Query 007282
Match_columns 609
No_of_seqs 336 out of 850
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 21:51:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 4.5E-29 1.5E-33 228.9 14.2 114 34-147 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 6.7E-18 2.3E-22 157.9 11.4 99 37-145 44-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.6 8.6E-15 2.9E-19 128.7 10.3 95 38-143 7-101 (104)
4 1wmh_B Partitioning defective- 95.4 0.073 2.5E-06 45.8 8.8 72 498-576 7-84 (86)
5 1vd2_A Protein kinase C, IOTA 95.2 0.059 2E-06 46.5 7.7 59 497-561 6-64 (89)
6 1na6_A Ecorii, restriction end 93.4 0.14 4.9E-06 54.7 7.6 92 38-130 17-122 (404)
7 2kkc_A Sequestosome-1; P62, PB 91.5 0.3 1E-05 43.1 6.0 64 497-566 5-83 (102)
8 1q1o_A Cell division control p 90.6 0.7 2.4E-05 40.6 7.3 74 497-570 5-85 (98)
9 2ktr_A Sequestosome-1; autopha 88.6 0.84 2.9E-05 41.3 6.5 64 496-566 19-98 (117)
10 1oey_A P67-PHOX, neutrophil cy 85.9 3.1 0.00011 35.4 8.2 70 499-576 7-79 (83)
11 2bkf_A Zinc-finger protein NBR 79.4 5.1 0.00017 34.5 7.0 65 499-570 8-73 (87)
12 1wj6_A KIAA0049 protein, RSGI 78.3 5.2 0.00018 35.3 6.9 60 499-567 16-75 (101)
13 1oey_J P40-PHOX, neutrophil cy 74.3 3.2 0.00011 36.8 4.4 51 514-573 28-78 (107)
14 1pqs_A Cell division control p 73.6 4.2 0.00014 34.0 4.8 58 512-570 5-64 (77)
15 3cgm_A SLYD, peptidyl-prolyl C 61.8 19 0.00066 33.4 7.3 98 120-233 3-110 (158)
16 2kfw_A FKBP-type peptidyl-prol 43.2 24 0.00083 34.0 4.8 100 120-233 3-114 (196)
17 3p8d_A Medulloblastoma antigen 41.2 47 0.0016 27.1 5.5 55 200-271 3-57 (67)
18 3o27_A Putative uncharacterize 40.2 24 0.00083 29.0 3.5 35 112-146 31-66 (68)
19 1mhn_A SurviVal motor neuron p 40.1 29 0.00098 26.9 3.9 42 202-254 2-43 (59)
20 2kr7_A FKBP-type peptidyl-prol 39.8 89 0.0031 28.4 7.9 102 118-233 5-119 (151)
21 2k8i_A SLYD, peptidyl-prolyl C 39.1 74 0.0025 29.8 7.4 100 120-233 3-114 (171)
22 1e8p_A Endoglucanase, dockerin 37.0 9.2 0.00031 29.3 0.6 14 545-558 20-33 (46)
23 3s6w_A Tudor domain-containing 37.0 30 0.001 26.1 3.6 41 203-254 1-41 (54)
24 4a4f_A SurviVal of motor neuro 35.5 36 0.0012 26.8 3.9 43 201-254 6-48 (64)
25 1g5v_A SurviVal motor neuron p 29.9 49 0.0017 28.1 4.0 43 201-254 8-50 (88)
26 3qii_A PHD finger protein 20; 29.7 80 0.0027 27.0 5.3 55 200-271 18-72 (85)
27 2equ_A PHD finger protein 20-l 29.0 48 0.0016 27.4 3.7 40 201-253 7-46 (74)
28 2jng_A Cullin-7, CUL-7; P53 bi 28.4 54 0.0019 29.0 4.1 69 192-272 10-78 (105)
29 4dt4_A FKBP-type 16 kDa peptid 27.4 1.3E+02 0.0043 28.3 6.8 103 119-233 24-138 (169)
30 2e63_A KIAA1787 protein; struc 26.7 41 0.0014 31.7 3.3 23 118-140 116-138 (170)
31 3pr9_A FKBP-type peptidyl-prol 23.5 3.6E+02 0.012 24.8 9.1 59 165-233 57-123 (157)
32 3pnw_C Tudor domain-containing 23.5 71 0.0024 26.3 3.8 42 202-254 16-57 (77)
33 2cbp_A Cucumber basic protein; 20.1 47 0.0016 28.3 2.1 19 114-132 18-36 (96)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=4.5e-29 Score=228.91 Aligned_cols=114 Identities=30% Similarity=0.464 Sum_probs=104.3
Q ss_pred CCCCceeEEEEecccccCCCCCceEEeccchhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeecccchh
Q 007282 34 SPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWST 113 (609)
Q Consensus 34 ~~~~~~~~F~K~LT~SDv~~~grfsVPr~~ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~~rg~prr~lLTtGWs~ 113 (609)
..++..++|+|+||+|||+++++|+||+++|+.|||+++..+..+.++|.++|.+|++|+|+|+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 34567799999999999999999999999999999999987667889999999999999999999999999999999999
Q ss_pred hhcccCCCCCCEEEEEeCCC--CcEEEEEEeccccC
Q 007282 114 FVTSKRLVAGDTFVFLRGEN--GELHVGVRCLARQQ 147 (609)
Q Consensus 114 FV~~K~L~aGD~VvF~R~~~--G~l~VgIRRa~~~~ 147 (609)
||++|+|++||+|+|++.++ +.|+|++||+....
