCCCCCC
Q 007280 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-----VAA--RGLDIPH 472 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-----v~~--~GlDip~ 472 (609)
..++||.++++.-+..+++.+... +..+..++|+.........+ ..+ .+|+|+|. .+. ..+++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 567999999999999988887653 56677888887765544333 233 78999993 222 2467788
Q ss_pred ccEEEE
Q 007280 473 VAHVVN 478 (609)
Q Consensus 473 v~~VI~ 478 (609)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 264
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=69.77 E-value=5.1 Score=49.73 Aligned_cols=26 Identities=27% Similarity=0.097 Sum_probs=19.8
Q ss_pred HhCCCCceeeccCCCCchHHhHHHHH
Q 007280 179 SIGGRDLMACAQTGSGKTAAFCFPII 204 (609)
Q Consensus 179 i~~~~d~ii~a~TGsGKT~a~llpil 204 (609)
+..++.+++++++|+|||..++..+.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34678899999999999985444333
No 265
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=69.48 E-value=1.8 Score=40.11 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=27.5
Q ss_pred eEEEEeccchhhhhcC-CHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 298 IRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 298 i~~lVlDEah~~l~~g-f~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
-.+|||||||.++... .......++..+........++|+++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 4689999999985321 1111124556665555556788888877
No 266
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=69.48 E-value=1.8 Score=43.29 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.4
Q ss_pred CCCCceeeccCCCCchHHh
Q 007280 181 GGRDLMACAQTGSGKTAAF 199 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~ 199 (609)
.++.+++.+++|+|||..+
T Consensus 122 ~gsviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp ESEEEEEECSCSSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4556789999999999843
No 267
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=68.18 E-value=13 Score=34.12 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=44.0
Q ss_pred CceEEEEecchhhHHHHHHHHHhC----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-cc-----ccCCCCCCc
Q 007280 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA-----ARGLDIPHV 473 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~-----~~GlDip~v 473 (609)
..++||.++++.-+..+.+.+... ++.+..++|+.+..+.... +. ..+|+|+|. .+ ...+++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 567999999999998888877653 6778888988765544332 22 278999994 21 234566777
Q ss_pred cEEEE
Q 007280 474 AHVVN 478 (609)
Q Consensus 474 ~~VI~ 478 (609)
.+||.
T Consensus 157 ~~iVi 161 (224)
T 1qde_A 157 KMFIL 161 (224)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77774
No 268
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=68.10 E-value=5.7 Score=39.56 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=24.7
Q ss_pred CceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHH
Q 007280 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTREL 235 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 235 (609)
-+++.++.|+|||... +.++....+... +-.++++..--.+
T Consensus 30 iteI~G~pGsGKTtL~-Lq~~~~~~~~g~----------g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFG-LTMVSSYMRQYP----------DAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHH-HHHHHHHHHHCT----------TCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHhcCC----------CceEEEEeccchh
Confidence 4789999999999853 334444433210 0127787765444
No 269
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=67.98 E-value=14 Score=43.78 Aligned_cols=88 Identities=17% Similarity=0.089 Sum_probs=46.9
Q ss_pred eeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHH
Q 007280 186 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQ 265 (609)
Q Consensus 186 ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~ 265 (609)
+|.|..|||||.+.+- -+.+++...... ..+|+|+|...- -+..+.+.+. .+..
T Consensus 5 lV~agAGSGKT~~l~~-ri~~ll~~~~~~---------~~il~lVP~q~T-Ft~~~rl~~~---l~~~------------ 58 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIIN-SIQDELRRAPFG---------KPIIFLVPDQMT-FLMEYELAKT---PDMG------------ 58 (1166)
T ss_dssp EEEECTTSSHHHHHHH-HHHHHHHHCTTS---------SCEEEECCGGGH-HHHHHHHTCC---SSCS------------
T ss_pred EEEeCCCCChHHHHHH-HHHHHHHhCCCC---------CcEEEEecCccc-HHHHHHHHHh---hhhc------------
Confidence 6889999999996444 344444442211 239999998642 2232222222 1110
Q ss_pred HHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEEeccchh
Q 007280 266 QLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR 308 (609)
Q Consensus 266 ~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah~ 308 (609)
.-..|-|.|..+|...+.+..- .....|+|+.+.
T Consensus 59 ------~~~~~~V~TFhsla~~il~~~g---~~~~~ild~~~~ 92 (1166)
T 3u4q_B 59 ------GMIRAQVFSFSRLAWRVLQHTG---GMSRPFLTSTGV 92 (1166)
T ss_dssp ------EESSEEEECHHHHHHHHHHHHS---CTTSCEECHHHH
T ss_pred ------ceeeeEEecHHHHHHHHHHHcC---CCcccCcCHHHH
Confidence 0136888898887654433211 112346677664
No 270
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=67.98 E-value=5.2 Score=41.34 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=14.3
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
+.-++|+++.|+|||..
T Consensus 178 Gei~~I~G~sGsGKTTL 194 (400)
T 3lda_A 178 GSITELFGEFRTGKSQL 194 (400)
T ss_dssp TSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCCCChHHH
Confidence 45578999999999984
No 271
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=67.73 E-value=19 Score=37.26 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=13.4
Q ss_pred CCceeeccCCCCchHHh
Q 007280 183 RDLMACAQTGSGKTAAF 199 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~ 199 (609)
+-++++++.|+|||+..
T Consensus 99 ~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34667899999999843
No 272
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=67.34 E-value=6.9 Score=40.63 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.7
Q ss_pred CCCceeeccCCCCchH
Q 007280 182 GRDLMACAQTGSGKTA 197 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~ 197 (609)
+.-+++++|||||||+
T Consensus 167 ggii~I~GpnGSGKTT 182 (418)
T 1p9r_A 167 HGIILVTGPTGSGKST 182 (418)
T ss_dssp SEEEEEECSTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 4457899999999998
No 273
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=67.20 E-value=21 Score=37.13 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=28.0
Q ss_pred cceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEeeccHHHHHHHHHh
Q 007280 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF 353 (609)
Q Consensus 296 ~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~~~~~~l~~~~ 353 (609)
..+++||+|.+-++. ....+..-+..+.....++.-++.+.|+...+....+..|
T Consensus 179 ~~~D~vIIDT~G~~~---~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~ 233 (432)
T 2v3c_C 179 KKADVLIIDTAGRHK---EEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAF 233 (432)
T ss_dssp SSCSEEEEECCCSCS---SHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred hCCCEEEEcCCCCcc---ccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHH
Confidence 567899999997642 1222222222232222334445666777655444444444
No 274
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=66.71 E-value=27 Score=32.76 Aligned_cols=71 Identities=13% Similarity=0.047 Sum_probs=49.1
Q ss_pred CceEEEEecchhhHHHHHHHHHhC----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-cc-----ccCCCCCCc
Q 007280 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA-----ARGLDIPHV 473 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~-----~~GlDip~v 473 (609)
..++||.++++.-+..+.+.+... ++.+..++|+.+..+....+ ....+|+|+|. .+ ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 357999999999998888777543 56777888887655443322 24678999993 22 123567778
Q ss_pred cEEEE
Q 007280 474 AHVVN 478 (609)
Q Consensus 474 ~~VI~ 478 (609)
.+||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87774
No 275
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=66.57 E-value=25 Score=37.46 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=21.5
Q ss_pred ccceEEEEeccchhhhhcC-----CHHHHHHHHHHc
Q 007280 295 LQMIRYLALDEADRMLDMG-----FEPQIRKIVQQM 325 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~g-----f~~~i~~i~~~l 325 (609)
..+.++|||| -=.-++.. ....+..++..+
T Consensus 369 ~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l 403 (525)
T 1tf7_A 369 DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYA 403 (525)
T ss_dssp TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHH
T ss_pred hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHH
Confidence 4567899999 66667776 666676776666
No 276
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=66.08 E-value=5.6 Score=40.67 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=44.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh---c-CCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~---~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
+||.|+++..+..+++.+.+. ++.+..++++.+..++...+. . ..+|||||. .+.. .+++..+++|
T Consensus 283 ~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidip~v~~V 352 (414)
T 3eiq_A 283 AVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LLAR-GIDVQQVSLV 352 (414)
T ss_dssp CEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SCC---CCGGGCSCE
T ss_pred EEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----cccc-CCCccCCCEE
Confidence 899999999999988777663 677888888877655444332 2 468999993 3322 3567778887
Q ss_pred Eecc
Q 007280 302 ALDE 305 (609)
Q Consensus 302 VlDE 305 (609)
|.-.
T Consensus 353 i~~~ 356 (414)
T 3eiq_A 353 INYD 356 (414)
T ss_dssp EESS
T ss_pred EEeC
Confidence 7533
No 277
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=65.93 E-value=5.2 Score=42.76 Aligned_cols=30 Identities=17% Similarity=0.017 Sum_probs=21.8
Q ss_pred CCHHHHHHHhh-HhCCCCceeeccCCCCchH
Q 007280 168 PTPVQRHAIPI-SIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 168 pt~iQ~~~i~~-i~~~~d~ii~a~TGsGKT~ 197 (609)
+++.+..-+.. +..+..++++++||||||+
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTT 275 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTT 275 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHH
Confidence 34444444543 4467889999999999998
No 278
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=65.54 E-value=2 Score=46.01 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=18.0
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGI 207 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l 207 (609)
.+.-++|.+++|+|||.. ++-++..+
T Consensus 241 ~G~l~li~G~pG~GKT~l-al~~a~~~ 266 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTF-VRQQALQW 266 (503)
T ss_dssp TTCEEEEEESSCHHHHHH-HHHHHHHH
T ss_pred CCeEEEEeecCCCCchHH-HHHHHHHH
Confidence 455688999999999984 33343333
No 279
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=64.87 E-value=14 Score=34.01 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=47.6
Q ss_pred CceEEEEecchhhHHHHHHHHHhC--------CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-----cccc-CCC
Q 007280 404 QALTLVFVETKKGADALEHWLYMN--------GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-----VAAR-GLD 469 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~--------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-----v~~~-GlD 469 (609)
..++||.++++.-+..+++.+... ++.+..++|+.+..+.. +.+ ....+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 567999999999998888876543 56777888876543321 112 23578999993 2222 356
Q ss_pred CCCccEEEE
Q 007280 470 IPHVAHVVN 478 (609)
Q Consensus 470 ip~v~~VI~ 478 (609)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 677777774
No 280
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=64.47 E-value=75 Score=27.98 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcccc
Q 007280 385 RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVA 464 (609)
Q Consensus 385 ~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v~ 464 (609)
...+.+.+.. ... ...-+.|.+.+...+..+.+.|...++++..+..+.. .| ...|.|.|--.
T Consensus 47 ~~~i~~~I~~-~~~----g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~t~~~ 109 (174)
T 3dmn_A 47 VDQVVDQLAM-NDS----ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVVPSFL 109 (174)
T ss_dssp HHHHHHHHHH-HHH----TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEEEGGG
T ss_pred HHHHHHHHHH-hcc----CCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEEEccc
Confidence 3445555554 222 1445888899999999999999999998877765321 12 34699999999
Q ss_pred ccCCCCCCccEEEEcCC
Q 007280 465 ARGLDIPHVAHVVNFDL 481 (609)
Q Consensus 465 ~~GlDip~v~~VI~~d~ 481 (609)
+.|+.+ ++||.+++
T Consensus 110 ~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 110 AKGLEF---DAVIVWNA 123 (174)
T ss_dssp CTTCCE---EEEEEETC
T ss_pred cCCcCC---CEEEEecC
Confidence 999998 56666655
No 281
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=64.42 E-value=11 Score=40.01 Aligned_cols=93 Identities=14% Similarity=0.172 Sum_probs=54.9
Q ss_pred cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC----CCCcEEecCccCHHHHHHHHHhhhcCCCcE
Q 007280 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPI 457 (609)
Q Consensus 382 ~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~I 457 (609)
..|....+-.+.............++||.++++.-+..+.+.+... ++.+..+||+.+...+...+.. ..+|
T Consensus 33 sGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i 108 (556)
T 4a2p_A 33 SGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDI 108 (556)
T ss_dssp SCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCSE
T ss_pred ChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCCE
Confidence 3454433333333333322223667999999999888887777654 8999999999865554332221 3679
Q ss_pred EEEcc-cc----ccC-C-CCCCccEEEE
Q 007280 458 LVATD-VA----ARG-L-DIPHVAHVVN 478 (609)
Q Consensus 458 LVaT~-v~----~~G-l-Dip~v~~VI~ 478 (609)
+|+|. .+ ..+ + ++..+++||.
T Consensus 109 ~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 109 IVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp EEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred EEECHHHHHHHHHhCcccccccCCEEEE
Confidence 99993 22 222 4 6777888774
No 282
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=64.16 E-value=9.3 Score=40.66 Aligned_cols=93 Identities=10% Similarity=0.139 Sum_probs=57.0
Q ss_pred cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC----CCCcEEecCccCHHHHHHHHHhhhcCCCcE
Q 007280 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPI 457 (609)
Q Consensus 382 ~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~I 457 (609)
..|....+-.+.............++||+++++.-+..+.+.+... ++.+..+||+.+...+...+. ...+|
T Consensus 30 sGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i 105 (555)
T 3tbk_A 30 CGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDI 105 (555)
T ss_dssp SCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSE
T ss_pred ChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCE
Confidence 3454433333333333322223667999999998888777766554 899999999986554432222 13679
Q ss_pred EEEcc-ccc----cC-C-CCCCccEEEE
Q 007280 458 LVATD-VAA----RG-L-DIPHVAHVVN 478 (609)
Q Consensus 458 LVaT~-v~~----~G-l-Dip~v~~VI~ 478 (609)
+|+|. .+. .+ + ++.++++||.
T Consensus 106 ~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 106 IILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp EEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred EEECHHHHHHHHhcCcccccccCCEEEE
Confidence 99993 222 22 3 5667788774
No 283
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=64.13 E-value=5.4 Score=44.26 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=46.7
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhc-CCCEEEeChHHHHHHHHcccccccceEEEE
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLA 302 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lV 302 (609)
..+||+||+++-+..+++.+++. ++++..++|. ...+.+..+.. ..+||||| +.++.+ +++. +++||
T Consensus 411 ~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e~G-IDip-v~~VI 478 (673)
T 2wv9_A 411 GKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISEMG-ANFG-ASRVI 478 (673)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGGTT-CCCC-CSEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhhcc-eeeC-CcEEE
Confidence 35999999999999988887764 6788888884 33333334433 47999999 444443 4466 66665
No 284
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=63.91 E-value=3.4 Score=37.17 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.8
Q ss_pred CCCCceeeccCCCCchH
Q 007280 181 GGRDLMACAQTGSGKTA 197 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~ 197 (609)
.++-+++++|+|+|||.