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 99999999999999999764 56999999998765
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.74 E-value=6.7e-18 Score=157.90 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=87.0
Q ss_pred CceeEEEEecccccCCCCCceEEeccchhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeecccchhhhc
Q 007282 37 PKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVT 116 (609)
Q Consensus 37 ~~~~~F~K~LT~SDv~~~grfsVPr~~ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~~rg~prr~lLTtGWs~FV~ 116 (609)
+..++|+|+||+||+.++.+|.||+++++.|||..+ +.+.+.|. |+.|.|+|+|++. ++.|++||..||+
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTL 113 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHH
T ss_pred CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHH
Confidence 456899999999999987789999999999999763 36778887 6999999999974 6999999999999
Q ss_pred ccCCCCCCEEEEEeCCCC--cEEEEEEeccc
Q 007282 117 SKRLVAGDTFVFLRGENG--ELHVGVRCLAR 145 (609)
Q Consensus 117 ~K~L~aGD~VvF~R~~~G--~l~VgIRRa~~ 145 (609)
+++|++||+|+|...++. .+.|.|.|+..
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred HcCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 999999999999997665 58999999763
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.57 E-value=8.6e-15 Score=128.68 Aligned_cols=95 Identities=19% Similarity=0.315 Sum_probs=82.7
Q ss_pred ceeEEEEecccccCCCCCceEEeccchhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeecccchhhhcc
Q 007282 38 KVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTS 117 (609)
Q Consensus 38 ~~~~F~K~LT~SDv~~~grfsVPr~~ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~~rg~prr~lLTtGWs~FV~~ 117 (609)
..+.|.|+|+++|. ..+|.||+++++.+.+.+. ..+.++|..|+.|++++.+++ ++..|++||..||++
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKD 75 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHH
T ss_pred CCCCEEEEECCCCc--cceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHH
Confidence 34689999999994 3589999999988665442 368889999999999999873 578999999999999
Q ss_pred cCCCCCCEEEEEeCCCCcEEEEEEec
Q 007282 118 KRLVAGDTFVFLRGENGELHVGVRCL 143 (609)
Q Consensus 118 K~L~aGD~VvF~R~~~G~l~VgIRRa 143 (609)
++|++||.|+|...++..+.|-|-|.
T Consensus 76 ~~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp HTCCTTCEEEEEECSSSEEEEEEECS
T ss_pred cCCCCCCEEEEEEcCCCeEEEEEECC
Confidence 99999999999999999999999884
No 4
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=95.37 E-value=0.073 Score=45.80 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=53.9
Q ss_pred ceeEEEecCceeeeeecCCCCCChHHHHHHHHHHhhcccccCCCCceEEEEecCCCCeEEccCCChHHHH---hcce---
Q 007282 498 SRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFC---NMVK--- 571 (609)
Q Consensus 498 ~~vKV~m~G~~vgR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~---~~vk--- 571 (609)
--||.+-+++--==.+|-+...+|++|+..|+++|.+. .-.+.+.|+|.+||++-+-++ ++|. .++|
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-----~~~f~i~Y~D~dGDLlpInnD--dnl~~Al~~a~plL 79 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-----GLDVLLGYTDAHGDLLPLTND--DSLHRALASGPPPL 79 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-----TCCCEEEEECTTSCEEECCSH--HHHHHHTTSSSSCE
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-----CCCEEEEEECCCCCEeeecCH--HHHHHHHHhCCCcE
Confidence 45777777753223566677889999999999999853 334899999999999998877 6664 4555
Q ss_pred eEEEe
Q 007282 572 RIFIC 576 (609)
Q Consensus 572 ri~I~ 576 (609)
||+|-
T Consensus 80 Rl~Iq 84 (86)
T 1wmh_B 80 RLLVQ 84 (86)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55553
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.15 E-value=0.059 Score=46.55 Aligned_cols=59 Identities=19% Similarity=0.373 Sum_probs=45.9
Q ss_pred cceeEEEecCceeeeeecCCCCCChHHHHHHHHHHhhcccccCCCCceEEEEecCCCCeEEccCC
Q 007282 497 RSRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD 561 (609)
Q Consensus 497 ~~~vKV~m~G~~vgR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 561 (609)
.--||++.+|.-+-=.|+. --+|++|+++|.++|.+.. ...+++.|.|.|||+.-+-.+
T Consensus 6 ~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~~----~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 6 QVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFDN----EQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp CEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCCS----SCCEEEEECCSSSCCEECCSH
T ss_pred eEEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCCCC----CCeEEEEEECCCCCcccccCH
Confidence 4578999999744334444 5699999999999999753 455899999999998776554
No 6
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=93.38 E-value=0.14 Score=54.74 Aligned_cols=92 Identities=15% Similarity=0.199 Sum_probs=66.1
Q ss_pred ceeEEEEecccccCCCC----CceEEeccchhhcCCCCCC-CCCCCceEEEEE--eCCCCeEEEEEEEeC------CCCc
Q 007282 38 KVHSFSKVLTASDTSTH----GGFSVLRKHATECLPPLDM-NQSTPTQELVAK--DLHGYEWRFKHIFRG------QPRR 104 (609)
Q Consensus 38 ~~~~F~K~LT~SDv~~~----grfsVPr~~ae~~fP~Ld~-~~~~p~q~L~~~--D~~G~~W~Fr~~~rg------~prr 104 (609)
..+.|+|.|++.|++.. .++.+|+..+..+||.|+. .+..+.+.+.+. |...-++.++.+|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 45889999999999866 4899999878999999983 344566666543 443445599999997 3334
Q ss_pred eeecccch-hhhcccCCCCCCEEEEEe
Q 007282 105 HLLTTGWS-TFVTSKRLVAGDTFVFLR 130 (609)
Q Consensus 105 ~lLTtGWs-~FV~~K~L~aGD~VvF~R 130 (609)
|-||. |. .+.-.....+||.++|-+
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~ 122 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAF 122 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEE
Confidence 67762 22 344456778899888874
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=91.53 E-value=0.3 Score=43.12 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=46.5
Q ss_pred cceeEEEecCc----eeeeeecCCC-----------CCChHHHHHHHHHHhhcccccCCCCceEEEEecCCCCeEEccCC
Q 007282 497 RSRTKVQMQGV----AVGRALDLTT-----------LVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD 561 (609)
Q Consensus 497 ~~~vKV~m~G~----~vgR~vDL~~-----------~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 561 (609)
..-||++..|. .-=|++-|.. ..+|++|...+.++|.--. ...+.|.|.|.|||+.-+.++
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~----~~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALR----PGGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC----SSCEEEEEECTTCCEEEECSH
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccC----CCcEEEEEECCCCCEEEecCH
Confidence 45689999752 2335555532 2489999999999996222 345899999999999988877
Q ss_pred ChHHH
Q 007282 562 PWHEF 566 (609)
Q Consensus 562 PW~~F 566 (609)
+++
T Consensus 81 --eEL 83 (102)
T 2kkc_A 81 --EEL 83 (102)
T ss_dssp --HHH
T ss_pred --HHH
Confidence 555
No 8
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=90.57 E-value=0.7 Score=40.60 Aligned_cols=74 Identities=16% Similarity=0.314 Sum_probs=53.0
Q ss_pred cceeEEEecCce----ee--eeecCCCCCChHHHHHHHHHHhhcccccCCCCceEEEEecCCCCeEEccC-CChHHHHhc
Q 007282 497 RSRTKVQMQGVA----VG--RALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGD-DPWHEFCNM 569 (609)
Q Consensus 497 ~~~vKV~m~G~~----vg--R~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD-~PW~~F~~~ 569 (609)
.--|||+-++.. ++ |.|=...--+|++|+.++.+=|.+...-.-.....|-|+|.|||+..+++ +=|++-+.+
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~ 84 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM 84 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence 357888887421 23 77777788899999999999999861101023468999999999977665 557766666
Q ss_pred c
Q 007282 570 V 570 (609)
Q Consensus 570 v 570 (609)
+
T Consensus 85 ~ 85 (98)
T 1q1o_A 85 L 85 (98)
T ss_dssp H
T ss_pred H
Confidence 5
No 9
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=88.61 E-value=0.84 Score=41.26 Aligned_cols=64 Identities=16% Similarity=0.304 Sum_probs=46.3
Q ss_pred CcceeEEEecCc----eeeeeecCC-----------CCCChHHHHHHHHHHhh-cccccCCCCceEEEEecCCCCeEEcc
Q 007282 496 NRSRTKVQMQGV----AVGRALDLT-----------TLVGYDHLIDELEEMFD-IKGQLHTRTKWEIVYTDDEGDMMLVG 559 (609)
Q Consensus 496 ~~~~vKV~m~G~----~vgR~vDL~-----------~~~sY~eL~~~L~~MF~-~~g~l~~~~~~~v~Y~D~eGD~mlvG 559 (609)
...-||++..|. .-=|++-|. ...+|++|...+.++|. +. ...|.|.|.|.|||+.-+.