T Consensus 4 ~g~~i~i~GpsGsGKST 20 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRH 20 (180)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45668899999999998
No 285
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=63.87 E-value=3.7 Score=41.66 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=19.2
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHH
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAA 198 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a 198 (609)
.|..+++|.+ +++-++||||||..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 4556677877 67899999999986
No 286
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=63.69 E-value=4.4 Score=38.26 Aligned_cols=73 Identities=25% Similarity=0.247 Sum_probs=48.4
Q ss_pred CceEEEEecchhhHHHHHHHHHhC----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-c----ccc---CCCCC
Q 007280 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-V----AAR---GLDIP 471 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v----~~~---GlDip 471 (609)
..++||.++++.-+..+++.+... ++.+..++++..... ..........+|+|+|. . +.. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 557999999999999998888764 566666776432211 12223356678999992 2 112 47778
Q ss_pred CccEEEEc
Q 007280 472 HVAHVVNF 479 (609)
Q Consensus 472 ~v~~VI~~ 479 (609)
++.+||.-
T Consensus 175 ~~~~lViD 182 (245)
T 3dkp_A 175 SVEWLVVD 182 (245)
T ss_dssp TCCEEEES
T ss_pred cCcEEEEe
Confidence 88887753
No 287
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=62.95 E-value=3.2 Score=39.56 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=28.0
Q ss_pred ccCccccCCCCHHHHHHHHHCC--CCCCCHHHHHHHhhHh--CCCCceeeccCCCCchH
Q 007280 143 AVNTFAEIDLGEALNLNIRRCK--YVKPTPVQRHAIPISI--GGRDLMACAQTGSGKTA 197 (609)
Q Consensus 143 ~~~~f~~~~l~~~l~~~i~~~~--~~~pt~iQ~~~i~~i~--~~~d~ii~a~TGsGKT~ 197 (609)
|..+|+++.-.+.....++..- |.. ..++..+- -.+.+++.+|+|+|||.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~g~ll~G~~G~GKTt 64 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTH 64 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCSEEEEECCTTSSHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCCCCHHH
Confidence 3456777766666655554321 111 11222111 12448999999999998
No 288
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=62.91 E-value=15 Score=41.50 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=55.7
Q ss_pred cchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC----CCCcEEecCccCHHHHHHHHHhhhcCCCcE
Q 007280 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPI 457 (609)
Q Consensus 382 ~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~I 457 (609)
..|....+-.+.............++||.|+++.-+..+.+.+... ++.+..+||+.+...+...+. ...+|
T Consensus 274 sGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~I 349 (797)
T 4a2q_A 274 SGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDI 349 (797)
T ss_dssp SCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSE
T ss_pred ChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCE
Confidence 4455443334433433322223678999999999888877777654 899999999986655433322 25789
Q ss_pred EEEcc-cc----ccC-C-CCCCccEEEE
Q 007280 458 LVATD-VA----ARG-L-DIPHVAHVVN 478 (609)
Q Consensus 458 LVaT~-v~----~~G-l-Dip~v~~VI~ 478 (609)
||+|. .+ ..+ + .+.++++||.
T Consensus 350 vv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 350 IVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp EEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred EEEchHHHHHHHHhccccccccCCEEEE
Confidence 99993 22 222 3 5667788774
No 289
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=62.67 E-value=8.4 Score=40.10 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=38.9
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhc-CCCEEEeC
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVAT 280 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IlV~T 280 (609)
.+||+||+++-+..+++.+++. ++++..++|.. ..+.+..+.. ..+|||||
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEEC
T ss_pred CEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEEC
Confidence 3999999999999999888875 67888888763 3333444433 57999999
No 290
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=62.41 E-value=12 Score=41.56 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=53.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChH---HHHHHHhc---CCCEEEeChHHHHHHHHcccccccceE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPIN---QQLRELER---GVDILVATPGRLVDLLERARVSLQMIR 299 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~---~~~~~l~~---~~~IlV~Tpg~L~~~l~~~~~~l~~i~ 299 (609)
.+|+++++.-+.++++.+.+. ++.+..++|+.+.. .+...+.. ..+||||| +.+.. .+++ .++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVAT-----di~e~-GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT-----DAIGM-GLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEEC-----GGGGS-SCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeC-----cHHHC-CcCc-Ccc
Confidence 467788888888888777763 67899999999876 44555553 37999999 44444 3567 899
Q ss_pred EEEeccchhh
Q 007280 300 YLALDEADRM 309 (609)
Q Consensus 300 ~lVlDEah~~ 309 (609)
+||.-...+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9998887653
No 291
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=62.33 E-value=10 Score=37.18 Aligned_cols=67 Identities=16% Similarity=0.305 Sum_probs=46.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHh---c-CCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~---~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
+||.+++++.+..+++.+. ++..++++.+..+....+. . ..+||||| +.+.. .+++..+++|
T Consensus 223 ~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~~-Gid~~~~~~V 288 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITT-----DVASR-GLDIPLVEKV 288 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----HHHHT-TCCCCCBSEE
T ss_pred EEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEc-----Ccccc-CCCccCCCEE
Confidence 9999999998887655443 3566788877655544332 2 57999999 44444 3567888888
Q ss_pred Eeccc
Q 007280 302 ALDEA 306 (609)
Q Consensus 302 VlDEa 306 (609)
|.-..
T Consensus 289 i~~~~ 293 (337)
T 2z0m_A 289 INFDA 293 (337)
T ss_dssp EESSC
T ss_pred EEecC
Confidence 86443
No 292
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=62.01 E-value=28 Score=36.90 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=13.2
Q ss_pred CceeeccCCCCchHHh
Q 007280 184 DLMACAQTGSGKTAAF 199 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~ 199 (609)
.+++++.+|+|||+.+
T Consensus 103 vI~ivG~~GvGKTTl~ 118 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC 118 (504)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999853
No 293
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=61.84 E-value=4.5 Score=40.90 Aligned_cols=25 Identities=40% Similarity=0.601 Sum_probs=20.2
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHHh
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a~ 199 (609)
.|..+++|.+ +++.++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5666778877 678999999999864
No 294
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=61.80 E-value=35 Score=35.86 Aligned_cols=73 Identities=18% Similarity=0.078 Sum_probs=48.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHH---Hh-cCCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---LE-RGVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~-~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
.+|++.+..-+..+++.+.+. +.++..++|+.+..+.... +. ...+|||||+..+-. .+++..+++|
T Consensus 350 ~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~v 420 (510)
T 2oca_A 350 AFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHHV 420 (510)
T ss_dssp EEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEEE
T ss_pred eEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcEE
Confidence 444555466666666666553 3478888888875544332 22 357899999665532 3578889999
Q ss_pred Eeccch
Q 007280 302 ALDEAD 307 (609)
Q Consensus 302 VlDEah 307 (609)
|+..+.
T Consensus 421 i~~~~~ 426 (510)
T 2oca_A 421 VLAHGV 426 (510)
T ss_dssp EESSCC
T ss_pred EEeCCC
Confidence 998877
No 295
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=61.61 E-value=4.5 Score=36.90 Aligned_cols=23 Identities=22% Similarity=0.602 Sum_probs=18.1
Q ss_pred CCceeeccCCCCchHHhHHHHHHHHHhh
Q 007280 183 RDLMACAQTGSGKTAAFCFPIISGIMRE 210 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~llpil~~l~~~ 210 (609)
|-+++++|.|+|||. ++..|++.
T Consensus 2 RpIVi~GPSG~GK~T-----l~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKST-----LLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHH-----HHHHHHHH
T ss_pred CEEEEECCCCCCHHH-----HHHHHHHh
Confidence 458999999999998 55666554
No 296
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=61.38 E-value=4.5 Score=40.47 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=18.7
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHH
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAA 198 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a 198 (609)
.|..+++|.+ +++.++||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceE
Confidence 3445567777 67899999999986
No 297
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=61.02 E-value=43 Score=33.42 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=51.0
Q ss_pred CceEEEEecchhhHHHHHHHHHh----CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-cc-----ccCCCCCCc
Q 007280 404 QALTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA-----ARGLDIPHV 473 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~-----~~GlDip~v 473 (609)
..++||.++++.-+..+.+.+.. .++.+..++|+....+....+. ..+|+|+|. .+ ...+++..+
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~ 163 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKI 163 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 56899999999999888887754 3678889999988776655554 467999993 22 224556677
Q ss_pred cEEEE
Q 007280 474 AHVVN 478 (609)
Q Consensus 474 ~~VI~ 478 (609)
++||.
T Consensus 164 ~~vIi 168 (394)
T 1fuu_A 164 KMFIL 168 (394)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77773
No 298
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=60.77 E-value=4.5 Score=40.95 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=20.4
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHHh
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a~ 199 (609)
.|..+++|.+ +++.++||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5667778877 678899999999864
No 299
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=60.29 E-value=4.3 Score=41.37 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=18.7
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHH
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAA 198 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a 198 (609)
.|..+++|.+ +++.++||||||..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 3445667776 67899999999985
No 300
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=60.28 E-value=4.5 Score=41.75 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=18.8
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHHh
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a~ 199 (609)
.|..+++|.+ +++.++||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 3445567766 678999999999863
No 301
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=60.23 E-value=4.3 Score=41.21 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=19.0
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHH
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAA 198 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a 198 (609)
.|..+++|.+ +++.++||||||..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 4456677877 67889999999986
No 302
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=60.19 E-value=4.7 Score=40.98 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=17.2
Q ss_pred hHhCCCCceeeccCCCCchH
Q 007280 178 ISIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 178 ~i~~~~d~ii~a~TGsGKT~ 197 (609)
.+..+..++++++||||||+
T Consensus 171 ~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHH
T ss_pred HHhcCCEEEEECCCCCCHHH
Confidence 34468889999999999998
No 303
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=60.06 E-value=7.2 Score=43.01 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=48.1
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHHHHHHcccccccceEEEE
Q 007280 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (609)
Q Consensus 224 ~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lV 302 (609)
..+||.++|++-+.++++.+++. ++++..++|+.+..+. .+.+.+||||| +.++++ +++. +++||
T Consensus 397 ~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerG-IDId-V~~VI 461 (666)
T 3o8b_A 397 GRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTG-YTGD-FDSVI 461 (666)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHH-CCCC-BSEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHcc-CCCC-CcEEE
Confidence 46999999999999998888763 7889999999875532 23456999999 455554 3354 77766
No 304
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=60.03 E-value=4.2 Score=40.99 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=18.0
Q ss_pred HhhHhCCCC--ceeeccCCCCchHH
Q 007280 176 IPISIGGRD--LMACAQTGSGKTAA 198 (609)
Q Consensus 176 i~~i~~~~d--~ii~a~TGsGKT~a 198 (609)
|..+++|.+ +++.++||||||..
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeE
Confidence 445567776 67899999999986
No 305
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=59.90 E-value=3.9 Score=39.64 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=27.1
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCCHHH-HHHHhhHh--CCCCceeeccCCCCchH
Q 007280 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQ-RHAIPISI--GGRDLMACAQTGSGKTA 197 (609)
Q Consensus 145 ~~f~~~~l~~~l~~~i~~~~~~~pt~iQ-~~~i~~i~--~~~d~ii~a~TGsGKT~ 197 (609)
.+|+++.-.+.+.+.++..-.. +. ..++..+- -.+.+++.+|+|+|||+
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~----~~~~~~l~~~~~~~~~gvll~Gp~GtGKTt 88 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEF----LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHH----HHCHHHHHHTTCCCCCEEEEECCTTSSHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHH----HHCHHHHHHcCCCCCCeEEEECCCcChHHH
Confidence 4577776666666555432110 00 11221111 12348999999999998
No 306
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=59.86 E-value=5.2 Score=36.61 Aligned_cols=17 Identities=29% Similarity=0.642 Sum_probs=13.9
Q ss_pred CCCCceeeccCCCCchH
Q 007280 181 GGRDLMACAQTGSGKTA 197 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~ 197 (609)
.++-+.+++|+|+|||.
T Consensus 3 ~g~~i~lvGpsGaGKST 19 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKST 19 (198)
T ss_dssp --CCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 35678899999999998
No 307
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=59.72 E-value=24 Score=37.00 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=17.6
Q ss_pred hHhCCCCceeeccCCCCchHH
Q 007280 178 ISIGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 178 ~i~~~~d~ii~a~TGsGKT~a 198 (609)
.+..++.+++.++.|+|||..
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL 167 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVL 167 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHH
T ss_pred hhccCCEEEEECCCCCCccHH
Confidence 345688899999999999983
No 308
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=59.58 E-value=4.5 Score=40.92 Aligned_cols=25 Identities=40% Similarity=0.518 Sum_probs=19.1
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHHh
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a~ 199 (609)
.|..+++|.+ +++.++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3445667776 678999999999863
No 309
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=59.41 E-value=5.1 Score=40.17 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=20.4
Q ss_pred HHHhhHhCCCC--ceeeccCCCCchHHh
Q 007280 174 HAIPISIGGRD--LMACAQTGSGKTAAF 199 (609)
Q Consensus 174 ~~i~~i~~~~d--~ii~a~TGsGKT~a~ 199 (609)
..|..+++|.+ +++.++||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35566778877 678999999999863
No 310
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=59.40 E-value=5 Score=40.90 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=18.6
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHH
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAA 198 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a 198 (609)
.|..+++|.+ +++.++||||||..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 3445667776 67899999999986
No 311
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=59.22 E-value=4.6 Score=40.95 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=19.4
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHHh
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a~ 199 (609)
.|..+++|.+ +++.++||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4455667877 678899999999863
No 312
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=59.21 E-value=5.3 Score=41.25 Aligned_cols=25 Identities=40% Similarity=0.601 Sum_probs=20.2
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHHh
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a~ 199 (609)
.|..+++|.+ +++.++||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5666778877 678899999999864
No 313
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=59.11 E-value=17 Score=39.37 Aligned_cols=42 Identities=31% Similarity=0.341 Sum_probs=30.0
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT 341 (609)
+.+-++++|||.-.-+|...+..+...+..+. .. .++++.+.