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-----~~~f~l~YkDEdGDlItIS 93 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-----PGGFQAHYRAERGDLVAFS 93 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-----SSCEEEEEECTTCCEEEEC
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccC-----CCcEEEEEECCCCCEEEec
Confidence 457799999752 122555543 24599999999999995 43 2358999999999998887
Q ss_pred CCChHHH
Q 007282 560 DDPWHEF 566 (609)
Q Consensus 560 D~PW~~F 566 (609)
.+ +++
T Consensus 94 sD--eEL 98 (117)
T 2ktr_A 94 SD--EEL 98 (117)
T ss_dssp SH--HHH
T ss_pred CH--HHH
Confidence 76 554
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=85.95 E-value=3.1 Score=35.42 Aligned_cols=70 Identities=13% Similarity=0.250 Sum_probs=56.5
Q ss_pred eeEEEecCceeeeeecCCCCCChHHHHHHHHHHhhcccccCCCCceEEEEec-CCCCeEEccCCChHHHHhcce--eEEE
Q 007282 499 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTD-DEGDMMLVGDDPWHEFCNMVK--RIFI 575 (609)
Q Consensus 499 ~vKV~m~G~~vgR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D-~eGD~mlvGD~PW~~F~~~vk--ri~I 575 (609)
-|||+-+ .--.|....=-+|.+|.+.|.+=+.+.++- -+|-|.| .+|.+++.+|.=++.-..-|+ ||++
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~-----~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEH-----TKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGG-----CCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEE
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcce-----eEEEeeCCCCCCeeccChHHHHHHHHhccCCcEEE
Confidence 4678877 567788888889999999999999886432 2688999 688888999999998888755 6776
Q ss_pred e
Q 007282 576 C 576 (609)
Q Consensus 576 ~ 576 (609)
+
T Consensus 79 ~ 79 (83)
T 1oey_A 79 W 79 (83)
T ss_dssp E
T ss_pred E
Confidence 5
No 11
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=79.42 E-value=5.1 Score=34.49 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=46.1
Q ss_pred eeEEEecCceeeeeecCCCCCChHHHHHHHHHHhhcccccCCCCceEEEEecCCCCeEEccC-CChHHHHhcc
Q 007282 499 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGD-DPWHEFCNMV 570 (609)
Q Consensus 499 ~vKV~m~G~~vgR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD-~PW~~F~~~v 570 (609)
-.||.-.|...-=-|.-..--++++|...+..+|++.. ++|.|.|.|||-.-|-- .=+++=++++
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~-------~~ikY~DEenD~v~i~Sq~E~eEAlkva 73 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT-------IQIKYLDEENEEVSINSQGEYEEALKMA 73 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS-------EEEEEECTTSCEEEECSHHHHHHHHHHH
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCCc-------eEEEEEcCCCCEEEEecHHHHHHHHHHh
Confidence 46888888753323533346799999999999999963 69999999999876643 3334444443
No 12
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=78.34 E-value=5.2 Score=35.28 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=46.1
Q ss_pred eeEEEecCceeeeeecCCCCCChHHHHHHHHHHhhcccccCCCCceEEEEecCCCCeEEccCCChHHHH
Q 007282 499 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFC 567 (609)
Q Consensus 499 ~vKV~m~G~~vgR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~ 567 (609)
-.||.-.|...==-|.-..--++++|...|..+|++.. ++|.|.|.|||-.-| .-+.+|-
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~-------~~IkY~DEenD~V~i--~Sq~E~e 75 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT-------IQIKYLDEENEEVSI--NSQGEYE 75 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSS-------BCCEEECTTSCEECC--CSHHHHH
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCc-------eEEEEecCCCCEEEE--ecHHHHH
Confidence 47899999754334644446799999999999999963 589999999999887 4456653
No 13
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=74.33 E-value=3.2 Score=36.78 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=39.7
Q ss_pred cCCCCCChHHHHHHHHHHhhcccccCCCCceEEEEecCCCCeEEccCCChHHHHhcceeE
Q 007282 514 DLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFCNMVKRI 573 (609)
Q Consensus 514 DL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~~~vkri 573 (609)
||+..-.|++|+....+-|.-+ +-.+-|+|.|||+.-+=|+ ++--=|+++-
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~-------DIaLNYrD~eGDLIrildd--eDv~lmi~~s 78 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE-------DIALNYRDAEGDLVRLLSD--EDVALMVRQA 78 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS-------SEEEEEECTTSCEEECCSH--HHHHHHHHHC
T ss_pred ccccCCCHHHHHHHHHHHhccc-------ceeeeeecCCCCEEEEcch--HHHHHHHHHh
Confidence 7888899999999999999843 3478899999999777666 5544455543
No 14
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=73.65 E-value=4.2 Score=34.05 Aligned_cols=58 Identities=22% Similarity=0.466 Sum_probs=41.5
Q ss_pred eecCCCCCChHHHHHHHHHHhhcccccCC-CCceEEEEecCCCCeEEcc-CCChHHHHhcc
Q 007282 512 ALDLTTLVGYDHLIDELEEMFDIKGQLHT-RTKWEIVYTDDEGDMMLVG-DDPWHEFCNMV 570 (609)
Q Consensus 512 ~vDL~~~~sY~eL~~~L~~MF~~~g~l~~-~~~~~v~Y~D~eGD~mlvG-D~PW~~F~~~v 570 (609)
.|=...--+|++|+.++.+=|.+. .... .....+-|+|.|||+...+ |+=|++-+.++
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~-~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNT-HNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTT-TSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHccc-ccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 344445568999999999999975 1111 3456899999999987665 55677777765
No 15
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=61.77 E-value=19 Score=33.41 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=62.4
Q ss_pred CCCCCEEEEE-eC-CCCcEEEEEEeccccCCCCCCcccccCcccchhHHHHHHHHhcCCceEEEEecCC------C--cc
Q 007282 120 LVAGDTFVFL-RG-ENGELHVGVRCLARQQSSMPSSVISSQSMHLGVLATASHAVATQTMFVVYYKPRT------S--QF 189 (609)
Q Consensus 120 L~aGD~VvF~-R~-~~G~l~VgIRRa~~~~~~~p~sv~~~~~~~~~vla~A~~a~~tg~~F~V~Y~Pr~------s--eF 189 (609)
.+.||.|.+. .. .+|+.+-.-+ ..... ....+-.| +.+|..-...|..++|.--|.. . -+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--~~f~~-------G~g~vipG-~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--LSYLH-------GHRNLIPG-LEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--EEEET-------TSSSSCHH-HHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--EEEEE-------CCCCcChH-HHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 5678888773 22 5777655443 11110 11112223 4567777788998988876643 1 67
Q ss_pred eeeHHHHHHHHcCCCccCCEEEEEEecCCCCCceeeeEEeeeec
Q 007282 190 IISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 233 (609)
Q Consensus 190 vV~~~~y~~a~~~~w~~GmRFkM~fe~eD~~~~~~~GtI~~v~~ 233 (609)
.|+++.+... ..|.+||+|.+. +++- +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~--~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED--AEVVPGAQFYAQ--DMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT--SCCCTTCEEEEE--ETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC--CCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 8999888532 589999999865 3332 567899999975
No 16
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=43.25 E-value=24 Score=34.02 Aligned_cols=100 Identities=20% Similarity=0.243 Sum_probs=61.3
Q ss_pred CCCCCEEEE-Ee--CCCCcEEEEEEeccccCCCCCCccc-ccCcccchhHHHHHHHHhcCCceEEEEecCC------C--
Q 007282 120 LVAGDTFVF-LR--GENGELHVGVRCLARQQSSMPSSVI-SSQSMHLGVLATASHAVATQTMFVVYYKPRT------S-- 187 (609)
Q Consensus 120 L~aGD~VvF-~R--~~~G~l~VgIRRa~~~~~~~p~sv~-~~~~~~~~vla~A~~a~~tg~~F~V~Y~Pr~------s-- 187 (609)
.+.||.|.+ |. ..+|+.+-.-+. ..|...+ ....+-.| +.+|..-...|..++|+.-|-. .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~------~~P~~f~lG~g~vipG-~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV------SAPLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCT------TSCCEEESSSSSSCHH-HHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCC------CCCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 568999887 33 357776544321 1232222 11222223 4567777778888988876643 1
Q ss_pred cceeeHHHHHHHHcCCCccCCEEEEEEecCCCCCceeeeEEeeeec
Q 007282 188 QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 233 (609)
Q Consensus 188 eFvV~~~~y~~a~~~~w~~GmRFkM~fe~eD~~~~~~~GtI~~v~~ 233 (609)
-+.|+++.+.. ...+.+||+|.+ ++++ ..+.++|+.|.+
T Consensus 76 V~~vp~~~f~~--~~~~~~G~~~~~--~~~~---G~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQ---GPVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCC--SSCCCTTCEEEE--EETT---EEEEEEBCCCCS
T ss_pred EEEEEHHHCCC--ccCcccCCEEEE--ECCC---CcEEEEEEEEcC
Confidence 57888887742 247999999974 4444 257889998864
No 17
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=41.21 E-value=47 Score=27.08 Aligned_cols=55 Identities=13% Similarity=0.285 Sum_probs=39.6
Q ss_pred HcCCCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCceeEEEeecCCCCCCCCCccccCcceecc
Q 007282 200 VNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFV 271 (609)
Q Consensus 200 ~~~~w~~GmRFkM~fe~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~ 271 (609)
|-..|++|+++-.+. +| .++|-++|.+|.. + ....|..++.. .+.|..=+|.|+.
T Consensus 3 ~~~~~~vGd~vmArW-~D---~~yYpA~I~si~~-------~--~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SD---CRFYPAKVTAVNK-------D--GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp --CCCCTTCEEEEEC-TT---SCEEEEEEEEECT-------T--SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cCcccccCCEEEEEc-CC---CCEeeEEEEEECC-------C--CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 556899999999999 43 3899999999974 2 56899999932 4555555555543
No 18
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=40.19 E-value=24 Score=28.97 Aligned_cols=35 Identities=11% Similarity=0.291 Sum_probs=30.2
Q ss_pred hhhhcccCCCCCCEEEEEeC-CCCcEEEEEEecccc
Q 007282 112 STFVTSKRLVAGDTFVFLRG-ENGELHVGVRCLARQ 146 (609)
Q Consensus 112 s~FV~~K~L~aGD~VvF~R~-~~G~l~VgIRRa~~~ 146 (609)
.+++++-+|+.||.+...-+ .+|++.++.+|-++.
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk~ 66 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKEL 66 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhhc
Confidence 48999999999999999885 589999999996543
No 19
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=40.11 E-value=29 Score=26.88 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=30.6
Q ss_pred CCCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCceeEEEeecCCC
Q 007282 202 NKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 254 (609)
Q Consensus 202 ~~w~~GmRFkM~fe~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~ 254 (609)
+.|.+|+.+-.+|..|. .||-++|.++...+ ....|.-.+=.