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~-~tvi~itH 537 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQ----KN-KTVLVIAH 537 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHc----CC-CEEEEEec
Confidence 45668999999999888877777877777762 22 35555544
No 314
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=59.08 E-value=5.2 Score=40.45 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=18.3
Q ss_pred HhhHhCCCC--ceeeccCCCCchHHh
Q 007280 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (609)
Q Consensus 176 i~~i~~~~d--~ii~a~TGsGKT~a~ 199 (609)
|..+++|.+ +++.++||||||...
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 344567776 678999999999863
No 315
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=58.94 E-value=50 Score=32.22 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=12.9
Q ss_pred CceeeccCCCCchHHh
Q 007280 184 DLMACAQTGSGKTAAF 199 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~ 199 (609)
-+++.+++|+|||...
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999843
No 316
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=58.88 E-value=4.3 Score=41.26 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=18.7
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHH
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAA 198 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a 198 (609)
.|..+++|.+ +++.++||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 4445667776 67899999999985
No 317
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=58.70 E-value=5.3 Score=40.32 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=19.0
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHHh
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a~ 199 (609)
.|..+++|.+ +++.++||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445567777 678899999999863
No 318
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=58.50 E-value=12 Score=41.04 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=46.2
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhc-CCCEEEeChHHHHHHHHcccccccceEEEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLA 302 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lV 302 (609)
.+||.|+|+.-+..+++.+++. ++++..+++. ...+.+..+.. ..+||||| +.+.++ +++. +++||
T Consensus 357 ~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaT-----dv~~rG-iDi~-v~~VI 423 (618)
T 2whx_A 357 KTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTT-----DISEMG-ANFR-AGRVI 423 (618)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT-THHHHTTHHHHSCCSEEEEC-----GGGGTT-CCCC-CSEEE
T ss_pred CEEEEECChhHHHHHHHHHHHc----CCcEEEEChH-HHHHHHHhhcCCCcEEEEEC-----cHHHcC-cccC-ceEEE
Confidence 4999999999999998888875 6778888874 33333444433 57999999 455544 4454 66664
No 319
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=58.37 E-value=7.7 Score=37.09 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=16.1
Q ss_pred hCCCCceeeccCCCCchHH
Q 007280 180 IGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a 198 (609)
.....+++.+++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3467899999999999983
No 320
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=58.35 E-value=6.3 Score=47.43 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=21.7
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHc
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l 325 (609)
+++-++||||||=--+|..-+..|.+.+..+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~ 1263 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRA 1263 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTT
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 4556789999998777766566666665554
No 321
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=58.33 E-value=5.4 Score=40.43 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=18.1
Q ss_pred HhhHhCCCC--ceeeccCCCCchHH
Q 007280 176 IPISIGGRD--LMACAQTGSGKTAA 198 (609)
Q Consensus 176 i~~i~~~~d--~ii~a~TGsGKT~a 198 (609)
|..+++|.+ +++.++||||||..
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceE
Confidence 345567776 67899999999986
No 322
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=58.19 E-value=2.6 Score=41.02 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=25.0
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCCCHHH-HHHHhhH--hCCCCceeeccCCCCchH
Q 007280 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQ-RHAIPIS--IGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 143 ~~~~f~~~~l~~~l~~~i~~~~~~~pt~iQ-~~~i~~i--~~~~d~ii~a~TGsGKT~ 197 (609)
|..+|++++-.+.+.+.|.+.- ..|+. .+++..+ .-.+.+++.+|.|+|||+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTt 59 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTL 59 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHH
Confidence 3457888876666666665421 11111 1122211 112449999999999998
No 323
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=58.17 E-value=5.5 Score=40.54 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=18.1
Q ss_pred HhhHhCCCC--ceeeccCCCCchHH
Q 007280 176 IPISIGGRD--LMACAQTGSGKTAA 198 (609)
Q Consensus 176 i~~i~~~~d--~ii~a~TGsGKT~a 198 (609)
|..+++|.+ +++.++||||||..
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceE
Confidence 345567776 67899999999986
No 324
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=58.03 E-value=5.5 Score=40.38 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=18.0
Q ss_pred HhhHhCCCC--ceeeccCCCCchHH
Q 007280 176 IPISIGGRD--LMACAQTGSGKTAA 198 (609)
Q Consensus 176 i~~i~~~~d--~ii~a~TGsGKT~a 198 (609)
|..+++|.+ +++.++||||||..
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceee
Confidence 345567776 67899999999986
No 325
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=58.01 E-value=7.3 Score=39.64 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=19.6
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHHh
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a~ 199 (609)
.|..+++|.+ +++.++||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556677877 678899999999863
No 326
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=57.87 E-value=4.9 Score=44.67 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=47.7
Q ss_pred eEEEEcCcHHHHHHHHHHHHHh--hccCCeEEEEEECC--------cChHHHHHHHh---c-CCCEEEeChHHHHHHHHc
Q 007280 225 LALILAPTRELSSQIHVEAKKF--SYQTGVKVVVAYGG--------APINQQLRELE---R-GVDILVATPGRLVDLLER 290 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~--~~~~~i~~~~~~gg--------~~~~~~~~~l~---~-~~~IlV~Tpg~L~~~l~~ 290 (609)
.+||.|+++..+..+++.+... ....++++..++|+ .+..++...+. . ..+||||| +.+.
T Consensus 402 ~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT-----~~~~- 475 (699)
T 4gl2_A 402 RGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIAT-----TVAE- 475 (699)
T ss_dssp CEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEE-----CSCC-
T ss_pred cEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEc-----cccc-
Confidence 3999999999999998888764 22236888888888 66655544443 2 47899999 3333
Q ss_pred ccccccceEEEEe
Q 007280 291 ARVSLQMIRYLAL 303 (609)
Q Consensus 291 ~~~~l~~i~~lVl 303 (609)
..+++..+++||.
T Consensus 476 ~GIDip~v~~VI~ 488 (699)
T 4gl2_A 476 EGLDIKECNIVIR 488 (699)
T ss_dssp TTSCCCSCCCCEE
T ss_pred cCCccccCCEEEE
Confidence 3456788888773
No 327
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=57.81 E-value=4.6 Score=41.29 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=19.1
Q ss_pred hCCCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 180 IGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
..+..++++++||||||+ ++-++..++
T Consensus 134 ~~g~~i~ivG~~GsGKTT--ll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKST--TIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHHhhc
Confidence 356678899999999998 333444444
No 328
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=57.77 E-value=4.4 Score=41.41 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=18.4
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHH
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAA 198 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a 198 (609)
.|..+++|.+ +++.++||||||..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 3445567776 67899999999985
No 329
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=57.73 E-value=5.3 Score=36.82 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=15.6
Q ss_pred hCCCCceeeccCCCCchH
Q 007280 180 IGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~ 197 (609)
+.++-+++++|+|+|||.
T Consensus 17 ~~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSH 34 (197)
T ss_dssp CSCCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECcCCCCHHH
Confidence 356778899999999998
No 330
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=57.53 E-value=6.8 Score=40.11 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=27.4
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTREL 235 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 235 (609)
.+.+++++++||+|||...-. ++..+.... ..++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~~~------------~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYMQG------------SRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHTTT------------CCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHHCC------------CEEEEEeCCcCH
Confidence 567899999999999984322 333332211 237888887664
No 331
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=57.35 E-value=8.6 Score=40.28 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=45.3
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhc-CCCEEEeChHHHHHHHHcccccccceEEEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLA 302 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lV 302 (609)
.+||.||++.-+.++++.+++. ++++..+++... ...+..+.. ..+||||| +.++.+ +++.. ++||
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT-----~v~~~G-iDip~-~~VI 256 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTT-----DISEMG-ANFRA-GRVI 256 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEEC-----GGGGSS-CCCCC-SEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEEC-----CHHHhC-cCCCC-CEEE
Confidence 3999999999999988888764 677777777544 233333333 47999999 455544 44555 5555
No 332
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=57.17 E-value=5.3 Score=40.92 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=19.0
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHHh
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a~ 199 (609)
.|..+++|.+ +++.++||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3445567776 678999999999864
No 333
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=56.71 E-value=2.3 Score=44.97 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=0.0
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHH---hc-CCCEEEeChHHHHHHHHcccccccceEE
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~ 300 (609)
.+||.|+++.-+..+++.+.+. ++.+..++|+.+..+....+ .. ..+||||| +.+.. .+++..+++
T Consensus 335 ~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T-----~~~~~-GlDip~v~~ 404 (479)
T 3fmp_B 335 QAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCAR-GIDVEQVSV 404 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEc-----ccccc-CCccccCCE
Confidence 4899999999999888877764 67788888887655443332 22 47899999 44433 355777877
Q ss_pred EE
Q 007280 301 LA 302 (609)
Q Consensus 301 lV 302 (609)
||
T Consensus 405 VI 406 (479)
T 3fmp_B 405 VI 406 (479)
T ss_dssp --
T ss_pred EE
Confidence 76
No 334
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=56.11 E-value=5.5 Score=41.68 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=19.2
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHHh
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a~ 199 (609)
.|..+++|.+ +++.++||||||...
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445567776 678999999999863
No 335
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=55.71 E-value=79 Score=25.42 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=39.7
Q ss_pred EEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCC
Q 007280 407 TLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGK 454 (609)
Q Consensus 407 ~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~ 454 (609)
.+||....+....+...++..+..++.++++.....|.+-++.|..--
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqg 52 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQG 52 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcC
Confidence 567777777778888888889999999999998888888888887543
No 336
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=54.99 E-value=5.7 Score=40.54 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=19.2
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHH
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAA 198 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a 198 (609)
.|..+++|.+ +++-++||||||..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 4556677776 67889999999986
No 337
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=54.81 E-value=13 Score=36.59 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=15.6
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
....+++.+++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 457799999999999983
No 338
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=54.62 E-value=4.6 Score=41.42 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=17.3
Q ss_pred hHhCCCC--ceeeccCCCCchHHh
Q 007280 178 ISIGGRD--LMACAQTGSGKTAAF 199 (609)
Q Consensus 178 ~i~~~~d--~ii~a~TGsGKT~a~ 199 (609)
.+++|.+ +++.++||||||...
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 4557776 678999999999863
No 339
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=54.47 E-value=6.7 Score=40.56 Aligned_cols=25 Identities=40% Similarity=0.563 Sum_probs=20.2
Q ss_pred HHHhhHhCCCC--ceeeccCCCCchHH
Q 007280 174 HAIPISIGGRD--LMACAQTGSGKTAA 198 (609)
Q Consensus 174 ~~i~~i~~~~d--~ii~a~TGsGKT~a 198 (609)
..|..+++|.+ +++.++||||||..
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeE
Confidence 35667778877 67889999999986
No 340
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=54.46 E-value=6.2 Score=36.36 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.5
Q ss_pred CCCCceeeccCCCCchH
Q 007280 181 GGRDLMACAQTGSGKTA 197 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~ 197 (609)
.++-+++++|+|+|||.
T Consensus 7 ~g~~i~l~GpsGsGKsT 23 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGT 23 (208)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECcCCCCHHH
Confidence 35568899999999998
No 341
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=54.39 E-value=9.6 Score=46.63 Aligned_cols=121 Identities=18% Similarity=0.326 Sum_probs=64.4
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCc
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~ 261 (609)
++-+.+.+|.|||||+.+ +++++...+.+. .|+++.+--+|.... ++++ ++++
T Consensus 1431 g~~iei~g~~~sGkttl~-~~~~a~~~~~g~------------~~~~i~~e~~~~~~~---~~~~----Gv~~------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLT-LQVIAAAQREGK------------TCAFIDAEHALDPIY---ARKL----GVDI------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHHTTC------------CEEEECTTSCCCHHH---HHHT----TCCG-------
T ss_pred CCEEEEEcCCCCCHHHHH-HHHHHHHHhcCC------------eEEEEecCCCCCHHH---HHHc----CCCH-------
Confidence 356889999999999953 344444333321 278887765554443 5554 3221
Q ss_pred ChHHHHHHHhcCCCEEEeChHHH---HHHHHcccccccceEEEEeccchhhhhc-------C----------CHHHHHHH
Q 007280 262 PINQQLRELERGVDILVATPGRL---VDLLERARVSLQMIRYLALDEADRMLDM-------G----------FEPQIRKI 321 (609)
Q Consensus 262 ~~~~~~~~l~~~~~IlV~Tpg~L---~~~l~~~~~~l~~i~~lVlDEah~~l~~-------g----------f~~~i~~i 321 (609)
-+++|+-|+.- +..++.. +.-..+++||+|.+--+... + +...++++
T Consensus 1484 ------------~~l~~~~p~~~e~~l~~~~~~-~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l 1550 (1706)
T 3cmw_A 1484 ------------DNLLCSQPDTGEQALEICDAL-ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 1550 (1706)
T ss_dssp ------------GGCEEECCSSHHHHHHHHHHH-HHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHH
T ss_pred ------------HHeEEeCCCcHHHHHHHHHHH-HHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHH
Confidence 13666666432 2222221 11234789999988865532 1 12234444
Q ss_pred HHHcCCCCCCCceEEEEEeeccHHH
Q 007280 322 VQQMDMPPPGMRQTMLFSATFPKEI 346 (609)
Q Consensus 322 ~~~l~~~~~~~~q~il~SAT~~~~~ 346 (609)
...+ ....-+++|...+...+
T Consensus 1551 ~~~~----~~~~~~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1551 AGNL----KQSNTLLIFINQIRMKI 1571 (1706)
T ss_dssp HHHH----HHHTCEEEEEECBC---
T ss_pred HHHH----HhCCcEEEEeecccccc
Confidence 4444 22234777777765443
No 342
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=54.35 E-value=7.2 Score=35.52 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=15.5
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
.++.+++++++|||||+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 456789999999999984
No 343
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=53.84 E-value=7 Score=36.39 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.2
Q ss_pred hCCCCceeeccCCCCchH
Q 007280 180 IGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~ 197 (609)
..++-+.+++|+|+|||.
T Consensus 21 ~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp -CCCCEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 456778899999999998
No 344
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=53.69 E-value=10 Score=36.27 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=14.7
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
.+.+++.+|+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 45699999999999984
No 345
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=53.21 E-value=6.9 Score=34.85 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.1
Q ss_pred hCCCCceeeccCCCCchHH
Q 007280 180 IGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a 198 (609)
...+.+++++++|||||..
T Consensus 9 ~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTTSSHHHH
T ss_pred ccCCeEEEEeCCCCCHHHH
Confidence 3567799999999999984
No 346
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=52.96 E-value=13 Score=36.93 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=21.0
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCCCcEE
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGFPATT 433 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ 433 (609)
..+++.|+- ...-+.+.+.|+..++.+..