T Consensus 2 ~~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~~~--------~~~~V~f~DYG 43 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDG---CIYPATIASIDFKR--------ETCVVVYTGYG 43 (59)
T ss_dssp CCCCTTCEEEEECTTTS---CEEEEEEEEEETTT--------TEEEEEETTTT
T ss_pred CcCCcCCEEEEEECCCC---CEEEEEEEEEcCCC--------CEEEEEEEcCC
Confidence 57999999999995443 89999999996311 34567775533
No 20
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=39.82 E-value=89 Score=28.45 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=63.8
Q ss_pred cCCCCCCEEEEE-e--CC-CCcEEEEEEeccccCCCCCCccc-ccCcccchhHHHHHHHHhcCCceEEEEecCC------
Q 007282 118 KRLVAGDTFVFL-R--GE-NGELHVGVRCLARQQSSMPSSVI-SSQSMHLGVLATASHAVATQTMFVVYYKPRT------ 186 (609)
Q Consensus 118 K~L~aGD~VvF~-R--~~-~G~l~VgIRRa~~~~~~~p~sv~-~~~~~~~~vla~A~~a~~tg~~F~V~Y~Pr~------ 186 (609)
+..+.||.|.+. . .. +|+.+-.-+. ..|.... ....+-.| +.+|..-...|..++|.--|..
T Consensus 5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~------~~p~~f~~G~g~vipg-~e~aL~gm~~Ge~~~v~ipp~~aYG~~~ 77 (151)
T 2kr7_A 5 DLESIKQAALIEYEVREQGSSIVLDSNIS------KEPLEFIIGTNQIIAG-LEKAVLKAQIGEWEEVVIAPEEAYGVYE 77 (151)
T ss_dssp CCTTSCCEEEEEEEEEESSCSCEEEESTT------TCCEEEETTCCCSCHH-HHHHHTTCCBTCEEEEEECGGGTTCSSC
T ss_pred cCCCCCCEEEEEEEEEECCCCCEEEeCCC------CcCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEecHHHcCCCC
Confidence 456789998873 3 23 7776544321 1222221 11222223 4567777788888888876643
Q ss_pred C--cceeeHHHHHHHHcCCCccCCEEEEEEecCCCCCceeeeEEeeeec
Q 007282 187 S--QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 233 (609)
Q Consensus 187 s--eFvV~~~~y~~a~~~~w~~GmRFkM~fe~eD~~~~~~~GtI~~v~~ 233 (609)
. -+.|+++.+ . ...+.+||+|.+. +++- +.+.|+|+.|.+
T Consensus 78 ~~~v~~v~~~~f-~--~~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 78 SSYLQEVPRDQF-E--GIELEKGMSVFGQ--TEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp SCEEEEEEGGGG-T--TSCCCTTCEEEEE--ETTT--EEEEEEEEEECS
T ss_pred cceEEEEcHHHc-C--CCCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 1 678899888 1 3589999999854 3442 457899999975
No 21
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=39.10 E-value=74 Score=29.84 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=61.7
Q ss_pred CCCCCEEEE-Ee--CCCCcEEEEEEeccccCCCCCCccc-ccCcccchhHHHHHHHHhcCCceEEEEecCCC--------
Q 007282 120 LVAGDTFVF-LR--GENGELHVGVRCLARQQSSMPSSVI-SSQSMHLGVLATASHAVATQTMFVVYYKPRTS-------- 187 (609)
Q Consensus 120 L~aGD~VvF-~R--~~~G~l~VgIRRa~~~~~~~p~sv~-~~~~~~~~vla~A~~a~~tg~~F~V~Y~Pr~s-------- 187 (609)
.+.||.|++ |. ..+|+.+-.-+.. .|.... ....+-.| +.+|..-...|..++|..-|-..
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCSH-HHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 568888877 33 3477765543211 122211 11222223 45677777888888888766431
Q ss_pred cceeeHHHHHHHHcCCCccCCEEEEEEecCCCCCceeeeEEeeeec
Q 007282 188 QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 233 (609)
Q Consensus 188 eFvV~~~~y~~a~~~~w~~GmRFkM~fe~eD~~~~~~~GtI~~v~~ 233 (609)
-+.|+++.+.. ...+.+||+|.+. +++- + ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~--~~~~~~G~~~~~~--~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMG--VDELQVGMRFLAE--TDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTT--SSCCCTTCEEEEE--ETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCc--ccCccCCcEEEEE--CCCC--c-EEEEEEEEcC
Confidence 56788888753 3479999999854 4442 2 6899999864
No 22
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=37.00 E-value=9.2 Score=29.25 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=11.7
Q ss_pred EEEEecCCCCeEEc
Q 007282 545 EIVYTDDEGDMMLV 558 (609)
Q Consensus 545 ~v~Y~D~eGD~mlv 558 (609)
.|+|+|.+|+|=.-
T Consensus 20 ~V~YtD~dG~WGVe 33 (46)
T 1e8p_A 20 KVEYTDASGQWGVQ 33 (46)
T ss_dssp CEEEEETTEEEEEE
T ss_pred eEEEEcCCCccccC
Confidence 59999999999543
No 23
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=36.96 E-value=30 Score=26.14 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=28.8
Q ss_pred CCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCceeEEEeecCCC
Q 007282 203 KFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 254 (609)
Q Consensus 203 ~w~~GmRFkM~fe~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~ 254 (609)
.|.+|+.+-.+|..|. .||-++|.++.... ....|...+-.
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~~~--------~~~~V~fvDYG 41 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHSSG--------MTAVVKFIDYG 41 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--CC--------SEEEEEETTTC
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeCCC--------CEEEEEEEccC
Confidence 4999999999995443 89999999995311 34556665544
No 24
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=35.55 E-value=36 Score=26.85 Aligned_cols=43 Identities=5% Similarity=0.224 Sum_probs=32.5
Q ss_pred cCCCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCceeEEEeecCCC
Q 007282 201 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 254 (609)
Q Consensus 201 ~~~w~~GmRFkM~fe~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~ 254 (609)
...|.+|+.+..+|..|. .||.++|.+|.... ....|...+-.
T Consensus 6 ~~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~--------~~~~V~fvdYG 48 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN--------GTAAITFAGYG 48 (64)
T ss_dssp SSCCCTTCEEEEECTTTS---SEEEEEEEEEETTT--------TEEEEEETTTT
T ss_pred CCCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC--------CEEEEEEEecC
Confidence 468999999999995443 89999999997411 25678877654
No 25
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=29.89 E-value=49 Score=28.13 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=31.5
Q ss_pred cCCCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCceeEEEeecCCC
Q 007282 201 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 254 (609)
Q Consensus 201 ~~~w~~GmRFkM~fe~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~ 254 (609)
...|.+|+.+..+|..|. .||-++|.+|.... ....|.-.+=.
T Consensus 8 ~~~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~~~--------~~~~V~fiDYG 50 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDG---CIYPATIASIDFKR--------ETCVVVYTGYG 50 (88)
T ss_dssp -CCCCSSCEEEEECTTTC---CEEEEEEEEEETTT--------TEEEEEETTTC
T ss_pred cCCCCCCCEEEEEECCCC---CEEEEEEEEecCCC--------CEEEEEEecCC
Confidence 468999999999995443 89999999996411 34568775544
No 26
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=29.67 E-value=80 Score=26.95 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=39.6
Q ss_pred HcCCCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCceeEEEeecCCCCCCCCCccccCcceecc
Q 007282 200 VNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFV 271 (609)
Q Consensus 200 ~~~~w~~GmRFkM~fe~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~ 271 (609)
-...|++|+++-.+. +| .++|-++|++|... ....|.+++.. .+.|.+=+|.|+.
T Consensus 18 ~~~~f~vGd~VlArW-~D---~~yYPAkI~sV~~~---------~~YtV~F~DG~----~etvk~~~IKp~~ 72 (85)
T 3qii_A 18 GSSEFQINEQVLACW-SD---CRFYPAKVTAVNKD---------GTYTVKFYDGV----VQTVKHIHVKAFS 72 (85)
T ss_dssp ---CCCTTCEEEEEC-TT---SCEEEEEEEEECTT---------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred CCcccccCCEEEEEe-CC---CCEeeEEEEEECCC---------CeEEEEEeCCC----eEEecHHHcccCC
Confidence 356899999999999 44 38999999999742 46999999933 4556666666644
No 27
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.01 E-value=48 Score=27.35 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=32.0
Q ss_pred cCCCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCceeEEEeecCC
Q 007282 201 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEP 253 (609)
Q Consensus 201 ~~~w~~GmRFkM~fe~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~ 253 (609)
...|.+|+++..++. |. .||-++|.+|.. + ....|..++-
T Consensus 7 ~~~~kvGd~clA~ws-Dg---~~Y~A~I~~v~~------~---~~~~V~f~Dy 46 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DC---RYYPAKIEAINK------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCCTTCEEEEECS-SS---SEEEEEEEEEST------T---SSEEEEETTS
T ss_pred CCCCCCCCEEEEECC-CC---CEEEEEEEEECC------C---CEEEEEEecC
Confidence 457999999999996 32 899999999953 1 3568998875
No 28
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=28.38 E-value=54 Score=29.05 Aligned_cols=69 Identities=20% Similarity=0.183 Sum_probs=44.7
Q ss_pred eHHHHHHHHcCCCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCceeEEEeecCCCCCCCCCccccCcceecc
Q 007282 192 SLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFV 271 (609)
Q Consensus 192 ~~~~y~~a~~~~w~~GmRFkM~fe~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~ 271 (609)
.++.|-.-+..+.+||||+||.=.-|+.+. -=.|++. ++. + .-| ..||.|..... .--|+-=.||.+.
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~-Gl~-----~vQv~W~~~G~---TyWV~~~~~Ellg 77 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-N-GVP-----PVQVFWESTGR---TYWVHWHMLEILG 77 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-T-TSS-----EEEEEETTTTE---EEEEEGGGEEECC
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhcc-CCceeEE-ecC-C-CCc-----cceeeehhcCc---eEEEEeehhhhcC
Confidence 456788888889999999999854444332 2367877 431 1 112 89999987662 3445555666654
Q ss_pred C
Q 007282 272 A 272 (609)
Q Consensus 272 ~ 272 (609)
.