T Consensus 226 ~~~v~a~aG-IgnP~~F~~~L~~~g~~i~~ 254 (315)
T 4ehx_A 226 EREVIAFSG-LGDNGQFRKVLKNLGIKVKE 254 (315)
T ss_dssp TCCEEEEES-STHHHHHHHHHHHHTCCEEE
T ss_pred hhhhhhhhh-cCCcHHHHHHHHHcCCceee
Confidence 445676654 56677888999998887753
No 347
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=52.90 E-value=11 Score=40.23 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=20.4
Q ss_pred HHHHhhHhCCCCceeeccCCCCchH
Q 007280 173 RHAIPISIGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 173 ~~~i~~i~~~~d~ii~a~TGsGKT~ 197 (609)
..++..+..+.++++.+|+|+|||.
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~ 56 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSL 56 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHH
Confidence 3444556678899999999999998
No 348
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=52.65 E-value=8 Score=39.10 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=15.5
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
....+++.+|+|+|||..
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 356799999999999984
No 349
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=51.99 E-value=14 Score=38.76 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=15.4
Q ss_pred CCCceeeccCCCCchHHh
Q 007280 182 GRDLMACAQTGSGKTAAF 199 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~ 199 (609)
.+.+++.+|+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 467999999999999843
No 350
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=51.91 E-value=7.3 Score=35.67 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.5
Q ss_pred hCCCCceeeccCCCCchH
Q 007280 180 IGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~ 197 (609)
..++-+++++++|||||.
T Consensus 10 ~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp CCCCCEEEECCTTSCHHH
T ss_pred ccCCEEEEECCCCCCHHH
Confidence 356778999999999998
No 351
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=51.81 E-value=6.3 Score=39.59 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=14.2
Q ss_pred CCceeeccCCCCchHHh
Q 007280 183 RDLMACAQTGSGKTAAF 199 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~ 199 (609)
+-++|++|||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999843
No 352
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=51.35 E-value=67 Score=37.11 Aligned_cols=73 Identities=11% Similarity=0.207 Sum_probs=53.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHH---HHHhcC---CCEEEeChHHHHHHHHcccccccceE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL---RELERG---VDILVATPGRLVDLLERARVSLQMIR 299 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~~---~~IlV~Tpg~L~~~l~~~~~~l~~i~ 299 (609)
+||.|+++.-+..+.+.+.. ..++++..++|+.+..+.. ..+..+ ++||||| +.+. ..+++..++
T Consensus 506 ~iVF~~~~~~~~~l~~~L~~---~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-----~v~~-~GlDl~~~~ 576 (968)
T 3dmq_A 506 VLVICAKAATALQLEQVLRE---REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-----EIGS-EGRNFQFAS 576 (968)
T ss_dssp CCEECSSTHHHHHHHHHHHT---TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-----CCTT-CSSCCTTCC
T ss_pred EEEEeCcHHHHHHHHHHHHH---HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-----chhh-cCCCcccCc
Confidence 89999999999888777764 2378899999997755443 334444 8999999 2222 346788899
Q ss_pred EEEeccch
Q 007280 300 YLALDEAD 307 (609)
Q Consensus 300 ~lVlDEah 307 (609)
+||+-+.+
T Consensus 577 ~VI~~d~p 584 (968)
T 3dmq_A 577 HMVMFDLP 584 (968)
T ss_dssp EEECSSCC
T ss_pred EEEEecCC
Confidence 99987665
No 353
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=50.93 E-value=8.1 Score=35.08 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.6
Q ss_pred CCCCceeeccCCCCchH
Q 007280 181 GGRDLMACAQTGSGKTA 197 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~ 197 (609)
.+.-+.+.+|+|||||+
T Consensus 6 ~g~ii~l~Gp~GsGKST 22 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTS 22 (205)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECcCCCCHHH
Confidence 45667899999999998
No 354
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=50.65 E-value=56 Score=36.17 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=50.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcc--------------------------------CCeEEEEEECCcChHHHHHHHh--
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQ--------------------------------TGVKVVVAYGGAPINQQLRELE-- 271 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~--------------------------------~~i~~~~~~gg~~~~~~~~~l~-- 271 (609)
+||.+|++.-+..+++.+.+.... ....+..++++.+..++.....
T Consensus 255 ~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f 334 (715)
T 2va8_A 255 VLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGF 334 (715)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHH
Confidence 999999999999998888764321 0123777899988766544433
Q ss_pred --cCCCEEEeChHHHHHHHHcccccccceEEEEec
Q 007280 272 --RGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (609)
Q Consensus 272 --~~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlD 304 (609)
....||||| +.+.. .+++..+.+||.+
T Consensus 335 ~~g~~~vlvaT-----~~l~~-Gidip~~~~VI~~ 363 (715)
T 2va8_A 335 RQRKIKVIVAT-----PTLAA-GVNLPARTVIIGD 363 (715)
T ss_dssp HTTCSCEEEEC-----GGGGG-SSCCCBSEEEECC
T ss_pred HcCCCeEEEEC-----hHHhc-ccCCCceEEEEeC
Confidence 257999999 34433 4567888886644
No 355
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=50.34 E-value=6 Score=35.10 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=14.2
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
++-+++++++|||||.+
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34578999999999983
No 356
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=50.25 E-value=7.9 Score=35.54 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=19.0
Q ss_pred hHhCCCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 178 ~i~~~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
.+..+.-+.+.+|.|||||+ ++-++..++
T Consensus 16 ~i~~Gei~~l~GpnGsGKST--Ll~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKST--VVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHH--HHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHH--HHHHHHhhC
Confidence 45567778899999999998 333444443
No 357
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=50.13 E-value=42 Score=32.72 Aligned_cols=70 Identities=10% Similarity=-0.046 Sum_probs=47.2
Q ss_pred CceEEEEecchhhHHHHHHHHHhC-----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEccc-c-----c-cCCCCC
Q 007280 404 QALTLVFVETKKGADALEHWLYMN-----GFPATTIHGDRTQQERELALRSFKSGKTPILVATDV-A-----A-RGLDIP 471 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~v-~-----~-~GlDip 471 (609)
..++||.++|+.-+..+++.+... ++.+..++++...... .....+|||+|.- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 447999999999999988877653 4566667665442211 1345679999942 1 1 357788
Q ss_pred CccEEEEcC
Q 007280 472 HVAHVVNFD 480 (609)
Q Consensus 472 ~v~~VI~~d 480 (609)
++.+||.-.
T Consensus 235 ~l~~lVlDE 243 (300)
T 3fmo_B 235 KIKVFVLDE 243 (300)
T ss_dssp GCSEEEETT
T ss_pred hceEEEEeC
Confidence 899888533
No 358
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=50.12 E-value=15 Score=33.38 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=33.5
Q ss_pred CceEEEEecchhhHHH-HHHHHHh---CCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc
Q 007280 404 QALTLVFVETKKGADA-LEHWLYM---NGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 462 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~-l~~~L~~---~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~ 462 (609)
..++||+|+++..++. +.+.+.. .++.+..++|+.....+...+. ....|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5679999999988777 5444433 3678888888754332211111 1467999993
No 359
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=49.94 E-value=98 Score=24.78 Aligned_cols=65 Identities=15% Similarity=0.061 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCcCCCCceEEEEec------chhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEE
Q 007280 388 LMDLLHAQVANGVHGKQALTLVFVE------TKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPIL 458 (609)
Q Consensus 388 l~~~l~~~~~~~~~~~~~k~lVF~~------t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~IL 458 (609)
+.+.+...+. ..+++||.. ....|..+.++|...+++...+.=......++.+.+.......+.|
T Consensus 7 ~~~~v~~~i~------~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i 77 (109)
T 3ipz_A 7 LKDTLEKLVN------SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQL 77 (109)
T ss_dssp HHHHHHHHHT------SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE
T ss_pred HHHHHHHHHc------cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 3445555442 556999987 4888999999999999887776544445555555443333334433
No 360
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=49.84 E-value=10 Score=37.50 Aligned_cols=15 Identities=40% Similarity=0.468 Sum_probs=13.0
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
-++|++|||||||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 367899999999984
No 361
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=49.80 E-value=7.1 Score=38.78 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=18.0
Q ss_pred hhHhCCCCceeeccCCCCchHH
Q 007280 177 PISIGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 177 ~~i~~~~d~ii~a~TGsGKT~a 198 (609)
..+..+.++++.+|+|+|||..
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHH
Confidence 3445678999999999999983
No 362
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=49.68 E-value=24 Score=34.15 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=15.1
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
...+++.+|+|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 56799999999999984
No 363
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=49.29 E-value=6.3 Score=35.25 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.6
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
.+.+++++++|||||..
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45688999999999984
No 364
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=48.82 E-value=8.4 Score=34.99 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=15.6
Q ss_pred hCCCCceeeccCCCCchHH
Q 007280 180 IGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a 198 (609)
..+.-+++++++|||||+.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3466788999999999983
No 365
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=48.59 E-value=9.9 Score=33.41 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=14.0
Q ss_pred CCCceeeccCCCCchH
Q 007280 182 GRDLMACAQTGSGKTA 197 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~ 197 (609)
+..++++++.|||||+
T Consensus 4 ~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 4 KRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 3568899999999998
No 366
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=48.36 E-value=9.6 Score=34.25 Aligned_cols=15 Identities=27% Similarity=0.656 Sum_probs=13.0
Q ss_pred CCceeeccCCCCchH
Q 007280 183 RDLMACAQTGSGKTA 197 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~ 197 (609)
+-+.+.+|+|+|||+
T Consensus 2 ~ii~l~GpsGaGKsT 16 (186)
T 3a00_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEESSSSSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 446789999999998
No 367
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=48.32 E-value=6.4 Score=34.46 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.9
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
-+++++++|||||+.
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999983
No 368
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=48.04 E-value=16 Score=29.60 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=32.2
Q ss_pred CCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccC
Q 007280 403 KQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~ 439 (609)
+..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3667999999988889999999999998889999864
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=47.94 E-value=15 Score=36.15 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=18.6
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHh
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMR 209 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~ 209 (609)
+.-+.+.+++|||||+ ++-++..++.
T Consensus 102 g~vi~lvG~nGsGKTT--ll~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTT--TIAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHH--HHHHHHHHHH
Confidence 4457789999999998 4445555554
No 370
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=47.89 E-value=7.8 Score=35.76 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.1
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
.++-+++.++||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456689999999999973
No 371
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=47.83 E-value=9.6 Score=34.99 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=17.7
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHh
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMR 209 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~ 209 (609)
+.-+.|.+++|||||+ ++-+|..++.
T Consensus 22 g~~v~I~G~sGsGKST--l~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKST--LSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHH--HHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHH--HHHHHHHHHh
Confidence 4456789999999998 3334444443
No 372
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=47.81 E-value=25 Score=38.70 Aligned_cols=71 Identities=11% Similarity=0.194 Sum_probs=48.7
Q ss_pred CceEEEEecchhhHHHHHHHHHhC----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-cc----ccC-C-CCCC
Q 007280 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA----ARG-L-DIPH 472 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~----~~G-l-Dip~ 472 (609)
..++||.++++.-+....+.+... ++.+..+||+.+...+...+. ...+|||+|. .+ ..+ + ++.+
T Consensus 61 ~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~ 136 (696)
T 2ykg_A 61 KGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSI 136 (696)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGG
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 368999999998888877777654 788999999875433222221 1478999993 32 233 3 5677
Q ss_pred ccEEEE
Q 007280 473 VAHVVN 478 (609)
Q Consensus 473 v~~VI~ 478 (609)
+++||.
T Consensus 137 ~~~vVi 142 (696)
T 2ykg_A 137 FTLMIF 142 (696)
T ss_dssp CSEEEE
T ss_pred ccEEEE
Confidence 788774
No 373
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=47.75 E-value=7.3 Score=38.71 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=13.0
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
-++|++|||+|||..
T Consensus 5 ~i~i~GptgsGKt~l 19 (322)
T 3exa_A 5 LVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCcCCHHHH
Confidence 467899999999984
No 374
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=47.67 E-value=19 Score=43.33 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=24.9
Q ss_pred ccceEEEEeccchhhhhcCCHHHHHHHHHHc
Q 007280 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (609)
Q Consensus 295 l~~i~~lVlDEah~~l~~gf~~~i~~i~~~l 325 (609)
+++-+++||||+=.-+|..-+..+.+.+..+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~ 600 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKA 600 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHH
Confidence 5667899999999888887777777777665
No 375
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=47.66 E-value=12 Score=34.06 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=25.8
Q ss_pred ccceEEEEeccchhh--hhcCCHHHHHHHHHHcCCCCCCCceEEEEEeecc
Q 007280 295 LQMIRYLALDEADRM--LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (609)
Q Consensus 295 l~~i~~lVlDEah~~--l~~gf~~~i~~i~~~l~~~~~~~~q~il~SAT~~ 343 (609)
+...++|||||+..| ++..|.+.+..++... ..+|+-+.|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~-------~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP-------GTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS-------SCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC-------CcEEEEEeecC
Confidence 456789999998877 4444555555555432 22454466753
No 376
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=47.60 E-value=6.7 Score=35.24 Aligned_cols=18 Identities=39% Similarity=0.754 Sum_probs=15.3
Q ss_pred hCCCCceeeccCCCCchH
Q 007280 180 IGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~ 197 (609)
..+.-+++++++|||||+
T Consensus 7 ~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CTTEEEEEEECTTSCHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 346668899999999998
No 377
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=47.22 E-value=1.1e+02 Score=24.63 Aligned_cols=56 Identities=11% Similarity=-0.020 Sum_probs=37.1
Q ss_pred CceEEEEe------cchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEE
Q 007280 404 QALTLVFV------ETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 459 (609)
Q Consensus 404 ~~k~lVF~------~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILV 459 (609)
..+++||. ++...|..+.++|...+++...+.=......++.+.+.......+.|+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if 76 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE
Confidence 55699998 577889999999999998877765444555555544433333444443
No 378
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=47.19 E-value=14 Score=36.36 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=18.5
Q ss_pred CCCceeeccCCCCchHHhHHHHHHHHHh
Q 007280 182 GRDLMACAQTGSGKTAAFCFPIISGIMR 209 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~llpil~~l~~ 209 (609)
+.-+.+.+++|+|||+ ++..+..++.