T Consensus 78 ~ 78 (105)
T 2jng_A 78 F 78 (105)
T ss_dssp C
T ss_pred C
Confidence 3
No 29
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=27.39 E-value=1.3e+02 Score=28.32 Aligned_cols=103 Identities=11% Similarity=0.181 Sum_probs=64.5
Q ss_pred CCCCCCEEEE-Ee--CCCCcEEEEEEeccccCCCCCCccc-ccCcccchhHHHHHHHHhcCCceEEEEecCCC-------
Q 007282 119 RLVAGDTFVF-LR--GENGELHVGVRCLARQQSSMPSSVI-SSQSMHLGVLATASHAVATQTMFVVYYKPRTS------- 187 (609)
Q Consensus 119 ~L~aGD~VvF-~R--~~~G~l~VgIRRa~~~~~~~p~sv~-~~~~~~~~vla~A~~a~~tg~~F~V~Y~Pr~s------- 187 (609)
..+.||.|.+ |. ..+|+.+-.-+.. +.|.... ....+-.| +.+|..-...|..++|+.-|...
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~-----~~P~~f~lG~g~vipG-~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNN-----GKPALFRLGDASLSEG-LEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHH-----TSCEEEETTSSSSCHH-HHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCC-----CCCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5778999988 44 3678765442211 1122221 11122223 46677778889999998776431
Q ss_pred -cceeeHHHHHHHHcCCCccCCEEEEEEecCCCCCceeeeEEeeeec
Q 007282 188 -QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 233 (609)
Q Consensus 188 -eFvV~~~~y~~a~~~~w~~GmRFkM~fe~eD~~~~~~~GtI~~v~~ 233 (609)
=+.|+++.+.. ...+.+||+|.+. +++- ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~--~~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMD--AGEPEIGAIMLFT--AMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTT--TCCCCTTCEEEEE--CTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCC--cCCCCCCcEEEEE--CCCC--CEEEEEEEEEcC
Confidence 46788888753 3468999998764 4432 468899999975
No 30
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.69 E-value=41 Score=31.75 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.6
Q ss_pred cCCCCCCEEEEEeCCCCcEEEEE
Q 007282 118 KRLVAGDTFVFLRGENGELHVGV 140 (609)
Q Consensus 118 K~L~aGD~VvF~R~~~G~l~VgI 140 (609)
..|.+||.|-|++..+|+|++.|
T Consensus 116 ~~l~~Gd~ig~~~~~~G~l~~~i 138 (170)
T 2e63_A 116 DQLGEGDRVGVERTVAGELRLWV 138 (170)
T ss_dssp GGCCSSCCEEEEECTTSCEEEEE
T ss_pred cccCCCCEEEEEEcCCcEEEEEE
Confidence 45789999999999999999886
No 31
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=23.51 E-value=3.6e+02 Score=24.77 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCceEEEEecCC------C--cceeeHHHHHHHHcCCCccCCEEEEEEecCCCCCceeeeEEeeeec
Q 007282 165 LATASHAVATQTMFVVYYKPRT------S--QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 233 (609)
Q Consensus 165 la~A~~a~~tg~~F~V~Y~Pr~------s--eFvV~~~~y~~a~~~~w~~GmRFkM~fe~eD~~~~~~~GtI~~v~~ 233 (609)
+++|..-...|..++|+--|.. . =+.|+++.+.+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 57 ~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~~~V~~v~~~~f~~~-~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 57 LDEAILEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKR-GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp HHHHHHHCCTTCEEEEEECGGGTTCCCCGGGEEEEEHHHHHHT-TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred HHHHHcCCCCCCEEEEEECcHHhcCCCChHhEEEcCHHHCCcc-cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 4678888899999999876532 2 467899888653 456788999975 321 589999975
No 32
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=23.50 E-value=71 Score=26.25 Aligned_cols=42 Identities=7% Similarity=0.096 Sum_probs=31.3
Q ss_pred CCCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCceeEEEeecCCC
Q 007282 202 NKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 254 (609)
Q Consensus 202 ~~w~~GmRFkM~fe~eD~~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~ 254 (609)
..|.+|+.+-.+|..|. .||-++|.+|.... ....|...+-.
T Consensus 16 ~~~kvGd~C~A~ys~Dg---~wYRA~I~~i~~~~--------~~~~V~fvDYG 57 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDN---KFYRAEVEALHSSG--------MTAVVKFIDYG 57 (77)
T ss_dssp TTCCTTCEEEEEETTTT---EEEEEEEEEECTTS--------SEEEEEETTTC
T ss_pred CCCCcCCEEEEEECCCC---CEEEEEEEEEeCCC--------CEEEEEEEcCC
Confidence 47999999999995443 89999999996311 35667776654
No 33
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=20.15 E-value=47 Score=28.34 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=15.5
Q ss_pred hhcccCCCCCCEEEEEeCC
Q 007282 114 FVTSKRLVAGDTFVFLRGE 132 (609)
Q Consensus 114 FV~~K~L~aGD~VvF~R~~ 132 (609)
-+..|...+||+|+|.=..
T Consensus 18 Wa~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 18 WPKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTTCCBCTTCEEEEECCT
T ss_pred hccCceEcCCCEEEEEecC
Confidence 4677899999999997643
Done!