T Consensus 100 g~vi~lvG~nGsGKTT--ll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTT--SLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHH--HHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHH--HHHHHHHHHH
Confidence 3457789999999998 4445555554
No 379
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=47.11 E-value=38 Score=28.05 Aligned_cols=36 Identities=8% Similarity=0.144 Sum_probs=30.3
Q ss_pred ceEEEEe-cchhhHHHHHHHHHhCCCCcEEecCccCH
Q 007280 405 ALTLVFV-ETKKGADALEHWLYMNGFPATTIHGDRTQ 440 (609)
Q Consensus 405 ~k~lVF~-~t~~~~~~l~~~L~~~~~~~~~ihg~~~~ 440 (609)
.+++|+| .+-..+..++..|...|+++..+.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6799999 47677788899999999999999998753
No 380
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=47.11 E-value=8.9 Score=36.63 Aligned_cols=14 Identities=36% Similarity=0.333 Sum_probs=12.5
Q ss_pred ceeeccCCCCchHH
Q 007280 185 LMACAQTGSGKTAA 198 (609)
Q Consensus 185 ~ii~a~TGsGKT~a 198 (609)
++++++||||||..
T Consensus 4 i~I~G~~GSGKSTl 17 (253)
T 2ze6_A 4 HLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCcCHHHH
Confidence 67899999999984
No 381
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=46.97 E-value=9.4 Score=33.99 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=16.2
Q ss_pred CceeeccCCCCchHHhHHHHHHHHH
Q 007280 184 DLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
-.++.+++|||||.. +-++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 467899999999983 33444443
No 382
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=46.88 E-value=11 Score=33.98 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=16.1
Q ss_pred CceeeccCCCCchHHhHHHHHHHHH
Q 007280 184 DLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
.+.+.+|.|+|||+ ++-++..++
T Consensus 2 ~i~l~G~nGsGKTT--Ll~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTT--LVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHH--HHHHHHHHH
T ss_pred EEEEECCCCCCHHH--HHHHHHHHh
Confidence 36789999999998 333444443
No 383
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=46.57 E-value=9.2 Score=38.77 Aligned_cols=18 Identities=50% Similarity=0.540 Sum_probs=15.1
Q ss_pred CCCC--ceeeccCCCCchHH
Q 007280 181 GGRD--LMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d--~ii~a~TGsGKT~a 198 (609)
.+.+ +++.++||||||..
T Consensus 82 ~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHH
T ss_pred CCceeEEEeeCCCCCCCCEE
Confidence 3666 68999999999986
No 384
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=46.48 E-value=16 Score=29.09 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=31.7
Q ss_pred CCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccC
Q 007280 403 KQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~ 439 (609)
+..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3677999999988889999999999998888888753
No 385
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=46.28 E-value=9.8 Score=33.94 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.4
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
+.-+++++++|||||+.
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999983
No 386
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=46.11 E-value=12 Score=39.80 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=19.1
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
.+.+++|.+.||||||.+ +-.++..++
T Consensus 166 ~~pHlLIaG~TGSGKSt~-L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG-VNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 356899999999999984 333443333
No 387
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=45.99 E-value=17 Score=28.89 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=31.7
Q ss_pred CCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccC
Q 007280 403 KQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~ 439 (609)
+..+++|+|.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3678999999988899999999999998888888753
No 388
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=45.65 E-value=12 Score=34.03 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.1
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
.+.-++++++.|||||+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356788999999999983
No 389
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=45.44 E-value=12 Score=32.48 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=12.8
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
-.+|.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 367899999999984
No 390
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=45.33 E-value=30 Score=33.32 Aligned_cols=42 Identities=12% Similarity=0.046 Sum_probs=27.2
Q ss_pred HHHHHHHHCCCCCCCHHHHH-HHhhHhCCC-----CceeeccCCCCchHHh
Q 007280 155 ALNLNIRRCKYVKPTPVQRH-AIPISIGGR-----DLMACAQTGSGKTAAF 199 (609)
Q Consensus 155 ~l~~~i~~~~~~~pt~iQ~~-~i~~i~~~~-----d~ii~a~TGsGKT~a~ 199 (609)
.+.+-|+..+| .|++-. ++...++++ .+++.+|.|+|||+.+
T Consensus 74 ~i~~~l~~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 74 RIYKILELNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 55666666665 356532 234444433 4889999999999843
No 391
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=45.31 E-value=11 Score=37.32 Aligned_cols=26 Identities=12% Similarity=0.080 Sum_probs=19.8
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
.+.-+.|.+|+|||||+ ++-+|..++
T Consensus 125 ~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 56778899999999998 444555555
No 392
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=45.30 E-value=15 Score=36.33 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=12.4
Q ss_pred CceeeccCCCCchH
Q 007280 184 DLMACAQTGSGKTA 197 (609)
Q Consensus 184 d~ii~a~TGsGKT~ 197 (609)
-+++.++.|||||+
T Consensus 6 v~~i~G~~GaGKTT 19 (318)
T 1nij_A 6 VTLLTGFLGAGKTT 19 (318)
T ss_dssp EEEEEESSSSSCHH
T ss_pred EEEEEecCCCCHHH
Confidence 36789999999999
No 393
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=44.60 E-value=18 Score=29.09 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=30.9
Q ss_pred CCceEEEEecchhhHHHHHHHHHhCCCCcEEecCcc
Q 007280 403 KQALTLVFVETKKGADALEHWLYMNGFPATTIHGDR 438 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~ 438 (609)
+..+++|+|.+-..+...+..|...|+.+..+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 366799999998888889999999999988888875
No 394
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=44.18 E-value=10 Score=35.17 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.8
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
+.+++.+|.|+|||..
T Consensus 59 n~ili~GPPGtGKTt~ 74 (212)
T 1tue_A 59 NCLVFCGPANTGKSYF 74 (212)
T ss_dssp SEEEEESCGGGCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3588999999999984
No 395
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=44.08 E-value=8.7 Score=34.49 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=15.2
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
.+..+++++++|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356789999999999984
No 396
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=43.61 E-value=18 Score=40.34 Aligned_cols=25 Identities=44% Similarity=0.630 Sum_probs=19.8
Q ss_pred HHhhHhCCCC--ceeeccCCCCchHHh
Q 007280 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (609)
Q Consensus 175 ~i~~i~~~~d--~ii~a~TGsGKT~a~ 199 (609)
.|..+++|.+ +++.++||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5666778877 667899999999863
No 397
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=43.56 E-value=1.2e+02 Score=23.89 Aligned_cols=55 Identities=15% Similarity=0.024 Sum_probs=37.4
Q ss_pred ceEEEEe------cchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEE
Q 007280 405 ALTLVFV------ETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILV 459 (609)
Q Consensus 405 ~k~lVF~------~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILV 459 (609)
.+++||. ++...|..+..+|...++....+.=+.....++.+.+.+.....+.|+
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 3588887 566789999999998888877776555556566655555444445443
No 398
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=43.36 E-value=51 Score=37.19 Aligned_cols=51 Identities=20% Similarity=0.052 Sum_probs=36.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhc--CCCEEEeC
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER--GVDILVAT 280 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~--~~~IlV~T 280 (609)
+||.|.|++-+..+++.+++ .++.+.++++.....+....... ...|+|||
T Consensus 435 vLVft~s~~~se~Ls~~L~~----~gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIAT 487 (844)
T 1tf5_A 435 VLVGTVAVETSELISKLLKN----KGIPHQVLNAKNHEREAQIIEEAGQKGAVTIAT 487 (844)
T ss_dssp EEEEESCHHHHHHHHHHHHT----TTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHH----CCCCEEEeeCCccHHHHHHHHHcCCCCeEEEeC
Confidence 89999999999888777766 47888888888643333211111 35899999
No 399
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=43.35 E-value=1.8e+02 Score=25.92 Aligned_cols=67 Identities=9% Similarity=-0.144 Sum_probs=16.9
Q ss_pred hCCCCceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 180 IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
+.+-.+-+....|-|=|+.+.+|+...-.................++|||-........+...+.++
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~ 84 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM 84 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 4455677788889999998888874332211111111111123346888888777666665555553
No 400
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=43.24 E-value=22 Score=41.08 Aligned_cols=71 Identities=13% Similarity=0.197 Sum_probs=45.6
Q ss_pred CceEEEEecchhhHHHHHHHHHhC----CCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc-cc----ccC-C-CCCC
Q 007280 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQERELALRSFKSGKTPILVATD-VA----ARG-L-DIPH 472 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~----~~G-l-Dip~ 472 (609)
..++||.++++.-+..+.+.+... ++.+..+||+.+...+...+.. ..+|+|+|. .+ ..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~----~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHH----HCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhcc----CCCEEEecHHHHHHHHHcCccccccC
Confidence 667999999998888877766553 8999999999865543322221 367999992 22 222 3 5566
Q ss_pred ccEEEE
Q 007280 473 VAHVVN 478 (609)
Q Consensus 473 v~~VI~ 478 (609)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787774
No 401
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=43.18 E-value=12 Score=32.73 Aligned_cols=15 Identities=7% Similarity=-0.093 Sum_probs=13.0
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
-++++++.|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999984
No 402
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=42.95 E-value=12 Score=34.99 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=15.1
Q ss_pred hCCCCceeeccCCCCchH
Q 007280 180 IGGRDLMACAQTGSGKTA 197 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~ 197 (609)
..++-+++++|.|+|||+
T Consensus 14 ~~G~ii~l~GpsGsGKST 31 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSS 31 (219)
T ss_dssp -CCCEEEEECCTTSCHHH
T ss_pred CCCcEEEEECCCCCCHHH
Confidence 456678899999999999
No 403
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=42.75 E-value=10 Score=37.71 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=13.3
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
.++++++||||||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999984
No 404
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=42.75 E-value=29 Score=34.97 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=15.0
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
...+++.+|+|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 46799999999999984
No 405
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=42.74 E-value=1.4e+02 Score=24.67 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=16.8
Q ss_pred CceeeccCCCCchHHhHHHHHHHHHhh
Q 007280 184 DLMACAQTGSGKTAAFCFPIISGIMRE 210 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~l~~~ 210 (609)
.+++.+++|+|||. ++..+...
T Consensus 5 ~i~v~G~~~~GKss-----l~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSA-----LTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHH-----HHHHHHHS
T ss_pred EEEEECCCCCCHHH-----HHHHHHhC
Confidence 47899999999998 45555543
No 406
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=42.70 E-value=17 Score=34.74 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=16.6
Q ss_pred hCCCCceeeccCCCCchHH
Q 007280 180 IGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a 198 (609)
+.++.+++.+++|||||+.
T Consensus 46 l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HTTCCEEEECSTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3488999999999999984
No 407
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=42.64 E-value=22 Score=27.75 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=30.2
Q ss_pred ceEEEEecchhhHHHHHHHHHhCCCCcEEecCccC
Q 007280 405 ALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (609)
Q Consensus 405 ~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~ 439 (609)
.+++|+|.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999988888899999999999777888764
No 408
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=42.26 E-value=35 Score=35.39 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.6
Q ss_pred CceeeccCCCCchHHhH
Q 007280 184 DLMACAQTGSGKTAAFC 200 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~l 200 (609)
.++++++.|+|||+...
T Consensus 102 vI~ivG~~GvGKTT~a~ 118 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVG 118 (433)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46778999999998543
No 409
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=42.19 E-value=18 Score=36.57 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=17.9
Q ss_pred CCceeeccCCCCchHHhHHHHHHHHHh
Q 007280 183 RDLMACAQTGSGKTAAFCFPIISGIMR 209 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~llpil~~l~~ 209 (609)
.-+.+.+++|+|||+ ++..+..++.
T Consensus 158 ~vi~lvG~nGsGKTT--ll~~Lag~l~ 182 (359)
T 2og2_A 158 AVIMIVGVNGGGKTT--SLGKLAHRLK 182 (359)
T ss_dssp EEEEEECCTTSCHHH--HHHHHHHHHH
T ss_pred eEEEEEcCCCChHHH--HHHHHHhhcc
Confidence 346789999999999 4445555554
No 410
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=42.06 E-value=11 Score=36.78 Aligned_cols=16 Identities=25% Similarity=0.166 Sum_probs=13.8
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
+.+++.+|+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999983
No 411
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=42.05 E-value=17 Score=36.80 Aligned_cols=20 Identities=30% Similarity=0.224 Sum_probs=16.3
Q ss_pred CCCCceeeccCCCCchHHhH
Q 007280 181 GGRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~l 200 (609)
.++-+++.++.|+|||..++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal 81 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTL 81 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678899999999998543
No 412
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=41.81 E-value=21 Score=32.60 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=20.7
Q ss_pred CCHHHHHHHhhHhCCCCceeeccCCCCchHH
Q 007280 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 168 pt~iQ~~~i~~i~~~~d~ii~a~TGsGKT~a 198 (609)
.++.++... .+..+.-+++++++|||||+.
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHH
Confidence 345555542 334566788999999999984
No 413
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=41.81 E-value=97 Score=26.16 Aligned_cols=66 Identities=12% Similarity=0.031 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCcCCCCceEEEEec------chhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEE
Q 007280 387 HLMDLLHAQVANGVHGKQALTLVFVE------TKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPIL 458 (609)
Q Consensus 387 ~l~~~l~~~~~~~~~~~~~k~lVF~~------t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~IL 458 (609)
.+.+.+...+. ..+++||+. +...|..+..+|...+++...+.=+.....++++.+....-..++|
T Consensus 23 ~~~~~v~~~i~------~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~V 94 (135)
T 2wci_A 23 TTIEKIQRQIA------ENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQL 94 (135)
T ss_dssp HHHHHHHHHHH------HCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred HHHHHHHHHhc------cCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEE
Confidence 34444554443 335888876 6778999999999999888777655555555555544332233433
No 414
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=41.75 E-value=12 Score=32.86 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.9
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
-++++++.|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 367999999999983
No 415
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=41.75 E-value=13 Score=32.81 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.3
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
+..++++++.|||||+.
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45578999999999984
No 416
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=41.70 E-value=13 Score=33.84 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.0
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
.+.-+++.+++|||||+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456688999999999984
No 417
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=41.04 E-value=44 Score=37.08 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=47.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcc-----------------------------CCeEEEEEECCcChHHHHHHH---hc-
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQ-----------------------------TGVKVVVAYGGAPINQQLREL---ER- 272 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~-----------------------------~~i~~~~~~gg~~~~~~~~~l---~~- 272 (609)
+||.||++.-+..++..+.+.... ....+..++++.+..++.... ..
T Consensus 240 ~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 319 (720)
T 2zj8_A 240 ALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKG 319 (720)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT
T ss_pred EEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCC
Confidence 999999999999988887764221 012377788988876654433 22
Q ss_pred CCCEEEeChHHHHHHHHcccccccceEEEE
Q 007280 273 GVDILVATPGRLVDLLERARVSLQMIRYLA 302 (609)
Q Consensus 273 ~~~IlV~Tpg~L~~~l~~~~~~l~~i~~lV 302 (609)
..+||||| +.+.. .+++..+.+||
T Consensus 320 ~~~vlvaT-----~~l~~-Gvdip~~~~VI 343 (720)
T 2zj8_A 320 IIKAVVAT-----PTLSA-GINTPAFRVII 343 (720)
T ss_dssp SSCEEEEC-----STTGG-GCCCCBSEEEE
T ss_pred CCeEEEEC-----cHhhc-cCCCCceEEEE
Confidence 47999999 33333 35677777655
No 418
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=40.92 E-value=6.9 Score=41.69 Aligned_cols=69 Identities=14% Similarity=0.263 Sum_probs=42.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHH---HHHHhc-CCCEEEeChHHHHHHHHcccccccceEEE
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQ---LRELER-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-~~~IlV~Tpg~L~~~l~~~~~~l~~i~~l 301 (609)
+||.|+++.-+..+++.+.+ .++.+.+++++.+..+. +..+.. ..+|||||. .+.. .+++..+++|
T Consensus 360 ~LVF~~s~~~a~~l~~~L~~----~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~~-GiDip~v~~V 429 (508)
T 3fho_A 360 SIIFCKKKDTAEEIARRMTA----DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIAR-GIDVSQVNLV 429 (508)
T ss_dssp EEEBCSSTTTTTHHHHHHTT----TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTTCCEE
T ss_pred EEEEECCHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhhc-CCCccCCCEE
Confidence 99999999999888777665 36677788887654322 333333 478999993 4433 4568888888
Q ss_pred Eec
Q 007280 302 ALD 304 (609)
Q Consensus 302 VlD 304 (609)
|..
T Consensus 430 I~~ 432 (508)
T 3fho_A 430 VNY 432 (508)
T ss_dssp EC-
T ss_pred EEE
Confidence 853
No 419
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=40.45 E-value=55 Score=24.73 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=28.1
Q ss_pred CCceEEEEecchhhHHHHHHHHHhCCCCcEEecCcc
Q 007280 403 KQALTLVFVETKKGADALEHWLYMNGFPATTIHGDR 438 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~ 438 (609)
+..+++|+|.+-..+...+..|...|+..+.+-|++
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~ 75 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGL 75 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEET
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCH
Confidence 467899999998888899999999998644332664
No 420
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=40.32 E-value=12 Score=33.02 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=18.1
Q ss_pred CCCCceeeccCCCCchHHhHHHHHHHHH
Q 007280 181 GGRDLMACAQTGSGKTAAFCFPIISGIM 208 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a~llpil~~l~ 208 (609)
.+.-+.+.+|.|+|||+ ++-++..++
T Consensus 32 ~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 45557799999999998 344444443
No 421
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=40.26 E-value=15 Score=36.53 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=14.2
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
..+++.+|+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5689999999999983
No 422
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=39.98 E-value=36 Score=30.50 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=19.4
Q ss_pred CCEEEeChHHHHHHHHcccccccceEEEEeccch
Q 007280 274 VDILVATPGRLVDLLERARVSLQMIRYLALDEAD 307 (609)
Q Consensus 274 ~~IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEah 307 (609)
.+++-+.+..|.+.+..- ...+++||+|=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l---~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD---LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH---TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh---cCCCCEEEEECCC
Confidence 456666666666666542 2347889998543
No 423
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=39.52 E-value=33 Score=44.75 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHCCCCCCCHHHH-HHHh---hHhCCCCceeeccCCCCchHHhH
Q 007280 152 LGEALNLNIRRCKYVKPTPVQR-HAIP---ISIGGRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 152 l~~~l~~~i~~~~~~~pt~iQ~-~~i~---~i~~~~d~ii~a~TGsGKT~a~l 200 (609)
|.+.+.+.+.++++ .|++.+. ++|. .+.....+|+.+|||||||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 55677777788877 4555553 4443 33346679999999999999643
No 424
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=39.09 E-value=9.2 Score=34.22 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=16.3
Q ss_pred CceeeccCCCCchHHhHHHHHHHHHh
Q 007280 184 DLMACAQTGSGKTAAFCFPIISGIMR 209 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~l~~ 209 (609)
-+.+++++|||||+. +-++..++.
T Consensus 4 ~v~IvG~SGsGKSTL--~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL--ITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHH--HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhh
Confidence 356889999999983 334444443
No 425
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=39.06 E-value=28 Score=32.55 Aligned_cols=10 Identities=20% Similarity=0.182 Sum_probs=4.7
Q ss_pred CceEEEEEcC
Q 007280 501 SGLATAFFNE 510 (609)
Q Consensus 501 ~G~~~~f~~~ 510 (609)
+|.|++-|..
T Consensus 112 kGfaFV~f~~ 121 (229)
T 3q2s_C 112 KGFALVGVGS 121 (229)
T ss_dssp EEEEEEEESC
T ss_pred ceEEEEEECC
Confidence 3445554443
No 426
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=38.98 E-value=13 Score=37.30 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=13.6
Q ss_pred CceeeccCCCCchHHh
Q 007280 184 DLMACAQTGSGKTAAF 199 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~ 199 (609)
-++|+++||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4779999999999843
No 427
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=38.64 E-value=17 Score=33.12 Aligned_cols=15 Identities=33% Similarity=0.235 Sum_probs=12.8
Q ss_pred CCceeeccCCCCchH
Q 007280 183 RDLMACAQTGSGKTA 197 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~ 197 (609)
.-+.+.+++|||||+
T Consensus 7 ~~i~i~G~~GsGKST 21 (211)
T 3asz_A 7 FVIGIAGGTASGKTT 21 (211)
T ss_dssp EEEEEEESTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 346689999999998
No 428
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=44.54 E-value=6.6 Score=22.33 Aligned_cols=12 Identities=50% Similarity=0.839 Sum_probs=9.1
Q ss_pred Cccccccccccc
Q 007280 2 STSWADSVSASE 13 (609)
Q Consensus 2 ~~~~~~~~~~~~ 13 (609)
+++|+|||...+
T Consensus 8 r~nWs~RV~E~~ 19 (26)
T 2yka_B 8 KTSWADRVREAA 19 (26)
Confidence 579999986544
No 429
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=38.32 E-value=28 Score=27.88 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=30.5
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCCC-cEEecCccC
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRT 439 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~~-~~~ihg~~~ 439 (609)
..+++|+|.+-..+...+..|...|+. +..+.|++.
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 567999999988899999999999995 778888754
No 430
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=37.91 E-value=15 Score=35.74 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.5
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
.-+++++++|||||+.
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3478999999999983
No 431
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=37.57 E-value=44 Score=39.26 Aligned_cols=64 Identities=20% Similarity=0.072 Sum_probs=49.1
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEc-----cccccC-CCCCCccEEE
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVAT-----DVAARG-LDIPHVAHVV 477 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT-----~v~~~G-lDip~v~~VI 477 (609)
..++||.++++.-+...++.|....-.+..++|+.+ .+...+|||+| +.+.++ ..+.++.+||
T Consensus 227 g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVV 295 (1108)
T 3l9o_A 227 KQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVI 295 (1108)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEE
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEEE
Confidence 567999999999999999998876568888999876 34568899999 344444 3356777777
Q ss_pred E
Q 007280 478 N 478 (609)
Q Consensus 478 ~ 478 (609)
.
T Consensus 296 I 296 (1108)
T 3l9o_A 296 F 296 (1108)
T ss_dssp E
T ss_pred E
Confidence 3
No 432
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=37.52 E-value=1.3e+02 Score=32.84 Aligned_cols=73 Identities=8% Similarity=0.052 Sum_probs=47.2
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHH---HhcCC----CEEEeChHHHHHHHHcccccccc
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---LERGV----DILVATPGRLVDLLERARVSLQM 297 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~~~~----~IlV~Tpg~L~~~l~~~~~~l~~ 297 (609)
++||.+.++..+..+.+.+... ++.+..+.|+.+..+.... +..+. -+|++| . . -...+++..
T Consensus 418 k~lIFs~~~~~~~~l~~~l~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st-~----a-~g~Glnl~~ 487 (644)
T 1z3i_X 418 KVVLVSNYTQTLDLFEKLCRNR----RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS-K----A-GGCGLNLIG 487 (644)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH----TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG-G----G-SCTTCCCTT
T ss_pred EEEEEEccHHHHHHHHHHHHHC----CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEec-c----c-ccCCccccc
Confidence 4999999999888877666553 6788888998876554333 33332 255555 1 1 122456777
Q ss_pred eEEEEeccch
Q 007280 298 IRYLALDEAD 307 (609)
Q Consensus 298 i~~lVlDEah 307 (609)
+++||+=+.+
T Consensus 488 a~~Vi~~d~~ 497 (644)
T 1z3i_X 488 ANRLVMFDPD 497 (644)
T ss_dssp EEEEEECSCC
T ss_pred CCEEEEECCC
Confidence 8888765544
No 433
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=37.48 E-value=16 Score=32.72 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=12.4
Q ss_pred CceeeccCCCCchH
Q 007280 184 DLMACAQTGSGKTA 197 (609)
Q Consensus 184 d~ii~a~TGsGKT~ 197 (609)
-+++++++|+|||+
T Consensus 4 ii~l~G~~GaGKST 17 (189)
T 2bdt_A 4 LYIITGPAGVGKST 17 (189)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCcHHH
Confidence 36789999999998
No 434
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=37.42 E-value=30 Score=30.77 Aligned_cols=14 Identities=29% Similarity=0.195 Sum_probs=12.1
Q ss_pred CceeeccCCCCchH
Q 007280 184 DLMACAQTGSGKTA 197 (609)
Q Consensus 184 d~ii~a~TGsGKT~ 197 (609)
-+.+.++.|||||.
T Consensus 6 ~i~i~G~sGsGKTT 19 (169)
T 1xjc_A 6 VWQVVGYKHSGKTT 19 (169)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36788999999998
No 435
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=37.30 E-value=46 Score=27.96 Aligned_cols=37 Identities=8% Similarity=0.171 Sum_probs=31.2
Q ss_pred CCceEEEEecchhhHHHHHHHHHhCCCC-cEEecCccC
Q 007280 403 KQALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRT 439 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~~~~~-~~~ihg~~~ 439 (609)
+..+++|+|.+-..+...+..|...|+. +..+.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4678999999988888899999999995 778888764
No 436
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=37.14 E-value=17 Score=36.90 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=15.7
Q ss_pred CceeeccCCCCchHHhHHHHHHH
Q 007280 184 DLMACAQTGSGKTAAFCFPIISG 206 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~ 206 (609)
-.+++++||+|||.. +-++..
T Consensus 27 l~vi~G~NGaGKT~i--leAI~~ 47 (371)
T 3auy_A 27 IVAIIGENGSGKSSI--FEAVFF 47 (371)
T ss_dssp EEEEEECTTSSHHHH--HHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHH
Confidence 367999999999984 444444
No 437
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=37.11 E-value=14 Score=37.94 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.3
Q ss_pred CceeeccCCCCchHHh
Q 007280 184 DLMACAQTGSGKTAAF 199 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~ 199 (609)
-++|++|||+|||..+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3678999999999853
No 438
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=37.08 E-value=17 Score=36.83 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.5
Q ss_pred CceeeccCCCCchHHh
Q 007280 184 DLMACAQTGSGKTAAF 199 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~ 199 (609)
-++|++++|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999843
No 439
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=36.96 E-value=1.6e+02 Score=25.42 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=17.0
Q ss_pred CceeeccCCCCchHHhHHHHHHHHHhh
Q 007280 184 DLMACAQTGSGKTAAFCFPIISGIMRE 210 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~l~~~ 210 (609)
.+++++.+|+|||. ++..+...
T Consensus 23 ki~vvG~~~~GKSs-----li~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSA-----LTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHH-----HHHHHHHS
T ss_pred EEEEECcCCCCHHH-----HHHHHHcC
Confidence 58899999999998 55555543
No 440
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=36.95 E-value=27 Score=32.81 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=14.9
Q ss_pred CceeeccCCCCchHHhHH
Q 007280 184 DLMACAQTGSGKTAAFCF 201 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~ll 201 (609)
++++.++.|+|||..++-
T Consensus 8 ~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 478999999999996543
No 441
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=36.93 E-value=18 Score=32.65 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=11.9
Q ss_pred ceeeccCCCCchH
Q 007280 185 LMACAQTGSGKTA 197 (609)
Q Consensus 185 ~ii~a~TGsGKT~ 197 (609)
++|.+++|||||.
T Consensus 2 ilV~Gg~~SGKS~ 14 (180)
T 1c9k_A 2 ILVTGGARSGKSR 14 (180)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCCcHHH
Confidence 5789999999997
No 442
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=36.59 E-value=12 Score=32.65 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=14.2
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
+++++.+..|||||++
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5688999999999984
No 443
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=36.51 E-value=11 Score=35.08 Aligned_cols=19 Identities=32% Similarity=0.393 Sum_probs=11.6
Q ss_pred hCCCCceeeccCCCCchHH
Q 007280 180 IGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a 198 (609)
..+.-+.+.+|+|||||+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566688999999999983
No 444
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=36.40 E-value=41 Score=39.88 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=37.8
Q ss_pred CceeeccCCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHh
Q 007280 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~ 246 (609)
..+|.|.-|||||.+..--++..++..+... .......-..+|+|+=|+.-|..+.+++.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~-~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSA-AFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSS-SCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCccc-ccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4599999999999875444444444321000 0000011124999999999888887777654
No 445
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=36.38 E-value=1.7e+02 Score=30.82 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=19.5
Q ss_pred HHHhhH---hCCCCceeeccCCCCchHH
Q 007280 174 HAIPIS---IGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 174 ~~i~~i---~~~~d~ii~a~TGsGKT~a 198 (609)
++|..+ -.|+.+.|.++.|+|||..
T Consensus 151 kaID~l~PigrGQR~~Ifg~~g~GKT~l 178 (513)
T 3oaa_A 151 KAVDSMIPIGRGQRELIIGDRQTGKTAL 178 (513)
T ss_dssp HHHHHHSCCBTTCBCEEEESSSSSHHHH
T ss_pred eeeccccccccCCEEEeecCCCCCcchH
Confidence 344444 3689999999999999984
No 446
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=36.26 E-value=17 Score=32.31 Aligned_cols=15 Identities=20% Similarity=0.229 Sum_probs=12.9
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
-++++++.|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367999999999983
No 447
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=36.26 E-value=11 Score=34.49 Aligned_cols=21 Identities=24% Similarity=0.025 Sum_probs=15.9
Q ss_pred hHhCCCCceeeccCCCCchHH
Q 007280 178 ISIGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 178 ~i~~~~d~ii~a~TGsGKT~a 198 (609)
.+..+.-+.+.+++|||||+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHH
Confidence 334455677999999999983
No 448
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=36.26 E-value=17 Score=32.93 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=13.9
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
.-++++++.|||||+.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999984
No 449
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=36.13 E-value=19 Score=32.91 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=16.7
Q ss_pred CceeeccCCCCchHHhHHHHHHHHHh
Q 007280 184 DLMACAQTGSGKTAAFCFPIISGIMR 209 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~l~~ 209 (609)
-.+|.+++|+|||.. +-++..++.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 467899999999984 334444443
No 450
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=36.07 E-value=52 Score=36.37 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=48.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcc--------------------------CCeEEEEEECCcChHHHHHHHh----cCCC
Q 007280 226 ALILAPTRELSSQIHVEAKKFSYQ--------------------------TGVKVVVAYGGAPINQQLRELE----RGVD 275 (609)
Q Consensus 226 ~Lil~Ptr~La~Qi~~~~~~~~~~--------------------------~~i~~~~~~gg~~~~~~~~~l~----~~~~ 275 (609)
+||.||++.-+..+++.+.+.... ....+..++++.+..++..... ...+
T Consensus 245 ~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~ 324 (702)
T 2p6r_A 245 VLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIK 324 (702)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCC
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCe
Confidence 999999999999988877654211 0123566788888765544332 2579
Q ss_pred EEEeChHHHHHHHHcccccccceEEEEe
Q 007280 276 ILVATPGRLVDLLERARVSLQMIRYLAL 303 (609)
Q Consensus 276 IlV~Tpg~L~~~l~~~~~~l~~i~~lVl 303 (609)
|||||. .+.. .+++..+.+||.
T Consensus 325 vlvaT~-----~l~~-Gidip~~~~VI~ 346 (702)
T 2p6r_A 325 VVVATP-----TLAA-GVNLPARRVIVR 346 (702)
T ss_dssp EEEECS-----TTTS-SSCCCBSEEEEC
T ss_pred EEEECc-----HHhc-cCCCCceEEEEc
Confidence 999993 3333 456777877664
No 451
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=36.05 E-value=30 Score=44.48 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHH-HHH---hhHhCCCCceeeccCCCCchHHhH
Q 007280 152 LGEALNLNIRRCKYVKPTPVQR-HAI---PISIGGRDLMACAQTGSGKTAAFC 200 (609)
Q Consensus 152 l~~~l~~~i~~~~~~~pt~iQ~-~~i---~~i~~~~d~ii~a~TGsGKT~a~l 200 (609)
+.+.+.+.+.+.++ .+++.+. +++ ..+.....+|+.+|||||||.++-
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 45566677777776 4566553 333 233456779999999999999643
No 452
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=35.93 E-value=75 Score=34.11 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=48.4
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhcc----CCeEEEEEECCcCh--HHHHHHHhcC-CC---EEEeChHHHHHHHHccccc
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQ----TGVKVVVAYGGAPI--NQQLRELERG-VD---ILVATPGRLVDLLERARVS 294 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~----~~i~~~~~~gg~~~--~~~~~~l~~~-~~---IlV~Tpg~L~~~l~~~~~~ 294 (609)
++||.|+++.-|..+++.+.+.... ..-.+..++|..+. .+.+..+..+ .+ |+|+| +++.. .++
T Consensus 441 k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l~~-GiD 514 (590)
T 3h1t_A 441 KTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLLTT-GVD 514 (590)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STTTT-TCC
T ss_pred cEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----Chhhc-Ccc
Confidence 4999999999999999988775321 11224555665543 2223344432 22 77777 34333 367
Q ss_pred ccceEEEEeccch
Q 007280 295 LQMIRYLALDEAD 307 (609)
Q Consensus 295 l~~i~~lVlDEah 307 (609)
+..+++||++..-
T Consensus 515 ip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 515 APTCKNVVLARVV 527 (590)
T ss_dssp CTTEEEEEEESCC
T ss_pred chheeEEEEEecC
Confidence 8889999987653
No 453
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=35.87 E-value=21 Score=35.38 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.7
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
...+++.+++|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45699999999999983
No 454
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=35.86 E-value=29 Score=30.85 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=14.3
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
+.-+++++..|||||+.
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45578999999999984
No 455
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=35.72 E-value=44 Score=28.55 Aligned_cols=36 Identities=6% Similarity=0.004 Sum_probs=30.0
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCCC-cEEecCccC
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRT 439 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~~-~~~ihg~~~ 439 (609)
..++||||.+-..+...+..|...|+. +..+.|++.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 567999999988888899999999994 888888863
No 456
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=35.68 E-value=1.5e+02 Score=30.91 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.5
Q ss_pred HHHhhHh---CCCCceeeccCCCCchH
Q 007280 174 HAIPISI---GGRDLMACAQTGSGKTA 197 (609)
Q Consensus 174 ~~i~~i~---~~~d~ii~a~TGsGKT~ 197 (609)
++|..+. .|+.+.|.++.|+|||.
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~ 168 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTV 168 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHH
Confidence 4555444 68999999999999998
No 457
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=35.54 E-value=18 Score=32.27 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=13.7
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
.-++++++.|||||+.
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTL 21 (193)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578999999999984
No 458
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=35.39 E-value=47 Score=32.57 Aligned_cols=48 Identities=15% Similarity=0.271 Sum_probs=40.9
Q ss_pred CceEEEEecc-----------hhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhc
Q 007280 404 QALTLVFVET-----------KKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS 452 (609)
Q Consensus 404 ~~k~lVF~~t-----------~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~ 452 (609)
...+|||.+. ...++.|.+.|...||.|. ++-+++..+-.+++++|..
T Consensus 60 ~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 60 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred ccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 4568999887 5789999999999999875 5568999999999999964
No 459
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=35.37 E-value=73 Score=29.69 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=21.4
Q ss_pred ChHHHHHHHHcccccccceEEEEeccch
Q 007280 280 TPGRLVDLLERARVSLQMIRYLALDEAD 307 (609)
Q Consensus 280 Tpg~L~~~l~~~~~~l~~i~~lVlDEah 307 (609)
||..|++.|.+..++.+++.++-+||--
T Consensus 44 tp~~~y~~L~~~~idw~~v~~f~~DEr~ 71 (226)
T 3lwd_A 44 TPKPFFTSLAAKALPWARVDVTLADERW 71 (226)
T ss_dssp TTHHHHHHHHTSCSCGGGEEEEESEEES
T ss_pred CHHHHHHHHHhcCCCchhEEEEEeeecc
Confidence 4556666666667889999999999943
No 460
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=35.31 E-value=19 Score=35.01 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=14.0
Q ss_pred CceeeccCCCCchHHh
Q 007280 184 DLMACAQTGSGKTAAF 199 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~ 199 (609)
.+++.+|+|+|||..+
T Consensus 49 ~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEESCSSSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5899999999999843
No 461
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=35.22 E-value=15 Score=32.45 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=13.4
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
.++++++.|||||..
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 588999999999984
No 462
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=34.81 E-value=18 Score=32.67 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=14.5
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
+.-++++++.|||||+.
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45688999999999983
No 463
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=34.71 E-value=1.5e+02 Score=33.21 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=48.6
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHHHHhc------CC-CEEEeChHHHHHHHHcccccccc
Q 007280 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER------GV-DILVATPGRLVDLLERARVSLQM 297 (609)
Q Consensus 225 ~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~------~~-~IlV~Tpg~L~~~l~~~~~~l~~ 297 (609)
++||.+..+..+..+.+.+... ++++..+.|+.+..+....+.. .+ -+|++| +.. ...+++..
T Consensus 574 kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt-----~ag-g~GlNL~~ 643 (800)
T 3mwy_W 574 RVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST-----RAG-GLGINLMT 643 (800)
T ss_dssp CEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH-----HHH-TTTCCCTT
T ss_pred eEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec-----ccc-cCCCCccc
Confidence 3999999998888877776653 6788888999887766555543 12 245554 222 23466777
Q ss_pred eEEEEeccch
Q 007280 298 IRYLALDEAD 307 (609)
Q Consensus 298 i~~lVlDEah 307 (609)
.++||+=+.+
T Consensus 644 a~~VI~~D~~ 653 (800)
T 3mwy_W 644 ADTVVIFDSD 653 (800)
T ss_dssp CCEEEESSCC
T ss_pred cceEEEecCC
Confidence 8888765444
No 464
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=34.64 E-value=20 Score=32.87 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=12.9
Q ss_pred ceeeccCCCCchHHh
Q 007280 185 LMACAQTGSGKTAAF 199 (609)
Q Consensus 185 ~ii~a~TGsGKT~a~ 199 (609)
.+++++.|||||+.+
T Consensus 8 ~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 8 CLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 578999999999853
No 465
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=33.98 E-value=19 Score=39.24 Aligned_cols=14 Identities=14% Similarity=0.446 Sum_probs=13.5
Q ss_pred CceeeccCCCCchH
Q 007280 184 DLMACAQTGSGKTA 197 (609)
Q Consensus 184 d~ii~a~TGsGKT~ 197 (609)
++|+.+|+|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999997
No 466
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=33.96 E-value=15 Score=32.73 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=14.2
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
+..++++++.|||||+.
T Consensus 4 g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp EEEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44578999999999984
No 467
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=33.72 E-value=1.6e+02 Score=30.82 Aligned_cols=114 Identities=8% Similarity=-0.016 Sum_probs=70.9
Q ss_pred EEEEEeccchHHHHHHHHHHHHhcCcCCCCceEEEEecchhhHHHHHHHHHhC-CCCcEEe-------cCcc-----CHH
Q 007280 375 RVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-GFPATTI-------HGDR-----TQQ 441 (609)
Q Consensus 375 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~-~~~~~~i-------hg~~-----~~~ 441 (609)
.+.-+....|...+..++... +.++||.+++...|..+++.|... +-.+..+ |... ...
T Consensus 18 ~l~g~~gs~ka~~~a~l~~~~--------~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~ 89 (483)
T 3hjh_A 18 LLGELTGAACATLVAEIAERH--------AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIIS 89 (483)
T ss_dssp EEECCCTTHHHHHHHHHHHHS--------SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHH
T ss_pred EEeCCCchHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHH
Confidence 333444455554444444321 557999999999999999999864 2223222 1111 134
Q ss_pred HHHHHHHhhhcCCCcEEEEccccccC-CCCCC----ccEEEEcCCCCCHHHHHHHhhhcc
Q 007280 442 ERELALRSFKSGKTPILVATDVAARG-LDIPH----VAHVVNFDLPNDIDDYVHRIGRTG 496 (609)
Q Consensus 442 ~R~~~~~~F~~g~~~ILVaT~v~~~G-lDip~----v~~VI~~d~p~s~~~y~QriGRag 496 (609)
+|..++..+..++..|||+|--+..+ +.-+. ..+.+..+-..+.+++.++.=..|
T Consensus 90 ~Rl~~l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L~~~G 149 (483)
T 3hjh_A 90 SRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAG 149 (483)
T ss_dssp HHHHHHHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHHHHcC
Confidence 68888999988888899998433333 22222 355677777778888887764443
No 468
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=33.68 E-value=23 Score=31.56 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.1
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
...-++++++.|||||+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455688999999999984
No 469
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=33.67 E-value=26 Score=36.77 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.3
Q ss_pred CCCceeeccCCCCchHHh
Q 007280 182 GRDLMACAQTGSGKTAAF 199 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a~ 199 (609)
..++++.+|+|+|||..+
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 457999999999999843
No 470
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=33.51 E-value=2.2e+02 Score=24.25 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=16.9
Q ss_pred CceeeccCCCCchHHhHHHHHHHHHhh
Q 007280 184 DLMACAQTGSGKTAAFCFPIISGIMRE 210 (609)
Q Consensus 184 d~ii~a~TGsGKT~a~llpil~~l~~~ 210 (609)
.+++.+++|+|||. ++..+...
T Consensus 6 ki~v~G~~~~GKSs-----li~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSA-----LTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHH-----HHHHHHHS
T ss_pred EEEEECCCCCCHHH-----HHHHHHhC
Confidence 47899999999998 55555543
No 471
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=33.51 E-value=18 Score=32.23 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.6
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
.-+++++++|||||+.
T Consensus 4 ~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578999999999984
No 472
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=33.43 E-value=1.4e+02 Score=31.56 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=17.1
Q ss_pred hCCCCceeeccCCCCchHH
Q 007280 180 IGGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 180 ~~~~d~ii~a~TGsGKT~a 198 (609)
-.|+.+.|.++.|+|||..
T Consensus 160 grGQR~~I~g~~g~GKT~L 178 (510)
T 2ck3_A 160 GRGQRELIIGDRQTGKTSI 178 (510)
T ss_dssp BTTCBCEEEESTTSSHHHH
T ss_pred ccCCEEEEecCCCCCchHH
Confidence 4689999999999999985
No 473
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=33.24 E-value=1.4e+02 Score=23.60 Aligned_cols=47 Identities=13% Similarity=0.024 Sum_probs=33.4
Q ss_pred CceEEEEec------chhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhh
Q 007280 404 QALTLVFVE------TKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSF 450 (609)
Q Consensus 404 ~~k~lVF~~------t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F 450 (609)
..+++||.. +...|..+..+|...++....+.=+.....++++.+..
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 345788866 56689999999999998887776665555555555444
No 474
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=33.16 E-value=21 Score=33.26 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.5
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
...+++.+++|||||+.
T Consensus 16 ~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999984
No 475
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=33.10 E-value=35 Score=29.20 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=31.1
Q ss_pred CCceEEEEecch--hhHHHHHHHHHhCCCCcEEecCccC
Q 007280 403 KQALTLVFVETK--KGADALEHWLYMNGFPATTIHGDRT 439 (609)
Q Consensus 403 ~~~k~lVF~~t~--~~~~~l~~~L~~~~~~~~~ihg~~~ 439 (609)
+..+++|+|.+- ..+..++..|...|+++..+.|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 366799999987 5788889999999999888999864
No 476
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=32.96 E-value=26 Score=29.03 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=30.7
Q ss_pred CCceEEEEecchhh--HHHHHHHHHhCCCCcEEecCccC
Q 007280 403 KQALTLVFVETKKG--ADALEHWLYMNGFPATTIHGDRT 439 (609)
Q Consensus 403 ~~~k~lVF~~t~~~--~~~l~~~L~~~~~~~~~ihg~~~ 439 (609)
+..+++|+|.+-.. +..++..|...|+.+..+.|++.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 36679999998776 78899999999999878888764
No 477
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=32.96 E-value=21 Score=40.48 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.6
Q ss_pred CCCCceeeccCCCCchHH
Q 007280 181 GGRDLMACAQTGSGKTAA 198 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~a 198 (609)
.++.+++.+|+|+|||+.
T Consensus 510 ~~~~vLL~GppGtGKT~L 527 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCCCBCCTTSSHHHH
T ss_pred CCceeEEECCCCCCHHHH
Confidence 457799999999999983
No 478
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=32.89 E-value=80 Score=30.32 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=40.5
Q ss_pred CCceEEEEec---------------------chhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhc
Q 007280 403 KQALTLVFVE---------------------TKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKS 452 (609)
Q Consensus 403 ~~~k~lVF~~---------------------t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~ 452 (609)
+.+.+|||.+ +...++.|.+.|...||.+. ++-+++..+-.+++++|..
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 4567888877 44678999999999999875 5578999999999999965
No 479
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=32.83 E-value=1.1e+02 Score=29.20 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=56.2
Q ss_pred CCCCchHHhHHHHHHHHHhhhcccCCCCCccccceEEEEcCcHHHHHHHHHHHHHhhccCCeEEEEEECCcChHHHHH--
Q 007280 191 TGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLR-- 268 (609)
Q Consensus 191 TGsGKT~a~llpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~~~~-- 268 (609)
.-++|..+ ++-++..+.... -++||.+.++..+..+.+.+.+. .++.+..++|+.+..+...
T Consensus 93 ~~s~K~~~-L~~ll~~~~~~~------------~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i 156 (271)
T 1z5z_A 93 RRSGKMIR-TMEIIEEALDEG------------DKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDII 156 (271)
T ss_dssp TTCHHHHH-HHHHHHHHHHTT------------CCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHH
T ss_pred ccCHHHHH-HHHHHHHHHhCC------------CeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHH
Confidence 45788763 444555544321 12999999999988887777652 2567778888887554433
Q ss_pred -HHhcC--CC-EEEeChHHHHHHHHcccccccceEEEEeccc
Q 007280 269 -ELERG--VD-ILVATPGRLVDLLERARVSLQMIRYLALDEA 306 (609)
Q Consensus 269 -~l~~~--~~-IlV~Tpg~L~~~l~~~~~~l~~i~~lVlDEa 306 (609)
.+..+ +. +|++|- . . ...+++..+++||+=+.
T Consensus 157 ~~F~~~~~~~v~L~st~-~----~-g~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 157 SKFQNNPSVKFIVLSVK-A----G-GFGINLTSANRVIHFDR 192 (271)
T ss_dssp HHHHHCTTCCEEEEECC-T----T-CCCCCCTTCSEEEECSC
T ss_pred HHhcCCCCCCEEEEehh-h----h-cCCcCcccCCEEEEECC
Confidence 33333 45 555652 1 1 22356666777665433
No 480
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=32.68 E-value=22 Score=31.82 Aligned_cols=14 Identities=43% Similarity=0.470 Sum_probs=12.3
Q ss_pred CceeeccCCCCchH
Q 007280 184 DLMACAQTGSGKTA 197 (609)
Q Consensus 184 d~ii~a~TGsGKT~ 197 (609)
-++++++.|+|||.
T Consensus 8 ~i~i~G~sGsGKTT 21 (174)
T 1np6_A 8 LLAFAAWSGTGKTT 21 (174)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEEeCCCCCHHH
Confidence 46789999999998
No 481
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=32.65 E-value=21 Score=33.10 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.3
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
...+++++++|||||+.
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35688999999999983
No 482
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=32.64 E-value=56 Score=30.50 Aligned_cols=45 Identities=24% Similarity=0.220 Sum_probs=36.0
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCCC-cEEecCccCHHHHHHHHHhhhcCCCcEEEEc
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQQERELALRSFKSGKTPILVAT 461 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~~-~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT 461 (609)
..++||+++++..+..+.+.+...++. +..++++.. ...+|+|+|
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T 178 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVST 178 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEe
Confidence 456999999999999988888777777 778888654 256788888
No 483
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=32.61 E-value=51 Score=26.48 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=31.1
Q ss_pred CCceEEEEecchhhHHHHHHHHHhCCCCcEEecCccC
Q 007280 403 KQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~ 439 (609)
+..+++|+|.+-..+...+..|...|+....+.|++.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 3667999999988888999999999987677888864
No 484
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=32.59 E-value=22 Score=31.39 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.2
Q ss_pred CCCceeeccCCCCchHH
Q 007280 182 GRDLMACAQTGSGKTAA 198 (609)
Q Consensus 182 ~~d~ii~a~TGsGKT~a 198 (609)
+.-++++++.|||||++
T Consensus 5 g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45578999999999984
No 485
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=32.55 E-value=17 Score=31.68 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=13.6
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
+.++++++.|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3578999999999984
No 486
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=32.54 E-value=18 Score=32.80 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=17.8
Q ss_pred CCceeeccCCCCchHHhHHHHHHHHHh
Q 007280 183 RDLMACAQTGSGKTAAFCFPIISGIMR 209 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~llpil~~l~~ 209 (609)
.-+.+.++.|+|||+ ++-++..++.
T Consensus 2 ~~i~i~G~nG~GKTT--ll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTT--LIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHH--HHHHHHHHHH
T ss_pred CEEEEECCCCChHHH--HHHHHHhhcc
Confidence 457789999999998 4445555544
No 487
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=32.46 E-value=38 Score=30.65 Aligned_cols=15 Identities=33% Similarity=0.155 Sum_probs=12.8
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
-+.+.++.|||||+.
T Consensus 24 ~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTL 38 (201)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999984
No 488
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=32.42 E-value=32 Score=34.05 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=13.6
Q ss_pred CCceeeccCCCCchHHh
Q 007280 183 RDLMACAQTGSGKTAAF 199 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a~ 199 (609)
+-+++++++|+|||+..
T Consensus 106 ~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34678899999999843
No 489
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=32.27 E-value=51 Score=34.18 Aligned_cols=61 Identities=21% Similarity=0.198 Sum_probs=43.9
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCCC-cEEecCccCHHHHHHHHHhhhcCCCcEEEEc-cccccCCCC--CCccEEE
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQQERELALRSFKSGKTPILVAT-DVAARGLDI--PHVAHVV 477 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~~-~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT-~v~~~GlDi--p~v~~VI 477 (609)
..++||+|+++.-+..+.+.|...+.. +..+||+... ..+|+|+| +.+..-++. ..+.+||
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~~~l~~~~~~~~~~~~liI 197 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTYDSAYVNAEKLGNRFMLLI 197 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEHHHHHHTHHHHTTTCSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEcHHHHHHHHHhcCCCCEEE
Confidence 456999999999999999998887888 8899997652 46788888 333332211 2356666
No 490
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=32.26 E-value=2.8e+02 Score=24.88 Aligned_cols=125 Identities=10% Similarity=0.161 Sum_probs=77.1
Q ss_pred CceEEEEecchhhHHHHHHHHHhCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEc----cccccCCCCCCccEEEEc
Q 007280 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVAT----DVAARGLDIPHVAHVVNF 479 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT----~v~~~GlDip~v~~VI~~ 479 (609)
..+++++++..+..+.+.+.+.+....+..+.+++... ....+.+ ....+|+||- ..+..-+++| ||
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~--v~~a~~~-~~~~dVIISRGgta~~lr~~~~iP----VV-- 74 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRA--SKIAFGL-QDEVDAIISRGATSDYIKKSVSIP----SI-- 74 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHH--HHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC----EE--
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHH--HHHHHHh-cCCCeEEEECChHHHHHHHhCCCC----EE--
Confidence 45788888988888877776666666667777776433 3334445 5677899985 4455567776 33
Q ss_pred CCCCCHHHHHHHhhhcccCCCCceEEEEEcCCChhhHHHHHHHHHHh--------cccchHHHHHHHh
Q 007280 480 DLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSLARPLTELMQEA--------NQEVPAWLNRYAS 539 (609)
Q Consensus 480 d~p~s~~~y~QriGRagR~g~~G~~~~f~~~~~~~~~~~l~~~l~~~--------~q~vp~~l~~~a~ 539 (609)
+++.+.-++++.+=++-+.+. -.+++-| .+-..-++.+.+++... .+++.+-++++.+
T Consensus 75 ~I~~s~~Dil~al~~a~~~~~-kIavvg~-~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~ 140 (196)
T 2q5c_A 75 SIKVTRFDTMRAVYNAKRFGN-ELALIAY-KHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKT 140 (196)
T ss_dssp EECCCHHHHHHHHHHHGGGCS-EEEEEEE-SSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHH
T ss_pred EEcCCHhHHHHHHHHHHhhCC-cEEEEeC-cchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHH
Confidence 345568888888888866543 2333333 33344456666666532 2455555555544
No 491
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=32.26 E-value=1.4e+02 Score=34.83 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=26.6
Q ss_pred CeEEEEEECCcChHHHHHHHhcCCCEEEeChHHHH
Q 007280 251 GVKVVVAYGGAPINQQLRELERGVDILVATPGRLV 285 (609)
Q Consensus 251 ~i~~~~~~gg~~~~~~~~~l~~~~~IlV~Tpg~L~ 285 (609)
+-++.++..+....+++..+..++.|||+|-....
T Consensus 243 ~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277 (1221)
T ss_dssp TSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHH
T ss_pred CCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHH
Confidence 34667777777767778778889999999976553
No 492
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=32.23 E-value=18 Score=34.07 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.9
Q ss_pred CCCCceeeccCCCCchH
Q 007280 181 GGRDLMACAQTGSGKTA 197 (609)
Q Consensus 181 ~~~d~ii~a~TGsGKT~ 197 (609)
.+.-+.+.+|.|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46667899999999998
No 493
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=32.11 E-value=24 Score=32.41 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.4
Q ss_pred CCceeeccCCCCchHH
Q 007280 183 RDLMACAQTGSGKTAA 198 (609)
Q Consensus 183 ~d~ii~a~TGsGKT~a 198 (609)
..+.+.+++|||||+.
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577899999999983
No 494
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=32.08 E-value=33 Score=27.50 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=31.1
Q ss_pred CCceEEEEecchhhHHHHHHHHHhCCCC-cEEecCccC
Q 007280 403 KQALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRT 439 (609)
Q Consensus 403 ~~~k~lVF~~t~~~~~~l~~~L~~~~~~-~~~ihg~~~ 439 (609)
+..+++|+|.+-..+...+..|...|+. +..+.|++.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 3667999999988888999999999995 778888864
No 495
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=31.86 E-value=19 Score=31.91 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=13.3
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
.+++++++|||||.+
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999984
No 496
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=31.80 E-value=3.5e+02 Score=29.81 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHh-cCcCCCCceEEEEecchhhHHHHHHHHHhCCCCcEEecC
Q 007280 385 RSHLMDLLHAQVA-NGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHG 436 (609)
Q Consensus 385 ~~~l~~~l~~~~~-~~~~~~~~k~lVF~~t~~~~~~l~~~L~~~~~~~~~ihg 436 (609)
...+.+.+..... .+. ...-+.|.+.+...+..+.+.|...++++....+
T Consensus 333 a~~va~~I~~l~~~~g~--~~~diAIL~R~~~~~~~le~~L~~~gIPy~~~g~ 383 (724)
T 1pjr_A 333 AQFVAGRIREAVERGER--RYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGG 383 (724)
T ss_dssp HHHHHHHHHHHHTTTSC--CGGGEEEEESSGGGHHHHHHHHHHTTCCEEEETS
T ss_pred HHHHHHHHHHHHHhcCC--ChhheeeeeecchhHHHHHHHHHHcCCCEEEeCC
Confidence 3445555555443 211 2345788889999999999999999999877644
No 497
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=31.59 E-value=22 Score=31.91 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=12.8
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
.+++.+++|||||+.
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 367899999999983
No 498
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=31.52 E-value=55 Score=36.87 Aligned_cols=53 Identities=11% Similarity=-0.088 Sum_probs=40.9
Q ss_pred CceEEEEecchhhHHHHHHHHH----hCCCCcEEecCccCHHHHHHHHHhhhcCCCcEEEEcc
Q 007280 404 QALTLVFVETKKGADALEHWLY----MNGFPATTIHGDRTQQERELALRSFKSGKTPILVATD 462 (609)
Q Consensus 404 ~~k~lVF~~t~~~~~~l~~~L~----~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ILVaT~ 462 (609)
...++|.++|+.-|...++.+. ..++.+..+.|+++.++|.... .+.|+|+|+
T Consensus 115 g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 115 GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 3468999999998877776654 4589999999999877655443 378999994
No 499
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=31.48 E-value=23 Score=32.39 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=13.0
Q ss_pred CceeeccCCCCchHH
Q 007280 184 DLMACAQTGSGKTAA 198 (609)
Q Consensus 184 d~ii~a~TGsGKT~a 198 (609)
.+++.++.|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999984
No 500
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=31.43 E-value=24 Score=31.53 Aligned_cols=35 Identities=11% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHhhHhCCCCceeeccCCCCchHHhHHHHHHHHHhh
Q 007280 171 VQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMRE 210 (609)
Q Consensus 171 iQ~~~i~~i~~~~d~ii~a~TGsGKT~a~llpil~~l~~~ 210 (609)
+.......+....-+++++++|||||+ +...|.+.
T Consensus 1 ~~~~~~~~~~~~~~I~l~G~~GsGKsT-----~a~~L~~~ 35 (199)
T 2bwj_A 1 SMGGFMEDLRKCKIIFIIGGPGSGKGT-----QCEKLVEK 35 (199)
T ss_dssp ---CHHHHHHHSCEEEEEECTTSSHHH-----HHHHHHHH
T ss_pred CCcccccccCCCCEEEEECCCCCCHHH-----HHHHHHHH
Done!